Citrus Sinensis ID: 039599

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
RTDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD
Secondary Structure (PSIPRED)
cccccEEEEEEcccccccccccccccccccccEEEccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEccccccccccccccccccccccEEcccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHcEEEEEcccccccccccHHHHHcHHHHHHHcccccccccccccHccEEEcccccccccccHHccccccEEEEcccccccccccHHcccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccHcccEEEcccccccccccHHHcccHcccEEccHccccccHHHcccccccEEEccccccccccHHHccccccccccHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHccHcccccc
Coil and Loop (DISEMBL)
RTDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLldskgckilrsfpsnlhfvspvtidftscinltdfphisgnitrlyldetaieevpssikcltnlkllrinrctrLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQInlgrttiteqrpssfenvkgletlgfseldnlsdnignfksfeymgahgsaisqlpslssglvplsASLLSGLSLLYWLHLnncaltsipqeigyLSSLEWLHLRgnnleglpasIKQISRLESLD
Flexible Loop (DISEMBL)
RTDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVpssikcltnlkllrinrctrlkrvstsicklksliaLSAYGCLNLERFPESLEKMEHLNQINLgrttiteqrpssFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNleglpasikqisrlesld
Low Complexity Region (SEG)
RTDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAIsqlpslssglvplsasllsglsllywlhlNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD
Disordered region (IsUnstruct)
****IESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTI**********VKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGL**************
Disordered Region (DISOPRED)
RTDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD
Disordered Region (DISEMBL)
RTDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD
Disordered Region (DISPRO)
**DAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRL**L*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RTDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.484	0.074	0.412	9e-19
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.774	0.174	0.342	4e-18
Q40392	1144	TMV resistance protein N	N/A	no	0.703	0.180	0.325	4e-16
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.808	0.231	0.253	1e-08
Q22875	559	Leucine-rich repeat prote	no	no	0.610	0.320	0.321	3e-08
Q3KQF4	345	Leucine-rich repeat-conta	N/A	no	0.648	0.550	0.267	2e-07
P08678	2026	Adenylate cyclase OS=Sacc	yes	no	0.675	0.097	0.282	2e-07
Q9LHP4	1141	Receptor-like protein kin	no	no	0.617	0.158	0.309	4e-07
Q9D9Q0	347	Leucine-rich repeat-conta	yes	no	0.624	0.527	0.271	6e-07
Q6P9F7	803	Leucine-rich repeat-conta	yes	no	0.634	0.231	0.285	9e-07

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 1/143 (0%)

Query: 51   LLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSI 110
             L+ KGC  L + PS +   S   ++ + C  L +FP IS N+  LY+  T I+E+PSSI
Sbjct: 1309 FLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSI 1368

Query: 111  KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG 170
            K L  L+ L +     LK + TSI KLK L  L+  GC++LERFP+S  +M+ L  ++L 
Sbjct: 1369 KNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLS 1428

Query: 171  RTTITEQRPSSFENVKGLETLGF 193
            RT I E  PSS   +  L+ L F
Sbjct: 1429 RTDIKE-LPSSISYLTALDELLF 1450

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 116/245 (47%), Gaps = 18/245 (7%)

Query: 52   LDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIK 111
            L+ K C  L   P++++  S  T+D + C +L  FP IS NI  LYL+ TAIEE+PS+I 
Sbjct: 825  LEMKECTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIG 884

Query: 112  CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171
             L  L  L + +CT L+ + T +  L SL  L   GC +L  FP   E ++ L   N   
Sbjct: 885  NLHRLVRLEMKKCTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISESIKWLYLEN--- 940

Query: 172  TTITEQRP--SSFENVKGLETLGFSELDNLSDNIGNFK---SFEYMGAHGSAISQLPSLS 226
             T  E+ P  S   N+K L+      L  L   IGN +   SFE     G  +  +    
Sbjct: 941  -TAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDVNL 999

Query: 227  SGLVPLSASLLSGLSL-------LYWLHLNNCALTSIPQEIGYLSSLEWLHLRG-NNLEG 278
            S L+ L  S  S L         + WL+L N A+  IP  IG L  L  L ++    LE 
Sbjct: 1000 SSLMILDLSGCSSLRTFPLISTNIVWLYLENTAIEEIPSTIGNLHRLVKLEMKECTGLEV 1059

Query: 279  LPASI 283
            LP  +
Sbjct: 1060 LPTDV 1064

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 119/243 (48%), Gaps = 37/243 (15%)

Query: 57  CKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNIT---RLYLDETAIEEVPSSI-KC 112
           CK L+ FP  ++  S   +   SC +L   P I G +    ++++  + I E+PSSI + 
Sbjct: 676 CKSLKRFPC-VNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQY 734

Query: 113 LTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT 172
            T++  L +     L  + +SIC+LKSL++LS  GC  LE  PE +  +++L   +   T
Sbjct: 735 KTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDT 794

Query: 173 TITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPL 232
            I  + PSS   +  L  L F            FK     G H     + P ++ GL  L
Sbjct: 795 LIL-RPPSSIIRLNKLIILMFR----------GFKD----GVH----FEFPPVAEGLHSL 835

Query: 233 SASLLSGLSLLYWLHLNNCALTS--IPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLE 290
                       +L+L+ C L    +P+EIG LSSL+ L L  NN E LP+SI Q+  L+
Sbjct: 836 E-----------YLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQ 884

Query: 291 SLD 293
           SLD
Sbjct: 885 SLD 887

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 131/296 (44%), Gaps = 59/296 (19%)

Query: 55  KGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGN--ITRLYLDETAIEEVPSSIKC 112
           KG K  ++ P  +  +  +     S   L   P + G   + RL ++++ +E++P+    
Sbjct: 255 KGAKNFKALPDAVWRLPALQELKLSETGLKSLPPVGGGSALQRLTIEDSPLEQLPAGFAD 314

Query: 113 LTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQI----- 167
           L  L  L ++  T+L+++S+ I +L +L +LS      LER P+SL ++E L  I     
Sbjct: 315 LDQLASLSLSN-TKLEKLSSGIGQLPALKSLSLQDNPKLERLPKSLGQVEELTLIGGRIH 373

Query: 168 --------------------------------NLGRTTITEQR----PSSFENVKGLETL 191
                                           NL   +++  +    P+S  N+  L+TL
Sbjct: 374 ALPSASGMSSLQKLTVDNSSLAKLPADFGALGNLAHVSLSNTKLRDLPASIGNLFTLKTL 433

Query: 192 GFSE---LDNLSDNIGNFKSFEYMGAHGSAISQLPSL--SSGLVPLSA--SLLSGLSL-- 242
              +   L +L  + G     + +  +G+ I +LPS+  +S L  L+   + L+GL    
Sbjct: 434 SLQDNPKLGSLPASFGQLSGLQELTLNGNRIHELPSMGGASSLQTLTVDDTALAGLPADF 493

Query: 243 -----LYWLHLNNCALTSIPQEIGYLSSLEWLHLRGN-NLEGLPASIKQISRLESL 292
                L  L L+N  L  +P   G L +L+ L L+GN  L  LP+S+  +S LE L
Sbjct: 494 GALRNLAHLSLSNTQLRELPANTGNLHALKTLSLQGNQQLATLPSSLGYLSGLEEL 549

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q22875|SHOC2_CAEEL Leucine-rich repeat protein soc-2 OS=Caenorhabditis elegans GN=soc-2 PE=1 SV=3

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 90/199 (45%), Gaps = 20/199 (10%)

Query: 95  RLYLDETAIEEVPSSIKCLTNLK--LLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE 152
           RL L    I  +PS IK LT L    L  N+ T L      +  LK L  LS      L 
Sbjct: 77  RLDLSSIEITSIPSPIKELTQLTELFLYKNKLTCLPTEIGQLVNLKKL-GLSENA---LT 132

Query: 153 RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLG--FSELDNLSDNIGNFKSFE 210
             P+SL  +E L  ++L    +TE  PS    +  LETL   ++ +  + + IGN    +
Sbjct: 133 SLPDSLASLESLETLDLRHNKLTE-VPSVIYKIGSLETLWLRYNRIVAVDEQIGNLSKLK 191

Query: 211 YMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLH 270
            +    + I +LPS    L  L   L+S      + H     LT +P+EIG   SL  L 
Sbjct: 192 MLDVRENKIRELPSAIGKLTSLVVCLVS------YNH-----LTRVPEEIGDCHSLTQLD 240

Query: 271 LRGNNLEGLPASIKQISRL 289
           L+ N+L  LP SI ++  L
Sbjct: 241 LQHNDLSELPYSIGKLVNL 259

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation. Required for vulval development.

Caenorhabditis elegans (taxid: 6239)

>sp|Q3KQF4|LRC69_XENLA Leucine-rich repeat-containing protein 69 OS=Xenopus laevis GN=lrrc69 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 19/209 (9%)

Query: 89  ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRI--NRCTRLKRVSTSICKLKSLIALSAY 146
           I G    L L+   ++ VP ++ CL +L  L++  N   RL    +++C+L+ L      
Sbjct: 10  IRGKAKTLNLNGKRLQRVPVAVGCLISLTELQLKNNLLCRLPVELSALCRLRVL----HL 65

Query: 147 GCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIG 204
           G  + E+ PE ++ ++ L +++L    I+E   ++ + +  L  L  +    ++L   I 
Sbjct: 66  GNNHFEKVPEEIKYLKCLERLHLFGNRISEIPAAALDGLDNLLFLNLNNNLLEHLPREIY 125

Query: 205 NFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLS 264
             +S E +  + + +  +P             L  L  L  LHL N  L S+P E+ YL+
Sbjct: 126 KLQSLETLSINNNHMKAIPKE-----------LCFLQNLQELHLANNQLDSLPDELSYLT 174

Query: 265 SLEWLHLRGNNLEGLPASIKQISRLESLD 293
           +L+ L L  N L GLP  I ++ +L+ LD
Sbjct: 175 NLKELRLSRNQLTGLPEGICKLIKLKILD 203

Xenopus laevis (taxid: 8355)

>sp|P08678|CYAA_YEAST Adenylate cyclase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYR1 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 36/234 (15%)

Query: 92   NITRLYLDETAIEEVPSSIKCLTNLKLLR------------INRCTRLKRVSTSICKLKS 139
            N+T L L    +E +P+    L NL+LL             IN CT L ++  S  K++S
Sbjct: 887  NLTILNLQCNELESLPAGFVELKNLQLLDLSSNKFMHYPEVINYCTNLLQIDLSYNKIQS 946

Query: 140  LIALSAY----GCLNLER----FPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETL 191
            L   + Y      +NL      F   L +M  L  +NL    I+  +     N   L+ L
Sbjct: 947  LPQSTKYLVKLAKMNLSHNKLNFIGDLSEMTDLRTLNLRYNRISSIK----TNASNLQNL 1002

Query: 192  GFSE--LDNLSDNIGNFKSFEYMGAHGSAIS-------QLPSLS---SGLVPLSASLLSG 239
              ++  + N  D +   ++ E      ++IS        + SL+   + L  +   LL+ 
Sbjct: 1003 FLTDNRISNFEDTLPKLRALEIQENPITSISFKDFYPKNMTSLTLNKAQLSSIPGELLTK 1062

Query: 240  LSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
            LS L  L LN   LT +PQEI  L+ L +L +  N LE +P  + Q+  L +LD
Sbjct: 1063 LSFLEKLELNQNNLTRLPQEISKLTKLVFLSVARNKLEYIPPELSQLKSLRTLD 1116

Plays essential roles in regulation of cellular metabolism by catalyzing the synthesis of a second messenger, cAMP.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 16/197 (8%)

Query: 103 IEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKME 162
           + ++P S+  L NL+ L +N      ++   I K   L +L  +  L     P  L K+ 
Sbjct: 142 VGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLS 201

Query: 163 HLNQINL-GRTTITEQRPSSFENVKGLETLGFSELD---NLSDNIGNFKSFEYMGAHGSA 218
            L  I + G   I+ Q PS   +   L  LG +E     NL  ++G  K  E +  + + 
Sbjct: 202 GLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTM 261

Query: 219 ISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALT-SIPQEIGYLSSLEWLHLRGNNL- 276
           I       SG +P   S L   S L  L L   +L+ SIP+EIG L+ LE L L  N+L 
Sbjct: 262 I-------SGEIP---SDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLV 311

Query: 277 EGLPASIKQISRLESLD 293
            G+P  I   S L+ +D
Sbjct: 312 GGIPEEIGNCSNLKMID 328

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9D9Q0|LRC69_MOUSE Leucine-rich repeat-containing protein 69 OS=Mus musculus GN=Lrrc69 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 27/210 (12%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKL------KSLIALSA 145
           N   L L+   I ++PS+++ L NLK L +         + SI K+       + + L  
Sbjct: 15  NTKILTLNGKRITKMPSTLEKLPNLKTLDLQ--------NNSISKVCPELRTLTQLTLLN 66

Query: 146 YGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSE--LDNLSDNI 203
            G  +L+  PE ++ +  L  ++L    I    P  F  +  L  L  ++  L +L   I
Sbjct: 67  LGNNHLQEVPEEIKYLTSLKNLHLFGNRICRIAPGVFNGLHRLIMLNLNDNRLTSLPQEI 126

Query: 204 GNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYL 263
           G  +S  Y+  + + ++ +P             L  L  L  LHLN   +  IP+EI +L
Sbjct: 127 GRLRSLTYLSLNRNNLTVIPKE-----------LCSLEHLSELHLNYNQIVYIPEEIKFL 175

Query: 264 SSLEWLHLRGNNLEGLPASIKQISRLESLD 293
            +L+ L L  NN+E LP  I  + +L  LD
Sbjct: 176 KNLQQLFLVRNNIEELPEEICHLEKLRVLD 205

Mus musculus (taxid: 10090)

>sp|Q6P9F7|LRC8B_HUMAN Leucine-rich repeat-containing protein 8B OS=Homo sapiens GN=LRRC8B PE=2 SV=2

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 21/207 (10%)

Query: 92  NITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN 150
           N+  LYL ++++  +P  +   L +L+ L ++       V  ++ K+ +L +L    C +
Sbjct: 539 NLRTLYL-KSSLSRIPQVVTDLLPSLQKLSLDNEGSKLVVLNNLKKMVNLKSLELISC-D 596

Query: 151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFE 210
           LER P S+  + +L++++L        R ++ + V+  E + F  L NLS       +  
Sbjct: 597 LERIPHSIFSLNNLHELDL--------RENNLKTVE--EIISFQHLQNLSCLKLWHNNIA 646

Query: 211 YMGAHGSAISQLPSLSSGL-----VPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSS 265
           Y+ A   A+S L  LS        +PL   L + L   ++L L+   LT IP+EI YLS+
Sbjct: 647 YIPAQIGALSNLEQLSLDHNNIENLPLQLFLCTKL---HYLDLSYNHLTFIPEEIQYLSN 703

Query: 266 LEWLHLRGNNLEGLPASIKQISRLESL 292
           L++  +  NN+E LP  + Q  +L+ L
Sbjct: 704 LQYFAVTNNNIEMLPDGLFQCKKLQCL 730

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
147787197	754	hypothetical protein VITISV_042806 [Viti	0.959	0.372	0.348	1e-32
147802475	1244	hypothetical protein VITISV_027841 [Viti	0.976	0.229	0.342	3e-30
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.744	0.151	0.376	2e-28
298205188	1027	unnamed protein product [Vitis vinifera]	0.945	0.269	0.334	6e-28
255563202	1158	leucine-rich repeat containing protein,	0.672	0.170	0.365	9e-28
359493269	1299	PREDICTED: TMV resistance protein N-like	0.822	0.185	0.341	4e-26
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.682	0.177	0.413	4e-26
224145021	1561	tir-nbs-lrr resistance protein [Populus	0.737	0.138	0.347	6e-26
147821215	1441	hypothetical protein VITISV_004613 [Viti	0.802	0.163	0.348	1e-25
359495276	1542	PREDICTED: TMV resistance protein N-like	0.802	0.152	0.348	2e-25

>gi|147787197|emb|CAN64645.1| hypothetical protein VITISV_042806 [Vitis vinifera]

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 171/359 (47%), Gaps = 78/359 (21%)

Query: 2   TDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILR 61
           T+AIE I LNLS +  I+++  AF+ M NLR+LK Y    S  M  + +L+         
Sbjct: 110 TEAIEGILLNLSRLMRIHISTEAFAMMKNLRLLKIYWDLESAFMREDNKLI--------- 160

Query: 62  SFPSNLHFVSPVTIDFTSCINLTDFPHISGNIT---RLYLDETAIEEVPSSIKCLTNLKL 118
            FPS +   +   ++F+ C  L  FP+I GN+     LYL  TAIEE+PSSI  LT L L
Sbjct: 161 CFPSIIDMKALEILNFSGCSGLKKFPNIQGNMENLLELYLASTAIEELPSSIGHLTGLVL 220

Query: 119 LRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQR 178
           L +  C  LK +STSICKLKSL  LS  GC  LE FPE +E M++L ++ L  T I E  
Sbjct: 221 LDLKWCKNLKSLSTSICKLKSLENLSLSGCSKLESFPEVMENMDNLKELLLDGTPI-EVL 279

Query: 179 PSSFENVKG------------------------LETL---GFSELDNLSDNIGNFKSFEY 211
           PSS E +KG                        LETL   G  +L+NL  N+G+ +    
Sbjct: 280 PSSIERLKGLVLLNLRKCKNLVSLSNGMCNLTSLETLIVSGCLQLNNLPRNLGSLQRLAQ 339

Query: 212 MGAHGSAISQLPS-----------LSSGLVPLSASLLSGLSLLYWLHLN----------- 249
           + A G+AI+Q P            +  G   L+ + L  L   + LH N           
Sbjct: 340 LHADGTAIAQPPDSIVLLRNLQVLIYPGCKILAPTSLGSLFSFWLLHGNSSNGIGLRLPS 399

Query: 250 --------------NCALT--SIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292
                         +C L   +IP  I  L SL+ L L  NN   +PA I +++ L+ L
Sbjct: 400 SFSSFRSLSNLDISDCKLIEGAIPNGICSLISLKKLDLSRNNFLSIPAGISELTNLKDL 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera]

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 171/362 (47%), Gaps = 76/362 (20%)

Query: 7   SIFLNLSTIKGIN----LNLRAFSNMSNLR--VLKFYIPEISVHMSIEEQ----LLDSKG 56
           ++  NL+TI+  N    ++L  FS+M NL   VL+     + V  SIE       L+ K 
Sbjct: 527 TVLDNLNTIELSNSQHLIHLPNFSSMPNLERLVLEGCTSFLEVDPSIEVLNKLIFLNLKN 586

Query: 57  CKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNI---TRLYLDETAIEEVPSSIKCL 113
           CK LRSFP ++       +  + C +L +FP I GN+   + LYLD TAI E+P SI  L
Sbjct: 587 CKKLRSFPRSIKLECLKYLSLSGCSDLKNFPEIQGNMQHLSELYLDGTAISELPFSIGYL 646

Query: 114 TNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT 173
           T L LL +  C RLK + +SICKLKSL  L    C  LE FPE +E MEHL ++ L  T 
Sbjct: 647 TGLILLDLENCKRLKSLPSSICKLKSLETLILSACSKLESFPEIMENMEHLKKLLLDGTA 706

Query: 174 ITEQRPS-----------------------SFENVKGLETL---GFSELDNLSDNIGNFK 207
           + +  PS                       S  N+K LETL   G S+L  L +N+G+ +
Sbjct: 707 LKQLHPSIEHLNGLVSLNLRDCKNLATLPCSIGNLKSLETLIVSGCSKLQQLPENLGSLQ 766

Query: 208 SFEYMGAHGSAISQ-----------------------------------LPSLSSGLVPL 232
               + A G+ + Q                                   LP  SS  + L
Sbjct: 767 CLVKLQADGTLVRQPPSSIVLLRNLEILSFGGCKGLASNSWSSLFSFWLLPRKSSDTIGL 826

Query: 233 SASLLSGLSLLYWLHLNNCALT--SIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLE 290
               LSGL  L  L +++C L   ++P +I  LSSLE L+L  NN   LPA I ++S+L 
Sbjct: 827 QLPSLSGLCSLRELDISDCNLMEGAVPFDICNLSSLETLNLSRNNFFSLPAGISKLSKLR 886

Query: 291 SL 292
            L
Sbjct: 887 FL 888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/242 (37%), Positives = 127/242 (52%), Gaps = 24/242 (9%)

Query: 52   LDSKGCKILRSFPSNLHFVSPV-TIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSI 110
            LD  GC  L++ PS +  +  +  +D + C ++T+FP +S NI  LYLD TAI E+PSSI
Sbjct: 827  LDLVGCNRLKNLPSAVSKLGCLEKLDLSGCSSITEFPKVSRNIRELYLDGTAIREIPSSI 886

Query: 111  KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG 170
            +CL  L  L +  C + + + +SICKLK L  L+  GCL    FPE LE M  L  + L 
Sbjct: 887  ECLCELNELHLRNCKQFEILPSSICKLKKLRRLNLSGCLQFRDFPEVLEPMVCLRYLYLE 946

Query: 171  RTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLV 230
            +T IT + PS   N+KGL  L           +GN K  E +                 +
Sbjct: 947  QTRIT-KLPSPIGNLKGLACL----------EVGNCKYLEDIHCFVG------------L 983

Query: 231  PLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLE 290
             LS      L  L  L+L+ C+L+ +P  +G LSSLE L L GNNL  +P SI ++  L+
Sbjct: 984  QLSKRHRVDLDCLRKLNLDGCSLSEVPDSLGLLSSLEVLDLSGNNLRTIPISINKLFELQ 1043

Query: 291  SL 292
             L
Sbjct: 1044 YL 1045

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205188|emb|CBI17247.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 168/308 (54%), Gaps = 31/308 (10%)

Query: 1   RTDAIESI-FLNLSTIKGINLNLRAFSNMSNLRVL------KFYIPEISVHMSIEEQLLD 53
           R + +E + FLNLS  +   L   +FSNM NL  L         + + S+    +  +L+
Sbjct: 492 RNERLEQLKFLNLSGSR--QLTETSFSNMPNLETLILADCTSLNVVDPSIGDLKKLTVLN 549

Query: 54  SKGCKILRSFPSNLHFVSPV-TIDFTSCINLTDFPHISGN----ITRLYLDETAIEEVPS 108
             GC+ L S PS++ ++  +  ++  +C NL +FP + G+    ++ L LD   I+E+PS
Sbjct: 550 LLGCENLTSLPSSIQYLDSLEAMNLMTCSNLEEFPEMKGSPMKALSDLLLDGCGIKELPS 609

Query: 109 SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQIN 168
           SI+ LT LK L +++C  L+ + +SIC+LKSL+ L  +GC NL+ FPE +E M+ L  ++
Sbjct: 610 SIELLTRLKRLYLSKCKNLRSLPSSICRLKSLVQLDLHGCSNLDTFPEIMEDMKCLESLD 669

Query: 169 LGRTTITEQRPSSFENVKGLETLGFSE-LDNLSDNIGNFKSFEYMGAHGSAISQLPSLSS 227
           + R++  ++ PSS +N+K L  L  S  L  L D+I N +S    G   S + + P    
Sbjct: 670 I-RSSGIKELPSSIQNLKSLLRLDMSNCLVTLPDSIYNLRSVTLRGC--SNLEKFPKNPE 726

Query: 228 GLVPLSASLLSGLSLLYWLHLNNCALT--SIPQEIGYLSSLEWLHLRGNNLEGLPASIKQ 285
           G   +             L  ++C L   SIP EI  L+SLE L+L  N++  +P+ I Q
Sbjct: 727 GFYSIVQ-----------LDFSHCNLMEGSIPTEIWDLNSLEILNLSWNHMVSIPSGISQ 775

Query: 286 ISRLESLD 293
           + +L+ LD
Sbjct: 776 LCKLDFLD 783

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 122/235 (51%), Gaps = 38/235 (16%)

Query: 58  KILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLK 117
           K +RSFP+ +   S  T+D + C NL  FP +S NI  LYL+ETAI+EVP SI+ L+ L 
Sbjct: 688 KNIRSFPTTIDLQSLETLDLSGCSNLKIFPEVSRNIRYLYLNETAIQEVPLSIEHLSKLV 747

Query: 118 LLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQ 177
           +L +  C  L+ + ++I KLKSL  L   GC  LE FPE LE   HL  ++L  T +   
Sbjct: 748 VLNMKNCNELECIPSTIFKLKSLGVLILSGCKKLESFPEILETTNHLQHLSLDETAMV-N 806

Query: 178 RPSSFENVKGLETLGFSE---LDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSA 234
            P +F N+K L  L FS+   L  L  N+ N KS   + A G                  
Sbjct: 807 LPDTFCNLKALNMLNFSDCSKLGKLPKNMKNLKSLAELRAGG------------------ 848

Query: 235 SLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRL 289
                           C L+++P ++ YLSS+  L+L G+N + +PA I Q+S+L
Sbjct: 849 ----------------CNLSTLPADLKYLSSIVELNLSGSNFDTMPAGINQLSKL 887

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493269|ref|XP_003634556.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 147/310 (47%), Gaps = 69/310 (22%)

Query: 51   LLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRL---YLDETAIEEVP 107
            LL+ K CK L SFPS +   +   ++F+ C  L  FP I GN+  L   +L  TAIEE+P
Sbjct: 695  LLNLKNCKKLSSFPSIIDMKALEILNFSGCSGLKKFPDIRGNMDHLLELHLASTAIEELP 754

Query: 108  SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQI 167
            SSI  +T L LL + RC  LK + TSIC+LKSL  L   GC  LE FPE +  ME+L ++
Sbjct: 755  SSIGHITRLVLLDLKRCKNLKSLPTSICRLKSLEYLFLSGCSKLENFPEVMVDMENLKEL 814

Query: 168  NLGRTTITEQRPSSFENVKG------------------------LETL---GFSELDNLS 200
             L  T+I E  PSS + +KG                        LETL   G S+L+NL 
Sbjct: 815  LLDGTSI-EGLPSSIDRLKGLVLLNMRKCQNLVSLPKGMCKLTSLETLIVSGCSQLNNLP 873

Query: 201  DNIGNFKSFEYMGAHGSAISQLPS-----------LSSGLVPLSASLLSGLSLLYWLHLN 249
             N+G+ +    + A G+AI+Q P            +  G   L+ + L  L   + +H N
Sbjct: 874  RNLGSLQRLAQLHADGTAITQPPESIVLLRNLQVLIYPGCKILAPTSLGSLFSFWLMHRN 933

Query: 250  --------------------NCALT-------SIPQEIGYLSSLEWLHLRGNNLEGLPAS 282
                                N  L+       +IP +I  L SL+ L L  NN   +PA 
Sbjct: 934  SSNGVGLRLPSSFFSFRSFTNLDLSDLKLIEGAIPNDICSLISLKKLDLSRNNFLSIPAG 993

Query: 283  IKQISRLESL 292
            I Q++ L+ L
Sbjct: 994  ISQLTNLKDL 1003

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/215 (41%), Positives = 117/215 (54%), Gaps = 15/215 (6%)

Query: 50  QLLDSKGCKILRSFPSNLHFVSPV--TIDFTSCINLTDFPHISGNITRLYLDETAIEEVP 107
           ++LD   C  +R  P+ +   SPV   +D   C N+T FP ISGNI  LYL  TAIEEVP
Sbjct: 710 RILDLYHCINVRICPA-ISGNSPVLRKVDLQFCANITKFPEISGNIKYLYLQGTAIEEVP 768

Query: 108 SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQI 167
           SSI+ LT L  L +  C +L  + +SICKLKSL  L   GC  LE FPE +E ME L ++
Sbjct: 769 SSIEFLTALVRLYMTNCKQLSSIPSSICKLKSLEVLGLSGCSKLENFPEIMEPMESLRRL 828

Query: 168 NLGRTTITEQRPSSFENVKGLE--TLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSL 225
            L  T I E  PSS + +K L    LG + ++ LS +I   KS  ++   G+AI +LPS 
Sbjct: 829 ELDATAIKE-LPSSIKYLKFLTQLKLGVTAIEELSSSIAQLKSLTHLDLGGTAIKELPSS 887

Query: 226 SSGLVPLSASLLSGLSL---------LYWLHLNNC 251
              L  L    LSG  +         L  L +N+C
Sbjct: 888 IEHLKCLKHLDLSGTGIKELPELPSSLTALDVNDC 922

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/242 (34%), Positives = 119/242 (49%), Gaps = 26/242 (10%)

Query: 52   LDSKGCKILRSFPSNL-HFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSI 110
            LD  GC  L++ PS +   V    +D + C N+T+FP +S  I  LYL+ TAI E+PSSI
Sbjct: 813  LDLGGCNRLKNLPSAVSKLVCLEKLDLSGCSNITEFPKVSNTIKELYLNGTAIREIPSSI 872

Query: 111  KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG 170
            +CL  L  L +  C + + + +SICKL+ L  L+  GC+    FPE LE M  L  + L 
Sbjct: 873  ECLFELAELHLRNCKQFEILPSSICKLRKLQRLNLSGCVQFRDFPEVLEPMVCLRYLYLE 932

Query: 171  RTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLV 230
            +T IT + PS   N+KGL  L      +L D                           +V
Sbjct: 933  QTRIT-KLPSPIGNLKGLACLEVGNCQHLRD------------------------IECIV 967

Query: 231  PLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLE 290
             L       L  L  L+L+ C +  +P  +G +SSLE L L GNN   +P SI ++  L+
Sbjct: 968  DLQLPERCKLDCLRKLNLDGCQIWEVPDSLGLVSSLEVLDLSGNNFRSIPISINKLFELQ 1027

Query: 291  SL 292
             L
Sbjct: 1028 YL 1029

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821215|emb|CAN66453.1| hypothetical protein VITISV_004613 [Vitis vinifera]

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 142/304 (46%), Gaps = 69/304 (22%)

Query: 57   CKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNIT---RLYLDETAIEEVPSSIKCL 113
            CK L  FPS +   +   ++F+SC  L  FP+I GN+     LYL  TAIEE+PSSI  L
Sbjct: 843  CKKLICFPSIIDMKALEILNFSSCSGLKKFPNIQGNMENLLELYLASTAIEELPSSIGHL 902

Query: 114  TNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT 173
            T L LL +  C  LK + TSICKLKSL  LS  GC  LE FPE  E M++L ++ L  T 
Sbjct: 903  TGLVLLDLKWCKNLKSLPTSICKLKSLENLSLSGCSKLESFPEVTENMDNLKELLLDGTP 962

Query: 174  ITEQRPSSFENVKG------------------------LETL---GFSELDNLSDNIGNF 206
            I E  PSS E +KG                        LETL   G S+L+NL  N+G+ 
Sbjct: 963  I-EVLPSSIERLKGLILLNLRKCKNLVSLSNGMCNLTSLETLIVSGCSQLNNLPRNLGSL 1021

Query: 207  KSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLL----------YW----------- 245
            +    + A G+AI+Q P     L  L   +  G  +L          +W           
Sbjct: 1022 QCLAQLHADGTAIAQPPDSIVLLRNLQVLIYPGCKILAPNSLGSLFSFWLLHGNSPNGIG 1081

Query: 246  ---------------LHLNNCALT--SIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISR 288
                           L +++C L   +IP  I  L SL+ L L  NN   +PA I +++ 
Sbjct: 1082 LRLPSSFSSFRSLSNLDISDCKLIEGAIPNGICSLISLKKLDLSRNNFLSIPAGISELTN 1141

Query: 289  LESL 292
            L+ L
Sbjct: 1142 LKDL 1145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495276|ref|XP_002276447.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 142/304 (46%), Gaps = 69/304 (22%)

Query: 57   CKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNIT---RLYLDETAIEEVPSSIKCL 113
            CK L  FPS +   +   ++F+ C  L  FP+I GN+     LYL  TAIEE+PSSI  L
Sbjct: 944  CKKLICFPSIIDMKALEILNFSGCSGLKKFPNIQGNMENLLELYLASTAIEELPSSIGHL 1003

Query: 114  TNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT 173
            T L LL +  C  LK +STSICKLKSL  LS  GC  LE FPE +E M++L ++ L  T 
Sbjct: 1004 TGLVLLDLKWCKNLKSLSTSICKLKSLENLSLSGCSKLESFPEVMENMDNLKELLLDGTP 1063

Query: 174  ITEQRPSSFENVKG------------------------LETL---GFSELDNLSDNIGNF 206
            I E  PSS E +KG                        LETL   G  +L+NL  N+G+ 
Sbjct: 1064 I-EVLPSSIERLKGLVLLNLRKCKNLVSLSNGMCNLTSLETLIVSGCLQLNNLPRNLGSL 1122

Query: 207  KSFEYMGAHGSAISQLPS-----------LSSGLVPLSASLLSGLSLLYWLHLN------ 249
            +    + A G+AI+Q P            +  G   L+ + L  L   + LH N      
Sbjct: 1123 QRLAQLHADGTAITQPPDSIVLLRNLQVLIYPGCKILAPTSLGSLFSFWLLHGNSSNGIG 1182

Query: 250  -------------------NCALT--SIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISR 288
                               +C L   +IP  I  L SL+ L L  NN   +PA I +++ 
Sbjct: 1183 LRLPSSFSSFRSLSNLDISDCKLIEGAIPNGICSLISLKKLDLSRNNFLSIPAGISELTN 1242

Query: 289  LESL 292
            L+ L
Sbjct: 1243 LKDL 1246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.488	0.117	0.375	1.2e-24
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.546	0.123	0.357	2.9e-24
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.569	0.088	0.382	2e-20
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.610	0.147	0.338	1e-19
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.662	0.143	0.312	4.8e-19
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.703	0.172	0.300	9.2e-18
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.805	0.181	0.313	6.6e-17
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.508	0.121	0.377	5.6e-16
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.546	0.126	0.317	6.8e-16
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.529	0.126	0.329	2.4e-15

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 54/144 (37%), Positives = 74/144 (51%)

Query:    52 LDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIK 111
             L+ + C  LRS P  +   S  T+  + C +L  FP IS N+  L LD T I+ +P SI+
Sbjct:   695 LNLRDCTSLRSLPKGIKTQSLQTLILSGCSSLKKFPLISENVEVLLLDGTVIKSLPESIQ 754

Query:   112 CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171
                 L LL +  C +LK +S+ + KLK L  L   GC  LE FPE  E ME L  + +  
Sbjct:   755 TFRRLALLNLKNCKKLKHLSSDLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLMDD 814

Query:   172 TTITEQ-RPSSFENVKGLETLGFS 194
             T+ITE  +     N+K     G S
Sbjct:   815 TSITEMPKMMHLSNIKTFSLCGTS 838

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
 Identities = 60/168 (35%), Positives = 92/168 (54%)

Query:    26 SNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL-HFVSPVTIDFTSCINLT 84
             S+   LR L  Y+  +   +S++   LD  GC+ L + P  L +  S  T++ + C+N+ 
Sbjct:   747 SDCQRLRTLPSYLGHL---VSLKSLNLD--GCRRLENLPDTLQNLTSLETLEVSGCLNVN 801

Query:    85 DFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALS 144
             +FP +S +I  L + ET+IEE+P+ I  L+ L+ L I+   RL  +  SI +L+SL  L 
Sbjct:   802 EFPRVSTSIEVLRISETSIEEIPARICNLSQLRSLDISENKRLASLPVSISELRSLEKLK 861

Query:   145 AYGCLNLERFP-ESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETL 191
               GC  LE FP E  + M  L   +L RT+I E  P +  N+  LE L
Sbjct:   862 LSGCSVLESFPLEICQTMSCLRWFDLDRTSIKEL-PENIGNLVALEVL 908

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 65/170 (38%), Positives = 93/170 (54%)

Query:    52 LDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIK 111
             L+ KGC  L + PS +   S   ++ + C  L +FP IS N+  LY+  T I+E+PSSIK
Sbjct:  1310 LNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSIK 1369

Query:   112 CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171
              L  L+ L +     LK + TSI KLK L  L+  GC++LERFP+S  +M+ L  ++L R
Sbjct:  1370 NLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSR 1429

Query:   172 TTITEQRPSSFENVKGLETLGFSELDNLSDNIGN--FKSFEYMGAHGSAI 219
             T I E  PSS   +  L+ L F +    S  + N    S E M +  S +
Sbjct:  1430 TDIKEL-PSSISYLTALDELLFVDSRRNSPVVTNPNANSTELMPSESSKL 1478

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 64/189 (33%), Positives = 93/189 (49%)

Query:     6 ESI-FLNLSTIKGINLNLRAFSNMSNLRVLKFY-IPEISVHMSIEEQ----LLDSKGCKI 59
             ES+ +++L   K + LNL   S   NL  L       + +  S+++      L+ + C  
Sbjct:   634 ESLRWVDLGQSKDL-LNLSGLSRAKNLERLDLEGCTSLDLLGSVKQMNELIYLNLRDCTS 692

Query:    60 LRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLL 119
             L S P      S  T+  + C+ L DF  IS +I  L+L+ TAIE V   I+ L +L LL
Sbjct:   693 LESLPKGFKIKSLKTLILSGCLKLKDFHIISESIESLHLEGTAIERVVEHIESLHSLILL 752

Query:   120 RINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRP 179
              +  C +LK +   + KLKSL  L   GC  LE  P   EKME L  + +  T+I +Q P
Sbjct:   753 NLKNCEKLKYLPNDLYKLKSLQELVLSGCSALESLPPIKEKMECLEILLMDGTSI-KQTP 811

Query:   180 --SSFENVK 186
               S   N+K
Sbjct:   812 EMSCLSNLK 820

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
 Identities = 65/208 (31%), Positives = 100/208 (48%)

Query:    10 LNLS---TIKGINLN-LRAFS-NMSNLRVLKFYIPEI--SVHMSIEEQLLDSKGCKILRS 62
             +NLS    IK   L   + F  N+  L +    I E+  S+H+S  E +LD   CK L++
Sbjct:   510 INLSGCVEIKSTQLEEFQGFPRNLKELYLSGTGIREVTSSIHLSSLE-VLDLSNCKRLQN 568

Query:    63 FPSNL-HFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRI 121
              P    +  S + +  + C  L +   +  N+  LYL  T+I EVPSSI  LT L +   
Sbjct:   569 LPMGKGNLASLIKLMLSGCSKLQNIQDLPTNLKELYLAGTSIREVPSSICHLTQLVVFDA 628

Query:   122 NRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSS 181
               C +L+ +   +  L SL  L   GC  L   P+    + HLN   L  T I ++ PSS
Sbjct:   629 ENCKKLQDLPMGMGNLISLTMLILSGCSELRSIPDLPRNLRHLN---LAETPI-KKLPSS 684

Query:   182 FENVKGLETLGFSELDNLSD-NIGNFKS 208
             FE++  L +L  +  + L    + +F+S
Sbjct:   685 FEDLTKLVSLDLNHCERLQHLQMESFES 712

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 9.2e-18, Sum P(2) = 9.2e-18
 Identities = 65/216 (30%), Positives = 102/216 (47%)

Query:     3 DAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFY----IPEISVHMSIEEQL--LDSKG 56
             DA +  ++NL+  K +N  L       NL+ L       + E+ V M   + L  L+ +G
Sbjct:   658 DAPKLKWVNLNHSKKLN-TLAGLGKAQNLQELNLEGCTALKEMHVDMENMKFLVFLNLRG 716

Query:    57 CKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNL 116
             C  L+S P  +  +S  T+  + C     F  IS  +  LYLD TAI+E+P  I  L  L
Sbjct:   717 CTSLKSLPE-IQLISLKTLILSGCSKFKTFQVISDKLEALYLDGTAIKELPCDIGRLQRL 775

Query:   117 KLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITE 176
              +L +  C +LKR+  S+ +LK+L  L   GC  L  FPE+   M  L  + L  T I +
Sbjct:   776 VMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFPETWGNMSRLEILLLDETAIKD 835

Query:   177 QRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYM 212
               P    +V+ L      ++  L D +  F   +++
Sbjct:   836 M-PKIL-SVRRLCLNKNEKISRLPDLLNKFSQLQWL 869

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 6.6e-17, P = 6.6e-17
 Identities = 80/255 (31%), Positives = 109/255 (42%)

Query:    52 LDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIK 111
             L+ K C  L   P++++  S  T+D + C +L  FP IS NI  LYL+ TAIEE+PS+I 
Sbjct:   825 LEMKECTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIG 884

Query:   112 CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171
              L  L  L + +CT L+ + T +  L SL  L   GC +L  FP   E ++ L   N   
Sbjct:   885 NLHRLVRLEMKKCTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISESIKWLYLEN--- 940

Query:   172 TTITEQRP--SSFENVKGLETLGFSELDNLSDNIGNFK---SFEYMGAHGSAIXXXXXXX 226
              T  E+ P  S   N+K L+      L  L   IGN +   SFE     G  +       
Sbjct:   941 -TAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDVNL 999

Query:   227 XXXXXXXXXXXXXXXXXXXXXXN-------NCALTSIPQEIGYLSSLEWLHLRG-NNLEG 278
                                   N       N A+  IP  IG L  L  L ++    LE 
Sbjct:  1000 SSLMILDLSGCSSLRTFPLISTNIVWLYLENTAIEEIPSTIGNLHRLVKLEMKECTGLEV 1059

Query:   279 LPASIKQISRLESLD 293
             LP  +  +S L  LD
Sbjct:  1060 LPTDVN-LSSLMILD 1073

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 5.6e-16, P = 5.6e-16
 Identities = 60/159 (37%), Positives = 87/159 (54%)

Query:     9 FLNLSTIK-GINLNLRAFSNMS---NLRVLKFYIPE--ISVHMSIEE--QL--LDSKGCK 58
             F NL  I   ++  L+ F N+S   NL  L  Y  +  ++V  SI+   +L  L+ + C 
Sbjct:   783 FGNLVNIDLSLSEKLKEFPNLSKVTNLDTLDLYGCKSLVTVPSSIQSLSKLTELNMRRCT 842

Query:    59 ILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKL 118
              L + P++++  S  T+D + C  LT FP IS NI RL LD+TAIEEVPS I     L  
Sbjct:   843 GLEALPTDVNLESLHTLDLSGCSKLTTFPKISRNIERLLLDDTAIEEVPSWIDDFFELTT 902

Query:   119 LRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPES 157
             L +  C RL+ +STSIC+LK +   +   C  L  F ++
Sbjct:   903 LSMKGCKRLRNISTSICELKCIEVANFSDCERLTEFDDA 941

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 6.8e-16, Sum P(2) = 6.8e-16
 Identities = 52/164 (31%), Positives = 86/164 (52%)

Query:    12 LSTIKGINLNLRAFS-NMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFV 70
             L ++ G++   +  S N+     LK  +P++  +M      L+ +GC  L S P ++  V
Sbjct:   675 LHSLSGLSRAQKLQSINLEGCTGLKT-LPQVLQNME-SLMFLNLRGCTSLESLP-DITLV 731

Query:    71 SPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRV 130
                T+  ++C    +F  I+ N+  LYLD TAI+E+PS+I  L  L  L++  C  L  +
Sbjct:   732 GLRTLILSNCSRFKEFKLIAKNLEELYLDGTAIKELPSTIGDLQKLISLKLKDCKNLLSL 791

Query:   131 STSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTI 174
               SI  LK++  +   GC +LE FPE  + ++HL  + L  T I
Sbjct:   792 PDSIGNLKAIQEIILSGCSSLESFPEVNQNLKHLKTLLLDGTAI 835

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 54/164 (32%), Positives = 85/164 (51%)

Query:    52 LDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIK 111
             L+ KGC  L+S P  ++ VS   +  ++C NL +F  IS N+  LYLD T+I+E+P +  
Sbjct:   682 LNLKGCTSLKSLPE-INLVSLEILILSNCSNLKEFRVISQNLETLYLDGTSIKELPLNFN 740

Query:   112 CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171
              L  L +L +  C +LK     +  LK+L  L    C  L+ FP   E+++ L  + L  
Sbjct:   741 ILQRLVILNMKGCAKLKEFPDCLDDLKALKELILSDCWKLQNFPAICERIKVLEILRLDT 800

Query:   172 TTITEQRPSSFENVKGLETLGFSELDNLS---DNIGNFKSFEYM 212
             TTITE        +  L+ L  S+ D++S   DNI      +++
Sbjct:   801 TTITE-----IPMISSLQCLCLSKNDHISSLPDNISQLSQLKWL 839

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00190624 tir-nbs-lrr resistance protein (1436 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-15
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-12
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 76.1 bits (187), Expect = 2e-15
 Identities = 38/95 (40%), Positives = 52/95 (54%)

Query: 57  CKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNL 116
           C  L + P+ ++  S  ++D + C  L  FP IS NI+ L L  T IEEVP  I+  +NL
Sbjct: 812 CINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL 871

Query: 117 KLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
             L +N C  L+RVS +I KLK L  +    C  L
Sbjct: 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 65.3 bits (159), Expect = 8e-12
 Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 51/300 (17%)

Query: 12  LSTIKGINL----NLRAFSNMS---NLRVLKF----YIPEISVHMSIEEQL--LDSKGCK 58
           L+ ++ I+L    NL+   ++S   NL  LK      + E+   +    +L  LD   C+
Sbjct: 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692

Query: 59  ILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKL 118
            L   P+ ++  S   ++ + C  L  FP IS NI+ L LDETAIEE PS+++ L NL  
Sbjct: 693 NLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLR-LENLDE 751

Query: 119 LRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQR 178
           L +    + +++   +  L  L+ +             SL ++   +  +L       + 
Sbjct: 752 LILCE-MKSEKLWERVQPLTPLMTM----------LSPSLTRLFLSDIPSL------VEL 794

Query: 179 PSSFENVKGLETLGFSE---LDNLSDNIGNFKSFEYMG-AHGSAISQLPSLSSGLVPLSA 234
           PSS +N+  LE L       L+ L   I N +S E +  +  S +   P +S+       
Sbjct: 795 PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTN------ 847

Query: 235 SLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRG-NNLEGLPASIKQISRLESLD 293
                   +  L+L+   +  +P  I   S+L +L + G NNL+ +  +I ++  LE++D
Sbjct: 848 --------ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 90/332 (27%), Positives = 137/332 (41%), Gaps = 71/332 (21%)

Query: 2   TDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFY-------------IPEISVHMSIE 48
           T  +  I L++  I  ++++  AF  M NL  LKFY             +PE   ++  +
Sbjct: 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPK 590

Query: 49  EQLLDSKGCKILRSFPSNLHFVSPV-----------------------TIDFTSCINLTD 85
            +LL       LR  PSN    + V                        ID     NL +
Sbjct: 591 LRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE 649

Query: 86  FPHIS--GNITRLYL-DETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIA 142
            P +S   N+  L L D +++ E+PSSI+ L  L+ L ++RC  L+ + T I  LKSL  
Sbjct: 650 IPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708

Query: 143 LSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDN 202
           L+  GC  L+ FP+      +++ ++L  T I E+ PS+              L+NL   
Sbjct: 709 LNLSGCSRLKSFPDI---STNISWLDLDETAI-EEFPSNL------------RLENL--- 749

Query: 203 IGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGY 262
                  + +        +L      L PL   L   L+ L+    +  +L  +P  I  
Sbjct: 750 -------DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL--SDIPSLVELPSSIQN 800

Query: 263 LSSLEWLHL-RGNNLEGLPASIKQISRLESLD 293
           L  LE L +    NLE LP  I  +  LESLD
Sbjct: 801 LHKLEHLEIENCINLETLPTGI-NLESLESLD 831

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 21/196 (10%)

Query: 105 EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHL 164
           E+P+ I   ++LK+L +     + ++  S+  L SL  L+      + + P  L +M+ L
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Query: 165 NQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNI----GNFKSFEYMGAHGSA 218
             I LG   ++ + P     + GL +L   +L  +NL+  I    GN K+ +Y+  + + 
Sbjct: 215 KWIYLGYNNLSGEIPYE---IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 219 ISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALT-SIPQEIGYLSSLEWLHLRGNNLE 277
           +S       G +P S   +  L  L  L L++ +L+  IP+ +  L +LE LHL  NN  
Sbjct: 272 LS-------GPIPPS---IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321

Query: 278 G-LPASIKQISRLESL 292
           G +P ++  + RL+ L
Sbjct: 322 GKIPVALTSLPRLQVL 337

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 232 LSASLLSG-LSLLYWLHLNNCALT-SIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISR 288
            + S+  G +  L  L L+N  L+  IP +IG  SSL+ L L GN L G +P S+  ++ 
Sbjct: 130 FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189

Query: 289 LESL 292
           LE L
Sbjct: 190 LEFL 193

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 17/135 (12%)

Query: 164 LNQINLGRTTITEQRPSSFENVKGLETLGFSE---LDNLSDNIGNFKSFEYMGAHGSAIS 220
           L  +NL     T   P     +  LETL  S       + ++IG+F S + +   G+ + 
Sbjct: 120 LRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 221 QLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALT-SIPQEIGYLSSLEWLHLRGNNLEG- 278
                  G +P S   L+ L+ L +L L +  L   IP+E+G + SL+W++L  NNL G 
Sbjct: 178 -------GKIPNS---LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227

Query: 279 LPASIKQISRLESLD 293
           +P  I  ++ L  LD
Sbjct: 228 IPYEIGGLTSLNHLD 242

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 243 LYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD 293
           L  L L+N  LT IP      L +L+ L L GNNL  +   +   +  L SLD
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLD 54

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 15/202 (7%)

Query: 94  TRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLER 153
             L L    +  +PSS+  L +L LL  +  + L      +  L             L  
Sbjct: 50  LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDL--NLNRLRS 107

Query: 154 FPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETL--GFSELDNLSDNIGNFKSFEY 211
               L ++ +L  ++L    IT+  P        L+ L    +++++L   + N  + + 
Sbjct: 108 NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN 167

Query: 212 MGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL 271
           +    + +S LP L           LS LS L  L L+   ++ +P EI  LS+LE L L
Sbjct: 168 LDLSFNDLSDLPKL-----------LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDL 216

Query: 272 RGNNLEGLPASIKQISRLESLD 293
             N++  L +S+  +  L  L+
Sbjct: 217 SNNSIIELLSSLSNLKNLSGLE 238

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.58
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.55
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
PLN03150	623	hypothetical protein; Provisional	98.87
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.87
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
PLN03150	623	hypothetical protein; Provisional	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.55
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG4341	483	consensus F-box protein containing LRR [General fu	98.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
PRK15386	426	type III secretion protein GogB; Provisional	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.14
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.1
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.01
PRK15386	426	type III secretion protein GogB; Provisional	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG4341	483	consensus F-box protein containing LRR [General fu	97.8
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.74
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.67
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.61
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.67
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.43
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.42
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.21
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.14
KOG4308	478	consensus LRR-containing protein [Function unknown	95.46
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.43
smart00370	26	LRR Leucine-rich repeats, outliers.	94.43
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.99
KOG4308	478	consensus LRR-containing protein [Function unknown	92.77
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.62
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.85
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.35
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.19
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.51
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.81

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.6e-29  Score=244.99  Aligned_cols=286  Identities=21%  Similarity=0.245  Sum_probs=228.5

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEeccceee--ecc-----cceEEEeccCCcccccCCCCCCCcCceEEe
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISV--HMS-----IEEQLLDSKGCKILRSFPSNLHFVSPVTID   76 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~-----~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~   76 (293)
                      +|..+  |++++......+..|..+++|++|++++|.+..  +..     -.|++|++++|.+.+.+|.. ..++|++|+
T Consensus        70 ~v~~L--~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~l~~L~~L~  146 (968)
T PLN00113         70 RVVSI--DLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG-SIPNLETLD  146 (968)
T ss_pred             cEEEE--EecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc-ccCCCCEEE
Confidence            45555  888887666666789999999999999998752  221     12999999999887776653 345999999


Q ss_pred             ecCCcCCcccCCC---CCCccEEeccccccc-ccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCC
Q 039599           77 FTSCINLTDFPHI---SGNITRLYLDETAIE-EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE  152 (293)
Q Consensus        77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  152 (293)
                      +++|.+.+.+|..   +.+|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            9999877677754   457889999999875 778888999999999999998888888888899999999999998888


Q ss_pred             CCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCccCC-CCcC--
Q 039599          153 RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL-PSLS--  226 (293)
Q Consensus       153 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~--  226 (293)
                      .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|   +.+|..+..+++|++|++++|.+.+. |.+.  
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  306 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ  306 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence            88989999999999999999998888888999999999999988   56777888889999999999988765 5522  


Q ss_pred             -CCCccCccc----------ccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCC-CchhHhhcccCCCC
Q 039599          227 -SGLVPLSAS----------LLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESL  292 (293)
Q Consensus       227 -~~l~~l~~~----------~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~L~~l  292 (293)
                       ..++.|+++          .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++++ +|..++.+++|+.+
T Consensus       307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  385 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL  385 (968)
T ss_pred             CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence             445555543          15566778888888887775 77777778888888888888876 77777777666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=3e-29  Score=243.08  Aligned_cols=284  Identities=20%  Similarity=0.233  Sum_probs=236.0

Q ss_pred             eecCcccce-eechhhccCCccccEEEEeccceeeecc----cceEEEeccCCcccccCCCCCCCc-CceEEeecCCcCC
Q 039599           10 LNLSTIKGI-NLNLRAFSNMSNLRVLKFYIPEISVHMS----IEEQLLDSKGCKILRSFPSNLHFV-SPVTIDFTSCINL   83 (293)
Q Consensus        10 l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~   83 (293)
                      +|+++|... .++...+..+++|++|++++|.+.....    ..|++|++++|.+.+.+|..++.. +|++|++++|.+.
T Consensus        98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113         98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            489988765 4555567799999999999998863322    229999999999888888777644 9999999999877


Q ss_pred             cccCCCC---CCccEEeccccccc-ccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhh
Q 039599           84 TDFPHIS---GNITRLYLDETAIE-EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLE  159 (293)
Q Consensus        84 ~~~~~~~---~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  159 (293)
                      +.+|..+   .+|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.
T Consensus       178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence            7777654   47888899999875 6778888999999999999988888888888999999999999988888888899


Q ss_pred             ccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCccCC-CC-cC--CCCccC
Q 039599          160 KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL-PS-LS--SGLVPL  232 (293)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~--~~l~~l  232 (293)
                      .+++|++|++++|.+.+..|..+..+++|+.|++++|   +.+|..+..+++|+.|++++|.+.+. |. +.  ++++.|
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  337 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL  337 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence            9999999999999988888888888899999999888   56777888889999999999888765 44 22  556665


Q ss_pred             ccc----------ccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCC-CchhHhhcccCCCCC
Q 039599          233 SAS----------LLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESLD  293 (293)
Q Consensus       233 ~~~----------~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~L~~ld  293 (293)
                      +++          .++.+++|+.|++++|.+++ +|.++..+++|+.|++++|++.+ +|..+..+++|+.|+
T Consensus       338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~  410 (968)
T PLN00113        338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR  410 (968)
T ss_pred             ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence            553          25677899999999999987 88889999999999999999997 898899999988763

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=1e-27  Score=206.08  Aligned_cols=284  Identities=22%  Similarity=0.248  Sum_probs=170.8

Q ss_pred             EeecCcccceeechhhccCCccccEEEEeccceeeecccc-----eEEEeccCCcccccCCCCCCC-cCceEEeecCCcC
Q 039599            9 FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE-----EQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCIN   82 (293)
Q Consensus         9 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~   82 (293)
                      .||+++|..-.+++..|.++++|+.+++..|.+...|.++     ++.|++.+|.+...-.+.+.. +.|+.||++.|. 
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-  160 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-  160 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-
Confidence            4799999999999999999999999999999988555433     778888777654433333322 255666666555 


Q ss_pred             CcccCC-CC---CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccc--------
Q 039599           83 LTDFPH-IS---GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL--------  149 (293)
Q Consensus        83 ~~~~~~-~~---~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--------  149 (293)
                      +.++|. ++   .++++|+|++|.|+.+.. .|..+.+|..|.++.|.++...+..+.++++|+.|++.+|+        
T Consensus       161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt  240 (873)
T KOG4194|consen  161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT  240 (873)
T ss_pred             hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh
Confidence            333321 12   145555555555554433 44555555555555555444333444445555555555553        


Q ss_pred             ----------------cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccc
Q 039599          150 ----------------NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFE  210 (293)
Q Consensus       150 ----------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~  210 (293)
                                      +...-...|..+.++++|++..|.+...-...+..++.|+.|+++.|   ..-++.|...++|+
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~  320 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK  320 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence                            33222334555556666666666654433344556666777777766   22355666667777


Q ss_pred             eecccCCCccCCCC--cC--CCCccCccc----------ccCCccccceeecCCccCCc-CC---cccCCCCCCcEEecc
Q 039599          211 YMGAHGSAISQLPS--LS--SGLVPLSAS----------LLSGLSLLYWLHLNNCALTS-IP---QEIGYLSSLEWLHLR  272 (293)
Q Consensus       211 ~L~l~~~~~~~~~~--l~--~~l~~l~~~----------~~~~~~~L~~L~l~~n~i~~-l~---~~~~~~~~L~~L~l~  272 (293)
                      +|+++.|.+..++.  +.  ..++.|.++          .|.++.+|+.|||++|.+.. +.   ..+.++++|++|++.
T Consensus       321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT  400 (873)
T ss_pred             eEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence            77777777776632  21  333333332          26677777777777776554 22   235567777777777


Q ss_pred             CCcCCCCc-hhHhhcccCCCCC
Q 039599          273 GNNLEGLP-ASIKQISRLESLD  293 (293)
Q Consensus       273 ~n~l~~~p-~~l~~l~~L~~ld  293 (293)
                      +|+++.+| ..+.+++.|+.||
T Consensus       401 gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  401 GNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             CceeeecchhhhccCcccceec
Confidence            77777766 3455677776664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=2.5e-27  Score=203.74  Aligned_cols=286  Identities=21%  Similarity=0.230  Sum_probs=205.9

Q ss_pred             CceEEEEeecCcccceeechhhccCCccccEEEEeccceeeec------ccceEEEeccCCcccccCCCCCCCc-CceEE
Q 039599            3 DAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM------SIEEQLLDSKGCKILRSFPSNLHFV-SPVTI   75 (293)
Q Consensus         3 ~~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~l~~L~l~~~~~~~~~~~~~~~~-~L~~L   75 (293)
                      ++++.+  ++.+|-+..+....++.++.|+.|+++.|.+...+      ...+++|++++|.+.......|... +|.+|
T Consensus       125 ghl~~L--~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl  202 (873)
T KOG4194|consen  125 GHLEKL--DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL  202 (873)
T ss_pred             cceeEE--eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence            344444  66666666666666666666666666666554211      1236677777766655444444433 66666


Q ss_pred             eecCCcCCcccCCC----CCCccEEeccccccccc-CccccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599           76 DFTSCINLTDFPHI----SGNITRLYLDETAIEEV-PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN  150 (293)
Q Consensus        76 ~l~~~~~~~~~~~~----~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  150 (293)
                      .++.|+ ++.+|..    +++|+.|+|..|.|..+ --.|.++++|+.|.+..|.+..-..+.+..+.++++|++..|++
T Consensus       203 kLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  203 KLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             ecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence            777666 4444422    33566667777766544 23566777777777777666555556677788899999999988


Q ss_pred             CCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccCCCC--c
Q 039599          151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQLPS--L  225 (293)
Q Consensus       151 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~~~~--l  225 (293)
                      ...-..++..+++|+.|++++|.+..+.++.++.+++|++|+++.|  .+++ ..+..+..|++|.+++|.+..+..  +
T Consensus       282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af  361 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF  361 (873)
T ss_pred             hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence            8777778889999999999999998888889999999999999998  4443 356678889999999999888743  1


Q ss_pred             --CCCCccCccc-------------ccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC-CchhHhhccc
Q 039599          226 --SSGLVPLSAS-------------LLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG-LPASIKQISR  288 (293)
Q Consensus       226 --~~~l~~l~~~-------------~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~  288 (293)
                        .++++.|+++             .|.++++|+.|++.||++..+|. ++.++++|+.|||.+|.+.+ -|..|..+ +
T Consensus       362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~  440 (873)
T KOG4194|consen  362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-E  440 (873)
T ss_pred             HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-h
Confidence              1667777764             28899999999999999999885 78999999999999999987 56666665 5


Q ss_pred             CCCC
Q 039599          289 LESL  292 (293)
Q Consensus       289 L~~l  292 (293)
                      |+.|
T Consensus       441 Lk~L  444 (873)
T KOG4194|consen  441 LKEL  444 (873)
T ss_pred             hhhh
Confidence            5543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=2.5e-27  Score=205.60  Aligned_cols=268  Identities=21%  Similarity=0.327  Sum_probs=169.8

Q ss_pred             ecCcccceeechhhccCCccccEEEEecccee---eecccc----eEEEeccCCcccccCCCCCCCc-CceEEeecCCcC
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEIS---VHMSIE----EQLLDSKGCKILRSFPSNLHFV-SPVTIDFTSCIN   82 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~----l~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~   82 (293)
                      .+++|+...+. +.++.++.|+.+.+..|++.   ++..+.    |..|++++|+ ++..|..+... ++-+|++++|. 
T Consensus        61 s~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-  137 (1255)
T KOG0444|consen   61 SMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-  137 (1255)
T ss_pred             hhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-
Confidence            55666555554 36667777777777766654   222222    7778888876 45567666555 77788888887 


Q ss_pred             CcccCCCCC----CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccC-CCCChh
Q 039599           83 LTDFPHISG----NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL-ERFPES  157 (293)
Q Consensus        83 ~~~~~~~~~----~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~  157 (293)
                      +..+|..+.    .|-+|||++|.++.+|+.+.++..|++|.+++|.+....-.-+..++.|+.|++++.+.+ ..+|..
T Consensus       138 IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts  217 (1255)
T KOG0444|consen  138 IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS  217 (1255)
T ss_pred             cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence            666665432    455668888888888887777777777777776543222222333444444444444332 234444


Q ss_pred             hhccccCCceecCCCcccccCCCccccc-----------------------ccCceecCCCC--ccccccccCcccccee
Q 039599          158 LEKMEHLNQINLGRTTITEQRPSSFENV-----------------------KGLETLGFSEL--DNLSDNIGNFKSFEYM  212 (293)
Q Consensus       158 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~-----------------------~~L~~L~l~~~--~~l~~~~~~l~~L~~L  212 (293)
                      +..+.+|..++++.|.+. .+|+.+.++                       .+|++|+++.|  ..+|+.+.+++.|+.|
T Consensus       218 ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKL  296 (1255)
T ss_pred             hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHH
Confidence            444444444444444442 344444444                       44555555544  4445555555555555


Q ss_pred             cccCCCc--cCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCC
Q 039599          213 GAHGSAI--SQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLE  290 (293)
Q Consensus       213 ~l~~~~~--~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~  290 (293)
                      .+++|++  .++|.           .++.+.+|+.+..++|.+.-+|..++.|+.|+.|.|++|++.++|+.+.-++.|+
T Consensus       297 y~n~NkL~FeGiPS-----------GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~  365 (1255)
T KOG0444|consen  297 YANNNKLTFEGIPS-----------GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLK  365 (1255)
T ss_pred             HhccCcccccCCcc-----------chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcc
Confidence            5555543  22333           3677888999999999888899999999999999999999999999998888888


Q ss_pred             CCC
Q 039599          291 SLD  293 (293)
Q Consensus       291 ~ld  293 (293)
                      +||
T Consensus       366 vLD  368 (1255)
T KOG0444|consen  366 VLD  368 (1255)
T ss_pred             eee
Confidence            776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=7.7e-26  Score=196.43  Aligned_cols=282  Identities=17%  Similarity=0.240  Sum_probs=176.9

Q ss_pred             eEEEEeecCcccce-eechhhccCCccccEEEEecccee-eecccc----eEEEeccCCcccccCCCCCCCcCceEEeec
Q 039599            5 IESIFLNLSTIKGI-NLNLRAFSNMSNLRVLKFYIPEIS-VHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFT   78 (293)
Q Consensus         5 ~~~i~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~   78 (293)
                      |++|  |+++|+-. +.-+.....|+++++|.+....+. ++..++    |++|.+++|......-+.-..+.|+.++++
T Consensus         9 VrGv--DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R   86 (1255)
T KOG0444|consen    9 VRGV--DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR   86 (1255)
T ss_pred             eecc--cccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence            5677  99988554 222347788899999999876654 222332    788888888765544444445577777777


Q ss_pred             CCcCC-cccCCCCC---CccEEecccccccccCccccCCCCCCEEEeccCccccccc-cccccccccceecccccccCCC
Q 039599           79 SCINL-TDFPHISG---NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNLER  153 (293)
Q Consensus        79 ~~~~~-~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~  153 (293)
                      +|..- ..+|..+.   .|+.|||++|++.++|..+....++-+|++++|++.. +| ..+.++..|-.|++++| ....
T Consensus        87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~N-rLe~  164 (1255)
T KOG0444|consen   87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNN-RLEM  164 (1255)
T ss_pred             ccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccc-hhhh
Confidence            77632 24565544   4566688888888888877777777888888876544 44 33456777777888877 4456


Q ss_pred             CChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC----ccccccccCccccceecccCCCccCCCC-cC--
Q 039599          154 FPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL----DNLSDNIGNFKSFEYMGAHGSAISQLPS-LS--  226 (293)
Q Consensus       154 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~----~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~--  226 (293)
                      +|+.+..+..|++|.+++|.+...-...+-.+++|++|.++++    ..+|..+..+.+|..++++.|.+..+|. +.  
T Consensus       165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l  244 (1255)
T KOG0444|consen  165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL  244 (1255)
T ss_pred             cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhh
Confidence            6777777888888888887764332233344556666666665    3455556666666666666666666555 11  


Q ss_pred             CCCccCcccc---------cCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCC--CCchhHhhcccCC
Q 039599          227 SGLVPLSASL---------LSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLE--GLPASIKQISRLE  290 (293)
Q Consensus       227 ~~l~~l~~~~---------~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~--~~p~~l~~l~~L~  290 (293)
                      .+++.|+++.         .+.+.+|++|+++.|+++.+|++++.+++|+.|.+.+|+++  ++|..++.+..|+
T Consensus       245 ~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  245 RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             hhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence            2222222221         23445566666666666666666666666666666666544  4666666655554

>PLN03210 Resistant to P

Probab=99.90  E-value=2.8e-22  Score=195.88  Aligned_cols=288  Identities=25%  Similarity=0.380  Sum_probs=196.7

Q ss_pred             CCCceEEEEeecCcccceeechhhccCCccccEEEEecccee--------eecc-----cceEEEeccCCcccccCCCCC
Q 039599            1 RTDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEIS--------VHMS-----IEEQLLDSKGCKILRSFPSNL   67 (293)
Q Consensus         1 ~~~~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------~~~~-----~~l~~L~l~~~~~~~~~~~~~   67 (293)
                      +|..|++|++|++......+...+|..|++|+.|.+..+...        .+..     -.++.|.+.+++ ...+|..+
T Consensus       530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f  608 (1153)
T PLN03210        530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF  608 (1153)
T ss_pred             ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC
Confidence            367899999999999888999999999999999999765321        1111     128888888876 46677777


Q ss_pred             CCcCceEEeecCCcCCcccCCC---CCCccEEeccccc-ccccCccccCCCCCCEEEeccCcccccccccccccccccee
Q 039599           68 HFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETA-IEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIAL  143 (293)
Q Consensus        68 ~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  143 (293)
                      ...+|+.|++.+|. +..++.+   +.+|+.|+++++. +..+|. ++.+++|++|++++|.....+|..+..+++|+.|
T Consensus       609 ~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            66688888888776 4444432   3467777777654 455553 6667777777777776666677777777777777


Q ss_pred             cccccccCCCCChhhhccccCCceecCCCcccc--------------------cCCCcc---------------------
Q 039599          144 SAYGCLNLERFPESLEKMEHLNQINLGRTTITE--------------------QRPSSF---------------------  182 (293)
Q Consensus       144 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------~~~~~~---------------------  182 (293)
                      ++++|...+.+|..+ .+++|+.|++++|....                    .+|..+                     
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence            777776666665543 45555555555543211                    222211                     


Q ss_pred             ---------cccccCceecCCCC---ccccccccCccccceecccCCC-ccCCCC-c-CCCCccCcccc---c----CCc
Q 039599          183 ---------ENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSA-ISQLPS-L-SSGLVPLSASL---L----SGL  240 (293)
Q Consensus       183 ---------~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~-~~~~~~-l-~~~l~~l~~~~---~----~~~  240 (293)
                               ...++|+.|++++|   ..+|..++++++|+.|++++|. +..+|. + .+.|+.|+++.   +    ...
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~  845 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS  845 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc
Confidence                     01235677777766   4577778888899999998874 555555 2 24566665542   1    123


Q ss_pred             cccceeecCCccCCcCCcccCCCCCCcEEeccCC-cCCCCchhHhhcccCCCC
Q 039599          241 SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGN-NLEGLPASIKQISRLESL  292 (293)
Q Consensus       241 ~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n-~l~~~p~~l~~l~~L~~l  292 (293)
                      .+|++|++++|.|+.+|.++..+++|+.|++++| +++.+|..+..+++|+.+
T Consensus       846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L  898 (1153)
T PLN03210        846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV  898 (1153)
T ss_pred             cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence            5788999999999999999999999999999985 677787777666666554

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.84  E-value=7.1e-20  Score=179.14  Aligned_cols=214  Identities=27%  Similarity=0.383  Sum_probs=135.5

Q ss_pred             eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEecccccccccCccccCCCCCCEEEeccCcccc
Q 039599           49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLK  128 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~  128 (293)
                      |+.|++++|..+..+|..+.+.+|+.|++++|..+..+|....+|++|++++|.+..+|..+ .+++|++|.+.++....
T Consensus       683 L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~  761 (1153)
T PLN03210        683 LEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK  761 (1153)
T ss_pred             CCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhh
Confidence            45555555544444554444445555555555545555544445555666655555555433 34555555554432110


Q ss_pred             -------ccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCccccc
Q 039599          129 -------RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSD  201 (293)
Q Consensus       129 -------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  201 (293)
                             ..+......++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|..+..
T Consensus       762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence                   001111224577888888877777778788888888888888775445666554 677888888888733222


Q ss_pred             cccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCc-cCCcCCcccCCCCCCcEEeccCCc
Q 039599          202 NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNC-ALTSIPQEIGYLSSLEWLHLRGNN  275 (293)
Q Consensus       202 ~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n-~i~~l~~~~~~~~~L~~L~l~~n~  275 (293)
                      ......+++.|++++|.+..+|.           .+..+++|+.|++++| .++.+|..+..+++|+.+++++|.
T Consensus       841 ~p~~~~nL~~L~Ls~n~i~~iP~-----------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        841 FPDISTNISDLNLSRTGIEEVPW-----------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccccccccCEeECCCCCCccChH-----------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            22234577888888888877765           3567889999999987 677788888889999999999983

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.83  E-value=3.4e-23  Score=171.29  Aligned_cols=239  Identities=24%  Similarity=0.316  Sum_probs=175.6

Q ss_pred             eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCC---CccEEecccccccccCccccCCCCCCEEEeccCc
Q 039599           49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISG---NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCT  125 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  125 (293)
                      +..+.+++|......++.....-+.++++.+|. ..+.|+.+.   .++.+++++|++.++|+.++.+.++..++.+.|.
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~  125 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE  125 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence            666667766654444444444577788888887 556665554   5666688888888888888888888888888776


Q ss_pred             cccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccc
Q 039599          126 RLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNI  203 (293)
Q Consensus       126 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~  203 (293)
                      .. ..+++++.+-.++.++..+|++. .+|+.+..+.++..+++.+|.+. ..|+....|+.|+.++...|  +.+|..+
T Consensus       126 ~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~l  202 (565)
T KOG0472|consen  126 LK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLPPEL  202 (565)
T ss_pred             ee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCChhh
Confidence            44 46666777778888887777443 56677777778888888888874 44444445788888877777  7788888


Q ss_pred             cCccccceecccCCCccCCCCcC--CCCccCccc----------ccCCccccceeecCCccCCcCCcccCCCCCCcEEec
Q 039599          204 GNFKSFEYMGAHGSAISQLPSLS--SGLVPLSAS----------LLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL  271 (293)
Q Consensus       204 ~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~~----------~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l  271 (293)
                      +.+.+|+.+++.+|++..+|.+.  +.++.+++.          ..+.++++..||+++|+++++|+.++-+.+|++||+
T Consensus       203 g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl  282 (565)
T KOG0472|consen  203 GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL  282 (565)
T ss_pred             cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc
Confidence            88888888888888887777644  334444432          255778889999999999999999999999999999


Q ss_pred             cCCcCCCCchhHhhcccCCCC
Q 039599          272 RGNNLEGLPASIKQISRLESL  292 (293)
Q Consensus       272 ~~n~l~~~p~~l~~l~~L~~l  292 (293)
                      |+|.++++|..++.+ .|++|
T Consensus       283 SNN~is~Lp~sLgnl-hL~~L  302 (565)
T KOG0472|consen  283 SNNDISSLPYSLGNL-HLKFL  302 (565)
T ss_pred             cCCccccCCcccccc-eeeeh
Confidence            999999999888887 66654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.5e-19  Score=166.40  Aligned_cols=251  Identities=20%  Similarity=0.213  Sum_probs=171.5

Q ss_pred             eecCcccceeechhhccCCccccEEEEeccceeeeccc--ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccC
Q 039599           10 LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSI--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFP   87 (293)
Q Consensus        10 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~   87 (293)
                      +|++.+....++. .+.  ++|+.|++.+|.+...+..  .|++|++++|.+. .+|..  ..+|+.|++++|. +..+|
T Consensus       206 LdLs~~~LtsLP~-~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L~~Lp  278 (788)
T PRK15387        206 LNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-LTHLP  278 (788)
T ss_pred             EEcCCCCCCcCCc-chh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccC-cccCc--ccccceeeccCCc-hhhhh
Confidence            4888887776665 443  3789999999888754433  3999999998754 45643  2488899998887 66777


Q ss_pred             CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCce
Q 039599           88 HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQI  167 (293)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  167 (293)
                      ..+.+|+.|++++|++..+|..   .++|++|++++|.+.. +|..   ...|+.|++++|.+. .+|..   ..+|++|
T Consensus       279 ~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~L  347 (788)
T PRK15387        279 ALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQEL  347 (788)
T ss_pred             hchhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceE
Confidence            7777888899999988888763   4678899998887654 3432   234667777777554 34431   2367788


Q ss_pred             ecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccc--cC----C
Q 039599          168 NLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL--LS----G  239 (293)
Q Consensus       168 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~--~~----~  239 (293)
                      ++++|.+++ +|..   ..+|+.|++++|  ..+|..   ..+|+.|++++|.+..+|.....++.|+++.  +.    .
T Consensus       348 dLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l  420 (788)
T PRK15387        348 SVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML  420 (788)
T ss_pred             ecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcc
Confidence            888887753 4432   245666666666  334432   2356677777777766655444555555432  11    1


Q ss_pred             ccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHhh
Q 039599          240 LSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQ  285 (293)
Q Consensus       240 ~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~  285 (293)
                      +.+|+.|++++|.|+.+|..+..+++|+.|++++|++++ .|..+..
T Consensus       421 ~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        421 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            246788999999999999989999999999999999997 5555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.82  E-value=9.1e-23  Score=168.74  Aligned_cols=101  Identities=23%  Similarity=0.353  Sum_probs=78.2

Q ss_pred             cCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcC-------------CCCccCcccccCCcc
Q 039599          177 QRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLS-------------SGLVPLSASLLSGLS  241 (293)
Q Consensus       177 ~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~-------------~~l~~l~~~~~~~~~  241 (293)
                      .+|..++.+++|..|+++.|  ..+|..++.+-.|+.++++.|++...|...             ..+...+.+.+.++.
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~  505 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR  505 (565)
T ss_pred             cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence            34445566778888888888  778888888888888888888887776522             234444444477888


Q ss_pred             ccceeecCCccCCcCCcccCCCCCCcEEeccCCcCC
Q 039599          242 LLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       242 ~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~  277 (293)
                      +|..||+.+|.+..+|..+++|.+|+.|++++|+|+
T Consensus       506 nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  506 NLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            888999999888888888899999999999999888

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.77  E-value=5.4e-18  Score=156.28  Aligned_cols=239  Identities=22%  Similarity=0.186  Sum_probs=177.6

Q ss_pred             cccEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEeccccccccc
Q 039599           30 NLRVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEV  106 (293)
Q Consensus        30 ~L~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l  106 (293)
                      +-..|+++++.+...+ .+  .++.|++.+|.+. .+|..  .++|++|++++|. ++.+|..+.+|++|++++|.+..+
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt-~LP~l--p~~Lk~LdLs~N~-LtsLP~lp~sL~~L~Ls~N~L~~L  277 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPAL--PPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHL  277 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCC-CCCCC--CCCCcEEEecCCc-cCcccCcccccceeeccCCchhhh
Confidence            4567888888776333 22  3888999988754 45643  3589999999987 667887778999999999998887


Q ss_pred             CccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccc
Q 039599          107 PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVK  186 (293)
Q Consensus       107 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  186 (293)
                      |...   .+|+.|++++|.+.. +|.   ..++|+.|++++|.+.+ +|..   ..+|+.|++++|.+++ +|..   ..
T Consensus       278 p~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~  342 (788)
T PRK15387        278 PALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PS  342 (788)
T ss_pred             hhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---cc
Confidence            7633   568889999987653 453   34689999999996654 4432   2357889999999853 5542   25


Q ss_pred             cCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccc--cC----CccccceeecCCccCCcCCc
Q 039599          187 GLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL--LS----GLSLLYWLHLNNCALTSIPQ  258 (293)
Q Consensus       187 ~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~--~~----~~~~L~~L~l~~n~i~~l~~  258 (293)
                      +|+.|++++|  ..+|..   ..+|+.|++++|.+..+|.+..+|+.|+++.  +.    ..++|+.|++++|.++.+|.
T Consensus       343 ~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~  419 (788)
T PRK15387        343 GLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM  419 (788)
T ss_pred             ccceEecCCCccCCCCCC---CcccceehhhccccccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCc
Confidence            7999999998  555543   3468889999999998887666777777643  22    22478899999999988885


Q ss_pred             ccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599          259 EIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       259 ~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      .   ..+|+.|++++|+++.+|..+..+++|+.+|
T Consensus       420 l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        420 L---PSGLLSLSVYRNQLTRLPESLIHLSSETTVN  451 (788)
T ss_pred             c---hhhhhhhhhccCcccccChHHhhccCCCeEE
Confidence            3   3578889999999999999999888887654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=3.2e-18  Score=158.40  Aligned_cols=237  Identities=16%  Similarity=0.232  Sum_probs=139.5

Q ss_pred             eecCcccceeechhhccCCccccEEEEeccceeeecc-c--ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCccc
Q 039599           10 LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMS-I--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDF   86 (293)
Q Consensus        10 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   86 (293)
                      ++++++....++. .+.  ++++.|++++|.+...+. +  .|+.|++++|.+. .+|..+. .+|+.|++++|. +..+
T Consensus       183 L~L~~~~LtsLP~-~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~-~~L~~L~Ls~N~-L~~L  256 (754)
T PRK15370        183 LRLKILGLTTIPA-CIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP-DTIQEMELSINR-ITEL  256 (754)
T ss_pred             EEeCCCCcCcCCc-ccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh-ccccEEECcCCc-cCcC
Confidence            3555554444442 221  357777777776653221 1  2677777776543 4454321 267777777776 4455


Q ss_pred             CCCCC-CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCC
Q 039599           87 PHISG-NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLN  165 (293)
Q Consensus        87 ~~~~~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  165 (293)
                      |..+. +|+.|++++|++..+|..+.  ++|++|++++|.+.. +|..+.  .+|+.|++++|.+.. +|..+  .++|+
T Consensus       257 P~~l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~  328 (754)
T PRK15370        257 PERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLK  328 (754)
T ss_pred             ChhHhCCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccce
Confidence            54433 57777777777776665443  467777777765443 443322  356677777765543 33322  24677


Q ss_pred             ceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCcccc
Q 039599          166 QINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLL  243 (293)
Q Consensus       166 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L  243 (293)
                      .|++++|.+++ +|..+  .++|+.|++++|  ..+|..+  .+.|+.|++++|.+..+|.-           +  ...|
T Consensus       329 ~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~-----------l--~~sL  390 (754)
T PRK15370        329 TLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPEN-----------L--PAAL  390 (754)
T ss_pred             eccccCCcccc-CChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHh-----------H--HHHH
Confidence            77777777643 44433  256777777776  3444433  24677777777777766540           1  1357


Q ss_pred             ceeecCCccCCcCCccc----CCCCCCcEEeccCCcCCC
Q 039599          244 YWLHLNNCALTSIPQEI----GYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       244 ~~L~l~~n~i~~l~~~~----~~~~~L~~L~l~~n~l~~  278 (293)
                      +.|++++|+++.+|..+    ...+.+..+++.+|+++.
T Consensus       391 ~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        391 QIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            77888888887766543    345777888888888773

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.73  E-value=4.3e-19  Score=160.47  Aligned_cols=210  Identities=19%  Similarity=0.282  Sum_probs=151.3

Q ss_pred             eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCCC---CCccEEecccccccccCccccCCCCCCEEEeccC
Q 039599           49 EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRC  124 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~  124 (293)
                      +++++++.+.+ ..+|++++ +.+|+.++..+|.+ ..+|..+   .+|++|....|.+..+|+...++.+|++|++..|
T Consensus       243 l~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  243 LQYLDISHNNL-SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             ceeeecchhhh-hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence            77777777763 34566654 44888888887773 5555332   3566667777777777776677777888887776


Q ss_pred             cccccccccc--------------------------ccccccceecccccccCCCCChhhhccccCCceecCCCcccccC
Q 039599          125 TRLKRVSTSI--------------------------CKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQR  178 (293)
Q Consensus       125 ~~~~~~~~~l--------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  178 (293)
                      ++.. +|+.+                          ..++.|+.|.+.+|.+....-+.+..+++|+.|.+++|.+. .+
T Consensus       321 ~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~f  398 (1081)
T KOG0618|consen  321 NLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SF  398 (1081)
T ss_pred             cccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cC
Confidence            5432 22210                          12345677777787777776677788888888888888884 45


Q ss_pred             CC-cccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc
Q 039599          179 PS-SFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS  255 (293)
Q Consensus       179 ~~-~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~  255 (293)
                      |+ .+.++..|+.|+++||  ..+|..+..++.|++|...+|.+..+|.            +..++.|+.+|++.|+++.
T Consensus       399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe------------~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPE------------LAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechh------------hhhcCcceEEecccchhhh
Confidence            54 4677888888888888  7888888888888888888888888887            5688889999999999887


Q ss_pred             --CCcccCCCCCCcEEeccCCc
Q 039599          256 --IPQEIGYLSSLEWLHLRGNN  275 (293)
Q Consensus       256 --l~~~~~~~~~L~~L~l~~n~  275 (293)
                        +|.... .++|++||+++|.
T Consensus       467 ~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  467 VTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhhCC-CcccceeeccCCc
Confidence              443332 3899999999996

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=4e-17  Score=151.17  Aligned_cols=225  Identities=23%  Similarity=0.311  Sum_probs=170.5

Q ss_pred             cccEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCC-CCccEEecccccccc
Q 039599           30 NLRVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEE  105 (293)
Q Consensus        30 ~L~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~  105 (293)
                      +...|+++++.+...+ .+  .++.|++++|.+. .+|..+. .+|++|++++|. ++.+|..+ ..|+.|++++|.+..
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~-~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N~L~~  255 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ-GNIKTLYANSNQ-LTSIPATLPDTIQEMELSINRITE  255 (754)
T ss_pred             CceEEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc-cCCCEEECCCCc-cccCChhhhccccEEECcCCccCc
Confidence            4677888887766333 23  3899999998754 5676543 589999999998 56777654 479999999999999


Q ss_pred             cCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCccccc
Q 039599          106 VPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENV  185 (293)
Q Consensus       106 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  185 (293)
                      +|..+.  .+|++|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|.++. +|..+  .
T Consensus       256 LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~  324 (754)
T PRK15370        256 LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--P  324 (754)
T ss_pred             CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--c
Confidence            987664  58999999988765 4666543  58999999999665 4554332  468999999999864 55433  3


Q ss_pred             ccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCC
Q 039599          186 KGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYL  263 (293)
Q Consensus       186 ~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~  263 (293)
                      ++|+.|++++|  ..+|..+.  ++|+.|++++|.+..+|..           +  .++|+.|++++|.++.+|..+.  
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~-----------l--p~~L~~LdLs~N~Lt~LP~~l~--  387 (754)
T PRK15370        325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPET-----------L--PPTITTLDVSRNALTNLPENLP--  387 (754)
T ss_pred             ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChh-----------h--cCCcCEEECCCCcCCCCCHhHH--
Confidence            68999999988  55665543  6899999999998877651           1  2578999999999999887653  


Q ss_pred             CCCcEEeccCCcCCCCchhHhh
Q 039599          264 SSLEWLHLRGNNLEGLPASIKQ  285 (293)
Q Consensus       264 ~~L~~L~l~~n~l~~~p~~l~~  285 (293)
                      +.|+.|++++|+++++|..+..
T Consensus       388 ~sL~~LdLs~N~L~~LP~sl~~  409 (754)
T PRK15370        388 AALQIMQASRNNLVRLPESLPH  409 (754)
T ss_pred             HHHHHHhhccCCcccCchhHHH
Confidence            4799999999999988876544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.68  E-value=3.3e-18  Score=154.83  Aligned_cols=252  Identities=22%  Similarity=0.275  Sum_probs=159.9

Q ss_pred             ccCCccccEEEEeccceeee--cccceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEecc
Q 039599           25 FSNMSNLRVLKFYIPEISVH--MSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLD   99 (293)
Q Consensus        25 ~~~~~~L~~L~l~~~~~~~~--~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~   99 (293)
                      +.++.+|+.+....|.+...  ....++.|+...|+.... -..+.-.+|++++++++. ...+|.+   ..+++.++..
T Consensus       195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~-~~~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL-DVHPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNAN  272 (1081)
T ss_pred             hhhccchhhhhhhhcccceEEecCcchheeeeccCcceee-ccccccccceeeecchhh-hhcchHHHHhcccceEeccc
Confidence            44444444444444433311  112255666666654411 111111266677776666 4445533   2356666666


Q ss_pred             cccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhh---------------------
Q 039599          100 ETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESL---------------------  158 (293)
Q Consensus       100 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---------------------  158 (293)
                      .|.+..+|..+....+|++|.+..|.. ..+|+....++.|++|++..|.+.. +|+.+                     
T Consensus       273 ~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  273 HNRLVALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTL  350 (1081)
T ss_pred             chhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhcccccc
Confidence            666766666666666777776666553 3355556667777788877775532 11110                     


Q ss_pred             -----hccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCCccCCCCcCCCCc
Q 039599          159 -----EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQLPSLSSGLV  230 (293)
Q Consensus       159 -----~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~~l~  230 (293)
                           ..++.|+.|++.+|.+++..-+.+...++|+.|+++.|  +.+|+ .+.++..|++|+++||++..+|.      
T Consensus       351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~------  424 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD------  424 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH------
Confidence                 12345677777777777766667777788888888888  66665 45677888888888888887765      


Q ss_pred             cCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC--CchhHhhcccCCCCC
Q 039599          231 PLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG--LPASIKQISRLESLD  293 (293)
Q Consensus       231 ~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~--~p~~l~~l~~L~~ld  293 (293)
                           .+..++.|++|..-+|++..+| .+..++.|+.+|++.|+++.  +|.... -++|++||
T Consensus       425 -----tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLd  482 (1081)
T KOG0618|consen  425 -----TVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLD  482 (1081)
T ss_pred             -----HHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccccceee
Confidence                 3557788899998888888888 68889999999999999985  443332 27788776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=3.2e-18  Score=126.63  Aligned_cols=157  Identities=25%  Similarity=0.399  Sum_probs=89.9

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      +++.|.+++|+++.+|+.++.+.+|+.|++.+|++ ..+|..++++++|+.|+++-|. ...+|..|+.++.|+.||+.+
T Consensus        34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccc
Confidence            56666777777777777777777777777776653 3456666666666666666553 235566666666666666666


Q ss_pred             Ccccc-cCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeec
Q 039599          172 TTITE-QRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL  248 (293)
Q Consensus       172 n~~~~-~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l  248 (293)
                      |.+.+ .+|..|.-++.|+.|.+++|  +.+|..++++++|+.+.+..|.+.++|.           -++.+..|++|++
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk-----------eig~lt~lrelhi  180 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK-----------EIGDLTRLRELHI  180 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH-----------HHHHHHHHHHHhc
Confidence            65543 33444545555555555555  4455555555555555555555444443           1334444555555


Q ss_pred             CCccCCcCCcccC
Q 039599          249 NNCALTSIPQEIG  261 (293)
Q Consensus       249 ~~n~i~~l~~~~~  261 (293)
                      .+|+++.+|..++
T Consensus       181 qgnrl~vlppel~  193 (264)
T KOG0617|consen  181 QGNRLTVLPPELA  193 (264)
T ss_pred             ccceeeecChhhh
Confidence            5555555544443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=9.1e-18  Score=124.25  Aligned_cols=160  Identities=22%  Similarity=0.343  Sum_probs=140.2

Q ss_pred             cCCCCCCCcCceEEeecCCcCCcccCCCCC---CccEEecccccccccCccccCCCCCCEEEeccCcccccccccccccc
Q 039599           62 SFPSNLHFVSPVTIDFTSCINLTDFPHISG---NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLK  138 (293)
Q Consensus        62 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  138 (293)
                      .+|..+.+.+++.|.+++|+ ++.+|+.+.   +|+.|++.+|+++++|..++.+++|+.|++..|. ....|..++.++
T Consensus        25 ~~~gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p  102 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFP  102 (264)
T ss_pred             hcccccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCc
Confidence            34556666688899999999 777777665   6777799999999999999999999999999875 456899999999


Q ss_pred             ccceecccccccCC-CCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceeccc
Q 039599          139 SLIALSAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAH  215 (293)
Q Consensus       139 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~  215 (293)
                      .|+.|++.+|.+.+ .+|..|-.++.|+.|+++.|.+ +.+|..++++++||.|.+.+|  -.+|..++.+..|+++++.
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence            99999999987774 6788888899999999999999 789999999999999999998  6789999999999999999


Q ss_pred             CCCccCCCC
Q 039599          216 GSAISQLPS  224 (293)
Q Consensus       216 ~~~~~~~~~  224 (293)
                      +|+++-+|.
T Consensus       182 gnrl~vlpp  190 (264)
T KOG0617|consen  182 GNRLTVLPP  190 (264)
T ss_pred             cceeeecCh
Confidence            999998843

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.63  E-value=1.3e-17  Score=142.42  Aligned_cols=235  Identities=19%  Similarity=0.210  Sum_probs=133.7

Q ss_pred             hhccCCccccEEEEeccceeeecccceEEEeccCCcccccCCCCC-CCcCceEEeecCCcCCc------ccCCC---CCC
Q 039599           23 RAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL-HFVSPVTIDFTSCINLT------DFPHI---SGN   92 (293)
Q Consensus        23 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~------~~~~~---~~~   92 (293)
                      ..|..+.+|++++++++.+....              ...++..+ ..++++.++++++....      .++..   ..+
T Consensus        17 ~~~~~l~~L~~l~l~~~~l~~~~--------------~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116          17 ELLPKLLCLQVLRLEGNTLGEEA--------------AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             HHHHHHhhccEEeecCCCCcHHH--------------HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            35566677888888877653210              00111111 12245555555554321      01111   236


Q ss_pred             ccEEeccccccc-ccCccccCCC---CCCEEEeccCccccc----cccccccc-cccceecccccccCC----CCChhhh
Q 039599           93 ITRLYLDETAIE-EVPSSIKCLT---NLKLLRINRCTRLKR----VSTSICKL-KSLIALSAYGCLNLE----RFPESLE  159 (293)
Q Consensus        93 L~~L~l~~~~~~-~l~~~~~~l~---~L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~~~----~~~~~~~  159 (293)
                      |++|++++|.+. ..+..+..+.   +|++|++++|.....    +...+..+ ++|++|++++|.+.+    .++..+.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            666666666664 2222333333   377777777665421    12234445 677777777776653    2333455


Q ss_pred             ccccCCceecCCCccccc----CCCcccccccCceecCCCC-------ccccccccCccccceecccCCCccCC-C-CcC
Q 039599          160 KMEHLNQINLGRTTITEQ----RPSSFENVKGLETLGFSEL-------DNLSDNIGNFKSFEYMGAHGSAISQL-P-SLS  226 (293)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~-------~~l~~~~~~l~~L~~L~l~~~~~~~~-~-~l~  226 (293)
                      .+++|++|++++|.+.+.    ++..+...++|+.|++++|       ..+...+..+++|++|++++|.+.+. . .+.
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~  242 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA  242 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence            666777788777777532    1222334457778887776       12344566778888888888877653 1 111


Q ss_pred             CCCccCcccccCCccccceeecCCccCCc-----CCcccCCCCCCcEEeccCCcCCC
Q 039599          227 SGLVPLSASLLSGLSLLYWLHLNNCALTS-----IPQEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       227 ~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~~~~L~~L~l~~n~l~~  278 (293)
                      ..       .....+.|++|++++|.+++     +...+..+++|+.+++++|++++
T Consensus       243 ~~-------~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         243 SA-------LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HH-------HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            00       01124678899999988873     34455667889999999998884

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.58  E-value=1.3e-16  Score=132.31  Aligned_cols=136  Identities=18%  Similarity=0.312  Sum_probs=99.2

Q ss_pred             CcccCCCCC-CccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC-hhhh
Q 039599           83 LTDFPHISG-NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLE  159 (293)
Q Consensus        83 ~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~  159 (293)
                      ++++|..++ ...+++|..|+|..+|+ +|+.+++|+.|+++.|++....|..+..++++..|-+.++..+..+| ..|.
T Consensus        58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   58 LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            566776654 67788888888888887 77888888888888888887778888888888888777743444444 5677


Q ss_pred             ccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCC
Q 039599          160 KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSA  218 (293)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~  218 (293)
                      .+..++.|.+.-|.+.....+.|..++++..|.+.+|  +.++. .+..+.+++++++..|.
T Consensus       138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            8888888888877776655566777777777777777  44444 45566666666666555

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.55  E-value=3.7e-16  Score=133.37  Aligned_cols=215  Identities=16%  Similarity=0.155  Sum_probs=150.7

Q ss_pred             CceEEeecCCcCCcc----cCC---CCCCccEEecccccccc-------cCccccCCCCCCEEEeccCcccccccccccc
Q 039599           71 SPVTIDFTSCINLTD----FPH---ISGNITRLYLDETAIEE-------VPSSIKCLTNLKLLRINRCTRLKRVSTSICK  136 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~----~~~---~~~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  136 (293)
                      +|+.+++++|.+...    ++.   ....+++++++++.+..       ++..+..+++|++|++++|......+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            699999999985332    222   23468999998887653       2345677889999999999876555555555


Q ss_pred             ccc---cceecccccccCC----CCChhhhcc-ccCCceecCCCccccc----CCCcccccccCceecCCCC--c-----
Q 039599          137 LKS---LIALSAYGCLNLE----RFPESLEKM-EHLNQINLGRTTITEQ----RPSSFENVKGLETLGFSEL--D-----  197 (293)
Q Consensus       137 l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~--~-----  197 (293)
                      +.+   |++|++++|.+..    .+...+..+ ++|++|++++|.+++.    ++..+..+++|+.|++++|  .     
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            555   9999999997663    233445666 8999999999998742    2334556778999999998  1     


Q ss_pred             cccccccCccccceecccCCCccCC-CC-cCCCCccCcccccCCccccceeecCCccCCc-CCccc-----CCCCCCcEE
Q 039599          198 NLSDNIGNFKSFEYMGAHGSAISQL-PS-LSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEI-----GYLSSLEWL  269 (293)
Q Consensus       198 ~l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~-----~~~~~L~~L  269 (293)
                      .++..+...+.|++|++++|.+.+. .. +..        .+..+++|++|++++|.+++ ....+     ...+.|+.|
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L  255 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAE--------TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL  255 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccChHHHHHHHH--------HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence            2333455667999999999988754 11 111        24567899999999999886 11112     124899999


Q ss_pred             eccCCcCCC-----CchhHhhcccCCCCC
Q 039599          270 HLRGNNLEG-----LPASIKQISRLESLD  293 (293)
Q Consensus       270 ~l~~n~l~~-----~p~~l~~l~~L~~ld  293 (293)
                      ++++|.+++     ++..+..+++|+.+|
T Consensus       256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~  284 (319)
T cd00116         256 SLSCNDITDDGAKDLAEVLAEKESLLELD  284 (319)
T ss_pred             EccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence            999999973     344455556666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.51  E-value=1.8e-16  Score=131.45  Aligned_cols=242  Identities=19%  Similarity=0.206  Sum_probs=130.6

Q ss_pred             EEeecCcccceeechhhccCCccccEEEEeccceeeecccceEEEeccCCcccccCCCCC-CCcCceEEeecCCcCCccc
Q 039599            8 IFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL-HFVSPVTIDFTSCINLTDF   86 (293)
Q Consensus         8 i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~   86 (293)
                      +.+++..|++..+++++|+.+++||.|++++|.+.                  ..-|..| +...+..|-+.++..++++
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is------------------~I~p~AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS------------------FIAPDAFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchh------------------hcChHhhhhhHhhhHHHhhcCCchhhh
Confidence            34467777777777777777777777777776553                  2334333 2334444444443335555


Q ss_pred             CCCC----CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCC---------
Q 039599           87 PHIS----GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE---------  152 (293)
Q Consensus        87 ~~~~----~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---------  152 (293)
                      |...    ..++.|.+..|++..++. .+..++++..|.+.+|.+-...-..+..+..++.+++..|.+..         
T Consensus       132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~  211 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD  211 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence            5432    234455666666665544 55666666666666654333222345566666666666554221         


Q ss_pred             ---CCChhhhccccCCceecCCCcc-------------------------cccCCC-cccccccCceecCCCC---cccc
Q 039599          153 ---RFPESLEKMEHLNQINLGRTTI-------------------------TEQRPS-SFENVKGLETLGFSEL---DNLS  200 (293)
Q Consensus       153 ---~~~~~~~~l~~L~~L~l~~n~~-------------------------~~~~~~-~~~~~~~L~~L~l~~~---~~l~  200 (293)
                         ..+-.++..+...-..+.+..+                         ....|. .|..+++|++|++++|   ..-.
T Consensus       212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~  291 (498)
T KOG4237|consen  212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED  291 (498)
T ss_pred             HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence               1111112222222222222111                         112221 2445556666666655   2223


Q ss_pred             ccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCC
Q 039599          201 DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       201 ~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~  277 (293)
                      .+|.....+++|.++.|++..+..          ..|.++..|+.|++.+|+|+. -|.+|....+|..|++-.|.+.
T Consensus       292 ~aFe~~a~l~eL~L~~N~l~~v~~----------~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKLEFVSS----------GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhcchhhhhhhhcCcchHHHHHH----------HhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            345555556666666665555421          025677778888888888877 5667777788888888777665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=2.2e-14  Score=124.30  Aligned_cols=198  Identities=19%  Similarity=0.321  Sum_probs=162.6

Q ss_pred             EeecCCcCCcccCCCCC-----CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599           75 IDFTSCINLTDFPHISG-----NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL  149 (293)
Q Consensus        75 L~l~~~~~~~~~~~~~~-----~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  149 (293)
                      |.|++-. ++.+|..-.     .-...+++.|.+.++|..+..+..|+.+.+..|. ...+|..++++..|+.++++.|+
T Consensus        55 l~Ls~rr-lk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRR-LKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccch-hhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch
Confidence            3444433 556664432     4456699999999999998888999999998876 45678889999999999999986


Q ss_pred             cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCC
Q 039599          150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSS  227 (293)
Q Consensus       150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~  227 (293)
                      +. .+|..+..++ |+.|-+++|++ ..+|..++....|..|+.+.|  ..++..++.+.+|+.+.+..|.+..+|.   
T Consensus       133 lS-~lp~~lC~lp-Lkvli~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~---  206 (722)
T KOG0532|consen  133 LS-HLPDGLCDLP-LKVLIVSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE---  206 (722)
T ss_pred             hh-cCChhhhcCc-ceeEEEecCcc-ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH---
Confidence            54 6677777776 89999999999 578888888889999999999  7889999999999999999999999865   


Q ss_pred             CCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccC
Q 039599          228 GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRL  289 (293)
Q Consensus       228 ~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L  289 (293)
                              -+.. -.|..||+++|+|..+|..|..|+.|++|-|.+|.++.-|..++-.-++
T Consensus       207 --------El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkV  259 (722)
T KOG0532|consen  207 --------ELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKV  259 (722)
T ss_pred             --------HHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccce
Confidence                    1222 2478899999999999999999999999999999999988888765444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.25  E-value=1.5e-13  Score=112.63  Aligned_cols=135  Identities=16%  Similarity=0.203  Sum_probs=97.2

Q ss_pred             ccccccceecccccccCC----CCChhhhccccCCceecCCCcccccC----CCcccccccCceecCCCC-------ccc
Q 039599          135 CKLKSLIALSAYGCLNLE----RFPESLEKMEHLNQINLGRTTITEQR----PSSFENVKGLETLGFSEL-------DNL  199 (293)
Q Consensus       135 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~-------~~l  199 (293)
                      .+-+.|++++..+|....    .+...++..+.|+.+.++.|.+....    ...+..+++|+.|++.+|       ..+
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            345678888888876542    23455677788888888888773222    234678899999999888       345


Q ss_pred             cccccCccccceecccCCCccCCC--CcCCCCccCcccccCCccccceeecCCccCCc-----CCcccCCCCCCcEEecc
Q 039599          200 SDNIGNFKSFEYMGAHGSAISQLP--SLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-----IPQEIGYLSSLEWLHLR  272 (293)
Q Consensus       200 ~~~~~~l~~L~~L~l~~~~~~~~~--~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~~~~L~~L~l~  272 (293)
                      ...+..++.|+.++++.|.+..--  .+...+       -...|+|+.+.+.+|.|+.     +...+...+.|..|+|+
T Consensus       234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al-------~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn  306 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLENEGAIAFVDAL-------KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN  306 (382)
T ss_pred             HHHhcccchheeecccccccccccHHHHHHHH-------hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence            567778889999999999887651  122111       1246789999999999886     33345668999999999


Q ss_pred             CCcC
Q 039599          273 GNNL  276 (293)
Q Consensus       273 ~n~l  276 (293)
                      +|.+
T Consensus       307 gN~l  310 (382)
T KOG1909|consen  307 GNRL  310 (382)
T ss_pred             cccc
Confidence            9999

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.23  E-value=3.2e-12  Score=103.13  Aligned_cols=195  Identities=21%  Similarity=0.214  Sum_probs=123.7

Q ss_pred             cCceEEeecCCcCCcccC---CCCCCccEEecccccccccCccccCCCCCCEEEecc-Cccccccccccccccccceecc
Q 039599           70 VSPVTIDFTSCINLTDFP---HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINR-CTRLKRVSTSICKLKSLIALSA  145 (293)
Q Consensus        70 ~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l  145 (293)
                      .+|.++.+++|. ...+.   ..-+.|+.+.+.+..+...|.-+ -...+....... ....+.....+...+.|+++++
T Consensus       214 ~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~-pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL  291 (490)
T KOG1259|consen  214 RNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQDVPSLL-PETILADPSGSEPSTSNGSALVSADTWQELTELDL  291 (490)
T ss_pred             hhhheeeeeccc-hhheeceeecCchhheeeeeccccccccccc-chhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence            377777787776 33222   22345666665555443222111 001111111110 0011111223334567888888


Q ss_pred             cccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCC
Q 039599          146 YGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLP  223 (293)
Q Consensus       146 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~  223 (293)
                      ++| .+..+.+...-.++++.|+++.|.+...  ..+..+++|+.|++++|  ..+..+-.++.++++|.+++|.+.++.
T Consensus       292 S~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS  368 (490)
T KOG1259|consen  292 SGN-LITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS  368 (490)
T ss_pred             ccc-chhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh
Confidence            887 4456677777778888888888888533  34777888888888888  555556667888889999988887764


Q ss_pred             CcCCCCccCcccccCCccccceeecCCccCCcC--CcccCCCCCCcEEeccCCcCCCCch
Q 039599          224 SLSSGLVPLSASLLSGLSLLYWLHLNNCALTSI--PQEIGYLSSLEWLHLRGNNLEGLPA  281 (293)
Q Consensus       224 ~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l--~~~~~~~~~L~~L~l~~n~l~~~p~  281 (293)
                      .            ++.+-+|..||+++|+|..+  -..++.+|.|+.+.+.+|.+..+|+
T Consensus       369 G------------L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  369 G------------LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             h------------hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            3            45667788899999988763  2357888999999999998887664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=1e-12  Score=114.12  Aligned_cols=181  Identities=24%  Similarity=0.376  Sum_probs=151.1

Q ss_pred             EecccccccccCccc--cCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCc
Q 039599           96 LYLDETAIEEVPSSI--KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT  173 (293)
Q Consensus        96 L~l~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~  173 (293)
                      |.|++..+...|..-  ..+..-...+++.|.. ..+|..++.+..|+.+.++.| ....+|+.+..+..|..++++.|.
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF-SELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhcccccc-ccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch
Confidence            455666666666422  3445556788888764 568888889999999999997 556889999999999999999999


Q ss_pred             ccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCc
Q 039599          174 ITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNC  251 (293)
Q Consensus       174 ~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n  251 (293)
                      + ..+|..++.++ |+.|-++.|  ..+|+.++....|..++.+.|.+..+|.           -++++.+|+.|.++.|
T Consensus       133 l-S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-----------ql~~l~slr~l~vrRn  199 (722)
T KOG0532|consen  133 L-SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-----------QLGYLTSLRDLNVRRN  199 (722)
T ss_pred             h-hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-----------HhhhHHHHHHHHHhhh
Confidence            9 56787787777 899988888  7889999989999999999999999955           2568889999999999


Q ss_pred             cCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCC
Q 039599          252 ALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL  292 (293)
Q Consensus       252 ~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~l  292 (293)
                      ++.++|..+..++ |..||+|.|++..+|..|..|..|++|
T Consensus       200 ~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l  239 (722)
T KOG0532|consen  200 HLEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVL  239 (722)
T ss_pred             hhhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheee
Confidence            9999999888665 899999999999999999999999876

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=3.4e-11  Score=105.86  Aligned_cols=192  Identities=26%  Similarity=0.357  Sum_probs=137.5

Q ss_pred             EEeecCCcCCcccCCC--CCCccEEecccccccccCccccCCC-CCCEEEeccCccccccccccccccccceeccccccc
Q 039599           74 TIDFTSCINLTDFPHI--SGNITRLYLDETAIEEVPSSIKCLT-NLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN  150 (293)
Q Consensus        74 ~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  150 (293)
                      .++...+.........  ...++.|++.++.+..+++...... +|+.|++++|.+.. ++..+..+++|+.|+++.|.+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhhccccccccccCCchh
Confidence            3556655532332222  2357888888888888888776664 88888888876543 444567888888888888855


Q ss_pred             CCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCC
Q 039599          151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSG  228 (293)
Q Consensus       151 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~  228 (293)
                      . .++......+.|+.|++++|.+. .+|........|+++.++.|  ...+..+.+++.+..+.+.+|++...+.    
T Consensus       176 ~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~----  249 (394)
T COG4886         176 S-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE----  249 (394)
T ss_pred             h-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc----
Confidence            4 44444557778888888888884 45554445566888888887  4566677788888888888887766433    


Q ss_pred             CccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCc
Q 039599          229 LVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLP  280 (293)
Q Consensus       229 l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p  280 (293)
                             .++.+++++.|++++|.+++++. ++...+++.|++++|.+..++
T Consensus       250 -------~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         250 -------SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             -------hhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence                   24577778999999998888776 788889999999998887643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=3.7e-11  Score=92.07  Aligned_cols=107  Identities=23%  Similarity=0.302  Sum_probs=26.5

Q ss_pred             cccccceecccccccCCCCChhhh-ccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccc-cCccccce
Q 039599          136 KLKSLIALSAYGCLNLERFPESLE-KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNI-GNFKSFEY  211 (293)
Q Consensus       136 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~-~~l~~L~~  211 (293)
                      +..++++|++.+|.+.. + +.++ .+.+|+.|++++|.++..  +.+..+++|++|++++|  ..+.+.+ ..+++|++
T Consensus        17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            44456666666664432 2 2233 355666666666666432  23445556666666555  3332222 23455555


Q ss_pred             ecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc
Q 039599          212 MGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS  255 (293)
Q Consensus       212 L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~  255 (293)
                      |++++|.+..+..+.         .++.+++|+.|++.+|+++.
T Consensus        93 L~L~~N~I~~l~~l~---------~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   93 LYLSNNKISDLNELE---------PLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             EE-TTS---SCCCCG---------GGGG-TT--EEE-TT-GGGG
T ss_pred             EECcCCcCCChHHhH---------HHHcCCCcceeeccCCcccc
Confidence            555555554442210         13344555555555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.9e-11  Score=102.07  Aligned_cols=201  Identities=16%  Similarity=0.183  Sum_probs=115.7

Q ss_pred             CceEEeecCCcCCcc----cCCCCCCccEEeccccccccc---CccccCCCCCCEEEeccCcccccccc-ccccccccce
Q 039599           71 SPVTIDFTSCINLTD----FPHISGNITRLYLDETAIEEV---PSSIKCLTNLKLLRINRCTRLKRVST-SICKLKSLIA  142 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~----~~~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~  142 (293)
                      +|+++.+.++.....    ....+.+++.|||++|-+..+   ..-...+|+|+.|+++.|...-.... .-..++.++.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            677777776662211    123355777777777765433   23346677777777777654322111 1124667777


Q ss_pred             ecccccccCC-CCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc--ccccCccccceecccCC
Q 039599          143 LSAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS--DNIGNFKSFEYMGAHGS  217 (293)
Q Consensus       143 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~--~~~~~l~~L~~L~l~~~  217 (293)
                      |.++.|.+.. .+......+|+|+.|++.+|............+..|+.|++++|  ..++  ...+.++.|+.++++.+
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            7777776663 22333456677777777777422222223344566777777777  2222  34556777777777777


Q ss_pred             CccCC--CCcCCCCccCcccccCCccccceeecCCccCCcCC--cccCCCCCCcEEeccCCcCC
Q 039599          218 AISQL--PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP--QEIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       218 ~~~~~--~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~l~  277 (293)
                      .+.++  |..    ..++.  ....++|++|++..|+|.+.+  ..+..+++|+.|.+..|++.
T Consensus       282 gi~si~~~d~----~s~~k--t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  282 GIASIAEPDV----ESLDK--THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             CcchhcCCCc----cchhh--hcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            77666  221    11110  224567777777777776543  23555667777777777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=1.5e-10  Score=101.87  Aligned_cols=184  Identities=27%  Similarity=0.361  Sum_probs=139.9

Q ss_pred             EEecccccccccCccccCCCCCCEEEeccCcccccccccccccc-ccceecccccccCCCCChhhhccccCCceecCCCc
Q 039599           95 RLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLK-SLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT  173 (293)
Q Consensus        95 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~  173 (293)
                      .+.+..+.+..-...+...+.++.|++.++.+.. ++....... +|+.|++++|.+. .++..+..++.|+.|+++.|.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            4677777764444445566788999999877554 555555664 8999999998554 455678889999999999999


Q ss_pred             ccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCc
Q 039599          174 ITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNC  251 (293)
Q Consensus       174 ~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n  251 (293)
                      +. .++...+..++|+.|+++++  ..++........|+++.+++|.....+.           .++.+.++..+.+.+|
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~-----------~~~~~~~l~~l~l~~n  242 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS-----------SLSNLKNLSGLELSNN  242 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch-----------hhhhcccccccccCCc
Confidence            95 45555557889999999998  6677666667779999999996444422           2456777888888999


Q ss_pred             cCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599          252 ALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       252 ~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      .+..++..++.+++++.|++++|.++.++. +..+.+++.+|
T Consensus       243 ~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~  283 (394)
T COG4886         243 KLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELD  283 (394)
T ss_pred             eeeeccchhccccccceecccccccccccc-ccccCccCEEe
Confidence            888878888999999999999999999876 66667776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=3.5e-11  Score=101.55  Aligned_cols=180  Identities=17%  Similarity=0.166  Sum_probs=108.1

Q ss_pred             CCCccEEecccccccccC--ccccCCCCCCEEEeccCccccccc--cccccccccceecccccccCCCCChh-hhccccC
Q 039599           90 SGNITRLYLDETAIEEVP--SSIKCLTNLKLLRINRCTRLKRVS--TSICKLKSLIALSAYGCLNLERFPES-LEKMEHL  164 (293)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L  164 (293)
                      +.+|++..|.++.++..+  .....|++++.||++.|-+....+  .....+++|+.|+++.|.+.--.... -..++.|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            345666677777665444  245667777888887764433222  33346777888888777654221111 1245667


Q ss_pred             CceecCCCcccccCCC-cccccccCceecCCCC-ccc--cccccCccccceecccCCCccCCCCcCCCCccCcccccCCc
Q 039599          165 NQINLGRTTITEQRPS-SFENVKGLETLGFSEL-DNL--SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGL  240 (293)
Q Consensus       165 ~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~~-~~l--~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~  240 (293)
                      +.|.+++|+++..-.. ....+++|+.|.+.+| ..+  ......++.|++|++++|.+..++...         -.+.+
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~---------~~~~l  270 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY---------KVGTL  270 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc---------ccccc
Confidence            7777877777532211 1234677777777777 222  112334567777888877776664311         14566


Q ss_pred             cccceeecCCccCCc--CCcc-----cCCCCCCcEEeccCCcCCC
Q 039599          241 SLLYWLHLNNCALTS--IPQE-----IGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       241 ~~L~~L~l~~n~i~~--l~~~-----~~~~~~L~~L~l~~n~l~~  278 (293)
                      +.|..|+++.|.|.+  .|+.     ...+++|+.|+++.|++.+
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            777777777777776  4443     2357778888888887765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=3.1e-10  Score=87.04  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=41.5

Q ss_pred             cCceEEeecCCcCCc--ccCCCCCCccEEecccccccccCccccCCCCCCEEEeccCcccccccccc-ccccccceeccc
Q 039599           70 VSPVTIDFTSCINLT--DFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSI-CKLKSLIALSAY  146 (293)
Q Consensus        70 ~~L~~L~l~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~  146 (293)
                      .++++|++.+|.+..  .+...+.+++.|++++|.+..+. .+..+++|++|++++|.+.. +.+.+ ..+++|++|+++
T Consensus        19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred             cccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECc
Confidence            356777777776332  11223456777777777777665 36667778888888776654 32223 356777788877


Q ss_pred             ccccCCCC-ChhhhccccCCceecCCCcccccCC---CcccccccCceecC
Q 039599          147 GCLNLERF-PESLEKMEHLNQINLGRTTITEQRP---SSFENVKGLETLGF  193 (293)
Q Consensus       147 ~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l  193 (293)
                      +|.+...- -..++.+++|+.|++.+|+++..--   ..+..+|+|+.||-
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            77654311 1446677778888888887754311   12445667777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=3.7e-10  Score=91.41  Aligned_cols=196  Identities=13%  Similarity=0.080  Sum_probs=90.7

Q ss_pred             eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEeccccc--c--cccCccccCCCCCCEEEeccC
Q 039599           49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETA--I--EEVPSSIKCLTNLKLLRINRC  124 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~--~--~~l~~~~~~l~~L~~L~l~~~  124 (293)
                      +..+.++.|..-....-...-+.|+++.+.+.. ....|...+.-..-|..+..  .  +.+...+.-.+.|+.+|+++|
T Consensus       216 l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~-~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N  294 (490)
T KOG1259|consen  216 LKTLKFSALSTENIVDIELLKPTLQTICVHNTT-IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN  294 (490)
T ss_pred             hheeeeeccchhheeceeecCchhheeeeeccc-ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc
Confidence            666777776532211111223477777776554 33333222211111111111  0  011112223345555566655


Q ss_pred             ccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC-ccccccc
Q 039599          125 TRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNLSDNI  203 (293)
Q Consensus       125 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~  203 (293)
                      .+. .+.+++.-.|.++.|++++|.+.. + ..++.+++|+.||+++|.++.. ...=.++.++++|.+++| .+-.+.+
T Consensus       295 ~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~LSGL  370 (490)
T KOG1259|consen  295 LIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETLSGL  370 (490)
T ss_pred             chh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhhhhh
Confidence            432 234444445555666666554332 1 1245555666666666655322 111123455556666655 2222345


Q ss_pred             cCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc
Q 039599          204 GNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ  258 (293)
Q Consensus       204 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~  258 (293)
                      .++.+|..|++.+|++......         ..++.+|.|+.+.+.+|.+..+++
T Consensus       371 ~KLYSLvnLDl~~N~Ie~ldeV---------~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  371 RKLYSLVNLDLSSNQIEELDEV---------NHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             HhhhhheeccccccchhhHHHh---------cccccccHHHHHhhcCCCccccch
Confidence            5566666666666666554210         025566666777777766655443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=1.7e-09  Score=102.63  Aligned_cols=192  Identities=19%  Similarity=0.252  Sum_probs=117.6

Q ss_pred             ccccEEEEeccceeeec-c---cceEEEeccCCcc-cccCCC--CCCCcCceEEeecCCcCCcccCCCCC---CccEEec
Q 039599           29 SNLRVLKFYIPEISVHM-S---IEEQLLDSKGCKI-LRSFPS--NLHFVSPVTIDFTSCINLTDFPHISG---NITRLYL   98 (293)
Q Consensus        29 ~~L~~L~l~~~~~~~~~-~---~~l~~L~l~~~~~-~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l   98 (293)
                      ...+...+-++.+...+ +   ..++.|-+.++.. ...++.  ...++.|++||+++|.....+|..++   +|++|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            44555555555543111 1   1277777777652 344444  23466999999999888888887655   7888899


Q ss_pred             ccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccC--CCCChhhhccccCCceecCCCcccc
Q 039599           99 DETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL--ERFPESLEKMEHLNQINLGRTTITE  176 (293)
Q Consensus        99 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~  176 (293)
                      +++.+..+|..+.++..|.+|++..+......+.....+.+|++|.+..-...  ......+..+..|+.+.......  
T Consensus       603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--  680 (889)
T KOG4658|consen  603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--  680 (889)
T ss_pred             cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--
Confidence            99999999999999999999999887666555666666888998888664311  11223334444555554432221  


Q ss_pred             cCCCcccccccCc----eecCCCC--ccccccccCccccceecccCCCccCC
Q 039599          177 QRPSSFENVKGLE----TLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       177 ~~~~~~~~~~~L~----~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      .+...+..+..|.    .+.+.++  ......+..+.+|+.|.+.++.+...
T Consensus       681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI  732 (889)
T ss_pred             HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence            0111112222222    2222222  44555677788888888888877654

>PLN03150 hypothetical protein; Provisional

Probab=98.87  E-value=4e-09  Score=97.59  Aligned_cols=104  Identities=20%  Similarity=0.286  Sum_probs=62.6

Q ss_pred             ccEEeccccccc-ccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           93 ITRLYLDETAIE-EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        93 L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      ++.|+|++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            455566666653 5555666666666666666666656666666666666666666666666666666666666666666


Q ss_pred             CcccccCCCccccc-ccCceecCCCC
Q 039599          172 TTITEQRPSSFENV-KGLETLGFSEL  196 (293)
Q Consensus       172 n~~~~~~~~~~~~~-~~L~~L~l~~~  196 (293)
                      |.+.+.+|..+... .++..+++.+|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCC
Confidence            66666666554432 23444555444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.87  E-value=2.1e-10  Score=94.34  Aligned_cols=214  Identities=19%  Similarity=0.227  Sum_probs=139.1

Q ss_pred             CceEEeecCCcCCccc-------CCCCCCccEEeccccc----ccccCc-------cccCCCCCCEEEeccCcccccccc
Q 039599           71 SPVTIDFTSCINLTDF-------PHISGNITRLYLDETA----IEEVPS-------SIKCLTNLKLLRINRCTRLKRVST  132 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~-------~~~~~~L~~L~l~~~~----~~~l~~-------~~~~l~~L~~L~l~~~~~~~~~~~  132 (293)
                      .++.+++++|.+...-       -....+|+..++++-.    ..++|+       ++..++.|+++++++|.+....++
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            5667777776644321       1122355555555421    234443       445677889999998876654443


Q ss_pred             ----ccccccccceecccccccCCCC-------------ChhhhccccCCceecCCCcccccCC----CcccccccCcee
Q 039599          133 ----SICKLKSLIALSAYGCLNLERF-------------PESLEKMEHLNQINLGRTTITEQRP----SSFENVKGLETL  191 (293)
Q Consensus       133 ----~l~~l~~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L  191 (293)
                          .+.++..|++|.+.+|.+...-             ......-++|+++...+|.+.....    ..|...+.|+.+
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev  190 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV  190 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence                3456788999999888665211             1122344689999999998843221    235556889999


Q ss_pred             cCCCCc-------cccccccCccccceecccCCCccCCCC--cCCCCccCcccccCCccccceeecCCccCCc-----CC
Q 039599          192 GFSELD-------NLSDNIGNFKSFEYMGAHGSAISQLPS--LSSGLVPLSASLLSGLSLLYWLHLNNCALTS-----IP  257 (293)
Q Consensus       192 ~l~~~~-------~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-----l~  257 (293)
                      .+..|+       .+...+.++++|+.|++..|.++..-.  +..        .++.+++|+++++++|.+..     +.
T Consensus       191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak--------aL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK--------ALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH--------HhcccchheeecccccccccccHHHHH
Confidence            998882       234467899999999999998876511  111        15567889999999998876     22


Q ss_pred             ccc-CCCCCCcEEeccCCcCCC-----CchhHhhcccCCCC
Q 039599          258 QEI-GYLSSLEWLHLRGNNLEG-----LPASIKQISRLESL  292 (293)
Q Consensus       258 ~~~-~~~~~L~~L~l~~n~l~~-----~p~~l~~l~~L~~l  292 (293)
                      .++ ...|+|+.+++.+|.++.     +...+...+.|.+|
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kL  303 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKL  303 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHh
Confidence            333 358999999999999983     33344455666554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=1.2e-09  Score=96.46  Aligned_cols=192  Identities=20%  Similarity=0.243  Sum_probs=106.3

Q ss_pred             CceEEeecCCcCCccc--CCCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599           71 SPVTIDFTSCINLTDF--PHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC  148 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  148 (293)
                      .++.+++..+.+....  ...+.++..+++.+|.+..+...+..+++|++|++++|.+....+  +..++.|+.|++.+|
T Consensus        73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN  150 (414)
T ss_pred             hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC
Confidence            4445555555533211  234456666677777776665555666777777777766544322  345555777777776


Q ss_pred             ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC-ccccccccCccccceecccCCCccCCCCcCC
Q 039599          149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNLSDNIGNFKSFEYMGAHGSAISQLPSLSS  227 (293)
Q Consensus       149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~  227 (293)
                      .+.. + +.+..++.|+.+++++|.+...-+.....+.+++.+.+.++ ......+..+..+..+.+..|.+..+..   
T Consensus       151 ~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~---  225 (414)
T KOG0531|consen  151 LISD-I-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG---  225 (414)
T ss_pred             cchh-c-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC---
Confidence            4432 1 22344666777777777664433200345566666666666 2223333344444444555555544411   


Q ss_pred             CCccCcccccCCcc--ccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC
Q 039599          228 GLVPLSASLLSGLS--LLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       228 ~l~~l~~~~~~~~~--~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~  278 (293)
                               +..+.  +|+.+++++|++..++..+..++.+..+++..|++..
T Consensus       226 ---------l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  226 ---------LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             ---------cccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence                     11112  2677777777777665556667777777777776653

>PLN03150 hypothetical protein; Provisional

Probab=98.73  E-value=1.6e-08  Score=93.60  Aligned_cols=83  Identities=23%  Similarity=0.374  Sum_probs=47.8

Q ss_pred             cceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccC
Q 039599          140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHG  216 (293)
Q Consensus       140 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~  216 (293)
                      ++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|   +.+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            455555555555555555555556666666666555555555555556666666555   34555555556666666666


Q ss_pred             CCccCC
Q 039599          217 SAISQL  222 (293)
Q Consensus       217 ~~~~~~  222 (293)
                      |.+.+.
T Consensus       500 N~l~g~  505 (623)
T PLN03150        500 NSLSGR  505 (623)
T ss_pred             Cccccc
Confidence            555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=2.1e-08  Score=63.28  Aligned_cols=58  Identities=22%  Similarity=0.269  Sum_probs=36.7

Q ss_pred             CccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599           92 NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL  149 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  149 (293)
                      +|++|++++|.+..+|+ .|.++++|++|++++|.+....+..+..+++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666666666664 55666777777777666655445556666666666666653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=2.8e-08  Score=62.70  Aligned_cols=61  Identities=16%  Similarity=0.209  Sum_probs=37.9

Q ss_pred             CCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcc
Q 039599          114 TNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTI  174 (293)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~  174 (293)
                      ++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566777777655543345566666777777776665544455666666666666666653

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.60  E-value=5.7e-08  Score=92.39  Aligned_cols=199  Identities=21%  Similarity=0.252  Sum_probs=95.3

Q ss_pred             CccEEeccccc--ccccCcc-ccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCcee
Q 039599           92 NITRLYLDETA--IEEVPSS-IKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQIN  168 (293)
Q Consensus        92 ~L~~L~l~~~~--~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  168 (293)
                      +|+.|-+.+|.  +..++.. |..++.|++||+++|.....+|..++.+-+|++|+++++. ...+|..++++++|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheec
Confidence            45555555543  3444432 4556666666666655555566666666666666666653 235566666666666666


Q ss_pred             cCCCcccccCCCcccccccCceecCCCC-----ccccccccCccccceecccCCCc---cCC---CCcCCCCccCc----
Q 039599          169 LGRTTITEQRPSSFENVKGLETLGFSEL-----DNLSDNIGNFKSFEYMGAHGSAI---SQL---PSLSSGLVPLS----  233 (293)
Q Consensus       169 l~~n~~~~~~~~~~~~~~~L~~L~l~~~-----~~l~~~~~~l~~L~~L~l~~~~~---~~~---~~l~~~l~~l~----  233 (293)
                      +..+.....++.....+.+|++|.+...     ......+..+.+|+.+.......   ..+   +.+....+.+.    
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~  704 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC  704 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc
Confidence            6655443333333444566666655443     11122333444444444332222   000   00000000000    


Q ss_pred             -----ccccCCccccceeecCCccCCcCCc-cc-----CC-CCCCcEEeccCCcCCCCchhHhhcccCCC
Q 039599          234 -----ASLLSGLSLLYWLHLNNCALTSIPQ-EI-----GY-LSSLEWLHLRGNNLEGLPASIKQISRLES  291 (293)
Q Consensus       234 -----~~~~~~~~~L~~L~l~~n~i~~l~~-~~-----~~-~~~L~~L~l~~n~l~~~p~~l~~l~~L~~  291 (293)
                           ...++.+.+|+.|.+.+|.+.++.. +.     .. ++++..+...++..-..+.+..-.++|+.
T Consensus       705 ~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~  774 (889)
T KOG4658|consen  705 SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTS  774 (889)
T ss_pred             ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccE
Confidence                 0125567778888888887765221 11     11 33455555555544444444444555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1e-09  Score=88.68  Aligned_cols=153  Identities=16%  Similarity=0.136  Sum_probs=85.5

Q ss_pred             cceecccccccCC-CCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCcccc-----ccccCccccceec
Q 039599          140 LIALSAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLS-----DNIGNFKSFEYMG  213 (293)
Q Consensus       140 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~l~~L~~L~  213 (293)
                      ++++|++...+.. .+...++.+.+|+.|.+.|+.+.+.+...+.+..+|+.++++.+..+.     -.+..++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            5555555543331 122234555566666666666655544455555566666666552221     1334555666666


Q ss_pred             ccCCCccCC------CCcCCCCccCcccc-------------cCCccccceeecCCc-cCCc-CCcccCCCCCCcEEecc
Q 039599          214 AHGSAISQL------PSLSSGLVPLSASL-------------LSGLSLLYWLHLNNC-ALTS-IPQEIGYLSSLEWLHLR  272 (293)
Q Consensus       214 l~~~~~~~~------~~l~~~l~~l~~~~-------------~~~~~~L~~L~l~~n-~i~~-l~~~~~~~~~L~~L~l~  272 (293)
                      ++.|.....      ..+.+.++.|+++.             .+.+++|.+||+++| .++. ....+..++.|+.|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            665554332      11335555555432             457889999999988 4555 44456678889999999


Q ss_pred             CCcCCCCch---hHhhcccCCCCC
Q 039599          273 GNNLEGLPA---SIKQISRLESLD  293 (293)
Q Consensus       273 ~n~l~~~p~---~l~~l~~L~~ld  293 (293)
                      .|+.- +|.   .+.+.|+|.+||
T Consensus       347 RCY~i-~p~~~~~l~s~psl~yLd  369 (419)
T KOG2120|consen  347 RCYDI-IPETLLELNSKPSLVYLD  369 (419)
T ss_pred             hhcCC-ChHHeeeeccCcceEEEE
Confidence            88643 121   244556665553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.55  E-value=7e-08  Score=56.11  Aligned_cols=41  Identities=32%  Similarity=0.447  Sum_probs=35.1

Q ss_pred             cccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCch
Q 039599          241 SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPA  281 (293)
Q Consensus       241 ~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~  281 (293)
                      ++|++|++++|.|+++|..++.+++|+.|++++|+++++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            46899999999999998889999999999999999997654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.53  E-value=1.5e-08  Score=89.64  Aligned_cols=185  Identities=22%  Similarity=0.293  Sum_probs=131.0

Q ss_pred             CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599           90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL  169 (293)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  169 (293)
                      +..++.+.+..|.+++....+..+++|..|++.+|.+... ...+..+++|++|++++|.+.. + ..+..++.|+.|++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccc-c-cchhhccchhhhee
Confidence            4466677788888887656678889999999999876553 3226789999999999996654 3 34667778999999


Q ss_pred             CCCcccccCCCcccccccCceecCCCC--cccccc-ccCccccceecccCCCccCCCCcCCCCccCcccccCCcccccee
Q 039599          170 GRTTITEQRPSSFENVKGLETLGFSEL--DNLSDN-IGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWL  246 (293)
Q Consensus       170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~-~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L  246 (293)
                      ++|.+...  ..+..++.|+.+++++|  ..+... ...+..++.+.+.+|.+..+..            +..+..+..+
T Consensus       148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~------------~~~~~~l~~~  213 (414)
T KOG0531|consen  148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG------------LDLLKKLVLL  213 (414)
T ss_pred             ccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc------------hHHHHHHHHh
Confidence            99999543  34556889999999998  223221 4788899999999998877632            2233445556


Q ss_pred             ecCCccCCcCCcccCCCCC--CcEEeccCCcCCCCchhHhhcccCCCC
Q 039599          247 HLNNCALTSIPQEIGYLSS--LEWLHLRGNNLEGLPASIKQISRLESL  292 (293)
Q Consensus       247 ~l~~n~i~~l~~~~~~~~~--L~~L~l~~n~l~~~p~~l~~l~~L~~l  292 (293)
                      ++..|.++.+-+ +..++.  |+.+++++|.+..++..+..+..+..+
T Consensus       214 ~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l  260 (414)
T KOG0531|consen  214 SLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVL  260 (414)
T ss_pred             hcccccceeccC-cccchhHHHHHHhcccCcccccccccccccccccc
Confidence            788887776432 223333  899999999998765444444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=8.8e-09  Score=83.43  Aligned_cols=174  Identities=18%  Similarity=0.219  Sum_probs=100.8

Q ss_pred             CccEEeccccccc--ccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC--hhhhccccCCce
Q 039599           92 NITRLYLDETAIE--EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP--ESLEKMEHLNQI  167 (293)
Q Consensus        92 ~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L  167 (293)
                      .+++|||+...++  .+...++.|.+|+.|.+.++.....+...+....+|+.++++.|.-.....  -.+..++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4777777777664  333345667777777777777666665666677777777777765443322  235667777788


Q ss_pred             ecCCCcccccCCCc-ccc-cccCceecCCCC-cc-----ccccccCccccceecccCCCccCCCCcCCCCccCcccccCC
Q 039599          168 NLGRTTITEQRPSS-FEN-VKGLETLGFSEL-DN-----LSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSG  239 (293)
Q Consensus       168 ~l~~n~~~~~~~~~-~~~-~~~L~~L~l~~~-~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~  239 (293)
                      ++++|......... +.+ -++|..|+++|+ ..     +.--..+++++.+|++++|..-.- ...        ..+-.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~--------~~~~k  336 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCF--------QEFFK  336 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHH--------HHHHh
Confidence            88777664322211 222 256777777776 11     122234677777777776642211 100        01335


Q ss_pred             ccccceeecCCcc-CCc-CCcccCCCCCCcEEeccCC
Q 039599          240 LSLLYWLHLNNCA-LTS-IPQEIGYLSSLEWLHLRGN  274 (293)
Q Consensus       240 ~~~L~~L~l~~n~-i~~-l~~~~~~~~~L~~L~l~~n  274 (293)
                      ++.|++|.++.|. |.. ---.+...|+|.+||+-++
T Consensus       337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            5667777777773 211 1112456777777777765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.40  E-value=4.3e-09  Score=88.76  Aligned_cols=275  Identities=15%  Similarity=0.198  Sum_probs=161.1

Q ss_pred             ecCcccceeech--hhccCCccccEEEEeccceeeecccc--------eEEEeccCCcccccCC---CCCCCcCceEEee
Q 039599           11 NLSTIKGINLNL--RAFSNMSNLRVLKFYIPEISVHMSIE--------EQLLDSKGCKILRSFP---SNLHFVSPVTIDF   77 (293)
Q Consensus        11 ~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~L~l~~~~~~~~~~---~~~~~~~L~~L~l   77 (293)
                      .+.++..+...+  ..-.+++++++|++.+|....+....        ++++++.+|.......   -.-++++|++|++
T Consensus       144 SlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNl  223 (483)
T KOG4341|consen  144 SLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNL  223 (483)
T ss_pred             cccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhh
Confidence            445554443332  24457778888888888755443222        7888888876433211   1235778999999


Q ss_pred             cCCcCCcc-----cCCCCCCccEEeccccccc---ccCccccCCCCCCEEEeccCccccccc--cccccccccceecccc
Q 039599           78 TSCINLTD-----FPHISGNITRLYLDETAIE---EVPSSIKCLTNLKLLRINRCTRLKRVS--TSICKLKSLIALSAYG  147 (293)
Q Consensus        78 ~~~~~~~~-----~~~~~~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~  147 (293)
                      ++|+..+.     +..+...++.+.+.||.-.   .+...-..+..+..+++..|.......  ..-..+..|+.++.+.
T Consensus       224 Swc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~  303 (483)
T KOG4341|consen  224 SWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSS  303 (483)
T ss_pred             ccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccC
Confidence            99886554     1223334555555554321   111222445566777776765443322  1123467888898888


Q ss_pred             cccCCCCC--hhhhccccCCceecCCCc-ccccCCCcc-cccccCceecCCCC-----ccccccccCccccceecccCCC
Q 039599          148 CLNLERFP--ESLEKMEHLNQINLGRTT-ITEQRPSSF-ENVKGLETLGFSEL-----DNLSDNIGNFKSFEYMGAHGSA  218 (293)
Q Consensus       148 ~~~~~~~~--~~~~~l~~L~~L~l~~n~-~~~~~~~~~-~~~~~L~~L~l~~~-----~~l~~~~~~l~~L~~L~l~~~~  218 (293)
                      |...+..+  ....+..+|+.+.++++. +++.....+ .+++.|+.+++.++     ..+.....+++.|+.+.+++|.
T Consensus       304 ~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce  383 (483)
T KOG4341|consen  304 CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE  383 (483)
T ss_pred             CCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence            76654322  234567889999998875 322222222 36788999998887     2344455678889999998876


Q ss_pred             ccCCCCcCCCCccCcccccCCccccceeecCCcc-CCc-CCcccCCCCCCcEEeccCCc-CCC--CchhHhhcccCC
Q 039599          219 ISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCA-LTS-IPQEIGYLSSLEWLHLRGNN-LEG--LPASIKQISRLE  290 (293)
Q Consensus       219 ~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~-i~~-l~~~~~~~~~L~~L~l~~n~-l~~--~p~~l~~l~~L~  290 (293)
                      .....    +++.+.. .-.+...++.+.++++. +++ .-..+..+++|+.+++-+++ ++.  +...-.++|+++
T Consensus       384 ~itD~----gi~~l~~-~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~  455 (483)
T KOG4341|consen  384 LITDE----GIRHLSS-SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK  455 (483)
T ss_pred             hhhhh----hhhhhhh-ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence            43331    1111111 01245667888888885 444 44456778899999988874 332  444445566654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=9.4e-08  Score=77.57  Aligned_cols=197  Identities=15%  Similarity=0.098  Sum_probs=102.9

Q ss_pred             ceEEeecCCcCCcc-----cCCCCCCccEEecccccccccC---ccccCCCCCCEEEeccCcccccccccccccccccee
Q 039599           72 PVTIDFTSCINLTD-----FPHISGNITRLYLDETAIEEVP---SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIAL  143 (293)
Q Consensus        72 L~~L~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  143 (293)
                      ++.+.+.+|.+-..     +......++++||.+|.+..+.   ..+.++|.|++|+++.|.....+...-....+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            44555666653321     2233457888888888876443   344778888888888877654332111245577888


Q ss_pred             cccccccCC-CCChhhhccccCCceecCCCcccccCC--Ccccc-cccCceecCCCC-----ccccccccCccccceecc
Q 039599          144 SAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRP--SSFEN-VKGLETLGFSEL-----DNLSDNIGNFKSFEYMGA  214 (293)
Q Consensus       144 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~-~~~L~~L~l~~~-----~~l~~~~~~l~~L~~L~l  214 (293)
                      .+.+..+.. .....+..++++++|.++-|.+.....  ..... -+.+.+++...|     ...-......+++..+.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            777764442 233445667777777777764311000  01111 124555555555     011111122345555555


Q ss_pred             cCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc--CCcccCCCCCCcEEeccCCcCC
Q 039599          215 HGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS--IPQEIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       215 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~--l~~~~~~~~~L~~L~l~~n~l~  277 (293)
                      -.|++.+...- .        .+...+.+..|+++.++|.+  --+++..++.|..|.++++.+.
T Consensus       207 ~e~PlK~~s~e-k--------~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  207 CEGPLKTESSE-K--------GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             ecCcccchhhc-c--------cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            55555443110 0        12233444556666666655  2244566666666777666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.22  E-value=3.1e-06  Score=73.13  Aligned_cols=133  Identities=23%  Similarity=0.339  Sum_probs=79.9

Q ss_pred             ccCCccccEEEEeccceeeecccc--eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEeccccc
Q 039599           25 FSNMSNLRVLKFYIPEISVHMSIE--EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETA  102 (293)
Q Consensus        25 ~~~~~~L~~L~l~~~~~~~~~~~~--l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~  102 (293)
                      +..+.++++|++++|.+...+.+.  |+.|.+++|..+..+|..+ ..+|+.|++++|..+..+|.   .|+.|++..+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~---sLe~L~L~~n~  123 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE---SVRSLEIKGSA  123 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc---ccceEEeCCCC
Confidence            445688999999999777555443  9999999988877777644 24899999999965666665   46677776654


Q ss_pred             ---ccccCccccCCCCCCEEEeccCcccc--ccccccccccccceecccccccCCCCChhhhccccCCceecCCC
Q 039599          103 ---IEEVPSSIKCLTNLKLLRINRCTRLK--RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT  172 (293)
Q Consensus       103 ---~~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n  172 (293)
                         +..+|+.      |+.|.+.+++...  ..+..  -.++|++|++++|.... +|+.+-  .+|+.|.++.+
T Consensus       124 ~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        124 TDSIKNVPNG------LTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccccCcch------Hhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence               3455553      4455553322110  01100  11356777776665431 222111  35666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.20  E-value=1.4e-07  Score=67.92  Aligned_cols=103  Identities=18%  Similarity=0.231  Sum_probs=45.3

Q ss_pred             CCceecCCCcccccCCCccc---ccccCceecCCCC--cccccccc-CccccceecccCCCccCCCCcCCCCccCccccc
Q 039599          164 LNQINLGRTTITEQRPSSFE---NVKGLETLGFSEL--DNLSDNIG-NFKSFEYMGAHGSAISQLPSLSSGLVPLSASLL  237 (293)
Q Consensus       164 L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~~--~~l~~~~~-~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~  237 (293)
                      +..++++.|.+ ..+++...   ....|...++++|  ..+|..+. +.+.++.+++.+|.++++|.           -+
T Consensus        29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe-----------E~   96 (177)
T KOG4579|consen   29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE-----------EL   96 (177)
T ss_pred             hhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH-----------HH
Confidence            45566666655 23333322   2334444455555  33443332 22344444444444444443           12


Q ss_pred             CCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC
Q 039599          238 SGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       238 ~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~  278 (293)
                      +.++.|+.++++.|.+...|..+..+.++..|+..+|.+..
T Consensus        97 Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen   97 AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             hhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcccc
Confidence            34444444444444444444333334444444444444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.14  E-value=6.6e-08  Score=77.47  Aligned_cols=238  Identities=14%  Similarity=0.097  Sum_probs=115.0

Q ss_pred             hhccCCccccEEEEeccceeeecccc----------eEEEeccCCccccc------------CCCCCCCcCceEEeecCC
Q 039599           23 RAFSNMSNLRVLKFYIPEISVHMSIE----------EQLLDSKGCKILRS------------FPSNLHFVSPVTIDFTSC   80 (293)
Q Consensus        23 ~~~~~~~~L~~L~l~~~~~~~~~~~~----------l~~L~l~~~~~~~~------------~~~~~~~~~L~~L~l~~~   80 (293)
                      ..+..|..++.+++++|.+.....-.          |+...++.- +++.            ++....|++|+..++++|
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            34455677778888887776432100          343333332 1111            123346778888888888


Q ss_pred             cCCcccCCCC-------CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCC
Q 039599           81 INLTDFPHIS-------GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE  152 (293)
Q Consensus        81 ~~~~~~~~~~-------~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  152 (293)
                      .+...+|..+       ..|.+|.+++|+++.+.. .++.  .|.+|  ..|       ....+-|.|+++++.+|++..
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~n-------KKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYN-------KKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHH-------hhhccCCCceEEEeccchhcc
Confidence            7766665432       356667777776653321 0100  00000  000       011233455555555554331


Q ss_pred             C----CChhhhccccCCceecCCCcccccCCC-----cccccccCceecCCCC-------ccccccccCccccceecccC
Q 039599          153 R----FPESLEKMEHLNQINLGRTTITEQRPS-----SFENVKGLETLGFSEL-------DNLSDNIGNFKSFEYMGAHG  216 (293)
Q Consensus       153 ~----~~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~~~L~~L~l~~~-------~~l~~~~~~l~~L~~L~l~~  216 (293)
                      -    ....+.....|+++.+..|.+.-....     .+.-+++|+.|++.+|       ..+...+..|+.|+.|.++.
T Consensus       172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD  251 (388)
T COG5238         172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND  251 (388)
T ss_pred             CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence            0    011122334566666666655221110     1223456666666666       22334455666677777777


Q ss_pred             CCccCC-C-CcCCCCccCcccccCCccccceeecCCccCCc--C-----Cccc-CCCCCCcEEeccCCcCCC
Q 039599          217 SAISQL-P-SLSSGLVPLSASLLSGLSLLYWLHLNNCALTS--I-----PQEI-GYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       217 ~~~~~~-~-~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~--l-----~~~~-~~~~~L~~L~l~~n~l~~  278 (293)
                      |.++.. . .......      =...++|+.|...+|.+..  +     +... ..+|-|..|.+.+|.+..
T Consensus       252 Clls~~G~~~v~~~f~------e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         252 CLLSNEGVKSVLRRFN------EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhhccccHHHHHHHhh------hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            766543 1 1100000      0123556667777764432  1     1111 346777777777777764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.10  E-value=1.5e-07  Score=85.00  Aligned_cols=87  Identities=20%  Similarity=0.210  Sum_probs=38.6

Q ss_pred             cccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCC-cccccccCceecCCCC-ccccccccCcccc
Q 039599          132 TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPS-SFENVKGLETLGFSEL-DNLSDNIGNFKSF  209 (293)
Q Consensus       132 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~~-~~l~~~~~~l~~L  209 (293)
                      .++.-++.++.|++++|++...  ..+..+++|++||+++|.+. .+|. ....++ |+.|.+.+| -+-...+.++++|
T Consensus       181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL  256 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSL  256 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhhhhHHhhhhh
Confidence            3344445555555555544321  14445555555555555552 2222 112222 555555554 1112234445555


Q ss_pred             ceecccCCCccCC
Q 039599          210 EYMGAHGSAISQL  222 (293)
Q Consensus       210 ~~L~l~~~~~~~~  222 (293)
                      +.|+++.|-+.+.
T Consensus       257 ~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEH  269 (1096)
T ss_pred             hccchhHhhhhcc
Confidence            5555555544443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.09  E-value=8.3e-07  Score=71.31  Aligned_cols=199  Identities=16%  Similarity=0.181  Sum_probs=122.9

Q ss_pred             CceEEeecCCcCCcccCC----C---CCCccEEeccccccc----ccC-------ccccCCCCCCEEEeccCcccccccc
Q 039599           71 SPVTIDFTSCINLTDFPH----I---SGNITRLYLDETAIE----EVP-------SSIKCLTNLKLLRINRCTRLKRVST  132 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~----~---~~~L~~L~l~~~~~~----~l~-------~~~~~l~~L~~L~l~~~~~~~~~~~  132 (293)
                      .+..+++++|.+.++-..    .   ..+|+..++++-..+    +++       +++..||+|+..++++|.+....|+
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            788899999986654221    1   235555555553221    332       4566788899999998877666654


Q ss_pred             c----cccccccceecccccccCC----CCChhh---------hccccCCceecCCCcccccCCCc-----ccccccCce
Q 039599          133 S----ICKLKSLIALSAYGCLNLE----RFPESL---------EKMEHLNQINLGRTTITEQRPSS-----FENVKGLET  190 (293)
Q Consensus       133 ~----l~~l~~L~~L~l~~~~~~~----~~~~~~---------~~l~~L~~L~l~~n~~~~~~~~~-----~~~~~~L~~  190 (293)
                      .    +++-..|++|.+++|.+..    .+..++         ..-|.|++.....|.+ ...+..     +..-.+|++
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKELSAALLESHENLKE  189 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHHHHHHHHhhcCcee
Confidence            3    4456788888888886542    122111         2346788888888877 334432     111246777


Q ss_pred             ecCCCCccccc--------cccCccccceecccCCCccCC-CC-cCCCCccCcccccCCccccceeecCCccCCc--CCc
Q 039599          191 LGFSELDNLSD--------NIGNFKSFEYMGAHGSAISQL-PS-LSSGLVPLSASLLSGLSLLYWLHLNNCALTS--IPQ  258 (293)
Q Consensus       191 L~l~~~~~l~~--------~~~~l~~L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~--l~~  258 (293)
                      +.+..|+.-|.        .+..+++|+.|++..|.++.. .. +..        .+..++.|++|.+..|-++.  ...
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~--------al~~W~~lrEL~lnDClls~~G~~~  261 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD--------ALCEWNLLRELRLNDCLLSNEGVKS  261 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH--------HhcccchhhhccccchhhccccHHH
Confidence            87777733333        345677888888888877655 11 110        13456678888888887654  211


Q ss_pred             ---cc--CCCCCCcEEeccCCcCCC
Q 039599          259 ---EI--GYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       259 ---~~--~~~~~L~~L~l~~n~l~~  278 (293)
                         .+  ...|+|+.|...+|...+
T Consensus       262 v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         262 VLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             HHHHhhhhcCCCccccccchhhhcC
Confidence               12  247888888888887653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.01  E-value=1e-07  Score=85.96  Aligned_cols=101  Identities=27%  Similarity=0.321  Sum_probs=52.1

Q ss_pred             CCceecCCCcccccCCCcccccccCceecCCCCc-cccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccc
Q 039599          164 LNQINLGRTTITEQRPSSFENVKGLETLGFSELD-NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSL  242 (293)
Q Consensus       164 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~  242 (293)
                      |.+.+.+.|.+. .+-.++.-++.++.|++++|+ .-...+..++.|++|+++.|.+..+|.+.          -.++ .
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~----------~~gc-~  233 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLS----------MVGC-K  233 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccc----------hhhh-h
Confidence            455555555552 222344445566666666661 11224555666666666666666665532          1122 2


Q ss_pred             cceeecCCccCCcCCcccCCCCCCcEEeccCCcCC
Q 039599          243 LYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       243 L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~  277 (293)
                      |+.|.+++|.++.+.+ +.++++|+.||+++|-+.
T Consensus       234 L~~L~lrnN~l~tL~g-ie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTLRG-IENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             heeeeecccHHHhhhh-HHhhhhhhccchhHhhhh
Confidence            5555555555554432 445555555555555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.00  E-value=1.9e-05  Score=68.35  Aligned_cols=65  Identities=25%  Similarity=0.423  Sum_probs=37.2

Q ss_pred             eEEEeccCCcccccCCCCCCCc-CceEEeecCCcCCcccCCCC-CCccEEecccc-cccccCccccCCCCCCEEEecc
Q 039599           49 EQLLDSKGCKILRSFPSNLHFV-SPVTIDFTSCINLTDFPHIS-GNITRLYLDET-AIEEVPSSIKCLTNLKLLRINR  123 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~  123 (293)
                      ++.|++++|. +..+|   ..+ +|+.|++++|..++.+|..+ .+|++|++++| .+..+|+      +|+.|++..
T Consensus        54 l~~L~Is~c~-L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~  121 (426)
T PRK15386         54 SGRLYIKDCD-IESLP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE------SVRSLEIKG  121 (426)
T ss_pred             CCEEEeCCCC-CcccC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc------ccceEEeCC
Confidence            5666776663 44445   234 66777777666666666443 36666666665 4555543      345555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=1.5e-05  Score=46.30  Aligned_cols=36  Identities=25%  Similarity=0.421  Sum_probs=27.1

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCccc
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRL  127 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  127 (293)
                      +|++|++++|+++.+|+.++++++|++|++++|.+.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            577888888888888777888888888888887654

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.80  E-value=4.1e-07  Score=77.04  Aligned_cols=236  Identities=19%  Similarity=0.204  Sum_probs=122.0

Q ss_pred             eEEEeccCCcccccCCC---CCCCcCceEEeecCCcCCccc-----CCCCCCccEEecccc-cccccC-c-cccCCCCCC
Q 039599           49 EQLLDSKGCKILRSFPS---NLHFVSPVTIDFTSCINLTDF-----PHISGNITRLYLDET-AIEEVP-S-SIKCLTNLK  117 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~-----~~~~~~L~~L~l~~~-~~~~l~-~-~~~~l~~L~  117 (293)
                      ++.|.+.||...+.-+.   .-.+++++.|++.+|..+++.     .....+++++++..+ .++... . -..++++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            56666666654332221   113557777777777655432     223346666666663 233111 1 224566677


Q ss_pred             EEEeccCccccc--ccccccccccccee--------------------------cccccccCCCCC--hhhhccccCCce
Q 039599          118 LLRINRCTRLKR--VSTSICKLKSLIAL--------------------------SAYGCLNLERFP--ESLEKMEHLNQI  167 (293)
Q Consensus       118 ~L~l~~~~~~~~--~~~~l~~l~~L~~L--------------------------~l~~~~~~~~~~--~~~~~l~~L~~L  167 (293)
                      +++++.|.-...  +-....++..++++                          ++..|...+.-.  ..-..+..|+.+
T Consensus       220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l  299 (483)
T KOG4341|consen  220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL  299 (483)
T ss_pred             HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence            777666542221  00111123333333                          333332221110  011234566777


Q ss_pred             ecCCCcc-cccCCCcc-cccccCceecCCCCccccc-----cccCccccceecccCCCccCCCCcCCCCccCcccccCCc
Q 039599          168 NLGRTTI-TEQRPSSF-ENVKGLETLGFSELDNLSD-----NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGL  240 (293)
Q Consensus       168 ~l~~n~~-~~~~~~~~-~~~~~L~~L~l~~~~~l~~-----~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~  240 (293)
                      ..+++.. ++.....+ .+..+|+.+.+.+++.+.+     --.+++.|+.+++.++.......    +.+    .-.++
T Consensus       300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t----L~s----ls~~C  371 (483)
T KOG4341|consen  300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT----LAS----LSRNC  371 (483)
T ss_pred             cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh----Hhh----hccCC
Confidence            7766543 11111122 3567788888877733322     22356677777777665433211    111    13478


Q ss_pred             cccceeecCCc-cCCcC-----CcccCCCCCCcEEeccCCcCCC--CchhHhhcccCCCC
Q 039599          241 SLLYWLHLNNC-ALTSI-----PQEIGYLSSLEWLHLRGNNLEG--LPASIKQISRLESL  292 (293)
Q Consensus       241 ~~L~~L~l~~n-~i~~l-----~~~~~~~~~L~~L~l~~n~l~~--~p~~l~~l~~L~~l  292 (293)
                      +.|+.+.++.| .|++-     ...-..+..|+.+.+++++...  .-..+..+++|+.+
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri  431 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI  431 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence            88999999988 45552     2233567889999999997764  33446667777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.79  E-value=9.1e-06  Score=75.72  Aligned_cols=81  Identities=16%  Similarity=0.240  Sum_probs=33.0

Q ss_pred             CccEEecccccc--cccCccc-cCCCCCCEEEeccCcccc-ccccccccccccceecccccccCCCCChhhhccccCCce
Q 039599           92 NITRLYLDETAI--EEVPSSI-KCLTNLKLLRINRCTRLK-RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQI  167 (293)
Q Consensus        92 ~L~~L~l~~~~~--~~l~~~~-~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  167 (293)
                      +|++|+++|...  ...|..+ .-+|+|+.|.+.+-.... ++.....++++|..||++++.+.. + .+++.+++|++|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHH
Confidence            455555544332  1223333 224555555555422211 111222244555555555543321 1 344455555555


Q ss_pred             ecCCCcc
Q 039599          168 NLGRTTI  174 (293)
Q Consensus       168 ~l~~n~~  174 (293)
                      .+.+-.+
T Consensus       201 ~mrnLe~  207 (699)
T KOG3665|consen  201 SMRNLEF  207 (699)
T ss_pred             hccCCCC
Confidence            4444333

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.76  E-value=8.1e-06  Score=76.06  Aligned_cols=107  Identities=20%  Similarity=0.231  Sum_probs=57.3

Q ss_pred             CCCCEEEeccCccccc-cccccc-cccccceecccccccC-CCCChhhhccccCCceecCCCcccccCCCcccccccCce
Q 039599          114 TNLKLLRINRCTRLKR-VSTSIC-KLKSLIALSAYGCLNL-ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLET  190 (293)
Q Consensus       114 ~~L~~L~l~~~~~~~~-~~~~l~-~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  190 (293)
                      .+|++|+++|...... -+..++ .+|.|+.|.+.+-.+. +.+-.....+++|..||++++.++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4677777776443221 122222 4677777777664332 22233345667777777777766432  44566677777


Q ss_pred             ecCCCC--c--cccccccCccccceecccCCCccCC
Q 039599          191 LGFSEL--D--NLSDNIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       191 L~l~~~--~--~l~~~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      |.+.+-  .  .--..+..+++|+.|+++.......
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~  235 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD  235 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccc
Confidence            666543  1  1112445566666666665554433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=1e-05  Score=66.01  Aligned_cols=188  Identities=14%  Similarity=0.104  Sum_probs=96.0

Q ss_pred             EEecccccccccCc--cc-cCCCCCCEEEeccCcccc--ccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599           95 RLYLDETAIEEVPS--SI-KCLTNLKLLRINRCTRLK--RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL  169 (293)
Q Consensus        95 ~L~l~~~~~~~l~~--~~-~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  169 (293)
                      -+.+.++.|...-.  .| ..++.++.+++.+|.+..  ++...+.++|.|+.|+++.|.+...+...-....+|++|-+
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL  128 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL  128 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence            34455555543322  12 345566777777776544  23333456777777777777655433221134456667766


Q ss_pred             CCCcccccCC-CcccccccCceecCCCC---ccc--cccccC-ccccceecccCCCccCCCCcCCCCccCcccccCCccc
Q 039599          170 GRTTITEQRP-SSFENVKGLETLGFSEL---DNL--SDNIGN-FKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSL  242 (293)
Q Consensus       170 ~~n~~~~~~~-~~~~~~~~L~~L~l~~~---~~l--~~~~~~-l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~  242 (293)
                      .|..+.=... ..+..++.+++++++.|   +..  .++... -+.+++++..+|....+...        ...-+-.|+
T Consensus       129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~--------~~l~r~Fpn  200 (418)
T KOG2982|consen  129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK--------NKLSRIFPN  200 (418)
T ss_pred             cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH--------HhHHhhccc
Confidence            6655521111 12334555556655554   000  001111 12334444444432222000        001234577


Q ss_pred             cceeecCCccCCcC--CcccCCCCCCcEEeccCCcCCC--CchhHhhcccCC
Q 039599          243 LYWLHLNNCALTSI--PQEIGYLSSLEWLHLRGNNLEG--LPASIKQISRLE  290 (293)
Q Consensus       243 L~~L~l~~n~i~~l--~~~~~~~~~L~~L~l~~n~l~~--~p~~l~~l~~L~  290 (293)
                      +..+.+-.|.+.+.  ......+|.+..|+|+.|++.+  --+.+..++.|+
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~  252 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLV  252 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhh
Confidence            88888888888773  3346678888899999998875  223455555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.67  E-value=4e-05  Score=59.15  Aligned_cols=20  Identities=5%  Similarity=0.218  Sum_probs=9.5

Q ss_pred             ccCccccceecccCCCccCC
Q 039599          203 IGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       203 ~~~l~~L~~L~l~~~~~~~~  222 (293)
                      +..++.|.+|.++.|.+..+
T Consensus        60 lp~l~rL~tLll~nNrIt~I   79 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRI   79 (233)
T ss_pred             CCCccccceEEecCCcceee
Confidence            33444444445555554444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.61  E-value=5.6e-06  Score=59.84  Aligned_cols=100  Identities=12%  Similarity=0.150  Sum_probs=55.1

Q ss_pred             ceEEeecCCcCCcccCC------CCCCccEEecccccccccCcccc-CCCCCCEEEeccCccccccccccccccccceec
Q 039599           72 PVTIDFTSCINLTDFPH------ISGNITRLYLDETAIEEVPSSIK-CLTNLKLLRINRCTRLKRVSTSICKLKSLIALS  144 (293)
Q Consensus        72 L~~L~l~~~~~~~~~~~------~~~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  144 (293)
                      +-.++++.|++ ..+++      ....|+..++++|.+..+|+.|. .++.++.|++++|.+. .+|.++..++.|+.|+
T Consensus        29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            33556666652 22221      12245555777777776666553 3446666666665533 3555566666666666


Q ss_pred             ccccccCCCCChhhhccccCCceecCCCcc
Q 039599          145 AYGCLNLERFPESLEKMEHLNQINLGRTTI  174 (293)
Q Consensus       145 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~  174 (293)
                      ++.|.+. ..|+.+..+.++-.|+..+|..
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            6666443 3344444455555665555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.53  E-value=0.00018  Score=55.62  Aligned_cols=83  Identities=18%  Similarity=0.154  Sum_probs=34.5

Q ss_pred             CCCCCCEEEeccCccccccccccccccccceecccccccCC--CCChhhhccccCCceecCCCcccccCC---Ccccccc
Q 039599          112 CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE--RFPESLEKMEHLNQINLGRTTITEQRP---SSFENVK  186 (293)
Q Consensus       112 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~  186 (293)
                      .++.|.+|.+.+|.++...|.--..+++|+.|.+.+|.+..  .+ +-+..+++|++|.+-+|.++..--   ..+..++
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp  140 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP  140 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecC
Confidence            34444444444444433333222233444444444443321  11 123444555555555554432111   1234555


Q ss_pred             cCceecCCC
Q 039599          187 GLETLGFSE  195 (293)
Q Consensus       187 ~L~~L~l~~  195 (293)
                      +|++|+...
T Consensus       141 ~l~~LDF~k  149 (233)
T KOG1644|consen  141 SLRTLDFQK  149 (233)
T ss_pred             cceEeehhh
Confidence            555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.91  E-value=0.00046  Score=55.46  Aligned_cols=87  Identities=22%  Similarity=0.313  Sum_probs=39.9

Q ss_pred             hhccccCCceecCCCcccccCCCcccccccCceecCCCC-----ccccccccCccccceecccCCCccCCCCcCCCCccC
Q 039599          158 LEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-----DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPL  232 (293)
Q Consensus       158 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-----~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l  232 (293)
                      ...+..|+.+++.+..++..  ..+-.+++|++|.+++|     ..+.....++++|+++++++|++..+..+.      
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~------  110 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR------  110 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc------
Confidence            33444455555555444221  12334455666666555     122222334456666666666554331111      


Q ss_pred             cccccCCccccceeecCCccCCc
Q 039599          233 SASLLSGLSLLYWLHLNNCALTS  255 (293)
Q Consensus       233 ~~~~~~~~~~L~~L~l~~n~i~~  255 (293)
                         .+..+++|..|++.+|..+.
T Consensus       111 ---pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  111 ---PLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             ---hhhhhcchhhhhcccCCccc
Confidence               13344555566666664443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.00018  Score=58.43  Aligned_cols=98  Identities=12%  Similarity=0.122  Sum_probs=70.1

Q ss_pred             CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC--hhhhccccCCcee
Q 039599           91 GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP--ESLEKMEHLNQIN  168 (293)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~  168 (293)
                      .+.++|+.-+++++.+. ....|+.|++|.++-|.+....|  +..+++|++|++..|.+. .+.  ..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence            35667777777776553 24578899999999887765433  668889999999998554 332  3467888999999


Q ss_pred             cCCCcccccCCC-----cccccccCceec
Q 039599          169 LGRTTITEQRPS-----SFENVKGLETLG  192 (293)
Q Consensus       169 l~~n~~~~~~~~-----~~~~~~~L~~L~  192 (293)
                      +..|.-.+..+.     .+.-+++|+.|+
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            998887665553     244567887775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.67  E-value=0.00045  Score=33.41  Aligned_cols=18  Identities=56%  Similarity=0.983  Sum_probs=8.8

Q ss_pred             CcEEeccCCcCCCCchhH
Q 039599          266 LEWLHLRGNNLEGLPASI  283 (293)
Q Consensus       266 L~~L~l~~n~l~~~p~~l  283 (293)
                      |++||+++|+++.+|+.+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            445555555555444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.00012  Score=59.49  Aligned_cols=77  Identities=25%  Similarity=0.267  Sum_probs=46.4

Q ss_pred             CccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCC--cccCCCCCCcEEeccCCcCCC-C--
Q 039599          205 NFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP--QEIGYLSSLEWLHLRGNNLEG-L--  279 (293)
Q Consensus       205 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~l~~-~--  279 (293)
                      +++.|+.|.++-|.++++..            +..|..|++|+|.-|.|.++.  ..+.++|+|+.|.|..|.-.+ -  
T Consensus        39 kMp~lEVLsLSvNkIssL~p------------l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP------------LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             hcccceeEEeeccccccchh------------HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccch
Confidence            34445555555566555522            346677777777777776643  235677777777777776543 1  


Q ss_pred             ---chhHhhcccCCCCC
Q 039599          280 ---PASIKQISRLESLD  293 (293)
Q Consensus       280 ---p~~l~~l~~L~~ld  293 (293)
                         -..+.-+|+|++||
T Consensus       107 nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  107 NYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHHHHHHHHcccchhcc
Confidence               12355577777765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.43  E-value=0.00034  Score=63.13  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=14.6

Q ss_pred             CCCCCEEEeccCccccc--cccccccccccceecccc
Q 039599          113 LTNLKLLRINRCTRLKR--VSTSICKLKSLIALSAYG  147 (293)
Q Consensus       113 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~  147 (293)
                      ++.|+.+.+.++.....  .......+++|++|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            34444454444432222  112233444555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.42  E-value=0.0013  Score=31.79  Aligned_cols=21  Identities=38%  Similarity=0.488  Sum_probs=16.1

Q ss_pred             ccceeecCCccCCcCCcccCC
Q 039599          242 LLYWLHLNNCALTSIPQEIGY  262 (293)
Q Consensus       242 ~L~~L~l~~n~i~~l~~~~~~  262 (293)
                      +|++|++++|.++.+|.+++.
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            478888888888888876554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.39  E-value=0.0023  Score=51.50  Aligned_cols=102  Identities=17%  Similarity=0.155  Sum_probs=65.3

Q ss_pred             ccccCceecCCCCc-cccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCC--ccc
Q 039599          184 NVKGLETLGFSELD-NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP--QEI  260 (293)
Q Consensus       184 ~~~~L~~L~l~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~--~~~  260 (293)
                      ....|+.+++...+ .-...+..+++|++|.++.|.......    +..    ....+|+|+++++++|+|..+.  ..+
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~----l~v----l~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGG----LEV----LAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCccccccc----cee----hhhhCCceeEEeecCCccccccccchh
Confidence            34556666655541 122245678899999999984332211    000    1335599999999999887622  125


Q ss_pred             CCCCCCcEEeccCCcCCCC----chhHhhcccCCCCC
Q 039599          261 GYLSSLEWLHLRGNNLEGL----PASIKQISRLESLD  293 (293)
Q Consensus       261 ~~~~~L~~L~l~~n~l~~~----p~~l~~l~~L~~ld  293 (293)
                      ..+++|..|++.+|..+.+    ...+.-+++|+++|
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            6688899999999987752    23355578888775

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.39  E-value=0.011  Score=42.85  Aligned_cols=14  Identities=14%  Similarity=0.188  Sum_probs=5.4

Q ss_pred             cccCCCCCCEEEec
Q 039599          109 SIKCLTNLKLLRIN  122 (293)
Q Consensus       109 ~~~~l~~L~~L~l~  122 (293)
                      +|.++.+|+.+.+.
T Consensus         7 ~F~~~~~l~~i~~~   20 (129)
T PF13306_consen    7 AFYNCSNLESITFP   20 (129)
T ss_dssp             TTTT-TT--EEEET
T ss_pred             HHhCCCCCCEEEEC
Confidence            34445555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.21  E-value=0.013  Score=42.62  Aligned_cols=61  Identities=13%  Similarity=0.071  Sum_probs=21.8

Q ss_pred             cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599          109 SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus       109 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      .|.++++++.+.+..+ ........+.+++.++.+.+..+ ....-...+..+++++.+.+..
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEEETT
T ss_pred             hccccccccccccccc-ccccceeeeeccccccccccccc-ccccccccccccccccccccCc
Confidence            3444555555555442 22211223344444555555331 1111122344455555555543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.14  E-value=0.0031  Score=28.28  Aligned_cols=16  Identities=44%  Similarity=0.634  Sum_probs=6.6

Q ss_pred             CCcEEeccCCcCCCCc
Q 039599          265 SLEWLHLRGNNLEGLP  280 (293)
Q Consensus       265 ~L~~L~l~~n~l~~~p  280 (293)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.46  E-value=0.00012  Score=65.51  Aligned_cols=178  Identities=22%  Similarity=0.238  Sum_probs=88.8

Q ss_pred             ccEEeccccccc-----ccCccccCCCCCCEEEeccCcccccccc----ccccc-cccceecccccccCC----CCChhh
Q 039599           93 ITRLYLDETAIE-----EVPSSIKCLTNLKLLRINRCTRLKRVST----SICKL-KSLIALSAYGCLNLE----RFPESL  158 (293)
Q Consensus        93 L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~----~~~~~~  158 (293)
                      +..+.+.+|.+.     .+-..+...++|..|++++|.+...-..    .+... +.+++|.+..|....    .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            444455555443     2223344555666666666655432111    11122 445556666654442    233444


Q ss_pred             hccccCCceecCCCcccc----cCCCc----ccccccCceecCCCC-------ccccccccCccc-cceecccCCCccCC
Q 039599          159 EKMEHLNQINLGRTTITE----QRPSS----FENVKGLETLGFSEL-------DNLSDNIGNFKS-FEYMGAHGSAISQL  222 (293)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~----~~~~~----~~~~~~L~~L~l~~~-------~~l~~~~~~l~~-L~~L~l~~~~~~~~  222 (293)
                      .....++.++++.|.+..    .++..    +....++++|.+.++       ..+...+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            455566666666665521    11111    223455666666655       122223334444 55566666666543


Q ss_pred             -C-CcCCCCccCcccccCCc-cccceeecCCccCCc-----CCcccCCCCCCcEEeccCCcCCC
Q 039599          223 -P-SLSSGLVPLSASLLSGL-SLLYWLHLNNCALTS-----IPQEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       223 -~-~l~~~l~~l~~~~~~~~-~~L~~L~l~~n~i~~-----l~~~~~~~~~L~~L~l~~n~l~~  278 (293)
                       - .+.+        .+..+ +.+++++++.|.|++     +...+..++.++.+.++.|++..
T Consensus       249 g~~~L~~--------~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLP--------CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHH--------HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence             0 0111        12333 566777777777765     33445566777777777777663

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.43  E-value=0.045  Score=27.38  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=15.3

Q ss_pred             CCCCcEEeccCCcCCCCchhH
Q 039599          263 LSSLEWLHLRGNNLEGLPASI  283 (293)
Q Consensus       263 ~~~L~~L~l~~n~l~~~p~~l  283 (293)
                      +++|+.|++++|+++.+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356788888888888777653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.43  E-value=0.045  Score=27.38  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=15.3

Q ss_pred             CCCCcEEeccCCcCCCCchhH
Q 039599          263 LSSLEWLHLRGNNLEGLPASI  283 (293)
Q Consensus       263 ~~~L~~L~l~~n~l~~~p~~l  283 (293)
                      +++|+.|++++|+++.+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356788888888888777653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.99  E-value=0.014  Score=52.52  Aligned_cols=35  Identities=23%  Similarity=0.312  Sum_probs=17.5

Q ss_pred             ccccceecccccccCCC--CChhhhccccCCceecCC
Q 039599          137 LKSLIALSAYGCLNLER--FPESLEKMEHLNQINLGR  171 (293)
Q Consensus       137 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~  171 (293)
                      .+.|+.+.+.++.....  +......++.|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            45555555555543332  223344555566666554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.77  E-value=0.00066  Score=60.80  Aligned_cols=158  Identities=19%  Similarity=0.146  Sum_probs=101.3

Q ss_pred             CCCEEEeccCccccccc----cccccccccceecccccccCCCC----Chhhhcc-ccCCceecCCCcccccCC----Cc
Q 039599          115 NLKLLRINRCTRLKRVS----TSICKLKSLIALSAYGCLNLERF----PESLEKM-EHLNQINLGRTTITEQRP----SS  181 (293)
Q Consensus       115 ~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~l-~~L~~L~l~~n~~~~~~~----~~  181 (293)
                      .+..+.+.+|.+.....    ..+...+.|+.|++++|.+...-    .+.+... ..+++|++..|.++....    +.
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            37778888887665433    34556788999999998776321    2222332 467888888888865433    33


Q ss_pred             ccccccCceecCCCCc-----------cccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccc-cceeecC
Q 039599          182 FENVKGLETLGFSELD-----------NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSL-LYWLHLN  249 (293)
Q Consensus       182 ~~~~~~L~~L~l~~~~-----------~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~-L~~L~l~  249 (293)
                      +.....++.+++..|.           .++..+....+++++++++|.++...     ...++. .+...+. +.++++.
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~-----c~~l~~-~l~~~~~~~~el~l~  241 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS-----CALLDE-VLASGESLLRELDLA  241 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH-----HHHHHH-HHhccchhhHHHHHH
Confidence            4557788888888871           11222335778899999988876431     111111 1223333 6679999


Q ss_pred             CccCCc-----CCcccCCC-CCCcEEeccCCcCCC
Q 039599          250 NCALTS-----IPQEIGYL-SSLEWLHLRGNNLEG  278 (293)
Q Consensus       250 ~n~i~~-----l~~~~~~~-~~L~~L~l~~n~l~~  278 (293)
                      .|.+.+     +...+..+ +.++.++++.|.+++
T Consensus       242 ~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  242 SNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             hcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence            998875     33345556 778999999999985

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.62  E-value=0.03  Score=43.66  Aligned_cols=34  Identities=15%  Similarity=0.228  Sum_probs=15.2

Q ss_pred             CCEEEeccCccccccccccccccccceecccccc
Q 039599          116 LKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL  149 (293)
Q Consensus       116 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  149 (293)
                      ++.++.+++.+..+--+.+.+++.++.|.+.+|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            3444444444433333334444455555555543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.85  E-value=0.16  Score=25.42  Aligned_cols=18  Identities=39%  Similarity=0.577  Sum_probs=14.2

Q ss_pred             CCCcEEeccCCcCCCCch
Q 039599          264 SSLEWLHLRGNNLEGLPA  281 (293)
Q Consensus       264 ~~L~~L~l~~n~l~~~p~  281 (293)
                      ++|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            467888888888888876

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.35  E-value=0.16  Score=24.79  Aligned_cols=14  Identities=36%  Similarity=0.506  Sum_probs=6.9

Q ss_pred             CCCcEEeccCCcCC
Q 039599          264 SSLEWLHLRGNNLE  277 (293)
Q Consensus       264 ~~L~~L~l~~n~l~  277 (293)
                      ++|+.|++++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45566666666554

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.19  E-value=0.041  Score=43.98  Aligned_cols=84  Identities=11%  Similarity=0.124  Sum_probs=46.4

Q ss_pred             ccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCc
Q 039599          110 IKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLE  189 (293)
Q Consensus       110 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  189 (293)
                      +..+...+.||++.|.. ......++.++.+..++++.|+ ...+|+.+.+...+..++...|.. +..|.++.+.++++
T Consensus        38 i~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccch-hhCCccccccCCcc
Confidence            44445555666665442 2233444555566666666552 234555566666666666665555 45566666666666


Q ss_pred             eecCCCC
Q 039599          190 TLGFSEL  196 (293)
Q Consensus       190 ~L~l~~~  196 (293)
                      +++.-++
T Consensus       115 ~~e~k~~  121 (326)
T KOG0473|consen  115 KNEQKKT  121 (326)
T ss_pred             hhhhccC
Confidence            6666555

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.51  E-value=0.98  Score=22.64  Aligned_cols=17  Identities=35%  Similarity=0.534  Sum_probs=12.6

Q ss_pred             CCCCcEEeccCCcCCCC
Q 039599          263 LSSLEWLHLRGNNLEGL  279 (293)
Q Consensus       263 ~~~L~~L~l~~n~l~~~  279 (293)
                      +.+|+.|++++|+|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            35788888888888753

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.81  E-value=0.064  Score=42.91  Aligned_cols=67  Identities=15%  Similarity=0.215  Sum_probs=35.1

Q ss_pred             hhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCC
Q 039599          156 ESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLP  223 (293)
Q Consensus       156 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~  223 (293)
                      ..+....+.+.||++.|.+ -.+...|+.++.+..|+++.+  ..+|..+.....++.+....|..+..|
T Consensus        36 ~ei~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p  104 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP  104 (326)
T ss_pred             hhhhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC
Confidence            3455556666777776665 234445555566666666555  334444444444444444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 2e-25
 Identities = 46/226 (20%), Positives = 81/226 (35%), Gaps = 12/226 (5%)

Query: 74  TIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTS 133
            + F     L  +  +     R Y  +              N ++        LK  +  
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE-TRTGRALKATADL 74

Query: 134 I--CKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETL 191
           +        +AL       L +FP+   ++ HL  + +    + E  P + +   GLETL
Sbjct: 75  LEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETL 132

Query: 192 GFSE--LDNLSDNIGNFKSFEYMGAHG-SAISQLP-SLSSGLVPLSASLLSGLSLLYWLH 247
             +   L  L  +I +      +       +++LP  L+S         L  L     L 
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ---SLR 189

Query: 248 LNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
           L    + S+P  I  L +L+ L +R + L  L  +I  + +LE LD
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 4e-25
 Identities = 56/295 (18%), Positives = 107/295 (36%), Gaps = 39/295 (13%)

Query: 10  LNLSTIKGINLNLRAFSNMSNLRVLKFYIPE-ISVHMSIEEQLLDSKGCKILRSFPSNLH 68
           L       +       S                    +     ++++  + L++    L 
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76

Query: 69  FVSP---VTIDFTSCINLTDFPHISGNIT---RLYLDETAIEEVPSSIKCLTNLKLLRIN 122
             +    V ++  S   L  FP  +  ++    + +D   + E+P +++    L+ L + 
Sbjct: 77  DATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLA 135

Query: 123 RCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSF 182
           R   L+ +  SI  L  L  LS   C  L   PE L   +                    
Sbjct: 136 RN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDA---------------SGEH 179

Query: 183 ENVKGLETL--GFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGL 240
           + +  L++L   ++ + +L  +I N ++ + +    S +S L              +  L
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-----------IHHL 228

Query: 241 SLLYWLHLNNC-ALTSIPQEIGYLSSLEWLHLRG-NNLEGLPASIKQISRLESLD 293
             L  L L  C AL + P   G  + L+ L L+  +NL  LP  I ++++LE LD
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.1 bits (201), Expect = 8e-18
 Identities = 39/202 (19%), Positives = 73/202 (36%), Gaps = 25/202 (12%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICK---------LKSLIA 142
            +  L L    +  +P+SI  L  L+ L I  C  L  +   +           L +L +
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 143 LSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETL---GFSELDNL 199
           L       +   P S+  +++L  + +  + ++     +  ++  LE L   G + L N 
Sbjct: 188 LRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNY 245

Query: 200 SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCA-LTSIPQ 258
               G     + +       S L +L     PL    +  L+ L  L L  C  L+ +P 
Sbjct: 246 PPIFGGRAPLKRLILKDC--SNLLTL-----PLD---IHRLTQLEKLDLRGCVNLSRLPS 295

Query: 259 EIGYLSSLEWLHLRGNNLEGLP 280
            I  L +   + +  +    L 
Sbjct: 296 LIAQLPANCIILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 27/186 (14%), Positives = 49/186 (26%), Gaps = 13/186 (6%)

Query: 109 SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQIN 168
                +  + L     T L+     + + +           +  R   S           
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 169 LGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSG 228
             + T      ++      LE L    L    D        ++M    + + +LP     
Sbjct: 67  ALKATADLLEDATQPGRVALE-LRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP----- 120

Query: 229 LVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNN-LEGLPASIKQIS 287
                   +   + L  L L    L ++P  I  L+ L  L +R    L  LP  +    
Sbjct: 121 ------DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 288 RLESLD 293
                 
Sbjct: 175 ASGEHQ 180

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 26/167 (15%), Positives = 48/167 (28%), Gaps = 14/167 (8%)

Query: 50  QLLDSKGCKILRSFPSNLHFVSPVTIDFT---------SCINLTDFPHISGNITRL---Y 97
           + L  + C  L   P  L                        +   P    N+  L    
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212

Query: 98  LDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPES 157
           +  + +  +  +I  L  L+ L +  CT L+           L  L    C NL   P  
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 158 LEKMEHLNQINLGRTTITEQRPSSFENVKGLETL--GFSELDNLSDN 202
           + ++  L +++L       + PS    +     +         L  +
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.8 bits (194), Expect = 1e-16
 Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 30/204 (14%)

Query: 82  NLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLI 141
            LT  P +   +  L + +  +  +P+    L  L         +L  +      L+ L 
Sbjct: 132 QLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAY----NNQLTSLPMLPSGLQELS 187

Query: 142 ALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSD 201
                    L   P    ++  L   N   T++    P+    +K L  +  + L +L  
Sbjct: 188 VSD----NQLASLPTLPSELYKLWAYNNRLTSL----PALPSGLKEL-IVSGNRLTSLPV 238

Query: 202 NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIG 261
                K        G+ ++ LP L SGL+               L +    LT +P+ + 
Sbjct: 239 LPSELKELM---VSGNRLTSLPMLPSGLL--------------SLSVYRNQLTRLPESLI 281

Query: 262 YLSSLEWLHLRGNNLEGLPASIKQ 285
           +LSS   ++L GN L        +
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALR 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.4 bits (180), Expect = 8e-15
 Identities = 42/225 (18%), Positives = 75/225 (33%), Gaps = 41/225 (18%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
               L + E+ +  +P  +    ++  L I     L  +     +L++L          L
Sbjct: 41  GNAVLNVGESGLTTLPDCL--PAHITTLVIPDN-NLTSLPALPPELRTLEV----SGNQL 93

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEY 211
              P     +  L+  +   T +    P+    +  L  +  ++L +L       +    
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHL----PALPSGLCKL-WIFGNQLTSLPVLPPGLQELSV 148

Query: 212 MGAHGSAISQLPSLSSGLVPLSAS------LLSGLSLLYWLHLNNCALTSIPQEIGYL-- 263
                + ++ LP+L S L  L A       L    S L  L +++  L S+P     L  
Sbjct: 149 ---SDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYK 205

Query: 264 ---------------SSLEWLHLRGNNLEGLPASIKQISRLESLD 293
                          S L+ L + GN L  LP      S L+ L 
Sbjct: 206 LWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELM 247

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 240 LSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLE 290
            +    L++    LT++P  +   + +  L +  NNL  LPA   ++  LE
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLE 87

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 39/300 (13%), Positives = 88/300 (29%), Gaps = 46/300 (15%)

Query: 24  AFSNMSNLRVL-----KFYIPEI-----SVHMSIEEQLLDSKGCKILRSFPS---NLHFV 70
           A   ++ L VL        + E       +  ++ ++          ++F        F 
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

Query: 71  SPVTIDFTSCINLTDFPHISGN---ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRL 127
             +     S          S      T++      I  V  ++  LT L+   +     +
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219

Query: 128 KRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKG 187
                   + ++            +      + ++ L  + +       + P+  + +  
Sbjct: 220 AENICEAWENENSEYAQ-----QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 188 LETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLP-------------SLSSGLVPLSA 234
           ++ +      N++ N     S E +     A++  P             +L +  V  S 
Sbjct: 275 MQLI------NVACN--RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS- 325

Query: 235 SLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASI-KQISRLESLD 293
             L  +  L  L      L       G    L  L+L  N +  +PA+      ++E+L 
Sbjct: 326 --LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 36/224 (16%), Positives = 74/224 (33%), Gaps = 30/224 (13%)

Query: 92  NITRLYLDETAIEEVPS--SIKCLTNLKLLRINR-------CTRLKRVSTSICKLKSLIA 142
            +  L      ++ +P+    K ++ +  +  +              +  +  K  ++ +
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 143 LSAYGCLNLERFP-ESLEKMEHLNQINLGRTTITE-------QRPSSFENVKGLETLGFS 194
           ++      + +FP E       L+ INL    +TE           +F+N   L ++   
Sbjct: 438 INLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 195 E--LDNLSDNI--GNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL-N 249
              L  LSD+           +    ++ S+ P+          S L G  +        
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS-----STLKGFGIRNQRDAQG 551

Query: 250 NCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
           N  L   P+ I    SL  L +  N++  +   I     +  LD
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLD 593

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 24/201 (11%), Positives = 59/201 (29%), Gaps = 39/201 (19%)

Query: 92  NITRLYLDETAIEEVP-SSIKCLTNLKLLRINRC-------TRLKRVSTSICKLKSLIAL 143
           N++ + L    I + P       + L  + +            LK  + +      L ++
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

Query: 144 SAYGCLNLERFPESLE--KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSD 201
                  L +  +      + +L  I+L   + ++  P+   N   L+  G     +   
Sbjct: 494 DLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQG 551

Query: 202 NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIG 261
           N                            P     ++    L  L + +  +  + ++I 
Sbjct: 552 N--RT--------------------LREWPEG---ITLCPSLTQLQIGSNDIRKVNEKI- 585

Query: 262 YLSSLEWLHLRGNNLEGLPAS 282
              ++  L ++ N    +  S
Sbjct: 586 -TPNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 12/143 (8%)

Query: 157 SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHG 216
           SL     +  ++L     + + P +   +  LE L       L  +        +     
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL------ALGSHGEKVNERLFGPKGI 129

Query: 217 SAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS------IPQEIGYLSSLEWLH 270
           SA           +    + +       +  L    + S      I +          + 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 271 LRGNNLEGLPASIKQISRLESLD 293
              NN+  +  ++ ++++L    
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFY 212

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 19/189 (10%), Positives = 43/189 (22%), Gaps = 34/189 (17%)

Query: 109 SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYG----CLNLERFPESLEKMEHL 164
           S+     +  L +       RV  +I +L  L  L+              P+ +      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 165 NQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPS 224
            Q    R    +                  +  +L  +                I+  P 
Sbjct: 136 EQKQKMRMHYQKTFVDY---------DPREDFSDLIKDC---------------INSDPQ 171

Query: 225 LSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGL-PASI 283
             S                  +   +  +T + + +  L+ L   ++  +          
Sbjct: 172 QKS-----IKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 284 KQISRLESL 292
            +    E  
Sbjct: 227 WENENSEYA 235

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 5e-14
 Identities = 36/239 (15%), Positives = 70/239 (29%), Gaps = 37/239 (15%)

Query: 82  NLTDFPHISG--NITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRV--STSICK 136
            +           +T L LD   IEE+P         ++ L  +   +LK +    +   
Sbjct: 584 KVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKS 642

Query: 137 LKSLIALSAYGCLNLERFPESLE------KMEHLNQINLGRTTITEQRPSSFENVKGLET 190
           +  + ++       +     ++       K  + + + L    I +     F     + T
Sbjct: 643 VYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 191 LGFSELDNLSDNIGNFKSF--EYMGAHGSAISQLPSLSS------GLVPLSASL-LSGLS 241
           +       LS+N     S     +            L++       L  LS     + L 
Sbjct: 702 I------ILSNN--LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753

Query: 242 LLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGN-------NLEGLPASIKQISRLESLD 293
            L  + ++    +S P +    S L+   +R          L   P  I     L  L 
Sbjct: 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 38/219 (17%), Positives = 70/219 (31%), Gaps = 19/219 (8%)

Query: 90  SGNITRLYLDETAIE-EVPSSIKCLTNLKLLRI--NRCTRLKRVSTSICKLKSLIALSAY 146
           +G +T L L     +  VP +I  LT LK+L    +  T   R+         +     +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 147 GCLNL--ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDN----LS 200
                  + F +  +++   + +        E +P   ++   L+      L N    +S
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS 441

Query: 201 DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL---------LSGLSLLYWLHLNNC 251
             I      + +    S  +            S             S L  L  + L NC
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 252 A-LTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRL 289
             +T +P  +  L  L+ L++  N            +RL
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 40/309 (12%), Positives = 90/309 (29%), Gaps = 79/309 (25%)

Query: 10  LNLSTIKGINLNL----RAFSNMSNLRVLKFYIPEIS-VHMSIEEQLLDSKGCKILRSFP 64
           L  + I  +   +    +A   ++ L+++ F     +  +++++ +  +S   K   +  
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484

Query: 65  SNLHFVSPVTIDFTSCINLTDFPHISGNITRLYL-DETAIEEVPSSIKCLTNLKLLRINR 123
            +               NL        ++T + L +   + ++P  +  L  L+ L I  
Sbjct: 485 LSWS-------------NLK-------DLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524

Query: 124 ---------CTRLKRVSTSICKLKSLIALSAYGCLNLERFPES--LEKMEHLNQINLGRT 172
                         R++        +         NLE FP S  L+KM  L  ++    
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN 583

Query: 173 TITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPL 232
            +      +F     L  L       L  N                I ++P         
Sbjct: 584 KVRH--LEAFGTNVKLTDL------KLDYN---------------QIEEIPE-------- 612

Query: 233 SASLLSGLSLLYWLHLNNCALTSIPQ--EIGYLSSLEWLHLRGNNLEGLPASI------K 284
                +    +  L  ++  L  IP       +  +  +    N +     +I       
Sbjct: 613 --DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 285 QISRLESLD 293
           +     ++ 
Sbjct: 671 KGINASTVT 679

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 35/299 (11%), Positives = 78/299 (26%), Gaps = 72/299 (24%)

Query: 5   IESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFP 64
           ++    N    K       ++SN+ +L  ++ Y                   C  +   P
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELY------------------NCPNMTQLP 508

Query: 65  SNLHFVSPVTIDFTSCINLTDFPHISGN-ITRLYLDETAIEEVPSSIKCLTNLKLLRINR 123
                             L    +I+ N        +     +         +++  +  
Sbjct: 509 D----------FLYDLPELQSL-NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 124 CTRLKRV--STSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSS 181
              L+    S S+ K+  L  L      N  R  E+      L  + L    I E     
Sbjct: 558 N-NLEEFPASASLQKMVKLGLLDCVH--NKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF 614

Query: 182 FENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLS 241
                 +E L        S N                +  +P++ +            + 
Sbjct: 615 CAFTDQVEGL------GFSHN---------------KLKYIPNIFN---------AKSVY 644

Query: 242 LLYWLHLNNCALTSIPQEIG------YLSSLEWLHLRGNNLEGLPASI-KQISRLESLD 293
           ++  +  +   + S  + I          +   + L  N ++  P  +    S + ++ 
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 8e-08
 Identities = 20/199 (10%), Positives = 55/199 (27%), Gaps = 39/199 (19%)

Query: 92  NITRLYLDETAIEEVPSSI-KCLTNLKLLRINRC-------TRLKRVSTSICKLKSLIAL 143
           N + + L    I++ P+ +    + +  + ++           LK    +      L  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 144 SAYGCLNLERFPESLE--KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSD 201
                  L    +      + +L+ +++     +   P+   N   L+  G     +   
Sbjct: 734 DLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEG 791

Query: 202 NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIG 261
           N                            P     ++    L  L + +  +  + +++ 
Sbjct: 792 N----------------------RILRQWPTG---ITTCPSLIQLQIGSNDIRKVDEKL- 825

Query: 262 YLSSLEWLHLRGNNLEGLP 280
               L  L +  N    + 
Sbjct: 826 -TPQLYILDIADNPNISID 843

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.8 bits (173), Expect = 6e-14
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 24/216 (11%)

Query: 79  SCINLTDFP-HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKL 137
           + +NL+  P ++   IT L + + A+  +P     L  L         RL  +      L
Sbjct: 67  NRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDAC----DNRLSTLPELPASL 122

Query: 138 KSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELD 197
           K L   +      L   PE    +E++N        +T   P    +++ L ++  ++L 
Sbjct: 123 KHLDVDNN----QLTMLPELPALLEYIN---ADNNQLTM-LPELPTSLEVL-SVRNNQLT 173

Query: 198 NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP 257
            L +   + ++ +      + +  LP++                   +       +T IP
Sbjct: 174 FLPELPESLEALD---VSTNLLESLPAVPVRNHHS-------EETEIFFRCRENRITHIP 223

Query: 258 QEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
           + I  L     + L  N L             +   
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.8 bits (168), Expect = 3e-13
 Identities = 36/212 (16%), Positives = 69/212 (32%), Gaps = 45/212 (21%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
             + L L+   +  +P ++     + +L I +   L  +      L+ L A        L
Sbjct: 60  QFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLPELPASLEYLDACD----NRL 112

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEY 211
              PE    ++HL+                         +  ++L  L +        EY
Sbjct: 113 STLPELPASLKHLD-------------------------VDNNQLTMLPELPAL---LEY 144

Query: 212 MGAHGSAISQLPSLSSGLVPLSAS------LLSGLSLLYWLHLNNCALTSIPQEIGYLSS 265
           + A  + ++ LP L + L  LS        L      L  L ++   L S+P        
Sbjct: 145 INADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHH 204

Query: 266 LE----WLHLRGNNLEGLPASIKQISRLESLD 293
            E    +   R N +  +P +I  +    ++ 
Sbjct: 205 SEETEIFFRCRENRITHIPENILSLDPTCTII 236

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 24/209 (11%), Positives = 53/209 (25%), Gaps = 41/209 (19%)

Query: 82  NLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLI 141
            L+  P +  ++  L +D   +  +P     L  +         +L  +      L+ L 
Sbjct: 111 RLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINA----DNNQLTMLPELPTSLEVLS 166

Query: 142 ALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSD 201
                    L   PE  E +E L+       ++    P+        E           +
Sbjct: 167 V----RNNQLTFLPELPESLEALDVSTNLLESL----PAVPVRNHHSEETEIFF--RCRE 216

Query: 202 NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP-QEI 260
           N                  ++  +   +          L     + L +  L+S   + +
Sbjct: 217 N------------------RITHIPENI--------LSLDPTCTIILEDNPLSSRIRESL 250

Query: 261 GYLSSLEWLHLRGNNLEGLPASIKQISRL 289
              ++    H               + R 
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 48/304 (15%), Positives = 103/304 (33%), Gaps = 38/304 (12%)

Query: 10  LNLSTIKGINLNLRAFSNMSNLRVLKF------YIPEISVHMSIEEQLLDSKGCKILRSF 63
             L+     + ++  F  ++N+  +        Y+ ++  H   +   L    C++ +  
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS--LSIIRCQLKQFP 323

Query: 64  PSNLHFVSPVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPS---SIKCLTNLKLL 119
             +L F+   ++  T       F  ++  +++ L L   A+        S     +L+ L
Sbjct: 324 TLDLPFL--KSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 120 RINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPE--SLEKMEHLNQINLGRTTITEQ 177
            ++       +S +   L+ L  L       L+R  E  +   +E L  +++  T     
Sbjct: 382 DLSFN-GAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 178 RPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSL------SSGLVP 231
               F  +  L TL       ++ N  +FK         +  +   +L         L  
Sbjct: 440 FDGIFLGLTSLNTL------KMAGN--SFKDNT----LSNVFANTTNLTFLDLSKCQLEQ 487

Query: 232 LSASLLSGLSLLYWLHLNNCALTSIPQE-IGYLSSLEWLHLRGNNLEGLPASI-KQISRL 289
           +S  +   L  L  L++++  L  +       L SL  L    N +E     +      L
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547

Query: 290 ESLD 293
              +
Sbjct: 548 AFFN 551

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 55/320 (17%), Positives = 94/320 (29%), Gaps = 58/320 (18%)

Query: 10  LNLST--IKGINLNLRAFSNMSNLRVLKFYIPEISV----------HMSIEEQLLDSKGC 57
           LN++   I    L    FSN++NL  +      I                    LD    
Sbjct: 133 LNVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 58  KILRSFPSNLHFVSPVTIDFTSCINLTDFP----------HISGNITRLYLDETAIEEVP 107
            I          +    +      N ++            H+   I   + DE  +E   
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 108 SSIK---CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHL 164
            SI    C   +   R+               L ++ A+S  G     ++ E + K    
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG--VSIKYLEDVPKHFKW 309

Query: 165 NQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPS 224
             +++ R  + +        +K L          L+ N          G+       LPS
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKSL---------TLTMN---------KGSISFKKVALPS 351

Query: 225 LS---------SGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNN 275
           LS         S     S S L   SL + L L+      +      L  L+ L  + + 
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRH-LDLSFNGAIIMSANFMGLEELQHLDFQHST 410

Query: 276 LEGLPA--SIKQISRLESLD 293
           L+ +    +   + +L  LD
Sbjct: 411 LKRVTEFSAFLSLEKLLYLD 430

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 34/226 (15%), Positives = 72/226 (31%), Gaps = 60/226 (26%)

Query: 62  SFPSNLHFVSPVTIDFTSCINLTDFP-HISGNITRLYLDETAIEEVP-SSIKCLTNLKLL 119
           S    +  V  +T        L+  P  I  +   + L    ++ +   S    + L+ L
Sbjct: 3   SLNPCIEVVPNITYQCMDQ-KLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWL 61

Query: 120 RINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRP 179
            ++RC           +++++               ++   + HL+ + L    I    P
Sbjct: 62  DLSRC-----------EIETIE-------------DKAWHGLHHLSNLILTGNPIQSFSP 97

Query: 180 SSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSG 239
            SF  +  LE L         +                       L+S    L +  +  
Sbjct: 98  GSFSGLTSLENL------VAVET---------------------KLAS----LESFPIGQ 126

Query: 240 LSLLYWLHLNNCALTSI--PQEIGYLSSLEWLHLRGNNLEGLPASI 283
           L  L  L++ +  + S   P     L++L  + L  N ++ +  + 
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 42/220 (19%), Positives = 76/220 (34%), Gaps = 25/220 (11%)

Query: 79  SCINLTDFPHISG--NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICK 136
               L + P +     +T +Y D  +++++P     L ++     N    L      +  
Sbjct: 181 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN-NILEEL----PELQN 235

Query: 137 LKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL 196
           L  L  + A     L+  P+    +E LN  +   T +    P   +++  L+       
Sbjct: 236 LPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDL----PELPQSLTFLDVSENI-F 289

Query: 197 DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSAS------LLSGLSLLYWLHLNN 250
             LS+   N        A  + I  L  L   L  L+ S      L +    L  L  + 
Sbjct: 290 SGLSELPPNLYYLN---ASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASF 346

Query: 251 CALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLE 290
             L  +P+      +L+ LH+  N L   P   + +  L 
Sbjct: 347 NHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 38/235 (16%), Positives = 81/235 (34%), Gaps = 36/235 (15%)

Query: 79  SCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTS----- 133
           + + L+  P +  ++  L     ++ E+P   + L +L +   N    L  +        
Sbjct: 79  NNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDN-NNLKALSDLPPLLEYLG 137

Query: 134 -----------ICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSF 182
                      +     L  +      +L++ P+    +E +     G   + E      
Sbjct: 138 VSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIA---AGNNQLEE--LPEL 191

Query: 183 ENVKGLETLGFSE--LDNLSDNIGNFKSFEYMGAHGSAISQLPSLS--SGLVPLSAS--- 235
           +N+  L  +      L  L D   + +S     A  + + +LP L     L  + A    
Sbjct: 192 QNLPFLTAIYADNNSLKKLPDLPLSLESIV---AGNNILEELPELQNLPFLTTIYADNNL 248

Query: 236 ---LLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQIS 287
              L      L  L++ +  LT +P+    L+ L+      + L  LP ++  ++
Sbjct: 249 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 303

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 31/198 (15%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
            +       + + E+P   + + +            +       + + +       CL+ 
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEY 211
                        +++ L    ++   P    +++ L     + L  L +   + KS   
Sbjct: 72  -----------QAHELELNNLGLSSL-PELPPHLESL-VASCNSLTELPELPQSLKSLLV 118

Query: 212 MGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL 271
              +  A+S LP                  LL +L ++N  L  +P E+   S L+ + +
Sbjct: 119 DNNNLKALSDLP-----------------PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160

Query: 272 RGNNLEGLPASIKQISRL 289
             N+L+ LP     +  +
Sbjct: 161 DNNSLKKLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 31/217 (14%), Positives = 69/217 (31%), Gaps = 24/217 (11%)

Query: 82  NLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLI 141
            L   P +  ++  L + +  + ++P   + LT L +   N  + L  +  ++  L +  
Sbjct: 248 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE-NIFSGLSELPPNLYYLNAS- 305

Query: 142 ALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSD 201
                    +    +    +E LN   +    + E  P+    ++ L    F+ L  + +
Sbjct: 306 ------SNEIRSLCDLPPSLEELN---VSNNKLIE-LPALPPRLERL-IASFNHLAEVPE 354

Query: 202 NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSA-----SLLSGLSLLYWLHLNNCALTSI 256
              N K         + + + P +   +  L        +      L  LH+    L   
Sbjct: 355 LPQNLKQLH---VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411

Query: 257 PQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
           P       S+E L +    +        + +     D
Sbjct: 412 PDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDD 445

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 23/227 (10%)

Query: 82  NLTDFPHISG--NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKS 139
           N++D   ++    +  L L         S +  +T L  L +    ++K V+  I  L  
Sbjct: 121 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVT-PIANLTD 178

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS--ELD 197
           L +LS     N       L  +  L+        IT+   +   N+  L +L     ++ 
Sbjct: 179 LYSLSLNY--NQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKIT 234

Query: 198 NLSDNIGNFKSFEYMGAHGSAISQLPSLS--SGLVPLSAS--------LLSGLSLLYWLH 247
           +LS  + N     ++    + IS + ++   + L  L+          +L+ LS L  L 
Sbjct: 235 DLS-PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLF 293

Query: 248 LNNCALTSI-PQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
           LNN  L +   + IG L++L  L L  N++  +   +  +S+++S D
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSAD 339

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 35/202 (17%), Positives = 74/202 (36%), Gaps = 23/202 (11%)

Query: 94  TRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLER 153
             L      I ++      L       + +   +  V T   +L+S+  L   G   +  
Sbjct: 3   ATLATLPAPINQI-FPDADLAEGIRAVLQKA-SVTDVVT-QEELESITKLVVAGE-KVAS 58

Query: 154 FPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS--ELDNLSDNIGNFKSFEY 211
               +E + +L  +NL    IT+   S   N+  L  L     ++ ++S  + N  +   
Sbjct: 59  IQG-IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114

Query: 212 MGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL 271
           +  +   IS +  L+             L+ +Y L+L      S    +  ++ L +L +
Sbjct: 115 LYLNEDNISDISPLA------------NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 272 RGNNLEGLPASIKQISRLESLD 293
             + ++ +   I  ++ L SL 
Sbjct: 163 TESKVKDVTP-IANLTDLYSLS 183

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 25/206 (12%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
            +  L L    + E    ++ L+ L+ L +N    +      +    S+  L A    N+
Sbjct: 59  KLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YV----QELLVGPSIETLHAANN-NI 111

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS--ELDNLSDN--IGNFK 207
            R   S    +    I L    IT  R         ++ L     E+D ++      +  
Sbjct: 112 SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 208 SFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLE 267
           + E++    + I  +                  + L  L L++  L  +  E    + + 
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV------------FAKLKTLDLSSNKLAFMGPEFQSAAGVT 217

Query: 268 WLHLRGNNLEGLPASIKQISRLESLD 293
           W+ LR N L  +  +++    LE  D
Sbjct: 218 WISLRNNKLVLIEKALRFSQNLEHFD 243

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 27/145 (18%)

Query: 155 PESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGA 214
            E  +         +  +++ +   S  ++   ++ L      +LS N            
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKEL------DLSGN--PLSQIS---- 50

Query: 215 HGSAISQLPSLSS------GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEW 268
             + ++    L         L       L  LS L  L LNN  +  +        S+E 
Sbjct: 51  -AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIET 103

Query: 269 LHLRGNNLEGLPASIKQISRLESLD 293
           LH   NN+  +  S  Q    +++ 
Sbjct: 104 LHAANNNISRVSCSRGQ--GKKNIY 126

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 39/226 (17%), Positives = 71/226 (31%), Gaps = 26/226 (11%)

Query: 82  NLTDFP-HISGNITRLYLDETAIEEV-PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKS 139
           N    P ++  +   L L    +  +   S      L++L ++RC        +   L  
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNL 199
           L  L   G         +   +  L ++    T +         ++K L+ L      N+
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL------NV 131

Query: 200 SDNIGNFKSFEYMGAHGSAISQLPSLS---------SGLVPLSASLLSGLSLLY-WLHLN 249
           + N    +SF+         S L +L            +      +L  + LL   L L+
Sbjct: 132 AHN--LIQSFKL----PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 250 NCALTSIPQEIGYLSSLEWLHLRGNNLEG--LPASIKQISRLESLD 293
              +  I         L  L LR N      +   I+ ++ LE   
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 50/297 (16%), Positives = 98/297 (32%), Gaps = 47/297 (15%)

Query: 10  LNLSTIKGINLNL-RAFSNMSNLRVLKFY------IPEISVHMSIEEQLLDSKGCKILRS 62
             L+ +     ++   F+ ++N+            + + S +   +   L+   CK  + 
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH--LELVNCKFGQF 319

Query: 63  FPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDE---TAIEEVPSSIKCLTNLKLL 119
               L  +  +T       N      +  ++  L L     +       S    T+LK L
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 120 RINRCTRLKRVSTSICKLKSLIALSAYGC-LNLERFPESLEKMEHLNQINLGRTTITEQR 178
            ++    +  +S++   L+ L  L      L           + +L  +++  T      
Sbjct: 379 DLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 179 PSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLS 238
              F  +  LE L       ++ N                     S     +P    + +
Sbjct: 438 NGIFNGLSSLEVL------KMAGN---------------------SFQENFLP---DIFT 467

Query: 239 GLSLLYWLHLNNCALTSI-PQEIGYLSSLEWLHLRGNNLEGL-PASIKQISRLESLD 293
            L  L +L L+ C L  + P     LSSL+ L++  NN   L     K ++ L+ LD
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 47/314 (14%), Positives = 93/314 (29%), Gaps = 43/314 (13%)

Query: 9   FLNLST--IKGINLNLRAFSNMSNLRVLKF------YIPEIS----VHMSIEEQLLDSKG 56
            LN++   I+   L    FSN++NL  L         I          M +    LD   
Sbjct: 128 ELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 57  CKILRSFPSNLHFVSPVTIDFTSC-INLTDFPHISGNITRLYLDETAIEEVPSSIKCLTN 115
             +    P     +    +   +   +L         +  L +       V    +   N
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV----HRLVLGEFRNEGN 242

Query: 116 LKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTIT 175
           L+    +    L  ++    +L  L          L+   +    + +++  +L   TI 
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYL-------DYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 176 EQRPSSFENVKGLETLGFSELDN---LSDNIGNFKSFEYMGAHGSAISQLPSLSS----- 227
             +  S+    G + L           +  + + K   +    G        L S     
Sbjct: 296 RVKDFSYNF--GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 228 ------GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGL-- 279
                       +    G + L +L L+   + ++      L  LE L  + +NL+ +  
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 280 PASIKQISRLESLD 293
            +    +  L  LD
Sbjct: 414 FSVFLSLRNLIYLD 427

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 51/320 (15%), Positives = 94/320 (29%), Gaps = 76/320 (23%)

Query: 9   FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLH 68
            L+LS     +L   +F +   L+VL                               +L 
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVL-------------------------------DLS 60

Query: 69  FVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEV-PSSIKCLTNLKLLRINRCTRL 127
                TI+  +  +L+       +++ L L    I+ +   +   L++L+ L        
Sbjct: 61  RCEIQTIEDGAYQSLS-------HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 128 KRVSTSICKLKSLIALS-AYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVK 186
              +  I  LK+L  L+ A+  +   + PE    + +L  ++L    I     +    + 
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 187 GLETLGFSELDNLSDN--------------------IGNFKSFEYMGAHGSAISQLPSLS 226
            +  L  S   +LS N                      NF S   M      ++ L    
Sbjct: 174 QMPLLNLS--LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 227 ---------SGLVPLSASLLSGLSLLYWLHL----NNCALTSIPQEIGYLSSLEWLHLRG 273
                      L     S L GL  L          +  L  I      L+++    L  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 274 NNLEGLPASIKQISRLESLD 293
             +E +          + L+
Sbjct: 292 VTIERVK-DFSYNFGWQHLE 310

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 48/222 (21%)

Query: 82  NLTDFPH-ISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSICKLKS 139
            L++ P  I  N   L L E  I+ + +   + L +L++L++ R   ++++         
Sbjct: 65  GLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIE-------- 115

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNL 199
                            +   +  LN + L    +T     +FE +  L  L       L
Sbjct: 116 ---------------VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL------WL 154

Query: 200 SDNIGNFKSFEYMGAHGSAISQLPSLSS-------GLVPLSASLLSGLSLLYWLHLNNCA 252
            +N    +S         A +++PSL          L  +S     GL  L +L+L  C 
Sbjct: 155 RNN--PIESI-----PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 253 LTSIPQEIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD 293
           +  +P  +  L  LE L + GN+   +   S   +S L+ L 
Sbjct: 208 IKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 57/289 (19%), Positives = 96/289 (33%), Gaps = 77/289 (26%)

Query: 10  LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHF 69
           LNL       +    F ++ +L VL+     I     IE    +                
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR---QIEVGAFN---------------- 120

Query: 70  VSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLK 128
                        L        ++  L L +  +  +PS   + L+ L+ L +     ++
Sbjct: 121 ------------GLA-------SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIE 160

Query: 129 RVSTSI-CKLKSLIALSAYGCLNLERFPE-SLEKMEHLNQINLGRTTITEQRPSSFENVK 186
            + +    ++ SL+ L       LE   E + E + +L  +NLG   I +    +   + 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLV 218

Query: 187 GLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWL 246
           GLE L       +S N                    P +  G          GLS L  L
Sbjct: 219 GLEEL------EMSGN------------------HFPEIRPG-------SFHGLSSLKKL 247

Query: 247 HLNNCALTSIPQE-IGYLSSLEWLHLRGNNLEGLPASI-KQISRLESLD 293
            + N  ++ I +     L+SL  L+L  NNL  LP  +   +  L  L 
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 38/217 (17%)

Query: 82  NLTDFPH-ISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSI-CKLK 138
           NL + P  IS N   L L E  I+ +  +  K L +L++L+++R   ++ +       L 
Sbjct: 54  NLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLA 112

Query: 139 SLIALSAYGCLNLERFPE-SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELD 197
           +L  L  +    L   P  +   +  L ++ L    I      +F  +  L  L      
Sbjct: 113 NLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL------ 165

Query: 198 NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP 257
           +L +                       LS     +S     GLS L +L+L  C L  IP
Sbjct: 166 DLGEL--------------------KRLSY----ISEGAFEGLSNLRYLNLAMCNLREIP 201

Query: 258 QEIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD 293
             +  L  L+ L L GN+L  +   S + +  L+ L 
Sbjct: 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 26/195 (13%)

Query: 92  NITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSI-CKLKSLIALSAYGCL 149
           N+  L L +  +  +P+     L+ LK L +     ++ + +    ++ SL  L      
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELK 171

Query: 150 NLERFPE-SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
            L    E + E + +L  +NL    + E    +   +  L+ L      +LS N      
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDEL------DLSGN-----H 218

Query: 209 FEYMGAHGSAISQLPSL------SSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-G 261
              +     +   L  L       S +  +  +    L  L  ++L +  LT +P ++  
Sbjct: 219 LSAIRPG--SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 262 YLSSLEWLHLRGNNL 276
            L  LE +HL  N  
Sbjct: 277 PLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 35/147 (23%)

Query: 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
            NL   P+ +    +   +NL    I   + +SF++++ LE L       LS N      
Sbjct: 53  KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEIL------QLSRN------ 98

Query: 209 FEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-GYLSSLE 267
                     I  +               +GL+ L  L L +  LT+IP     YLS L+
Sbjct: 99  ---------HIRTIE----------IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139

Query: 268 WLHLRGNNLEGLPASI-KQISRLESLD 293
            L LR N +E +P+    +I  L  LD
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLD 166

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 35/188 (18%)

Query: 92  NITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN 150
            +  L L    I  +     K L  LK+L I+    L  ++ +     +L +LS   C N
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-N 235

Query: 151 LERFPE-SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSF 209
           L   P  ++  + +L  +NL    I+    S    +  L+ +       L          
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI------QLVGG------- 282

Query: 210 EYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-GYLSSLEW 268
                      QL  +             GL+ L  L+++   LT++ + +   + +LE 
Sbjct: 283 -----------QLAVVEPYA-------FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324

Query: 269 LHLRGNNL 276
           L L  N L
Sbjct: 325 LILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 9e-10
 Identities = 43/249 (17%), Positives = 82/249 (32%), Gaps = 32/249 (12%)

Query: 60  LRSFPSNLHFVSPVTIDFT----SCINLTDFPHISGNITRLYLDETAIEEVPSSI-KCLT 114
             + P  +       +D        +N  +F     ++  L L+E  +  V       L 
Sbjct: 23  FVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVSAVEPGAFNNLF 80

Query: 115 NLKLLRINRCTRLKRVSTSICK-LKSLIALSAYGCLNLERFPE-SLEKMEHLNQINLGRT 172
           NL+ L +    RLK +   +   L +L  L       +    +   + + +L  + +G  
Sbjct: 81  NLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN 138

Query: 173 TITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSS----- 227
            +      +F  +  LE L       L     N  S         A+S L  L       
Sbjct: 139 DLVYISHRAFSGLNSLEQL------TLEKC--NLTSIP-----TEALSHLHGLIVLRLRH 185

Query: 228 -GLVPLSASLLSGLSLLYWLHL-NNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPA-SIK 284
             +  +       L  L  L + +   L ++     Y  +L  L +   NL  +P  +++
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245

Query: 285 QISRLESLD 293
            +  L  L+
Sbjct: 246 HLVYLRFLN 254

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 68/306 (22%), Positives = 113/306 (36%), Gaps = 38/306 (12%)

Query: 10  LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHF 69
           L+L   +   LN   F++  +L  L+     +S   ++E    +      LR+    L  
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVS---AVEPGAFN--NLFNLRTL--GLRS 89

Query: 70  VSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLK 128
                I       L+       N+T+L + E  I  +   + + L NLK L +     L 
Sbjct: 90  NRLKLIPLGVFTGLS-------NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLV 141

Query: 129 RVSTSI-CKLKSLIALSAYGCLNLERFP-ESLEKMEHLNQINLGRTTITEQRPSSFENVK 186
            +S      L SL  L+   C NL   P E+L  +  L  + L    I   R  SF+ + 
Sbjct: 142 YISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 187 GLETLGFSE---LDNLSDNIGNFKSFEYMGAHGSAISQLPS-------------LSS-GL 229
            L+ L  S    LD ++ N     +   +      ++ +P              LS   +
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 230 VPLSASLLSGLSLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPASI-KQIS 287
             +  S+L  L  L  + L    L  +       L+ L  L++ GN L  L  S+   + 
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 288 RLESLD 293
            LE+L 
Sbjct: 321 NLETLI 326

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 37/217 (17%)

Query: 106 VPSSIKCLTNLKLLRI--NRCTRLKRVSTSICKLKSLIALSAYGCLNLE-RFPESLEKME 162
           +  +      +  L +      +   + +S+  L  L  L   G  NL    P ++ K+ 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 163 HLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDN---------IGNFKSFEYMG 213
            L+ + +  T ++   P     +K L TL      + S N         I +  +   + 
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTL------DFSYNALSGTLPPSISSLPNLVGIT 155

Query: 214 AHG--------SAISQLPSLSSGLVPLSASLLSG--------LSLLYWLHLNNCALT-SI 256
             G         +      L + +  +S + L+G        L+L + + L+   L    
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMT-ISRNRLTGKIPPTFANLNLAF-VDLSRNMLEGDA 213

Query: 257 PQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
               G   + + +HL  N+L      +     L  LD
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 48/218 (22%), Positives = 75/218 (34%), Gaps = 37/218 (16%)

Query: 82  NLTDFPH-ISGNITRLYLDETAIEEV-PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKS 139
            LT  P  +  NIT L L    +  +  ++    + L  L +   T  K       KL  
Sbjct: 15  KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 74

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNL 199
           L  L+       +   ++     +L +++L   +I + + + F   K L TL      +L
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL------DL 128

Query: 200 SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE 259
           S N                      LSS            L  L  L L+N  + ++  E
Sbjct: 129 SHN---------------------GLSS----TKLGTQVQLENLQELLLSNNKIQALKSE 163

Query: 260 ---IGYLSSLEWLHLRGNNLEGL-PASIKQISRLESLD 293
              I   SSL+ L L  N ++   P     I RL  L 
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 39/217 (17%), Positives = 73/217 (33%), Gaps = 20/217 (9%)

Query: 91  GNITRLYLDETAIEEV--PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC 148
           G++  L L    I +       + L N+  + ++    L+    S   + SL  L     
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 149 L--NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDN-IGN 205
              N++  P   + + +L  ++L    I        E ++ LE L      +L  N +  
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL------DLQHNNLAR 518

Query: 206 FKSFEYMGAHGSAISQLPSLSS------GLVPLSASLLSGLSLLYWLHLNNCALTSIPQE 259
                  G     +  L  L        G   +   +   L  L  + L    L ++P  
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 260 I-GYLSSLEWLHLRGNNLEGLPASI--KQISRLESLD 293
           +     SL+ L+L+ N +  +   +       L  LD
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 41/244 (16%), Positives = 82/244 (33%), Gaps = 28/244 (11%)

Query: 65  SNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEV-PSSIKCLTNLKLLRINR 123
              +     +       N+    ++  + T+  +   ++ ++   S + L  L+ L +  
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYL-NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 124 CTRLKRVSTSICKLKSLIALSAYG-CLNLERFPESL---EKMEHLNQINLGRTTITEQRP 179
                  S     L +L  LS      +L               L+ +NL +  I++   
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 180 SSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSS------GLVPLS 233
            +F  +  LE L      +L  N             G     L ++          + L+
Sbjct: 399 DAFSWLGHLEVL------DLGLN--EIGQE----LTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 234 ASLLSGLSLLYWLHLNNCALTSI---PQEIGYLSSLEWLHLRGNNLEGLPAS-IKQISRL 289
            +  + +  L  L L   AL ++   P     L +L  L L  NN+  +    ++ + +L
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

Query: 290 ESLD 293
           E LD
Sbjct: 507 EILD 510

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 54/324 (16%), Positives = 107/324 (33%), Gaps = 58/324 (17%)

Query: 10  LNLS--TIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL 67
           L LS   IK  +     F  +  L  L  ++  + +  S+ E+L        +R+   +L
Sbjct: 176 LELSSNQIKEFSPG--CFHAIGRLFGL--FLNNVQLGPSLTEKLCLELANTSIRNL--SL 229

Query: 68  HFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEV-PSSIKCLTNLKLLRINRCTR 126
                     ++  N T       N+T L L    +  V   S   L  L+   +     
Sbjct: 230 SNSQ-----LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 127 LKRVSTSICKLKSLIALSAYGCLNLERF---------PESLEKMEHLNQINLGRTTITEQ 177
               S S+  L ++  L+       +             S + ++ L  +N+    I   
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 178 RPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLS------SGLVP 231
           + + F  +  L+ L      +LS++  + ++         A S L  L+      S +  
Sbjct: 345 KSNMFTGLINLKYL------SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 232 ----------------------LSASLLSGLSLLYWLHLNNCALTSIPQE-IGYLSSLEW 268
                                 L+     GL  ++ ++L+      + +     + SL+ 
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 269 LHLRGNNLEGLPASIKQISRLESL 292
           L LR   L+ + +S      L +L
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNL 482

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 45/316 (14%), Positives = 97/316 (30%), Gaps = 44/316 (13%)

Query: 5   IESIFLNLSTIKGINL--------NLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKG 56
             + F+    +  ++L         L     + NL+ L     +I    +++ + LD   
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ---ALKSEELDIFA 169

Query: 57  CKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKC---- 112
              L+     L               +         +  L+L+   +    +   C    
Sbjct: 170 NSSLKKL--ELSSNQIKEFSPGCFHAIG-------RLFGLFLNNVQLGPSLTEKLCLELA 220

Query: 113 LTNLKLLRI--NRCTRLKRVSTSICKLKSLIALSAYGCLNLERF-PESLEKMEHLNQINL 169
            T+++ L +  ++ +     +    K  +L  L      NL     +S   +  L    L
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFL 279

Query: 170 GRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSS-- 227
               I      S   +  +  L      + +    +  S   +     +   L  L    
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLK--RSFTKQSISLASLPKI--DDFSFQWLKCLEHLN 335

Query: 228 ----GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIG-----YLSSLEWLHLRGNNLEG 278
                +  + +++ +GL  L +L L+N   +              S L  L+L  N +  
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 279 LPA-SIKQISRLESLD 293
           + + +   +  LE LD
Sbjct: 396 IESDAFSWLGHLEVLD 411

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 59/297 (19%), Positives = 106/297 (35%), Gaps = 35/297 (11%)

Query: 9   FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLH 68
            LNL+  +   L    F+  S L  L      IS    +E +L   +   +L+    NL 
Sbjct: 29  VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS---KLEPELC--QKLPMLKVL--NLQ 81

Query: 69  FVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEV-PSSIKCLTNLKLLRINRCTRL 127
                 +   +    T       N+T L+L   +I+++  +      NL  L ++    L
Sbjct: 82  HNELSQLSDKTFAFCT-------NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GL 133

Query: 128 KRVS-TSICKLKSLIALSAYGCLNLERFPE---SLEKMEHLNQINLGRTTITEQRPSSFE 183
                 +  +L++L  L       ++        +     L ++ L    I E  P  F 
Sbjct: 134 SSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 184 NVKGLETLGFSELDNLSDN--IGNFKSFEYMGAHGSAISQLPSLSS-GLVPLSASLLSGL 240
            +  L  L       L++     +      +    ++I  L SLS+  L   S +   GL
Sbjct: 193 AIGRLFGL------FLNNVQLGPSLTEKLCLELANTSIRNL-SLSNSQLSTTSNTTFLGL 245

Query: 241 SL--LYWLHLNNCALTSI-PQEIGYLSSLEWLHLRGNNLEGL-PASIKQISRLESLD 293
               L  L L+   L  +      +L  LE+  L  NN++ L   S+  +  +  L+
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 22/207 (10%)

Query: 92  NITRLYLDETAIEEV-PSSIKCLTNLKLLRI--NRCTRLKRVSTSICKLKSLIALSAYGC 148
           NI  +YL      ++  +S   + +L+ L +       +    +    L++L  L     
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 149 LNLERFPES-LEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELD--NLSDNIGN 205
            N+    +  LE +E L  ++L    +      +          G S L   NL  N   
Sbjct: 491 -NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--G 547

Query: 206 FKSFEYMGAHGSAISQLPSLSS------GLVPLSASLLSGLSLLYWLHLNNCALTSIPQE 259
           F               L  L         L  L AS+ +    L  L+L    +TS+ ++
Sbjct: 548 FDEI-----PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 260 I--GYLSSLEWLHLRGNNLEGLPASIK 284
           +      +L  L +R N  +    SI 
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESIA 629

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 7e-11
 Identities = 47/215 (21%), Positives = 77/215 (35%), Gaps = 40/215 (18%)

Query: 86  FPHISGNITRLYLDETAIE-EVPSSI--KCLTNLKLLRINRCTRLK-RVSTSICKLKSLI 141
             ++S ++  L L        +  ++       L+ L +        ++  ++     L+
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELV 421

Query: 142 ALSAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLS 200
           +L       L    P SL  +  L  + L    +  + P     VK LETL       L 
Sbjct: 422 SLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL------ILD 474

Query: 201 DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALT-SIPQE 259
            N  +                     +G +P     LS  + L W+ L+N  LT  IP+ 
Sbjct: 475 FN--DL--------------------TGEIPSG---LSNCTNLNWISLSNNRLTGEIPKW 509

Query: 260 IGYLSSLEWLHLRGNNLEG-LPASIKQISRLESLD 293
           IG L +L  L L  N+  G +PA +     L  LD
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 9e-10
 Identities = 53/219 (24%), Positives = 83/219 (37%), Gaps = 33/219 (15%)

Query: 92  NITRLYLDETAIE-EVPSSIKC-LTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC- 148
           ++  L L E     E+P  +      L  L ++       V         L +L+     
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

Query: 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKG-LETLGFSELDN-----LSDN 202
            + E   ++L KM  L  ++L     + + P S  N+   L TL  S   N     +  N
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS--SNNFSGPILPN 387

Query: 203 IGNFKSFEYMGAHGSAISQLPSLS------SGLVPLSASLLSGLSLLYWLHLNNCALT-S 255
           +                + L  L       +G +P +   LS  S L  LHL+   L+ +
Sbjct: 388 LCQNPK-----------NTLQELYLQNNGFTGKIPPT---LSNCSELVSLHLSFNYLSGT 433

Query: 256 IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESLD 293
           IP  +G LS L  L L  N LEG +P  +  +  LE+L 
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 8e-09
 Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 27/211 (12%)

Query: 105 EVPSSIKCLTNLKLLRINRCTRLK-RVSTSICKLKSLIALSAYGCLNLE-RFPESLEKME 162
           E+PS +   TNL  + ++   RL   +   I +L++L  L      +     P  L    
Sbjct: 481 EIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNN-SFSGNIPAELGDCR 538

Query: 163 HLNQINLGRTTITEQRPSSFENVKGLETLG---------FSELDNLSDNIGNFKSFEYMG 213
            L  ++L         P++     G                      +  G     E+ G
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 214 AHGSAISQLPSLS---------SGLVPLSASLLSGLSLLYWLHLNNCALT-SIPQEIGYL 263
                +++L + +          G              + +L ++   L+  IP+EIG +
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTS---PTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 264 SSLEWLHLRGNNLEG-LPASIKQISRLESLD 293
             L  L+L  N++ G +P  +  +  L  LD
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 49/307 (15%), Positives = 99/307 (32%), Gaps = 45/307 (14%)

Query: 25  FSNMSNLRVLKFY-------IPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDF 77
              M  L+VL          +PE   ++S     LD            NL      T+  
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 78  TSCINLTD------FPHISGNITRL---YLDETAIE-EVPSSIKCLTNLKLLRINRCTRL 127
              + L +       P    N + L   +L    +   +PSS+  L+ L+ L++     L
Sbjct: 399 ---LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-ML 454

Query: 128 K-RVSTSICKLKSLIALSAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRPSSFENV 185
           +  +   +  +K+L  L      +L    P  L    +LN I+L    +T + P     +
Sbjct: 455 EGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 186 KGLETLGFSELDN-----LSDNIGNFKSFEYMGAHG--------SAISQLPSL-----SS 227
           + L  L  S  +N     +   +G+ +S  ++  +         +A+ +          +
Sbjct: 514 ENLAILKLS--NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571

Query: 228 GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQI 286
           G   +           +             +++  LS+    ++      G    +    
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631

Query: 287 SRLESLD 293
             +  LD
Sbjct: 632 GSMMFLD 638

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 43/207 (20%), Positives = 75/207 (36%), Gaps = 36/207 (17%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVST--SICKLKSLIALSAYGC- 148
            +  L+L  + I    S  KC  +L  L ++R +    V+T  S+     L  L+     
Sbjct: 78  GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT 137

Query: 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
           L+         K+  L  ++L   +I+      +    G   L    L  +S N      
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL--KHLA-ISGN--KI-- 190

Query: 209 FEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALT-SIPQEIGYLSSLE 267
                             SG V +S         L +L +++   +  IP  +G  S+L+
Sbjct: 191 ------------------SGDVDVS-----RCVNLEFLDVSSNNFSTGIP-FLGDCSALQ 226

Query: 268 WLHLRGNNLEG-LPASIKQISRLESLD 293
            L + GN L G    +I   + L+ L+
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLN 253

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 57/279 (20%), Positives = 91/279 (32%), Gaps = 57/279 (20%)

Query: 24  AFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL-HFVSPVTIDFTSCIN 82
              + S L+ L                     G K+   F   +        ++ +S   
Sbjct: 218 FLGDCSALQHLDIS------------------GNKLSGDFSRAISTCTELKLLNISSN-Q 258

Query: 83  LT-DFPH-ISGNITRLYLDETAIE-EVPSSIKC-LTNLKLLRINRCTRLKRVSTSICKLK 138
                P     ++  L L E     E+P  +      L  L ++       V        
Sbjct: 259 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 139 SLIALSAYGC-LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKG-LETLGFSEL 196
            L +L+      + E   ++L KM  L  ++L     + + P S  N+   L TL     
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL----- 373

Query: 197 DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALT-S 255
            +LS N  NF                    SG +  +       + L  L+L N   T  
Sbjct: 374 -DLSSN--NF--------------------SGPILPNLCQNP-KNTLQELYLQNNGFTGK 409

Query: 256 IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESLD 293
           IP  +   S L  LHL  N L G +P+S+  +S+L  L 
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 224 SLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASI 283
            L+ G   +S+SLLS L+ L  L L+N  +          +SL  L L  N+L G   ++
Sbjct: 61  PLNVGFSAVSSSLLS-LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL 119

Query: 284 KQISRLESL 292
             +     L
Sbjct: 120 TSLGSCSGL 128

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 37/212 (17%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
            +  L L    + E    ++ L+ L+ L +N    +      +    S+  L A    N+
Sbjct: 59  KLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YV----QELLVGPSIETLHAANN-NI 111

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDN--------- 202
            R   S    +    I L    IT  R         ++ L      +L  N         
Sbjct: 112 SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYL------DLKLNEIDTVNFAE 163

Query: 203 -IGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIG 261
              +  + E++    + I  +                  + L  L L++  L  +  E  
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV------------FAKLKTLDLSSNKLAFMGPEFQ 211

Query: 262 YLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
             + + W+ LR N L  +  +++    LE  D
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 26/215 (12%), Positives = 60/215 (27%), Gaps = 9/215 (4%)

Query: 81  INLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSL 140
           +N  +    S  +  L L    I +V   +     LK L ++   +L  +         +
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGV 216

Query: 141 IALSAYGCLNLERFPESLEKMEHLNQINLGRTTI-TEQRPSSFENVKGLETLGFSELDNL 199
             +S      L    ++L   ++L   +L             F   + ++T+    +  L
Sbjct: 217 TWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 200 SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE 259
           +       +   +  H  A       +     L A      +LL            +  E
Sbjct: 276 TGQNEEECTVPTL-GHYGAYCCEDLPAPFADRLIALKRKEHALL---SGQGSETERLECE 331

Query: 260 IGYLSSLEWLHLRGNNLEGLPASI-KQISRLESLD 293
               +    +         +   +  +     +L+
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLE 366

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 28/158 (17%)

Query: 155 PESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDN-------IGNFK 207
               +   ++ +++L    +++   +       LE L      NLS N       + +  
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL------NLSSNVLYETLDLESLS 80

Query: 208 SFEYMGAHGSAISQLPSLSS---------GLVPLSASLLSGLSLLYWLHLNNCALTSIP- 257
           +   +  + + + +L    S          +  +S S   G   +Y   L N  +T +  
Sbjct: 81  TLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRD 137

Query: 258 QEIGYLSSLEWLHLRGNNLEGLP--ASIKQISRLESLD 293
            + G  S +++L L+ N ++ +           LE L+
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 34/229 (14%), Positives = 80/229 (34%), Gaps = 51/229 (22%)

Query: 83  LTDFPHISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSICKLKSLI 141
           + +            + ++++++  +S+ +   N+K L ++              L  + 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-----------NPLSQIS 50

Query: 142 ALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSD 201
                           L     L  +NL    + E      E++  L TL      +L++
Sbjct: 51  -------------AADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTL------DLNN 89

Query: 202 N----IGNFKSFEYMGAHGSAISQLPS----------LSS-GLVPLSASLLSGLSLLYWL 246
           N    +    S E + A  + IS++            L++  +  L        S + +L
Sbjct: 90  NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 247 HLNNCALTSIPQE--IGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
            L    + ++          +LE L+L+ N +  +   +   ++L++LD
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLD 197

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 38/342 (11%), Positives = 93/342 (27%), Gaps = 65/342 (19%)

Query: 2   TDAIESIFLNLSTIKGINLN------LRAFSNMSNLRVLKFY---IPEISVHMSIEEQLL 52
           +    +     + ++ +NL+           ++S LR L      + E+ V  SIE   L
Sbjct: 47  SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIET--L 104

Query: 53  DSKGCKI----LRSFPS---------NLHFVSPVTIDFTSCINLT--------------- 84
            +    I                    +  +  +         +                
Sbjct: 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD--EGCRSRVQYLDLKLNEIDTVNFA 162

Query: 85  DFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALS 144
           +    S  +  L L    I +V   +     LK L ++   +L  +         +  +S
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWIS 220

Query: 145 AYGCLNLERFPESLEKMEHLNQINLGRTTI-TEQRPSSFENVKGLETLGFSELDNLSDNI 203
                 L    ++L   ++L   +L             F   + ++T+    +  L+   
Sbjct: 221 LRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 204 GNFKSFEYMGAHGS------------AISQLPSLSSGLVPLSASLLSGLSL-------LY 244
               +   +G +G+             +  L      L+    S    L           
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

Query: 245 WLHLNNCALTSIPQEIGY-LSSLEWLHLRGNNLEGLPASIKQ 285
            +        ++  ++     +   L  +   L+   ++ ++
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 46/303 (15%), Positives = 103/303 (33%), Gaps = 37/303 (12%)

Query: 10  LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHF 69
           L +  +   N   ++  ++ ++  L  ++ E +  + I   +L S     LR        
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 70  VSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKR 129
            SP+ +D  S       P          L + +  E+   ++ +  L  +  + CT    
Sbjct: 213 FSPLPVDEVSS------PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 130 VSTSICKLKSLIALSAYGCLNLER-----------FPESLEKMEHLNQINLGRTTITEQR 178
              +  +   +  L     + + R                  +E + +I +  + +    
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 179 PSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSS--------GLV 230
            S  +++K LE L      +LS+N+   +  +    + +     PSL +          +
Sbjct: 327 CSFSQHLKSLEFL------DLSENLMVEEYLK----NSACKGAWPSLQTLVLSQNHLRSM 376

Query: 231 PLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLE 290
             +  +L  L  L  L ++      +P    +   + +L+L    +  +   I     LE
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLE 434

Query: 291 SLD 293
            LD
Sbjct: 435 VLD 437

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 44/302 (14%), Positives = 102/302 (33%), Gaps = 39/302 (12%)

Query: 9   FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILR-SFPSNL 67
            +     +G  L   +F+ +  L      + E+         L D    +    S    +
Sbjct: 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 68  HFVSPVTIDFTSCINLTDFPHISG---NITRLYLDETAIEEVPSSI-KCLTNLKLLRI-- 121
             V+   +         D   +      + R+ ++ + +  VP S  + L +L+ L +  
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 122 NRCTRLKRVSTS-ICKLKSLIALSAYGCL--NLERFPESLEKMEHLNQINLGRTTITEQR 178
           N        +++      SL  L        ++++  E L  +++L  +++ R T     
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-M 402

Query: 179 PSSFENVKGLETLGFSELDNLSDNI------GNFKSFEYMGAHGSAISQLPSLSSGLVPL 232
           P S +  + +  L      NLS            ++ E +    + +             
Sbjct: 403 PDSCQWPEKMRFL------NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSL-------- 448

Query: 233 SASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASI-KQISRLES 291
                  L  L  L+++   L ++P +      L  + +  N L+ +P  I  +++ L+ 
Sbjct: 449 ------FLPRLQELYISRNKLKTLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 292 LD 293
           + 
Sbjct: 502 IW 503

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 59/217 (27%)

Query: 82  NLTDFP-HISGNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSICKLKS 139
           + T  P  ++  +  L L    I  +    ++   NL++L +              ++ +
Sbjct: 16  SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-----------RINT 64

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNL 199
           +               ++   +  L  ++L    ++    S F  +  L+ L      NL
Sbjct: 65  IE-------------GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL------NL 105

Query: 200 SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL-NNCALTSIPQ 258
             N                   L            SL   L+ L  L + N    + I +
Sbjct: 106 MGN---------------PYQTLGV---------TSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 259 E-IGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD 293
                L+SL  L ++  +L    + S+K I  +  L 
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 44/298 (14%), Positives = 88/298 (29%), Gaps = 31/298 (10%)

Query: 9   FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLH 68
           +L L                     +K      SV        L      IL        
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 69  FVSPVTIDFTSCINLTDFPHISG----NITRLYLDETAIEEVPSSIKC-LTNLKLLRINR 123
             +   +   +         +       I RL++ +  +    S++   L  +K + +  
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 124 CTRLKRVSTSICK-LKSLIALS-AYGCLNLERFPES--LEKMEHLNQINLGRTTIT--EQ 177
             ++  V  S  + LKSL  L  +   +  E    S        L  + L +  +   ++
Sbjct: 320 S-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 178 RPSSFENVKGLETLGFS--ELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSAS 235
                  +K L +L  S      + D+    +   ++    + I  + +           
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT----------- 427

Query: 236 LLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
                  L  L ++N  L S      +L  L+ L++  N L+ LP +      L  + 
Sbjct: 428 --CIPQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLKTLPDAS-LFPVLLVMK 479

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 45/303 (14%), Positives = 95/303 (31%), Gaps = 34/303 (11%)

Query: 9   FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDS-KGCKILRSFPSNL 67
            L+LS  K   +        +NL+VL      I+   +IE     S    + L    ++L
Sbjct: 30  SLDLSFNKITYIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHL 86

Query: 68  HFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSS--IKCLTNLKLLRINRCT 125
             +S       S            ++  L L     + +  +     LTNL+ LRI    
Sbjct: 87  SSLSSSWFGPLS------------SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 126 RLKRVS-TSICKLKSLIALSAYGCLNLERF-PESLEKMEHLNQINLGRTTITEQRPSSFE 183
               +       L SL  L     L+L  +  +SL+ +  ++ + L  +          +
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 184 NVKGLETLGFSELDNLSDNIGNFKSFEYMGA-----------HGSAISQLPSLSSGLVPL 232
            +  +  L   + +            E                  + ++L  L   ++ L
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 233 SASLLSGLSLLYWLHLNNCALTSIPQEIGY-LSSLEWLHLRGNNLEGLPASI-KQISRLE 290
           S       +L      N      + +       ++  LH+    L    +++   + +++
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 291 SLD 293
            + 
Sbjct: 314 RIT 316

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 36/148 (24%)

Query: 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
            +    P  L     +  ++L    IT            L+ L       L  +      
Sbjct: 15  RSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVL------ILKSS------ 60

Query: 209 FEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE-IGYLSSLE 267
                     I+ +                 L  L  L L++  L+S+     G LSSL+
Sbjct: 61  ---------RINTIE----------GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101

Query: 268 WLHLRGNNLEGLPAS--IKQISRLESLD 293
           +L+L GN  + L  +     ++ L++L 
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 46/224 (20%), Positives = 76/224 (33%), Gaps = 26/224 (11%)

Query: 82  NLTDFPH-ISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSI-CKLK 138
            L   P  I     R++L    I  VP++  +   NL +L ++    L R+  +    L 
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLA 80

Query: 139 SLIALSAYGCLNLERFP-ESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELD 197
            L  L       L      +   +  L+ ++L R  + E  P  F  +  L+ L      
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL------ 134

Query: 198 NLSDNIGNFKSFEYMGAHGSAISQLPSLSS------GLVPLSASLLSGLSLLYWLHLNNC 251
            L DN    ++             L +L+        +  +      GL  L  L L+  
Sbjct: 135 YLQDN--ALQAL-----PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 252 ALTSIPQEI-GYLSSLEWLHLRGNNLEGLPASI-KQISRLESLD 293
            +  +       L  L  L+L  NNL  LP      +  L+ L 
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 24/154 (15%)

Query: 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
             L+  P  +       +I L    I+    +SF   + L  L       L  N      
Sbjct: 21  QGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTIL------WLHSN--VLAR 70

Query: 209 FEYMGAHGSAISQLPSLS-------SGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEI- 260
            +      +A + L  L        + L  +  +   GL  L+ LHL+ C L  +   + 
Sbjct: 71  ID-----AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 261 GYLSSLEWLHLRGNNLEGLPASI-KQISRLESLD 293
             L++L++L+L+ N L+ LP    + +  L  L 
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 42/271 (15%), Positives = 83/271 (30%), Gaps = 74/271 (27%)

Query: 10  LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDS-KGCKILR-SFPSNL 67
           + L   +  ++   +F    NL +L  +   ++    I+          + L  S  + L
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLA---RIDAAAFTGLALLEQLDLSDNAQL 93

Query: 68  HFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTR 126
             V P T  F     L            L+LD   ++E+   + + L  L+ L +     
Sbjct: 94  RSVDPAT--FHGLGRL----------HTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-A 140

Query: 127 LKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVK 186
           L+ +                         ++   + +L  + L    I+     +F  + 
Sbjct: 141 LQALP-----------------------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 187 GLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWL 246
            L+ L       L  N                  ++  +              L  L  L
Sbjct: 178 SLDRL------LLHQN------------------RVAHVHPH-------AFRDLGRLMTL 206

Query: 247 HLNNCALTSIPQEI-GYLSSLEWLHLRGNNL 276
           +L    L+++P E    L +L++L L  N  
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 37/209 (17%), Positives = 72/209 (34%), Gaps = 33/209 (15%)

Query: 92  NITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN 150
            +T L +    +E +     +  T+L+ L+++   RL  V  S+  + SL   +      
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSL--IPSLFHANVSYN-- 196

Query: 151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFE 210
                 +L     + +++    +I   R         L  L       L  N  N     
Sbjct: 197 ---LLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTIL------KLQHN--NLTDT- 241

Query: 211 YMGAHGSAISQLPSLSS------GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLS 264
                 + +   P L         L  +       +  L  L+++N  L ++      + 
Sbjct: 242 ------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP 295

Query: 265 SLEWLHLRGNNLEGLPASIKQISRLESLD 293
           +L+ L L  N+L  +  +  Q  RLE+L 
Sbjct: 296 TLKVLDLSHNHLLHVERNQPQFDRLENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 28/202 (13%), Positives = 58/202 (28%), Gaps = 43/202 (21%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
           ++    +    +  +         ++ L  +    +  V   +     L  L      N 
Sbjct: 187 SLFHANVSYNLLSTLAI----PIAVEELDASHN-SINVVRGPV--NVELTILKLQH--NN 237

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEY 211
                 L     L +++L    + +     F  ++ LE L       +S+N         
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL------YISNN--------- 282

Query: 212 MGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL 271
                  +  L                 +  L  L L++  L  + +       LE L+L
Sbjct: 283 ------RLVALNLY-----------GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL 325

Query: 272 RGNNLEGLPASIKQISRLESLD 293
             N++  L  S      L++L 
Sbjct: 326 DHNSIVTLKLST--HHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 35/191 (18%)

Query: 106 VPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKMEHL 164
           + S+++       + I+  T+          L +   ++      + + P   L+    +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQV 71

Query: 165 NQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPS 224
             +NL    I E    +F     ++ L       +  N               AI  LP 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKL------YMGFN---------------AIRYLP- 109

Query: 225 LSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPASI 283
                      +   + LL  L L    L+S+P+ I      L  L +  NNLE +    
Sbjct: 110 ---------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 284 -KQISRLESLD 293
            +  + L++L 
Sbjct: 161 FQATTSLQNLQ 171

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.8 bits (140), Expect = 8e-10
 Identities = 32/211 (15%), Positives = 73/211 (34%), Gaps = 11/211 (5%)

Query: 91  GNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSIC--KLKSLIALSAYG 147
           G++  L L    +  + SS  K L++L  L +      K +  +     L  L  L    
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGN 158

Query: 148 CLNLERFPE-SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSE--LDNLSDNI- 203
                +        +  L ++ +  + +    P S ++++ +  L         L +   
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218

Query: 204 GNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYL 263
               S E +    + +       S L     + L        + + + +L  + + +  +
Sbjct: 219 DVTSSVECLELRDTDLDTFHF--SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276

Query: 264 SSLEWLHLRGNNLEGLPASI-KQISRLESLD 293
           S L  L    N L+ +P  I  +++ L+ + 
Sbjct: 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 36/223 (16%), Positives = 69/223 (30%), Gaps = 47/223 (21%)

Query: 82  NLTDFP-HISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSICKLKS 139
           +L   P  ++  +  L L    I  + +S  +   NL+ L +               + +
Sbjct: 42  SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-----------NGINT 90

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNL 199
           +               +S   +  L  ++L    ++    S F+ +  L  L      NL
Sbjct: 91  IE-------------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL------NL 131

Query: 200 SDNIGNFKSFEYMGAHGSAISQLPSLSSG-------LVPLSASLLSGLSLLYWLHLNNCA 252
             N   +K+        S  S L  L             +     +GL+ L  L ++   
Sbjct: 132 LGN--PYKTLG----ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 253 LTSIPQEI-GYLSSLEWLHLRGNNLEGLPASI-KQISRLESLD 293
           L S   +    + ++  L L       L        S +E L+
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 8e-10
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 33/209 (15%)

Query: 92  NITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN 150
            +T L +    +E +     +  T+L+ L+++   RL  V  S+  + SL   +    L 
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSL--IPSLFHANVSYNLL 204

Query: 151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFE 210
                 +L     + +++    +I   R      +  L          L  N  N     
Sbjct: 205 -----STLAIPIAVEELDASHNSINVVRGPVNVELTIL---------KLQHN--NLTDT- 247

Query: 211 YMGAHGSAISQLPSLSS------GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLS 264
                 + +   P L         L  +       +  L  L+++N  L ++      + 
Sbjct: 248 ------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP 301

Query: 265 SLEWLHLRGNNLEGLPASIKQISRLESLD 293
           +L+ L L  N+L  +  +  Q  RLE+L 
Sbjct: 302 TLKVLDLSHNHLLHVERNQPQFDRLENLY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 35/192 (18%)

Query: 105 EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKMEH 163
            + S+++       + I+  T+          L +   ++      + + P   L+    
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQ 76

Query: 164 LNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLP 223
           +  +NL    I E    +F     ++ L       +  N               AI  LP
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKL------YMGFN---------------AIRYLP 115

Query: 224 SLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPAS 282
                       +   + LL  L L    L+S+P+ I      L  L +  NNLE +   
Sbjct: 116 ----------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165

Query: 283 I-KQISRLESLD 293
             +  + L++L 
Sbjct: 166 TFQATTSLQNLQ 177

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 22/188 (11%), Positives = 58/188 (30%), Gaps = 24/188 (12%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
           ++    +    +  +         ++ L  +    +  V   +     L  L      N 
Sbjct: 193 SLFHANVSYNLLSTLAI----PIAVEELDASHN-SINVVRGPVNV--ELTILKLQH--NN 243

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS--ELDNLSDNIGNFKSF 209
                 L     L +++L    + +     F  ++ LE L  S   L  L+       + 
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL 303

Query: 210 EYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWL 269
           + +    + +  +                    L  L+L++ ++ ++   +    +L+ L
Sbjct: 304 KVLDLSHNHLLHVERN-----------QPQFDRLENLYLDHNSIVTLK--LSTHHTLKNL 350

Query: 270 HLRGNNLE 277
            L  N+ +
Sbjct: 351 TLSHNDWD 358

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 25/222 (11%)

Query: 82  NLTDFP-HISGNITRLYLDETAIEEV-PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKS 139
            L + P  +  +   L      +  +  ++   L NL  L + RC        +      
Sbjct: 23  GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNL 199
           L  L       +     +L   + L  +   +T I+        N K LE+L       L
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL------YL 136

Query: 200 SDNIGNFKSFEYMGAHGSAISQLPSLS---------SGLVPLSASLLSGLSLLYWLHLNN 250
             N  +  S +              L            L     S L   + L  L+LN 
Sbjct: 137 GSN--HISSIKL-----PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNG 188

Query: 251 CALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292
             +  I       +  + L+  G     +     + S ++SL
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 50/290 (17%), Positives = 83/290 (28%), Gaps = 48/290 (16%)

Query: 9   FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLH 68
            L L+    I +   A S    L+ L F   +  +       L + K  + L      L 
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFI--QTGISSIDFIPLHNQKTLESL-----YLG 137

Query: 69  FVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEV-PSSIKCLTNLKLLRIN-RCTR 126
                +I                 +  L     AI  +    +  L     L +N     
Sbjct: 138 SNHISSIKLPKGFPTE-------KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 127 LKRVSTSICKLKSLIALSAYGCLNLERFPESLE--KMEHLNQINLGRTTITEQRPSSFEN 184
           +  +           +L+  G  NL    + L+   ++ L           +  P+ FE 
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE- 249

Query: 185 VKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLY 244
             GL  +    ++ L  +                     ++SS             S L 
Sbjct: 250 --GLCEMSVESIN-LQKH------------------YFFNISSNT-------FHCFSGLQ 281

Query: 245 WLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD 293
            L L    L+ +P  +  LS+L+ L L  N  E L   S      L  L 
Sbjct: 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 44/309 (14%), Positives = 101/309 (32%), Gaps = 45/309 (14%)

Query: 5   IESIFLNLSTIKGINLN-------LRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGC 57
             + F   S ++ ++L              +S L+ L     +     ++ +        
Sbjct: 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE---NLCQISA--SNF 324

Query: 58  KILRS--FPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDE---TAIEEVPSSIKC 112
             L       N   +   T    +  NL            L L        +     ++ 
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLR----------ELDLSHDDIETSDCCNLQLRN 374

Query: 113 LTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC-LNLERFPESLEKMEHLNQINLGR 171
           L++L+ L ++    L   + +  +   L  L      L ++      + +  L  +NL  
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 172 TTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSS---- 227
           + +       F+ +  L+ L      NL  N  +F          +++  L  L      
Sbjct: 435 SLLDISSEQLFDGLPALQHL------NLQGN--HFPKGNIQ--KTNSLQTLGRLEILVLS 484

Query: 228 --GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGL-PASIK 284
              L  +     + L ++  + L++  LTS   E        +L+L  N++  + P+ + 
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP 544

Query: 285 QISRLESLD 293
            +S+  +++
Sbjct: 545 ILSQQRTIN 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 33/141 (23%)

Query: 155 PESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGA 214
             +  ++ +L  ++L R  I      +F++   L+TL       L+ N            
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL------VLTAN------------ 91

Query: 215 HGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSI-PQEIGYLSSLEWLHLRG 273
                     L      ++ + LSG   L  L      ++SI    +    +LE L+L  
Sbjct: 92  ---------PLIF----MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138

Query: 274 NNLEGLPA-SIKQISRLESLD 293
           N++  +         +L+ LD
Sbjct: 139 NHISSIKLPKGFPTEKLKVLD 159

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 30/201 (14%)

Query: 92  NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVS--TSICKLKSLIALSAYGC 148
           ++  L L       + + + K    L+LL +    RLK     +    L  L  L+    
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 149 LNLERFP-ESLEKMEHLNQINLGR---TTITEQRPSSFENVKGLETLGFSELDNLSDNIG 204
             L+    +  + +  L  +NL          Q+ +S + +  LE L       LS    
Sbjct: 436 -LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL------VLSFC-- 486

Query: 205 NFKSFEYMGAHGSAISQLPSLSS------GLVPLSASLLSGLSLLYWLHLNNCALTSIPQ 258
           +  S         A + L  ++        L   S   LS L  +Y L+L +  ++ I  
Sbjct: 487 DLSSI-----DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILP 540

Query: 259 EI-GYLSSLEWLHLRGNNLEG 278
            +   LS    ++LR N L+ 
Sbjct: 541 SLLPILSQQRTINLRQNPLDC 561

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 50/307 (16%), Positives = 103/307 (33%), Gaps = 37/307 (12%)

Query: 7   SIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSN 66
             F N   ++  + +  A   + NL + +F +  +  ++     L +        S  S 
Sbjct: 235 GEFRNEGNLEKFDKS--ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 67  -------LHFVSPVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPSSIKCLTNLKL 118
                    +                FP +   ++ RL           S +  L +L+ 
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEF 351

Query: 119 LRI--NRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITE 176
           L +  N  +     S S     SL  L       +     +   +E L  ++   + + +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 177 -QRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLS----SG--- 228
               S F +++ L  L      ++S    + +            + L SL     +G   
Sbjct: 411 MSEFSVFLSLRNLIYL------DISHT--HTRVAFN-----GIFNGLSSLEVLKMAGNSF 457

Query: 229 LVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPASI-KQI 286
                  + + L  L +L L+ C L  +       LSSL+ L++  N L+ +P  I  ++
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 287 SRLESLD 293
           + L+ + 
Sbjct: 518 TSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 60/305 (19%), Positives = 103/305 (33%), Gaps = 31/305 (10%)

Query: 2   TDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEE---QLLDSKGCK 58
            + +++    L+ ++   L L  F N  NL        E   +++IEE     LD     
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 59  ILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPS-SIKCLTNLK 117
           I+  F + L  VS  ++   +   + DF +       L L      + P+  +K L  L 
Sbjct: 274 IIDLF-NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLT 331

Query: 118 LLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQ 177
                           +  L+ L  LS  G        +S      L  ++L    +   
Sbjct: 332 FTSNK--GGNAFSEVDLPSLEFLD-LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 387

Query: 178 RPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSL------SSGLVP 231
             S+F  ++ LE L      +   +  N K         S    L +L       +    
Sbjct: 388 MSSNFLGLEQLEHL------DFQHS--NLKQMS----EFSVFLSLRNLIYLDISHTHTRV 435

Query: 232 LSASLLSGLSLLYWLHLNNCALTSI--PQEIGYLSSLEWLHLRGNNLEGLPASI-KQISR 288
               + +GLS L  L +   +      P     L +L +L L    LE L  +    +S 
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 289 LESLD 293
           L+ L+
Sbjct: 496 LQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 52/306 (16%), Positives = 94/306 (30%), Gaps = 29/306 (9%)

Query: 10  LNLST--IKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL 67
           LN++   I+   L    FSN++NL  L     +I    SI    L       L +   +L
Sbjct: 129 LNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLNLSLDL 184

Query: 68  HFVSPVTIDFT--SCINLTDFPHISGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRC 124
                  I       I L     +  N   L + +T I+ +    +  L   +       
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKL-TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 125 TRL-KRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFE 183
            +  K     +C L       AY    L+   +    + +++  +L   TI   +  S+ 
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 184 NVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSS--------------GL 229
              G + L               KS + +    +      S                   
Sbjct: 304 F--GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 230 VPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASI--KQIS 287
               +    G + L +L L+   + ++      L  LE L  + +NL+ +        + 
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 288 RLESLD 293
            L  LD
Sbjct: 422 NLIYLD 427

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 24/154 (15%)

Query: 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
           LN  + P++L        ++L    +      SF +   L+ L      +LS      ++
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVL------DLSRC--EIQT 66

Query: 209 FEYMGAHGSAISQLPSL------SSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE-IG 261
                    A   L  L       + +  L+    SGLS L  L      L S+    IG
Sbjct: 67  I-----EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 262 YLSSLEWLHLRGNNLE--GLPASIKQISRLESLD 293
           +L +L+ L++  N ++   LP     ++ LE LD
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 48/216 (22%), Positives = 78/216 (36%), Gaps = 39/216 (18%)

Query: 82  NLTDFP-HISGNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSI-CKLK 138
            L   P  +  +   L L    I E+     K L NL  L +    ++ ++S      L 
Sbjct: 42  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLV 100

Query: 139 SLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDN 198
            L  L       L+  PE + K   L ++ +    IT+ R S F  +  +  +       
Sbjct: 101 KLERLYLSKN-QLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVV------E 151

Query: 199 LSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ 258
           L  N                      L S    +      G+  L ++ + +  +T+IPQ
Sbjct: 152 LGTN---------------------PLKS--SGIENGAFQGMKKLSYIRIADTNITTIPQ 188

Query: 259 EIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD 293
             G   SL  LHL GN +  + A S+K ++ L  L 
Sbjct: 189 --GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 36/194 (18%), Positives = 70/194 (36%), Gaps = 37/194 (19%)

Query: 92  NITRLYLDETAIEEVPSSI-KCLTNLKLLRI--NRCTRLKRVSTSICKLKSLIALSAYGC 148
            +  L + E  I +V  S+   L  + ++ +  N        + +   +K L  +     
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
            N+   P+ L     L +++L    IT+   +S + +  L  L       LS N      
Sbjct: 182 -NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL------GLSFN------ 226

Query: 209 FEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEW 268
                    +IS +              L+    L  LHLNN  L  +P  +     ++ 
Sbjct: 227 ---------SISAVD----------NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 267

Query: 269 LHLRGNNLEGLPAS 282
           ++L  NN+  + ++
Sbjct: 268 VYLHNNNISAIGSN 281

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 34/222 (15%), Positives = 77/222 (34%), Gaps = 36/222 (16%)

Query: 79  SCINLTDFPHISGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSI-CK 136
           +C ++   P +  +   L L ET +  +PS +   L N+  + ++    L+++ +     
Sbjct: 19  TCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78

Query: 137 LKSLIALSAYGCLNLERFP-ESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSE 195
           L  +  +      NL     ++L+++  L  + +  T +       F ++  + +     
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-----MFPDLTKVYSTDIFF 133

Query: 196 LDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGL-SLLYWLHLNNCALT 254
           +  ++DN                          +  +  +   GL +    L L N   T
Sbjct: 134 ILEITDN------------------------PYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

Query: 255 SIPQEIGYLSSLEWLHLRGNN-LEGLPASI--KQISRLESLD 293
           S+       + L+ ++L  N  L  +         S    LD
Sbjct: 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 40/220 (18%)

Query: 82  NLTDFPH-ISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRI--NRCTRLKRVSTSICKL 137
            LT  P  I  + TRL L+   ++ +P  +   LT L  L +  N  +     S S    
Sbjct: 18  GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 138 KSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITE-QRPSSFENVKGLETLGFSEL 196
            SL  L       +     +   +E L  ++   + + +    S F +++ L  L     
Sbjct: 78  TSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL----- 131

Query: 197 DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL-NNCALTS 255
            ++S                          +G+        +GLS L  L +  N    +
Sbjct: 132 -DISHT------------------HTRVAFNGI-------FNGLSSLEVLKMAGNSFQEN 165

Query: 256 IPQEI-GYLSSLEWLHLRGNNLEGLPASI-KQISRLESLD 293
              +I   L +L +L L    LE L  +    +S L+ L+
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 47/273 (17%), Positives = 90/273 (32%), Gaps = 51/273 (18%)

Query: 10  LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHF 69
           L L + K  +L    F  ++ L  L      +S      +    +   K L    + +  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92

Query: 70  VSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSS--IKCLTNLKLLRINRCTRL 127
           +S    +F     L            L    + ++++        L NL  L I+     
Sbjct: 93  MSS---NFLGLEQL----------EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HT 138

Query: 128 KRVSTSICK-LKSLIALSAYGCLNLERFPE-SLEKMEHLNQINLGRTTITEQRPSSFENV 185
           +     I   L SL  L   G    E F      ++ +L  ++L +  + +  P++F ++
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 186 KGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYW 245
             L+ L      N+S N                     SL +            L+ L  
Sbjct: 199 SSLQVL------NMSHN------------------NFFSLDTF-------PYKCLNSLQV 227

Query: 246 LHLNNCALTSIPQEI--GYLSSLEWLHLRGNNL 276
           L  +   + +  ++    + SSL +L+L  N+ 
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 33/147 (22%)

Query: 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
             L   P  +       ++ L    +       F+ +  L  L      +LS N      
Sbjct: 17  KGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKL------SLSSN------ 62

Query: 209 FEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEW 268
                           LS       +    G + L +L L+   + ++      L  LE 
Sbjct: 63  ---------------GLSF--KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105

Query: 269 LHLRGNNLEGLPAS--IKQISRLESLD 293
           L  + +NL+ +        +  L  LD
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLD 132

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 40/216 (18%)

Query: 82  NLTDFP-HISGNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVST-SICKLK 138
            L   P  IS + T L L    I E+     K L +L  L +    ++ ++   +   L+
Sbjct: 44  GLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLR 102

Query: 139 SLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDN 198
            L  L      +L   P +L     L ++ +    I +     F  ++ +  +       
Sbjct: 103 KLQKLYISKN-HLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCI------E 153

Query: 199 LSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ 258
           +  N                   L +              GL L Y L ++   LT IP+
Sbjct: 154 MGGN------------------PLEN-----SGFEPGAFDGLKLNY-LRISEAKLTGIPK 189

Query: 259 EIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD 293
           ++    +L  LHL  N ++ +    + + S+L  L 
Sbjct: 190 DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 38/194 (19%), Positives = 64/194 (32%), Gaps = 38/194 (19%)

Query: 92  NITRLYLDETAIEEVPSSI-KCLTNLKLLRI--NRCTRLKRVSTSICKLKSLIALSAYGC 148
           ++  L + +  I +VP  +   L N+  + +  N                 L  L     
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-GFEPGAFDGLKLNYLRISEA 182

Query: 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
             L   P+ L   E LN+++L    I             L  L       L  N      
Sbjct: 183 -KLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRL------GLGHN------ 227

Query: 209 FEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEW 268
                       Q+  + +G        LS L  L  LHL+N  L+ +P  +  L  L+ 
Sbjct: 228 ------------QIRMIENGS-------LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 268

Query: 269 LHLRGNNLEGLPAS 282
           ++L  NN+  +  +
Sbjct: 269 VYLHTNNITKVGVN 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 46/196 (23%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKL--LRINRCTRLKRVSTSICKLKSLIALSAYGCL 149
           N+  + +    +E           LKL  LRI+   +L  +   +   ++L  L      
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDL--PETLNELHLDH-N 203

Query: 150 NLERFPE-SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
            ++      L +   L ++ LG   I      S   +  L  L      +L +N      
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL------HLDNN------ 251

Query: 209 FEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-------G 261
                       +L  + +GL          L LL  ++L+   +T +            
Sbjct: 252 ------------KLSRVPAGL--------PDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 262 YLSSLEWLHLRGNNLE 277
             +    + L  N + 
Sbjct: 292 KRAYYNGISLFNNPVP 307

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 45/281 (16%), Positives = 106/281 (37%), Gaps = 33/281 (11%)

Query: 21  NLRAFSNMSNLRVLKFYIPEISVHMSIEE----QLLDSKGCKILRSFPSNLHFVSPVTID 76
           ++   +N++NL  L  +  +I+    ++       L+     I     +     S   + 
Sbjct: 104 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLS 162

Query: 77  FTSCINLTDFPHISG--NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSI 134
           F +   +TD   ++    + RL +    + +  S +  LTNL+ L      ++  ++  +
Sbjct: 163 FGN--QVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNN-QISDIT-PL 217

Query: 135 CKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS 194
             L +L  LS  G   L+    +L  + +L  ++L    I+    +    +  L  L   
Sbjct: 218 GILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLG 273

Query: 195 --ELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCA 252
             ++ N+S  +    +   +  + + +  +              +S L  L +L L    
Sbjct: 274 ANQISNIS-PLAGLTALTNLELNENQLEDISP------------ISNLKNLTYLTLYFNN 320

Query: 253 LTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
           ++ I   +  L+ L+ L    N +  +  S+  ++ +  L 
Sbjct: 321 ISDIS-PVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLS 359

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 43/216 (19%), Positives = 82/216 (37%), Gaps = 24/216 (11%)

Query: 82  NLTDFPHISG--NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKS 139
            L D   ++   N+T L L    I  +   +  LT L  L++    ++  +S  +  L +
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN-QISNIS-PLAGLTA 288

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS--ELD 197
           L  L       LE     +  +++L  + L    I++   S   ++  L+ L F   ++ 
Sbjct: 289 LTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVS 344

Query: 198 NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP 257
           ++S ++ N  +  ++ A  + IS L  L+             L+ +  L LN+ A T+ P
Sbjct: 345 DVS-SLANLTNINWLSAGHNQISDLTPLA------------NLTRITQLGLNDQAWTNAP 391

Query: 258 QEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
                  S+             PA+I         D
Sbjct: 392 VNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPD 427

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 38/204 (18%), Positives = 77/204 (37%), Gaps = 25/204 (12%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
              +  L +T + +  S    L  +  L+ +R   +K +   +  L +L  ++      L
Sbjct: 25  EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNN-QL 80

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSD--NIGNFKSF 209
                 L+ +  L  I +    I +   +   N+  L  L     + ++D   + N  + 
Sbjct: 81  TDITP-LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFN-NQITDIDPLKNLTNL 136

Query: 210 EYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWL 269
             +    + IS + +LS            GL+ L  L   N      P  +  L++LE L
Sbjct: 137 NRLELSSNTISDISALS------------GLTSLQQLSFGNQVTDLKP--LANLTTLERL 182

Query: 270 HLRGNNLEGLPASIKQISRLESLD 293
            +  N +  +   + +++ LESL 
Sbjct: 183 DISSNKVSDIS-VLAKLTNLESLI 205

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 50/299 (16%), Positives = 95/299 (31%), Gaps = 84/299 (28%)

Query: 20  LNLRAFSNMSNLRVLKFYIPEISVH-MSIEEQLLDSKGC-K------ILRSFPSNLHFVS 71
           L LR    +  LR  K     + +  +          G  K      +  S+        
Sbjct: 138 LKLR--QALLELRPAKN----VLIDGV---------LGSGKTWVALDVCLSYKVQCKMDF 182

Query: 72  PVT-IDFTSCINLTDFPHISGNI-TRLYLDETAIEEVPSSIKCLTNLKLLRINRC-TRLK 128
            +  ++  +C +      +   +  ++  + T+  +  S+IK       LRI+     L+
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-------LRIHSIQAELR 235

Query: 129 RVSTSICKLKSLIALSAYGCLNLERFPESL------EKMEHLNQINLG-RTTITEQRPSS 181
           R+                  L  + +   L      +  +  N  NL  +  +T +    
Sbjct: 236 RL------------------LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 182 FENVKGLETLGFSELDNLSDNIGNFKSFEYMGAH-GSAISQLPSLSSGLVPLSASLLSGL 240
            + +    T   S LD+ S  +   +    +  +       LP       P   S++   
Sbjct: 278 TDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AE 335

Query: 241 SLL-------YWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292
           S+         W H+N   LT+I +     SSL       N LE  PA  ++    + L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIE-----SSL-------NVLE--PAEYRK--MFDRL 378

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 42/274 (15%), Positives = 76/274 (27%), Gaps = 74/274 (27%)

Query: 44  HMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAI 103
           HM  E      +   IL        F      +F  C ++ D P     +++  +D   I
Sbjct: 6   HMDFETGEHQYQYKDIL------SVFEDAFVDNF-DCKDVQDMP--KSILSKEEIDH--I 54

Query: 104 EEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEK--- 160
                            ++   RL               L +     +++F E + +   
Sbjct: 55  IMSKD-----------AVSGTLRL------------FWTLLSKQEEMVQKFVEEVLRINY 91

Query: 161 ---MEHL----NQINLGRTTITEQR------PSSFE--NVKGLETLGFSELDNLSDNIGN 205
              M  +     Q ++      EQR         F   NV  L+         L   +  
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-----PYLKLRQALLE 146

Query: 206 FKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLL-------YWLHLNNCALTSIPQ 258
            +  + +   G          SG   ++  +     +        +WL+L NC   S   
Sbjct: 147 LRPAKNVLIDGVL-------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC--NSPET 197

Query: 259 EIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292
            +  L  L    +  N       S     R+ S+
Sbjct: 198 VLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSI 230

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 22/82 (26%)

Query: 1   RTDAIESIFLNLSTIK------GINLNLRAFSNMSNLRVLKFYIPEISVH---------- 44
           R      +FL+   ++          N    S ++ L+ LKFY P I  +          
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASG-SILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 45  -----MSIEEQLLDSKGCKILR 61
                  IEE L+ SK   +LR
Sbjct: 548 ILDFLPKIEENLICSKYTDLLR 569

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 56/301 (18%), Positives = 95/301 (31%), Gaps = 61/301 (20%)

Query: 6   ESIFLNLSTIKGINLNL--------RAFSNMSNLRVLKFY---IPEISVHM-----SIEE 49
             +F  L  +K +NL           AF  + NL+VL      + E+          +  
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342

Query: 50  QLLDSKGCKILRSFPSNLHFVSPV-TIDFTSCINLTDFPHISGNITRLYLDETAIEEVPS 108
             +D +   I         F+  + T+D      LT    I  +I  ++L    +  +P 
Sbjct: 343 --IDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHFIP-SIPDIFLSGNKLVTLPK 398

Query: 109 SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC----LNLERFPESLEKMEHL 164
                  + L   NR   L  +   + ++  L  L          + ++ P     +E L
Sbjct: 399 INLTANLIHLSE-NRLENLDILY-FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 165 N--QINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQL 222
              +  L     TE     FE +  L+ L       L+ N                    
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVL------YLNHN-------------------- 490

Query: 223 PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPAS 282
                 L  L   + S L+ L  L LN+  LT +       ++LE L +  N L      
Sbjct: 491 -----YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPD 544

Query: 283 I 283
           +
Sbjct: 545 V 545

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 7e-08
 Identities = 59/294 (20%), Positives = 106/294 (36%), Gaps = 40/294 (13%)

Query: 9   FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLH 68
            L+LS     +LN R F  + +L+VL     +I+    I ++     G   L+    NL 
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN---KIADEAF--YGLDNLQVL--NLS 322

Query: 69  FVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRL 127
           +     +  ++   L         +  + L +  I  +     K L  L+ L +      
Sbjct: 323 YNLLGELYSSNFYGLP-------KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL------ 369

Query: 128 KRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKME-HLNQINLGRTTITEQRPSSF-EN 184
                    L ++  + +   + L      +L K+    N I+L    +       F   
Sbjct: 370 -----RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424

Query: 185 VKGLETLGFSE--LDNLSDN--IGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGL 240
           V  L+ L  ++    + S +       S E +    + +            L   +  GL
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE-----LCWDVFEGL 479

Query: 241 SLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
           S L  L+LN+  L S+P  +  +L++L  L L  N L  L  +    + LE LD
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILD 532

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 53/320 (16%), Positives = 113/320 (35%), Gaps = 46/320 (14%)

Query: 5   IESIFLNLSTIKGINL--------NLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKG 56
           +  +   L+T + + L           +F  +  L++L+       + +  +E   +   
Sbjct: 16  LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPN 74

Query: 57  CKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNL 116
            +IL    S ++F+ P    F    +L +   +        L +  ++      + L  L
Sbjct: 75  LRILDLGSSKIYFLHPDA--FQGLFHLFEL-RLYFC----GLSDAVLK--DGYFRNLKAL 125

Query: 117 KLLRI--NRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLE--KMEHLNQINLGRT 172
             L +  N+   L  +  S  KL SL ++              LE  + + L+  +L   
Sbjct: 126 TRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 173 TITEQRPSSFENVKG-LETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVP 231
           ++  +    +         +    LD +S   GN  + +  G   +AIS+  + S  L  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILD-VS---GNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 232 --------------LSASLLSGL--SLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGN 274
                            +  +GL  S +  L L++  + S+   +   L  L+ L+L  N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 275 NLEGLPASI-KQISRLESLD 293
            +  +       +  L+ L+
Sbjct: 301 KINKIADEAFYGLDNLQVLN 320

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 38/204 (18%), Positives = 59/204 (28%), Gaps = 55/204 (26%)

Query: 82  NLTDFPHISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSICKLKSL 140
           NLT  P +     RL L    I  V +S    L  L+LL +                   
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ---------------- 58

Query: 141 IALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLS 200
                     L    E+   + +L  ++LG + I    P +F+ +  L  L       L 
Sbjct: 59  -------YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL------RLY 105

Query: 201 DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP--Q 258
                                   LS     L       L  L  L L+   + S+    
Sbjct: 106 FC---------------------GLSD--AVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 259 EIGYLSSLEWLHLRGNNLEGLPAS 282
             G L+SL+ +    N +  +   
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEH 166

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 40/156 (25%), Positives = 57/156 (36%), Gaps = 26/156 (16%)

Query: 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
            NL + P+ L   E L    L    I     SSF  ++ L+ L       L         
Sbjct: 14  CNLTQVPQVLNTTERLL---LSFNYIRTVTASSFPFLEQLQLL------ELGSQYTPLTI 64

Query: 209 FEYMGAHGSAISQLPSL------SSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGY 262
                    A   LP+L      SS +  L      GL  L+ L L  C L+    + GY
Sbjct: 65  ------DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 263 ---LSSLEWLHLRGNNLEGLP--ASIKQISRLESLD 293
              L +L  L L  N +  L    S  +++ L+S+D
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 47/315 (14%), Positives = 91/315 (28%), Gaps = 57/315 (18%)

Query: 6   ESIFLNLSTIKGINLNLRAFSNMSNLRVLKF---YIPEISVHMSIEE----QLLDSKGCK 58
             + L    +    L    F N+  L  L      I  + +H S  +    + +D    +
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 59  ILRSFPSNLHFVSPVTIDFT--SCINLTDFPHIS----------GNITRLYLDETAIEEV 106
           I       L  +   T+ F   +  +L     +             +  L +        
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219

Query: 107 PSSI--KCLTNLKLLRINRCTRLKRVSTSICKLKSLI--ALSAYGCLNLERF-------- 154
            +      ++  +   +     +         +K       +     ++           
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 155 ---PESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEY 211
                  E ++ L  +NL    I +    +F  +  L+ L      NLS N         
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL------NLSYN--LLGEL-- 329

Query: 212 MGAHGSAISQLPSL------SSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSS 265
              + S    LP +       + +  +       L  L  L L + ALT+I     ++ S
Sbjct: 330 ---YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPS 382

Query: 266 LEWLHLRGNNLEGLP 280
           +  + L GN L  LP
Sbjct: 383 IPDIFLSGNKLVTLP 397

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 49/297 (16%), Positives = 103/297 (34%), Gaps = 41/297 (13%)

Query: 9   FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPS-NL 67
            L+L + K   L+  AF  + +L  L+ Y         + + +L     + L++    +L
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLY------FCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 68  HFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTR 126
                 ++          F  ++ ++  +      I  V    ++ L    L   +    
Sbjct: 131 SKNQIRSLYLHPS-----FGKLN-SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL--- 181

Query: 127 LKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFEN-V 185
                 +   L S +++    C+N  R          L  +++     T     +F N +
Sbjct: 182 ------AANSLYSRVSVDWGKCMNPFRNM-------VLEILDVSGNGWTVDITGNFSNAI 228

Query: 186 KGLETLGFSELDNLSD------NIGNFKSFEYMGAHGSAISQLPSLSS-GLVPLSASLLS 238
              +        ++        NI +     + G   S++  L  LS   +  L++ +  
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL-DLSHGFVFSLNSRVFE 287

Query: 239 GLSLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPASIKQ-ISRLESLD 293
            L  L  L+L    +  I  E    L +L+ L+L  N L  L +S    + ++  +D
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 6e-08
 Identities = 37/215 (17%), Positives = 86/215 (40%), Gaps = 22/215 (10%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
              +  L + ++ +   +   L ++  +  N    +K V   I  L ++  L   G   L
Sbjct: 22  ETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KL 77

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS--ELDNLSDNIGNFKSF 209
               + L  +++L  + L    I +   SS +++K L++L      + +++  + +    
Sbjct: 78  TDI-KPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQL 133

Query: 210 EYMGAHGSAISQLPSLS--SGLVPLSAS--------LLSGLSLLYWLHLNNCALTSIPQE 259
           E +    + I+ +  LS  + L  LS           L+GL+ L  L+L+   ++ + + 
Sbjct: 134 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-RA 192

Query: 260 IGYLSSLEWLHLRGNNLEGLPAS-IKQISRLESLD 293
           +  L +L+ L L        P +    +    ++ 
Sbjct: 193 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 26/188 (13%), Positives = 58/188 (30%), Gaps = 36/188 (19%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
           ++T + L    + ++ + I+   N+K L IN        +  I  L +L  L   G    
Sbjct: 45  SLTYITLANINVTDL-TGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVT 101

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEY 211
                +L  +  L  +++  +   +   +    +  + ++      +LS N         
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI------DLSYN--------- 146

Query: 212 MGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL 271
                     +  +           L  L  L  L++    +    + I     L  L+ 
Sbjct: 147 --------GAITDIMP---------LKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYA 188

Query: 272 RGNNLEGL 279
               + G 
Sbjct: 189 FSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 18/202 (8%), Positives = 61/202 (30%), Gaps = 38/202 (18%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
                 L +++   +  +   + +L  + +     +  + T I    ++  L+       
Sbjct: 24  AYLNGLLGQSSTANI--TEAQMNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINN--IH 77

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEY 211
                 +  + +L ++ +    +T  +  +   +  L  L      ++S +         
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL------DISHS--------- 122

Query: 212 MGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL 271
                                  + ++ L  +  + L+     +    +  L  L+ L++
Sbjct: 123 ----------------AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNI 166

Query: 272 RGNNLEGLPASIKQISRLESLD 293
           + + +      I+   +L  L 
Sbjct: 167 QFDGVHDYRG-IEDFPKLNQLY 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 44/215 (20%), Positives = 73/215 (33%), Gaps = 37/215 (17%)

Query: 82  NLTDFP-HISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSICKLKS 139
           NLT  P  +  + T L+L E  +     +     T L  L ++R   L ++      L  
Sbjct: 21  NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDG-TLPV 78

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNL 199
           L  L       L+  P   + +  L  +++    +T     +   +  L+ L       L
Sbjct: 79  LGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL------YL 131

Query: 200 SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE 259
             N                  +L +L  GL       L+    L  L L N  LT +P  
Sbjct: 132 KGN------------------ELKTLPPGL-------LTPTPKLEKLSLANNNLTELPAG 166

Query: 260 I-GYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
           +   L +L+ L L+ N+L  +P        L    
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 38/184 (20%), Positives = 62/184 (33%), Gaps = 35/184 (19%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
            +T+L LD   + ++      L  L  L ++   +L+ +      L +L  L       L
Sbjct: 56  RLTQLNLDRAELTKLQVDGT-LPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RL 112

Query: 152 ERFPESL-EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFE 210
              P      +  L ++ L    +    P        LE L      +L++N        
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL------SLANN-------- 158

Query: 211 YMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLH 270
                      L  L +GL       L+GL  L  L L   +L +IP+       L +  
Sbjct: 159 ----------NLTELPAGL-------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201

Query: 271 LRGN 274
           L GN
Sbjct: 202 LHGN 205

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 34/200 (17%), Positives = 66/200 (33%), Gaps = 18/200 (9%)

Query: 96  LYLDETAIEEVPSSIKCLTNLKL--LRINRCTRLKRVSTSICKLKSLIALSAYGCLNLER 153
             L +   E           L    L + + T L+    S  +L+ L   + +  L +  
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 390

Query: 154 FPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMG 213
              +L+ + +  +     +T+    P     +  L +     L   S     +     + 
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS---KFLLENSVLKMEYADVRVLH 447

Query: 214 AHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRG 273
                ++ L  L              L L+  L L++  L ++P  +  L  LE L    
Sbjct: 448 LAHKDLTVLCHLEQ------------LLLVTHLDLSHNRLRALPPALAALRCLEVLQASD 495

Query: 274 NNLEGLPASIKQISRLESLD 293
           N LE +   +  + RL+ L 
Sbjct: 496 NALENVD-GVANLPRLQELL 514

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 8e-07
 Identities = 42/287 (14%), Positives = 90/287 (31%), Gaps = 46/287 (16%)

Query: 15  IKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVT 74
              +N  L   +              + +    E    DS   + L     ++   + + 
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ 365

Query: 75  IDFTSCINLTDF-PHISGNITRLYLDETAIEEVPS---SIKCLTNLKLLRINR--CTRLK 128
            +  SC  L +  P     +  + L   A++ +     +++  + LK +   R       
Sbjct: 366 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425

Query: 129 RVSTSICKLKSLIALSAYGCLNLER----FPESLEKMEHLNQINLGRTTITEQRPSSFEN 184
           R    +      +  +    L+L          LE++  +  ++L    +    P +   
Sbjct: 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAA 484

Query: 185 VKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLY 244
           ++ LE L        SDN               A+  +  +++            L  L 
Sbjct: 485 LRCLEVL------QASDN---------------ALENVDGVAN------------LPRLQ 511

Query: 245 WLHLNNCALTSIP--QEIGYLSSLEWLHLRGNNLEGLPASIKQISRL 289
            L L N  L      Q +     L  L+L+GN+L       ++++ +
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 36/222 (16%), Positives = 63/222 (28%), Gaps = 37/222 (16%)

Query: 79  SCINLTDFPH-ISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSI-C 135
               +T+ P  +  N   L    T +  +         +L+ + I++   L+ +   +  
Sbjct: 17  QESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 136 KLKSLIALSAYGCLNLERFPES-LEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS 194
            L  L  +      NL        + + +L  + +  T I         +      L   
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL--- 133

Query: 195 ELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLS-LLYWLHLNNCAL 253
              ++ DNI                  + ++             GLS     L LN   +
Sbjct: 134 ---DIQDNI-----------------NIHTIERNS-------FVGLSFESVILWLNKNGI 166

Query: 254 TSIPQEI-GYLSSLEWLHLRGNNLEGLPASI-KQISRLESLD 293
             I           E      NNLE LP  +    S    LD
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 62/208 (29%)

Query: 82  NLTDFP-HISGNITRLYLDETAIEEVPSSI--KCLTNLKLLRINRCTRLKRVSTSICKLK 138
            L + P  +      L L    +  + +      LTNL  L ++    L  +S       
Sbjct: 29  QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFIS------- 80

Query: 139 SLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDN 198
                            E+   + +L  ++L    +       F +++ LE L       
Sbjct: 81  ----------------SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL------L 118

Query: 199 LSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ 258
           L +N                   +  +              ++ L  L+L+   ++  P 
Sbjct: 119 LYNN------------------HIVVVDRNA-------FEDMAQLQKLYLSQNQISRFPV 153

Query: 259 EI----GYLSSLEWLHLRGNNLEGLPAS 282
           E+      L  L  L L  N L+ LP +
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 56/306 (18%), Positives = 98/306 (32%), Gaps = 49/306 (16%)

Query: 6   ESIFLNLSTIKGINLN---------LRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDS-- 54
            + F  L++++ + L             F NM    VL     ++    SI E+ L +  
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---SICEEDLLNFQ 178

Query: 55  -KGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCL 113
            K   +LR     L  ++   + +  C N    P  + +IT L L     +E  +     
Sbjct: 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGN----PFKNTSITTLDLSGNGFKESMAKRFFD 234

Query: 114 TNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT 173
                   +          S     +      +    LE           +   +L ++ 
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA--------SGVKTCDLSKSK 286

Query: 174 ITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSS------ 227
           I     S F +   LE L       L+ N       +      +A   L  L        
Sbjct: 287 IFALLKSVFSHFTDLEQL------TLAQN--EINKID-----DNAFWGLTHLLKLNLSQN 333

Query: 228 GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPASIKQI 286
            L  + + +   L  L  L L+   + ++  +    L +L+ L L  N L+ +P  I   
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI--F 391

Query: 287 SRLESL 292
            RL SL
Sbjct: 392 DRLTSL 397

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 33/220 (15%), Positives = 65/220 (29%), Gaps = 39/220 (17%)

Query: 82  NLTDFPHISGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSIC-KLKS 139
            L   P +  ++  + L   +I E+   S   L +L+ L++ + T    +  +    L S
Sbjct: 21  GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 140 LIALSAYGCLNLERFPES-LEKMEHLNQINLGRTTITEQ--RPSSFENVKGLETLGFSEL 196
           LI L         +        + +L  + L +  +       + F+ +  LE L     
Sbjct: 81  LIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML----- 134

Query: 197 DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSI 256
             L DN                   +  +         S    +   + L L    + SI
Sbjct: 135 -VLRDN------------------NIKKIQPA------SFFLNMRRFHVLDLTFNKVKSI 169

Query: 257 PQEIGY---LSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
            +E            L L    L+ +        +  +  
Sbjct: 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 36/224 (16%), Positives = 73/224 (32%), Gaps = 22/224 (9%)

Query: 92  NITRLYLDETAIEEVPSSI--KCLTNLKLLRINR------C----TRLKRVSTSICKLKS 139
           ++  L L +  I+++  +     +    +L +        C       +    ++ +L S
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNL 199
           +                +  K   +  ++L      E     F +      +    L N 
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 200 SDNI-----GNFKSFEYMGAHGSAISQLPSL---SSGLVPLSASLLSGLSLLYWLHLNNC 251
            +        NFK  +     G   S + +     S +  L  S+ S  + L  L L   
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

Query: 252 ALTSIPQEI-GYLSSLEWLHLRGNNLEGLPASI-KQISRLESLD 293
            +  I       L+ L  L+L  N L  + + + + + +LE LD
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 29/217 (13%)

Query: 79  SCINLTDFPHISG--NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICK 136
                     ++    +T L      I E+   +     L  L  +    + ++   + +
Sbjct: 156 HLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD--LNQ 210

Query: 137 LKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL 196
              L  L       L      +  +  L   +     +TE   S+      L TL   + 
Sbjct: 211 NIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQT 264

Query: 197 DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSI 256
           D L  ++ +     Y  A G    ++  L           ++  + LY L      +T +
Sbjct: 265 DLLEIDLTHNTQLIYFQAEG--CRKIKELD----------VTHNTQLYLLDCQAAGITEL 312

Query: 257 PQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
              +     L +L+L    L  L   +   ++L+SL 
Sbjct: 313 D--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLS 345

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 30/206 (14%), Positives = 65/206 (31%), Gaps = 19/206 (9%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
            + RL  D   I ++   +     L  L  +   +L  +   +  L  L          L
Sbjct: 192 LLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PL 245

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEY 211
                S   +  L  ++  +T + E   +    +   +  G  ++  L  ++ +      
Sbjct: 246 TELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYL 301

Query: 212 MGAHGSAISQLP-SLSSGLVPLSASL-------LSGLSLLYWLHLNNCALTSIPQEIGYL 263
           +    + I++L  S +  LV L  +        +S  + L  L   N  +      +G +
Sbjct: 302 LDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFS-SVGKI 360

Query: 264 SSLEWLHLRGNNLEGLPASIKQISRL 289
            +L            +P      + L
Sbjct: 361 PALNNNFEAEGQTITMPKETLTNNSL 386

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 50/279 (17%), Positives = 87/279 (31%), Gaps = 22/279 (7%)

Query: 24  AFSNMSNLRVLKFYIPEIS-------VHMSIEEQLLDSKGCKILRSFPSNLHFVSPVT-- 74
            F NMS L+ L      +         H++I + LL        +  P  L   +  +  
Sbjct: 110 EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

Query: 75  IDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSI 134
           I F +         +S   T   L+ + I+ V    KC   L +L   +        T  
Sbjct: 170 IVFPTNKEFHFILDVSVK-TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 135 CKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS 194
               +  +      L              ++ + L           S  ++K L      
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYF----SISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284

Query: 195 ELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALT 254
                      ++ F  M      +S    +            S +S    L  +N  LT
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML-------CPSKISPFLHLDFSNNLLT 337

Query: 255 SIPQEI-GYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292
               E  G+L+ LE L L+ N L+ L    +  ++++SL
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 36/222 (16%), Positives = 68/222 (30%), Gaps = 43/222 (19%)

Query: 82  NLTDFPH-ISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSIC-KLK 138
           N    P  +  +   L L    +  + S        L++L ++RC  ++ +       L 
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS 76

Query: 139 SLIALSAYGCLN-LERFPESL-EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL 196
            L  L   G  N ++         +  L ++    T +         ++K L+ L     
Sbjct: 77  HLSTLILTG--NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL----- 129

Query: 197 DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSI 256
            N++ N                   + S             S L+ L  L L++  + SI
Sbjct: 130 -NVAHN------------------LIQSFKL------PEYFSNLTNLEHLDLSSNKIQSI 164

Query: 257 PQEI-GYLSSLEW----LHLRGNNLEGLPASIKQISRLESLD 293
                  L  +      L L  N +  +     +  RL+ L 
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 43/202 (21%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
           N  +  L + ++ ++  S K L+ ++    +  + ++ ++  +    +L  L       +
Sbjct: 20  NAVKQNLGKQSVTDL-VSQKELSGVQNFNGD-NSNIQSLA-GMQFFTNLKELHLSHN-QI 75

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEY 211
                 L+ +  L ++++ R  +         N+ G+ +   S L  L +N         
Sbjct: 76  SDL-SPLKDLTKLEELSVNRNRLK--------NLNGIPSACLSRL-FLDNN--------- 116

Query: 212 MGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL 271
                    +L    S         L  L  L  L + N  L SI   +G+LS LE L L
Sbjct: 117 ---------ELRDTDS---------LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDL 157

Query: 272 RGNNLEGLPASIKQISRLESLD 293
            GN +      + ++ ++  +D
Sbjct: 158 HGNEITNTG-GLTRLKKVNWID 178

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 36/204 (17%), Positives = 84/204 (41%), Gaps = 24/204 (11%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
              +  L + ++ +   +   L ++  +  N    +K V   I  L ++  L   G  N 
Sbjct: 25  ETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNG--NK 79

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS--ELDNLSDNIGNFKSF 209
               + L  +++L  + L    + +   SS +++K L++L      + +++  + +    
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQL 136

Query: 210 EYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWL 269
           E +    + I+ +  LS             L+ L  L L +  ++ I   +  L+ L+ L
Sbjct: 137 ESLYLGNNKITDITVLSR------------LTKLDTLSLEDNQISDIV-PLAGLTKLQNL 183

Query: 270 HLRGNNLEGLPASIKQISRLESLD 293
           +L  N++  L A +  +  L+ L+
Sbjct: 184 YLSKNHISDLRA-LAGLKNLDVLE 206

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 36/205 (17%), Positives = 87/205 (42%), Gaps = 25/205 (12%)

Query: 82  NLTDFPHISG--NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKS 139
           ++TD    +   +I ++  + + I+ V   I+ L N+  L +N   +L  +   +  LK+
Sbjct: 35  SVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNG-NKLTDIK-PLANLKN 91

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS--ELD 197
           L  L       ++    SL+ ++ L  ++L    I++   +   ++  LE+L     ++ 
Sbjct: 92  LGWLFLDEN-KVKDL-SSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT 147

Query: 198 NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP 257
           +++  +      + +    + IS +  L+            GL+ L  L+L+   ++ + 
Sbjct: 148 DIT-VLSRLTKLDTLSLEDNQISDIVPLA------------GLTKLQNLYLSKNHISDL- 193

Query: 258 QEIGYLSSLEWLHLRGNNLEGLPAS 282
           + +  L +L+ L L        P +
Sbjct: 194 RALAGLKNLDVLELFSQECLNKPIN 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 32/117 (27%)

Query: 168 NLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSS 227
           +L    ++     +F  +  L  L       L+DN                  +L +L +
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLL------YLNDN------------------KLQTLPA 78

Query: 228 GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPASI 283
           G+          L  L  L + +  L ++P  +   L +L  L L  N L+ LP  +
Sbjct: 79  GI-------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV 128

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 40/216 (18%)

Query: 82  NLTDFP-HISGNITRLYLDETAIEEVPSSI-KCLTNLKLLRINRCTRLKRVSTSIC-KLK 138
            LT  P +I  +  +L L    +  +PS     LT L+LL +N   +L+ +   I  +LK
Sbjct: 27  KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELK 85

Query: 139 SLIALSAYGCLNLERFPESL-EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELD 197
           +L  L       L+  P  + +++ +L ++ L R  +    P  F+++  L  L      
Sbjct: 86  NLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL------ 138

Query: 198 NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP 257
           +L  N                  +L SL  G+          L+ L  L L N  L  +P
Sbjct: 139 SLGYN------------------ELQSLPKGV-------FDKLTSLKELRLYNNQLKRVP 173

Query: 258 QEI-GYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292
           +     L+ L+ L L  N L+ +P        LE L
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGA--FDSLEKL 207

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 229 LVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPASIKQIS 287
           L  L    L GL  L  L +    L  +  +   +   L  L+L  N LE L     Q  
Sbjct: 44  LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103

Query: 288 RLESL 292
            L+ L
Sbjct: 104 SLQEL 108

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 32/128 (25%)

Query: 150 NLERFPESLEKMEHLNQINL-GRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKS 208
                   L   E+L ++ +  +  +          +  L  L       +  +      
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL------TIVKS------ 66

Query: 209 FEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEW 268
                              GL  ++         L  L+L+  AL S+  +     SL+ 
Sbjct: 67  -------------------GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107

Query: 269 LHLRGNNL 276
           L L GN L
Sbjct: 108 LVLSGNPL 115

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 34/131 (25%)

Query: 163 HLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQL 222
            L +IN     IT+    +FE   G+  +       L+ N                  +L
Sbjct: 58  QLRKINFSNNKITDIEEGAFEGASGVNEI------LLTSN------------------RL 93

Query: 223 PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPA 281
            ++   +         GL  L  L L +  +T +  +    LSS+  L L  N +  +  
Sbjct: 94  ENVQHKM-------FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

Query: 282 SIKQISRLESL 292
                  L SL
Sbjct: 147 GA--FDTLHSL 155

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 32/196 (16%), Positives = 60/196 (30%), Gaps = 59/196 (30%)

Query: 83  LTDFP-HISGNITRLYLDETAIEEVPSS--IKCLTNLKLLRINRCTRLKRVSTSICKLKS 139
           L   P HI      L L+      + ++   K L  L+ +  +             K+  
Sbjct: 23  LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-----------KITD 71

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNL 199
           +                + E    +N+I L    +   +   F+ ++ L+TL       L
Sbjct: 72  I-------------EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL------ML 112

Query: 200 SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE 259
             N                  ++  + +           GLS +  L L +  +T++   
Sbjct: 113 RSN------------------RITCVGNDS-------FIGLSSVRLLSLYDNQITTVAPG 147

Query: 260 I-GYLSSLEWLHLRGN 274
               L SL  L+L  N
Sbjct: 148 AFDTLHSLSTLNLLAN 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 33/129 (25%)

Query: 167 INLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLS 226
           I L + TI    P +F   K L  +      +LS+N                  Q+  L+
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRI------DLSNN------------------QISELA 72

Query: 227 SGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNNLEGLPASI-K 284
                       GL  L  L L    +T +P+ +   L SL+ L L  N +  L     +
Sbjct: 73  PDA-------FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ 125

Query: 285 QISRLESLD 293
            +  L  L 
Sbjct: 126 DLHNLNLLS 134

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 25/220 (11%)

Query: 82  NLTDFPHISG--NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKS 139
            +T    +    N+  L L +  I ++ + +K LT +  L ++    LK VS +I  L+S
Sbjct: 52  GVTTIEGVQYLNNLIGLELKDNQITDL-APLKNLTKITELELSGN-PLKNVS-AIAGLQS 108

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS--ELD 197
           +  L              L  + +L  + L    IT    S    +  L+ L     ++ 
Sbjct: 109 IKTLDLTS--TQITDVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS 164

Query: 198 NLSDNIGNFKSFEYMGAHGSAISQLPSLSS--GLVPLSASL--------LSGLSLLYWLH 247
           +L+  + N      + A  + IS +  L+S   L+ +            L+  S L+ + 
Sbjct: 165 DLT-PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVT 223

Query: 248 LNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQIS 287
           L N  +T+ P        +  +        G P +   IS
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNVV---KGPSGAPIAPATIS 260

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 44/291 (15%), Positives = 96/291 (32%), Gaps = 29/291 (9%)

Query: 24  AFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINL 83
           + + + +L++    + + +    +      ++G  +L     ++      ++        
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275

Query: 84  TDFPHISGNITRLYLDETAIEEVPSSIKC-LTNLKLLRINRCTRLKRVSTSICKLKSLIA 142
               ++  NI  L + E    E  +  +  L +L +  +     L            +  
Sbjct: 276 RPVEYL--NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 143 LSAYG---CLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS--ELD 197
                          P S      LN     +   T+        +K L+TL      L 
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLN---FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 198 NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSL--------------- 242
           N        K+   +     +++ L S +       A  +  L+L               
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450

Query: 243 -LYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292
            +  L L+N  + SIP+++ +L +L+ L++  N L+ +P  +    RL SL
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV--FDRLTSL 499

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 41/280 (14%), Positives = 82/280 (29%), Gaps = 45/280 (16%)

Query: 6   ESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPS 65
           +             +      N++    +       S        +   K    L S  +
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 66  NLHFVSPVTIDFTSCINLTDFP----HISGNITRLYLDETAIEEVPSSI-KCLTNLKLLR 120
                + + I   S  +             + T L   +    +        L  L+ L 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 121 I--NRCTRLKRVSTSICKLKSLIALS-AYGCLNLERFPESLEKMEHLNQINLGRTTITEQ 177
           +  N      +V+     + SL  L  +   LN   +  +    E +  +NL    +T  
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG- 442

Query: 178 RPSSFEN-VKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL 236
             S F      ++ L      +L +N                  ++ S+   +  L A  
Sbjct: 443 --SVFRCLPPKVKVL------DLHNN------------------RIMSIPKDVTHLQA-- 474

Query: 237 LSGLSLLYWLHLNNCALTSIPQEI-GYLSSLEWLHLRGNN 275
                 L  L++ +  L S+P  +   L+SL+++ L  N 
Sbjct: 475 ------LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.86
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.71
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.41
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.39
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.88
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.99
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.97
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.71
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.2

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-31  Score=252.66  Aligned_cols=212  Identities=17%  Similarity=0.168  Sum_probs=138.0

Q ss_pred             ecCcccceeechhhccCCccccEEEEeccceeee-c-c-c----ceEEEeccCCcccccCCCC-----------------
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVH-M-S-I----EEQLLDSKGCKILRSFPSN-----------------   66 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~-~----~l~~L~l~~~~~~~~~~~~-----------------   66 (293)
                      ++++|......+..|..+++|++|++++|.+... + . +    .|++|++++|.+.+.+|..                 
T Consensus       300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~  379 (768)
T 3rgz_A          300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN  379 (768)
T ss_dssp             ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred             ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence            6666655555555566666666666666555411 1 1 1    1555555555544444433                 


Q ss_pred             --------CC---CcCceEEeecCCcCCcccCCCC---CCccEEeccccccc-ccCccccCCCCCCEEEeccCccccccc
Q 039599           67 --------LH---FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIE-EVPSSIKCLTNLKLLRINRCTRLKRVS  131 (293)
Q Consensus        67 --------~~---~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~  131 (293)
                              +.   ..+|++|++++|.+.+.+|..+   .+|++|++++|.+. .+|..+..+++|++|++++|.+.+..|
T Consensus       380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  459 (768)
T 3rgz_A          380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP  459 (768)
T ss_dssp             EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence                    32   2255666666665444444432   35666677777664 556666777777777777777666667


Q ss_pred             cccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccc
Q 039599          132 TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKS  208 (293)
Q Consensus       132 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~  208 (293)
                      ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|   +.+|..+..+++
T Consensus       460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  539 (768)
T 3rgz_A          460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS  539 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred             HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence            77777777777777777777777777777888888888888887777777777888888888877   467777778888


Q ss_pred             cceecccCCCccCC
Q 039599          209 FEYMGAHGSAISQL  222 (293)
Q Consensus       209 L~~L~l~~~~~~~~  222 (293)
                      |+.+++++|.+.+.
T Consensus       540 L~~L~Ls~N~l~g~  553 (768)
T 3rgz_A          540 LIWLDLNTNLFNGT  553 (768)
T ss_dssp             CCEEECCSSEEESB
T ss_pred             CCEEECCCCccCCc
Confidence            88888888877643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.8e-32  Score=254.74  Aligned_cols=234  Identities=18%  Similarity=0.304  Sum_probs=189.0

Q ss_pred             eEEEeccCCcccccCCCCCCC-cCceEEeecCCcCCcccCCCC---CCccEEeccccccc-ccCccccCCCCCCEEEecc
Q 039599           49 EQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIE-EVPSSIKCLTNLKLLRINR  123 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~  123 (293)
                      +++|++++|.+.+.+|..+.. ++|++|++++|.+.+.+|..+   .+|++|++++|.+. .+|..+..+++|++|++++
T Consensus       396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  475 (768)
T 3rgz_A          396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF  475 (768)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence            677777777777677776654 499999999998766777543   57889999999986 7788888999999999999


Q ss_pred             CccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---cccc
Q 039599          124 CTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLS  200 (293)
Q Consensus       124 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~  200 (293)
                      |.+.+..|..+..+++|++|++++|.+.+.+|.++..+++|++|++++|.+++.+|..+..+++|+.|++++|   +.+|
T Consensus       476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            9988888888899999999999999888899999999999999999999998889989999999999999988   3444


Q ss_pred             ccc----------------------------------------------------------------------cCccccc
Q 039599          201 DNI----------------------------------------------------------------------GNFKSFE  210 (293)
Q Consensus       201 ~~~----------------------------------------------------------------------~~l~~L~  210 (293)
                      ..+                                                                      ..++.|+
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~  635 (768)
T 3rgz_A          556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM  635 (768)
T ss_dssp             GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred             hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence            433                                                                      2345677


Q ss_pred             eecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCC-CchhHhhcc
Q 039599          211 YMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQIS  287 (293)
Q Consensus       211 ~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~  287 (293)
                      .|++++|.+++. |.           .++.++.|+.|++++|.+++ +|..++.+++|+.||+++|++++ +|..+..++
T Consensus       636 ~LdLs~N~l~g~ip~-----------~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          636 FLDMSYNMLSGYIPK-----------EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             EEECCSSCCBSCCCG-----------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred             EEECcCCcccccCCH-----------HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence            788888877765 54           35677778888888888875 78778888888888888888885 777787777


Q ss_pred             cCCCCC
Q 039599          288 RLESLD  293 (293)
Q Consensus       288 ~L~~ld  293 (293)
                      +|+.||
T Consensus       705 ~L~~L~  710 (768)
T 3rgz_A          705 MLTEID  710 (768)
T ss_dssp             CCSEEE
T ss_pred             CCCEEE
Confidence            777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=8e-31  Score=233.02  Aligned_cols=276  Identities=16%  Similarity=0.183  Sum_probs=181.8

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEecccee--eec-ccc----eEEEeccCCcccccCCCCCCC-cCceEE
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEIS--VHM-SIE----EQLLDSKGCKILRSFPSNLHF-VSPVTI   75 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~-~~~----l~~L~l~~~~~~~~~~~~~~~-~~L~~L   75 (293)
                      +++.+  |+++|....+.+..|..+++|++|++++|.+.  .++ .+.    |++|++++|.+.+..|..+.. .+|++|
T Consensus        31 ~l~~L--~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           31 HVNYV--DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TCCEE--ECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             ccCEE--EecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            45555  99999998888889999999999999999774  222 222    999999999988777877764 499999


Q ss_pred             eecCCcCCcccC-----CCCCCccEEeccccccccc-Ccc-ccCCCCCCEEEeccCccccccccccccc-----------
Q 039599           76 DFTSCINLTDFP-----HISGNITRLYLDETAIEEV-PSS-IKCLTNLKLLRINRCTRLKRVSTSICKL-----------  137 (293)
Q Consensus        76 ~l~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~l-~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l-----------  137 (293)
                      ++++|.+.+.+|     ..+.+|++|++++|.+..+ |.. +..+++|++|++++|.+.+..+..+..+           
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            999999655333     2356899999999999877 444 7899999999999998776655544433           


Q ss_pred             -----------------------cccceecccccccCCCCChhhhc----------------------------------
Q 039599          138 -----------------------KSLIALSAYGCLNLERFPESLEK----------------------------------  160 (293)
Q Consensus       138 -----------------------~~L~~L~l~~~~~~~~~~~~~~~----------------------------------  160 (293)
                                             ++|++|++++|.+.+..+..+..                                  
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence                                   45677777766554333222211                                  


Q ss_pred             -----cccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCccCC-CCcCCCCcc
Q 039599          161 -----MEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVP  231 (293)
Q Consensus       161 -----l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~  231 (293)
                           .++|++|++++|.+.+..+..+..+++|+.|++++|   +..+..+..+++|++|++++|.+.++ |.       
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------  341 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR-------  341 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-------
T ss_pred             cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh-------
Confidence                 135666666666665555556666666666666666   22344556666666666666666555 22       


Q ss_pred             CcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCCch-hHhhcccCCCC
Q 039599          232 LSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESL  292 (293)
Q Consensus       232 l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p~-~l~~l~~L~~l  292 (293)
                          .+..+++|++|++++|.+++ .|.++..+++|+.|++++|+++++|+ .+..+++|+.|
T Consensus       342 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  400 (455)
T 3v47_A          342 ----MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI  400 (455)
T ss_dssp             ----GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             ----HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEE
Confidence                13445555555555555555 24445555555555555555555443 23445555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=2.2e-30  Score=239.10  Aligned_cols=242  Identities=16%  Similarity=0.205  Sum_probs=138.5

Q ss_pred             eEEEeccCCccccc-----------------CCCCCC---CcCceEEeecCCcCCcccCCCCC---CccEEeccccc-cc
Q 039599           49 EQLLDSKGCKILRS-----------------FPSNLH---FVSPVTIDFTSCINLTDFPHISG---NITRLYLDETA-IE  104 (293)
Q Consensus        49 l~~L~l~~~~~~~~-----------------~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~-~~  104 (293)
                      |++|++++|.+.+.                 +|..++   +.+|++|++++|.+.+.+|..+.   +|++|++++|. +.
T Consensus       208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~  287 (636)
T 4eco_A          208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS  287 (636)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred             CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence            67777777765553                 666655   33677777777766666665432   45555666665 43


Q ss_pred             --ccCccccCC------CCCCEEEeccCcccccccc--ccccccccceecccccccCC----------------------
Q 039599          105 --EVPSSIKCL------TNLKLLRINRCTRLKRVST--SICKLKSLIALSAYGCLNLE----------------------  152 (293)
Q Consensus       105 --~l~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~----------------------  152 (293)
                        .+|..++.+      ++|++|++++|.+. .+|.  .+..+++|++|++++|.+.+                      
T Consensus       288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             HHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE
T ss_pred             cccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc
Confidence              244444333      45555555554443 3444  44444444544444444443                      


Q ss_pred             CCChhhhcccc-CCceecCCCcccccCCCcccccc--cCceecCCCC---cccccccc-------CccccceecccCCCc
Q 039599          153 RFPESLEKMEH-LNQINLGRTTITEQRPSSFENVK--GLETLGFSEL---DNLSDNIG-------NFKSFEYMGAHGSAI  219 (293)
Q Consensus       153 ~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~~---~~l~~~~~-------~l~~L~~L~l~~~~~  219 (293)
                      .+|..+..+++ |++|++++|.++ .+|..+....  +|+.|++++|   +..|..+.       .+++|++|++++|.+
T Consensus       367 ~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l  445 (636)
T 4eco_A          367 EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI  445 (636)
T ss_dssp             ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred             cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence            44444555555 555555555554 4444443332  5556665555   22333444       455667777777766


Q ss_pred             cCCCC-cC---CCCccCcccc----------cC-------CccccceeecCCccCCcCCcccC--CCCCCcEEeccCCcC
Q 039599          220 SQLPS-LS---SGLVPLSASL----------LS-------GLSLLYWLHLNNCALTSIPQEIG--YLSSLEWLHLRGNNL  276 (293)
Q Consensus       220 ~~~~~-l~---~~l~~l~~~~----------~~-------~~~~L~~L~l~~n~i~~l~~~~~--~~~~L~~L~l~~n~l  276 (293)
                      ..+|. +.   +.++.|+++.          +.       .+++|++|++++|.++.+|..+.  .+++|+.|++++|++
T Consensus       446 ~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l  525 (636)
T 4eco_A          446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF  525 (636)
T ss_dssp             CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred             CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC
Confidence            66654 21   4455555431          11       12277888888887777777765  778888888888888


Q ss_pred             CCCchhHhhcccCCCC
Q 039599          277 EGLPASIKQISRLESL  292 (293)
Q Consensus       277 ~~~p~~l~~l~~L~~l  292 (293)
                      +++|..+..+++|+.|
T Consensus       526 ~~ip~~~~~l~~L~~L  541 (636)
T 4eco_A          526 SKFPTQPLNSSTLKGF  541 (636)
T ss_dssp             SSCCCGGGGCSSCCEE
T ss_pred             CCcChhhhcCCCCCEE
Confidence            7777777777777665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=3.5e-29  Score=230.13  Aligned_cols=273  Identities=16%  Similarity=0.202  Sum_probs=229.6

Q ss_pred             EeecCcccceeechhhccCCccccEEEEeccceeeec-cc----ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcC
Q 039599            9 FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM-SI----EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCIN   82 (293)
Q Consensus         9 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~----~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~   82 (293)
                      .+++++|....+++..|..+++|++|++++|.+...+ .+    .|++|++++|.+.+..|..+. +++|++|++++|.+
T Consensus       258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence            3499999888898888999999999999999887332 22    299999999988776666654 45999999999987


Q ss_pred             CcccCCC----CCCccEEeccccccccc---CccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC
Q 039599           83 LTDFPHI----SGNITRLYLDETAIEEV---PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP  155 (293)
Q Consensus        83 ~~~~~~~----~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  155 (293)
                      ...+|..    +.+|++|++++|.+...   +..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence            7666543    45899999999998765   5678999999999999998887778888899999999999998877655


Q ss_pred             h-hhhccccCCceecCCCcccccCCCcccccccCceecCCCC---c-cc--cccccCccccceecccCCCccCC-CCcCC
Q 039599          156 E-SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---D-NL--SDNIGNFKSFEYMGAHGSAISQL-PSLSS  227 (293)
Q Consensus       156 ~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~-~l--~~~~~~l~~L~~L~l~~~~~~~~-~~l~~  227 (293)
                      . .+..+++|++|++++|.+.+..+..+..+++|++|++++|   + .+  +..+..+++|++|++++|.+.+. |.   
T Consensus       418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---  494 (606)
T 3t6q_A          418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH---  494 (606)
T ss_dssp             CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT---
T ss_pred             chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh---
Confidence            4 4889999999999999998888888999999999999999   2 12  24678899999999999999887 44   


Q ss_pred             CCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCC-CchhHhhcccCCCCC
Q 039599          228 GLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESLD  293 (293)
Q Consensus       228 ~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~L~~ld  293 (293)
                              .++.+++|++|++++|.+++ .|.++..++.| .|++++|++++ .|..+..+++|+.+|
T Consensus       495 --------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~  553 (606)
T 3t6q_A          495 --------AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN  553 (606)
T ss_dssp             --------TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred             --------hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence                    36788999999999999988 67789999999 99999999998 556678888887653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=3.5e-29  Score=223.84  Aligned_cols=272  Identities=15%  Similarity=0.178  Sum_probs=142.4

Q ss_pred             ecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCC
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINL   83 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~   83 (293)
                      |+++|....+.+..|..+++|++|++++|.+....  .+.    |++|++++|.+....+..+. +.+|++|++++|.+.
T Consensus        38 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~  117 (477)
T 2id5_A           38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV  117 (477)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence            55555555555555555555555555555544221  111    55555555543322222222 235555555555533


Q ss_pred             cccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhh
Q 039599           84 TDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLE  159 (293)
Q Consensus        84 ~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  159 (293)
                      ...+..   +.+|++|++++|.+..+++ .+.++++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+.
T Consensus       118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~  197 (477)
T 2id5_A          118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK  197 (477)
T ss_dssp             EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred             cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence            332322   2345555555555543332 445555555555555544433333344555555555555544443344455


Q ss_pred             ccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccCCCCcCCCCccCcccc
Q 039599          160 KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL  236 (293)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~  236 (293)
                      .+++|++|++++|...+.++.......+|+.|++++|  ..++ ..+..+++|++|++++|.+.+++.          ..
T Consensus       198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------~~  267 (477)
T 2id5_A          198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG----------SM  267 (477)
T ss_dssp             SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT----------TS
T ss_pred             cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh----------hh
Confidence            5555555555555444444443333345555555555  2232 234455555555555555554422          02


Q ss_pred             cCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCCch-hHhhcccCCCC
Q 039599          237 LSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESL  292 (293)
Q Consensus       237 ~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p~-~l~~l~~L~~l  292 (293)
                      +..+++|++|++++|.+++ .|.++..+++|+.|++++|+++++|+ .+..+++|+.|
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  325 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL  325 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred             ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence            5567778888888887777 45667777888888888888877554 34566666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=9.8e-29  Score=225.24  Aligned_cols=135  Identities=19%  Similarity=0.261  Sum_probs=111.9

Q ss_pred             hccccCCceecCCCcccccCCCcccccccCceecCCCC--c---cccccccCccccceecccCCCccC-CCC-cC---CC
Q 039599          159 EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--D---NLSDNIGNFKSFEYMGAHGSAISQ-LPS-LS---SG  228 (293)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~---~l~~~~~~l~~L~~L~l~~~~~~~-~~~-l~---~~  228 (293)
                      ..+++|++|++++|.+++..|..+..+++|+.|++++|  .   .++..+..+++|++|++++|.+.+ +|. ..   +.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            56788999999999998888888999999999999998  3   345668899999999999999988 554 22   56


Q ss_pred             CccCcccc-------cCCc-cccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchh-HhhcccCCCCC
Q 039599          229 LVPLSASL-------LSGL-SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPAS-IKQISRLESLD  293 (293)
Q Consensus       229 l~~l~~~~-------~~~~-~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~-l~~l~~L~~ld  293 (293)
                      ++.|+++.       +..+ ++|++|++++|.++.+|..+..+++|+.|++++|+++++|+. +..+++|+.+|
T Consensus       430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred             CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence            66666542       2233 689999999999999998888999999999999999999887 88888888764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=2e-28  Score=210.10  Aligned_cols=275  Identities=20%  Similarity=0.219  Sum_probs=182.5

Q ss_pred             eEEEEeecCcccceeechhhccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecCC
Q 039599            5 IESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSC   80 (293)
Q Consensus         5 ~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~   80 (293)
                      ++.+  +++++....++  .+..+++|++|++++|.+...+.+.    |++|++++|.+.. ++....+++|++|++++|
T Consensus        46 L~~L--~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           46 ITKL--VVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNED  120 (347)
T ss_dssp             CSEE--ECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECTTS
T ss_pred             ccEE--EEeCCccccch--hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-chHHcCCCcCCEEECcCC
Confidence            3444  77777666665  4777888888888888776443333    8888888886443 343334558888888887


Q ss_pred             cCCcccC--CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhh
Q 039599           81 INLTDFP--HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESL  158 (293)
Q Consensus        81 ~~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  158 (293)
                      .+ ..++  ..+.+|++|++++|.....++.+..+++|++|++++|......+  +..+++|++|++++|.+.+ ++. +
T Consensus       121 ~i-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~  195 (347)
T 4fmz_A          121 NI-SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-L  195 (347)
T ss_dssp             CC-CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-G
T ss_pred             cc-cCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-c
Confidence            73 3333  23457777787777554444457777777777777776544322  5677777777777775543 222 5


Q ss_pred             hccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcC--CCCccCcc
Q 039599          159 EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLS--SGLVPLSA  234 (293)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~  234 (293)
                      ..+++|+++++++|.+.+..+  +..+++|+.|++++|  ..++. +..+++|++|++++|.+.+++.+.  +.++.|++
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l  272 (347)
T 4fmz_A          196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNV  272 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEc
Confidence            666667777777766644322  556666667766666  33333 556666666666666666553321  34444443


Q ss_pred             c--------ccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599          235 S--------LLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       235 ~--------~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      +        .+..+++|++|++++|.+++ .+..+..+++|+.|++++|+++++++ +..+++|+.+|
T Consensus       273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~  339 (347)
T 4fmz_A          273 GSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSAD  339 (347)
T ss_dssp             CSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEES
T ss_pred             cCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceee
Confidence            2        26678899999999999987 55678889999999999999999776 78888888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=6.6e-29  Score=224.29  Aligned_cols=135  Identities=19%  Similarity=0.299  Sum_probs=110.7

Q ss_pred             hccccCCceecCCCcccccCCCcccccccCceecCCCC--c---cccccccCccccceecccCCCccC-CCC--c--CCC
Q 039599          159 EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--D---NLSDNIGNFKSFEYMGAHGSAISQ-LPS--L--SSG  228 (293)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~---~l~~~~~~l~~L~~L~l~~~~~~~-~~~--l--~~~  228 (293)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|  .   .++..+..+++|++|++++|.+.+ +|.  +  .+.
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            56788999999999998878888899999999999998  3   455678899999999999999988 553  2  256


Q ss_pred             CccCcccc-------cCCc-cccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchh-HhhcccCCCCC
Q 039599          229 LVPLSASL-------LSGL-SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPAS-IKQISRLESLD  293 (293)
Q Consensus       229 l~~l~~~~-------~~~~-~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~-l~~l~~L~~ld  293 (293)
                      ++.|+++.       ...+ ++|+.|++++|.++.+|..+..+++|+.|++++|+++++|.. +..+++|+.+|
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE
Confidence            77766642       1222 689999999999999998888999999999999999998876 77788887653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.2e-29  Score=214.69  Aligned_cols=232  Identities=19%  Similarity=0.241  Sum_probs=186.7

Q ss_pred             ceEEEeccCCcccc--cCCCCCCC-cCceEEeecC-CcCCcccCCC---CCCccEEeccccccc-ccCccccCCCCCCEE
Q 039599           48 EEQLLDSKGCKILR--SFPSNLHF-VSPVTIDFTS-CINLTDFPHI---SGNITRLYLDETAIE-EVPSSIKCLTNLKLL  119 (293)
Q Consensus        48 ~l~~L~l~~~~~~~--~~~~~~~~-~~L~~L~l~~-~~~~~~~~~~---~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L  119 (293)
                      .++.|++++|.+.+  .+|..+.. ++|++|++++ |.+.+.+|..   +.+|++|++++|.+. .+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            47778888887766  66766654 4899999985 7666666654   457888899998886 777788888999999


Q ss_pred             EeccCccccccccccccccccceecccccccCCCCChhhhccc-cCCceecCCCcccccCCCcccccccCceecCCCC--
Q 039599          120 RINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKME-HLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--  196 (293)
Q Consensus       120 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--  196 (293)
                      ++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++..|..+..++ |+.|++++|  
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            9999888777888888889999999999888778888888887 889999999988878888887776 999999888  


Q ss_pred             -ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCC
Q 039599          197 -DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGN  274 (293)
Q Consensus       197 -~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n  274 (293)
                       +..+..+..+++|+.|++++|.+.+.+.           .+..+++|++|++++|.+++ +|.++..+++|+.|++++|
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-----------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-----------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecC-----------cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence             4567778888899999999998876522           14567888999999998885 8888888999999999999


Q ss_pred             cCCC-CchhHhhcccCCCC
Q 039599          275 NLEG-LPASIKQISRLESL  292 (293)
Q Consensus       275 ~l~~-~p~~l~~l~~L~~l  292 (293)
                      ++++ +|.. ..+++|+.+
T Consensus       279 ~l~~~ip~~-~~l~~L~~l  296 (313)
T 1ogq_A          279 NLCGEIPQG-GNLQRFDVS  296 (313)
T ss_dssp             EEEEECCCS-TTGGGSCGG
T ss_pred             cccccCCCC-ccccccChH
Confidence            9886 7764 667777655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=2.5e-29  Score=232.07  Aligned_cols=248  Identities=13%  Similarity=0.126  Sum_probs=152.1

Q ss_pred             eecCcccceeechhhccCCccccEEEEeccc-eee---ec---c-------cceEEEeccCCcccccCCC--CCC-CcCc
Q 039599           10 LNLSTIKGINLNLRAFSNMSNLRVLKFYIPE-ISV---HM---S-------IEEQLLDSKGCKILRSFPS--NLH-FVSP   72 (293)
Q Consensus        10 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~---~~---~-------~~l~~L~l~~~~~~~~~~~--~~~-~~~L   72 (293)
                      +++++|......+..|.++++|++|++++|. +..   +.   .       -.|++|++++|.+. .+|.  .++ +++|
T Consensus       254 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L  332 (636)
T 4eco_A          254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL  332 (636)
T ss_dssp             EEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC
T ss_pred             EEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCC
Confidence            3777777666666678888888888888887 543   11   1       23788888888766 6676  444 3478


Q ss_pred             eEEeecCCcCCcccCCCCC---CccEEecccccccccCccccCCCC-CCEEEeccCcccccccccccccc--ccceeccc
Q 039599           73 VTIDFTSCINLTDFPHISG---NITRLYLDETAIEEVPSSIKCLTN-LKLLRINRCTRLKRVSTSICKLK--SLIALSAY  146 (293)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~  146 (293)
                      ++|++++|.+.+.+| .+.   +|++|++++|.+..+|..+..+++ |++|++++|.+. .+|..+..+.  +|++|+++
T Consensus       333 ~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls  410 (636)
T 4eco_A          333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFS  410 (636)
T ss_dssp             CEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECC
T ss_pred             CEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECc
Confidence            888888887555776 443   566777777777777777777777 777777777655 5565554433  67777777


Q ss_pred             ccccCCCCChhhh-------ccccCCceecCCCcccccCCCc-ccccccCceecCCCC--ccccccccC--------ccc
Q 039599          147 GCLNLERFPESLE-------KMEHLNQINLGRTTITEQRPSS-FENVKGLETLGFSEL--DNLSDNIGN--------FKS  208 (293)
Q Consensus       147 ~~~~~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~~--~~l~~~~~~--------l~~  208 (293)
                      +|.+.+..|..+.       .+++|++|++++|.++ .+|.. +..+++|+.|++++|  ..++.....        +++
T Consensus       411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~  489 (636)
T 4eco_A          411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL  489 (636)
T ss_dssp             SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred             CCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence            7766666666555       5566777777777665 33433 334666666666666  333332222        226


Q ss_pred             cceecccCCCccCCCC-cCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEec
Q 039599          209 FEYMGAHGSAISQLPS-LSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL  271 (293)
Q Consensus       209 L~~L~l~~~~~~~~~~-l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l  271 (293)
                      |++|++++|.+..+|. +.          ...+++|++|++++|.++++|..+..+++|+.|++
T Consensus       490 L~~L~Ls~N~l~~lp~~~~----------~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          490 LTSIDLRFNKLTKLSDDFR----------ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             CCEEECCSSCCCBCCGGGS----------TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred             ccEEECcCCcCCccChhhh----------hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence            6666666666665544 11          01344444444444444444444444444444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=2.7e-28  Score=224.15  Aligned_cols=255  Identities=17%  Similarity=0.164  Sum_probs=210.7

Q ss_pred             hccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccC-CCCCCccEEec
Q 039599           24 AFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFP-HISGNITRLYL   98 (293)
Q Consensus        24 ~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l   98 (293)
                      .+..+++|+.|+++++.+...+.+.    +++|++++|.+ +.+|.. .+++|+.|++++|.....++ ..+.+|++|++
T Consensus       280 ~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  357 (606)
T 3vq2_A          280 KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDL  357 (606)
T ss_dssp             SCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEEC
T ss_pred             ccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEEC
Confidence            3888999999999999887544333    99999999987 778855 77799999999997565553 24568999999


Q ss_pred             cccccccc---CccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC-hhhhccccCCceecCCCcc
Q 039599           99 DETAIEEV---PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKMEHLNQINLGRTTI  174 (293)
Q Consensus        99 ~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~  174 (293)
                      ++|.+...   +..+..+++|++|++++|.+.. .|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus       358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  436 (606)
T 3vq2_A          358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT  436 (606)
T ss_dssp             CSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence            99998755   6788899999999999988554 66778899999999999998887776 6788999999999999999


Q ss_pred             cccCCCcccccccCceecCCCC---c-cccccccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecC
Q 039599          175 TEQRPSSFENVKGLETLGFSEL---D-NLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLN  249 (293)
Q Consensus       175 ~~~~~~~~~~~~~L~~L~l~~~---~-~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~  249 (293)
                      .+..+..+..+++|++|++++|   + ..+..+..+++|++|++++|.+.+. |.           .++++++|++|+++
T Consensus       437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----------~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG-----------VFDTLHRLQLLNMS  505 (606)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-----------TTTTCTTCCEEECC
T ss_pred             CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh-----------hhcccccCCEEECC
Confidence            8888888999999999999999   2 3677888999999999999998887 44           25677888888888


Q ss_pred             CccCCc-CCcccCCCCCCcEEeccCCcCCCCchhHhhcc-cCCCC
Q 039599          250 NCALTS-IPQEIGYLSSLEWLHLRGNNLEGLPASIKQIS-RLESL  292 (293)
Q Consensus       250 ~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~-~L~~l  292 (293)
                      +|.+++ .|..+..+++|+.|++++|+++++|+.+..++ +|+.+
T Consensus       506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l  550 (606)
T 3vq2_A          506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF  550 (606)
T ss_dssp             SSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEE
T ss_pred             CCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEE
Confidence            888887 47778888888888888888888887777765 46654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=2e-28  Score=225.03  Aligned_cols=285  Identities=18%  Similarity=0.128  Sum_probs=177.7

Q ss_pred             eEEEEeecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCCCc-CceEEee
Q 039599            5 IESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLHFV-SPVTIDF   77 (293)
Q Consensus         5 ~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~~~-~L~~L~l   77 (293)
                      ++.+  |+++|....+.+..|.++++|++|++++|.+....  .+.    |++|++++|.+.+..|..++.. +|++|++
T Consensus        35 l~~L--~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           35 TECL--EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             CCEE--ECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcEE--EccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            4444  88888888888888999999999999988876332  222    8889998888777767666544 8888888


Q ss_pred             cCCcCCcccCC---CCCCccEEecccccccccC-ccccCCCCCCEEEeccCccccccccccccccccc--eecccccccC
Q 039599           78 TSCINLTDFPH---ISGNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLI--ALSAYGCLNL  151 (293)
Q Consensus        78 ~~~~~~~~~~~---~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~  151 (293)
                      ++|.+....|.   .+.+|++|++++|.+..++ +.+..+++|++|++++|.+....+..+..+++|+  +|++++|.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            88875442222   3446777788888777653 3344477777777777766554455555555555  4555554433


Q ss_pred             ---------------------------------------------------------------------------CCCCh
Q 039599          152 ---------------------------------------------------------------------------ERFPE  156 (293)
Q Consensus       152 ---------------------------------------------------------------------------~~~~~  156 (293)
                                                                                                 +..+.
T Consensus       193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence                                                                                       22333


Q ss_pred             hhhccccCCceecCCCcccccCCCcccccccCceecCCCC--c-cccccccCccccceecccCCCccC-CCC--cC--CC
Q 039599          157 SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--D-NLSDNIGNFKSFEYMGAHGSAISQ-LPS--LS--SG  228 (293)
Q Consensus       157 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~-~l~~~~~~l~~L~~L~l~~~~~~~-~~~--l~--~~  228 (293)
                      .+..+++|++|++++|.++ .+|..+..+++|++|++++|  . ..+..+..+++|++|++++|.+.. +|.  +.  +.
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            3555666666666666664 45555666666666666666  2 224455666666666666665542 222  11  33


Q ss_pred             CccCccc------------ccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCC-c-hhHhhcccCCCC
Q 039599          229 LVPLSAS------------LLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGL-P-ASIKQISRLESL  292 (293)
Q Consensus       229 l~~l~~~------------~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~-p-~~l~~l~~L~~l  292 (293)
                      ++.|+++            .++.+++|++|++++|.+++ .|..+..+++|+.|++++|++++. | ..+..+++|+.|
T Consensus       352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            4444432            14556666677777666665 445566667777777777766652 2 235556666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=6.9e-29  Score=234.07  Aligned_cols=241  Identities=17%  Similarity=0.206  Sum_probs=144.5

Q ss_pred             eEEEeccCCcccc-----------------cCCCCCC---CcCceEEeecCCcCCcccCCCC---CCccEEeccccc-cc
Q 039599           49 EQLLDSKGCKILR-----------------SFPSNLH---FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDETA-IE  104 (293)
Q Consensus        49 l~~L~l~~~~~~~-----------------~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~-~~  104 (293)
                      |++|++++|.+.+                 .+|..++   +.+|++|++++|.+.+.+|..+   .+|+.|++++|. +.
T Consensus       450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls  529 (876)
T 4ecn_A          450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS  529 (876)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred             CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence            6777777777665                 2666654   4477777777777666666433   356666666665 54


Q ss_pred             --ccCccccCC-------CCCCEEEeccCcccccccc--ccccccccceecccccccCCCCChhhhccccCCceecCCCc
Q 039599          105 --EVPSSIKCL-------TNLKLLRINRCTRLKRVST--SICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT  173 (293)
Q Consensus       105 --~l~~~~~~l-------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~  173 (293)
                        .+|..+..+       ++|++|++++|.+. .+|.  .+..+++|++|++++|.+. .+| .+..+++|++|++++|.
T Consensus       530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC
T ss_pred             cccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc
Confidence              244433333       25666666665554 4554  5555666666666665544 444 45555555555555555


Q ss_pred             ccccCCCccccccc-CceecCCCC--ccccccccC-------------------------------ccccceecccCCCc
Q 039599          174 ITEQRPSSFENVKG-LETLGFSEL--DNLSDNIGN-------------------------------FKSFEYMGAHGSAI  219 (293)
Q Consensus       174 ~~~~~~~~~~~~~~-L~~L~l~~~--~~l~~~~~~-------------------------------l~~L~~L~l~~~~~  219 (293)
                      +. .+|..+..+++ |+.|++++|  ..+|..+..                               +++|+.|++++|.+
T Consensus       607 l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L  685 (876)
T 4ecn_A          607 IE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI  685 (876)
T ss_dssp             CS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC
T ss_pred             cc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC
Confidence            54 45555555555 555555555  333333222                               22455555555555


Q ss_pred             cCCCC-cC---CCCccCcccc----------cC-------CccccceeecCCccCCcCCcccC--CCCCCcEEeccCCcC
Q 039599          220 SQLPS-LS---SGLVPLSASL----------LS-------GLSLLYWLHLNNCALTSIPQEIG--YLSSLEWLHLRGNNL  276 (293)
Q Consensus       220 ~~~~~-l~---~~l~~l~~~~----------~~-------~~~~L~~L~l~~n~i~~l~~~~~--~~~~L~~L~l~~n~l  276 (293)
                      ..+|. +.   +.++.|+++.          +.       ++++|++|++++|.++.+|..+.  .+++|+.|++++|++
T Consensus       686 ~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L  765 (876)
T 4ecn_A          686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF  765 (876)
T ss_dssp             CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCC
T ss_pred             CccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCC
Confidence            55543 21   3455554431          11       22378888888888888887776  788888888888888


Q ss_pred             CCCchhHhhcccCCCCC
Q 039599          277 EGLPASIKQISRLESLD  293 (293)
Q Consensus       277 ~~~p~~l~~l~~L~~ld  293 (293)
                      +++|..+..+++|+.|+
T Consensus       766 ~~lp~~l~~L~~L~~L~  782 (876)
T 4ecn_A          766 SSFPTQPLNSSQLKAFG  782 (876)
T ss_dssp             SSCCCGGGGCTTCCEEE
T ss_pred             CccchhhhcCCCCCEEE
Confidence            88888888888887653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=7.9e-28  Score=221.09  Aligned_cols=124  Identities=19%  Similarity=0.068  Sum_probs=93.2

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCCC-cCceEEe
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLHF-VSPVTID   76 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~~-~~L~~L~   76 (293)
                      .++.+  |+++|....+++..|.++++|++|++++|.+....  .+.    |++|++++|.+.+..|..++. .+|++|+
T Consensus        33 ~l~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           33 STKNI--DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TCCEE--ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CcCEE--ECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            34555  88999888888888999999999999998876432  222    899999999877766777754 4899999


Q ss_pred             ecCCcCCcccCCC---CCCccEEeccccccc--ccCccccCCCCCCEEEeccCccccc
Q 039599           77 FTSCINLTDFPHI---SGNITRLYLDETAIE--EVPSSIKCLTNLKLLRINRCTRLKR  129 (293)
Q Consensus        77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~  129 (293)
                      +++|.+....+..   +.+|++|++++|.+.  .+|..++++++|++|++++|.+...
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            9988844333232   457888888888886  4677888888888888888765543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.6e-28  Score=231.54  Aligned_cols=274  Identities=14%  Similarity=0.171  Sum_probs=193.5

Q ss_pred             ccceeechhhccCCccccEEEEeccceee------------------ec-cc------ceEEEeccCCcccccCCCCCCC
Q 039599           15 IKGINLNLRAFSNMSNLRVLKFYIPEISV------------------HM-SI------EEQLLDSKGCKILRSFPSNLHF   69 (293)
Q Consensus        15 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------------~~-~~------~l~~L~l~~~~~~~~~~~~~~~   69 (293)
                      |....++ ..|.++++|++|++++|.+..                  .+ .+      .|++|++++|.+.+.+|..+..
T Consensus       435 N~L~~IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITFIS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEEEC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccchh-HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            3444444 367777888888888777665                  11 11      1777888877777777766653


Q ss_pred             -cCceEEeecCCc-CCc-ccCC----------CCCCccEEecccccccccCc--cccCCCCCCEEEeccCcccccccccc
Q 039599           70 -VSPVTIDFTSCI-NLT-DFPH----------ISGNITRLYLDETAIEEVPS--SIKCLTNLKLLRINRCTRLKRVSTSI  134 (293)
Q Consensus        70 -~~L~~L~l~~~~-~~~-~~~~----------~~~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l  134 (293)
                       ++|+.|++++|. +.+ .+|.          .+++|++|++++|.+..+|.  .+..+++|++|++++|.+. .+| .+
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~  591 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AF  591 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence             377777777776 443 3443          22367777777777777776  6777777777777777655 555 56


Q ss_pred             ccccccceecccccccCCCCChhhhcccc-CCceecCCCcccccCCCcccc-----------------------------
Q 039599          135 CKLKSLIALSAYGCLNLERFPESLEKMEH-LNQINLGRTTITEQRPSSFEN-----------------------------  184 (293)
Q Consensus       135 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~-----------------------------  184 (293)
                      ..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..                             
T Consensus       592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence            67777777777777655 66666666666 777777776664 44443322                             


Q ss_pred             --cccCceecCCCC--cccccccc-CccccceecccCCCccCCCC-cCC----------CCccCcccc---------cC-
Q 039599          185 --VKGLETLGFSEL--DNLSDNIG-NFKSFEYMGAHGSAISQLPS-LSS----------GLVPLSASL---------LS-  238 (293)
Q Consensus       185 --~~~L~~L~l~~~--~~l~~~~~-~l~~L~~L~l~~~~~~~~~~-l~~----------~l~~l~~~~---------~~-  238 (293)
                        .++|+.|++++|  ..+|..+. .+++|+.|++++|.+..+|. +..          .|+.|+++.         +. 
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~  749 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA  749 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence              235666666666  44555443 78999999999999998866 332          677777642         43 


Q ss_pred             -CccccceeecCCccCCcCCcccCCCCCCcEEeccC------CcCCC-CchhHhhcccCCCCC
Q 039599          239 -GLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRG------NNLEG-LPASIKQISRLESLD  293 (293)
Q Consensus       239 -~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~------n~l~~-~p~~l~~l~~L~~ld  293 (293)
                       .+++|+.|++++|.++++|..+..+++|+.|++++      |++.+ +|..+..+++|+.||
T Consensus       750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~  812 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ  812 (876)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence             78999999999999999999999999999999977      66775 899999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=1.5e-28  Score=223.25  Aligned_cols=134  Identities=16%  Similarity=0.251  Sum_probs=83.6

Q ss_pred             hccccCCceecCCCcccccCC---CcccccccCceecCCCC--cccc---ccccCccccceecccCCCccCCCC------
Q 039599          159 EKMEHLNQINLGRTTITEQRP---SSFENVKGLETLGFSEL--DNLS---DNIGNFKSFEYMGAHGSAISQLPS------  224 (293)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~~--~~l~---~~~~~l~~L~~L~l~~~~~~~~~~------  224 (293)
                      ..+++|++|++++|.+++..+   ..+..+++|+.|++++|  ..++   ..+..+++|++|++++|.+..+|.      
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  410 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE  410 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence            356677777777777655432   12344555555555555  2221   234445555555555555544433      


Q ss_pred             ------------------cCCCCccCcccc------cCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCc
Q 039599          225 ------------------LSSGLVPLSASL------LSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLP  280 (293)
Q Consensus       225 ------------------l~~~l~~l~~~~------~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p  280 (293)
                                        +...++.|+++.      ...+++|++|++++|.++.+|. ...+++|+.|++++|+++++|
T Consensus       411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~  489 (549)
T 2z81_A          411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVP  489 (549)
T ss_dssp             TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCC
T ss_pred             cccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcC
Confidence                              223444444431      2367889999999999888886 457899999999999999854


Q ss_pred             -hhHhhcccCCCCC
Q 039599          281 -ASIKQISRLESLD  293 (293)
Q Consensus       281 -~~l~~l~~L~~ld  293 (293)
                       ..+..+++|+.+|
T Consensus       490 ~~~~~~l~~L~~L~  503 (549)
T 2z81_A          490 DGIFDRLTSLQKIW  503 (549)
T ss_dssp             TTGGGGCTTCCEEE
T ss_pred             HHHHhcCcccCEEE
Confidence             5588888887654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.1e-28  Score=208.92  Aligned_cols=219  Identities=17%  Similarity=0.224  Sum_probs=182.9

Q ss_pred             eEEEeccC-CcccccCCCCCC-CcCceEEeecCCcCCcccCCC---CCCccEEeccccccc-ccCccccCCCCCCEEEec
Q 039599           49 EQLLDSKG-CKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIE-EVPSSIKCLTNLKLLRIN  122 (293)
Q Consensus        49 l~~L~l~~-~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~  122 (293)
                      |++|++++ |.+.+.+|..+. +++|++|++++|.+.+.+|..   +.+|++|++++|.+. .+|..+..+++|++|+++
T Consensus        78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  157 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence            44444442 444556676665 449999999999876677754   458999999999997 788889999999999999


Q ss_pred             cCcccccccccccccc-ccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccc
Q 039599          123 RCTRLKRVSTSICKLK-SLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNL  199 (293)
Q Consensus       123 ~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l  199 (293)
                      +|.+.+..|..+..++ .|++|++++|.+.+.+|..+..++ |++|++++|.+++..+..+..+++|+.|++++|  ...
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence            9998888898898988 999999999998888999999887 999999999998888888999999999999999  334


Q ss_pred             cccccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCc-C
Q 039599          200 SDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNN-L  276 (293)
Q Consensus       200 ~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~-l  276 (293)
                      +..+..+++|++|++++|.+.+. |.           .+..+++|++|++++|.+++ +|.. ..+++|+.+++++|+ +
T Consensus       237 ~~~~~~l~~L~~L~Ls~N~l~~~~p~-----------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          237 LGKVGLSKNLNGLDLRNNRIYGTLPQ-----------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             GGGCCCCTTCCEEECCSSCCEECCCG-----------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred             cCcccccCCCCEEECcCCcccCcCCh-----------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence            44578899999999999999855 65           36688899999999999986 7765 889999999999997 5


Q ss_pred             CCCc
Q 039599          277 EGLP  280 (293)
Q Consensus       277 ~~~p  280 (293)
                      .+.|
T Consensus       305 c~~p  308 (313)
T 1ogq_A          305 CGSP  308 (313)
T ss_dssp             ESTT
T ss_pred             cCCC
Confidence            5544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=4.6e-28  Score=215.24  Aligned_cols=259  Identities=16%  Similarity=0.152  Sum_probs=197.2

Q ss_pred             ecCcccce-eechhhccCCccccEEEEeccceeee-c-ccc----eEEEeccCCcccccCCCC--CC-CcCceEEeecCC
Q 039599           11 NLSTIKGI-NLNLRAFSNMSNLRVLKFYIPEISVH-M-SIE----EQLLDSKGCKILRSFPSN--LH-FVSPVTIDFTSC   80 (293)
Q Consensus        11 ~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~----l~~L~l~~~~~~~~~~~~--~~-~~~L~~L~l~~~   80 (293)
                      ++++|... .+++..|..+++|++|++++|.+... + .+.    |++|++++|.+.+..+..  +. +.+|++|++++|
T Consensus        60 ~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  139 (455)
T 3v47_A           60 KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN  139 (455)
T ss_dssp             ECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred             ECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC
Confidence            77777654 55566788888888888888876533 1 222    788888888765533322  43 347888888888


Q ss_pred             cCCcccCCC----CCCccEEecccccccccCc-ccc----------------------------------CCCCCCEEEe
Q 039599           81 INLTDFPHI----SGNITRLYLDETAIEEVPS-SIK----------------------------------CLTNLKLLRI  121 (293)
Q Consensus        81 ~~~~~~~~~----~~~L~~L~l~~~~~~~l~~-~~~----------------------------------~l~~L~~L~l  121 (293)
                      .+....|..    +.+|++|++++|.+..+++ .+.                                  .+++|++|++
T Consensus       140 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L  219 (455)
T 3v47_A          140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL  219 (455)
T ss_dssp             BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEEC
T ss_pred             ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEec
Confidence            755444542    3577777887777754432 222                                  3467899999


Q ss_pred             ccCcccccccccccc---------------------------------------ccccceecccccccCCCCChhhhccc
Q 039599          122 NRCTRLKRVSTSICK---------------------------------------LKSLIALSAYGCLNLERFPESLEKME  162 (293)
Q Consensus       122 ~~~~~~~~~~~~l~~---------------------------------------l~~L~~L~l~~~~~~~~~~~~~~~l~  162 (293)
                      ++|.+.+..+..+..                                       .++|++|++++|.+.+..+..+..++
T Consensus       220 s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  299 (455)
T 3v47_A          220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT  299 (455)
T ss_dssp             TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence            998766544433221                                       25789999999988888888999999


Q ss_pred             cCCceecCCCcccccCCCcccccccCceecCCCC--c-cccccccCccccceecccCCCccCC-CCcCCCCccCcccccC
Q 039599          163 HLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--D-NLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLS  238 (293)
Q Consensus       163 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~-~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~  238 (293)
                      +|++|++++|.+.+..+..|..+++|+.|++++|  . ..+..+..+++|++|++++|.+.++ |.           .+.
T Consensus       300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------~~~  368 (455)
T 3v47_A          300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ-----------SFL  368 (455)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT-----------TTT
T ss_pred             CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh-----------hcc
Confidence            9999999999998888888999999999999999  3 3467788999999999999999887 54           367


Q ss_pred             CccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC-Cc
Q 039599          239 GLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG-LP  280 (293)
Q Consensus       239 ~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~-~p  280 (293)
                      ++++|++|++++|.++++|. .+..+++|+.|++++|++++ .|
T Consensus       369 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            88999999999999999765 46889999999999999997 44

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=3.7e-27  Score=202.23  Aligned_cols=260  Identities=18%  Similarity=0.259  Sum_probs=209.1

Q ss_pred             hccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccC--CCCCCccEEe
Q 039599           24 AFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFP--HISGNITRLY   97 (293)
Q Consensus        24 ~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~   97 (293)
                      .+..+++|++|+++++.+...+.+.    +++|++++|.+.. ++....+++|++|++++|. .+.++  ..+.+|++|+
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~  116 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELY  116 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEE
T ss_pred             cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCcccc-chhhhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEE
Confidence            4567889999999999887554443    9999999997654 3444445699999999998 44454  3456899999


Q ss_pred             cccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCccccc
Q 039599           98 LDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQ  177 (293)
Q Consensus        98 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  177 (293)
                      +++|.+..++. +..+++|++|++++|......+. +..+++|++|++++|...+..+  +..+++|++|++++|.+.+.
T Consensus       117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred             CcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence            99999998877 88999999999999976665444 7899999999999997654333  88999999999999999654


Q ss_pred             CCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcC--CCCccCccc--------ccCCccccce
Q 039599          178 RPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLS--SGLVPLSAS--------LLSGLSLLYW  245 (293)
Q Consensus       178 ~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~~--------~~~~~~~L~~  245 (293)
                       +. +..+++|+.++++++  ...+. +..+++|++|++++|.+.+.+.+.  +.++.|+++        .+..+++|++
T Consensus       193 -~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~  269 (347)
T 4fmz_A          193 -SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKM  269 (347)
T ss_dssp             -GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             -cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCE
Confidence             32 788999999999998  33333 788999999999999998885422  566666654        3678889999


Q ss_pred             eecCCccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHhhcccCCCCC
Q 039599          246 LHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESLD  293 (293)
Q Consensus       246 L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~L~~ld  293 (293)
                      |++++|.+++++ .+..+++|+.|++++|++++ .|..+..+++|+.|+
T Consensus       270 L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  317 (347)
T 4fmz_A          270 LNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF  317 (347)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred             EEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence            999999998874 47889999999999999987 667788888888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=9.2e-28  Score=209.27  Aligned_cols=252  Identities=15%  Similarity=0.117  Sum_probs=131.4

Q ss_pred             ecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCC
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINL   83 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~   83 (293)
                      +++++....++...|..+++|++|++++|.+...+  .+.    |++|++++|.+.+..|..+. +++|++|++++|. .
T Consensus        51 ~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l  129 (390)
T 3o6n_A           51 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-L  129 (390)
T ss_dssp             EEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred             EecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-c
Confidence            66666666666666777777777777777665332  122    77777777776555555444 3477777777776 3


Q ss_pred             cccCCC----CCCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCC-CChh
Q 039599           84 TDFPHI----SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLER-FPES  157 (293)
Q Consensus        84 ~~~~~~----~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~  157 (293)
                      +.+|..    +.+|++|++++|.+..+++ .+..+++|++|++++|.+....   +..+++|+.|++++|.+.+. .+..
T Consensus       130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~  206 (390)
T 3o6n_A          130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIA  206 (390)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSS
T ss_pred             CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCc
Confidence            345432    3467777777777766544 4667777777777776654421   23334444444443322210 0000


Q ss_pred             h---------------hccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCc
Q 039599          158 L---------------EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAI  219 (293)
Q Consensus       158 ~---------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~  219 (293)
                      +               ...++|++|++++|.+++.  ..+..+++|+.|++++|   +..+..+..+++|++|++++|.+
T Consensus       207 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  284 (390)
T ss_dssp             CSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred             ceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence            0               0112344444444444321  23444455555555554   22234444555555555555554


Q ss_pred             cCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCC
Q 039599          220 SQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGL  279 (293)
Q Consensus       220 ~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~  279 (293)
                      .++|.           .+..+++|++|++++|.++.+|..+..+++|+.|++++|+++++
T Consensus       285 ~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          285 VALNL-----------YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL  333 (390)
T ss_dssp             CEEEC-----------SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             cccCc-----------ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee
Confidence            44422           12234445555555555554444444455555555555555444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=3e-27  Score=211.27  Aligned_cols=262  Identities=17%  Similarity=0.161  Sum_probs=220.7

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeecc--c----ceEEEeccCCcccccCCCCCCC-cCceEEe
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMS--I----EEQLLDSKGCKILRSFPSNLHF-VSPVTID   76 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~----~l~~L~l~~~~~~~~~~~~~~~-~~L~~L~   76 (293)
                      .++.+  ++++|....+.+..|.++++|++|++++|.+...+.  +    .|++|++++|.+....+..+.. ++|+.|+
T Consensus        57 ~L~~L--~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           57 HLEEL--ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             TCCEE--ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEE--ECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            34555  999999999988899999999999999998874331  2    2999999999988777777654 4999999


Q ss_pred             ecCCcCCcccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCC
Q 039599           77 FTSCINLTDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE  152 (293)
Q Consensus        77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  152 (293)
                      +++|.+....+..   +.+|++|++++|.+..++. .+..+++|+.|++++|.+....+..+..+++|++|++++|...+
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~  214 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD  214 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred             CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence            9999855544433   4589999999999998886 58899999999999998877667788899999999999998888


Q ss_pred             CCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cc-ccccccCccccceecccCCCccCC-CCcCCC
Q 039599          153 RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DN-LSDNIGNFKSFEYMGAHGSAISQL-PSLSSG  228 (293)
Q Consensus       153 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~-l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~  228 (293)
                      .+++......+|++|++++|.+++..+..+..+++|+.|++++|  .. .+..+..+++|+.|++++|.+.++ |.    
T Consensus       215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----  290 (477)
T 2id5_A          215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY----  290 (477)
T ss_dssp             EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT----
T ss_pred             ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH----
Confidence            88877777779999999999997544456889999999999999  33 344678899999999999999887 44    


Q ss_pred             CccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC
Q 039599          229 LVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       229 l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~  278 (293)
                             .+.++++|++|++++|.++.++. .+..+++|+.|++++|++..
T Consensus       291 -------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          291 -------AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             -------TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             -------HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence                   36788999999999999999665 57889999999999999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=3.7e-27  Score=224.16  Aligned_cols=275  Identities=19%  Similarity=0.189  Sum_probs=172.9

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEecccee--e-ecccc----eEEEeccCCcccccCCCCCCCc-CceEE
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEIS--V-HMSIE----EQLLDSKGCKILRSFPSNLHFV-SPVTI   75 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~-~~~~~----l~~L~l~~~~~~~~~~~~~~~~-~L~~L   75 (293)
                      .++.+  |+++|....+.+..|.++++|++|++++|...  . +..+.    |++|++++|.+.+..|..+... +|++|
T Consensus        25 ~l~~L--dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           25 TTERL--LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TCCEE--EEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CcCEE--ECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            45555  88888888888888899999999999888443  1 11222    8999999988877777777644 89999


Q ss_pred             eecCCcCCcccCC-----CCCCccEEecccccccccC--ccccCCCCCCEEEeccCccccccccccccc--cccceeccc
Q 039599           76 DFTSCINLTDFPH-----ISGNITRLYLDETAIEEVP--SSIKCLTNLKLLRINRCTRLKRVSTSICKL--KSLIALSAY  146 (293)
Q Consensus        76 ~l~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~  146 (293)
                      ++++|.+...+|.     .+.+|++|++++|.+..++  +.++++++|++|++++|.+....+..+..+  ++|+.|+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            9999886655543     2457888899998887553  468888999999999888776666666655  677777777


Q ss_pred             ccccCCCCChhhhcccc------CCceecCCCcccccCCCcccc------------------------------------
Q 039599          147 GCLNLERFPESLEKMEH------LNQINLGRTTITEQRPSSFEN------------------------------------  184 (293)
Q Consensus       147 ~~~~~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~~~~------------------------------------  184 (293)
                      .|.+.+..+..+..+++      |++|++++|.+++..+..+..                                    
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            77666655554444443      677777776554433332221                                    


Q ss_pred             --cccCceecCCCC---ccccccccCccccceecccCCCccCC-CC-cC--CCCccCccc----------ccCCccccce
Q 039599          185 --VKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL-PS-LS--SGLVPLSAS----------LLSGLSLLYW  245 (293)
Q Consensus       185 --~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~--~~l~~l~~~----------~~~~~~~L~~  245 (293)
                        .++|+.|++++|   ...+..+..+++|+.|++++|.+.+. |. +.  +.++.|+++          .+.++++|++
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence              135566666555   22344455566666666666666555 22 11  222222211          2445555555


Q ss_pred             eecCCccCCcCC-cccCCCCCCcEEeccCCcCCCCc
Q 039599          246 LHLNNCALTSIP-QEIGYLSSLEWLHLRGNNLEGLP  280 (293)
Q Consensus       246 L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~~p  280 (293)
                      |++++|.++.++ ..+..+++|+.|++++|.+++++
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence            555555555533 23455555555555555555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.1e-27  Score=214.45  Aligned_cols=144  Identities=18%  Similarity=0.192  Sum_probs=115.7

Q ss_pred             ccccccceecccccccCCCCChhhhccccCCceecCCCcccc--cCCCcccccccCceecCCCC--cc-cccc-ccCccc
Q 039599          135 CKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITE--QRPSSFENVKGLETLGFSEL--DN-LSDN-IGNFKS  208 (293)
Q Consensus       135 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~--~~-l~~~-~~~l~~  208 (293)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.+++  .+|..+..+++|+.|++++|  .. ++.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            456788888888888887788888899999999999998865  44566788899999999988  33 5553 667888


Q ss_pred             cceecccCCCccCC-CC-cCCCCccCcccc---------cCCccccceeecCCccCCcCCcc-cCCCCCCcEEeccCCcC
Q 039599          209 FEYMGAHGSAISQL-PS-LSSGLVPLSASL---------LSGLSLLYWLHLNNCALTSIPQE-IGYLSSLEWLHLRGNNL  276 (293)
Q Consensus       209 L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~---------~~~~~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~l  276 (293)
                      |++|++++|.+.+. |. +.+.++.|+++.         +..+++|++|++++|.++.+|.. +..+++|+.|++++|++
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence            88999988888654 43 335666666542         44788999999999999998876 88999999999999999


Q ss_pred             CC
Q 039599          277 EG  278 (293)
Q Consensus       277 ~~  278 (293)
                      +.
T Consensus       481 ~c  482 (520)
T 2z7x_B          481 DC  482 (520)
T ss_dssp             CC
T ss_pred             cc
Confidence            86

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.2e-27  Score=203.62  Aligned_cols=215  Identities=17%  Similarity=0.254  Sum_probs=141.0

Q ss_pred             eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCCC---CCccEEecccccccccCccccCCCCCCEEEeccC
Q 039599           49 EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRC  124 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~  124 (293)
                      ++.|++++|.+. .+|..+. +.+|++|++++|.+. .+|..+   .+|++|++++|.+..+|..+..+++|++|++++|
T Consensus        83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred             eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence            677777777654 5555443 347777777777644 666543   4677777777777777777777777777777776


Q ss_pred             cccccccccccc---------ccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCC
Q 039599          125 TRLKRVSTSICK---------LKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSE  195 (293)
Q Consensus       125 ~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  195 (293)
                      ...+.+|..+..         +++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++
T Consensus       161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTT
T ss_pred             CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcC
Confidence            666666655443         677777777777554 66666777777777777777775 3555566677777777776


Q ss_pred             C---ccccccccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEe
Q 039599          196 L---DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLH  270 (293)
Q Consensus       196 ~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~  270 (293)
                      |   +.+|..+..+++|++|++++|.+.+. |.           .+..+++|++|++++|.+.+ +|.++..+++|+.++
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-----------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-----------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-----------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCchhhcch-----------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            5   45566666677777777777655443 43           24466667777777765544 777777777777777


Q ss_pred             ccCCcCCC
Q 039599          271 LRGNNLEG  278 (293)
Q Consensus       271 l~~n~l~~  278 (293)
                      +..+.+..
T Consensus       308 l~~~~~~~  315 (328)
T 4fcg_A          308 VPPHLQAQ  315 (328)
T ss_dssp             CCGGGSCC
T ss_pred             CCHHHHHH
Confidence            76665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=1e-26  Score=207.19  Aligned_cols=190  Identities=19%  Similarity=0.349  Sum_probs=92.8

Q ss_pred             ccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCC
Q 039599           93 ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT  172 (293)
Q Consensus        93 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n  172 (293)
                      |++|++++|.+..++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ + +.+..+++|++|++++|
T Consensus       179 L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n  253 (466)
T 1o6v_A          179 LERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANN  253 (466)
T ss_dssp             CCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred             CCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCC
Confidence            344444444433332 23344444444444444333222  3334444444444443322 1 23444555555555555


Q ss_pred             cccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcC--CCCccCcccc--------cCCc
Q 039599          173 TITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLS--SGLVPLSASL--------LSGL  240 (293)
Q Consensus       173 ~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~~~--------~~~~  240 (293)
                      .+.+..+  +..+++|+.|++++|  ..++. +..+++|+.|++++|.+.+++.+.  +.++.|+++.        +..+
T Consensus       254 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l  330 (466)
T 1o6v_A          254 QISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL  330 (466)
T ss_dssp             CCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGC
T ss_pred             ccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccC
Confidence            5533222  445555555555555  22222 445555566666555555553211  3344444321        3455


Q ss_pred             cccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCC
Q 039599          241 SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL  292 (293)
Q Consensus       241 ~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~l  292 (293)
                      ++|++|++++|.+++++ .+..+++|+.|++++|++++.++ +..+++|+.|
T Consensus       331 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  380 (466)
T 1o6v_A          331 TKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQL  380 (466)
T ss_dssp             TTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEE
T ss_pred             ccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEE
Confidence            66666666666666653 45666777777777777766544 5556666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=4.3e-27  Score=215.75  Aligned_cols=252  Identities=15%  Similarity=0.117  Sum_probs=138.1

Q ss_pred             ecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCC
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINL   83 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~   83 (293)
                      +++++....+++..|..+++|++|++++|.+...+  .+.    |++|++++|.+.+..|..++ +++|++|++++|. +
T Consensus        57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l  135 (597)
T 3oja_B           57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-L  135 (597)
T ss_dssp             EESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred             EeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-C
Confidence            66666666677667777778888888877766432  222    77888887776665555544 4478888888777 3


Q ss_pred             cccCCC----CCCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCC-CChh
Q 039599           84 TDFPHI----SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLER-FPES  157 (293)
Q Consensus        84 ~~~~~~----~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~  157 (293)
                      +.+|..    +.+|++|++++|.+..+++ .+..+++|++|++++|.+....   +..+++|+.|++++|.+.+. .+..
T Consensus       136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~  212 (597)
T 3oja_B          136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIA  212 (597)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTT
T ss_pred             CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCch
Confidence            445432    3467777888877766654 5677778888888777655421   23344444444444432210 0000


Q ss_pred             h---------------hccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCc
Q 039599          158 L---------------EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAI  219 (293)
Q Consensus       158 ~---------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~  219 (293)
                      +               ...++|+.|++++|.+++  +..+..+++|+.|++++|   +..+..+..+++|+.|++++|.+
T Consensus       213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             hheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence            0               001234444444444432  233445555555555555   22344455555555555555555


Q ss_pred             cCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCC
Q 039599          220 SQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGL  279 (293)
Q Consensus       220 ~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~  279 (293)
                      .++|.           .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++++
T Consensus       291 ~~l~~-----------~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          291 VALNL-----------YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL  339 (597)
T ss_dssp             CEEEC-----------SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             CCCCc-----------ccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc
Confidence            54432           12234455555555555555554444455555555555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=6.6e-27  Score=213.15  Aligned_cols=275  Identities=16%  Similarity=0.149  Sum_probs=176.2

Q ss_pred             eecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCCC-cCceEEeecCCcC
Q 039599           10 LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCIN   82 (293)
Q Consensus        10 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~   82 (293)
                      +|++++....++....   +++++|++++|.+...+  .+.    |++|++++|.+.+..|..+.. .+|++|++++|. 
T Consensus        36 l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-  111 (562)
T 3a79_B           36 VDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-  111 (562)
T ss_dssp             EECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred             EEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-
Confidence            4777776666664222   67778888877776332  222    778888877766665666553 478888888777 


Q ss_pred             CcccCC-CCCCccEEecccccccccC--ccccCCCCCCEEEeccCcccccccccccccccc--ceeccccccc--CCCCC
Q 039599           83 LTDFPH-ISGNITRLYLDETAIEEVP--SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSL--IALSAYGCLN--LERFP  155 (293)
Q Consensus        83 ~~~~~~-~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~  155 (293)
                      ++.+|. .+.+|++|++++|.+..++  ..++++++|++|++++|.+...   .+..+++|  ++|++++|.+  .+..|
T Consensus       112 l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~  188 (562)
T 3a79_B          112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGET  188 (562)
T ss_dssp             CCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred             CCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCc
Confidence            345554 3457777788888777654  5677777888888877765442   22333333  6666666544  32222


Q ss_pred             hhhhcc--------------------------------------------------------------------------
Q 039599          156 ESLEKM--------------------------------------------------------------------------  161 (293)
Q Consensus       156 ~~~~~l--------------------------------------------------------------------------  161 (293)
                      ..+..+                                                                          
T Consensus       189 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~  268 (562)
T 3a79_B          189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK  268 (562)
T ss_dssp             CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH
T ss_pred             ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHH
Confidence            222221                                                                          


Q ss_pred             -------ccCCceecCCCcccccCCCcc----------------------------------------------------
Q 039599          162 -------EHLNQINLGRTTITEQRPSSF----------------------------------------------------  182 (293)
Q Consensus       162 -------~~L~~L~l~~n~~~~~~~~~~----------------------------------------------------  182 (293)
                             ++|++|++++|.+++.+|..+                                                    
T Consensus       269 ~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~  348 (562)
T 3a79_B          269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC  348 (562)
T ss_dssp             HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred             HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC
Confidence                   145555555555554444432                                                    


Q ss_pred             -cccccCceecCCCC---ccccccccCccccceecccCCCccCCCC----cC--CCCccCccc-----------ccCCcc
Q 039599          183 -ENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQLPS----LS--SGLVPLSAS-----------LLSGLS  241 (293)
Q Consensus       183 -~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~~~----l~--~~l~~l~~~-----------~~~~~~  241 (293)
                       ..+++|+.|++++|   +..+..+..+++|++|++++|.+.+++.    +.  +.++.|+++           .+..++
T Consensus       349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence             45678888888888   4466777888889999998888887642    11  445555443           144566


Q ss_pred             ccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599          242 LLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       242 ~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      +|++|++++|.+++ +|..+.  ++|+.|++++|+++.+|+.+..+++|+.||
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~  479 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELN  479 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEE
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEE
Confidence            77777777777765 443332  689999999999999988888888887664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=5e-26  Score=193.92  Aligned_cols=264  Identities=14%  Similarity=0.171  Sum_probs=204.2

Q ss_pred             ecCcccceeechhhccCCccccEEEEeccceeeecc--cc----eEEEeccCCcccccCCCCCCC-cCceEEeecCCcCC
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMS--IE----EQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCINL   83 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~----l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~   83 (293)
                      +++++....++. .+  .+++++|++++|.+...+.  +.    |++|++++|.+.+..|..+.. ++|++|++++|. +
T Consensus        37 ~~~~~~l~~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l  112 (330)
T 1xku_A           37 QCSDLGLEKVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-L  112 (330)
T ss_dssp             ECTTSCCCSCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-C
T ss_pred             EecCCCccccCc-cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-C
Confidence            666665555553 22  2578999999988874332  22    899999999877766777754 499999999998 5


Q ss_pred             cccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCcccc--ccccccccccccceecccccccCCCCChhhh
Q 039599           84 TDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLK--RVSTSICKLKSLIALSAYGCLNLERFPESLE  159 (293)
Q Consensus        84 ~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  159 (293)
                      +.+|..+ .+|++|++++|.+..+++ .+.++++|++|++++|.+..  ..+..+..+++|++|++++|.+. .+|..+.
T Consensus       113 ~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~  191 (330)
T 1xku_A          113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP  191 (330)
T ss_dssp             SBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC
T ss_pred             CccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc
Confidence            5666544 589999999999988876 57889999999999987753  45667888999999999998665 3554432


Q ss_pred             ccccCCceecCCCcccccCCCcccccccCceecCCCC--ccc-cccccCccccceecccCCCccCCCCcCCCCccCcccc
Q 039599          160 KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL  236 (293)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~  236 (293)
                        ++|++|++++|.+++..+..+..+++|+.|++++|  ..+ +..+..+++|++|++++|.+..+|.           .
T Consensus       192 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-----------~  258 (330)
T 1xku_A          192 --PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-----------G  258 (330)
T ss_dssp             --TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-----------T
T ss_pred             --ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-----------h
Confidence              78999999999998777788889999999999998  333 4467888999999999999988866           2


Q ss_pred             cCCccccceeecCCccCCcCCc-ccC------CCCCCcEEeccCCcCCC---CchhHhhcccCCCC
Q 039599          237 LSGLSLLYWLHLNNCALTSIPQ-EIG------YLSSLEWLHLRGNNLEG---LPASIKQISRLESL  292 (293)
Q Consensus       237 ~~~~~~L~~L~l~~n~i~~l~~-~~~------~~~~L~~L~l~~n~l~~---~p~~l~~l~~L~~l  292 (293)
                      +..+++|++|++++|.|++++. .+.      ..+.++.+++++|++..   .|..+..+.+++.+
T Consensus       259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l  324 (330)
T 1xku_A          259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  324 (330)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEE
Confidence            5678899999999999998654 343      24788999999999873   45667777777655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=3.3e-26  Score=195.19  Aligned_cols=264  Identities=15%  Similarity=0.169  Sum_probs=202.9

Q ss_pred             ecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCC
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINL   83 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~   83 (293)
                      +++++....++.. +  .+++++|++++|.+....  .+.    |++|++++|.+.+..|..+. +++|++|++++|. .
T Consensus        39 ~~~~~~l~~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l  114 (332)
T 2ft3_A           39 QCSDLGLKAVPKE-I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-L  114 (332)
T ss_dssp             ECCSSCCSSCCSC-C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-C
T ss_pred             ECCCCCccccCCC-C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-C
Confidence            6777666555542 2  267889999988876432  222    89999999887766666665 4599999999988 4


Q ss_pred             cccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCcccc--ccccccccccccceecccccccCCCCChhhh
Q 039599           84 TDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLK--RVSTSICKLKSLIALSAYGCLNLERFPESLE  159 (293)
Q Consensus        84 ~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  159 (293)
                      +.+|... .+|++|++++|.+..++. .+..+++|++|++++|.+..  ..+..+..+ +|++|++++|.+.+ +|..+.
T Consensus       115 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~  192 (332)
T 2ft3_A          115 VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP  192 (332)
T ss_dssp             CSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC
T ss_pred             CccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc
Confidence            5666544 589999999999988876 57889999999999987753  445566666 89999999987654 554433


Q ss_pred             ccccCCceecCCCcccccCCCcccccccCceecCCCC--ccc-cccccCccccceecccCCCccCCCCcCCCCccCcccc
Q 039599          160 KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL  236 (293)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~  236 (293)
                        ++|++|++++|.+++..+..+..+++|+.|++++|  ..+ +..+..+++|++|++++|.+..+|.           .
T Consensus       193 --~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-----------~  259 (332)
T 2ft3_A          193 --ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-----------G  259 (332)
T ss_dssp             --SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-----------T
T ss_pred             --CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-----------h
Confidence              68999999999998777778889999999999998  333 4467889999999999999988866           2


Q ss_pred             cCCccccceeecCCccCCcCCc-ccCC------CCCCcEEeccCCcCC--C-CchhHhhcccCCCCC
Q 039599          237 LSGLSLLYWLHLNNCALTSIPQ-EIGY------LSSLEWLHLRGNNLE--G-LPASIKQISRLESLD  293 (293)
Q Consensus       237 ~~~~~~L~~L~l~~n~i~~l~~-~~~~------~~~L~~L~l~~n~l~--~-~p~~l~~l~~L~~ld  293 (293)
                      +..+++|++|++++|.+++++. .+..      .+.|+.+++++|++.  + .|..+..+++|+.++
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~  326 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ  326 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred             hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence            5678899999999999998653 3433      467899999999987  3 566788888888763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=3.3e-27  Score=215.37  Aligned_cols=284  Identities=17%  Similarity=0.171  Sum_probs=174.1

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeec--cc----ceEEEeccCCcccccCCCCCCC-cCceEEe
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SI----EEQLLDSKGCKILRSFPSNLHF-VSPVTID   76 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~----~l~~L~l~~~~~~~~~~~~~~~-~~L~~L~   76 (293)
                      .++.+  |+++|....+.+..|..+++|++|++++|.+....  .+    .|++|++++|.+....+..+.. .+|++|+
T Consensus        29 ~l~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           29 STKNL--DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SCCEE--ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccEE--EccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            34444  88888888888778888888888888888776332  12    2888888888866665566654 4888888


Q ss_pred             ecCCcCCcccCC----CCCCccEEecccccccc--cCccccCCCCCCEEEeccCcccccccccccccccc----ceeccc
Q 039599           77 FTSCINLTDFPH----ISGNITRLYLDETAIEE--VPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSL----IALSAY  146 (293)
Q Consensus        77 l~~~~~~~~~~~----~~~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~  146 (293)
                      +++|. .+.++.    .+.+|++|++++|.+..  +|..++++++|++|++++|.+....+..+..+++|    +.++++
T Consensus       107 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             CTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            88887 443332    34578888888888864  67788888888888888887766555666666666    667777


Q ss_pred             ccccCCCCChhhhccccCCceecCCC------------------------------------------------------
Q 039599          147 GCLNLERFPESLEKMEHLNQINLGRT------------------------------------------------------  172 (293)
Q Consensus       147 ~~~~~~~~~~~~~~l~~L~~L~l~~n------------------------------------------------------  172 (293)
                      +|.+.+..+..+... +|++|++++|                                                      
T Consensus       186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            765544333333322 3444444433                                                      


Q ss_pred             ----cccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCC-cCC------------------
Q 039599          173 ----TITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPS-LSS------------------  227 (293)
Q Consensus       173 ----~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~------------------  227 (293)
                          .+.+..+..+..+++|+.|+++++  ..++..+..+ +|+++++++|.+..+|. ..+                  
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~  343 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE  343 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc
Confidence                122233344455566666666665  4455555555 56666666665554433 112                  


Q ss_pred             ----CCccCccc------------ccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCc--hhHhhcccC
Q 039599          228 ----GLVPLSAS------------LLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLP--ASIKQISRL  289 (293)
Q Consensus       228 ----~l~~l~~~------------~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p--~~l~~l~~L  289 (293)
                          .++.|+++            .+.++++|++|++++|.+++++..+..+++|+.|++++|.+++.+  ..+..+++|
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence                33333322            123445566666666655554444566666666666666666532  245556666


Q ss_pred             CCC
Q 039599          290 ESL  292 (293)
Q Consensus       290 ~~l  292 (293)
                      +.|
T Consensus       424 ~~L  426 (570)
T 2z63_A          424 IYL  426 (570)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=3.6e-26  Score=212.75  Aligned_cols=176  Identities=23%  Similarity=0.261  Sum_probs=86.1

Q ss_pred             CCEEEeccCccccccccccccccccceecccccccCCCCC-hhhhccccCCceecCCCcccccCCCcccccccCceecCC
Q 039599          116 LKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS  194 (293)
Q Consensus       116 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  194 (293)
                      |++|++++|.+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..|..+++|+.|+++
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence            3333334443333334445555566666666655544333 445555556666666655544444444444555555554


Q ss_pred             CC-----ccccccccCccccceecccCCCccCCCC--cC--CCCccCccc------------------ccCCccccceee
Q 039599          195 EL-----DNLSDNIGNFKSFEYMGAHGSAISQLPS--LS--SGLVPLSAS------------------LLSGLSLLYWLH  247 (293)
Q Consensus       195 ~~-----~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~--~~l~~l~~~------------------~~~~~~~L~~L~  247 (293)
                      ++     +..|..+..+++|+.|++++|.+.++|.  +.  ..++.|+++                  .++++++|++|+
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN  542 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred             cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence            44     1234444555555555555555555422  11  233333321                  134445556666


Q ss_pred             cCCccCCcCCc-ccCCCCCCcEEeccCCcCCCCchh-HhhcccCCC
Q 039599          248 LNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEGLPAS-IKQISRLES  291 (293)
Q Consensus       248 l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~~p~~-l~~l~~L~~  291 (293)
                      +++|.++.+|. .+..+++|+.|++++|+++++|+. +..+++|+.
T Consensus       543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  588 (680)
T 1ziw_A          543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS  588 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence            66665555543 345555555555555555554433 334444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=5.1e-26  Score=198.23  Aligned_cols=253  Identities=15%  Similarity=0.106  Sum_probs=189.6

Q ss_pred             CCccccEEEEeccceeeecc--c----ceEEEeccCCcccccCCCCCCC-cCceEEeecCCcCCcccCCC---CCCccEE
Q 039599           27 NMSNLRVLKFYIPEISVHMS--I----EEQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCINLTDFPHI---SGNITRL   96 (293)
Q Consensus        27 ~~~~L~~L~l~~~~~~~~~~--~----~l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~---~~~L~~L   96 (293)
                      .++++++++++++.+...+.  +    .|++|++++|.+....+..+.. .+|++|++++|.+....|..   +.+|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46899999999998874442  1    2999999999877666656654 49999999999955444443   4579999


Q ss_pred             ecccccccccCcc-ccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCccc
Q 039599           97 YLDETAIEEVPSS-IKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTIT  175 (293)
Q Consensus        97 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~  175 (293)
                      ++++|.+..+|+. +..+++|++|++++|.+....+..+..+++|++|++++|.+.+.   .+..+++|++|++++|.++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            9999999999885 58899999999999988776677788999999999999977653   2455667777777776654


Q ss_pred             ccC-CCc---------------ccccccCceecCCCC-ccccccccCccccceecccCCCccCC-CCcCCCCccCccccc
Q 039599          176 EQR-PSS---------------FENVKGLETLGFSEL-DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLL  237 (293)
Q Consensus       176 ~~~-~~~---------------~~~~~~L~~L~l~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~  237 (293)
                      +.. +..               ....++|+.|++++| -.-...+..+++|++|++++|.+.+. |.           .+
T Consensus       200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-----------~~  268 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH-----------PF  268 (390)
T ss_dssp             EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG-----------GG
T ss_pred             ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChh-----------Hc
Confidence            310 000               011235555555555 11123455566666666666666555 32           36


Q ss_pred             CCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599          238 SGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       238 ~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      ..+++|++|++++|.++++|..+..+++|+.|++++|+++++|..+..+++|+.||
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY  324 (390)
T ss_dssp             TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred             cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEE
Confidence            78899999999999999988878889999999999999999998898888888764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=3.2e-26  Score=194.84  Aligned_cols=209  Identities=26%  Similarity=0.419  Sum_probs=186.0

Q ss_pred             cCceEEeecCCcCCcccCCCC---CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccc
Q 039599           70 VSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAY  146 (293)
Q Consensus        70 ~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  146 (293)
                      .+++.|++++|. ++.+|..+   .+|++|++++|.+..+|..++.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus        81 ~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            589999999999 55787654   4899999999999999999999999999999999877 678889999999999999


Q ss_pred             ccccCCCCChhhhc---------cccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceeccc
Q 039599          147 GCLNLERFPESLEK---------MEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAH  215 (293)
Q Consensus       147 ~~~~~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~  215 (293)
                      +|...+.+|..+..         +++|++|++++|.++ .+|..+..+++|+.|++++|  ..++..+..+++|++|+++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence            99898888887664         999999999999996 78888999999999999999  6677789999999999999


Q ss_pred             CCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCC-CchhHhhcccCCCC
Q 039599          216 GSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESL  292 (293)
Q Consensus       216 ~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~L~~l  292 (293)
                      +|.+.+. |.           .++++++|++|++++|.+.+ +|..+..+++|+.|++++|++.+ +|+.+..+++|+.+
T Consensus       238 ~n~~~~~~p~-----------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          238 GCTALRNYPP-----------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             TCTTCCBCCC-----------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             CCcchhhhHH-----------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            9887665 55           36788999999999997666 99899999999999999998876 99999999988754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=9.3e-26  Score=210.00  Aligned_cols=272  Identities=17%  Similarity=0.118  Sum_probs=195.0

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeec--cc----ceEEEeccCCcccccCCCCCC-CcCceEEe
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SI----EEQLLDSKGCKILRSFPSNLH-FVSPVTID   76 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~----~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~   76 (293)
                      .++.+  |+++|....+++..|.++++|++|++++|.+....  .+    .|++|++++|.+....+..+. +.+|++|+
T Consensus        26 ~l~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           26 NITVL--NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TCSEE--ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCcEE--ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            34555  88888888888888999999999999988876432  12    289999999876544333454 45999999


Q ss_pred             ecCCcCCcccCCC---CCCccEEecccccccccC-ccccCCCCCCEEEeccCccccccccccc--cccccceeccccccc
Q 039599           77 FTSCINLTDFPHI---SGNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSIC--KLKSLIALSAYGCLN  150 (293)
Q Consensus        77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~  150 (293)
                      +++|.+....|..   +.+|++|++++|.+...+ ..+.++++|++|++++|.+.+..+..+.  .+++|++|++++|.+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            9998854333333   357888899999887554 4678889999999999877665554443  457889999988877


Q ss_pred             CCCCChhhhcc---------------------------ccCCceecCCCcccccCCCccccccc--CceecCCCC---cc
Q 039599          151 LERFPESLEKM---------------------------EHLNQINLGRTTITEQRPSSFENVKG--LETLGFSEL---DN  198 (293)
Q Consensus       151 ~~~~~~~~~~l---------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~~---~~  198 (293)
                      .+..+..+..+                           ++|++|++++|.+.+..+..+..++.  |+.|++++|   +.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            66655555443                           45677777777777777777776654  888888888   33


Q ss_pred             ccccccCccccceecccCCCccCC-CC-cC--CCCccCccc-------------------ccCCccccceeecCCccCCc
Q 039599          199 LSDNIGNFKSFEYMGAHGSAISQL-PS-LS--SGLVPLSAS-------------------LLSGLSLLYWLHLNNCALTS  255 (293)
Q Consensus       199 l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~--~~l~~l~~~-------------------~~~~~~~L~~L~l~~n~i~~  255 (293)
                      .+..+..+++|++|++++|.+.+. |. +.  ..++.|++.                   .+..+++|++|++++|.+++
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            345677888888898888888776 33 22  444444442                   35567788888888888877


Q ss_pred             -CCcccCCCCCCcEEeccCCcCC
Q 039599          256 -IPQEIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       256 -l~~~~~~~~~L~~L~l~~n~l~  277 (293)
                       .+..+..+++|+.|++++|.+.
T Consensus       344 ~~~~~~~~l~~L~~L~Ls~n~~~  366 (680)
T 1ziw_A          344 IKSNMFTGLINLKYLSLSNSFTS  366 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTCBSC
T ss_pred             CChhHhccccCCcEEECCCCchh
Confidence             4456778888888888888754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=2e-25  Score=198.02  Aligned_cols=200  Identities=13%  Similarity=0.147  Sum_probs=146.4

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecC
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTS   79 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~   79 (293)
                      +++.+  |++++...+++  .+..+++|++|++++|.+...+ +.    |++|++++|.+.+. + .-.+++|++|++++
T Consensus        43 ~L~~L--~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           43 TLTSL--DCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDT  115 (457)
T ss_dssp             TCCEE--ECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCS
T ss_pred             CCCEE--EccCCCcccCh--hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCC
Confidence            34445  88988777764  6889999999999999887543 22    99999999986553 3 33455999999999


Q ss_pred             CcCCcccC-CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhh
Q 039599           80 CINLTDFP-HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESL  158 (293)
Q Consensus        80 ~~~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  158 (293)
                      |.+. .+| ..+.+|++|++++|.+..++  ++.+++|++|++++|...+.+  .+..+++|++|++++|.+.+ +|  +
T Consensus       116 N~l~-~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l  187 (457)
T 3bz5_A          116 NKLT-KLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--V  187 (457)
T ss_dssp             SCCS-CCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--C
T ss_pred             CcCC-eecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--c
Confidence            9844 444 34568899999999988764  778888888888888655544  35677888888888886655 33  6


Q ss_pred             hccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCC
Q 039599          159 EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLP  223 (293)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~  223 (293)
                      ..+++|++|++++|.+++.   .+..+++|+.|++++|  ..+|  +..+++|+.|++++|.+.++|
T Consensus       188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence            6777788888888777553   3666777777777777  4444  667777777777777776663

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=1.7e-25  Score=199.35  Aligned_cols=273  Identities=17%  Similarity=0.276  Sum_probs=164.3

Q ss_pred             eEEEEeecCcccceeechhhccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecCC
Q 039599            5 IESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSC   80 (293)
Q Consensus         5 ~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~   80 (293)
                      ++.+  +++++....++  .+..+++|++|++++|.+...+.+.    |++|++++|.+.+..+ .-.+++|++|++++|
T Consensus        48 l~~L--~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           48 VTTL--QADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  122 (466)
T ss_dssp             CCEE--ECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             ccEE--ecCCCCCccCc--chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence            3444  67777666555  4777888888888888876444333    8888888887655433 334458888888888


Q ss_pred             cCCcccC--CCCCCccEEecccccccccCc--------------------cccCCCCCCEEEeccCcccccccccccccc
Q 039599           81 INLTDFP--HISGNITRLYLDETAIEEVPS--------------------SIKCLTNLKLLRINRCTRLKRVSTSICKLK  138 (293)
Q Consensus        81 ~~~~~~~--~~~~~L~~L~l~~~~~~~l~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  138 (293)
                      . .+.++  ..+.+|++|++++|.+..++.                    .+..+++|++|++++|.+.. . ..+..++
T Consensus       123 ~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~  199 (466)
T 1o6v_A          123 Q-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLT  199 (466)
T ss_dssp             C-CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCT
T ss_pred             C-CCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCC
Confidence            7 33343  234578888888887765542                    13344555555555554332 1 1244555


Q ss_pred             ccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccC
Q 039599          139 SLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHG  216 (293)
Q Consensus       139 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~  216 (293)
                      +|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|  ...+. +..+++|++|++++
T Consensus       200 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA  274 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred             CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCC
Confidence            56666666554443322  45566666666666665432  34556666777777666  22222 56667777777777


Q ss_pred             CCccCCCCcC--CCCccCcccc--------cCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhc
Q 039599          217 SAISQLPSLS--SGLVPLSASL--------LSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQI  286 (293)
Q Consensus       217 ~~~~~~~~l~--~~l~~l~~~~--------~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l  286 (293)
                      |.+.+.+.+.  +.++.|+++.        ++.+++|++|++++|.+++++. +..+++|+.|++++|++++++ .+..+
T Consensus       275 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l  352 (466)
T 1o6v_A          275 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANL  352 (466)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred             CccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccC
Confidence            7766663321  4444444331        4455667777777776666443 556677777777777777664 46666


Q ss_pred             ccCCCC
Q 039599          287 SRLESL  292 (293)
Q Consensus       287 ~~L~~l  292 (293)
                      ++|+.|
T Consensus       353 ~~L~~L  358 (466)
T 1o6v_A          353 TNINWL  358 (466)
T ss_dssp             TTCCEE
T ss_pred             CCCCEE
Confidence            666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=2.3e-25  Score=189.77  Aligned_cols=238  Identities=19%  Similarity=0.218  Sum_probs=196.0

Q ss_pred             ccccEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCCC---CCccEEecccc
Q 039599           29 SNLRVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDET  101 (293)
Q Consensus        29 ~~L~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~  101 (293)
                      .+++.++++++.+...+ .+  .++.|++++|.+.+..+..+. +++|++|++++|.+....|..+   .+|++|++++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            47899999888776333 22  399999999987766555565 4599999999999655546554   57999999999


Q ss_pred             cccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCC--CCChhhhccccCCceecCCCcccccCC
Q 039599          102 AIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE--RFPESLEKMEHLNQINLGRTTITEQRP  179 (293)
Q Consensus       102 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~  179 (293)
                      .++.+|..+.  ++|++|++++|.+....+..+..+++|++|++++|.+..  ..+..+..+++|++|++++|.++. +|
T Consensus       111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~  187 (330)
T 1xku_A          111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IP  187 (330)
T ss_dssp             CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CC
T ss_pred             cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CC
Confidence            9999987654  799999999998877666678899999999999997753  567789999999999999999964 55


Q ss_pred             CcccccccCceecCCCC--c-cccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcC
Q 039599          180 SSFENVKGLETLGFSEL--D-NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSI  256 (293)
Q Consensus       180 ~~~~~~~~L~~L~l~~~--~-~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l  256 (293)
                      ..+.  ++|+.|++++|  . ..+..+..+++|++|++++|.+.+.+.-          .+..+++|++|++++|.++.+
T Consensus       188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~l  255 (330)
T 1xku_A          188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG----------SLANTPHLRELHLNNNKLVKV  255 (330)
T ss_dssp             SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT----------TGGGSTTCCEEECCSSCCSSC
T ss_pred             cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh----------hccCCCCCCEEECCCCcCccC
Confidence            5443  78999999998  3 3467788999999999999999887320          256788999999999999999


Q ss_pred             CcccCCCCCCcEEeccCCcCCCCch
Q 039599          257 PQEIGYLSSLEWLHLRGNNLEGLPA  281 (293)
Q Consensus       257 ~~~~~~~~~L~~L~l~~n~l~~~p~  281 (293)
                      |.++..+++|+.|++++|+++++|.
T Consensus       256 p~~l~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             ChhhccCCCcCEEECCCCcCCccCh
Confidence            9999999999999999999998664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=2.9e-25  Score=189.39  Aligned_cols=258  Identities=16%  Similarity=0.134  Sum_probs=205.6

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEeccceeee--cccc----eEEEeccCCcccccCCCCCCCcCceEEee
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVH--MSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDF   77 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l   77 (293)
                      .++.+  ++++|....+++..|..+++|++|++++|.+...  ..+.    |++|++++|.+. .+|..+. .+|++|++
T Consensus        55 ~l~~L--~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-~~L~~L~l  130 (332)
T 2ft3_A           55 DTTLL--DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-SSLVELRI  130 (332)
T ss_dssp             TCCEE--ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-TTCCEEEC
T ss_pred             CCeEE--ECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-ccCCEEEC
Confidence            34555  9999998899888999999999999999998743  2222    999999999865 5666554 79999999


Q ss_pred             cCCcCCcccCC----CCCCccEEeccccccc---ccCccccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599           78 TSCINLTDFPH----ISGNITRLYLDETAIE---EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN  150 (293)
Q Consensus        78 ~~~~~~~~~~~----~~~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  150 (293)
                      ++|.+ +.+|.    .+.+|++|++++|.++   ..+..+..+ +|++|++++|.+.. +|..+.  ++|++|++++|.+
T Consensus       131 ~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i  205 (332)
T 2ft3_A          131 HDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI  205 (332)
T ss_dssp             CSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred             CCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence            99984 44543    3568999999999986   345567777 99999999998665 555443  7999999999988


Q ss_pred             CCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCC-cCC
Q 039599          151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPS-LSS  227 (293)
Q Consensus       151 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~  227 (293)
                      .+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|  ..+|..+..+++|++|++++|.+++++. ...
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence            8777788999999999999999998877778999999999999999  7788889999999999999999998843 211


Q ss_pred             CCccCcccccCCccccceeecCCccCC--c-CCcccCCCCCCcEEeccCCc
Q 039599          228 GLVPLSASLLSGLSLLYWLHLNNCALT--S-IPQEIGYLSSLEWLHLRGNN  275 (293)
Q Consensus       228 ~l~~l~~~~~~~~~~L~~L~l~~n~i~--~-l~~~~~~~~~L~~L~l~~n~  275 (293)
                      ....     ....+.++.|++++|.+.  + .|.++..+++|+.+++++|+
T Consensus       286 ~~~~-----~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          286 PVGF-----GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSC-----CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccc-----ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            1100     112467899999999887  3 55678889999999999884

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.9e-25  Score=204.83  Aligned_cols=253  Identities=14%  Similarity=0.089  Sum_probs=191.5

Q ss_pred             CCccccEEEEeccceeeecc------cceEEEeccCCcccccCCCCCCCc-CceEEeecCCcCCcccCCC---CCCccEE
Q 039599           27 NMSNLRVLKFYIPEISVHMS------IEEQLLDSKGCKILRSFPSNLHFV-SPVTIDFTSCINLTDFPHI---SGNITRL   96 (293)
Q Consensus        27 ~~~~L~~L~l~~~~~~~~~~------~~l~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~---~~~L~~L   96 (293)
                      .+++++.+++++|.+...+.      -.|++|++++|.+.+..+..+... +|++|++++|.+....|..   +.+|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            45788999999998874432      139999999999877766666644 9999999999955544433   4589999


Q ss_pred             ecccccccccCcc-ccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCccc
Q 039599           97 YLDETAIEEVPSS-IKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTIT  175 (293)
Q Consensus        97 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~  175 (293)
                      ++++|.+..+|+. |..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..   +..+++|++|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            9999999999885 589999999999999988877778999999999999999776532   455667777777776664


Q ss_pred             ccCC-Ccc---------------cccccCceecCCCC-ccccccccCccccceecccCCCccCC-CCcCCCCccCccccc
Q 039599          176 EQRP-SSF---------------ENVKGLETLGFSEL-DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLL  237 (293)
Q Consensus       176 ~~~~-~~~---------------~~~~~L~~L~l~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~  237 (293)
                      +... ..+               ...++|+.|++++| -.-+..+..+++|+.|++++|.+.+. |.           .+
T Consensus       206 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~-----------~~  274 (597)
T 3oja_B          206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH-----------PF  274 (597)
T ss_dssp             EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG-----------GG
T ss_pred             cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHH-----------Hh
Confidence            3110 000               01134555666555 11234555666666666666666655 33           36


Q ss_pred             CCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599          238 SGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       238 ~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      +.+++|+.|++++|.++++|..+..+++|+.|++++|.++++|..+..+++|+.||
T Consensus       275 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY  330 (597)
T ss_dssp             TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred             cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEE
Confidence            78899999999999999988888889999999999999999999998899888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=1.8e-25  Score=212.57  Aligned_cols=283  Identities=16%  Similarity=0.128  Sum_probs=219.6

Q ss_pred             EEEeecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccC-CCCCCC-cCceEEeec
Q 039599            7 SIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSF-PSNLHF-VSPVTIDFT   78 (293)
Q Consensus         7 ~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~-~~~~~~-~~L~~L~l~   78 (293)
                      +...|.+++....++.    -.+++++|++++|.+....  .+.    |++|++++|.....+ |..+.. .+|++|+++
T Consensus         6 ~~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            6 GRIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             TEEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             ceEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            3445888888887774    3478999999999987432  222    999999999766666 566654 499999999


Q ss_pred             CCcCCcccCCCC---CCccEEecccccccc-cCcc--ccCCCCCCEEEeccCccccccc-cccccccccceecccccccC
Q 039599           79 SCINLTDFPHIS---GNITRLYLDETAIEE-VPSS--IKCLTNLKLLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNL  151 (293)
Q Consensus        79 ~~~~~~~~~~~~---~~L~~L~l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  151 (293)
                      +|.+....|..+   .+|++|++++|.+.. ++..  +..+++|++|++++|.+.+..+ ..++++++|++|++++|.+.
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            999666657654   478999999999974 4554  8899999999999998876544 56899999999999999888


Q ss_pred             CCCChhhhcc--ccCCceecCCCcccccCCCccccccc------CceecCCCC---cccccccc----------------
Q 039599          152 ERFPESLEKM--EHLNQINLGRTTITEQRPSSFENVKG------LETLGFSEL---DNLSDNIG----------------  204 (293)
Q Consensus       152 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~------L~~L~l~~~---~~l~~~~~----------------  204 (293)
                      +..+..+..+  ++|+.|++++|.+.+..+..+..+.+      |+.|++++|   ...+..+.                
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            8888888877  89999999999998877776666555      999999988   22221111                


Q ss_pred             --------------------C--ccccceecccCCCccCC-CCcC---CCCccCccc----------ccCCccccceeec
Q 039599          205 --------------------N--FKSFEYMGAHGSAISQL-PSLS---SGLVPLSAS----------LLSGLSLLYWLHL  248 (293)
Q Consensus       205 --------------------~--l~~L~~L~l~~~~~~~~-~~l~---~~l~~l~~~----------~~~~~~~L~~L~l  248 (293)
                                          .  .++++.|++++|.+.+. |...   +.++.|+++          .+.++++|++|++
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence                                1  25789999999988777 3322   556666553          3677889999999


Q ss_pred             CCccCCc-CCcccCCCCCCcEEeccCCcCCCCc-hhHhhcccCCCCC
Q 039599          249 NNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLP-ASIKQISRLESLD  293 (293)
Q Consensus       249 ~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p-~~l~~l~~L~~ld  293 (293)
                      ++|.+++ .|..+..+++|+.|++++|+++.++ ..+..+++|+.|+
T Consensus       322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  368 (844)
T 3j0a_A          322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD  368 (844)
T ss_dssp             ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred             CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence            9999888 4677888999999999999998855 4577788887653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=6e-25  Score=194.81  Aligned_cols=253  Identities=19%  Similarity=0.213  Sum_probs=167.4

Q ss_pred             ecCcccceeechhhccCCccccEEEEeccceeeeccc--ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCC
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSI--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPH   88 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~   88 (293)
                      ++++|....++.    .+++|++|++++|.+...+..  .+++|++++|.+.+ +|....+.+|++|++++|. .+.+|.
T Consensus        97 ~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~-l~~lp~  170 (454)
T 1jl5_A           97 VASCNSLTELPE----LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS-LKKLPD  170 (454)
T ss_dssp             ECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSCCCC
T ss_pred             EccCCcCCcccc----ccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc-CcccCC
Confidence            555555444432    236788888888877643333  48999999987654 6754445599999999998 556888


Q ss_pred             CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCcee
Q 039599           89 ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQIN  168 (293)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  168 (293)
                      ...+|++|++++|.+..+| .+..+++|++|++++|.+.+ +|..   .++|++|++++|.+. .+|. +..+++|++|+
T Consensus       171 ~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~  243 (454)
T 1jl5_A          171 LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIY  243 (454)
T ss_dssp             CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEE
T ss_pred             CcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEE
Confidence            8889999999999998887 58889999999999987654 4432   247888888888665 5663 77888888888


Q ss_pred             cCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCC-------------------
Q 039599          169 LGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSS-------------------  227 (293)
Q Consensus       169 l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~-------------------  227 (293)
                      +++|.+++ +|..   .++|+.|++++|  ..++..   .++|+++++++|.+.++|.+.+                   
T Consensus       244 l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~  316 (454)
T 1jl5_A          244 ADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP  316 (454)
T ss_dssp             CCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCC
T ss_pred             CCCCcCCc-cccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCc
Confidence            88888854 4432   356777777666  333322   2455555555555554433222                   


Q ss_pred             -CCccCcccc--c----CCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC---CchhHhhc
Q 039599          228 -GLVPLSASL--L----SGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG---LPASIKQI  286 (293)
Q Consensus       228 -~l~~l~~~~--~----~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~---~p~~l~~l  286 (293)
                       .++.|+++.  +    ..+++|++|++++|.++.+|.   .+++|+.|++++|++++   +|.++..+
T Consensus       317 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          317 PSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             CcCCEEECCCCccccccccCCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence             333333321  1    123556666666666666665   36777778888777776   55566555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.6e-25  Score=188.73  Aligned_cols=219  Identities=16%  Similarity=0.200  Sum_probs=177.9

Q ss_pred             eEEEeccCCcccccCCC-CC-CCcCceEEeecCCcCCcc--cC---CCCCCccEEecccccccccCccccCCCCCCEEEe
Q 039599           49 EQLLDSKGCKILRSFPS-NL-HFVSPVTIDFTSCINLTD--FP---HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRI  121 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~--~~---~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  121 (293)
                      +++|++++|.+. .+|. .+ .+++|++|++++|.+...  .+   ....+|++|++++|.+..+|..+..+++|++|++
T Consensus        30 l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l  108 (306)
T 2z66_A           30 ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF  108 (306)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred             CCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence            555555555543 3444 33 345999999999985422  12   2356899999999999999988999999999999


Q ss_pred             ccCccccccc-cccccccccceecccccccCCCCChhhhccccCCceecCCCcccc-cCCCcccccccCceecCCCC--c
Q 039599          122 NRCTRLKRVS-TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITE-QRPSSFENVKGLETLGFSEL--D  197 (293)
Q Consensus       122 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~--~  197 (293)
                      ++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|  .
T Consensus       109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  188 (306)
T 2z66_A          109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  188 (306)
T ss_dssp             TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence            9988766444 467889999999999998887788889999999999999999976 57788899999999999998  3


Q ss_pred             c-ccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCC-CCcEEeccCC
Q 039599          198 N-LSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLS-SLEWLHLRGN  274 (293)
Q Consensus       198 ~-l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~-~L~~L~l~~n  274 (293)
                      . .+..+..+++|++|++++|.+.+++..          .+..+++|++|++++|.+++ .|..+..++ +|+.|++++|
T Consensus       189 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTF----------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCSBCCSG----------GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             CcCHHHhcCCCCCCEEECCCCccCccChh----------hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence            3 366788999999999999999888441          25678999999999999988 666788874 9999999999


Q ss_pred             cCCC
Q 039599          275 NLEG  278 (293)
Q Consensus       275 ~l~~  278 (293)
                      +++.
T Consensus       259 ~~~~  262 (306)
T 2z66_A          259 DFAC  262 (306)
T ss_dssp             CEEC
T ss_pred             Ceec
Confidence            9975

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=5.4e-25  Score=200.70  Aligned_cols=254  Identities=20%  Similarity=0.212  Sum_probs=210.9

Q ss_pred             ecCcc-cceeechhhccCCccccEEEEeccceeeecc----cceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcc
Q 039599           11 NLSTI-KGINLNLRAFSNMSNLRVLKFYIPEISVHMS----IEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTD   85 (293)
Q Consensus        11 ~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   85 (293)
                      +++++ ......+..|..+++|++|++++|.+...+.    ..+++|++++|.+. .+|. ..+++|+.|++++|.....
T Consensus       263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCB
T ss_pred             hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCccc-ccCc-ccccccCEEeCcCCccccc
Confidence            44444 3334445678889999999999998763321    24899999999865 5555 3566999999999996666


Q ss_pred             cC-CCCCCccEEeccccccccc---CccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC-hhhhc
Q 039599           86 FP-HISGNITRLYLDETAIEEV---PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEK  160 (293)
Q Consensus        86 ~~-~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~  160 (293)
                      ++ ..+.+|++|++++|.+...   +..+..+++|++|++++|.+... +..+..+++|++|++++|.+.+..+ ..+..
T Consensus       341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  419 (570)
T 2z63_A          341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS  419 (570)
T ss_dssp             CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred             cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhc
Confidence            55 3567999999999998755   56788999999999999987664 4448899999999999998877655 56889


Q ss_pred             cccCCceecCCCcccccCCCcccccccCceecCCCC----ccccccccCccccceecccCCCccCC-CCcCCCCccCccc
Q 039599          161 MEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL----DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSAS  235 (293)
Q Consensus       161 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~----~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~  235 (293)
                      +++|++|++++|.+.+..+..+..+++|+.|++++|    +.+|..+..+++|++|++++|.+.+. |.           
T Consensus       420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-----------  488 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-----------  488 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-----------
T ss_pred             CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-----------
Confidence            999999999999998888888999999999999999    25788899999999999999999887 54           


Q ss_pred             ccCCccccceeecCCccCCcCC-cccCCCCCCcEEeccCCcCCC
Q 039599          236 LLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       236 ~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~  278 (293)
                      .+..+++|++|++++|.+++++ ..+..+++|+.|++++|++++
T Consensus       489 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            3668899999999999999955 568899999999999999986

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=1.9e-24  Score=191.56  Aligned_cols=263  Identities=19%  Similarity=0.236  Sum_probs=173.7

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeeccc--ceEEEeccCCcccccCCCCCCCcCceEEeecCCc
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSI--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCI   81 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~   81 (293)
                      .++.+  ++++|....++  .|..+++|++|++++|.+...+..  .+++|++++|.+.+ +|....+++|++|++++|.
T Consensus       132 ~L~~L--~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          132 LLEYL--GVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             TCCEE--ECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC
T ss_pred             CCCEE--ECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-CccccCCCCCCEEECCCCc
Confidence            34444  88888777665  588999999999999988743322  49999999997655 6654455699999999998


Q ss_pred             CCcccCCCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhcc
Q 039599           82 NLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKM  161 (293)
Q Consensus        82 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l  161 (293)
                       .+.+|....+|++|++++|.+..+|. +..+++|++|++++|.+.+ +|.   ..++|++|++++|.+.+ +|..   .
T Consensus       207 -l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~  276 (454)
T 1jl5_A          207 -LKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---P  276 (454)
T ss_dssp             -CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---C
T ss_pred             -CCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---c
Confidence             55577777899999999999998884 8899999999999987654 443   24789999999987664 5443   3


Q ss_pred             ccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCc-cccceecccCCCccCCCCcCCCCccCcccc--
Q 039599          162 EHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNF-KSFEYMGAHGSAISQLPSLSSGLVPLSASL--  236 (293)
Q Consensus       162 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l-~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~--  236 (293)
                      ++|++|++++|.+++ ++..   .++|+.|++++|  ..++    .+ ++|++|++++|.+.++|...+.++.|+++.  
T Consensus       277 ~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~  348 (454)
T 1jl5_A          277 QSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPALPPRLERLIASFNH  348 (454)
T ss_dssp             TTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCccc----CCcCcCCEEECCCCccccccccCCcCCEEECCCCc
Confidence            678999999998865 2211   256778888777  2222    22 477888888888777766445666666542  


Q ss_pred             cC----CccccceeecCCccCCc---CCcccCCC-------------CCCcEEeccCCcCCCCchhHhhcccC
Q 039599          237 LS----GLSLLYWLHLNNCALTS---IPQEIGYL-------------SSLEWLHLRGNNLEGLPASIKQISRL  289 (293)
Q Consensus       237 ~~----~~~~L~~L~l~~n~i~~---l~~~~~~~-------------~~L~~L~l~~n~l~~~p~~l~~l~~L  289 (293)
                      +.    .+++|++|++++|.+++   +|.++..+             ++|+.|++++|+++++|..-..+..|
T Consensus       349 l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          349 LAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred             cccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence            11    35789999999999887   66677666             88999999999999954433333333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=3.8e-24  Score=189.80  Aligned_cols=249  Identities=15%  Similarity=0.131  Sum_probs=146.1

Q ss_pred             ecCcccceeechhhccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecCCc-----
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCI-----   81 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-----   81 (293)
                      ++++|....++   +..+++|++|++++|.+...+ +.    |++|++++|.+.+ ++ .-.+++|++|++++|.     
T Consensus        70 ~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l~  143 (457)
T 3bz5_A           70 ICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEID  143 (457)
T ss_dssp             ECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCCC
T ss_pred             EccCCcCCeEc---cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccceec
Confidence            66666555442   556666666666666654322 21    5666666655433 22 1122355555555554     


Q ss_pred             ----------------CCcccC-CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceec
Q 039599           82 ----------------NLTDFP-HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALS  144 (293)
Q Consensus        82 ----------------~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  144 (293)
                                      ..+.++ ..+.+|++|++++|.++.+|  +..+++|++|++++|.+.+.   .+..+++|++|+
T Consensus       144 l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~  218 (457)
T 3bz5_A          144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLD  218 (457)
T ss_dssp             CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEE
T ss_pred             cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEE
Confidence                            233321 12335555566666655554  55566666666666654442   255666666666


Q ss_pred             ccccccCCCCChhhhccccCCceecCCCcccccCCCcccccc-------cCceecCCCC---ccccccccCccccceecc
Q 039599          145 AYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVK-------GLETLGFSEL---DNLSDNIGNFKSFEYMGA  214 (293)
Q Consensus       145 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-------~L~~L~l~~~---~~l~~~~~~l~~L~~L~l  214 (293)
                      +++|.+.+ +|  +..+++|++|++++|.+++..+..+.+++       +|+.+++++|   +.+|  +..+++|+.|++
T Consensus       219 Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~L  293 (457)
T 3bz5_A          219 CSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDV  293 (457)
T ss_dssp             CCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCC
T ss_pred             CcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEEC
Confidence            66665554 33  55666677777777766554333333222       3444555544   2222  345677777777


Q ss_pred             cCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCc
Q 039599          215 HGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLP  280 (293)
Q Consensus       215 ~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p  280 (293)
                      ++|...+. |.-...++.++   ++++++|++|++++|.+++++  ++.+++|+.|++++|++++++
T Consensus       294 s~n~~l~~l~~~~~~L~~L~---l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~  355 (457)
T 3bz5_A          294 THNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS  355 (457)
T ss_dssp             TTCTTCCEEECTTCCCSCCC---CTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT
T ss_pred             CCCcccceeccCCCcceEec---hhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc
Confidence            77764433 33224455554   567789999999999999874  888999999999999999865

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.1e-24  Score=181.83  Aligned_cols=216  Identities=16%  Similarity=0.191  Sum_probs=174.3

Q ss_pred             EEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEeccccccccc-CccccCCCCCCEEEeccCc
Q 039599           50 QLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEV-PSSIKCLTNLKLLRINRCT  125 (293)
Q Consensus        50 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~  125 (293)
                      +.+++.++. +..+|..+ ..++++|++++|.+....+..   +.+|++|++++|.+..+ +..+..+++|++|++++|.
T Consensus        14 ~~~~c~~~~-l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQG-LQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSC-CSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCC-cccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            456666654 34556543 248999999999854433333   45899999999999877 5578899999999999987


Q ss_pred             -cccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccc-
Q 039599          126 -RLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSD-  201 (293)
Q Consensus       126 -~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-  201 (293)
                       +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|  ..++. 
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence             44444677889999999999999888777888999999999999999997666667888999999999998  44444 


Q ss_pred             cccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC
Q 039599          202 NIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       202 ~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~  278 (293)
                      .+..+++|++|++++|.+.+. |.           .+..+++|++|++++|.+++++. .+..+++|+.|++++|++..
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~-----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPH-----------AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTT-----------TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             HhcCccccCEEECCCCcccccCHh-----------HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            578899999999999998877 44           35678899999999999999664 58899999999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=3.2e-27  Score=199.72  Aligned_cols=241  Identities=16%  Similarity=0.119  Sum_probs=176.8

Q ss_pred             hccCCccccEEEEeccceeeecccc--eEEEeccCCccc-ccCCCCC--------CCcCceEEeecCCcCCcccCCC---
Q 039599           24 AFSNMSNLRVLKFYIPEISVHMSIE--EQLLDSKGCKIL-RSFPSNL--------HFVSPVTIDFTSCINLTDFPHI---   89 (293)
Q Consensus        24 ~~~~~~~L~~L~l~~~~~~~~~~~~--l~~L~l~~~~~~-~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~---   89 (293)
                      .+...++|+++++++|.+..+..+.  ++.|++++|.+. ..+|..+        .+.+|++|++++|.+.+.+|..   
T Consensus        38 ~~~~~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEEEEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             EEccCCCceeEeecccccccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            3455667888888887773332222  777888887763 3344433        2568999999998866666654   


Q ss_pred             --CCCccEEecccccccccCccccCC-----CCCCEEEeccCccccccccccccccccceecccccccCCC--CChhh--
Q 039599           90 --SGNITRLYLDETAIEEVPSSIKCL-----TNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLER--FPESL--  158 (293)
Q Consensus        90 --~~~L~~L~l~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~--  158 (293)
                        +.+|++|++++|.+..+|..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+..+  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence              347888899999888777767666     8899999999888776667788889999999998876543  23333  


Q ss_pred             hccccCCceecCCCcccc--cCC-CcccccccCceecCCCC--cc-cc-ccccCccccceecccCCCccCCCCcCCCCcc
Q 039599          159 EKMEHLNQINLGRTTITE--QRP-SSFENVKGLETLGFSEL--DN-LS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVP  231 (293)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~--~~~-~~~~~~~~L~~L~l~~~--~~-l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~  231 (293)
                      ..+++|++|++++|.+++  ..+ ..+..+++|+.|++++|  .. .+ ..+..+++|++|++++|.++.+|..      
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~------  271 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG------  271 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS------
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh------
Confidence            778889999999998862  122 23346788999999888  22 22 3455678899999999988877651      


Q ss_pred             CcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC
Q 039599          232 LSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       232 l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~  278 (293)
                           +.  ++|++|++++|.|+++|. +..+++|+.|++++|++++
T Consensus       272 -----~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          272 -----LP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -----CC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             -----cc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence                 22  678999999999988876 8888999999999998875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=9.6e-25  Score=183.99  Aligned_cols=228  Identities=19%  Similarity=0.227  Sum_probs=186.6

Q ss_pred             EEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC----CCCccEEeccccccccc---CccccCCCCCCEEEecc
Q 039599           51 LLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI----SGNITRLYLDETAIEEV---PSSIKCLTNLKLLRINR  123 (293)
Q Consensus        51 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~  123 (293)
                      .+++.++. +..+|..+. .++++|++++|. ++.+|..    +.+|++|++++|.+..+   +..+..+++|++|++++
T Consensus        11 ~l~c~~~~-l~~ip~~~~-~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKG-LTSVPTGIP-SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSC-CSSCCSCCC-TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCC-cccCCCCCC-CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            34555544 345565432 489999999998 4566643    45899999999998755   56777899999999999


Q ss_pred             CccccccccccccccccceecccccccCCCCC-hhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--c--c
Q 039599          124 CTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--D--N  198 (293)
Q Consensus       124 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~--~  198 (293)
                      |.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|  .  .
T Consensus        88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            9865 466678899999999999998776554 57889999999999999998888888999999999999999  2  4


Q ss_pred             ccccccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcC
Q 039599          199 LSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNL  276 (293)
Q Consensus       199 l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l  276 (293)
                      .+..+..+++|++|++++|.+.+. |.           .+..+++|++|++++|.+++++. .+..+++|+.|++++|++
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPT-----------AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTT-----------TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHH-----------HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            688899999999999999999887 44           35688999999999999998654 688899999999999999


Q ss_pred             CC-CchhHhhcc-cCCCCC
Q 039599          277 EG-LPASIKQIS-RLESLD  293 (293)
Q Consensus       277 ~~-~p~~l~~l~-~L~~ld  293 (293)
                      ++ .|..+..++ +|+.||
T Consensus       236 ~~~~~~~~~~~~~~L~~L~  254 (306)
T 2z66_A          236 MTSKKQELQHFPSSLAFLN  254 (306)
T ss_dssp             CBCSSSSCCCCCTTCCEEE
T ss_pred             cccCHHHHHhhhccCCEEE
Confidence            97 666677764 777653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=1.1e-24  Score=197.98  Aligned_cols=164  Identities=18%  Similarity=0.179  Sum_probs=104.5

Q ss_pred             CCCCCCEEEeccCccccccc---cccccccccceecccccccCCCCC--hhhhccccCCceecCCCcccccCCCcccccc
Q 039599          112 CLTNLKLLRINRCTRLKRVS---TSICKLKSLIALSAYGCLNLERFP--ESLEKMEHLNQINLGRTTITEQRPSSFENVK  186 (293)
Q Consensus       112 ~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  186 (293)
                      .+++|++|++++|.+.+..|   ..+..+++|++|++++|.+.+..+  ..+..+++|++|++++|.++ .+|..+..++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~  410 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE  410 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence            45566666666665554332   224455666666666664443211  34666777777777777774 5666666777


Q ss_pred             cCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccc--------cCCccccceeecCCccCCcC
Q 039599          187 GLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL--------LSGLSLLYWLHLNNCALTSI  256 (293)
Q Consensus       187 ~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~--------~~~~~~L~~L~l~~n~i~~l  256 (293)
                      +|++|++++|  ..++..+  .++|++|++++|.+++++.-.+.++.|+++.        ...+++|++|++++|.++++
T Consensus       411 ~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~  488 (549)
T 2z81_A          411 KMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSV  488 (549)
T ss_dssp             TCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCC
T ss_pred             cccEEECCCCCcccccchh--cCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCc
Confidence            7777777777  3333322  1356666666666555532123444444331        34578899999999999995


Q ss_pred             -CcccCCCCCCcEEeccCCcCCC
Q 039599          257 -PQEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       257 -~~~~~~~~~L~~L~l~~n~l~~  278 (293)
                       |.++..+++|+.|++++|++.+
T Consensus       489 ~~~~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          489 PDGIFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             CTTGGGGCTTCCEEECCSSCBCC
T ss_pred             CHHHHhcCcccCEEEecCCCccC
Confidence             4568999999999999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=2.5e-25  Score=191.34  Aligned_cols=253  Identities=18%  Similarity=0.144  Sum_probs=170.0

Q ss_pred             ccccEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCCC---CCccEEecccc
Q 039599           29 SNLRVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDET  101 (293)
Q Consensus        29 ~~L~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~  101 (293)
                      +.....+.+++.+...+ .+  .+++|++++|.+....+..+. +++|++|++++|.+....|..+   .+|++|++++|
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN  110 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence            33344555555554222 12  267777777765544343443 4488888888887444334333   46788888888


Q ss_pred             cccccCcc-ccCCCCCCEEEeccCccccccc-cccccccccceecccccccC-CCCChhhhccccCCceecCCCcccccC
Q 039599          102 AIEEVPSS-IKCLTNLKLLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNL-ERFPESLEKMEHLNQINLGRTTITEQR  178 (293)
Q Consensus       102 ~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~  178 (293)
                      .+..++.. +..+++|++|++++|.+....+ ..+..+++|++|++++|... ...+..+..+++|++|++++|.+++..
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  190 (353)
T 2z80_A          111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE  190 (353)
T ss_dssp             CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence            88877764 6778888888888876654322 35677888888888887433 333566777888888888888887777


Q ss_pred             CCcccccccCceecCCCC--cccccc-ccCccccceecccCCCccCCCC--cC-----CCCccCccc-------------
Q 039599          179 PSSFENVKGLETLGFSEL--DNLSDN-IGNFKSFEYMGAHGSAISQLPS--LS-----SGLVPLSAS-------------  235 (293)
Q Consensus       179 ~~~~~~~~~L~~L~l~~~--~~l~~~-~~~l~~L~~L~l~~~~~~~~~~--l~-----~~l~~l~~~-------------  235 (293)
                      +..+..+++|+.|++++|  ..++.. +..+++|++|++++|.+.+.+.  +.     ..++.+++.             
T Consensus       191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~  270 (353)
T 2z80_A          191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM  270 (353)
T ss_dssp             TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred             HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence            777778888888888877  344433 3347788888888888776521  11     122222211             


Q ss_pred             -ccCCccccceeecCCccCCcCCcc-cCCCCCCcEEeccCCcCCCCch
Q 039599          236 -LLSGLSLLYWLHLNNCALTSIPQE-IGYLSSLEWLHLRGNNLEGLPA  281 (293)
Q Consensus       236 -~~~~~~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~l~~~p~  281 (293)
                       .+..+++|++|++++|.++.+|.. +..+++|+.|++++|++.+.++
T Consensus       271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence             256778999999999999998876 4889999999999999987544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=7e-24  Score=195.43  Aligned_cols=121  Identities=18%  Similarity=0.147  Sum_probs=92.9

Q ss_pred             eEEEEeecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCC-CcCceEEee
Q 039599            5 IESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLH-FVSPVTIDF   77 (293)
Q Consensus         5 ~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l   77 (293)
                      ++.+  |+++|....+++.+|.++++|++|++++|.+...+  .+.    |++|++++|.+....+..+. +.+|++|++
T Consensus        54 ~~~L--dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           54 TKNL--DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             CCEE--ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCEE--EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            4445  99999999999889999999999999999887332  232    99999999986554444554 459999999


Q ss_pred             cCCcCCcccCC----CCCCccEEecccccccc--cCccccCCCCCCEEEeccCcccc
Q 039599           78 TSCINLTDFPH----ISGNITRLYLDETAIEE--VPSSIKCLTNLKLLRINRCTRLK  128 (293)
Q Consensus        78 ~~~~~~~~~~~----~~~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~  128 (293)
                      ++|. ++.+|.    .+.+|++|++++|.+..  +|..+..+++|++|++++|.+.+
T Consensus       132 s~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          132 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            9998 444543    23578899999998864  46677888999999988876543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=7.5e-26  Score=191.75  Aligned_cols=239  Identities=12%  Similarity=0.112  Sum_probs=112.8

Q ss_pred             ecCcccceeechhhccCCccccEEEEeccceeeec--cc----ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCc
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SI----EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLT   84 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~----~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   84 (293)
                      +++.+.........+..+++|++|++++|.+....  .+    .|++|++++|.+.+..+ .-.+++|++|++++|    
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n----   90 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN----   90 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS----
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC----
Confidence            44444444444445566667777777777654321  11    14555555544333222 112234555555544    


Q ss_pred             ccCCCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccC
Q 039599           85 DFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHL  164 (293)
Q Consensus        85 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  164 (293)
                                       .+..++.    .++|++|++++|.+....+.   .+++|++|++++|.+.+..+..+..+++|
T Consensus        91 -----------------~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L  146 (317)
T 3o53_A           91 -----------------YVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV  146 (317)
T ss_dssp             -----------------EEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE
T ss_pred             -----------------ccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC
Confidence                             4443331    14444555544443332221   23444555555544443333344444555


Q ss_pred             CceecCCCcccccCCCccc-ccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCcc
Q 039599          165 NQINLGRTTITEQRPSSFE-NVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLS  241 (293)
Q Consensus       165 ~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~  241 (293)
                      ++|++++|.+++..+..+. .+++|++|++++|  ..++ ....+++|++|++++|.+.++|.           .+..++
T Consensus       147 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~-----------~~~~l~  214 (317)
T 3o53_A          147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGP-----------EFQSAA  214 (317)
T ss_dssp             EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEECG-----------GGGGGT
T ss_pred             CEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECCCCcCCcchh-----------hhcccC
Confidence            5555555554433333332 3445555555554  2222 12235555555555555555432           133455


Q ss_pred             ccceeecCCccCCcCCcccCCCCCCcEEeccCCcCC-C-CchhHhhcccCC
Q 039599          242 LLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLE-G-LPASIKQISRLE  290 (293)
Q Consensus       242 ~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~-~-~p~~l~~l~~L~  290 (293)
                      +|++|++++|.++.+|..+..+++|+.|++++|+++ + +|.++..+++|+
T Consensus       215 ~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~  265 (317)
T 3o53_A          215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (317)
T ss_dssp             TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred             cccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence            566666666666555555555666666666666665 2 455555444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=8.1e-25  Score=188.13  Aligned_cols=214  Identities=13%  Similarity=0.100  Sum_probs=114.2

Q ss_pred             cccEEEEeccceeeecc--cc----eEEEeccCCcccccCCCCCCC-cCceEEeecCCcCCcccCC----CCCCccEEec
Q 039599           30 NLRVLKFYIPEISVHMS--IE----EQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCINLTDFPH----ISGNITRLYL   98 (293)
Q Consensus        30 ~L~~L~l~~~~~~~~~~--~~----l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l   98 (293)
                      +|++|++++|.+...+.  +.    |++|++++|.+.+..+..+.. ++|++|++++|.+ +.+|.    .+.+|++|++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEEC
Confidence            45555555554442211  11    555555555444433333332 2555555555542 22321    2334555555


Q ss_pred             ccccccccCc--cccCCCCCCEEEeccCcccc-ccccccccccccceecccccccCCCCChhhhccccCCceecCCCccc
Q 039599           99 DETAIEEVPS--SIKCLTNLKLLRINRCTRLK-RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTIT  175 (293)
Q Consensus        99 ~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~  175 (293)
                      ++|.+..+|.  .+..+++|++|++++|.... ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            5555555444  34455555555555543222 22334445555555555555444444444555555555555555442


Q ss_pred             ccCCC-cccccccCceecCCCC----------------------------------ccccccccCccccceecccCCCcc
Q 039599          176 EQRPS-SFENVKGLETLGFSEL----------------------------------DNLSDNIGNFKSFEYMGAHGSAIS  220 (293)
Q Consensus       176 ~~~~~-~~~~~~~L~~L~l~~~----------------------------------~~l~~~~~~l~~L~~L~l~~~~~~  220 (293)
                      . ++. .+..+++|+.|++++|                                  ..++..+..+++|++|++++|.+.
T Consensus       212 ~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          212 L-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             T-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred             c-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence            2 222 1223444444444444                                  134566788999999999999999


Q ss_pred             CCCCcCCCCccCcccccCCccccceeecCCccCCc
Q 039599          221 QLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS  255 (293)
Q Consensus       221 ~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~  255 (293)
                      .+|..          .+..+++|++|++++|.++.
T Consensus       291 ~i~~~----------~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          291 SVPDG----------IFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCCTT----------TTTTCTTCCEEECCSSCBCC
T ss_pred             ccCHH----------HHhcCCCCCEEEeeCCCccC
Confidence            88651          14688999999999998876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.8e-23  Score=191.13  Aligned_cols=254  Identities=20%  Similarity=0.206  Sum_probs=172.2

Q ss_pred             eecCcccceeechhhccCCccccEEEEeccceeeecc-c-ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccC
Q 039599           10 LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMS-I-EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFP   87 (293)
Q Consensus        10 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~-~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~   87 (293)
                      ++++++....++. .+.  ++|++|++++|.+...+. . .|++|++++|.+. .+|.  ..++|++|++++|. ++.+|
T Consensus        45 L~ls~n~L~~lp~-~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~-l~~l~  117 (622)
T 3g06_A           45 LNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSNP-LTHLP  117 (622)
T ss_dssp             EECCSSCCSCCCS-CCC--TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSCC-CCCCC
T ss_pred             EEecCCCcCccCh-hhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCCc-CCCCC
Confidence            3888887777765 333  789999999998874332 2 3999999998754 4565  45689999999988 66677


Q ss_pred             CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCce
Q 039599           88 HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQI  167 (293)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  167 (293)
                      ..+.+|++|++++|.+..+|..   +++|++|++++|.+.. +|.   ...+|+.|++++|.+.. +|   ..+++|+.|
T Consensus       118 ~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L  186 (622)
T 3g06_A          118 ALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQEL  186 (622)
T ss_dssp             CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEE
T ss_pred             CCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEE
Confidence            7778899999999998888864   4789999999887654 333   34567777777775543 44   345677777


Q ss_pred             ecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccc--c----CC
Q 039599          168 NLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL--L----SG  239 (293)
Q Consensus       168 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~--~----~~  239 (293)
                      ++++|.+++ +|..   .++|+.|++++|  ..++.   ..++|+.|++++|.++++|...+.++.|+++.  +    ..
T Consensus       187 ~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~~  259 (622)
T 3g06_A          187 SVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML  259 (622)
T ss_dssp             ECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC
T ss_pred             ECCCCCCCC-CCCc---cchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCcc
Confidence            777777753 3332   356667777666  33332   23566677777776666654333444444321  1    13


Q ss_pred             ccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHhhccc
Q 039599          240 LSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISR  288 (293)
Q Consensus       240 ~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~  288 (293)
                      +++|+.|++++|.|+.+|..+..+++|+.|++++|++++ .|..+..++.
T Consensus       260 ~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             CTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred             cccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence            456788888888887777777778888888888888876 5555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=7.1e-24  Score=176.92  Aligned_cols=197  Identities=16%  Similarity=0.177  Sum_probs=131.7

Q ss_pred             eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCC---CCCccEEeccccc-cccc-CccccCCCCCCEEEec
Q 039599           49 EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETA-IEEV-PSSIKCLTNLKLLRIN  122 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~l-~~~~~~l~~L~~L~l~  122 (293)
                      +++|++++|.+....+..+. +++|++|++++|.+....|..   +.+|++|++++|. +..+ +..+..+++|++|+++
T Consensus        34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~  113 (285)
T 1ozn_A           34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (285)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence            77777777776554444444 347777777777644333433   3467777777776 6666 4466777777777777


Q ss_pred             cCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---ccc
Q 039599          123 RCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNL  199 (293)
Q Consensus       123 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l  199 (293)
                      +|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|   +..
T Consensus       114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  193 (285)
T 1ozn_A          114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (285)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence            77766655666677777777777777666555556777777777777777776555555677777777777777   233


Q ss_pred             cccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc
Q 039599          200 SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS  255 (293)
Q Consensus       200 ~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~  255 (293)
                      +..+..+++|+.|++++|.+.++|.          ..+..+++|++|++++|.+..
T Consensus       194 ~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          194 PHAFRDLGRLMTLYLFANNLSALPT----------EALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCH----------HHHTTCTTCCEEECCSSCEEC
T ss_pred             HhHccCcccccEeeCCCCcCCcCCH----------HHcccCcccCEEeccCCCccC
Confidence            5666777777777777777776642          024566777777777776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=1.7e-23  Score=185.78  Aligned_cols=233  Identities=20%  Similarity=0.192  Sum_probs=185.4

Q ss_pred             cEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCCC-cCceEEeecCCcCCcccCCC---CCCccEEeccccccc
Q 039599           32 RVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIE  104 (293)
Q Consensus        32 ~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~  104 (293)
                      ..++.++..+...+ .+  .+++|++++|.+....+..+.. ++|++|++++|.+....+..   +.+|++|++++|.+.
T Consensus        57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  136 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT  136 (452)
T ss_dssp             CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence            45555555444222 22  3888999998877766776654 49999999999855444443   458999999999999


Q ss_pred             ccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCCh-hhhccccCCceecCCCcccccCCCcc
Q 039599          105 EVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPE-SLEKMEHLNQINLGRTTITEQRPSSF  182 (293)
Q Consensus       105 ~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~  182 (293)
                      .+++ .+..+++|++|++++|.+....+..+..+++|++|++++|...+.++. .+..+++|++|++++|.+++ +| .+
T Consensus       137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~  214 (452)
T 3zyi_A          137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NL  214 (452)
T ss_dssp             BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CC
T ss_pred             ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cc
Confidence            8887 478899999999999987765556788999999999999766666654 58899999999999999964 34 57


Q ss_pred             cccccCceecCCCC---ccccccccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCcCCc
Q 039599          183 ENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ  258 (293)
Q Consensus       183 ~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~  258 (293)
                      ..+++|+.|++++|   +..+..+..+++|+.|++++|.+..+ |.           .+.++++|++|++++|.++.+|.
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------~~~~l~~L~~L~L~~N~l~~~~~  283 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN-----------AFDGLASLVELNLAHNNLSSLPH  283 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT-----------TTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH-----------HhcCCCCCCEEECCCCcCCccCh
Confidence            78899999999999   34477888999999999999998887 33           36688999999999999998664


Q ss_pred             -ccCCCCCCcEEeccCCcCC
Q 039599          259 -EIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       259 -~~~~~~~L~~L~l~~n~l~  277 (293)
                       .+..+++|+.|++++|++.
T Consensus       284 ~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          284 DLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TSSTTCTTCCEEECCSSCEE
T ss_pred             HHhccccCCCEEEccCCCcC
Confidence             5678999999999999876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=9.3e-25  Score=195.33  Aligned_cols=222  Identities=13%  Similarity=0.157  Sum_probs=138.9

Q ss_pred             EEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccC-CCCCCccEEecccccccccCccccCCCCCCEEEeccCccc
Q 039599           50 QLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFP-HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRL  127 (293)
Q Consensus        50 ~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  127 (293)
                      ++|++++|.+.+..|..+. +++|++|++++|.+.+..| ..+.+|++|++++|.++.++..    ++|++|++++|.+.
T Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~  112 (487)
T 3oja_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNIS  112 (487)
T ss_dssp             CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCC
T ss_pred             cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCC
Confidence            3333333433333333333 3366677776666433332 2234666777777766655432    66777777776655


Q ss_pred             cccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCccc-ccccCceecCCCC--cccccccc
Q 039599          128 KRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFE-NVKGLETLGFSEL--DNLSDNIG  204 (293)
Q Consensus       128 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~--~~l~~~~~  204 (293)
                      ...+.   .+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|  ..++ ...
T Consensus       113 ~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-~~~  188 (487)
T 3oja_A          113 RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQV  188 (487)
T ss_dssp             CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCC
T ss_pred             CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc-ccc
Confidence            53332   346677777777766665566666777777777777777665555554 5677777777777  3333 233


Q ss_pred             CccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCC--CCchh
Q 039599          205 NFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLE--GLPAS  282 (293)
Q Consensus       205 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~--~~p~~  282 (293)
                      .+++|+.|++++|.++++|.           .+..+++|+.|++++|.++++|..+..+++|+.|++++|++.  .+|.+
T Consensus       189 ~l~~L~~L~Ls~N~l~~~~~-----------~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAFMGP-----------EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             CCTTCCEEECCSSCCCEECG-----------GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             cCCCCCEEECCCCCCCCCCH-----------hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            57777777787777777643           245667788888888888777777777788888888888877  36666


Q ss_pred             HhhcccCC
Q 039599          283 IKQISRLE  290 (293)
Q Consensus       283 l~~l~~L~  290 (293)
                      +..+++|+
T Consensus       258 ~~~l~~L~  265 (487)
T 3oja_A          258 FSKNQRVQ  265 (487)
T ss_dssp             HTTCHHHH
T ss_pred             HHhCCCCc
Confidence            66655543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=1.3e-23  Score=185.92  Aligned_cols=230  Identities=17%  Similarity=0.190  Sum_probs=166.4

Q ss_pred             eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEeccC
Q 039599           49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRC  124 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~  124 (293)
                      .+.+++.+.. +..+|..+. .+++.|++++|.+....+..   +.+|++|++++|.+..++. .|.++++|++|++++|
T Consensus        45 ~~~v~c~~~~-l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKN-LREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCC-CSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCC-cCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            3456665544 445665543 48888999988844433333   4578888999998887764 6788899999999988


Q ss_pred             ccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCc-ccccCCCcccccccCceecCCCC--ccccc
Q 039599          125 TRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT-ITEQRPSSFENVKGLETLGFSEL--DNLSD  201 (293)
Q Consensus       125 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~--~~l~~  201 (293)
                      .+....+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..|..+++|+.|++++|  ..++ 
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence            7766555567888899999999887766556678888899999998854 43333346778889999999888  4555 


Q ss_pred             cccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCC
Q 039599          202 NIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGL  279 (293)
Q Consensus       202 ~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~  279 (293)
                      .+..+++|++|++++|.+.++ |.           .+.++++|++|++++|.+++ .+.++..+++|+.|++++|+++++
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAIRPG-----------SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEECTT-----------TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             ccCCCcccCEEECCCCccCccChh-----------hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            467888899999999988877 43           25567777778888777777 445677777788888888877775


Q ss_pred             ch-hHhhcccCCCC
Q 039599          280 PA-SIKQISRLESL  292 (293)
Q Consensus       280 p~-~l~~l~~L~~l  292 (293)
                      |. .+..+++|+.|
T Consensus       271 ~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          271 PHDLFTPLHHLERI  284 (440)
T ss_dssp             CTTTTSSCTTCCEE
T ss_pred             ChhHhccccCCCEE
Confidence            53 34556666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=1.4e-23  Score=186.28  Aligned_cols=230  Identities=18%  Similarity=0.177  Sum_probs=162.7

Q ss_pred             EEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEecccccccccC-ccccCCCCCCEEEeccCc
Q 039599           50 QLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCT  125 (293)
Q Consensus        50 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~  125 (293)
                      ..+++.+.. +..+|..+. .+++.|++++|.+....|..   +.+|++|++++|.+..++ ..|.++++|++|++++|.
T Consensus        57 ~~v~c~~~~-l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           57 SKVVCTRRG-LSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             CEEECCSSC-CSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEECCCC-cCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            445555543 334554432 47788888887744433433   346777788888877665 367778888888888877


Q ss_pred             cccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCC-CcccccccCceecCCCC--cccccc
Q 039599          126 RLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRP-SSFENVKGLETLGFSEL--DNLSDN  202 (293)
Q Consensus       126 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~--~~l~~~  202 (293)
                      +....+..+..+++|++|++++|.+....+..+..+++|++|++++|...+.++ ..|..+++|+.|++++|  ..++ .
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~  213 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N  213 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-C
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-c
Confidence            665445556777888888888876665555567778888888887743323333 35677788888888877  3443 4


Q ss_pred             ccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCCc
Q 039599          203 IGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLP  280 (293)
Q Consensus       203 ~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p  280 (293)
                      +..+++|++|++++|.+.++ |.           .+.++++|+.|++++|.++. .+..+..+++|+.|++++|+++++|
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPG-----------SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGG-----------GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccccccEEECcCCcCcccCcc-----------cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence            66777888888888877766 33           36788999999999999998 5677899999999999999999966


Q ss_pred             h-hHhhcccCCCCC
Q 039599          281 A-SIKQISRLESLD  293 (293)
Q Consensus       281 ~-~l~~l~~L~~ld  293 (293)
                      . .+..+++|+.|+
T Consensus       283 ~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          283 HDLFTPLRYLVELH  296 (452)
T ss_dssp             TTSSTTCTTCCEEE
T ss_pred             hHHhccccCCCEEE
Confidence            4 456678887653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=2.3e-23  Score=184.27  Aligned_cols=234  Identities=18%  Similarity=0.150  Sum_probs=185.1

Q ss_pred             cEEEEeccceeee-ccc--ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCC---CCCCccEEeccccccc
Q 039599           32 RVLKFYIPEISVH-MSI--EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPH---ISGNITRLYLDETAIE  104 (293)
Q Consensus        32 ~~L~l~~~~~~~~-~~~--~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~~  104 (293)
                      ..++..+..+... ..+  .++.|++++|.+....+..+. +.+|++|++++|.+....+.   .+.+|++|++++|.+.
T Consensus        46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence            4455555444422 222  288888888887666666665 44999999999984433222   3568999999999999


Q ss_pred             ccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCCh-hhhccccCCceecCCCcccccCCCcc
Q 039599          105 EVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPE-SLEKMEHLNQINLGRTTITEQRPSSF  182 (293)
Q Consensus       105 ~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~  182 (293)
                      .++. .+..+++|++|++++|.+....+..+..+++|++|++++|...+.++. .+..+++|++|++++|.++ .+| .+
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~  203 (440)
T 3zyj_A          126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NL  203 (440)
T ss_dssp             SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CC
T ss_pred             eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-cc
Confidence            8887 688999999999999987765566788999999999999766666654 6889999999999999996 444 47


Q ss_pred             cccccCceecCCCC---ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc-
Q 039599          183 ENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ-  258 (293)
Q Consensus       183 ~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-  258 (293)
                      ..+++|+.|++++|   ...+..+..+++|++|++++|.+..++.-          .+..+++|++|++++|.++.+|. 
T Consensus       204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~  273 (440)
T 3zyj_A          204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN----------AFDNLQSLVEINLAHNNLTLLPHD  273 (440)
T ss_dssp             TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT----------SSTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh----------hhcCCCCCCEEECCCCCCCccChh
Confidence            78899999999999   33467888999999999999999887321          36688999999999999999664 


Q ss_pred             ccCCCCCCcEEeccCCcCC
Q 039599          259 EIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       259 ~~~~~~~L~~L~l~~n~l~  277 (293)
                      .+..+++|+.|++++|++.
T Consensus       274 ~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          274 LFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTSSCTTCCEEECCSSCEE
T ss_pred             HhccccCCCEEEcCCCCcc
Confidence            5688999999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=8.8e-23  Score=186.63  Aligned_cols=216  Identities=15%  Similarity=0.079  Sum_probs=125.8

Q ss_pred             ecCcccceeechhhccCCccccEEEEeccceeeecc-c-ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCC
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMS-I-EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPH   88 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~-~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~   88 (293)
                      ++++|....++.    .+++|++|++++|.+...+. + .|++|++++|.+.. +|.  ...+|+.|++++|. ++.+|.
T Consensus        67 ~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~  138 (622)
T 3g06_A           67 VIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPV  138 (622)
T ss_dssp             EECSCCCSCCCC----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC-CCC--CCTTCCEEECCSSC-CSCCCC
T ss_pred             EecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC-CCC--CCCCcCEEECCCCC-CCcCCC
Confidence            778887666664    46788888888887763322 2 28888888876443 344  33477777777776 555666


Q ss_pred             CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhh----------
Q 039599           89 ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESL----------  158 (293)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----------  158 (293)
                      .+.+|++|++++|.+..+|..   +++|+.|++++|.+.. +|   ..+++|+.|++++|.+.+ +|..+          
T Consensus       139 ~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~  210 (622)
T 3g06_A          139 LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYN  210 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred             CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcC
Confidence            667777777777777666542   2455555555554433 23   234455555555554332 22211          


Q ss_pred             -------hccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCC
Q 039599          159 -------EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGL  229 (293)
Q Consensus       159 -------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l  229 (293)
                             ..+++|++|++++|.+++ +|   ..+++|+.|++++|  ..+|.   .+++|+.|++++|.+..+|.     
T Consensus       211 N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~-----  278 (622)
T 3g06_A          211 NRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPE-----  278 (622)
T ss_dssp             SCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCG-----
T ss_pred             CcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCH-----
Confidence                   012445555555555532 22   22345555555555  33333   34455555555555554443     


Q ss_pred             ccCcccccCCccccceeecCCccCCc-CCccc
Q 039599          230 VPLSASLLSGLSLLYWLHLNNCALTS-IPQEI  260 (293)
Q Consensus       230 ~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~  260 (293)
                            .+..+++|+.|++++|.+++ .|..+
T Consensus       279 ------~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          279 ------SLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             ------GGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             ------HHhhccccCEEEecCCCCCCcCHHHH
Confidence                  36688999999999999987 55444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=7.5e-26  Score=191.33  Aligned_cols=229  Identities=14%  Similarity=0.151  Sum_probs=181.7

Q ss_pred             eEEEeccCCcccccCCCCCCCcCceEEeecCCcCC-cccCC----------CCCCccEEeccccccc-ccCccc--cCCC
Q 039599           49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINL-TDFPH----------ISGNITRLYLDETAIE-EVPSSI--KCLT  114 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~----------~~~~L~~L~l~~~~~~-~l~~~~--~~l~  114 (293)
                      ++++++++|.+  .+|..+.. .|+.|++++|.+. ..+|.          .+.+|++|++++|.+. .+|..+  ..++
T Consensus        45 L~~l~l~~n~l--~~p~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  121 (312)
T 1wwl_A           45 LEYLLKRVDTE--ADLGQFTD-IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP  121 (312)
T ss_dssp             CTTHHHHCCTT--CCCHHHHH-HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred             ceeEeeccccc--ccHHHHHH-HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence            77788888876  55654322 3778888887752 23443          3678999999999997 677765  8899


Q ss_pred             CCCEEEeccCccccccccccccc-----cccceecccccccCCCCChhhhccccCCceecCCCccccc--CCCcc--ccc
Q 039599          115 NLKLLRINRCTRLKRVSTSICKL-----KSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQ--RPSSF--ENV  185 (293)
Q Consensus       115 ~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~--~~~  185 (293)
                      +|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+..+  ..+
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            999999999988776 7777776     8999999999988887778999999999999999987654  23333  788


Q ss_pred             ccCceecCCCC--c---ccc-ccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcc
Q 039599          186 KGLETLGFSEL--D---NLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE  259 (293)
Q Consensus       186 ~~L~~L~l~~~--~---~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~  259 (293)
                      ++|++|++++|  .   .++ ..+..+++|++|++++|.+.+.+...         .+..+++|++|++++|.|+.+|..
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------~~~~l~~L~~L~Ls~N~l~~ip~~  271 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP---------SCDWPSQLNSLNLSFTGLKQVPKG  271 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS---------CCCCCTTCCEEECTTSCCSSCCSS
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh---------hhhhcCCCCEEECCCCccChhhhh
Confidence            99999999999  3   222 23457899999999999998863100         144678999999999999999987


Q ss_pred             cCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599          260 IGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       260 ~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      +.  ++|+.|++++|+++++|. +..+++|+.||
T Consensus       272 ~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~  302 (312)
T 1wwl_A          272 LP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLS  302 (312)
T ss_dssp             CC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEE
T ss_pred             cc--CCceEEECCCCCCCCChh-HhhCCCCCEEe
Confidence            76  899999999999999987 88888887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=1.8e-24  Score=183.34  Aligned_cols=223  Identities=15%  Similarity=0.106  Sum_probs=175.4

Q ss_pred             EEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccC---CCCCCccEEecccccccccCccccCCCCCCEEEeccCc
Q 039599           50 QLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFP---HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCT  125 (293)
Q Consensus        50 ~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  125 (293)
                      +..++..+.+.......+. .++|++|++++|.+....|   ..+.+|++|++++|.+...++ +..+++|++|++++|.
T Consensus        13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE
T ss_pred             eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc
Confidence            3444555443322222222 3489999999998554333   346689999999999987665 8899999999999997


Q ss_pred             cccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cc-cccc
Q 039599          126 RLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DN-LSDN  202 (293)
Q Consensus       126 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~-l~~~  202 (293)
                      +.+ +    ...++|++|++++|.+.+..+.   .+++|++|++++|.+++..+..+..+++|+.|++++|  .. .+..
T Consensus        92 l~~-l----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           92 VQE-L----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             EEE-E----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             ccc-c----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            654 2    2448999999999977654433   3678999999999998777778889999999999999  33 3344


Q ss_pred             c-cCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCch
Q 039599          203 I-GNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPA  281 (293)
Q Consensus       203 ~-~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~  281 (293)
                      + ..+++|++|++++|.+.+++.            ...+++|++|++++|.++++|..+..+++|+.|++++|+++++|.
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~~~------------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~  231 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDVKG------------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK  231 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEEC------------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred             HhhccCcCCEEECCCCcCccccc------------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence            4 478999999999999988754            235789999999999999988889999999999999999999998


Q ss_pred             hHhhcccCCCCC
Q 039599          282 SIKQISRLESLD  293 (293)
Q Consensus       282 ~l~~l~~L~~ld  293 (293)
                      .+..+++|+.||
T Consensus       232 ~~~~l~~L~~L~  243 (317)
T 3o53_A          232 ALRFSQNLEHFD  243 (317)
T ss_dssp             TCCCCTTCCEEE
T ss_pred             HhhcCCCCCEEE
Confidence            888888888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2e-22  Score=166.88  Aligned_cols=197  Identities=21%  Similarity=0.278  Sum_probs=159.7

Q ss_pred             CceEEeecCCcCCcccCCCCC-CccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599           71 SPVTIDFTSCINLTDFPHISG-NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC  148 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  148 (293)
                      +.+.++++++. ++.+|..++ ++++|++++|.+..+++ .+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        17 ~~~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           17 NKNSVDCSSKK-LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCEEEccCCC-CCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            56788888877 566776544 78999999999888876 6888999999999998776544455678899999999998


Q ss_pred             ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCCccCCCCc
Q 039599          149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQLPSL  225 (293)
Q Consensus       149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l  225 (293)
                      .+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|  ..++. .+..+++|++|++++|.+..++.-
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  175 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG  175 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence            777666667888999999999999997777777888999999999988  44444 467889999999999999888431


Q ss_pred             CCCCccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC
Q 039599          226 SSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       226 ~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~  278 (293)
                                .+..+++|++|++++|.++.+|. .+..+++|+.|++++|++..
T Consensus       176 ----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          176 ----------AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             ----------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ----------HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence                      25678899999999999998665 47789999999999998864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2.9e-23  Score=172.37  Aligned_cols=206  Identities=18%  Similarity=0.162  Sum_probs=166.2

Q ss_pred             ccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEeccCcccccccccccc
Q 039599           61 RSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICK  136 (293)
Q Consensus        61 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~  136 (293)
                      ..+|..+. .++++|++++|.+....+..   +.+|++|++++|.+..+++ .+..+++|++|++++|.+....+..+..
T Consensus        20 ~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (276)
T 2z62_A           20 YKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (276)
T ss_dssp             SSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             cccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence            34565442 48999999999854433323   4589999999999988776 7889999999999999887766778889


Q ss_pred             ccccceecccccccCCCCChhhhccccCCceecCCCccccc-CCCcccccccCceecCCCC--ccc-cccccCccccc--
Q 039599          137 LKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQ-RPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFE--  210 (293)
Q Consensus       137 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~--  210 (293)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|  ..+ +..+..++.++  
T Consensus        99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l  178 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL  178 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred             CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence            99999999999988776666789999999999999999763 5788999999999999998  333 34555666666  


Q ss_pred             --eecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcc-cCCCCCCcEEeccCCcCCC
Q 039599          211 --YMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE-IGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       211 --~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~l~~  278 (293)
                        .+++++|.+.+++..           .....+|++|++++|.++++|.. +..+++|+.|++++|+++.
T Consensus       179 ~l~L~ls~n~l~~~~~~-----------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          179 NLSLDLSLNPMNFIQPG-----------AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CEEEECCSSCCCEECTT-----------SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             ceeeecCCCcccccCcc-----------ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence              889999999887441           11334799999999999997654 6889999999999999986

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=9.9e-24  Score=188.66  Aligned_cols=203  Identities=16%  Similarity=0.098  Sum_probs=170.7

Q ss_pred             cCceEEeecCCcCCcccCC---CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccc
Q 039599           70 VSPVTIDFTSCINLTDFPH---ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAY  146 (293)
Q Consensus        70 ~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  146 (293)
                      ++|+.|++++|.+....|.   .+.+|++|++++|.+...++ +..+++|++|++++|.+.+ ++    ..++|++|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEECc
Confidence            4899999999995554443   35689999999999986665 8899999999999997654 22    33899999999


Q ss_pred             ccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---cccccccc-CccccceecccCCCccCC
Q 039599          147 GCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIG-NFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       147 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~-~l~~L~~L~l~~~~~~~~  222 (293)
                      +|.+.+..+.   .+++|++|++++|.+++..+..+..+++|+.|++++|   +..+..+. .+++|++|++++|.++++
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            9987765443   4678999999999998887888999999999999999   33555555 789999999999999888


Q ss_pred             CCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599          223 PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       223 ~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      |.            ...+++|+.|++++|.++++|..+..+++|+.|++++|.++++|..+..+++|+.+|
T Consensus       185 ~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          185 KG------------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD  243 (487)
T ss_dssp             EC------------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE
T ss_pred             cc------------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEE
Confidence            54            336789999999999999988889999999999999999999998888888887653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=6.4e-22  Score=165.39  Aligned_cols=195  Identities=20%  Similarity=0.194  Sum_probs=161.2

Q ss_pred             cCceEEeecCCcCCcccCCCC-CCccEEecccccccccC-ccccCCCCCCEEEeccCccccccccccccccccceecccc
Q 039599           70 VSPVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYG  147 (293)
Q Consensus        70 ~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  147 (293)
                      .++++++++++. ++.+|..+ .+++.|++++|.+..++ ..+..+++|++|++++|.+... +.. ..+++|++|++++
T Consensus        10 ~~l~~l~~~~~~-l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~   86 (290)
T 1p9a_G           10 ASHLEVNCDKRN-LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSH   86 (290)
T ss_dssp             TTCCEEECTTSC-CSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCS
T ss_pred             CCccEEECCCCC-CCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCC
Confidence            478888888887 66777654 47999999999998775 4788899999999999886653 332 6888999999999


Q ss_pred             cccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccCCCC
Q 039599          148 CLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQLPS  224 (293)
Q Consensus       148 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~~~~  224 (293)
                      |.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|  ..++ ..+..+++|+.|++++|.+..+|.
T Consensus        87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  165 (290)
T 1p9a_G           87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (290)
T ss_dssp             SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             CcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence            8665 67778888999999999999997766677889999999999998  4444 346789999999999999998854


Q ss_pred             cCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC
Q 039599          225 LSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       225 l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~  278 (293)
                      -          .+..+++|++|++++|.++.+|..+...++|+.+++++|++..
T Consensus       166 ~----------~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          166 G----------LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             T----------TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             H----------HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            1          2567889999999999999999988889999999999998874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=7e-22  Score=164.04  Aligned_cols=198  Identities=15%  Similarity=0.153  Sum_probs=155.4

Q ss_pred             ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEec
Q 039599           48 EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRIN  122 (293)
Q Consensus        48 ~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~  122 (293)
                      .+++|++++|.+....+..+. +++|++|++++|.+....+..   +.+|++|++++|.+..++. .+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            389999999987665554554 459999999999844333323   4578999999999987764 68889999999999


Q ss_pred             cCccccccccccccccccceecccccccCC-CCChhhhccccCCceecCCCcccccCCCcccccccCc----eecCCCC-
Q 039599          123 RCTRLKRVSTSICKLKSLIALSAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLE----TLGFSEL-  196 (293)
Q Consensus       123 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~~-  196 (293)
                      +|.+....+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+..+..+++|+    .|++++| 
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            988776555568889999999999997765 3688899999999999999999776666777777777    7888888 


Q ss_pred             -ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc
Q 039599          197 -DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS  255 (293)
Q Consensus       197 -~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~  255 (293)
                       ..++.......+|++|++++|.++++|..          .+..+++|++|++++|.++.
T Consensus       189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          189 MNFIQPGAFKEIRLKELALDTNQLKSVPDG----------IFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCEECTTSSCSCCEEEEECCSSCCSCCCTT----------TTTTCCSCCEEECCSSCBCC
T ss_pred             ccccCccccCCCcccEEECCCCceeecCHh----------HhcccccccEEEccCCcccc
Confidence             55555555666899999999999888541          25678889999999998774

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=9.4e-22  Score=162.78  Aligned_cols=191  Identities=18%  Similarity=0.259  Sum_probs=161.0

Q ss_pred             CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599           91 GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG  170 (293)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  170 (293)
                      ...+.+++++++++.+|..+.  +++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            367899999999999998664  689999999998776666678899999999999997775555667899999999999


Q ss_pred             CCcccccCCCcccccccCceecCCCC--ccc-cccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceee
Q 039599          171 RTTITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLH  247 (293)
Q Consensus       171 ~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~  247 (293)
                      +|.+.+..+..|..+++|+.|++++|  ..+ +..+..+++|++|++++|.+.++|.-          .++.+++|++|+
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~  163 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG----------VFDKLTSLKELR  163 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------TTTTCTTCCEEE
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh----------HccCCcccceeE
Confidence            99997766667889999999999998  333 44578999999999999999988541          256889999999


Q ss_pred             cCCccCCcCCc-ccCCCCCCcEEeccCCcCCCCch-hHhhcccCCCCC
Q 039599          248 LNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD  293 (293)
Q Consensus       248 l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~~p~-~l~~l~~L~~ld  293 (293)
                      +++|.++.++. .+..+++|+.|++++|+++++|+ .+..+++|+.|+
T Consensus       164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  211 (270)
T 2o6q_A          164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ  211 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence            99999999665 57889999999999999999765 477788887653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.88  E-value=5.5e-25  Score=195.68  Aligned_cols=244  Identities=18%  Similarity=0.183  Sum_probs=131.2

Q ss_pred             eEEEeccCCcccc----cCCCCCC-CcCceEEeecCCcCCccc--------CCCCCCccEEecccccccc-----cCccc
Q 039599           49 EQLLDSKGCKILR----SFPSNLH-FVSPVTIDFTSCINLTDF--------PHISGNITRLYLDETAIEE-----VPSSI  110 (293)
Q Consensus        49 l~~L~l~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~-----l~~~~  110 (293)
                      +++|++++|.+..    .++..+. +++|++|++++|.+....        .....+|++|++++|.++.     ++..+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  166 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  166 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence            5555555555432    2232222 336666666666532211        1122356666666666542     23445


Q ss_pred             cCCCCCCEEEeccCccccccccccc-----cccccceecccccccCCC----CChhhhccccCCceecCCCcccccCCC-
Q 039599          111 KCLTNLKLLRINRCTRLKRVSTSIC-----KLKSLIALSAYGCLNLER----FPESLEKMEHLNQINLGRTTITEQRPS-  180 (293)
Q Consensus       111 ~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~-  180 (293)
                      ..+++|++|++++|.+....+..+.     ..++|++|++++|.+...    ++..+..+++|++|++++|.+++.... 
T Consensus       167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  246 (461)
T 1z7x_W          167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE  246 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence            5567777777777665443332222     244777777777765542    455566677777777777776443211 


Q ss_pred             ----cccccccCceecCCCC--cc-----ccccccCccccceecccCCCccCC-CC-cC-------CCCccCcccc----
Q 039599          181 ----SFENVKGLETLGFSEL--DN-----LSDNIGNFKSFEYMGAHGSAISQL-PS-LS-------SGLVPLSASL----  236 (293)
Q Consensus       181 ----~~~~~~~L~~L~l~~~--~~-----l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~-------~~l~~l~~~~----  236 (293)
                          .+..+++|+.|++++|  ..     ++..+..+++|++|++++|.+.+. +. +.       +.++.|+++.    
T Consensus       247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence                1223567777777776  11     455555667777777777766432 10 11       2444444431    


Q ss_pred             ----------cCCccccceeecCCccCCc-CCccc----CC-CCCCcEEeccCCcCC-----CCchhHhhcccCCCC
Q 039599          237 ----------LSGLSLLYWLHLNNCALTS-IPQEI----GY-LSSLEWLHLRGNNLE-----GLPASIKQISRLESL  292 (293)
Q Consensus       237 ----------~~~~~~L~~L~l~~n~i~~-l~~~~----~~-~~~L~~L~l~~n~l~-----~~p~~l~~l~~L~~l  292 (293)
                                +..+++|++|++++|.+++ .+..+    .. .++|+.|++++|+++     .+|..+..+++|+.|
T Consensus       327 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  403 (461)
T 1z7x_W          327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  403 (461)
T ss_dssp             GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence                      2233566666666666654 12222    21 556666666666666     355556666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=5.1e-22  Score=164.51  Aligned_cols=176  Identities=17%  Similarity=0.213  Sum_probs=77.3

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      +|++|++++|.+..++ .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        64 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  142 (272)
T 3rfs_A           64 NVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH  142 (272)
T ss_dssp             TCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence            4444444444444332 344444445555544444333333344444455555544444433333344444455555555


Q ss_pred             CcccccCCCcccccccCceecCCCC--ccc-cccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeec
Q 039599          172 TTITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL  248 (293)
Q Consensus       172 n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l  248 (293)
                      |.+++..+..+..+++|+.|++++|  ..+ +..+..+++|++|++++|.+.+++.-          .++.+++|++|++
T Consensus       143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~l  212 (272)
T 3rfs_A          143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG----------VFDRLTSLQYIWL  212 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT----------TTTTCTTCCEEEC
T ss_pred             CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH----------HHhCCcCCCEEEc
Confidence            5444333333444444444444444  222 12234444555555555555444220          1234445555555


Q ss_pred             CCccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHh
Q 039599          249 NNCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIK  284 (293)
Q Consensus       249 ~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~  284 (293)
                      ++|.+.      +.+++++.++++.|.+++ +|.+++
T Consensus       213 ~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          213 HDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             cCCCcc------ccCcHHHHHHHHHHhCCCcccCccc
Confidence            555332      223444555555555544 444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=2.4e-21  Score=163.34  Aligned_cols=190  Identities=21%  Similarity=0.295  Sum_probs=123.5

Q ss_pred             cCceEEeecCCcCCcccCC--CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccc
Q 039599           70 VSPVTIDFTSCINLTDFPH--ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYG  147 (293)
Q Consensus        70 ~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  147 (293)
                      .+|+.|++++|. ...++.  .+.+|++|++++|.+..+++ +..+++|++|++++|.+.. .+ .+..+++|++|++++
T Consensus        41 ~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           41 DGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTT
T ss_pred             CCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCC
Confidence            366666666665 333432  23466777777777766665 6677777777777766443 22 466677777777777


Q ss_pred             cccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCc
Q 039599          148 CLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSL  225 (293)
Q Consensus       148 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l  225 (293)
                      |.+.+ ++ .+..+++|++|++++|.+++..+  +..+++|+.|++++|  ..++. +..+++|++|++++|.+.+++. 
T Consensus       117 n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-  190 (308)
T 1h6u_A          117 TQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-  190 (308)
T ss_dssp             SCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence            75543 32 26677777777777777754322  666777777777777  33333 6677777777777777766643 


Q ss_pred             CCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCch
Q 039599          226 SSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPA  281 (293)
Q Consensus       226 ~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~  281 (293)
                                 +..+++|++|++++|.+++++. +..+++|+.|++++|++++.|.
T Consensus       191 -----------l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          191 -----------LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             -----------GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred             -----------hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence                       3466777777777777777653 6677777777777777766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.87  E-value=5.5e-25  Score=195.65  Aligned_cols=264  Identities=14%  Similarity=0.091  Sum_probs=158.3

Q ss_pred             eEEEEeecCcccceeec----hhhccCCccccEEEEeccceeeec-----------ccceEEEeccCCcccccC----CC
Q 039599            5 IESIFLNLSTIKGINLN----LRAFSNMSNLRVLKFYIPEISVHM-----------SIEEQLLDSKGCKILRSF----PS   65 (293)
Q Consensus         5 ~~~i~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~-----------~~~l~~L~l~~~~~~~~~----~~   65 (293)
                      ++.+  ++++|.....+    +..+..+++|++|++++|.+....           ...|++|++++|.+....    +.
T Consensus        87 L~~L--~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           87 IQKL--SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCEE--ECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             eeEE--EccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            4444  66666544322    345666666777777666654210           012666777666554322    21


Q ss_pred             CC-CCcCceEEeecCCcCCcccC--------CCCCCccEEecccccccc-----cCccccCCCCCCEEEeccCccccccc
Q 039599           66 NL-HFVSPVTIDFTSCINLTDFP--------HISGNITRLYLDETAIEE-----VPSSIKCLTNLKLLRINRCTRLKRVS  131 (293)
Q Consensus        66 ~~-~~~~L~~L~l~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~  131 (293)
                      .+ .+++|++|++++|.+....+        ....+|++|++++|.++.     ++..+..+++|++|++++|.+.....
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            21 13467777777776332211        113367777777777654     35556667777777777776543221


Q ss_pred             ----c-ccccccccceecccccccCCC----CChhhhccccCCceecCCCcccccCCCcccc-----cccCceecCCCC-
Q 039599          132 ----T-SICKLKSLIALSAYGCLNLER----FPESLEKMEHLNQINLGRTTITEQRPSSFEN-----VKGLETLGFSEL-  196 (293)
Q Consensus       132 ----~-~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~~-  196 (293)
                          . ....+++|++|++++|.+...    ++..+..+++|++|++++|.+.+..+..+..     .++|+.|++++| 
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence                1 112466777777777755432    4555666777777777777765433333322     257777777777 


Q ss_pred             -c-----cccccccCccccceecccCCCccCC-CC-cCCCCccCcccccC-CccccceeecCCccCCc-----CCcccCC
Q 039599          197 -D-----NLSDNIGNFKSFEYMGAHGSAISQL-PS-LSSGLVPLSASLLS-GLSLLYWLHLNNCALTS-----IPQEIGY  262 (293)
Q Consensus       197 -~-----~l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~~~-~~~~L~~L~l~~n~i~~-----l~~~~~~  262 (293)
                       .     .++..+..+++|++|++++|.+.+. +. +..        .+. ..++|++|++++|.+++     +|..+..
T Consensus       325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--------~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  396 (461)
T 1z7x_W          325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ--------GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA  396 (461)
T ss_dssp             CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH--------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH--------HHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence             1     2345556667777777777776554 11 110        011 25689999999999983     7777888


Q ss_pred             CCCCcEEeccCCcCCC
Q 039599          263 LSSLEWLHLRGNNLEG  278 (293)
Q Consensus       263 ~~~L~~L~l~~n~l~~  278 (293)
                      +++|+.|++++|++++
T Consensus       397 ~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          397 NHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CCCCCEEECCSSSCCH
T ss_pred             CCCccEEECCCCCCCH
Confidence            9999999999999985

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=2.8e-21  Score=157.03  Aligned_cols=188  Identities=18%  Similarity=0.207  Sum_probs=91.8

Q ss_pred             CceEEeecCCcCCcccCC-C---CCCccEEeccccc-ccccCc-cccCCCCCCEEEecc-Ccccccccccccccccccee
Q 039599           71 SPVTIDFTSCINLTDFPH-I---SGNITRLYLDETA-IEEVPS-SIKCLTNLKLLRINR-CTRLKRVSTSICKLKSLIAL  143 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~-~---~~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L  143 (293)
                      ++++|++++|. ++.+|. .   +.+|++|++++|. ++.+++ .|.++++|++|++++ |.+....+..+..+++|++|
T Consensus        32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            56666666665 333332 2   2355566666664 555554 455566666666665 44443333445555666666


Q ss_pred             cccccccCCCCChhhhccccCC---ceecCCC-cccccCCCcccccccCc-eecCCCC--ccccccccCccccceecccC
Q 039599          144 SAYGCLNLERFPESLEKMEHLN---QINLGRT-TITEQRPSSFENVKGLE-TLGFSEL--DNLSDNIGNFKSFEYMGAHG  216 (293)
Q Consensus       144 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~~--~~l~~~~~~l~~L~~L~l~~  216 (293)
                      ++++|.+.+ +|. +..+++|+   +|++++| .+++..+..|..+++|+ .|++++|  ..++......++|++|++++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence            666654443 333 55555555   6666665 55443333455555555 5555554  33333222224455555555


Q ss_pred             CC-ccCCCCcCCCCccCcccccCCc-cccceeecCCccCCcCCcccCCCCCCcEEeccC
Q 039599          217 SA-ISQLPSLSSGLVPLSASLLSGL-SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRG  273 (293)
Q Consensus       217 ~~-~~~~~~l~~~l~~l~~~~~~~~-~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~  273 (293)
                      |+ +..+|.-          .+.++ ++|++|++++|.++.+|..  .+++|+.|++++
T Consensus       189 n~~l~~i~~~----------~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~  235 (239)
T 2xwt_C          189 NKYLTVIDKD----------AFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN  235 (239)
T ss_dssp             CTTCCEECTT----------TTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred             CCCcccCCHH----------HhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence            42 4443210          13334 4445555555544444432  344444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=8e-22  Score=160.22  Aligned_cols=194  Identities=16%  Similarity=0.225  Sum_probs=158.2

Q ss_pred             CcccCCCCCCccEEecccccccccCc-cccCCCCCCEEEeccCc-cccccccccccccccceecccc-cccCCCCChhhh
Q 039599           83 LTDFPHISGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCT-RLKRVSTSICKLKSLIALSAYG-CLNLERFPESLE  159 (293)
Q Consensus        83 ~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~  159 (293)
                      .+.+|....++++|++++|++..+++ .+.++++|++|++++|. +....+..+..+++|++|++++ |.+.+..+..+.
T Consensus        23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~  102 (239)
T 2xwt_C           23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK  102 (239)
T ss_dssp             CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred             ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence            77788744489999999999998887 78899999999999997 5554455788999999999998 766655557789


Q ss_pred             ccccCCceecCCCcccccCCCcccccccCc---eecCCCC---cccc-ccccCccccc-eecccCCCccCCCCcCCCCcc
Q 039599          160 KMEHLNQINLGRTTITEQRPSSFENVKGLE---TLGFSEL---DNLS-DNIGNFKSFE-YMGAHGSAISQLPSLSSGLVP  231 (293)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~---~L~l~~~---~~l~-~~~~~l~~L~-~L~l~~~~~~~~~~l~~~l~~  231 (293)
                      .+++|++|++++|.+++ +|. +..+++|+   .|++++|   ..++ ..+..+++|+ ++++++|.+..+|..      
T Consensus       103 ~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~------  174 (239)
T 2xwt_C          103 ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY------  174 (239)
T ss_dssp             CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT------
T ss_pred             CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh------
Confidence            99999999999999965 665 78888888   9999987   3444 3578899999 999999999877541      


Q ss_pred             CcccccCCccccceeecCCcc-CCcCC-cccCCC-CCCcEEeccCCcCCCCchhHhhcccCCC
Q 039599          232 LSASLLSGLSLLYWLHLNNCA-LTSIP-QEIGYL-SSLEWLHLRGNNLEGLPASIKQISRLES  291 (293)
Q Consensus       232 l~~~~~~~~~~L~~L~l~~n~-i~~l~-~~~~~~-~~L~~L~l~~n~l~~~p~~l~~l~~L~~  291 (293)
                          .+.. ++|++|++++|. ++.++ ..+..+ ++|+.|++++|+++++|..  .+++|+.
T Consensus       175 ----~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~  230 (239)
T 2xwt_C          175 ----AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKE  230 (239)
T ss_dssp             ----TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSE
T ss_pred             ----hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCce
Confidence                1334 789999999995 99865 567888 9999999999999998765  3444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=3.5e-21  Score=160.87  Aligned_cols=188  Identities=17%  Similarity=0.187  Sum_probs=161.2

Q ss_pred             CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599           90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL  169 (293)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  169 (293)
                      +.+++++++++++++.+|..+.  +++++|++++|.+....+..+..+++|++|++++|.+.+. +. ...+++|++|++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L   84 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDL   84 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEEC
T ss_pred             cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEEC
Confidence            4578999999999999998664  6899999999998877778899999999999999976643 33 278899999999


Q ss_pred             CCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccCCCCcCCCCccCcccccCCcccccee
Q 039599          170 GRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWL  246 (293)
Q Consensus       170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L  246 (293)
                      ++|.+. .+|..+..+++|+.|++++|  ..++ ..+..+++|++|++++|.+..+|.-          .+..+++|+.|
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L  153 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG----------LLTPTPKLEKL  153 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT----------TTTTCTTCCEE
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh----------hcccccCCCEE
Confidence            999995 67888889999999999999  4454 5688999999999999999988541          25678899999


Q ss_pred             ecCCccCCcCCc-ccCCCCCCcEEeccCCcCCCCchhHhhcccCCCC
Q 039599          247 HLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL  292 (293)
Q Consensus       247 ~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~l  292 (293)
                      ++++|.++.+|. .+..+++|+.|++++|+++.+|..+..+++|+.+
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l  200 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA  200 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeE
Confidence            999999999775 4578999999999999999999988887777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=4.6e-21  Score=161.62  Aligned_cols=182  Identities=19%  Similarity=0.294  Sum_probs=156.3

Q ss_pred             CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599           90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL  169 (293)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  169 (293)
                      +.+|++|+++++.+..++ .+..+++|++|++++|.+... +. +..+++|++|++++|.+.+ + +.+..+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL  114 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEEC
Confidence            558999999999999887 588999999999999987654 43 8899999999999997654 3 46889999999999


Q ss_pred             CCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceee
Q 039599          170 GRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLH  247 (293)
Q Consensus       170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~  247 (293)
                      ++|.+++. + .+..+++|+.|++++|  ..++. +..+++|++|++++|.+.+++.            +..+++|++|+
T Consensus       115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~------------l~~l~~L~~L~  179 (308)
T 1h6u_A          115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP------------LANLSKLTTLK  179 (308)
T ss_dssp             TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG------------GTTCTTCCEEE
T ss_pred             CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh------------hcCCCCCCEEE
Confidence            99999653 3 4889999999999999  44443 7889999999999999988754            56889999999


Q ss_pred             cCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599          248 LNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       248 l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      +++|.+++++. +..+++|+.|++++|+++++++ +..+++|+.|+
T Consensus       180 l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~  223 (308)
T 1h6u_A          180 ADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVT  223 (308)
T ss_dssp             CCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEE
T ss_pred             CCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEE
Confidence            99999999775 7889999999999999999885 78888888653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.3e-20  Score=154.17  Aligned_cols=176  Identities=18%  Similarity=0.257  Sum_probs=99.3

Q ss_pred             CceEEeecCCcCCcccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599           71 SPVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC  148 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  148 (293)
                      ..++++++++. ++.+|..+ .++++|++++|.+..+++ .+.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus        15 ~~~~l~~~~~~-l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           15 GKKEVDCQGKS-LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GGTEEECTTCC-CSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCeEEecCCCC-ccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            44566666665 55555443 356677777776665544 4566666777777666655544555566666666666666


Q ss_pred             ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCccccccccCccccceecccCCCccCCCCcCCC
Q 039599          149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSG  228 (293)
Q Consensus       149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~  228 (293)
                      .+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++                     ++|.+.++|.-   
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L---------------------s~N~l~~~~~~---  149 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL---------------------NTNQLQSIPAG---  149 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC---------------------CSSCCCCCCTT---
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC---------------------cCCcCCccCHH---
Confidence            555544455566666666666666665433333444555555554                     44554444220   


Q ss_pred             CccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC
Q 039599          229 LVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       229 l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~  278 (293)
                             .++.+++|++|++++|.++.++. .+..+++|+.|++++|+++.
T Consensus       150 -------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          150 -------AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             -------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             -------HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence                   13345555555665555555332 45555556666666655543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=7.1e-21  Score=160.61  Aligned_cols=193  Identities=15%  Similarity=0.124  Sum_probs=115.8

Q ss_pred             CceEEeecCCcCCcccCCC-----CCCccEEeccccccccc-C----ccccCCCCCCEEEeccCcccccccccccccccc
Q 039599           71 SPVTIDFTSCINLTDFPHI-----SGNITRLYLDETAIEEV-P----SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSL  140 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~l-~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  140 (293)
                      +|++|++++|.+.+..|..     ..+|++|++++|.+... +    ..+..+++|++|++++|.+....+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            4556666655544444433     23455556666555421 1    122345566666666665554444555566666


Q ss_pred             ceecccccccCCC--C--ChhhhccccCCceecCCCcccccCCC----cccccccCceecCCCC--cc-ccccccCc---
Q 039599          141 IALSAYGCLNLER--F--PESLEKMEHLNQINLGRTTITEQRPS----SFENVKGLETLGFSEL--DN-LSDNIGNF---  206 (293)
Q Consensus       141 ~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~~--~~-l~~~~~~l---  206 (293)
                      ++|++++|.+.+.  +  +..+..+++|++|++++|.++. ++.    .+..+++|++|++++|  .. .|..+..+   
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            6666666654321  1  1223455566666666666532 111    1344566666666666  22 24444444   


Q ss_pred             cccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC
Q 039599          207 KSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       207 ~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~  278 (293)
                      ++|++|++++|.++.+|..           +  .++|++|++++|.++++|. +..+++|+.|++++|++++
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~-----------~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKG-----------L--PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSC-----------C--CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCCEEECCCCCCCchhhh-----------h--cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence            6888888999998877651           1  2689999999999998876 6788999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=2.9e-20  Score=153.98  Aligned_cols=176  Identities=18%  Similarity=0.277  Sum_probs=149.2

Q ss_pred             CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599           90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL  169 (293)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  169 (293)
                      +.++++|+++++.+..++. +..+++|++|++++|.+.. . ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            4578888888888877654 7889999999999998765 3 36789999999999999888777777899999999999


Q ss_pred             CCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccCCCCcCCCCccCcccccCCcccccee
Q 039599          170 GRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWL  246 (293)
Q Consensus       170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L  246 (293)
                      ++|.+++..+..+..+++|++|++++|  ..++ ..+..+++|++|++++|.+.+++.-          .++.+++|++|
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L  186 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG----------VFDKLTQLKDL  186 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------TTTTCTTCCEE
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH----------HhcCCccCCEE
Confidence            999998777777889999999999999  4444 3467899999999999999988431          25688999999


Q ss_pred             ecCCccCCcCC-cccCCCCCCcEEeccCCcCCC
Q 039599          247 HLNNCALTSIP-QEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       247 ~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~  278 (293)
                      ++++|.+++++ ..+..+++|+.|++++|++.+
T Consensus       187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence            99999999955 457899999999999999986

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=6.4e-21  Score=160.91  Aligned_cols=212  Identities=13%  Similarity=0.099  Sum_probs=165.5

Q ss_pred             cCceEEeecCCcCCcc----cCC--CCCCccEEeccccccc-ccCccc--cCCCCCCEEEeccCccccccc----ccccc
Q 039599           70 VSPVTIDFTSCINLTD----FPH--ISGNITRLYLDETAIE-EVPSSI--KCLTNLKLLRINRCTRLKRVS----TSICK  136 (293)
Q Consensus        70 ~~L~~L~l~~~~~~~~----~~~--~~~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~  136 (293)
                      ..++.+.+.++.....    ++.  ...+|++|++++|.+. ..|..+  ..+++|++|++++|.+....+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4678888888874321    111  1246999999999986 555666  889999999999998876443    23457


Q ss_pred             ccccceecccccccCCCCChhhhccccCCceecCCCccccc--C--CCcccccccCceecCCCC--ccccc----cccCc
Q 039599          137 LKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQ--R--PSSFENVKGLETLGFSEL--DNLSD----NIGNF  206 (293)
Q Consensus       137 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~~--~~l~~----~~~~l  206 (293)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  +  +..+..+++|++|++++|  ..++.    .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            89999999999988877788899999999999999987542  2  223467899999999999  33343    24678


Q ss_pred             cccceecccCCCccCC-CC-cCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHh
Q 039599          207 KSFEYMGAHGSAISQL-PS-LSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIK  284 (293)
Q Consensus       207 ~~L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~  284 (293)
                      ++|++|++++|.+.+. |. +.         .+..+++|++|++++|.++.+|..+.  ++|+.|++++|+++++|. +.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~---------~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~  291 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAP---------RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PD  291 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCS---------SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TT
T ss_pred             CCCCEEECCCCCCCccchhhHH---------hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hh
Confidence            9999999999999987 65 21         12234799999999999999988774  899999999999999875 67


Q ss_pred             hcccCCCCC
Q 039599          285 QISRLESLD  293 (293)
Q Consensus       285 ~l~~L~~ld  293 (293)
                      .+++|+.|+
T Consensus       292 ~l~~L~~L~  300 (310)
T 4glp_A          292 ELPEVDNLT  300 (310)
T ss_dssp             SCCCCSCEE
T ss_pred             hCCCccEEE
Confidence            788888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=1.4e-19  Score=166.60  Aligned_cols=242  Identities=16%  Similarity=0.132  Sum_probs=160.2

Q ss_pred             ccCCccccEEEEeccceeeeccc---ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCccc--C---CCCCCccEE
Q 039599           25 FSNMSNLRVLKFYIPEISVHMSI---EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDF--P---HISGNITRL   96 (293)
Q Consensus        25 ~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~---~~~~~L~~L   96 (293)
                      +.....++.|++.+|.+......   .++.+.+.++.... .+....+++|+.+++++|......  +   ....+++++
T Consensus       324 ~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L  402 (635)
T 4g8a_A          324 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL  402 (635)
T ss_dssp             GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEE
T ss_pred             cccchhhhhhhcccccccCcCcccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhh
Confidence            44445566666665554422211   15555555554322 233334557777777777643221  1   123467777


Q ss_pred             ecccccccccCccccCCCCCCEEEeccCccccccc-cccccccccceecccccccCCCCChhhhccccCCceecCCCccc
Q 039599           97 YLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTIT  175 (293)
Q Consensus        97 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~  175 (293)
                      ++..+....++..+..+++|+.+++..+......+ ..+..+++++.++++.|......+..+..++.+++|++++|...
T Consensus       403 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~  482 (635)
T 4g8a_A          403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  482 (635)
T ss_dssp             ECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             hccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence            77777776666667777888888887766554433 34567778888888888777667777777888888888887643


Q ss_pred             -ccCCCcccccccCceecCCCC--c-cccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCc
Q 039599          176 -EQRPSSFENVKGLETLGFSEL--D-NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNC  251 (293)
Q Consensus       176 -~~~~~~~~~~~~L~~L~l~~~--~-~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n  251 (293)
                       ...|..|..+++|++|++++|  . ..+..+..+++|++|++++|.+.+++..          .++++++|++|++++|
T Consensus       483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~----------~~~~l~~L~~L~Ls~N  552 (635)
T 4g8a_A          483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF----------PYKCLNSLQVLDYSLN  552 (635)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG----------GGTTCTTCCEEECTTS
T ss_pred             cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh----------HHhCCCCCCEEECCCC
Confidence             345667777888888888887  3 3456677888888888888888777331          2567788888888888


Q ss_pred             cCCc-CCcccCCC-CCCcEEeccCCcCC
Q 039599          252 ALTS-IPQEIGYL-SSLEWLHLRGNNLE  277 (293)
Q Consensus       252 ~i~~-l~~~~~~~-~~L~~L~l~~n~l~  277 (293)
                      .|+. .|.++..+ ++|+.|++++|++.
T Consensus       553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          553 HIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            8887 45566666 57888888888876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=4.1e-20  Score=167.16  Aligned_cols=192  Identities=19%  Similarity=0.214  Sum_probs=138.3

Q ss_pred             CceEEeecCCcCCcccCC-CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599           71 SPVTIDFTSCINLTDFPH-ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL  149 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  149 (293)
                      +++.|++++|. ++.+|. .+.+|++|++++|.++.+|   ..+++|++|++++|.+.+ +|. +..  +|++|++++|.
T Consensus        60 ~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLN-LSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSC-CSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCC-CCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCc
Confidence            67778887777 444665 3457888888888887777   446778888888877655 555 444  78888888876


Q ss_pred             cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCC
Q 039599          150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSS  227 (293)
Q Consensus       150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~  227 (293)
                      +.+ +|.   .+++|++|++++|.+++ +|.   .+++|+.|++++|  ..+|. +.  ++|+.|++++|.++.+|.+..
T Consensus       132 l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~  200 (571)
T 3cvr_A          132 LTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPAVPV  200 (571)
T ss_dssp             CSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCCCC-
T ss_pred             CCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhhHHH
Confidence            655 554   56788888888888864 454   4677888888888  45665 44  788899999998888765221


Q ss_pred             CCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHhhccc
Q 039599          228 GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISR  288 (293)
Q Consensus       228 ~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~  288 (293)
                      .       .....+.|+.|++++|.|+.+|..+..+++|+.|++++|++++ +|..+..+..
T Consensus       201 ~-------L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          201 R-------NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             --------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             h-------hhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            1       0123344599999999999999888889999999999999987 7777776543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=4.3e-22  Score=173.15  Aligned_cols=236  Identities=12%  Similarity=0.124  Sum_probs=172.4

Q ss_pred             hhccCCccccEEEEeccceeeecccceEEEeccCCcccccCCCCC-CCcCceEEeecCCcCC---cccC----------C
Q 039599           23 RAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL-HFVSPVTIDFTSCINL---TDFP----------H   88 (293)
Q Consensus        23 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~---~~~~----------~   88 (293)
                      ..+..+++|++|++++|.+....              ...++..+ .+++|++|++++|...   ..+|          .
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~--------------~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~   91 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEA--------------ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL   91 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHH--------------HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT
T ss_pred             HHHhcCCCccEEECCCCCCCHHH--------------HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh
Confidence            45667777888888877654211              01122222 2458888888887422   2333          2


Q ss_pred             CCCCccEEecccccccc-----cCccccCCCCCCEEEeccCccccccccc----cccc---------cccceeccccccc
Q 039599           89 ISGNITRLYLDETAIEE-----VPSSIKCLTNLKLLRINRCTRLKRVSTS----ICKL---------KSLIALSAYGCLN  150 (293)
Q Consensus        89 ~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~  150 (293)
                      ...+|++|++++|.++.     ++..+..+++|++|++++|.+....+..    +..+         ++|++|++++|.+
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            34689999999998875     6677888999999999999876443333    3344         8999999999977


Q ss_pred             C-CCCC---hhhhccccCCceecCCCcccc-----cCCCcccccccCceecCCCC-------ccccccccCccccceecc
Q 039599          151 L-ERFP---ESLEKMEHLNQINLGRTTITE-----QRPSSFENVKGLETLGFSEL-------DNLSDNIGNFKSFEYMGA  214 (293)
Q Consensus       151 ~-~~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~~-------~~l~~~~~~l~~L~~L~l  214 (293)
                      . ..++   ..+..+++|++|++++|.++.     ..+..+..+++|+.|++++|       ..++..+..+++|++|++
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence            6 3333   467788999999999998863     23336778899999999998       235677889999999999


Q ss_pred             cCCCccCC-CC-cCCCCccCccccc--CCccccceeecCCccCCc-----CCccc-CCCCCCcEEeccCCcCCCCc
Q 039599          215 HGSAISQL-PS-LSSGLVPLSASLL--SGLSLLYWLHLNNCALTS-----IPQEI-GYLSSLEWLHLRGNNLEGLP  280 (293)
Q Consensus       215 ~~~~~~~~-~~-l~~~l~~l~~~~~--~~~~~L~~L~l~~n~i~~-----l~~~~-~~~~~L~~L~l~~n~l~~~p  280 (293)
                      ++|.+... +. +..        .+  +.+++|++|++++|.+++     +|..+ ..+++|+.|++++|++++..
T Consensus       252 ~~n~i~~~~~~~l~~--------~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          252 NDCLLSARGAAAVVD--------AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TTCCCCHHHHHHHHH--------HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCCCchhhHHHHHH--------HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            99998764 11 110        12  347899999999999988     77777 56899999999999999744

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.7e-19  Score=147.54  Aligned_cols=172  Identities=17%  Similarity=0.191  Sum_probs=138.9

Q ss_pred             eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEeccC
Q 039599           49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRC  124 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~  124 (293)
                      .+.++++++. +..+|..+. .+++.|++++|.+.+..+..   +.+|++|++++|.+..+++ .+..+++|++|++++|
T Consensus        16 ~~~l~~~~~~-l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           16 KKEVDCQGKS-LDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GTEEECTTCC-CSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CeEEecCCCC-ccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            5678888876 445676554 58999999999965544433   4589999999999987776 5789999999999999


Q ss_pred             ccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc-c
Q 039599          125 TRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS-D  201 (293)
Q Consensus       125 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~  201 (293)
                      .+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|  ..++ .
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence            988766677889999999999999887666667899999999999999997766667888899999999888  3333 3


Q ss_pred             cccCccccceecccCCCccCC
Q 039599          202 NIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       202 ~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      .+..+++|+++++++|.+...
T Consensus       174 ~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          174 AFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTCTTCCEEECCSCCBCTT
T ss_pred             HHhCCCCCCEEEeeCCceeCC
Confidence            567778888888888887665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=2e-21  Score=165.76  Aligned_cols=242  Identities=12%  Similarity=0.140  Sum_probs=175.2

Q ss_pred             cccEEEEeccceeeec--c---cceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcc-cC---CCCCCccEEeccc
Q 039599           30 NLRVLKFYIPEISVHM--S---IEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTD-FP---HISGNITRLYLDE  100 (293)
Q Consensus        30 ~L~~L~l~~~~~~~~~--~---~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~---~~~~~L~~L~l~~  100 (293)
                      .++.++++++.+....  .   ..++.+++.+|.+.+..+..+.+++|++|++++|.+... ++   ..+.+|++|++++
T Consensus        48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~  127 (336)
T 2ast_B           48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG  127 (336)
T ss_dssp             TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence            3778888887665211  1   238999999998877777777777999999999985433 33   4456899999999


Q ss_pred             cccc-ccCccccCCCCCCEEEeccC-cccc-ccccccccccccceeccccc-ccCCC-CChhhhccc-cCCceecCCC--
Q 039599          101 TAIE-EVPSSIKCLTNLKLLRINRC-TRLK-RVSTSICKLKSLIALSAYGC-LNLER-FPESLEKME-HLNQINLGRT--  172 (293)
Q Consensus       101 ~~~~-~l~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~n--  172 (293)
                      |.+. ..+..++.+++|++|++++| .+.. .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|  
T Consensus       128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~  207 (336)
T 2ast_B          128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  207 (336)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence            9886 56667888999999999998 4443 25666778899999999998 66543 566788888 9999999998  


Q ss_pred             ccc-ccCCCcccccccCceecCCCCc----cccccccCccccceecccCCCccCC-CCcCCCCccCcccccCCcccccee
Q 039599          173 TIT-EQRPSSFENVKGLETLGFSELD----NLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWL  246 (293)
Q Consensus       173 ~~~-~~~~~~~~~~~~L~~L~l~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L  246 (293)
                      .++ +.++..+..+++|+.|++++|.    ..+..+..+++|++|++++|.  .+ +.   .+     ..++.+++|++|
T Consensus       208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~---~~-----~~l~~~~~L~~L  277 (336)
T 2ast_B          208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPE---TL-----LELGEIPTLKTL  277 (336)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGG---GG-----GGGGGCTTCCEE
T ss_pred             cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHH---HH-----HHHhcCCCCCEE
Confidence            454 3445566788999999999882    445577788999999999986  22 11   00     125678899999


Q ss_pred             ecCCccCCcCCcccCCC-CCCcEEeccCCcCCC-CchhHh
Q 039599          247 HLNNCALTSIPQEIGYL-SSLEWLHLRGNNLEG-LPASIK  284 (293)
Q Consensus       247 ~l~~n~i~~l~~~~~~~-~~L~~L~l~~n~l~~-~p~~l~  284 (293)
                      ++++| +++-  .+..+ ..++.|++++|++++ .|+.+.
T Consensus       278 ~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          278 QVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             ECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             eccCc-cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence            99998 4431  12222 235666789999987 555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=3.1e-19  Score=149.19  Aligned_cols=144  Identities=20%  Similarity=0.271  Sum_probs=72.3

Q ss_pred             cCceEEeecCCcCCcccCC--CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccc
Q 039599           70 VSPVTIDFTSCINLTDFPH--ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYG  147 (293)
Q Consensus        70 ~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  147 (293)
                      .+|+.|++++|. ...++.  .+.+|++|++++|.+..+++ +..+++|++|++++|.+.. ++ .+..+++|++|++++
T Consensus        46 ~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           46 NSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred             CcccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence            356666666665 333332  13455666666666655554 5556666666666655433 22 245555566666655


Q ss_pred             cccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCC
Q 039599          148 CLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       148 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      |.+.+ + +.+..+++|++|++++|.+++.  ..+..+++|+.|++++|  ..++. +..+++|++|++++|.++++
T Consensus       122 n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          122 NGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             SCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred             CcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC
Confidence            54433 2 3455555555555555555432  33444555555555544  22222 44444444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=1.7e-21  Score=169.38  Aligned_cols=214  Identities=17%  Similarity=0.156  Sum_probs=164.9

Q ss_pred             CcCceEEeecCCcCCccc-------CCCCCCccEEeccccccc----ccCcc-------ccCCCCCCEEEeccCcccc--
Q 039599           69 FVSPVTIDFTSCINLTDF-------PHISGNITRLYLDETAIE----EVPSS-------IKCLTNLKLLRINRCTRLK--  128 (293)
Q Consensus        69 ~~~L~~L~l~~~~~~~~~-------~~~~~~L~~L~l~~~~~~----~l~~~-------~~~l~~L~~L~l~~~~~~~--  128 (293)
                      +++|+.|++++|.+....       -..+.+|++|++++|.+.    .+|..       +..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            458999999999855432       224668999999997654    33433       3688999999999998776  


Q ss_pred             --ccccccccccccceecccccccCCC----CChhhhcc---------ccCCceecCCCcccc-cCC---CcccccccCc
Q 039599          129 --RVSTSICKLKSLIALSAYGCLNLER----FPESLEKM---------EHLNQINLGRTTITE-QRP---SSFENVKGLE  189 (293)
Q Consensus       129 --~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~n~~~~-~~~---~~~~~~~~L~  189 (293)
                        .++..+..+++|++|++++|.+...    ++..+..+         ++|++|++++|.++. .++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              4667788899999999999977533    33334445         899999999999963 333   3566789999


Q ss_pred             eecCCCC--c------cccccccCccccceecccCCCccC-----CCCcCCCCccCcccccCCccccceeecCCccCCc-
Q 039599          190 TLGFSEL--D------NLSDNIGNFKSFEYMGAHGSAISQ-----LPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-  255 (293)
Q Consensus       190 ~L~l~~~--~------~l~~~~~~l~~L~~L~l~~~~~~~-----~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-  255 (293)
                      .|++++|  .      ..+..+..+++|++|++++|.++.     +|.           .+..+++|++|++++|.+++ 
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-----------~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-----------ALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-----------HGGGCTTCCEEECTTCCCCHH
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-----------HHccCCCcCEEECCCCCCchh
Confidence            9999999  2      123377889999999999999852     233           25677899999999999986 


Q ss_pred             ----CCccc--CCCCCCcEEeccCCcCCC-----CchhH-hhcccCCCCC
Q 039599          256 ----IPQEI--GYLSSLEWLHLRGNNLEG-----LPASI-KQISRLESLD  293 (293)
Q Consensus       256 ----l~~~~--~~~~~L~~L~l~~n~l~~-----~p~~l-~~l~~L~~ld  293 (293)
                          ++..+  ..+++|+.|++++|.+++     +|..+ ..+++|+.||
T Consensus       260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  309 (386)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence                35566  349999999999999997     88877 4578888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.80  E-value=2.1e-21  Score=167.34  Aligned_cols=248  Identities=12%  Similarity=0.102  Sum_probs=134.9

Q ss_pred             EeecCcccceeechhhccCCccccEEEEeccceeeecccceEEEeccCCcccccCCCCC-CCc-CceEEeecCCcCCccc
Q 039599            9 FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL-HFV-SPVTIDFTSCINLTDF   86 (293)
Q Consensus         9 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~-~L~~L~l~~~~~~~~~   86 (293)
                      +.+++.+...+..+..+...++|++|++++|.+......              .+...+ .++ +|++|++++|.+....
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--------------~l~~~l~~~~~~L~~L~Ls~N~l~~~~   67 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTV--------------ELIQAFANTPASVTSLNLSGNSLGFKN   67 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHH--------------HHHHHHHTCCTTCCEEECCSSCGGGSC
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHH--------------HHHHHHHhCCCceeEEECcCCCCCHHH
Confidence            457778777766665666666699999988876532100              000111 123 5566666666533221


Q ss_pred             CC--------CCCCccEEecccccccccCcc-----ccCC-CCCCEEEeccCccccccccccc----c-ccccceecccc
Q 039599           87 PH--------ISGNITRLYLDETAIEEVPSS-----IKCL-TNLKLLRINRCTRLKRVSTSIC----K-LKSLIALSAYG  147 (293)
Q Consensus        87 ~~--------~~~~L~~L~l~~~~~~~l~~~-----~~~l-~~L~~L~l~~~~~~~~~~~~l~----~-l~~L~~L~l~~  147 (293)
                      +.        ...+|++|++++|.++..+..     +..+ ++|++|++++|.+....+..+.    . .++|++|++++
T Consensus        68 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  147 (362)
T 3goz_A           68 SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG  147 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred             HHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence            11        124566666666666543321     3333 5666666666665443333222    2 24666666666


Q ss_pred             cccCCC----CChhhhccc-cCCceecCCCcccccCCCccc----cc-ccCceecCCCC--cc-----ccccccC-cccc
Q 039599          148 CLNLER----FPESLEKME-HLNQINLGRTTITEQRPSSFE----NV-KGLETLGFSEL--DN-----LSDNIGN-FKSF  209 (293)
Q Consensus       148 ~~~~~~----~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~----~~-~~L~~L~l~~~--~~-----l~~~~~~-l~~L  209 (293)
                      |.+...    ++..+..++ +|++|++++|.+++..+..+.    .+ ++|+.|++++|  ..     ++..+.. .++|
T Consensus       148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L  227 (362)
T 3goz_A          148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV  227 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred             CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence            655532    223334443 667777777766554443332    23 46777777666  22     3444444 3467


Q ss_pred             ceecccCCCccCCCC--cCCCCccCcccccCCccccceeecCCccCCc--------CCcccCCCCCCcEEeccCCcCCC
Q 039599          210 EYMGAHGSAISQLPS--LSSGLVPLSASLLSGLSLLYWLHLNNCALTS--------IPQEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       210 ~~L~l~~~~~~~~~~--l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~--------l~~~~~~~~~L~~L~l~~n~l~~  278 (293)
                      ++|++++|.+.+.+.  +..        .+..+++|++|++++|.+.+        ++..+..+++|+.||+++|++..
T Consensus       228 ~~L~Ls~N~l~~~~~~~l~~--------~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          228 VSLNLCLNCLHGPSLENLKL--------LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CEEECCSSCCCCCCHHHHHH--------TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             eEEECcCCCCCcHHHHHHHH--------HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            777777777666521  110        13456667777777776333        23345566777777777777664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=3.4e-21  Score=164.29  Aligned_cols=218  Identities=17%  Similarity=0.217  Sum_probs=168.9

Q ss_pred             eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC--CCCccEEecccccccc--cCccccCCCCCCEEEeccC
Q 039599           49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI--SGNITRLYLDETAIEE--VPSSIKCLTNLKLLRINRC  124 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~  124 (293)
                      ++.++++++.+.......+...+++.+++++|.+.+..+..  +.+|++|++++|.+..  ++..+..+++|++|++++|
T Consensus        49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~  128 (336)
T 2ast_B           49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL  128 (336)
T ss_dssp             SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             heeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence            77888888765421111111258999999999866555443  3589999999999863  6777889999999999999


Q ss_pred             ccccccccccccccccceecccccc-cCC-CCChhhhccccCCceecCCC-ccccc-CCCcccccc-cCceecCCCC---
Q 039599          125 TRLKRVSTSICKLKSLIALSAYGCL-NLE-RFPESLEKMEHLNQINLGRT-TITEQ-RPSSFENVK-GLETLGFSEL---  196 (293)
Q Consensus       125 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~l~~~---  196 (293)
                      .+....+..++.+++|++|++++|. +.+ .++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++|   
T Consensus       129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~  208 (336)
T 2ast_B          129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  208 (336)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence            8777778888899999999999994 443 36667889999999999999 88654 455677889 9999999998   


Q ss_pred             ---ccccccccCccccceecccCCC-ccCC-CCcCCCCccCcccccCCccccceeecCCcc-CCc-CCcccCCCCCCcEE
Q 039599          197 ---DNLSDNIGNFKSFEYMGAHGSA-ISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCA-LTS-IPQEIGYLSSLEWL  269 (293)
Q Consensus       197 ---~~l~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~-i~~-l~~~~~~~~~L~~L  269 (293)
                         ..++..+..+++|++|++++|. +++. +.           .+..+++|++|++++|. +++ ....+..+++|+.|
T Consensus       209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  277 (336)
T 2ast_B          209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-----------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  277 (336)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-----------GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-----------HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence               3446667789999999999998 5443 22           25677999999999994 443 22357789999999


Q ss_pred             eccCCcCCC
Q 039599          270 HLRGNNLEG  278 (293)
Q Consensus       270 ~l~~n~l~~  278 (293)
                      ++++| ++.
T Consensus       278 ~l~~~-i~~  285 (336)
T 2ast_B          278 QVFGI-VPD  285 (336)
T ss_dssp             ECTTS-SCT
T ss_pred             eccCc-cCH
Confidence            99999 654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=2.6e-19  Score=153.53  Aligned_cols=226  Identities=15%  Similarity=0.162  Sum_probs=147.0

Q ss_pred             EEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC----CCCccEEecccccc-cccCc-cccCCCCCCEE-Eecc
Q 039599           51 LLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI----SGNITRLYLDETAI-EEVPS-SIKCLTNLKLL-RINR  123 (293)
Q Consensus        51 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~~~~-~~l~~-~~~~l~~L~~L-~l~~  123 (293)
                      .++++++. +..+|..+ ..++++|++++|. ++.+|..    +.+|++|++++|.+ +.++. +|.++++++++ .+.+
T Consensus        13 ~v~C~~~~-Lt~iP~~l-~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESK-VTEIPSDL-PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTT-CCSCCTTC-CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCC-CCccCcCc-CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            34455544 34566654 2378888888887 5556542    34678888888876 34554 56777777654 4444


Q ss_pred             CccccccccccccccccceecccccccCCCCChhhhccccCCceecCC-CcccccCCCccccc-ccCceecCCCC--ccc
Q 039599          124 CTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR-TTITEQRPSSFENV-KGLETLGFSEL--DNL  199 (293)
Q Consensus       124 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~-~~L~~L~l~~~--~~l  199 (293)
                      |.+....+..+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+ ..++.|++++|  ..+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            555554456677788888888888866655555555566677777755 45544333445554 35777888877  566


Q ss_pred             cccccCccccceecccC-CCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCC-cCC
Q 039599          200 SDNIGNFKSFEYMGAHG-SAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGN-NLE  277 (293)
Q Consensus       200 ~~~~~~l~~L~~L~l~~-~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n-~l~  277 (293)
                      +.......+++++.+.+ |.++.+|.-          .|.++++|++|++++|.|+.+|..  .+.+|+.|.+.++ .++
T Consensus       170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~----------~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~  237 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNNNLEELPND----------VFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLK  237 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCTTCCCCCTT----------TTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCC
T ss_pred             ChhhccccchhHHhhccCCcccCCCHH----------HhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcC
Confidence            66666667788888764 666666531          256788889999999988888763  3667777776554 566


Q ss_pred             CCchhHhhcccCCCC
Q 039599          278 GLPASIKQISRLESL  292 (293)
Q Consensus       278 ~~p~~l~~l~~L~~l  292 (293)
                      .+|. +..+++|+.+
T Consensus       238 ~lP~-l~~l~~L~~l  251 (350)
T 4ay9_X          238 KLPT-LEKLVALMEA  251 (350)
T ss_dssp             CCCC-TTTCCSCCEE
T ss_pred             cCCC-chhCcChhhC
Confidence            7774 6666766654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=1.1e-18  Score=138.71  Aligned_cols=174  Identities=17%  Similarity=0.178  Sum_probs=104.0

Q ss_pred             EEeecCCcCCcccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccC
Q 039599           74 TIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL  151 (293)
Q Consensus        74 ~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  151 (293)
                      .++.+++. .+.+|... .++++|++++|.+..+++ .+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus        11 ~v~c~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           11 TVECYSQG-RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             EEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEecCCC-ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence            34444444 34444332 356666777766666655 3566777777777776655443444566677777777776655


Q ss_pred             CCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCCccCCCCcCCC
Q 039599          152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQLPSLSSG  228 (293)
Q Consensus       152 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~~  228 (293)
                      +..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|  ..++. .+..+++|+++++++|.+..       
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------  162 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------  162 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------
Confidence            444455666777777777777775544444566666666666666  23332 34556666666666665432       


Q ss_pred             CccCcccccCCccccceeecCCccCCc-CCcccCCCCC
Q 039599          229 LVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSS  265 (293)
Q Consensus       229 l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~  265 (293)
                                .+++|++|+++.|.+++ +|.+++.++.
T Consensus       163 ----------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 ----------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ----------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ----------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence                      34556777777776665 6666665544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.80  E-value=2.6e-21  Score=166.79  Aligned_cols=220  Identities=10%  Similarity=0.041  Sum_probs=158.5

Q ss_pred             EeccCCcccccCCCCCCCc-CceEEeecCCcCCcccC-------CCCC-CccEEecccccccccC-ccccCC-----CCC
Q 039599           52 LDSKGCKILRSFPSNLHFV-SPVTIDFTSCINLTDFP-------HISG-NITRLYLDETAIEEVP-SSIKCL-----TNL  116 (293)
Q Consensus        52 L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~-------~~~~-~L~~L~l~~~~~~~l~-~~~~~l-----~~L  116 (293)
                      ..++++.+.+.+|..+..+ +|++|++++|.+....+       ...+ +|++|++++|.++... ..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566677666667666666 69999999999443322       1244 8999999999997653 345443     899


Q ss_pred             CEEEeccCcccccccccccc----c-cccceecccccccCCCCChhhh----c-cccCCceecCCCcccccCCCc----c
Q 039599          117 KLLRINRCTRLKRVSTSICK----L-KSLIALSAYGCLNLERFPESLE----K-MEHLNQINLGRTTITEQRPSS----F  182 (293)
Q Consensus       117 ~~L~l~~~~~~~~~~~~l~~----l-~~L~~L~l~~~~~~~~~~~~~~----~-l~~L~~L~l~~n~~~~~~~~~----~  182 (293)
                      ++|++++|.+....+..+..    + ++|++|++++|.+.+..+..+.    . .++|++|++++|.+++.....    +
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            99999999877665554443    4 8999999999988766555443    3 368999999999997544333    3


Q ss_pred             cccc-cCceecCCCC---ccc----cccccCc-cccceecccCCCccCCCC--cCCCCccCcccccCC-ccccceeecCC
Q 039599          183 ENVK-GLETLGFSEL---DNL----SDNIGNF-KSFEYMGAHGSAISQLPS--LSSGLVPLSASLLSG-LSLLYWLHLNN  250 (293)
Q Consensus       183 ~~~~-~L~~L~l~~~---~~l----~~~~~~l-~~L~~L~l~~~~~~~~~~--l~~~l~~l~~~~~~~-~~~L~~L~l~~  250 (293)
                      ...+ +|++|++++|   ...    ...+... ++|++|++++|.+.....  +..        .+.. .++|++|++++
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~--------~l~~~~~~L~~L~Ls~  234 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY--------IFSSIPNHVVSLNLCL  234 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH--------HHHHSCTTCCEEECCS
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH--------HHhcCCCCceEEECcC
Confidence            4444 8999999999   222    2244455 599999999999887411  110        1222 45899999999


Q ss_pred             ccCCcCC-----cccCCCCCCcEEeccCCcCCCC
Q 039599          251 CALTSIP-----QEIGYLSSLEWLHLRGNNLEGL  279 (293)
Q Consensus       251 n~i~~l~-----~~~~~~~~L~~L~l~~n~l~~~  279 (293)
                      |.+++.+     ..+..+++|+.|++++|.+.++
T Consensus       235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i  268 (362)
T 3goz_A          235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM  268 (362)
T ss_dssp             SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred             CCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence            9998743     3357789999999999996653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=3.5e-19  Score=161.09  Aligned_cols=182  Identities=17%  Similarity=0.230  Sum_probs=135.7

Q ss_pred             eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEecccccccccCccccCCCCCCEEEeccCcccc
Q 039599           49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLK  128 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~  128 (293)
                      ++.|++++|.+.+ +|..+. ++|++|++++|. ++.+|..+.+|++|++++|.++.+|. +..  +|++|++++|.+.+
T Consensus        61 L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~-l~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~  134 (571)
T 3cvr_A           61 FSELQLNRLNLSS-LPDNLP-PQITVLEITQNA-LISLPELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM  134 (571)
T ss_dssp             CSEEECCSSCCSC-CCSCCC-TTCSEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC
T ss_pred             ccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCC-CcccccccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC
Confidence            6677777776544 666542 688899998888 44777666788888999888888887 554  88899998887665


Q ss_pred             ccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCc
Q 039599          129 RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNF  206 (293)
Q Consensus       129 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l  206 (293)
                       +|.   .+++|++|++++|.+.+ +|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|  ..+|. +.. 
T Consensus       135 -lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~-  200 (571)
T 3cvr_A          135 -LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV-  200 (571)
T ss_dssp             -CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC--
T ss_pred             -CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH-
Confidence             555   57888899998887665 555   56788899999998865 665 54  88899999888  55665 433 


Q ss_pred             ccc-------ceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCC
Q 039599          207 KSF-------EYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGY  262 (293)
Q Consensus       207 ~~L-------~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~  262 (293)
                       +|       +.|++++|.++.+|.           .+..+++|+.|++++|.+++ +|..+..
T Consensus       201 -~L~~~~~~L~~L~Ls~N~l~~lp~-----------~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          201 -RNHHSEETEIFFRCRENRITHIPE-----------NILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             --------CCEEEECCSSCCCCCCG-----------GGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             -hhhcccccceEEecCCCcceecCH-----------HHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence             66       999999999998876           23457889999999999887 6665544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=5.7e-19  Score=140.28  Aligned_cols=178  Identities=15%  Similarity=0.175  Sum_probs=146.3

Q ss_pred             ccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCC
Q 039599           93 ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT  172 (293)
Q Consensus        93 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n  172 (293)
                      -+.++.+++++..+|..+  .+++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            357788888898888755  468999999999887655566789999999999999887666667889999999999999


Q ss_pred             cccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecC
Q 039599          173 TITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLN  249 (293)
Q Consensus       173 ~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~  249 (293)
                      .+++..+..+..+++|++|++++|  ..++. .+..+++|++|++++|.+.+++.-          .+..+++|++|+++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----------~~~~l~~L~~L~l~  156 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG----------VFDRLTSLQYIWLH  156 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT----------TTTTCTTCCEEECC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH----------HhccCCCccEEEec
Confidence            997666666889999999999998  44443 467899999999999999888441          25678899999999


Q ss_pred             CccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHhhccc
Q 039599          250 NCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISR  288 (293)
Q Consensus       250 ~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~  288 (293)
                      +|.+.      +.+++|+.|+++.|++++ +|+.++.++.
T Consensus       157 ~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          157 DNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             SCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            99654      457789999999999997 8888776653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=7.3e-18  Score=144.55  Aligned_cols=228  Identities=16%  Similarity=0.099  Sum_probs=165.8

Q ss_pred             cEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCC-C---CCccE-Eeccccc
Q 039599           32 RVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHI-S---GNITR-LYLDETA  102 (293)
Q Consensus        32 ~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~-~---~~L~~-L~l~~~~  102 (293)
                      +.++-++++++..+ .+  .+++|++++|.+...-+..+. +++|++|++++|.+.+.+|.. +   .++.+ +.+..|+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            45566666665332 33  399999999986544334555 559999999999977777643 2   34444 4667788


Q ss_pred             ccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC-hhhhccc-cCCceecCCCcccccCC
Q 039599          103 IEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKME-HLNQINLGRTTITEQRP  179 (293)
Q Consensus       103 ~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~-~L~~L~l~~n~~~~~~~  179 (293)
                      +..+++ .|..+++|++|++++|.+....+..+....++..+++.++.....++ ..+..+. .++.|++++|.++. ++
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~  170 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IH  170 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-EC
T ss_pred             ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CC
Confidence            988865 78999999999999998766555555567778888887765555444 4455554 68899999999965 44


Q ss_pred             CcccccccCceecCCCC---ccccc-cccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCc-cCC
Q 039599          180 SSFENVKGLETLGFSEL---DNLSD-NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNC-ALT  254 (293)
Q Consensus       180 ~~~~~~~~L~~L~l~~~---~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n-~i~  254 (293)
                      .......+|+.+.+.++   +.++. .+..+++|++|++++|.++.+|.             ..+.+|+.|.+.++ .++
T Consensus       171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-------------~~~~~L~~L~~l~~~~l~  237 (350)
T 4ay9_X          171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-------------YGLENLKKLRARSTYNLK  237 (350)
T ss_dssp             TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-------------SSCTTCCEEECTTCTTCC
T ss_pred             hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-------------hhhccchHhhhccCCCcC
Confidence            44445678999999864   56664 56889999999999999999865             23455666666555 567


Q ss_pred             cCCcccCCCCCCcEEeccCC
Q 039599          255 SIPQEIGYLSSLEWLHLRGN  274 (293)
Q Consensus       255 ~l~~~~~~~~~L~~L~l~~n  274 (293)
                      .+|. +..+++|+.++++++
T Consensus       238 ~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          238 KLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCC-TTTCCSCCEEECSCH
T ss_pred             cCCC-chhCcChhhCcCCCC
Confidence            7884 788999999999764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=1.3e-18  Score=136.98  Aligned_cols=151  Identities=13%  Similarity=0.178  Sum_probs=97.3

Q ss_pred             cCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCce
Q 039599          111 KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLET  190 (293)
Q Consensus       111 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  190 (293)
                      ..+++|++|++++|.+. .++ .+..+++|++|++++|... . ++.+..+++|++|++++|.+++..+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34455556666555443 233 3555556666666655221 1 234556666666666666665555556666666777


Q ss_pred             ecCCCC---ccccccccCccccceecccCCC-ccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCC
Q 039599          191 LGFSEL---DNLSDNIGNFKSFEYMGAHGSA-ISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSL  266 (293)
Q Consensus       191 L~l~~~---~~l~~~~~~l~~L~~L~l~~~~-~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L  266 (293)
                      |++++|   ...+..+..+++|++|++++|. +..+|.            +..+++|++|++++|.+++++ .+..+++|
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~------------l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L  183 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP------------LKTLPELKSLNIQFDGVHDYR-GIEDFPKL  183 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG------------GGGCSSCCEEECTTBCCCCCT-TGGGCSSC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh------------hcCCCCCCEEECCCCCCcChH-HhccCCCC
Confidence            766666   2345566677777888888886 666543            567888999999999998877 67889999


Q ss_pred             cEEeccCCcCCC
Q 039599          267 EWLHLRGNNLEG  278 (293)
Q Consensus       267 ~~L~l~~n~l~~  278 (293)
                      +.|++++|++.+
T Consensus       184 ~~L~l~~N~i~~  195 (197)
T 4ezg_A          184 NQLYAFSQTIGG  195 (197)
T ss_dssp             CEEEECBC----
T ss_pred             CEEEeeCcccCC
Confidence            999999998764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=4.5e-18  Score=155.31  Aligned_cols=143  Identities=20%  Similarity=0.278  Sum_probs=63.7

Q ss_pred             CceEEeecCCcCCcccCC--CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599           71 SPVTIDFTSCINLTDFPH--ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC  148 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  148 (293)
                      +|+.|++++|. +..++.  .+.+|+.|++++|.+..+++ +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|
T Consensus        44 ~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           44 SIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             TCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTS
T ss_pred             CCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCC
Confidence            45555555554 223321  12345555555555544443 4455555555555544332 11 3444555555555554


Q ss_pred             ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCC
Q 039599          149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      .+.+ + +.+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|  ..++. +..+++|+.|++++|.+.++
T Consensus       120 ~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          120 GISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             CCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC
Confidence            4332 1 2344445555555555544332  33444444444444444  22221 34444444444444444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=2.9e-18  Score=143.26  Aligned_cols=170  Identities=19%  Similarity=0.274  Sum_probs=146.8

Q ss_pred             CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599           90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL  169 (293)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  169 (293)
                      +.+|++|++++|.+..++. +..+++|++|++++|.+....+  +..+++|++|++++|.+.+ + +.+..+++|++|++
T Consensus        45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSL  119 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEEC
T ss_pred             cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEEC
Confidence            4589999999999998864 8889999999999998766433  8899999999999997654 3 44899999999999


Q ss_pred             CCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceee
Q 039599          170 GRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLH  247 (293)
Q Consensus       170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~  247 (293)
                      ++|.+.+.  ..+..+++|+.|++++|  ..+ ..+..+++|++|++++|.+.+++.            +..+++|++|+
T Consensus       120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~------------l~~l~~L~~L~  184 (291)
T 1h6t_A          120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP------------LAGLTKLQNLY  184 (291)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG------------GTTCTTCCEEE
T ss_pred             CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh------------hcCCCccCEEE
Confidence            99999653  56888999999999999  444 578899999999999999988754            46789999999


Q ss_pred             cCCccCCcCCcccCCCCCCcEEeccCCcCCCCc
Q 039599          248 LNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLP  280 (293)
Q Consensus       248 l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p  280 (293)
                      +++|.+++++. +..+++|+.|++++|+++..|
T Consensus       185 L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          185 LSKNHISDLRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             CCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence            99999999875 889999999999999988654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=2.8e-18  Score=135.13  Aligned_cols=148  Identities=12%  Similarity=0.162  Sum_probs=81.6

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      ++++|++++|.+..+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            4444455555455444 3455555555555555322  122344555555555555555444445555555566666666


Q ss_pred             CcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeec
Q 039599          172 TTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL  248 (293)
Q Consensus       172 n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l  248 (293)
                      |.+++..+..+..+++|+.|++++|   ..++ .+..+++|++|++++|.+.+++.            +..+++|++|++
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~------------l~~l~~L~~L~l  188 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG------------IEDFPKLNQLYA  188 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTT------------GGGCSSCCEEEE
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHH------------hccCCCCCEEEe
Confidence            5555444445555556666666555   2233 45566677777777777766643            456777888888


Q ss_pred             CCccCCc
Q 039599          249 NNCALTS  255 (293)
Q Consensus       249 ~~n~i~~  255 (293)
                      ++|+|.+
T Consensus       189 ~~N~i~~  195 (197)
T 4ezg_A          189 FSQTIGG  195 (197)
T ss_dssp             CBC----
T ss_pred             eCcccCC
Confidence            8887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=1.9e-20  Score=169.98  Aligned_cols=189  Identities=17%  Similarity=0.155  Sum_probs=153.0

Q ss_pred             CCCccEEecccccccccCccccCCCCCCEEEeccCc-------------cccccccccccccccceec-ccccccCCCCC
Q 039599           90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCT-------------RLKRVSTSICKLKSLIALS-AYGCLNLERFP  155 (293)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~  155 (293)
                      ..+|+.|++++|.++.+|+.++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.+.+. .++
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~  426 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLR  426 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHH
T ss_pred             CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhh
Confidence            457889999999999999999999999999987653             3445566777888888888 5554321 111


Q ss_pred             h------hhhc--cccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCc
Q 039599          156 E------SLEK--MEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSL  225 (293)
Q Consensus       156 ~------~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l  225 (293)
                      .      .+..  ...|+.|++++|.+++ +|. +..+++|+.|++++|  ..+|..++.+++|+.|++++|.++++|. 
T Consensus       427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~-  503 (567)
T 1dce_A          427 SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-  503 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-
T ss_pred             hhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcc-
Confidence            1      1111  1358999999999965 665 899999999999999  7788999999999999999999998875 


Q ss_pred             CCCCccCcccccCCccccceeecCCccCCcC--CcccCCCCCCcEEeccCCcCCCCchh----HhhcccCCCCC
Q 039599          226 SSGLVPLSASLLSGLSLLYWLHLNNCALTSI--PQEIGYLSSLEWLHLRGNNLEGLPAS----IKQISRLESLD  293 (293)
Q Consensus       226 ~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l--~~~~~~~~~L~~L~l~~n~l~~~p~~----l~~l~~L~~ld  293 (293)
                                 ++.+++|++|++++|.|+++  |..+..+++|+.|++++|+++++|+.    +..+++|+.||
T Consensus       504 -----------l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          504 -----------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -----------GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             -----------cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence                       67889999999999999996  89999999999999999999986543    33478888764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=5.1e-18  Score=139.67  Aligned_cols=142  Identities=19%  Similarity=0.258  Sum_probs=68.7

Q ss_pred             CceEEeecCCcCCcccC--CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599           71 SPVTIDFTSCINLTDFP--HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC  148 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  148 (293)
                      ++..++++++. .++++  ..+.+|++|++++|++..++ .+..+++|++|++++|.+... +. +..+++|++|++++|
T Consensus        20 ~l~~l~l~~~~-i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           20 NAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHTCSC-TTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSS
T ss_pred             HHHHHHhcCCC-cccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCC
Confidence            34444555554 22222  12335556666666655555 455556666666665554432 22 555555666666555


Q ss_pred             ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCC
Q 039599          149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      .+.+ ++.. .. ++|++|++++|.+++.  +.+..+++|+.|++++|  ..++ .+..+++|++|++++|.+.+.
T Consensus        96 ~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           96 RLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             ccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence            4433 2221 11 5555555555555432  23445555555555555  2222 344445555555555544444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.74  E-value=3.6e-19  Score=162.98  Aligned_cols=285  Identities=14%  Similarity=0.159  Sum_probs=144.2

Q ss_pred             eEEEEeecCcccceeech--hhccCCccccEEEEeccceeeec----------ccceEEEeccCCcccc----cCCCCC-
Q 039599            5 IESIFLNLSTIKGINLNL--RAFSNMSNLRVLKFYIPEISVHM----------SIEEQLLDSKGCKILR----SFPSNL-   67 (293)
Q Consensus         5 ~~~i~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~----------~~~l~~L~l~~~~~~~----~~~~~~-   67 (293)
                      ++.+  ++++|.......  .....+++|++|++++|.+....          .-.|++|++++|...+    .++..+ 
T Consensus       140 L~~L--~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~  217 (592)
T 3ogk_B          140 LETL--KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR  217 (592)
T ss_dssp             CCEE--EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred             CcEE--ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence            4445  666665322211  12347788888888888764221          0127778887776541    122221 


Q ss_pred             CCcCceEEeecCCcCCcccC------------------------------CCCCCccEEecccccccccCccccCCCCCC
Q 039599           68 HFVSPVTIDFTSCINLTDFP------------------------------HISGNITRLYLDETAIEEVPSSIKCLTNLK  117 (293)
Q Consensus        68 ~~~~L~~L~l~~~~~~~~~~------------------------------~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~  117 (293)
                      .+++|+.|++++|...+ +|                              ..+.+|+.++++++....+|..+..+++|+
T Consensus       218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~  296 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR  296 (592)
T ss_dssp             HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred             hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence            24577777777765321 11                              112244555555444445555556666777


Q ss_pred             EEEeccCccccccc-cccccccccceecccccccCCCCChhhhccccCCceecCC-----------CcccccCCCc-ccc
Q 039599          118 LLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR-----------TTITEQRPSS-FEN  184 (293)
Q Consensus       118 ~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----------n~~~~~~~~~-~~~  184 (293)
                      +|++++|.+..... ..+..+++|++|+++.+.....++.....+++|++|++++           +.+++..... ...
T Consensus       297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~  376 (592)
T 3ogk_B          297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG  376 (592)
T ss_dssp             EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred             EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence            77777766433222 2245566666666663311122223334556666666662           3333221111 233


Q ss_pred             cccCceecCCCC---cccccccc-Cccccceeccc----CCCccCCCC---c------CCCCccCcccc-----------
Q 039599          185 VKGLETLGFSEL---DNLSDNIG-NFKSFEYMGAH----GSAISQLPS---L------SSGLVPLSASL-----------  236 (293)
Q Consensus       185 ~~~L~~L~l~~~---~~l~~~~~-~l~~L~~L~l~----~~~~~~~~~---l------~~~l~~l~~~~-----------  236 (293)
                      +++|+.|++..+   +.....+. .+++|+.|++.    .+.+++.|.   +      .++|+.|+++.           
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence            566666666433   11122222 25566666664    344444321   0      14455555421           


Q ss_pred             --cCCccccceeecCCccCCc--CCcccCCCCCCcEEeccCCcCCC--CchhHhhcccCCCC
Q 039599          237 --LSGLSLLYWLHLNNCALTS--IPQEIGYLSSLEWLHLRGNNLEG--LPASIKQISRLESL  292 (293)
Q Consensus       237 --~~~~~~L~~L~l~~n~i~~--l~~~~~~~~~L~~L~l~~n~l~~--~p~~l~~l~~L~~l  292 (293)
                        ...+++|++|++++|.+++  ++..+..+++|+.|++++|.+++  ++..+..+++|+.|
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  518 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL  518 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred             HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence              1135667777777776665  44445666777777777776653  44444556666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=4.1e-17  Score=130.65  Aligned_cols=149  Identities=12%  Similarity=0.112  Sum_probs=104.8

Q ss_pred             eEEeecCCcCCcccCCCCC-CccEEecccccccccCc--cccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599           73 VTIDFTSCINLTDFPHISG-NITRLYLDETAIEEVPS--SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL  149 (293)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  149 (293)
                      +.++++++. ++.+|..+. .+++|++++|.+..+++  .+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus        14 ~~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            466777766 555665543 56777888777776643  46777888888888877666555567777788888888877


Q ss_pred             cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccc-cccccCccccceecccCCCccCC
Q 039599          150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      +.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|  ..+ +..+..+++|+++++++|.+...
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            76666666777788888888888877666667777777777777777  333 55666677777777777766544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.5e-17  Score=143.22  Aligned_cols=175  Identities=20%  Similarity=0.167  Sum_probs=97.8

Q ss_pred             eEEeecCCcCCcccCCCCC-CccEEecccccccccCcc-cc-CCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599           73 VTIDFTSCINLTDFPHISG-NITRLYLDETAIEEVPSS-IK-CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL  149 (293)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  149 (293)
                      +.++.+++. ++.+|..++ .++.|++++|.+..++.. +. .+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus        21 ~~l~c~~~~-l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQ-LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSC-CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCC-cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            456666665 555665443 566777777777666553 33 66677777777666555444556666666666666665


Q ss_pred             cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCccccccccCccccceecccCCCccCCCC-cCCC
Q 039599          150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPS-LSSG  228 (293)
Q Consensus       150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~~  228 (293)
                      +....+..|..+++|++|++++|.+.+..+..|..+++|+.|+                     +++|.+..+|. ... 
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~---------------------L~~N~l~~l~~~~~~-  157 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY---------------------LSQNQISRFPVELIK-  157 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE---------------------CCSSCCCSCCGGGTC-
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE---------------------CCCCcCCeeCHHHhc-
Confidence            5444444556666666666666666554444455555555554                     44455554432 100 


Q ss_pred             CccCcccccCCccccceeecCCccCCcCCc-ccCCCCC--CcEEeccCCcCC
Q 039599          229 LVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSS--LEWLHLRGNNLE  277 (293)
Q Consensus       229 l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~--L~~L~l~~n~l~  277 (293)
                             .+..+++|+.|++++|.|+.+|. .+..++.  ++.|++++|.+.
T Consensus       158 -------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          158 -------DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             -----------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             -------CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence                   01345566666666666666542 3444554  355666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.72  E-value=1.2e-19  Score=166.19  Aligned_cols=265  Identities=13%  Similarity=0.094  Sum_probs=142.3

Q ss_pred             CCccccEEEEeccceeeec-----cc--c-eEEEeccCCccccc--CCCCC-CCcCceEEeecCCcCCcc-------cCC
Q 039599           27 NMSNLRVLKFYIPEISVHM-----SI--E-EQLLDSKGCKILRS--FPSNL-HFVSPVTIDFTSCINLTD-------FPH   88 (293)
Q Consensus        27 ~~~~L~~L~l~~~~~~~~~-----~~--~-l~~L~l~~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~-------~~~   88 (293)
                      .+++|++|++++|.+....     ..  . |++|++++|.....  ++... .+++|++|++++|.+...       ++.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            6777888888877654221     11  2 77788877752211  11111 345777777777764222       233


Q ss_pred             CCCCccEEeccccccc-----ccCccccCCCCCCEEEeccCccccccccccccccccceecccccc--------------
Q 039599           89 ISGNITRLYLDETAIE-----EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL--------------  149 (293)
Q Consensus        89 ~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--------------  149 (293)
                      .+.+|++|++++|.+.     .++..+.++++|++|++++|...+ ++..+..+++|++|+++...              
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            4567777777777664     223344566777777777765433 44444555555555554211              


Q ss_pred             ------------cCCCCChhhhccccCCceecCCCcccccCC-CcccccccCceecCCCC---ccccccccCccccceec
Q 039599          150 ------------NLERFPESLEKMEHLNQINLGRTTITEQRP-SSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMG  213 (293)
Q Consensus       150 ------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~  213 (293)
                                  ....++..+..+++|++|++++|.+++... ..+..+++|+.|++..+   ..++.....+++|++|+
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  348 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR  348 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence                        223445556667777777777777543322 22456777777777644   23343445567777777


Q ss_pred             ccC-----------CCccCC--CCc---CCCCccCcccc----------cC-CccccceeecC----CccCCcCC-----
Q 039599          214 AHG-----------SAISQL--PSL---SSGLVPLSASL----------LS-GLSLLYWLHLN----NCALTSIP-----  257 (293)
Q Consensus       214 l~~-----------~~~~~~--~~l---~~~l~~l~~~~----------~~-~~~~L~~L~l~----~n~i~~l~-----  257 (293)
                      +++           +.++..  +.+   .+.++.|++..          ++ .+++|++|+++    .|.+++.|     
T Consensus       349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~  428 (592)
T 3ogk_B          349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV  428 (592)
T ss_dssp             EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred             eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence            773           333321  111   13445544421          11 25566666664    34555432     


Q ss_pred             -cccCCCCCCcEEeccCCc--CCC-CchhHhh-cccCCCC
Q 039599          258 -QEIGYLSSLEWLHLRGNN--LEG-LPASIKQ-ISRLESL  292 (293)
Q Consensus       258 -~~~~~~~~L~~L~l~~n~--l~~-~p~~l~~-l~~L~~l  292 (293)
                       ..+..+++|+.|++++|.  +++ .+..+.. +++|+.|
T Consensus       429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L  468 (592)
T 3ogk_B          429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM  468 (592)
T ss_dssp             HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred             HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence             123456667777776443  443 2223332 5555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=8.2e-17  Score=129.73  Aligned_cols=123  Identities=20%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             ceEEeecCCcCCcccCCCC-CCccEEecccccccccC-ccccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599           72 PVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL  149 (293)
Q Consensus        72 L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  149 (293)
                      -+.++.+++. ++.+|..+ .++++|++++|.+..++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus        21 ~~~v~c~~~~-l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           21 GTTVDCRSKR-HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeEccCCC-cCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            3345555444 44444432 35555555555555442 344555555555555555433222334445555555555554


Q ss_pred             cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599          150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  196 (293)
                      +.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred             CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence            44333333445555555555555553 33444444444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=8.4e-17  Score=128.83  Aligned_cols=148  Identities=18%  Similarity=0.240  Sum_probs=95.9

Q ss_pred             eEEeecCCcCCcccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599           73 VTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN  150 (293)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  150 (293)
                      +.++.+++. ++.+|..+ .++++|++++|.+..+++ .|..+++|++|++++|.+....|..+..+++|++|++++|.+
T Consensus        14 ~~v~c~~~~-l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKG-LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSC-CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCC-cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            355666555 55555543 367777777777776665 566777777777777776665566677777777777777766


Q ss_pred             CCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccC
Q 039599          151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQ  221 (293)
Q Consensus       151 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~  221 (293)
                      ....+..+..+++|++|++++|.+++..+..|..+++|+.|++++|  ..++ ..+..+++|+++++++|++..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            5444445667777777777777776666666666677777777666  3332 345556666666666666544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=2.3e-17  Score=141.98  Aligned_cols=171  Identities=15%  Similarity=0.151  Sum_probs=131.8

Q ss_pred             EEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCC----CCCCccEEecccccccccCc-cccCCCCCCEEEeccC
Q 039599           50 QLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPH----ISGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRC  124 (293)
Q Consensus        50 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~  124 (293)
                      +.++++++. +..+|..+. ..++.|++++|.+....+.    .+.+|++|++++|.+..+++ .|..+++|++|++++|
T Consensus        21 ~~l~c~~~~-l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQ-LPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSC-CSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCC-cCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            467777775 445676442 3799999999985443332    45689999999999998875 6899999999999999


Q ss_pred             ccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcc---cccccCceecCCCC--ccc
Q 039599          125 TRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSF---ENVKGLETLGFSEL--DNL  199 (293)
Q Consensus       125 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~~--~~l  199 (293)
                      .+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..|   ..+++|+.|++++|  ..+
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            8776666678899999999999998887778889999999999999999965433334   56888999999888  444


Q ss_pred             c-ccccCccc--cceecccCCCccCC
Q 039599          200 S-DNIGNFKS--FEYMGAHGSAISQL  222 (293)
Q Consensus       200 ~-~~~~~l~~--L~~L~l~~~~~~~~  222 (293)
                      + ..+..++.  ++.+++++|++...
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             CHHHhhhccHhhcceEEecCCCccCC
Confidence            3 34555555  47788888887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=7.4e-17  Score=129.15  Aligned_cols=128  Identities=16%  Similarity=0.198  Sum_probs=92.3

Q ss_pred             ccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCC
Q 039599           93 ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT  172 (293)
Q Consensus        93 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n  172 (293)
                      -+.++.++++++++|..+.  +++++|++++|.+....+..+..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3678888899998887654  68999999998877655567788888999999888777766788888888888888888


Q ss_pred             cccccCCCcccccccCceecCCCC--c-cccccccCccccceecccCCCccCC
Q 039599          173 TITEQRPSSFENVKGLETLGFSEL--D-NLSDNIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       173 ~~~~~~~~~~~~~~~L~~L~l~~~--~-~l~~~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      .++...+..|..+++|+.|++++|  . ..+..+..+++|++|++++|.+.++
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  143 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI  143 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence            886544444666677777776666  2 2233444555555555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.3e-16  Score=145.74  Aligned_cols=166  Identities=17%  Similarity=0.227  Sum_probs=101.9

Q ss_pred             eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccC-CCCCCccEEecccccccccCccccCCCCCCEEEeccCccc
Q 039599           49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFP-HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRL  127 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  127 (293)
                      |+.|++++|.+ ..++..-.+++|+.|++++|.+....| ..+.+|+.|++++|.+..++ .+..+++|++|++++|.+.
T Consensus        45 L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~  122 (605)
T 1m9s_A           45 IDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS  122 (605)
T ss_dssp             CCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC
T ss_pred             CCEEECcCCCC-CCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC
Confidence            66677766653 333433334477777777776332221 22446777777777776655 4666777777777776654


Q ss_pred             cccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccC
Q 039599          128 KRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGN  205 (293)
Q Consensus       128 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~  205 (293)
                      . + ..+..+++|+.|++++|.+.+.  +.+..+++|++|++++|.+.+..+  +..+++|+.|++++|  ..+ ..+..
T Consensus       123 ~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~  195 (605)
T 1m9s_A          123 D-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAG  195 (605)
T ss_dssp             C-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTT
T ss_pred             C-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHcc
Confidence            4 2 3356667777777777655543  456667777777777777754433  666677777777776  333 34566


Q ss_pred             ccccceecccCCCccCCC
Q 039599          206 FKSFEYMGAHGSAISQLP  223 (293)
Q Consensus       206 l~~L~~L~l~~~~~~~~~  223 (293)
                      +++|+.|++++|.+...|
T Consensus       196 l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          196 LKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CTTCSEEECCSEEEECCC
T ss_pred             CCCCCEEEccCCcCcCCc
Confidence            677777777777666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=1.6e-16  Score=127.12  Aligned_cols=129  Identities=16%  Similarity=0.132  Sum_probs=87.6

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCccccccc-cccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG  170 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  170 (293)
                      .-+.++++++.++.+|..+.  +.+++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        12 ~~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           12 EGTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            34688999999988887653  456899999988766534 346778888888888887666556677888888888888


Q ss_pred             CCcccccCCCcccccccCceecCCCC--cc-ccccccCccccceecccCCCccCC
Q 039599          171 RTTITEQRPSSFENVKGLETLGFSEL--DN-LSDNIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       171 ~n~~~~~~~~~~~~~~~L~~L~l~~~--~~-l~~~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      +|.+++..+..|..+++|++|++++|  .. .+..+..+++|++|++++|.+.++
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence            88886655555666666666666665  22 233444445555555555554444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.68  E-value=2.3e-19  Score=164.23  Aligned_cols=54  Identities=17%  Similarity=0.106  Sum_probs=37.4

Q ss_pred             ccccceeecCCccCCc-CCccc-CCCCCCcEEeccCCcCCC--CchhHhhcccCCCCC
Q 039599          240 LSLLYWLHLNNCALTS-IPQEI-GYLSSLEWLHLRGNNLEG--LPASIKQISRLESLD  293 (293)
Q Consensus       240 ~~~L~~L~l~~n~i~~-l~~~~-~~~~~L~~L~l~~n~l~~--~p~~l~~l~~L~~ld  293 (293)
                      +++|++|++++|.+++ .+..+ ..+++|+.|++++|.+++  ++..+..+++|+.|+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  512 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW  512 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence            6778888888888766 22223 568889999999998864  333444577777653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=6.2e-16  Score=124.55  Aligned_cols=151  Identities=17%  Similarity=0.127  Sum_probs=103.2

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      .-+.++.++++++.+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            46678888888888887554  7899999999888776677788888899999988877554456678888888888888


Q ss_pred             CcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecC
Q 039599          172 TTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLN  249 (293)
Q Consensus       172 n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~  249 (293)
                      |.+++..+..|..+++|+.|++++|  ..+|..+..+++|++|++++|.+..+|.-          .+..+++|+.|+++
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~l~  167 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG----------AFDRLSSLTHAYLF  167 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTT----------TTTTCTTCCEEECT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHH----------HHhCCCCCCEEEee
Confidence            8887655555666777777776666  44455555555555555555555544220          13344455555555


Q ss_pred             CccCC
Q 039599          250 NCALT  254 (293)
Q Consensus       250 ~n~i~  254 (293)
                      +|.+.
T Consensus       168 ~N~~~  172 (229)
T 3e6j_A          168 GNPWD  172 (229)
T ss_dssp             TSCBC
T ss_pred             CCCcc
Confidence            55444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=2.6e-17  Score=135.42  Aligned_cols=169  Identities=15%  Similarity=0.226  Sum_probs=141.6

Q ss_pred             CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599           91 GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG  170 (293)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  170 (293)
                      .++..++++++.+..++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|+++
T Consensus        19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECC
T ss_pred             HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECC
Confidence            35667788999988877 57889999999999997654 44 688999999999999976654 44 8999999999999


Q ss_pred             CCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeec
Q 039599          171 RTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL  248 (293)
Q Consensus       171 ~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l  248 (293)
                      +|.+++ ++.. .. ++|+.|++++|  ..++ .+..+++|++|++++|.+++++.            ++.+++|++|++
T Consensus        94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~------------l~~l~~L~~L~L  157 (263)
T 1xeu_A           94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVM------------LGFLSKLEVLDL  157 (263)
T ss_dssp             SSCCSC-CTTC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGG------------GGGCTTCCEEEC
T ss_pred             CCccCC-cCcc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChH------------HccCCCCCEEEC
Confidence            999965 4433 23 89999999999  4443 68899999999999999988754            568899999999


Q ss_pred             CCccCCcCCcccCCCCCCcEEeccCCcCCCCch
Q 039599          249 NNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPA  281 (293)
Q Consensus       249 ~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~  281 (293)
                      ++|.++++ ..+..+++|+.|++++|+++..|.
T Consensus       158 ~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          158 HGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             TTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             CCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence            99999988 568899999999999999987553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=2.1e-16  Score=121.08  Aligned_cols=137  Identities=18%  Similarity=0.256  Sum_probs=83.4

Q ss_pred             CCCCEEEeccCccc-cccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceec
Q 039599          114 TNLKLLRINRCTRL-KRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLG  192 (293)
Q Consensus       114 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  192 (293)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|             
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-------------   88 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-------------   88 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-------------
Confidence            45666666665544 34444445555555555555543332  344555555555555555543333             


Q ss_pred             CCCCccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc----ccCCCCCCcE
Q 039599          193 FSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ----EIGYLSSLEW  268 (293)
Q Consensus       193 l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~----~~~~~~~L~~  268 (293)
                              ..+..+++|++|++++|.+.++|.+         ..+..+++|++|++++|.++++|.    .+..+++|+.
T Consensus        89 --------~~~~~l~~L~~L~Ls~N~l~~~~~~---------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           89 --------MLAEKLPNLTHLNLSGNKLKDISTL---------EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             --------HHHHHCTTCCEEECBSSSCCSSGGG---------GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             --------HHHhhCCCCCEEeccCCccCcchhH---------HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence                    3333455566666666666665320         025677888888888888888765    6788888999


Q ss_pred             EeccCCcCCCCchh
Q 039599          269 LHLRGNNLEGLPAS  282 (293)
Q Consensus       269 L~l~~n~l~~~p~~  282 (293)
                      |++++|.+..+|+.
T Consensus       152 L~l~~n~~~~~~~~  165 (168)
T 2ell_A          152 LDGYDREDQEAPDS  165 (168)
T ss_dssp             ETTEETTSCBCCSS
T ss_pred             ecCCCCChhhcccc
Confidence            99988888877653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.7e-15  Score=115.96  Aligned_cols=104  Identities=16%  Similarity=0.233  Sum_probs=76.6

Q ss_pred             CCccEEeccccccc--ccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCcee
Q 039599           91 GNITRLYLDETAIE--EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQIN  168 (293)
Q Consensus        91 ~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  168 (293)
                      .++++|++++|.+.  .+|..+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            46777777777776  7777777888888888888876554  5677888888888888877776777777788888998


Q ss_pred             cCCCcccccCC-CcccccccCceecCCCC
Q 039599          169 LGRTTITEQRP-SSFENVKGLETLGFSEL  196 (293)
Q Consensus       169 l~~n~~~~~~~-~~~~~~~~L~~L~l~~~  196 (293)
                      +++|.+++... ..+..+++|+.|++++|
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            88888854311 34555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.63  E-value=2.4e-18  Score=157.49  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=32.8

Q ss_pred             CCccccceeecCCccCCc--CCcccCCCCCCcEEeccCCcCC
Q 039599          238 SGLSLLYWLHLNNCALTS--IPQEIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       238 ~~~~~L~~L~l~~n~i~~--l~~~~~~~~~L~~L~l~~n~l~  277 (293)
                      .++++|++|++++|.+++  +...+..+++|+.|++++|+++
T Consensus       478 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            467899999999999866  3334566899999999999985

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=2.7e-16  Score=146.82  Aligned_cols=129  Identities=16%  Similarity=0.073  Sum_probs=85.9

Q ss_pred             CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599           91 GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG  170 (293)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  170 (293)
                      ..|+.|++++|.+..+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF  301 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred             CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence            4677777777777777776667777777777777655 56666777777777777777655 667777777777777777


Q ss_pred             CCcccccCCCcccccccCceecCCCC---ccccccccCcc-ccceecccCCCccCC
Q 039599          171 RTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFK-SFEYMGAHGSAISQL  222 (293)
Q Consensus       171 ~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~-~L~~L~l~~~~~~~~  222 (293)
                      +|.+. .+|..|..+++|+.|++++|   +..+..+.... ....+++.+|.+.+.
T Consensus       302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~  356 (727)
T 4b8c_D          302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP  356 (727)
T ss_dssp             SSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             CCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence            77774 56666777777777777777   33444443322 122356666766554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=3.6e-15  Score=116.71  Aligned_cols=123  Identities=20%  Similarity=0.216  Sum_probs=77.0

Q ss_pred             eEEeecCCcCCcccCCCCC-CccEEecccccccccCcc--ccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599           73 VTIDFTSCINLTDFPHISG-NITRLYLDETAIEEVPSS--IKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL  149 (293)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  149 (293)
                      ++++++++. ++.+|..+. ++++|++++|.+..+++.  +..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus        11 ~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            456666665 455555432 666667766666666542  5666677777777766665555666666666666666666


Q ss_pred             cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599          150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  196 (293)
                      +.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            65555555666666666666666666555555656666666666555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=8.1e-15  Score=114.78  Aligned_cols=123  Identities=17%  Similarity=0.233  Sum_probs=99.3

Q ss_pred             eEEeecCCcCCcccCCCC-CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccC
Q 039599           73 VTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL  151 (293)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  151 (293)
                      +.++++++. ++.+|..+ .++++|++++|.+..+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus        13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            467777776 66677644 4788999999999888888888999999999998877766677888889999999998877


Q ss_pred             CCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599          152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       152 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  196 (293)
                      +..+..|..+++|++|++++|.++...+..|..+++|+.|++++|
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            777777888889999999999887655556777888888888776

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=9.3e-16  Score=115.02  Aligned_cols=123  Identities=15%  Similarity=0.187  Sum_probs=72.1

Q ss_pred             ccccceecccccccC-CCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCccccccccCccccceeccc
Q 039599          137 LKSLIALSAYGCLNL-ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAH  215 (293)
Q Consensus       137 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~  215 (293)
                      .+++++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+                     ..+++|++|+++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~---------------------~~l~~L~~L~Ls   72 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL---------------------PKLNKLKKLELS   72 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC---------------------CCCTTCCEEECC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh---------------------hcCCCCCEEECC
Confidence            345666666666554 45555555566666666666655433  333                     444555555555


Q ss_pred             CCCccC-CCCcCCCCccCcccccCCccccceeecCCccCCcCC--cccCCCCCCcEEeccCCcCCCCch----hHhhccc
Q 039599          216 GSAISQ-LPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP--QEIGYLSSLEWLHLRGNNLEGLPA----SIKQISR  288 (293)
Q Consensus       216 ~~~~~~-~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~l~~~p~----~l~~l~~  288 (293)
                      +|.+.+ +|.           .+..+++|++|++++|.+++++  ..+..+++|+.|++++|+++++|+    .+..+++
T Consensus        73 ~n~i~~~~~~-----------~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  141 (149)
T 2je0_A           73 DNRVSGGLEV-----------LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ  141 (149)
T ss_dssp             SSCCCSCTHH-----------HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred             CCcccchHHH-----------HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence            555555 233           1334566777777777776643  556667777777777777776554    5666677


Q ss_pred             CCCCC
Q 039599          289 LESLD  293 (293)
Q Consensus       289 L~~ld  293 (293)
                      |+.||
T Consensus       142 L~~L~  146 (149)
T 2je0_A          142 LTYLD  146 (149)
T ss_dssp             CCEET
T ss_pred             ccccc
Confidence            76654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=3.1e-17  Score=148.90  Aligned_cols=168  Identities=17%  Similarity=0.166  Sum_probs=137.3

Q ss_pred             cCCCCCCEEEeccCccccccccccccccccceecccccc-------------cCCCCChhhhccccCCcee-cCCCcccc
Q 039599          111 KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL-------------NLERFPESLEKMEHLNQIN-LGRTTITE  176 (293)
Q Consensus       111 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~n~~~~  176 (293)
                      ..+++|+.|++++|.+ ..+|..++.+++|+.|+++.|.             ..+..|+.++.+++|+.|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            5678999999999875 4689999999999999987764             3456677888899999998 55554321


Q ss_pred             cCCC------cccc--cccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCcccccee
Q 039599          177 QRPS------SFEN--VKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWL  246 (293)
Q Consensus       177 ~~~~------~~~~--~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L  246 (293)
                       ++.      .+..  ...|+.|++++|  ..+|. +..+++|+.|++++|.+..+|.           .++.+++|+.|
T Consensus       425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-----------~~~~l~~L~~L  491 (567)
T 1dce_A          425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-----------ALAALRCLEVL  491 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-----------GGGGCTTCCEE
T ss_pred             -hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-----------hhhcCCCCCEE
Confidence             111      1111  236899999999  66776 8999999999999999998876           36788999999


Q ss_pred             ecCCccCCcCCcccCCCCCCcEEeccCCcCCCC--chhHhhcccCCCCC
Q 039599          247 HLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGL--PASIKQISRLESLD  293 (293)
Q Consensus       247 ~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~--p~~l~~l~~L~~ld  293 (293)
                      ++++|.|+++| .++.+++|+.|++++|+++++  |..+..+++|+.||
T Consensus       492 ~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          492 QASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             ECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             ECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence            99999999998 799999999999999999996  89999999998764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=1.5e-14  Score=113.18  Aligned_cols=129  Identities=17%  Similarity=0.195  Sum_probs=111.1

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCcccccccc-ccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVST-SICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG  170 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  170 (293)
                      .-+.+++++++++++|..+..  ++++|++++|.+....+. .+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus         9 ~~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A            9 EGTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            347899999999999986643  899999999987665443 47899999999999998888888899999999999999


Q ss_pred             CCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCccCC
Q 039599          171 RTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       171 ~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      +|.+++..+..|..+++|+.|++++|   +..+..+..+++|+++++++|.+...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            99998887778889999999999998   34467788899999999999988765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=5.1e-16  Score=144.93  Aligned_cols=184  Identities=14%  Similarity=0.157  Sum_probs=111.0

Q ss_pred             cCceEEeecCCcCCcccCCCCC---C-----ccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccc
Q 039599           70 VSPVTIDFTSCINLTDFPHISG---N-----ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLI  141 (293)
Q Consensus        70 ~~L~~L~l~~~~~~~~~~~~~~---~-----L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  141 (293)
                      +.++.|++.++... ..+....   +     +..+++..|.+...+..+..++.|+.|++++|.+. .+|..+..+++|+
T Consensus       173 ~~~~~l~L~~n~~~-~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~  250 (727)
T 4b8c_D          173 PLTPKIELFANGKD-EANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred             CccceEEeeCCCCC-cchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence            36778888777633 3332221   2     22233334444545667889999999999998866 6777778999999


Q ss_pred             eecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCc
Q 039599          142 ALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAI  219 (293)
Q Consensus       142 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~  219 (293)
                      +|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|  ..+|..+..+++|++|++++|.+
T Consensus       251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             EEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence            9999999776 88888999999999999999997 67889999999999999999  77888899999999999999999


Q ss_pred             cCC-CCcCCCCccCcccccCCc-cccceeecCCccCCc-CCcccCCCCCCcEEeccCC
Q 039599          220 SQL-PSLSSGLVPLSASLLSGL-SLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGN  274 (293)
Q Consensus       220 ~~~-~~l~~~l~~l~~~~~~~~-~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n  274 (293)
                      .+. |..           +... .....+++++|.++. +|.      .|+.|++++|
T Consensus       329 ~~~~p~~-----------~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          329 EKQFLKI-----------LTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             CSHHHHH-----------HHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             CCCChHH-----------HhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            876 431           1111 112347788888876 554      4556667666

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=3.4e-17  Score=128.96  Aligned_cols=84  Identities=24%  Similarity=0.215  Sum_probs=39.7

Q ss_pred             ccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccc
Q 039599          133 SICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFE  210 (293)
Q Consensus       133 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~  210 (293)
                      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|+.|++++|  ..++ .+..+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence            44555555555555554433 33 4555555555555555553 33444444445555555444  2222 233444444


Q ss_pred             eecccCCCcc
Q 039599          211 YMGAHGSAIS  220 (293)
Q Consensus       211 ~L~l~~~~~~  220 (293)
                      +|++++|.+.
T Consensus       119 ~L~l~~N~i~  128 (198)
T 1ds9_A          119 VLYMSNNKIT  128 (198)
T ss_dssp             EEEESEEECC
T ss_pred             EEECCCCcCC
Confidence            4444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=7.4e-15  Score=110.05  Aligned_cols=122  Identities=16%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             CceEEeecCCcCC-cccCCC---CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccc
Q 039599           71 SPVTIDFTSCINL-TDFPHI---SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAY  146 (293)
Q Consensus        71 ~L~~L~l~~~~~~-~~~~~~---~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  146 (293)
                      +++.|++++|.+. +.+|..   +.+|++|++++|.+..+ ..+..+++|++|++++|.+....|..+..+++|++|+++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            5556666665533 244432   23455555555555444 444555555555555555444344444445555555555


Q ss_pred             ccccCCC-CChhhhccccCCceecCCCcccccCC---CcccccccCceecC
Q 039599          147 GCLNLER-FPESLEKMEHLNQINLGRTTITEQRP---SSFENVKGLETLGF  193 (293)
Q Consensus       147 ~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l  193 (293)
                      +|.+.+. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++
T Consensus        97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            5543331 12344555555555555555543322   23444455555444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=1.9e-14  Score=110.98  Aligned_cols=133  Identities=14%  Similarity=0.137  Sum_probs=101.7

Q ss_pred             ccccccccceecccccccCCCCChhhhccc-cCCceecCCCcccccCCCcccccccCceecCCCC--cccccc-ccCccc
Q 039599          133 SICKLKSLIALSAYGCLNLERFPESLEKME-HLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDN-IGNFKS  208 (293)
Q Consensus       133 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~-~~~l~~  208 (293)
                      .+..+.+|++|++++|.+. .++. +..+. +|++|++++|.+++.  ..+..+++|++|++++|  ..++.. +..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3557788999999998766 4454 44444 899999999999764  56788889999999988  455544 477888


Q ss_pred             cceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcc----cCCCCCCcEEeccCCcCCC
Q 039599          209 FEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE----IGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       209 L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~----~~~~~~L~~L~l~~n~l~~  278 (293)
                      |++|++++|.+..+|.+.         .+..+++|++|++++|.++.+|..    +..+++|+.||+++|....
T Consensus        90 L~~L~L~~N~i~~~~~~~---------~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLD---------PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCEEECCSCCCCCGGGGG---------GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCEEECCCCcCCcchhhH---------hhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999998887765311         256778888999999988887764    7788889999988887653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=2.2e-13  Score=105.04  Aligned_cols=123  Identities=19%  Similarity=0.195  Sum_probs=67.9

Q ss_pred             eEEeecCCcCCcccCCC-CCCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599           73 VTIDFTSCINLTDFPHI-SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN  150 (293)
Q Consensus        73 ~~L~l~~~~~~~~~~~~-~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  150 (293)
                      +.++++++. ++.+|.. ..++++|++++|.+..++. .+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        10 ~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            345555554 3444432 2356666666666665554 345666666666666655443334455666666666666655


Q ss_pred             CCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599          151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       151 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  196 (293)
                      .+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            5444444556666666666666665433333445555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=1.7e-13  Score=107.22  Aligned_cols=127  Identities=13%  Similarity=0.159  Sum_probs=102.9

Q ss_pred             ccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCC
Q 039599           93 ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT  172 (293)
Q Consensus        93 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n  172 (293)
                      -+.++++++++.++|..+.  +++++|++++|.+. .+|..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            3678999999999997653  68999999998765 56778889999999999999887777778899999999999999


Q ss_pred             cccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCCccCC
Q 039599          173 TITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       173 ~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      .+++..+..|..+++|+.|++++|  ..++. .+..+++|+.+++++|.+...
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            998777777888888888888888  44444 466777888888887776543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=3.9e-13  Score=103.63  Aligned_cols=128  Identities=15%  Similarity=0.166  Sum_probs=87.5

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      ..+.++++++++..+|..+  .++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus         8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4577888888888888654  36889999998887654455567788888888888877655556677888888888888


Q ss_pred             CcccccCCCcccccccCceecCCCC--cccccc-ccCccccceecccCCCccC
Q 039599          172 TTITEQRPSSFENVKGLETLGFSEL--DNLSDN-IGNFKSFEYMGAHGSAISQ  221 (293)
Q Consensus       172 n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~-~~~l~~L~~L~l~~~~~~~  221 (293)
                      |.+++..+..+..+++|+.|++++|  ..++.. +..+++|+++++++|.+..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            8886555555666666776666665  333322 3445555555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.7e-13  Score=105.62  Aligned_cols=125  Identities=14%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             CCcCceEEeecCCcCCcccCCC---CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceec
Q 039599           68 HFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALS  144 (293)
Q Consensus        68 ~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  144 (293)
                      .+.+|+.|++++|.+ +.+|..   ..+|++|++++|.+..+ +.+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        17 ~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           17 NAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             CTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            344777777777763 344432   12677777777777666 4566677777777777765543223336677777777


Q ss_pred             ccccccCCCCCh--hhhccccCCceecCCCcccccCCCc----ccccccCceecCCCC
Q 039599          145 AYGCLNLERFPE--SLEKMEHLNQINLGRTTITEQRPSS----FENVKGLETLGFSEL  196 (293)
Q Consensus       145 l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~~  196 (293)
                      +++|.+ +.+|.  .+..+++|++|++++|.++ ..+..    +..+++|+.|+++++
T Consensus        95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence            777655 33443  5666677777777777764 33432    555666666666655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.43  E-value=5.4e-13  Score=113.20  Aligned_cols=96  Identities=15%  Similarity=0.157  Sum_probs=58.6

Q ss_pred             cccCceecCCCC--ccccc-cccCccccceecccCCCccCCCCcCCCCccCcccccCCccccc-eeecCCccCCcCC-cc
Q 039599          185 VKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLY-WLHLNNCALTSIP-QE  259 (293)
Q Consensus       185 ~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~-~L~l~~n~i~~l~-~~  259 (293)
                      +++|+.+++.+|  ..++. .+..+++|+.+++.++ +..++.          ..|.++.+|+ .+++.+ .++.++ .+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~----------~aF~~~~~L~~~l~l~~-~l~~I~~~a  292 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ----------RVFSNCGRLAGTLELPA-SVTAIEFGA  292 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT----------TTTTTCTTCCEEEEECT-TCCEECTTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH----------HHhhCChhccEEEEEcc-cceEEchhh
Confidence            556666666664  33332 4555666666666655 444422          1256777777 777776 566643 45


Q ss_pred             cCCCCCCcEEeccCCcCCCCc-hhHhhcccCCCC
Q 039599          260 IGYLSSLEWLHLRGNNLEGLP-ASIKQISRLESL  292 (293)
Q Consensus       260 ~~~~~~L~~L~l~~n~l~~~p-~~l~~l~~L~~l  292 (293)
                      |.+|++|+.++++.|.++.++ ..|..+++|+.+
T Consensus       293 F~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          293 FMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             TTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             hhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            677777777777777777644 356667777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.41  E-value=5.1e-13  Score=113.36  Aligned_cols=230  Identities=12%  Similarity=0.113  Sum_probs=155.1

Q ss_pred             CccccEEEEeccceeee----c--ccceEEEeccCCccc--ccCCCCCCCcCceEEeecCCcCCcccCCC--------CC
Q 039599           28 MSNLRVLKFYIPEISVH----M--SIEEQLLDSKGCKIL--RSFPSNLHFVSPVTIDFTSCINLTDFPHI--------SG   91 (293)
Q Consensus        28 ~~~L~~L~l~~~~~~~~----~--~~~l~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------~~   91 (293)
                      +.+++.|.++++-...+    .  .-.|+.|++++|.+.  ......+  +.+..+.+..+.+....-..        +.
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~--~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~  101 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY--PNGKFYIYMANFVPAYAFSNVVNGVTKGKQ  101 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS--GGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccc--cccccccccccccCHHHhcccccccccccC
Confidence            45788888887421111    1  123888888888765  2111111  12334444444322211123        56


Q ss_pred             CccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccccc-----------------CC-
Q 039599           92 NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN-----------------LE-  152 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-----------------~~-  152 (293)
                      +|+++++.+ .+..+++ +|.+|++|+.+++++|.+....+..+..+.++..+.......                 .. 
T Consensus       102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~  180 (329)
T 3sb4_A          102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET  180 (329)
T ss_dssp             TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred             CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence            889999988 8888876 789999999999999877665566677777777776554211                 00 


Q ss_pred             --------CCCh---------------------------hh-hccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599          153 --------RFPE---------------------------SL-EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       153 --------~~~~---------------------------~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  196 (293)
                              .++.                           .+ ..+++|+++++.+|.++......|..+++|+.+++..+
T Consensus       181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred             eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence                    0000                           00 13789999999999997777778999999999999988


Q ss_pred             -ccc-cccccCccccc-eecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEec
Q 039599          197 -DNL-SDNIGNFKSFE-YMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHL  271 (293)
Q Consensus       197 -~~l-~~~~~~l~~L~-~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l  271 (293)
                       ..+ ...|..+++|+ .+.+.. .+..++.          ..|.+|++|+.+++++|.++.++. +|.++++|+.+..
T Consensus       261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~----------~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF----------GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEEEECT-TCCEECT----------TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cceehHHHhhCChhccEEEEEcc-cceEEch----------hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence             444 34677899999 999887 5555532          147899999999999999998664 7889999998863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=1.3e-15  Score=119.92  Aligned_cols=88  Identities=19%  Similarity=0.196  Sum_probs=49.0

Q ss_pred             cccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCccc
Q 039599          104 EEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFE  183 (293)
Q Consensus       104 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  183 (293)
                      ..+|..+..+++|++|++++|.+.. +| .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++ ++ .+.
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~  112 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIE  112 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred             hhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence            3444455566666666666655443 34 4555666666666665443 445555555666666666666543 22 355


Q ss_pred             ccccCceecCCCC
Q 039599          184 NVKGLETLGFSEL  196 (293)
Q Consensus       184 ~~~~L~~L~l~~~  196 (293)
                      .+++|+.|++++|
T Consensus       113 ~l~~L~~L~l~~N  125 (198)
T 1ds9_A          113 KLVNLRVLYMSNN  125 (198)
T ss_dssp             HHHHSSEEEESEE
T ss_pred             cCCCCCEEECCCC
Confidence            5566666666655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=4e-12  Score=97.26  Aligned_cols=103  Identities=19%  Similarity=0.153  Sum_probs=60.9

Q ss_pred             ceEEeecCCcCCcccCCCC-CCccEEecccccccccC-ccccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599           72 PVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL  149 (293)
Q Consensus        72 L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  149 (293)
                      .+.++++++. ++.+|..+ .++++|++++|.+..++ ..|.++++|++|++++|.+....+..+..+++|++|++++|.
T Consensus        11 ~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           11 GTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            4566666665 44555433 35666666666666553 345666666666666666554334445566666666666665


Q ss_pred             cCCCCChhhhccccCCceecCCCccc
Q 039599          150 NLERFPESLEKMEHLNQINLGRTTIT  175 (293)
Q Consensus       150 ~~~~~~~~~~~l~~L~~L~l~~n~~~  175 (293)
                      +.+..+..+..+++|++|++++|.+.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            55444445666666666666666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=8.4e-12  Score=95.48  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=86.2

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      ..+.++++++++..+|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            45788999999988887663  7889999999888777677788899999999999977766666678899999999999


Q ss_pred             CcccccCCCcccccccCceecCCCC
Q 039599          172 TTITEQRPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       172 n~~~~~~~~~~~~~~~L~~L~l~~~  196 (293)
                      |.+++..+..|..+++|+.|++++|
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCC
Confidence            9997666666888899999999988

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=7.6e-12  Score=96.07  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=57.5

Q ss_pred             eEEeecCCcCCcccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599           73 VTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN  150 (293)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  150 (293)
                      +.++++++. ++.+|..+ .++++|++++|.+..+++ .|.++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            456666665 45555433 356666666666665533 556666666666666655443333345566666666666655


Q ss_pred             CCCCChhhhccccCCceecCCCcc
Q 039599          151 LERFPESLEKMEHLNQINLGRTTI  174 (293)
Q Consensus       151 ~~~~~~~~~~l~~L~~L~l~~n~~  174 (293)
                      .+..+..+..+++|++|++++|.+
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ceeCHHHhccccCCCEEEeCCCCc
Confidence            443333455666666666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=2e-11  Score=93.68  Aligned_cols=103  Identities=18%  Similarity=0.186  Sum_probs=83.5

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      .-+.+++++++++.+|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            34678888898888887664  7889999999887776677788889999999999877665555678889999999999


Q ss_pred             CcccccCCCcccccccCceecCCCC
Q 039599          172 TTITEQRPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       172 n~~~~~~~~~~~~~~~L~~L~l~~~  196 (293)
                      |.+.+..+..|..+++|+.|++++|
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             CccceeCHHHhccccCCCEEEeCCC
Confidence            9887555555888889999999888

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.28  E-value=2.1e-10  Score=99.63  Aligned_cols=140  Identities=14%  Similarity=0.139  Sum_probs=57.5

Q ss_pred             cCceEEeecCCcCCcccCCCC---CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecc
Q 039599           70 VSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSA  145 (293)
Q Consensus        70 ~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  145 (293)
                      .+|+.+++.++. ++.++...   .+|+++.+..+ +..++. +|.++++|+.+.+..+ +...-...+.+ .+|+.+.+
T Consensus       180 ~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l  255 (401)
T 4fdw_A          180 YNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL  255 (401)
T ss_dssp             TTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred             ccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence            355555555444 33333221   24444444422 333333 4445555555555442 11111222322 44555554


Q ss_pred             cccccCCCCChhhhccccCCceecCCCccc-----ccCCCcccccccCceecCCCC-ccc-cccccCccccceecc
Q 039599          146 YGCLNLERFPESLEKMEHLNQINLGRTTIT-----EQRPSSFENVKGLETLGFSEL-DNL-SDNIGNFKSFEYMGA  214 (293)
Q Consensus       146 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~~-~~l-~~~~~~l~~L~~L~l  214 (293)
                      ..+ ....-...|..+++|+.+.+.++.+.     ......|..+++|+.+.+..+ ..+ ...+..+++|+.+.+
T Consensus       256 p~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          256 PNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             ETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEE
T ss_pred             CCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEE
Confidence            321 22222334555555555555544332     122334445555555555433 222 223344445555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=2.6e-13  Score=116.94  Aligned_cols=157  Identities=11%  Similarity=0.085  Sum_probs=82.3

Q ss_pred             CCccEEecccccccccC-----cccc-CCCCCCEEEeccCcccccccccc-ccccccceecccccccCCCCChhh-----
Q 039599           91 GNITRLYLDETAIEEVP-----SSIK-CLTNLKLLRINRCTRLKRVSTSI-CKLKSLIALSAYGCLNLERFPESL-----  158 (293)
Q Consensus        91 ~~L~~L~l~~~~~~~l~-----~~~~-~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~-----  158 (293)
                      ..+++|++++|.++...     ..+. ..++|++|++++|.+.......+ ..+++|++|++++|.+.......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45777777777765321     1222 22567777777776544322222 235567777777775543222222     


Q ss_pred             hccccCCceecCCCcccccC----CCcccccccCceecCCCC-------ccccccccCccccceecccCCCccCCC--Cc
Q 039599          159 EKMEHLNQINLGRTTITEQR----PSSFENVKGLETLGFSEL-------DNLSDNIGNFKSFEYMGAHGSAISQLP--SL  225 (293)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~-------~~l~~~~~~l~~L~~L~l~~~~~~~~~--~l  225 (293)
                      ...++|++|++++|.+++..    +..+...++|++|++++|       ..+...+...++|++|++++|.++...  .+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            13456777777777664322    222344566667776666       122344455556666666666655431  01


Q ss_pred             CCCCccCcccccCCccccceeecCCccCCc
Q 039599          226 SSGLVPLSASLLSGLSLLYWLHLNNCALTS  255 (293)
Q Consensus       226 ~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~  255 (293)
                      ..        .+...++|++|++++|.|++
T Consensus       232 ~~--------~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          232 AR--------AAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HH--------HHHHCSSCCEEECTTSSCCH
T ss_pred             HH--------HHHhCCCCCEEeccCCCCCH
Confidence            00        12233556666666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.16  E-value=1.2e-09  Score=95.01  Aligned_cols=171  Identities=13%  Similarity=0.124  Sum_probs=93.8

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      +|+.+++.+|.+..++.....+.+|+.+.+..+ +.......+.++++|+.+.+..+ +...-..+|.. .+|+.+.+. 
T Consensus       181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-  256 (401)
T 4fdw_A          181 NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-  256 (401)
T ss_dssp             TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-
T ss_pred             cCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-
Confidence            455555655555555542222455566655532 22222344555556666666543 22111233433 456666663 


Q ss_pred             CcccccCCCcccccccCceecCCCC--c-----cc-cccccCccccceecccCCCccCCCCcCCCCccCcccccCCcccc
Q 039599          172 TTITEQRPSSFENVKGLETLGFSEL--D-----NL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLL  243 (293)
Q Consensus       172 n~~~~~~~~~~~~~~~L~~L~l~~~--~-----~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L  243 (293)
                      +.++......|..+++|+.+.+.++  .     .+ ...+..+++|+.+.+.. .+..++          -..|.+|.+|
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~----------~~aF~~c~~L  325 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG----------QGLLGGNRKV  325 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC----------TTTTTTCCSC
T ss_pred             CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh----------hhhhcCCCCc
Confidence            3343444455666666666666554  1     12 23455666666666652 233332          2247788888


Q ss_pred             ceeecCCccCCcCC-cccCCCCCCcEEeccCCcCCCC
Q 039599          244 YWLHLNNCALTSIP-QEIGYLSSLEWLHLRGNNLEGL  279 (293)
Q Consensus       244 ~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~~  279 (293)
                      +.+.+..+ ++.+. .+|..+ +|+.+++++|.+..+
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred             cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence            88888654 66643 467778 899999988877653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.08  E-value=1.1e-11  Score=106.81  Aligned_cols=132  Identities=10%  Similarity=0.082  Sum_probs=66.9

Q ss_pred             CCccEEeccccccccc--CccccCCCCCCEEEeccCccccccccccc-----cccccceecccccccCC----CCChhhh
Q 039599           91 GNITRLYLDETAIEEV--PSSIKCLTNLKLLRINRCTRLKRVSTSIC-----KLKSLIALSAYGCLNLE----RFPESLE  159 (293)
Q Consensus        91 ~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~----~~~~~~~  159 (293)
                      .+|++|++++|.++..  ......+++|++|++++|.+.......++     ..++|++|++++|.+..    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            3555555555555311  11112334556666666654433222221     23556666666664432    2333345


Q ss_pred             ccccCCceecCCCcccccC----CCcccccccCceecCCCC-------ccccccccCccccceecccCCCccCC
Q 039599          160 KMEHLNQINLGRTTITEQR----PSSFENVKGLETLGFSEL-------DNLSDNIGNFKSFEYMGAHGSAISQL  222 (293)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~-------~~l~~~~~~l~~L~~L~l~~~~~~~~  222 (293)
                      .+++|++|++++|.+.+..    +..+...++|+.|++++|       ..+...+...+.|++|++++|.++..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            5566666666666654322    233444556666666666       12333444556677777777766543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=4e-10  Score=96.07  Aligned_cols=100  Identities=15%  Similarity=0.135  Sum_probs=68.4

Q ss_pred             EEeecCCcCCcccCCCCC---CccEEeccc-ccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599           74 TIDFTSCINLTDFPHISG---NITRLYLDE-TAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC  148 (293)
Q Consensus        74 ~L~l~~~~~~~~~~~~~~---~L~~L~l~~-~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  148 (293)
                      .++.+++..++.+|. +.   +|++|+|++ |.+..+++ .|.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            346666522556766 43   477778875 77777764 5777888888888887776666666777788888888887


Q ss_pred             ccCCCCChhhhccccCCceecCCCccc
Q 039599          149 LNLERFPESLEKMEHLNQINLGRTTIT  175 (293)
Q Consensus       149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~  175 (293)
                      .+.+..+..+..++ |++|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            66654444455454 788888877774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.86  E-value=5.1e-09  Score=89.18  Aligned_cols=101  Identities=16%  Similarity=0.109  Sum_probs=86.7

Q ss_pred             cEEecccc-cccccCccccCCCCCCEEEecc-CccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           94 TRLYLDET-AIEEVPSSIKCLTNLKLLRINR-CTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        94 ~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      ..++.+++ ++..+|. +..+++|++|++++ |.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            45788888 8999999 99999999999996 877766667899999999999999988888888899999999999999


Q ss_pred             CcccccCCCcccccccCceecCCCC
Q 039599          172 TTITEQRPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       172 n~~~~~~~~~~~~~~~L~~L~l~~~  196 (293)
                      |.+++..+..|..++ |+.|++.+|
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSS
T ss_pred             CccceeCHHHcccCC-ceEEEeeCC
Confidence            999765555555555 999999988

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.73  E-value=5.8e-07  Score=77.85  Aligned_cols=41  Identities=7%  Similarity=0.255  Sum_probs=25.6

Q ss_pred             cceeechhhccCCccccEEEEecccee-e-eccc----ceEEEeccCC
Q 039599           16 KGINLNLRAFSNMSNLRVLKFYIPEIS-V-HMSI----EEQLLDSKGC   57 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~-~~~~----~l~~L~l~~~   57 (293)
                      ....++..+|..+++|+.+.+..+ +. . ..++    .|+.+++.++
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~  104 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS  104 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC
Confidence            456677788888888888888543 22 1 1111    1777777543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.71  E-value=1.9e-09  Score=92.21  Aligned_cols=38  Identities=18%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             ccccceeecCCccCCc-----CCcccCCCCCCcEEeccCCcCC
Q 039599          240 LSLLYWLHLNNCALTS-----IPQEIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       240 ~~~L~~L~l~~n~i~~-----l~~~~~~~~~L~~L~l~~n~l~  277 (293)
                      +++|++|+++.|.+++     ++..+..+++|+.|++++|.++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4556666666665554     2222234556666666666555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.61  E-value=1.5e-08  Score=86.64  Aligned_cols=81  Identities=12%  Similarity=0.204  Sum_probs=42.5

Q ss_pred             cccCceecCCCCc---ccccc---ccCccccceecccCCCccCC-CC-cCCCCccCcccccCCccccceeecCCccCCc-
Q 039599          185 VKGLETLGFSELD---NLSDN---IGNFKSFEYMGAHGSAISQL-PS-LSSGLVPLSASLLSGLSLLYWLHLNNCALTS-  255 (293)
Q Consensus       185 ~~~L~~L~l~~~~---~l~~~---~~~l~~L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-  255 (293)
                      +++|+.|.+..|+   .....   ...++.|++|+++.|.+.+. +. +..        .+..+++|++|++++|.|++ 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~--------~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD--------HVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT--------THHHHTTCSEEECCSBBCCHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh--------hcccCCcceEEECCCCcCCHH
Confidence            4566666665551   11111   12466777777777766553 11 110        12345778888888887775 


Q ss_pred             CCcccCC-CCCCcEEeccCCc
Q 039599          256 IPQEIGY-LSSLEWLHLRGNN  275 (293)
Q Consensus       256 l~~~~~~-~~~L~~L~l~~n~  275 (293)
                      .-..+.. +  ...++++.++
T Consensus       323 ~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          323 MKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHHc--CCEEEecCCc
Confidence            2122221 2  3456777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.58  E-value=1.5e-06  Score=75.30  Aligned_cols=162  Identities=12%  Similarity=0.095  Sum_probs=89.2

Q ss_pred             CCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCcee
Q 039599          112 CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETL  191 (293)
Q Consensus       112 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  191 (293)
                      ....|+.+.+... ........+..+..++.+.+..+ ........+..+..++........+.   ...|..+.+|+.+
T Consensus       228 ~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i  302 (394)
T 4fs7_A          228 SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEV  302 (394)
T ss_dssp             TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEE
T ss_pred             ccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec---ccccccccccccc
Confidence            3456666666542 12212233455666666666554 22222344556666666665544331   2345566677777


Q ss_pred             cCCCC-ccc-cccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCC-cccCCCCCCcE
Q 039599          192 GFSEL-DNL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEW  268 (293)
Q Consensus       192 ~l~~~-~~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~  268 (293)
                      .+..+ ..+ ...+..+.+|+.+++..+ +..++.          ..|.+|.+|+.+.+..+ ++.+. .+|.+|++|+.
T Consensus       303 ~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~----------~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  370 (394)
T 4fs7_A          303 KLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGK----------RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK  370 (394)
T ss_dssp             EECTTCCEECTTTTTTCTTCCEECCCTT-CCEECT----------TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred             ccccccceechhhhcCCCCCCEEEeCCc-ccEEhH----------HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence            66655 333 234556677777766432 333311          13667778888887655 55543 45777888888


Q ss_pred             EeccCCcCCCCchhHhhcccCCC
Q 039599          269 LHLRGNNLEGLPASIKQISRLES  291 (293)
Q Consensus       269 L~l~~n~l~~~p~~l~~l~~L~~  291 (293)
                      +++..+ ++.+...+..+.+|+.
T Consensus       371 i~lp~~-~~~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          371 VELPKR-LEQYRYDFEDTTKFKW  392 (394)
T ss_dssp             EEEEGG-GGGGGGGBCTTCEEEE
T ss_pred             EEECCC-CEEhhheecCCCCCcE
Confidence            887643 3334445666666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.49  E-value=1.7e-05  Score=68.63  Aligned_cols=106  Identities=16%  Similarity=0.296  Sum_probs=63.4

Q ss_pred             hhhccccCCceecCCCcccccCCCcccccccCceecCCCC-cccc-ccccCccccceecccCCCccCCCCcCCCCccCcc
Q 039599          157 SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSA  234 (293)
Q Consensus       157 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~  234 (293)
                      .|..++.|+.+.+..+.. ......|..+.+|+.+.+... ..++ ..+..+.+|+.+.+..+ ++.+          .-
T Consensus       260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I----------~~  327 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQI----------LD  327 (394)
T ss_dssp             TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE----------CT
T ss_pred             eeeecccccEEecccccc-eecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEe----------hH
Confidence            455566666666654332 333445666667777766554 3332 24555667777666432 2222          11


Q ss_pred             cccCCccccceeecCCccCCcCC-cccCCCCCCcEEeccCCc
Q 039599          235 SLLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEWLHLRGNN  275 (293)
Q Consensus       235 ~~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~  275 (293)
                      ..|.+|.+|+++.+..+ ++.+. .+|.+|++|+.+++.++.
T Consensus       328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            24778888888888654 66654 467888888888887764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.43  E-value=9.6e-06  Score=70.14  Aligned_cols=129  Identities=16%  Similarity=0.195  Sum_probs=82.0

Q ss_pred             ccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC-ccc-cccccCccccc
Q 039599          133 SICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNL-SDNIGNFKSFE  210 (293)
Q Consensus       133 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l-~~~~~~l~~L~  210 (293)
                      .+..+..|+.+.+... ....-...|..++.|+.+.+.. .++......|..+.+|+.+.+..+ ..+ ...+..+.+|+
T Consensus       260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred             eeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence            3445667777776543 2222235678889999999964 454555567889999999999877 444 34677889999


Q ss_pred             eecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcC
Q 039599          211 YMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNL  276 (293)
Q Consensus       211 ~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l  276 (293)
                      .+.+..+ +..+..          ..|.+|.+|+.+++.++... . ..+..+.+|+.+.+..+.+
T Consensus       338 ~i~ip~s-v~~I~~----------~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          338 RIAIPSS-VTKIPE----------SAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEEECTT-CCBCCG----------GGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC----------
T ss_pred             EEEECcc-cCEEhH----------hHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCCE
Confidence            9988543 444422          24889999999999987432 1 3466788888888766543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.41  E-value=4.9e-08  Score=75.40  Aligned_cols=66  Identities=14%  Similarity=0.125  Sum_probs=29.0

Q ss_pred             ccCCCCCCEEEeccC-ccccc----cccccccccccceecccccccCC----CCChhhhccccCCceecCCCccc
Q 039599          110 IKCLTNLKLLRINRC-TRLKR----VSTSICKLKSLIALSAYGCLNLE----RFPESLEKMEHLNQINLGRTTIT  175 (293)
Q Consensus       110 ~~~l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~  175 (293)
                      +...++|++|++++| .+...    +...+...++|++|++++|.+..    .+.+.+...+.|++|++++|.+.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            344455555555554 33321    11223334455555555554332    12233334445555555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.39  E-value=0.00011  Score=63.12  Aligned_cols=105  Identities=17%  Similarity=0.186  Sum_probs=57.7

Q ss_pred             hhhccccCCceecCCCcccccCCCcccccccCceecCCCC-cccc-ccccCccccceecccCCCccCCCCcCCCCccCcc
Q 039599          157 SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSA  234 (293)
Q Consensus       157 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~  234 (293)
                      .+..+..|+.+.+..+ ++......|..+.+|+.+.+... ..++ ..+..+.+|+.+.+.++.+..++.          
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~----------  303 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEP----------  303 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECT----------
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccceehh----------
Confidence            3455555666665443 33333345556666666666544 2222 244556666666666555544422          


Q ss_pred             cccCCccccceeecCCccCCcCC-cccCCCCCCcEEeccC
Q 039599          235 SLLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEWLHLRG  273 (293)
Q Consensus       235 ~~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~  273 (293)
                      ..|.+|.+|+.+.+..+ ++.+. .+|.+|++|+.+.+..
T Consensus       304 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          304 RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            13566777777777543 55543 3566677777776643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=1.3e-07  Score=72.95  Aligned_cols=88  Identities=15%  Similarity=0.137  Sum_probs=43.0

Q ss_pred             cccCCCCCCEEEeccCcccccc----ccccccccccceecccccccCCC----CChhhhccccCCceec--CCCcccccC
Q 039599          109 SIKCLTNLKLLRINRCTRLKRV----STSICKLKSLIALSAYGCLNLER----FPESLEKMEHLNQINL--GRTTITEQR  178 (293)
Q Consensus       109 ~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l--~~n~~~~~~  178 (293)
                      .+...++|++|++++|.+....    ...+...+.|++|++++|.+...    +.+.+...+.|++|++  ++|.+.+..
T Consensus        60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g  139 (185)
T 1io0_A           60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  139 (185)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence            3444555666666665543321    22233445566666666654421    3344455556666666  556554322


Q ss_pred             C----CcccccccCceecCCCC
Q 039599          179 P----SSFENVKGLETLGFSEL  196 (293)
Q Consensus       179 ~----~~~~~~~~L~~L~l~~~  196 (293)
                      .    ..+...++|+.|++++|
T Consensus       140 ~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          140 EMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCCCcCEEeccCC
Confidence            1    22233345555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=5.9e-07  Score=73.12  Aligned_cols=81  Identities=27%  Similarity=0.300  Sum_probs=55.5

Q ss_pred             cCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc--ccCCCCCCcEEeccCCcCCC-Cc
Q 039599          204 GNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ--EIGYLSSLEWLHLRGNNLEG-LP  280 (293)
Q Consensus       204 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~--~~~~~~~L~~L~l~~n~l~~-~p  280 (293)
                      ..++.|+.|++++|.+.+++.+..        .+..+++|+.|+|++|.|+++..  .+..+ +|+.|++++|.+.+ +|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~--------~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSS--------IVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTT--------HHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchh--------HHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence            356788888888888877632110        13467888888998888887522  23333 88899999998875 44


Q ss_pred             -------hhHhhcccCCCCC
Q 039599          281 -------ASIKQISRLESLD  293 (293)
Q Consensus       281 -------~~l~~l~~L~~ld  293 (293)
                             ..+..+|+|+.||
T Consensus       238 ~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEES
T ss_pred             cchhHHHHHHHHCcccCeEC
Confidence                   2366788888776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=3.8e-07  Score=69.12  Aligned_cols=81  Identities=16%  Similarity=0.291  Sum_probs=36.9

Q ss_pred             CccEEeccccccc-ccCccccCCCCCCEEEeccCcccc-ccccccccc----cccceecccccccC-CCCChhhhccccC
Q 039599           92 NITRLYLDETAIE-EVPSSIKCLTNLKLLRINRCTRLK-RVSTSICKL----KSLIALSAYGCLNL-ERFPESLEKMEHL  164 (293)
Q Consensus        92 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l----~~L~~L~l~~~~~~-~~~~~~~~~l~~L  164 (293)
                      .|++|+++++.++ .--..+.++++|++|++++|...+ ..-..++.+    ++|++|++++|... ..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            5666666666553 222334556666666666654222 212223332    24555555555322 1111223444455


Q ss_pred             CceecCCC
Q 039599          165 NQINLGRT  172 (293)
Q Consensus       165 ~~L~l~~n  172 (293)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.04  E-value=5.2e-06  Score=67.53  Aligned_cols=67  Identities=16%  Similarity=0.216  Sum_probs=38.1

Q ss_pred             cCCCCCCEEEeccCcccc--ccccccccccccceecccccccCCCCChhhhccc--cCCceecCCCcccccCC
Q 039599          111 KCLTNLKLLRINRCTRLK--RVSTSICKLKSLIALSAYGCLNLERFPESLEKME--HLNQINLGRTTITEQRP  179 (293)
Q Consensus       111 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~  179 (293)
                      ..+++|+.|++++|.+.+  .++..+..+++|+.|++++|.+.+.  ..+..++  +|++|++++|.+++..|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            345667777777666554  3334445666666666666655432  2233333  66666776666655443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.99  E-value=0.001  Score=56.98  Aligned_cols=267  Identities=12%  Similarity=0.123  Sum_probs=126.8

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEecccee-e-eccc---ceEEEeccCCcccccCCCCCCCcCceEEeec
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEIS-V-HMSI---EEQLLDSKGCKILRSFPSNLHFVSPVTIDFT   78 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~-~~~~---~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~   78 (293)
                      .++.|  .+. .....++..+|..+.+|+.+.+..+ +. . ..++   .++.+.+..+ ........+...+|+.+++.
T Consensus        47 ~i~~v--~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp  121 (379)
T 4h09_A           47 RISEV--RVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQGTDLDDFEFP  121 (379)
T ss_dssp             GCSEE--EEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTTCCCSEEECC
T ss_pred             CCEEE--EeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceeccCCcccccCC
Confidence            45666  333 2366788889999999999999653 22 1 1111   1444444332 11111223444477887775


Q ss_pred             CCcCCcccCCC-C--CCccEEecccccccccC-ccccCCCCCCEEEeccCcccccc------------ccccccccccce
Q 039599           79 SCINLTDFPHI-S--GNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRV------------STSICKLKSLIA  142 (293)
Q Consensus        79 ~~~~~~~~~~~-~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~------------~~~l~~l~~L~~  142 (293)
                      .+.  ..+... +  ..++...+..+ +..+. ..+..+..++...+.........            ...+.....+..
T Consensus       122 ~~~--~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (379)
T 4h09_A          122 GAT--TEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE  198 (379)
T ss_dssp             TTC--CEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred             Ccc--ccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence            432  222111 1  13444433322 22222 24555666666655443211110            011112222333


Q ss_pred             ecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC-ccc-cccccCccccceecccCCCcc
Q 039599          143 LSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNL-SDNIGNFKSFEYMGAHGSAIS  220 (293)
Q Consensus       143 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l-~~~~~~l~~L~~L~l~~~~~~  220 (293)
                      +.+... ........+..+..++.+.+..+ +.......|..+..|+.+.+..+ ..+ ...+..+..|+.+.+..+ +.
T Consensus       199 ~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~  275 (379)
T 4h09_A          199 FTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VK  275 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CS
T ss_pred             cccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc-ce
Confidence            322221 11112233445556666666443 22333345566666776666554 222 224445556666655322 22


Q ss_pred             CCCCcCCCCccCcccccCCccccceeecCCccCCcCC-cccCCCCCCcEEeccCCcCCCCc-hhHhhcccCCCC
Q 039599          221 QLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEWLHLRGNNLEGLP-ASIKQISRLESL  292 (293)
Q Consensus       221 ~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~~p-~~l~~l~~L~~l  292 (293)
                      .++.          ..|.++.+|+.+.+.++.++.++ .+|.+|.+|+.+.+..+ ++.+. ..+..|.+|+.+
T Consensus       276 ~i~~----------~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i  338 (379)
T 4h09_A          276 TVPY----------LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI  338 (379)
T ss_dssp             EECT----------TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred             eccc----------cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence            2211          12556667777777666666644 34666777777776533 44432 345555655544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.88  E-value=2.7e-06  Score=64.48  Aligned_cols=35  Identities=6%  Similarity=0.072  Sum_probs=17.5

Q ss_pred             CCCEEEeccCccccccccccccccccceecccccc
Q 039599          115 NLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL  149 (293)
Q Consensus       115 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  149 (293)
                      .|+.|++++|.++..--..+..+++|++|++++|.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            45555555555443333334455555555555553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.99  E-value=0.00021  Score=55.05  Aligned_cols=14  Identities=0%  Similarity=0.083  Sum_probs=6.4

Q ss_pred             CCCCCEEEeccCcc
Q 039599          113 LTNLKLLRINRCTR  126 (293)
Q Consensus       113 l~~L~~L~l~~~~~  126 (293)
                      -++|+.|++++|.+
T Consensus        69 N~~L~~L~L~~n~i   82 (197)
T 1pgv_A           69 SKHIEKFSLANTAI   82 (197)
T ss_dssp             CSCCCEEECTTSCC
T ss_pred             CCCcCEEEccCCCC
Confidence            34444444444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.97  E-value=0.00035  Score=53.81  Aligned_cols=86  Identities=17%  Similarity=0.131  Sum_probs=53.9

Q ss_pred             ccCCCCCCEEEeccC-ccccc----cccccccccccceecccccccCC----CCChhhhccccCCceecCCCcccccCCC
Q 039599          110 IKCLTNLKLLRINRC-TRLKR----VSTSICKLKSLIALSAYGCLNLE----RFPESLEKMEHLNQINLGRTTITEQRPS  180 (293)
Q Consensus       110 ~~~l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~  180 (293)
                      +..-++|+.|+++++ .+...    +.+.+..-+.|++|++++|.+..    .+.+.+...+.|++|++++|.+.+....
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345677888888875 44322    23445566778888888887652    3455566677788888888887543222


Q ss_pred             ----cccccccCceecCCC
Q 039599          181 ----SFENVKGLETLGFSE  195 (293)
Q Consensus       181 ----~~~~~~~L~~L~l~~  195 (293)
                          .+...+.|++|++++
T Consensus       117 ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHhhCCceeEEECCC
Confidence                233345566666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.71  E-value=0.0034  Score=44.95  Aligned_cols=53  Identities=19%  Similarity=0.250  Sum_probs=37.6

Q ss_pred             EEeecCCcCCc--ccCCCCC-CccEEecccccccccCc-cccCCCCCCEEEeccCccc
Q 039599           74 TIDFTSCINLT--DFPHISG-NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRL  127 (293)
Q Consensus        74 ~L~l~~~~~~~--~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~  127 (293)
                      .++-++.. ++  .+|..++ ++++|+|++|.+..++. .|..+++|++|++++|.+.
T Consensus        12 ~v~Cs~~~-L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRG-LTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSC-CCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCC-CccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            45555555 44  6776554 68888888888888876 5677888888888887643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.20  E-value=0.0092  Score=42.66  Aligned_cols=37  Identities=27%  Similarity=0.230  Sum_probs=27.8

Q ss_pred             cccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCC
Q 039599          241 SLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       241 ~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~  277 (293)
                      +++++|+|++|.|+.+|. .+..+++|+.|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            357788888888887664 4567788888888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 5e-07
 Identities = 38/197 (19%), Positives = 70/197 (35%), Gaps = 12/197 (6%)

Query: 82  NLTDFP-HISGNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSICKLKS 139
           NLT  P  +  + T L+L E  +     +++   T L  L ++R    K        +  
Sbjct: 21  NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80

Query: 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNL 199
            + LS     +L    ++L  +  L+      T++          ++ L   G       
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 200 SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE 259
              +      E +    + +++LP+           LL+GL  L  L L   +L +IP+ 
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPA----------GLLNGLENLDTLLLQENSLYTIPKG 190

Query: 260 IGYLSSLEWLHLRGNNL 276
                 L +  L GN  
Sbjct: 191 FFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 246 LHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLP-ASIKQISRLESLD 293
           ++ +   LT++P ++        LHL  N L     A++   +RL  L+
Sbjct: 15  VNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 244 YWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
                NN    ++PQ +  L  L  L++  NNL G       + R +   
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 227 SGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNN-LEGLP 280
            G +P     L+ L  L+ L+++   L     + G L   +      N  L G P
Sbjct: 257 YGTLPQG---LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 8e-06
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 15/157 (9%)

Query: 148 CLNLERFPESLEKMEHLNQINLGRTTITEQRPS-----------SFENVKGLETLGFSEL 196
             N  +   +L  + +L  ++L    I+   P                +  +  L     
Sbjct: 227 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 286

Query: 197 DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSI 256
               +   N        ++   ++ L    + +  +S   +S L+ L  L   N  ++ +
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV 344

Query: 257 PQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
              +  L+++ WL    N +  L   +  ++R+  L 
Sbjct: 345 S-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 237 LSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292
            + L  +  L  +   + SI   + YL++L  ++   N L  +   +K +++L  +
Sbjct: 40  QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDI 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 235 SLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRL 289
            L +    L  L  +   L  +P+      +L+ LH+  N L   P   + +  L
Sbjct: 298 ELPALPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 240 LSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRL 289
              L  L+++N  L  +P        LE L    N+L  +P   + + +L
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNLKQL 329

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 246 LHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISR 288
           L LNN  L+S+P+       LE L    N+L  LP   + +  
Sbjct: 43  LELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKS 82

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 33/191 (17%), Positives = 74/191 (38%), Gaps = 10/191 (5%)

Query: 92  NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151
            + RLYL +  ++E+P  +        +  N  T++++   +      ++ L      + 
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEY 211
                + + M+ L+ I +  T IT        ++  L   G       + ++    +   
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 212 MGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL 271
           +G   ++IS + + S    P           L  LHLNN  L  +P  +     ++ ++L
Sbjct: 200 LGLSFNSISAVDNGSLANTPH----------LRELHLNNNKLVKVPGGLADHKYIQVVYL 249

Query: 272 RGNNLEGLPAS 282
             NN+  + ++
Sbjct: 250 HNNNISAIGSN 260

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 243 LYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293
           L  L  ++  ++ I   +  L +L  +HL+ N +  +   +   S L  + 
Sbjct: 175 LTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.34
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.24
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.35
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.74
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.7
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.2
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.11

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=3.8e-25  Score=185.10  Aligned_cols=231  Identities=19%  Similarity=0.209  Sum_probs=177.3

Q ss_pred             eEEEeccCCcccc--cCCCCCCC-cCceEEeecC-CcCCcccCCCC---CCccEEecccccccccC-ccccCCCCCCEEE
Q 039599           49 EQLLDSKGCKILR--SFPSNLHF-VSPVTIDFTS-CINLTDFPHIS---GNITRLYLDETAIEEVP-SSIKCLTNLKLLR  120 (293)
Q Consensus        49 l~~L~l~~~~~~~--~~~~~~~~-~~L~~L~l~~-~~~~~~~~~~~---~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~  120 (293)
                      ++.|+++++...+  .+|..++. ++|++|++++ |.+.+.+|..+   .+|++|++++|++..++ ..+..+.+|++++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            6777777776555  35666654 4888888886 55555777654   47888888888887554 4577888888999


Q ss_pred             eccCccccccccccccccccceecccccccCCCCChhhhccccC-CceecCCCcccccCCCcccccccCceecCCCC---
Q 039599          121 INRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHL-NQINLGRTTITEQRPSSFENVKGLETLGFSEL---  196 (293)
Q Consensus       121 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---  196 (293)
                      +++|.....+|..+..++.++.+++++|.+.+.+|..+..+.++ +.+++++|.+++..+..+..+.. ..+++..+   
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~  210 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEE
T ss_pred             cccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            88888887888888888888889988888888888888777775 78888888888777777766554 35777766   


Q ss_pred             ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCc
Q 039599          197 DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNN  275 (293)
Q Consensus       197 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~  275 (293)
                      +..+..+..++.++.+++.++.+.+.+.           .++.+++|+.|++++|++++ +|.+++.+++|+.|+|++|+
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-----------~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-----------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-----------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cccccccccccccccccccccccccccc-----------ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            5567777888888999888888776532           24567889999999999985 89889999999999999999


Q ss_pred             CCC-CchhHhhcccCCCC
Q 039599          276 LEG-LPASIKQISRLESL  292 (293)
Q Consensus       276 l~~-~p~~l~~l~~L~~l  292 (293)
                      +++ +|. +..+.+|+.+
T Consensus       280 l~g~iP~-~~~L~~L~~l  296 (313)
T d1ogqa_         280 LCGEIPQ-GGNLQRFDVS  296 (313)
T ss_dssp             EEEECCC-STTGGGSCGG
T ss_pred             ccccCCC-cccCCCCCHH
Confidence            986 774 5566666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.4e-23  Score=179.94  Aligned_cols=276  Identities=15%  Similarity=0.218  Sum_probs=160.3

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecC
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTS   79 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~   79 (293)
                      .++.+  +++++.+..+.  .+..+++|++|++++|.+...+.+.    |++|++++|++.. ++..-.+++|+.|++++
T Consensus        45 ~l~~L--~l~~~~I~~l~--gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~-i~~l~~l~~L~~L~~~~  119 (384)
T d2omza2          45 QVTTL--QADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFN  119 (384)
T ss_dssp             TCCEE--ECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCS
T ss_pred             CCCEE--ECCCCCCCCcc--ccccCCCCCEEeCcCCcCCCCccccCCccccccccccccccc-ccccccccccccccccc
Confidence            34444  77877766664  5778899999999999887554443    8999999998654 34334456889998887


Q ss_pred             CcCCcccCCC-CCCccEEeccccc------------------------------------------ccccCccccCCCCC
Q 039599           80 CINLTDFPHI-SGNITRLYLDETA------------------------------------------IEEVPSSIKCLTNL  116 (293)
Q Consensus        80 ~~~~~~~~~~-~~~L~~L~l~~~~------------------------------------------~~~l~~~~~~l~~L  116 (293)
                      +......+.. ...+.......+.                                          .......+..++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (384)
T d2omza2         120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL  199 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence            7643211100 0011111000000                                          00111233445566


Q ss_pred             CEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599          117 KLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       117 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  196 (293)
                      +.+++++|.+....+  ...+++|++|++++|.+.. + +.+..+++|+.+++++|.+++..  .+..+++|+.++++++
T Consensus       200 ~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~  273 (384)
T d2omza2         200 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGAN  273 (384)
T ss_dssp             SEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSS
T ss_pred             ceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCc
Confidence            666666655443222  2344556666666654332 2 23555566666666666554321  2445555666665554


Q ss_pred             --ccccccccCccccceecccCCCccCCCCc--CCCCccCccc--------ccCCccccceeecCCccCCcCCcccCCCC
Q 039599          197 --DNLSDNIGNFKSFEYMGAHGSAISQLPSL--SSGLVPLSAS--------LLSGLSLLYWLHLNNCALTSIPQEIGYLS  264 (293)
Q Consensus       197 --~~l~~~~~~l~~L~~L~l~~~~~~~~~~l--~~~l~~l~~~--------~~~~~~~L~~L~l~~n~i~~l~~~~~~~~  264 (293)
                        ..++ .+..++.++.+.+..|.+.+++.+  ...++.++++        .+..+++|++|++++|.+++++ .+..++
T Consensus       274 ~l~~~~-~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~-~l~~l~  351 (384)
T d2omza2         274 QISNIS-PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLT  351 (384)
T ss_dssp             CCCCCG-GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCT
T ss_pred             ccCCCC-ccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCCh-hHcCCC
Confidence              1221 233444444444444444433211  1222222211        2568899999999999999887 588899


Q ss_pred             CCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599          265 SLEWLHLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       265 ~L~~L~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      +|+.|++++|+++++++ +..+++|+.|+
T Consensus       352 ~L~~L~l~~N~l~~l~~-l~~l~~L~~L~  379 (384)
T d2omza2         352 NINWLSAGHNQISDLTP-LANLTRITQLG  379 (384)
T ss_dssp             TCCEEECCSSCCCBCGG-GTTCTTCSEEE
T ss_pred             CCCEEECCCCcCCCChh-hccCCCCCEee
Confidence            99999999999999875 88889988764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=2.4e-24  Score=180.15  Aligned_cols=219  Identities=18%  Similarity=0.218  Sum_probs=176.7

Q ss_pred             eEEEeccC-CcccccCCCCCCCc-CceEEeecCCcCCcccCCC---CCCccEEeccccccc-ccCccccCCCCCCEEEec
Q 039599           49 EQLLDSKG-CKILRSFPSNLHFV-SPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIE-EVPSSIKCLTNLKLLRIN  122 (293)
Q Consensus        49 l~~L~l~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~  122 (293)
                      |++|++++ |.+.+.+|..++.. +|++|++++|.+.+..+..   ...|+.+++++|.+. .+|..+..++.+++++++
T Consensus        78 L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~  157 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecc
Confidence            44444443 44566778777644 9999999999865544433   457899999998864 778889999999999999


Q ss_pred             cCcccccccccccccccc-ceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccc
Q 039599          123 RCTRLKRVSTSICKLKSL-IALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNL  199 (293)
Q Consensus       123 ~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l  199 (293)
                      +|...+.+|..+..+..+ +.+++++|.+.+..+..+..+.. ..+++.++...+..+..+..+++++.++++++  ...
T Consensus       158 ~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            999888888888887775 88899999888888888877765 47999999988888888888999999999988  334


Q ss_pred             cccccCccccceecccCCCccC-CCCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCc-C
Q 039599          200 SDNIGNFKSFEYMGAHGSAISQ-LPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNN-L  276 (293)
Q Consensus       200 ~~~~~~l~~L~~L~l~~~~~~~-~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~-l  276 (293)
                      +..+..+++++.|++++|++++ +|.           .++.+++|++|++++|++++ +|. ++.+++|+.+++++|+ +
T Consensus       237 ~~~~~~~~~L~~L~Ls~N~l~g~iP~-----------~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         237 LGKVGLSKNLNGLDLRNNRIYGTLPQ-----------GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             GGGCCCCTTCCEEECCSSCCEECCCG-----------GGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEE
T ss_pred             ccccccccccccccCccCeecccCCh-----------HHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccc
Confidence            5567889999999999999985 476           36788999999999999996 874 6788999999999997 5


Q ss_pred             CCCc
Q 039599          277 EGLP  280 (293)
Q Consensus       277 ~~~p  280 (293)
                      .+.|
T Consensus       305 ~g~p  308 (313)
T d1ogqa_         305 CGSP  308 (313)
T ss_dssp             ESTT
T ss_pred             cCCC
Confidence            5543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=5e-21  Score=159.16  Aligned_cols=250  Identities=14%  Similarity=0.149  Sum_probs=196.5

Q ss_pred             ecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCCC-cCceEEeecCCcCC
Q 039599           11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCINL   83 (293)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~   83 (293)
                      |.++.....++. .+.  +++++|++++|++...+  .+.    |++|++++|......|..+.. .+|++|++++|. .
T Consensus        16 ~C~~~~L~~lP~-~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l   91 (305)
T d1xkua_          16 QCSDLGLEKVPK-DLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-L   91 (305)
T ss_dssp             ECTTSCCCSCCC-SCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-C
T ss_pred             EecCCCCCccCC-CCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-c
Confidence            667666666664 332  57999999999887432  222    999999999988776777764 599999999998 5


Q ss_pred             cccCCC-CCCccEEecccccccccCc-cccCCCCCCEEEeccCcccc--ccccccccccccceecccccccCCCCChhhh
Q 039599           84 TDFPHI-SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLK--RVSTSICKLKSLIALSAYGCLNLERFPESLE  159 (293)
Q Consensus        84 ~~~~~~-~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  159 (293)
                      +.+|.. ...++.|++.+|.+..++. .+......+.++...+....  ..+..+..+++|+.+++++|.+. .++..  
T Consensus        92 ~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--  168 (305)
T d1xkua_          92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--  168 (305)
T ss_dssp             SBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--
T ss_pred             CcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--
Confidence            566654 4589999999999988876 45677888889888765432  23455778889999999998665 34433  


Q ss_pred             ccccCCceecCCCcccccCCCcccccccCceecCCCC--cc-ccccccCccccceecccCCCccCCCCcCCCCccCcccc
Q 039599          160 KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DN-LSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL  236 (293)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~-l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~  236 (293)
                      .++++++|++++|..+...+..+..++.++.|++++|  .. .+..+..+++|++|++++|.+..+|.           .
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-----------~  237 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-----------G  237 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-----------T
T ss_pred             cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc-----------c
Confidence            3678999999999998888888999999999999998  33 35677889999999999999998865           3


Q ss_pred             cCCccccceeecCCccCCcCCcc-------cCCCCCCcEEeccCCcCCC
Q 039599          237 LSGLSLLYWLHLNNCALTSIPQE-------IGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       237 ~~~~~~L~~L~l~~n~i~~l~~~-------~~~~~~L~~L~l~~n~l~~  278 (293)
                      +..+++|++|++++|+|+.++..       ....++|+.|++++|+++.
T Consensus       238 l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            66889999999999999986532       2457889999999999873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-21  Score=160.10  Aligned_cols=212  Identities=18%  Similarity=0.271  Sum_probs=162.1

Q ss_pred             eccCCcccccCCCCCCCcCceEEeecCCcCCcccCC-C---CCCccEEecccccccccCc-cccCCCCCCEEEeccCccc
Q 039599           53 DSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPH-I---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRL  127 (293)
Q Consensus        53 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~  127 (293)
                      ++.++. +..+|..+. .++++|++++|. ++.+|. .   +.+|++|++++|.+..++. .+..+..++.+.+..+...
T Consensus        17 ~c~~~~-L~~iP~~ip-~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          17 SCPQQG-LQAVPVGIP-AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             ECCSSC-CSSCCTTCC-TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EcCCCC-CCccCCCCC-CCCCEEECcCCc-CCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            444443 556666442 378899999988 455553 2   3478888999999887765 5567788888877654444


Q ss_pred             ccc-ccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccc-cccc
Q 039599          128 KRV-STSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNL-SDNI  203 (293)
Q Consensus       128 ~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~  203 (293)
                      ..+ +..+.++++|++|++++|......+..+...++|+.+++++|.+++..+..|..+++|+.|++++|  ..+ +..+
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f  173 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhh
Confidence            433 566788899999999998776656667788888999999999997666677888889999999988  333 4567


Q ss_pred             cCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCcCC-cccCCCCCCcEEeccCCcCCC
Q 039599          204 GNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEWLHLRGNNLEG  278 (293)
Q Consensus       204 ~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~  278 (293)
                      ..+++|+.+++++|.+.++ |.           .|.++++|++|++++|.+++++ .++..+++|+.|++++|++..
T Consensus       174 ~~l~~L~~l~l~~N~l~~i~~~-----------~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHVHPH-----------AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTT-----------TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccccccchhhhhhccccccChh-----------HhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            7889999999999988877 44           3678888999999999998854 568889999999999998874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.6e-21  Score=157.75  Aligned_cols=193  Identities=20%  Similarity=0.190  Sum_probs=158.5

Q ss_pred             CceEEeecCCcCCcccCCCCC-CccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599           71 SPVTIDFTSCINLTDFPHISG-NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC  148 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  148 (293)
                      .+.+++-+++. ++.+|..++ ++++|++++|.+..+++ .|.++++|++|++++|.+.. ++ .++.+++|++|++++|
T Consensus        11 ~~~~v~C~~~~-L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          11 SHLEVNCDKRN-LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TCCEEECTTSC-CSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSS
T ss_pred             CCeEEEccCCC-CCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccc
Confidence            34455666666 667887664 79999999999998875 68899999999999987653 44 3468899999999999


Q ss_pred             ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccCCCCc
Q 039599          149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQLPSL  225 (293)
Q Consensus       149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~~~~l  225 (293)
                      .+. ..+..+..+++|++|++++|.+.+..+..+..+.+++.|.++++  ..++ ..+..++.++.+++++|.+++++.-
T Consensus        88 ~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~  166 (266)
T d1p9ag_          88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (266)
T ss_dssp             CCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             ccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcc
Confidence            665 45667888999999999999987766777888899999999988  4444 4556789999999999999988431


Q ss_pred             CCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCC
Q 039599          226 SSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       226 ~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~  277 (293)
                                .+..+++|++|++++|.|+.+|..+..+++|+.|+|++|++.
T Consensus       167 ----------~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         167 ----------LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ----------TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ----------ccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence                      256889999999999999999998889999999999999886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=6.8e-21  Score=162.98  Aligned_cols=247  Identities=17%  Similarity=0.207  Sum_probs=154.7

Q ss_pred             ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCC------------
Q 039599            4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNL------------   67 (293)
Q Consensus         4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~------------   67 (293)
                      .++.+  |+++|....++  .++++++|++|++++|.+.....+.    |+.++++++......+...            
T Consensus        67 nL~~L--~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (384)
T d2omza2          67 NLTQI--NFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN  142 (384)
T ss_dssp             TCCEE--ECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred             CCCEE--eCcCCcCCCCc--cccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34445  99999888776  4999999999999999987544333    8888887766433111000            


Q ss_pred             ----------------------------------------------------CCcCceEEeecCCcCCcccC-CCCCCcc
Q 039599           68 ----------------------------------------------------HFVSPVTIDFTSCINLTDFP-HISGNIT   94 (293)
Q Consensus        68 ----------------------------------------------------~~~~L~~L~l~~~~~~~~~~-~~~~~L~   94 (293)
                                                                          .+++++.+++++|.+....| ....+++
T Consensus       143 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~  222 (384)
T d2omza2         143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD  222 (384)
T ss_dssp             EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCC
T ss_pred             cccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccccCCCC
Confidence                                                                11234444444444222211 1123555


Q ss_pred             EEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcc
Q 039599           95 RLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTI  174 (293)
Q Consensus        95 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~  174 (293)
                      +|++++|.+..++ .+..+++|+.|++++|.+.+..  .+..+++|++|+++++.+.+ ++ .+..++.++.+++..|.+
T Consensus       223 ~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~-~~-~~~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         223 ELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISN-IS-PLAGLTALTNLELNENQL  297 (384)
T ss_dssp             EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCC
T ss_pred             EEECCCCCCCCcc-hhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCC-CC-cccccccccccccccccc
Confidence            5555555555443 3445555666666555443321  14455556666665554432 11 244555556666666555


Q ss_pred             cccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCcc
Q 039599          175 TEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCA  252 (293)
Q Consensus       175 ~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~  252 (293)
                      ++  ...+..+++++.|+++++  ..++ .+..+++|++|++++|.+++++.            ++++++|++|++++|.
T Consensus       298 ~~--~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l~~------------l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         298 ED--ISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVSS------------LANLTNINWLSAGHNQ  362 (384)
T ss_dssp             SC--CGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCCGG------------GGGCTTCCEEECCSSC
T ss_pred             cc--ccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCChh------------HcCCCCCCEEECCCCc
Confidence            33  233566677788888777  3333 36677888888888888776654            6688999999999999


Q ss_pred             CCcCCcccCCCCCCcEEeccCCc
Q 039599          253 LTSIPQEIGYLSSLEWLHLRGNN  275 (293)
Q Consensus       253 i~~l~~~~~~~~~L~~L~l~~n~  275 (293)
                      +++++. ++++++|+.|++++|.
T Consensus       363 l~~l~~-l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         363 ISDLTP-LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCBCGG-GTTCTTCSEEECCCEE
T ss_pred             CCCChh-hccCCCCCEeeCCCCc
Confidence            999765 8899999999999984

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=7.2e-21  Score=158.16  Aligned_cols=225  Identities=17%  Similarity=0.248  Sum_probs=163.9

Q ss_pred             eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCC-C---CCCccEEecccccccccCc-cccCCCCCCEEEecc
Q 039599           49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPH-I---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINR  123 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~  123 (293)
                      .+.++..+.. +..+|..+. .++++|++++|. ++.+|. .   +.+|++|++++|.+..+++ .|.++++|++|++++
T Consensus        12 ~~~~~C~~~~-L~~lP~~l~-~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLG-LEKVPKDLP-PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSC-CCSCCCSCC-TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCC-CCccCCCCC-CCCCEEECcCCc-CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            4456666544 556777652 489999999998 566653 3   3478999999999988754 788999999999999


Q ss_pred             CccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcc--cccCCCcccccccCceecCCCC--ccc
Q 039599          124 CTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTI--TEQRPSSFENVKGLETLGFSEL--DNL  199 (293)
Q Consensus       124 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~~~L~~L~l~~~--~~l  199 (293)
                      |.+.. +|..  ..+.++.|+..+|.+.+..+..+......+.++...+..  ....+..+..+++|+.++++++  ..+
T Consensus        89 n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          89 NQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             SCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            87654 4543  345788888888877655555677777888888887754  2334456778889999999988  334


Q ss_pred             cccccCccccceecccCCCccCC-CC-cC--CCCccCcc----------cccCCccccceeecCCccCCcCCcccCCCCC
Q 039599          200 SDNIGNFKSFEYMGAHGSAISQL-PS-LS--SGLVPLSA----------SLLSGLSLLYWLHLNNCALTSIPQEIGYLSS  265 (293)
Q Consensus       200 ~~~~~~l~~L~~L~l~~~~~~~~-~~-l~--~~l~~l~~----------~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~  265 (293)
                      +..  ..++++++++++|..... +. +.  ..++.|++          ..+.++++|++|++++|.|+.+|.++..+++
T Consensus       166 ~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~  243 (305)
T d1xkua_         166 PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY  243 (305)
T ss_dssp             CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred             Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccC
Confidence            432  356788888888876655 22 11  22333332          2367788999999999999999988999999


Q ss_pred             CcEEeccCCcCCCCch
Q 039599          266 LEWLHLRGNNLEGLPA  281 (293)
Q Consensus       266 L~~L~l~~n~l~~~p~  281 (293)
                      |+.|++++|+|+.++.
T Consensus       244 L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         244 IQVVYLHNNNISAIGS  259 (305)
T ss_dssp             CCEEECCSSCCCCCCT
T ss_pred             CCEEECCCCccCccCh
Confidence            9999999999988653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.3e-20  Score=153.58  Aligned_cols=187  Identities=17%  Similarity=0.185  Sum_probs=156.0

Q ss_pred             CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599           91 GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG  170 (293)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  170 (293)
                      ..+.+++.++++++++|+.+.  +++++|++++|.+....+..+..+++|++|++++|.+. .++ .++.+++|++|+++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccc
Confidence            355677899999999998664  58999999999877655577889999999999999665 443 35789999999999


Q ss_pred             CCcccccCCCcccccccCceecCCCC--cc-ccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceee
Q 039599          171 RTTITEQRPSSFENVKGLETLGFSEL--DN-LSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLH  247 (293)
Q Consensus       171 ~n~~~~~~~~~~~~~~~L~~L~l~~~--~~-l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~  247 (293)
                      +|.+.. .+..+..+++|+.|+++++  .. .+..+..+.+++++++++|.+..+|.-          .+..+++++.++
T Consensus        86 ~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~----------~~~~l~~l~~l~  154 (266)
T d1p9ag_          86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG----------LLTPTPKLEKLS  154 (266)
T ss_dssp             SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT----------TTTTCTTCCEEE
T ss_pred             cccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccc----------cccccccchhcc
Confidence            999954 5667889999999999998  33 344567889999999999999988541          255778999999


Q ss_pred             cCCccCCcCC-cccCCCCCCcEEeccCCcCCCCchhHhhcccCCCC
Q 039599          248 LNNCALTSIP-QEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL  292 (293)
Q Consensus       248 l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~l  292 (293)
                      +++|+++.++ ..+..+++|+.|+|++|+|+.+|+.+..+++|+.|
T Consensus       155 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA  200 (266)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred             cccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEE
Confidence            9999999965 56788999999999999999999988888888765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.3e-20  Score=151.32  Aligned_cols=196  Identities=15%  Similarity=0.155  Sum_probs=113.0

Q ss_pred             eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCC---CCCccEEecc-cccccccCc-cccCCCCCCEEEec
Q 039599           49 EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHI---SGNITRLYLD-ETAIEEVPS-SIKCLTNLKLLRIN  122 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~-~~~~~~l~~-~~~~l~~L~~L~l~  122 (293)
                      +++|++++|.+.+.-+..+. +.+|++|+++++.+....+..   ...++.+... .+.+..+++ .+.++++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            56677776665433333343 336777777666633222222   2244555433 344555533 55666667777776


Q ss_pred             cCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---ccc
Q 039599          123 RCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNL  199 (293)
Q Consensus       123 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l  199 (293)
                      +|......+..+....+|+.+++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|+.+.+++|   +..
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence            66654444444555666666777666555444555666666777777776665555556666666777776666   233


Q ss_pred             cccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCC
Q 039599          200 SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALT  254 (293)
Q Consensus       200 ~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~  254 (293)
                      +..+..+++|+++++++|.+.+++.          ..+..+++|++|++++|.+.
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~~~~----------~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSALPT----------EALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCH----------HHHTTCTTCCEEECCSSCEE
T ss_pred             hhHhhhhhhcccccccccccccccc----------cccccccccCEEEecCCCCC
Confidence            5566666667777777766666532          02445666667777666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=4e-19  Score=141.22  Aligned_cols=183  Identities=18%  Similarity=0.263  Sum_probs=126.6

Q ss_pred             CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599           90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL  169 (293)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  169 (293)
                      +.+|++|++.+|++..++ .+..+++|++|++++|.+....+  +..+++++.+++++|... .+ +.+..+++|+.+++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NV-SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CC-GGGTTCTTCCEEEC
T ss_pred             cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-cc-cccccccccccccc
Confidence            346677777777777663 46777788888887776554322  567777777777777543 33 34667777888888


Q ss_pred             CCCcccccCCCcccccccCceecCCCC-ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeec
Q 039599          170 GRTTITEQRPSSFENVKGLETLGFSEL-DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL  248 (293)
Q Consensus       170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l  248 (293)
                      +++...+.  ..+...+.++.+.++.+ ......+..+++|+++.+++|.+...+.            ++++++|++|++
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~------------l~~l~~L~~L~L  180 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP------------LANLSKLTTLKA  180 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG------------GTTCTTCCEEEC
T ss_pred             cccccccc--chhccccchhhhhchhhhhchhhhhccccccccccccccccccchh------------hcccccceeccc
Confidence            77766432  23455667777777666 2222345667778888888887766543            457788888888


Q ss_pred             CCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599          249 NNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       249 ~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      ++|.+++++. ++.+++|+.|++++|+++++++ ++.+++|+.||
T Consensus       181 s~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~  223 (227)
T d1h6ua2         181 DDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVT  223 (227)
T ss_dssp             CSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEE
T ss_pred             CCCccCCChh-hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEE
Confidence            8888887754 6778888888888888888774 77778877654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=4.8e-18  Score=143.17  Aligned_cols=238  Identities=16%  Similarity=0.148  Sum_probs=126.2

Q ss_pred             cccEEEEeccceeeeccc--ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEecccccccccC
Q 039599           30 NLRVLKFYIPEISVHMSI--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVP  107 (293)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~  107 (293)
                      ++++|+++++.++..++.  .+++|++++|.+. .+|..+  .+|+.|++++|. .+.++.....|++|++++|.+..+|
T Consensus        39 ~l~~LdLs~~~L~~lp~~~~~L~~L~Ls~N~l~-~lp~~~--~~L~~L~l~~n~-l~~l~~lp~~L~~L~L~~n~l~~lp  114 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELP--QSLKSLLVDNNN-LKALSDLPPLLEYLGVSNNQLEKLP  114 (353)
T ss_dssp             TCSEEECTTSCCSCCCSCCTTCSEEECCSSCCS-SCCCCC--TTCCEEECCSSC-CSCCCSCCTTCCEEECCSSCCSSCC
T ss_pred             CCCEEEeCCCCCCCCCCCCCCCCEEECCCCCCc-ccccch--hhhhhhhhhhcc-cchhhhhcccccccccccccccccc
Confidence            355555555554432222  2555555555432 344332  256666666655 4444444445666666666665555


Q ss_pred             ccccCCCCCCEEEeccCcccccc------------------ccccccccccceecccccccCCC----------------
Q 039599          108 SSIKCLTNLKLLRINRCTRLKRV------------------STSICKLKSLIALSAYGCLNLER----------------  153 (293)
Q Consensus       108 ~~~~~l~~L~~L~l~~~~~~~~~------------------~~~l~~l~~L~~L~l~~~~~~~~----------------  153 (293)
                      . ++.+++|++|+++++......                  ...+..++.++.+.+++|.....                
T Consensus       115 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~  193 (353)
T d1jl5a_         115 E-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI  193 (353)
T ss_dssp             C-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC
T ss_pred             c-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccc
Confidence            3 345566666666554432111                  11223344555555554433210                


Q ss_pred             --CChhhhccccCCceecCCCcccccCCCcccc-----------------cccCceecCCCC------------------
Q 039599          154 --FPESLEKMEHLNQINLGRTTITEQRPSSFEN-----------------VKGLETLGFSEL------------------  196 (293)
Q Consensus       154 --~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----------------~~~L~~L~l~~~------------------  196 (293)
                        ....+..++.++.+++++|.... .+.....                 ...+....+..+                  
T Consensus       194 ~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~  272 (353)
T d1jl5a_         194 LEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS  272 (353)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccchhcccccc
Confidence              01123455667777777665432 2211110                 111222222111                  


Q ss_pred             -ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCc
Q 039599          197 -DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNN  275 (293)
Q Consensus       197 -~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~  275 (293)
                       ..+......+++|++|++++|.+..+|.              .+++|+.|++++|+|+++|.   .+++|+.|++++|+
T Consensus       273 ~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~--------------~~~~L~~L~L~~N~L~~l~~---~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         273 SNEIRSLCDLPPSLEELNVSNNKLIELPA--------------LPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP  335 (353)
T ss_dssp             SSCCSEECCCCTTCCEEECCSSCCSCCCC--------------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred             cCccccccccCCCCCEEECCCCccCcccc--------------ccCCCCEEECCCCcCCcccc---ccCCCCEEECcCCc
Confidence             0111112234677888888887777655              45788999999999988875   35689999999999


Q ss_pred             CCCCchhHhhcccCC
Q 039599          276 LEGLPASIKQISRLE  290 (293)
Q Consensus       276 l~~~p~~l~~l~~L~  290 (293)
                      ++.+|+....+.+|+
T Consensus       336 L~~lp~~~~~L~~L~  350 (353)
T d1jl5a_         336 LREFPDIPESVEDLR  350 (353)
T ss_dssp             CSSCCCCCTTCCEEE
T ss_pred             CCCCCccccccCeeE
Confidence            998887655566554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.1e-18  Score=133.18  Aligned_cols=160  Identities=20%  Similarity=0.317  Sum_probs=104.9

Q ss_pred             CCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceec
Q 039599          113 LTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLG  192 (293)
Q Consensus       113 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  192 (293)
                      ++++++|++++|.+.. + ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.. ++ .+.++++|+.++
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~-~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-cc-cccCCccccccccccccccc-cc-cccccccccccc
Confidence            4455555555554332 1 124455555555555554433 22 25556666666666665532 22 355666666666


Q ss_pred             CCCC-ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEec
Q 039599          193 FSEL-DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL  271 (293)
Q Consensus       193 l~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l  271 (293)
                      ++++ ......+..+++|+.+++++|.+..++.            +..++++++|++.+|.+++++. ++++++|+.|++
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~l  179 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNTISDISA------------LSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDI  179 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG------------GTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             ccccccccccccchhhhhHHhhhhhhhhccccc------------ccccccccccccccccccCCcc-ccCCCCCCEEEC
Confidence            6666 2222345667788888888888776654            5577889999999999988764 788999999999


Q ss_pred             cCCcCCCCchhHhhcccCCCC
Q 039599          272 RGNNLEGLPASIKQISRLESL  292 (293)
Q Consensus       272 ~~n~l~~~p~~l~~l~~L~~l  292 (293)
                      ++|++++++ .+..+++|+.|
T Consensus       180 s~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         180 SSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CSSCCCCCG-GGGGCTTCSEE
T ss_pred             CCCCCCCCc-cccCCCCCCcC
Confidence            999999886 47888888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.4e-17  Score=133.32  Aligned_cols=209  Identities=12%  Similarity=0.145  Sum_probs=129.6

Q ss_pred             eEEeecCCcCCcccCCCCC-CccEEecccccccccCc-cccCCCCCCEEEeccCccccccc-cccccccccceeccccc-
Q 039599           73 VTIDFTSCINLTDFPHISG-NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVS-TSICKLKSLIALSAYGC-  148 (293)
Q Consensus        73 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~-  148 (293)
                      +.++.++.. .+.+|..++ ++++|++++|.+..+|. +|.++++|++|++++|.....++ ..+..++.++++.+..+ 
T Consensus        11 ~~i~c~~~~-l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESK-VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCS-CSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCC-CCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            455565555 556765543 78888888888887776 57778888888888877665443 45667778888776653 


Q ss_pred             ccCCCCChhhhccccCCceecCCCcccccCCCc-ccccccCceecCCCC--cccc-ccccCcc-ccceecccCCCccCCC
Q 039599          149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSS-FENVKGLETLGFSEL--DNLS-DNIGNFK-SFEYMGAHGSAISQLP  223 (293)
Q Consensus       149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~~--~~l~-~~~~~l~-~L~~L~l~~~~~~~~~  223 (293)
                      ......+..+..+++|+++++++|.+....+.. +..++.+..+....+  ..++ ..+..++ .++.+++.+|.++.++
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~  169 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  169 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence            344444566777888888888888774322211 223333433333332  2222 2333333 6777788888777664


Q ss_pred             CcCCCCccCcccccCCccccce-eecCCccCCcCCcc-cCCCCCCcEEeccCCcCCCCch-hHhhcccCCCCC
Q 039599          224 SLSSGLVPLSASLLSGLSLLYW-LHLNNCALTSIPQE-IGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD  293 (293)
Q Consensus       224 ~l~~~l~~l~~~~~~~~~~L~~-L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~l~~~p~-~l~~l~~L~~ld  293 (293)
                      ..          .+ ...++++ +.+++|.++++|.. +..+++|+.|++++|+++.+|. .+..+++|+.++
T Consensus       170 ~~----------~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         170 NC----------AF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             TT----------TT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred             cc----------cc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence            31          02 2233333 35566778877653 6778888888888888887654 366677776653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.9e-17  Score=128.66  Aligned_cols=161  Identities=20%  Similarity=0.265  Sum_probs=80.9

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      ++++|+++++.+..++. +..+++|++|++++|.+.. ++ .++.+++|++|++++|.+. .++ .+..+++|+.|++++
T Consensus        47 ~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTT
T ss_pred             CccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccccc
Confidence            45555555555554432 4555566666666554433 22 2345555555555555433 222 345555566666655


Q ss_pred             CcccccCCCcccccccCceecCCCC-ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCC
Q 039599          172 TTITEQRPSSFENVKGLETLGFSEL-DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNN  250 (293)
Q Consensus       172 n~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~  250 (293)
                      |.+..  ...+.++++++.+.++++ -.-...+..+++|+++++++|.+.+++.            ++++++|++|++++
T Consensus       122 ~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~------------l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         122 NGISD--INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP------------LAGLTKLQNLYLSK  187 (210)
T ss_dssp             SCCCC--CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG------------GTTCTTCCEEECCS
T ss_pred             ccccc--ccccccccccccccccccccccccccccccccccccccccccccccc------------ccCCCCCCEEECCC
Confidence            55432  123444555555555544 1112233344555555555555554432            34555566666666


Q ss_pred             ccCCcCCcccCCCCCCcEEecc
Q 039599          251 CALTSIPQEIGYLSSLEWLHLR  272 (293)
Q Consensus       251 n~i~~l~~~~~~~~~L~~L~l~  272 (293)
                      |.|++++ .+..+++|+.|+++
T Consensus       188 N~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         188 NHISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             SCCCBCG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCh-hhcCCCCCCEEEcc
Confidence            6665554 35556666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=6e-17  Score=128.40  Aligned_cols=182  Identities=20%  Similarity=0.258  Sum_probs=130.2

Q ss_pred             CceEEeecCCcCCcccCC--CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599           71 SPVTIDFTSCINLTDFPH--ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC  148 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  148 (293)
                      +|+.|++.+|. ++.+++  .+.+|++|++++|.+..+++ +..+++++++++++|.... ++ .+..+++|+.+.++++
T Consensus        42 ~L~~L~l~~~~-i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          42 GITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             TCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTS
T ss_pred             CcCEEECCCCC-CCcchhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccc-cc-cccccccccccccccc
Confidence            66777777766 334432  24567777777777766553 6777888888888776542 22 3667778888888777


Q ss_pred             ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCc-cccccccCccccceecccCCCccCCCCcCC
Q 039599          149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELD-NLSDNIGNFKSFEYMGAHGSAISQLPSLSS  227 (293)
Q Consensus       149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~  227 (293)
                      ....  ...+...+.++.+.++++.+...  ..+..+++|+.|+++++. .-...+.++++|+.|++++|.+.+++.   
T Consensus       118 ~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~---  190 (227)
T d1h6ua2         118 QITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---  190 (227)
T ss_dssp             CCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---
T ss_pred             cccc--cchhccccchhhhhchhhhhchh--hhhccccccccccccccccccchhhcccccceecccCCCccCCChh---
Confidence            5443  23355667778888887776432  246677888888888872 222346788899999999999887754   


Q ss_pred             CCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccC
Q 039599          228 GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRG  273 (293)
Q Consensus       228 ~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~  273 (293)
                               ++++++|++|++++|++++++. ++.+++|+.|++++
T Consensus       191 ---------l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 ---------LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             ---------GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             ---------hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence                     5688999999999999999874 88999999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.5e-17  Score=130.37  Aligned_cols=163  Identities=19%  Similarity=0.256  Sum_probs=134.6

Q ss_pred             cCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCce
Q 039599          111 KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLET  190 (293)
Q Consensus       111 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  190 (293)
                      ..+.+|++|++++|.+.. ++ .+..+++|++|++++|.+.+ ++ .++.+++|++|++++|.+++ ++ .+..+++|+.
T Consensus        43 ~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~  116 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (210)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccc
Confidence            346789999999987654 33 37789999999999997664 43 46889999999999999964 33 5788999999


Q ss_pred             ecCCCC-ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEE
Q 039599          191 LGFSEL-DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWL  269 (293)
Q Consensus       191 L~l~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L  269 (293)
                      |+++++ ..-...+..++.++.+++++|.+.+.+.            +..+++|+.+++++|.++++++ +..+++|+.|
T Consensus       117 L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~------------~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L  183 (210)
T d1h6ta2         117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITV------------LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL  183 (210)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG------------GGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccc------------cccccccccccccccccccccc-ccCCCCCCEE
Confidence            999998 2233467788999999999999877643            4577899999999999998765 8899999999


Q ss_pred             eccCCcCCCCchhHhhcccCCCCC
Q 039599          270 HLRGNNLEGLPASIKQISRLESLD  293 (293)
Q Consensus       270 ~l~~n~l~~~p~~l~~l~~L~~ld  293 (293)
                      ++++|+++++| .+..+++|+.||
T Consensus       184 ~Ls~N~i~~l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         184 YLSKNHISDLR-ALAGLKNLDVLE  206 (210)
T ss_dssp             ECCSSCCCBCG-GGTTCTTCSEEE
T ss_pred             ECCCCCCCCCh-hhcCCCCCCEEE
Confidence            99999999987 588899998764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5.2e-17  Score=126.10  Aligned_cols=160  Identities=18%  Similarity=0.277  Sum_probs=118.0

Q ss_pred             CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599           90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL  169 (293)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  169 (293)
                      +.++++|+++++++..++ .++.+++|++|++++|.+... ++ +..+++|++|++++|.... ++ .+..+++|++|++
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCc-cc-ccCCccccccccccccccc-cc-ccccccccccccc
Confidence            346777777777777664 467778888888888766543 32 6778888888888875443 32 4677888888888


Q ss_pred             CCCcccccCCCcccccccCceecCCCC-ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeec
Q 039599          170 GRTTITEQRPSSFENVKGLETLGFSEL-DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL  248 (293)
Q Consensus       170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l  248 (293)
                      +++.....  ..+..+++|+.+++++| -...+.+..+++++.+++.+|.+++++.            ++++++|++|++
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~------------l~~l~~L~~L~l  179 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP------------LANLTTLERLDI  179 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG------------GTTCTTCCEEEC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCcc------------ccCCCCCCEEEC
Confidence            88777432  34667788888888887 1222357788899999999998887754            568899999999


Q ss_pred             CCccCCcCCcccCCCCCCcEE
Q 039599          249 NNCALTSIPQEIGYLSSLEWL  269 (293)
Q Consensus       249 ~~n~i~~l~~~~~~~~~L~~L  269 (293)
                      ++|++++++ .++.+++|+.|
T Consensus       180 s~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         180 SSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CSSCCCCCG-GGGGCTTCSEE
T ss_pred             CCCCCCCCc-cccCCCCCCcC
Confidence            999999886 47788888875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.69  E-value=1.1e-15  Score=128.33  Aligned_cols=221  Identities=18%  Similarity=0.184  Sum_probs=143.0

Q ss_pred             eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEecccccccccCccccCCCCCCEEEeccCcccc
Q 039599           49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLK  128 (293)
Q Consensus        49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~  128 (293)
                      +++|+++++.. +.+|+.  .++|++|++++|. ++.+|..+.+|++|++++|.++.++..   .+.|++|++++|.+. 
T Consensus        40 l~~LdLs~~~L-~~lp~~--~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~-  111 (353)
T d1jl5a_          40 AHELELNNLGL-SSLPEL--PPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-  111 (353)
T ss_dssp             CSEEECTTSCC-SCCCSC--CTTCSEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-
T ss_pred             CCEEEeCCCCC-CCCCCC--CCCCCEEECCCCC-Ccccccchhhhhhhhhhhcccchhhhh---ccccccccccccccc-
Confidence            78999999874 567764  3589999999987 678999999999999999998877642   246999999998765 


Q ss_pred             ccccccccccccceecccccccCCCC------------------ChhhhccccCCceecCCCcccccC------------
Q 039599          129 RVSTSICKLKSLIALSAYGCLNLERF------------------PESLEKMEHLNQINLGRTTITEQR------------  178 (293)
Q Consensus       129 ~~~~~l~~l~~L~~L~l~~~~~~~~~------------------~~~~~~l~~L~~L~l~~n~~~~~~------------  178 (293)
                      .+|. +..+++|++|+++++......                  ...+..++.++.+++++|......            
T Consensus       112 ~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~  190 (353)
T d1jl5a_         112 KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG  190 (353)
T ss_dssp             SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred             cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccc
Confidence            4554 568899999999887654211                  122344566677777666543211            


Q ss_pred             ------CCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCC-------------CccCc----
Q 039599          179 ------PSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSG-------------LVPLS----  233 (293)
Q Consensus       179 ------~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~-------------l~~l~----  233 (293)
                            ...+..++.|+.+.++.+  ...+.   ...++..+.+.++.+...+.....             +..+.    
T Consensus       191 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~  267 (353)
T d1jl5a_         191 NNILEELPELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY  267 (353)
T ss_dssp             SSCCSSCCCCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCC
T ss_pred             ccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccchhc
Confidence                  011233456666666655  22221   122333333333333322111100             00010    


Q ss_pred             ---c-----c-ccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHh
Q 039599          234 ---A-----S-LLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIK  284 (293)
Q Consensus       234 ---~-----~-~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~  284 (293)
                         .     . ....+++|++|++++|.|+.+|.   .+++|+.|++++|+++.+|..+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~L~~l~~~~~  324 (353)
T d1jl5a_         268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPELPQ  324 (353)
T ss_dssp             EEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCCT
T ss_pred             ccccccCccccccccCCCCCEEECCCCccCcccc---ccCCCCEEECCCCcCCccccccC
Confidence               0     0 12345789999999999999885   36889999999999999886443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.7e-16  Score=122.49  Aligned_cols=122  Identities=20%  Similarity=0.187  Sum_probs=66.1

Q ss_pred             EEeecCCcCCcccCCCC-CCccEEecccccccc-cCc-cccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599           74 TIDFTSCINLTDFPHIS-GNITRLYLDETAIEE-VPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN  150 (293)
Q Consensus        74 ~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~-l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  150 (293)
                      +++.+++. ++.+|..+ .++++|++++|.++. ++. .|.++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        12 ~v~Cs~~~-L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          12 TVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             EEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             EEEEeCCC-cCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            44555444 44555443 256666666666643 222 445566666666666655554455555556666666666655


Q ss_pred             CCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599          151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       151 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  196 (293)
                      ....+..|..+++|++|++++|.++...+..|..+++|+++++++|
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            4444445555666666666666665444444555555555555444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.5e-17  Score=135.03  Aligned_cols=148  Identities=12%  Similarity=0.215  Sum_probs=73.4

Q ss_pred             cCceEEeecCCcCCcc----cCCCCCCccEEeccccccc-ccCccccCCCCCCEEEeccCccccc--cccccccccccce
Q 039599           70 VSPVTIDFTSCINLTD----FPHISGNITRLYLDETAIE-EVPSSIKCLTNLKLLRINRCTRLKR--VSTSICKLKSLIA  142 (293)
Q Consensus        70 ~~L~~L~l~~~~~~~~----~~~~~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~  142 (293)
                      .+|++||+++|.+...    +.....+|++|+++++.++ ..+..++.+++|++|++++|.....  +......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            3677777776654322    1233456666666666654 3334455666666666666543321  1112234566666


Q ss_pred             ecccccccCCC--CChhhhc-cccCCceecCCCc--cccc-CCCcccccccCceecCCCC----ccccccccCcccccee
Q 039599          143 LSAYGCLNLER--FPESLEK-MEHLNQINLGRTT--ITEQ-RPSSFENVKGLETLGFSEL----DNLSDNIGNFKSFEYM  212 (293)
Q Consensus       143 L~l~~~~~~~~--~~~~~~~-l~~L~~L~l~~n~--~~~~-~~~~~~~~~~L~~L~l~~~----~~l~~~~~~l~~L~~L  212 (293)
                      |++++|.....  +...+.. .++|+.|+++++.  +++. +...+..+++|+.|++++|    +.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            66666533211  1112222 2456666666542  2221 1112234566666666655    1233344555666666


Q ss_pred             cccCC
Q 039599          213 GAHGS  217 (293)
Q Consensus       213 ~l~~~  217 (293)
                      ++++|
T Consensus       206 ~L~~C  210 (284)
T d2astb2         206 SLSRC  210 (284)
T ss_dssp             ECTTC
T ss_pred             ECCCC
Confidence            66654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=5.2e-16  Score=119.65  Aligned_cols=172  Identities=16%  Similarity=0.176  Sum_probs=135.1

Q ss_pred             CccEEecccccccccCccccCCCCCCEEEeccCcccccc-ccccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599           92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRV-STSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG  170 (293)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  170 (293)
                      ..+.++.++++++.+|+.+.  +++++|++++|.+.... +..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            45688999999999998764  68999999999987644 4567899999999999998888888899999999999999


Q ss_pred             CCcccccCCCcccccccCceecCCCC--ccc-cccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceee
Q 039599          171 RTTITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLH  247 (293)
Q Consensus       171 ~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~  247 (293)
                      +|.++...+..|.++++|++|++++|  ..+ +..+..+++|+++++++|.+.....+.         ++  ...++.+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~---------~~--~~~l~~~~  155 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA---------WF--AEWLRKKS  155 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH---------HH--HHHHHHHC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH---------HH--hhhhhhhc
Confidence            99998777778999999999999999  444 446788999999999999887663210         01  12245555


Q ss_pred             cCCccCCc-CCcccCCCCCCcEEeccCCcCCCC
Q 039599          248 LNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGL  279 (293)
Q Consensus       248 l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~  279 (293)
                      +..+.++. .|.   .+..++.++++.|+++-.
T Consensus       156 l~~~~~~c~~p~---~l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         156 LNGGAARCGAPS---KVRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             CSGGGCBBCSST---TTTTSBGGGSCTTTCCCC
T ss_pred             ccCCCeEeCCCh---hhcCCEeeecCHhhCcCC
Confidence            66666554 443   355667778888888743

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.2e-15  Score=117.64  Aligned_cols=216  Identities=16%  Similarity=0.176  Sum_probs=143.3

Q ss_pred             EEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCC----CCCCccEEecccccccc-cCc-cccCCCCCCEEEeccC
Q 039599           51 LLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPH----ISGNITRLYLDETAIEE-VPS-SIKCLTNLKLLRINRC  124 (293)
Q Consensus        51 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~~~~-l~~-~~~~l~~L~~L~l~~~  124 (293)
                      .+++++.. +..+|..+. .++++|++++|. ++.+|.    .+.+|++|++++|.+.. ++. .|.+++.++++.+..+
T Consensus        12 ~i~c~~~~-l~~iP~~l~-~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESK-VTEIPSDLP-RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCS-CSSCCSCSC-SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCC-CCCcCCCCC-CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            34444433 335565432 378899999888 455553    24578888999888754 443 6788899999988764


Q ss_pred             -ccccccccccccccccceecccccccCCCCC-hhhhccccCCceecCCCcccccCCCccccc-ccCceecCCCC--ccc
Q 039599          125 -TRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKMEHLNQINLGRTTITEQRPSSFENV-KGLETLGFSEL--DNL  199 (293)
Q Consensus       125 -~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~~--~~l  199 (293)
                       ......+..+.++++|+++++++|.+....+ ..+..++.+..+...++.+....+..|..+ ..++.++++++  ..+
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence             4444445667889999999999986653222 233445556666667777755555556554 47888888887  555


Q ss_pred             cccccCcccccee-cccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcc-cCCCCCCcEEeccCCcCC
Q 039599          200 SDNIGNFKSFEYM-GAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE-IGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       200 ~~~~~~l~~L~~L-~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~l~  277 (293)
                      +........+.++ .+.+|.++.+|..          .|.++++|++|++++|+|+.+|.. +..+++|+.+++.  .++
T Consensus       169 ~~~~~~~~~l~~~~~l~~n~l~~l~~~----------~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~--~l~  236 (242)
T d1xwdc1         169 HNCAFNGTQLDELNLSDNNNLEELPND----------VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLK  236 (242)
T ss_dssp             CTTTTTTCCEEEEECTTCTTCCCCCTT----------TTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE--SSS
T ss_pred             ccccccchhhhccccccccccccccHH----------HhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC--CCC
Confidence            5555566666555 5677888887541          267889999999999999998753 5566666655543  455


Q ss_pred             CCch
Q 039599          278 GLPA  281 (293)
Q Consensus       278 ~~p~  281 (293)
                      .+|.
T Consensus       237 ~lp~  240 (242)
T d1xwdc1         237 KLPT  240 (242)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            5553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.8e-15  Score=113.09  Aligned_cols=124  Identities=18%  Similarity=0.202  Sum_probs=63.7

Q ss_pred             cccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCccccccccCccccceeccc
Q 039599          136 KLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAH  215 (293)
Q Consensus       136 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~  215 (293)
                      +..++++|++++|.+. .++..+..+++|++|++++|.+..                      + +.+..+++|++|+++
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~----------------------l-~~~~~l~~L~~L~ls   71 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK----------------------L-DGFPLLRRLKTLLVN   71 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE----------------------E-CCCCCCSSCCEEECC
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc----------------------c-CCcccCcchhhhhcc
Confidence            4445555555555332 233333445555555555555532                      2 123445555555555


Q ss_pred             CCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc--ccCCCCCCcEEeccCCcCCCCch----hHhhcccC
Q 039599          216 GSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ--EIGYLSSLEWLHLRGNNLEGLPA----SIKQISRL  289 (293)
Q Consensus       216 ~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~--~~~~~~~L~~L~l~~n~l~~~p~----~l~~l~~L  289 (293)
                      +|.+..+|.-          .+..+++|++|++++|.|+++++  .+..+++|+.+++++|+++..|.    .+..+|+|
T Consensus        72 ~N~i~~l~~~----------~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L  141 (162)
T d1a9na_          72 NNRICRIGEG----------LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV  141 (162)
T ss_dssp             SSCCCEECSC----------HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred             cccccCCCcc----------ccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCc
Confidence            5555554220          12345566666666666665442  35556666666666666655442    34556666


Q ss_pred             CCCC
Q 039599          290 ESLD  293 (293)
Q Consensus       290 ~~ld  293 (293)
                      +.||
T Consensus       142 ~~LD  145 (162)
T d1a9na_         142 RVLD  145 (162)
T ss_dssp             SEET
T ss_pred             CeeC
Confidence            6554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.4e-14  Score=101.81  Aligned_cols=113  Identities=20%  Similarity=0.260  Sum_probs=67.0

Q ss_pred             ceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCcccc
Q 039599          166 QINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLL  243 (293)
Q Consensus       166 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L  243 (293)
                      +|++++|.++. ++ .+..+++|++|++++|  ..+|..++.+++|+.|++++|.++++|.            ++.+++|
T Consensus         2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~------------~~~l~~L   67 (124)
T d1dcea3           2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG------------VANLPRL   67 (124)
T ss_dssp             EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG------------GTTCSSC
T ss_pred             EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc------------ccccccc
Confidence            34444444431 22 2444445555555544  3444445555566666666666666544            4567778


Q ss_pred             ceeecCCccCCcCC--cccCCCCCCcEEeccCCcCCC---Cchh-HhhcccCCCC
Q 039599          244 YWLHLNNCALTSIP--QEIGYLSSLEWLHLRGNNLEG---LPAS-IKQISRLESL  292 (293)
Q Consensus       244 ~~L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~l~~---~p~~-l~~l~~L~~l  292 (293)
                      ++|++++|.|++++  ..+..+++|+.|++++|++++   .+.. ...+|+|+.+
T Consensus        68 ~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            88888888887755  346778888888888888764   3333 3346766643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.4e-16  Score=126.54  Aligned_cols=229  Identities=17%  Similarity=0.236  Sum_probs=152.9

Q ss_pred             EEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCC--CCCCccEEeccccccc--ccCccccCCCCCCEEEeccCc
Q 039599           50 QLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPH--ISGNITRLYLDETAIE--EVPSSIKCLTNLKLLRINRCT  125 (293)
Q Consensus        50 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~  125 (293)
                      +.+|++++.........+.......+.+...........  ...+|++|+++++.++  .+...+..+++|++|++++|.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~   82 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR   82 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB
T ss_pred             CEEECCCCCCCchHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC
Confidence            357777765432211111111334445544432222222  2348999999998875  344557889999999999998


Q ss_pred             cccccccccccccccceecccccccCCC--CChhhhccccCCceecCCCc-ccccC-CCcccc-cccCceecCCCC-c--
Q 039599          126 RLKRVSTSICKLKSLIALSAYGCLNLER--FPESLEKMEHLNQINLGRTT-ITEQR-PSSFEN-VKGLETLGFSEL-D--  197 (293)
Q Consensus       126 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~-~~~~~-~~~~~~-~~~L~~L~l~~~-~--  197 (293)
                      .....+..+..+++|++|++++|...+.  +......+++|++|++++|. +++.. ...+.. .++|+.|.++++ .  
T Consensus        83 l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i  162 (284)
T d2astb2          83 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL  162 (284)
T ss_dssp             CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred             CCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccc
Confidence            7776777788899999999999754431  22234678999999999964 43321 122333 478999999986 2  


Q ss_pred             ---cccccccCccccceecccCCC-ccCC-CCcCCCCccCcccccCCccccceeecCCc-cCCc-CCcccCCCCCCcEEe
Q 039599          198 ---NLSDNIGNFKSFEYMGAHGSA-ISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNC-ALTS-IPQEIGYLSSLEWLH  270 (293)
Q Consensus       198 ---~l~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n-~i~~-l~~~~~~~~~L~~L~  270 (293)
                         .+......+++|++|++++|. +++. ..           .+..+++|++|++++| .|++ ....++.+++|+.|+
T Consensus       163 ~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~-----------~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~  231 (284)
T d2astb2         163 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-----------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  231 (284)
T ss_dssp             CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-----------GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccCCCchhhh-----------hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEe
Confidence               233345678999999999875 4432 11           2567889999999997 6776 445678899999999


Q ss_pred             ccCCcCCC--CchhHhhcccCC
Q 039599          271 LRGNNLEG--LPASIKQISRLE  290 (293)
Q Consensus       271 l~~n~l~~--~p~~l~~l~~L~  290 (293)
                      +++| +++  ++.....+|+|+
T Consensus       232 l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         232 VFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CTTS-SCTTCHHHHHHHSTTSE
T ss_pred             eeCC-CCHHHHHHHHHhCcccc
Confidence            9998 543  544445577765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=1.3e-15  Score=128.06  Aligned_cols=242  Identities=11%  Similarity=0.114  Sum_probs=152.4

Q ss_pred             hhccCCccccEEEEeccceeeecccceEEEeccCCcccccCCCCC-CCcCceEEeecCCcCCcc---cC----------C
Q 039599           23 RAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL-HFVSPVTIDFTSCINLTD---FP----------H   88 (293)
Q Consensus        23 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~---~~----------~   88 (293)
                      ..+..+..++.|++++|.+....              ...+...+ ..++|+.++++++.....   .+          .
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~--------------~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~   90 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEA--------------ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL   90 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHH--------------HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT
T ss_pred             HHHhhCCCCCEEECcCCcCCHHH--------------HHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHh
Confidence            35666778888888887664221              00111112 223666777766542211   01          1


Q ss_pred             CCCCccEEecccccccc-----cCccccCCCCCCEEEeccCccccccccc-------------cccccccceeccccccc
Q 039599           89 ISGNITRLYLDETAIEE-----VPSSIKCLTNLKLLRINRCTRLKRVSTS-------------ICKLKSLIALSAYGCLN  150 (293)
Q Consensus        89 ~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------l~~l~~L~~L~l~~~~~  150 (293)
                      ..++|++|++++|.++.     +...+..+++|++|++++|.+.......             ....+.|+.+.+++|.+
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            23468888888877653     3334556788899999887653321111             12356788888888765


Q ss_pred             CC----CCChhhhccccCCceecCCCccccc-----CCCcccccccCceecCCCC-------ccccccccCccccceecc
Q 039599          151 LE----RFPESLEKMEHLNQINLGRTTITEQ-----RPSSFENVKGLETLGFSEL-------DNLSDNIGNFKSFEYMGA  214 (293)
Q Consensus       151 ~~----~~~~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~~-------~~l~~~~~~l~~L~~L~l  214 (293)
                      ..    .+...+..++.+++|++++|.+...     +...+...++|+.|++++|       ..+...+..+++|++|++
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            42    2334456778899999999987542     2344667788999999988       224456778899999999


Q ss_pred             cCCCccCC--CCcCCCCccCcccccCCccccceeecCCccCCc-----CCcccC-CCCCCcEEeccCCcCCCCchhHh
Q 039599          215 HGSAISQL--PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-----IPQEIG-YLSSLEWLHLRGNNLEGLPASIK  284 (293)
Q Consensus       215 ~~~~~~~~--~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~-~~~~L~~L~l~~n~l~~~p~~l~  284 (293)
                      ++|.+++.  ..+...+.      -.....|++|++++|.|++     +...+. .+++|+.|++++|.+......+.
T Consensus       251 s~n~i~~~g~~~l~~~l~------~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~~~~  322 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAFS------KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD  322 (344)
T ss_dssp             TTCCCCHHHHHHHHHHHH------TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHH
T ss_pred             hcCccCchhhHHHHHHhh------hccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcchHHH
Confidence            99988754  11211110      0123579999999999876     333343 57899999999999986444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-13  Score=103.25  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=50.8

Q ss_pred             CceEEeecCCcCCcccCCC---CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccc
Q 039599           71 SPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYG  147 (293)
Q Consensus        71 ~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  147 (293)
                      ++++|++++|. ++.++..   +.+|+.|++++|.+..++ .+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        19 ~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          19 RDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             SCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             cCcEEECCCCC-CCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            55666666665 3333322   335555566666555553 355555566666655554332222233455555555555


Q ss_pred             cccCCCCC-hhhhccccCCceecCCCcc
Q 039599          148 CLNLERFP-ESLEKMEHLNQINLGRTTI  174 (293)
Q Consensus       148 ~~~~~~~~-~~~~~l~~L~~L~l~~n~~  174 (293)
                      |.+...-. ..+..+++|+++++++|.+
T Consensus        97 N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          97 NSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ccccccccccccccccccchhhcCCCcc
Confidence            54332111 2344555555555555555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=4.4e-13  Score=95.15  Aligned_cols=101  Identities=18%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             eEEeecCCcCCcccCC--CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599           73 VTIDFTSCINLTDFPH--ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN  150 (293)
Q Consensus        73 ~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  150 (293)
                      +.|++++|. ++.++.  .+.+|++|++++|.+..+|+.++.+++|++|++++|.+.. ++ .+..+++|++|++++|.+
T Consensus         1 R~L~Ls~n~-l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCC-CCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCcc
Confidence            356666666 334432  2346777777777777777777777777777777776543 33 366777777777777755


Q ss_pred             CCCC-ChhhhccccCCceecCCCcccc
Q 039599          151 LERF-PESLEKMEHLNQINLGRTTITE  176 (293)
Q Consensus       151 ~~~~-~~~~~~l~~L~~L~l~~n~~~~  176 (293)
                      .... ...+..+++|+++++++|.+++
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            5322 2456677777777777777643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=1.7e-15  Score=117.12  Aligned_cols=112  Identities=27%  Similarity=0.264  Sum_probs=57.2

Q ss_pred             cccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCccccccccCcccc
Q 039599          130 VSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSF  209 (293)
Q Consensus       130 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~L  209 (293)
                      ++..+..+++|++|++++|.+. .++ .+..+++|++|++++|.++ .++..+..+++|+.|++                
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l----------------  100 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI----------------  100 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEEC----------------
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccc----------------
Confidence            3344555666666666665443 332 3555666666666666553 23333333344555554                


Q ss_pred             ceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCC--cccCCCCCCcEEeccCCcCC
Q 039599          210 EYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP--QEIGYLSSLEWLHLRGNNLE  277 (293)
Q Consensus       210 ~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~l~  277 (293)
                           ++|.++.++.            +..+++|+.|++++|.|++++  ..+..+++|+.|++++|++.
T Consensus       101 -----~~N~i~~l~~------------~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         101 -----SYNQIASLSG------------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             -----SEEECCCHHH------------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             -----cccccccccc------------ccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence                 4444443321            234455566666666555543  23555666666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.2e-14  Score=124.46  Aligned_cols=98  Identities=8%  Similarity=0.097  Sum_probs=66.7

Q ss_pred             eEEEEeecCcccceeech-hhccCCccccEEEEeccceeeec--c--------cceEEEeccCCcccc----cCCCCCCC
Q 039599            5 IESIFLNLSTIKGINLNL-RAFSNMSNLRVLKFYIPEISVHM--S--------IEEQLLDSKGCKILR----SFPSNLHF   69 (293)
Q Consensus         5 ~~~i~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~--------~~l~~L~l~~~~~~~----~~~~~~~~   69 (293)
                      ++.+  |+++++..+.+. ..+..++++++|++++|.+....  .        -.|++|++++|.+..    .+...+..
T Consensus         4 l~~l--d~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           4 IQSL--DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEE--EEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCEE--EeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4555  999887777653 35778899999999999876321  1        129999999987642    12222222


Q ss_pred             --cCceEEeecCCcCCcc----cC---CCCCCccEEeccccccc
Q 039599           70 --VSPVTIDFTSCINLTD----FP---HISGNITRLYLDETAIE  104 (293)
Q Consensus        70 --~~L~~L~l~~~~~~~~----~~---~~~~~L~~L~l~~~~~~  104 (293)
                        .+|++|++++|.+...    ++   ....+|++|++++|.++
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence              3799999999985432    12   23568999999888764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.24  E-value=6.9e-13  Score=111.16  Aligned_cols=216  Identities=16%  Similarity=0.128  Sum_probs=146.4

Q ss_pred             CcCceEEeecCCcCCcc-------cCCCCCCccEEecccccccc-----------cCccccCCCCCCEEEeccCccccc-
Q 039599           69 FVSPVTIDFTSCINLTD-------FPHISGNITRLYLDETAIEE-----------VPSSIKCLTNLKLLRINRCTRLKR-  129 (293)
Q Consensus        69 ~~~L~~L~l~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~-----------l~~~~~~l~~L~~L~l~~~~~~~~-  129 (293)
                      ..+++.|++++|.+...       ......+|+.++++++....           +...+..+++|+.|++++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            34788999999875332       23345689999998765432           223456788999999999876553 


Q ss_pred             ---cccccccccccceecccccccCCC----CChh---------hhccccCCceecCCCcccccCC----CcccccccCc
Q 039599          130 ---VSTSICKLKSLIALSAYGCLNLER----FPES---------LEKMEHLNQINLGRTTITEQRP----SSFENVKGLE  189 (293)
Q Consensus       130 ---~~~~l~~l~~L~~L~l~~~~~~~~----~~~~---------~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~  189 (293)
                         +...+...++|++|++++|.+...    +...         ....+.|+.+.+++|.+.....    ..+...+.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               234455678999999999865421    1111         1345679999999998754322    2345678899


Q ss_pred             eecCCCCc--------cccccccCccccceecccCCCccCC--CCcCCCCccCcccccCCccccceeecCCccCCc----
Q 039599          190 TLGFSELD--------NLSDNIGNFKSFEYMGAHGSAISQL--PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS----  255 (293)
Q Consensus       190 ~L~l~~~~--------~l~~~~~~l~~L~~L~l~~~~~~~~--~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~----  255 (293)
                      .++++.|.        .+...+...+.|++|++++|.++..  ..+..        .+..+++|++|++++|.|++    
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~--------~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--------ALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH--------HGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccccccccc--------cccccccchhhhhhcCccCchhhH
Confidence            99999881        1334567788999999999987543  11110        24577899999999999986    


Q ss_pred             -CCcccC--CCCCCcEEeccCCcCCC-----CchhHh-hcccCCCC
Q 039599          256 -IPQEIG--YLSSLEWLHLRGNNLEG-----LPASIK-QISRLESL  292 (293)
Q Consensus       256 -l~~~~~--~~~~L~~L~l~~n~l~~-----~p~~l~-~l~~L~~l  292 (293)
                       +-..+.  ..+.|+.|++++|+++.     +...+. .+++|+.|
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L  307 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL  307 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEE
Confidence             222333  35789999999999874     344443 35667654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.4e-13  Score=119.21  Aligned_cols=73  Identities=15%  Similarity=0.125  Sum_probs=48.9

Q ss_pred             eecCcccceeec----hhhccCCccccEEEEeccceeee-----------cccceEEEeccCCccccc----CCCCC-CC
Q 039599           10 LNLSTIKGINLN----LRAFSNMSNLRVLKFYIPEISVH-----------MSIEEQLLDSKGCKILRS----FPSNL-HF   69 (293)
Q Consensus        10 l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~-----------~~~~l~~L~l~~~~~~~~----~~~~~-~~   69 (293)
                      +++++|.....+    +.++..+++|++|++++|.+...           ....|++|++++|.+...    ++..+ .+
T Consensus        32 L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~  111 (460)
T d1z7xw1          32 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL  111 (460)
T ss_dssp             EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC
T ss_pred             EEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcc
Confidence            377777544322    24567889999999999887521           112499999999986432    22223 34


Q ss_pred             cCceEEeecCCcC
Q 039599           70 VSPVTIDFTSCIN   82 (293)
Q Consensus        70 ~~L~~L~l~~~~~   82 (293)
                      ++|++|++++|.+
T Consensus       112 ~~L~~L~L~~N~i  124 (460)
T d1z7xw1         112 PTLQELHLSDNLL  124 (460)
T ss_dssp             TTCCEEECCSSBC
T ss_pred             ccccccccccccc
Confidence            5899999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=2.7e-13  Score=104.50  Aligned_cols=112  Identities=21%  Similarity=0.246  Sum_probs=66.5

Q ss_pred             ccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcc
Q 039599          103 IEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSF  182 (293)
Q Consensus       103 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  182 (293)
                      +.+++..+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++.....+++|++|++++|.++..  +.+
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~  111 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGI  111 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHH
T ss_pred             hhhhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccc
Confidence            45555667777777777777776543 33 4667777777887777543 4555455566778888887777532  235


Q ss_pred             cccccCceecCCCC--cccc--ccccCccccceecccCCCc
Q 039599          183 ENVKGLETLGFSEL--DNLS--DNIGNFKSFEYMGAHGSAI  219 (293)
Q Consensus       183 ~~~~~L~~L~l~~~--~~l~--~~~~~l~~L~~L~l~~~~~  219 (293)
                      ..+++|+.|++++|  ..++  ..+..+++|+.|++++|++
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            55666666666655  2222  1334444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.5e-10  Score=82.61  Aligned_cols=103  Identities=16%  Similarity=0.072  Sum_probs=62.0

Q ss_pred             ccEEecccccccccCccccCCCCCCEEEeccCcccccc-ccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599           93 ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRV-STSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR  171 (293)
Q Consensus        93 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  171 (293)
                      .+.++.+++++.+.|..+..+++|++|++++++....+ +..+..+++|+.|++++|.+....+..|..+++|++|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34456666666666666666777777777655433333 34566677777777777765554456667777777777777


Q ss_pred             CcccccCCCcccccccCceecCCCC
Q 039599          172 TTITEQRPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       172 n~~~~~~~~~~~~~~~L~~L~l~~~  196 (293)
                      |.++ .++.......+|+.|++++|
T Consensus        90 N~l~-~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          90 NALE-SLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSS
T ss_pred             CCCc-ccChhhhccccccccccCCC
Confidence            7774 33333223334666666555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.3e-09  Score=80.14  Aligned_cols=86  Identities=12%  Similarity=0.059  Sum_probs=49.3

Q ss_pred             cccccceecccccccCCCCChhhhccccCCceecCCC-cccccCCCcccccccCceecCCCC--ccc-cccccCccccce
Q 039599          136 KLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT-TITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEY  211 (293)
Q Consensus       136 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~  211 (293)
                      .+...+.++..++... ..|..+..++++++|+++++ .++...+..|..+++|+.|++++|  ..+ +..+..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3344455666665443 34555666777778877655 365444445666666666666666  333 334555555555


Q ss_pred             ecccCCCccCC
Q 039599          212 MGAHGSAISQL  222 (293)
Q Consensus       212 L~l~~~~~~~~  222 (293)
                      |++++|.+..+
T Consensus        85 L~Ls~N~l~~l   95 (156)
T d2ifga3          85 LNLSFNALESL   95 (156)
T ss_dssp             EECCSSCCSCC
T ss_pred             eeccCCCCccc
Confidence            55555555555

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.8e-08  Score=74.34  Aligned_cols=82  Identities=24%  Similarity=0.229  Sum_probs=49.8

Q ss_pred             cCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCCC-c-
Q 039599          204 GNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEGL-P-  280 (293)
Q Consensus       204 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~~-p-  280 (293)
                      ..++.|++|++++|.++.++.+..        .+..+++|+.|++++|.|+++++ .......|+.+++++|++... . 
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~--------~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSS--------IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGT--------HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHH--------HHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCccc
Confidence            456677777777777776632110        13356777777777777777554 222344677777777777642 1 


Q ss_pred             ------hhHhhcccCCCCC
Q 039599          281 ------ASIKQISRLESLD  293 (293)
Q Consensus       281 ------~~l~~l~~L~~ld  293 (293)
                            ..+..+|+|+.||
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence                  2244567777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.8e-08  Score=72.47  Aligned_cols=69  Identities=14%  Similarity=0.073  Sum_probs=41.9

Q ss_pred             cccCCCCCCEEEeccCccccc--cccccccccccceecccccccCCCCChhhhccccCCceecCCCccccc
Q 039599          109 SIKCLTNLKLLRINRCTRLKR--VSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQ  177 (293)
Q Consensus       109 ~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  177 (293)
                      ....+++|++|++++|.+...  ++..+..+++|+.|++++|.+...-+-......+|+++++++|.+...
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            345677777788887766542  233455677777777777755432221223344677777777777543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.74  E-value=5e-06  Score=61.03  Aligned_cols=66  Identities=9%  Similarity=-0.008  Sum_probs=31.6

Q ss_pred             cccCCCCCCEEEeccCccccccc----cccccccccceecccccccCC----CCChhhhccccCCceecCCCcc
Q 039599          109 SIKCLTNLKLLRINRCTRLKRVS----TSICKLKSLIALSAYGCLNLE----RFPESLEKMEHLNQINLGRTTI  174 (293)
Q Consensus       109 ~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~  174 (293)
                      .+...++|++|++++|.+.....    ..+...+.|++|++++|.+..    .+...+...+.|++|++++|..
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            34444556666666555432211    223334555566665554432    1223344445566666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.70  E-value=7.9e-06  Score=59.95  Aligned_cols=86  Identities=17%  Similarity=0.135  Sum_probs=48.6

Q ss_pred             cCCCCCCEEEeccCc-cccc----cccccccccccceecccccccCC----CCChhhhccccCCceecCCCcccccCCC-
Q 039599          111 KCLTNLKLLRINRCT-RLKR----VSTSICKLKSLIALSAYGCLNLE----RFPESLEKMEHLNQINLGRTTITEQRPS-  180 (293)
Q Consensus       111 ~~l~~L~~L~l~~~~-~~~~----~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~-  180 (293)
                      .+.++|++|++++++ +...    +...+...+.|++|++++|.+..    .+.+.+...+.|++|++++|.+++.... 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            345778888887643 3221    22345556677788887776542    3344555667777777777776542221 


Q ss_pred             ---cccccccCceecCCCC
Q 039599          181 ---SFENVKGLETLGFSEL  196 (293)
Q Consensus       181 ---~~~~~~~L~~L~l~~~  196 (293)
                         .+...++|+.|+++++
T Consensus        92 l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCC
Confidence               2333445555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.20  E-value=6e-05  Score=54.92  Aligned_cols=39  Identities=18%  Similarity=0.189  Sum_probs=16.6

Q ss_pred             cccccceecccccccCC----CCChhhhccccCCceecCCCcc
Q 039599          136 KLKSLIALSAYGCLNLE----RFPESLEKMEHLNQINLGRTTI  174 (293)
Q Consensus       136 ~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~  174 (293)
                      ..+.|++|++++|.+..    .+.+.+...+.++.+++++|.+
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            34444445554443321    1222333344455555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.11  E-value=5.4e-05  Score=55.18  Aligned_cols=88  Identities=15%  Similarity=0.141  Sum_probs=42.8

Q ss_pred             cccCCCCCCEEEeccCcccccc----ccccccccccceecccccccCC----CCChhhhccccCCceecC--CCccccc-
Q 039599          109 SIKCLTNLKLLRINRCTRLKRV----STSICKLKSLIALSAYGCLNLE----RFPESLEKMEHLNQINLG--RTTITEQ-  177 (293)
Q Consensus       109 ~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~--~n~~~~~-  177 (293)
                      ++...++|++|++++|.+....    ...+...+.++.+++++|....    .+.+.+...+.|+.+++.  +|.+.+. 
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            4445566666666666543322    1233345566666666664432    123344555566654443  3444221 


Q ss_pred             ---CCCcccccccCceecCCCC
Q 039599          178 ---RPSSFENVKGLETLGFSEL  196 (293)
Q Consensus       178 ---~~~~~~~~~~L~~L~l~~~  196 (293)
                         +.+.+...++|+.|++..+
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCCCcCEEeCcCC
Confidence               1222334555666655543