Citrus Sinensis ID: 039618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSGWKSGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATSFRINSHGFNYQFDRGENYQGSLK
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccHHHHHcccHcccccccccccEEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
msrpgdwncrscnhlnfqrrdscqrcgepragdrsgdygsfggrgsssfgfstgpdvrpgdwycsvgncgahnfasrsscfkcgatkddsaggfgeggdmprmrgfrfggggsssssrsgwksgdwiCTLGLVAMSTILQAEQNVLDAVHQGILQATSFrinshgfnyqfdrgenyqgslk
Flexible Loop (DISEMBL)
msrpgdwncrscnhlnfqrrdscqRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGgggsssssrsgwKSGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATSFRINSHGFnyqfdrgenyqgslk
Low Complexity Region (SEG)
MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAgdrsgdygsfggrgsssfgfsTGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMrgfrfggggsssssrsgWKSGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATSFRINSHGFNYQFDRGENYQGSLK
Disordered region (IsUnstruct)
********CRSCNHLN***************************************DVRPGDWYCSVGNCGAHNFASRSSCFKCGA***********************************WKSGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATSFRINSHGFNYQFD**********
Disordered Region (DISOPRED)
MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFASRSSCFK*******************************************WICTLGLVAMSTILQA****************************************
Disordered Region (DISEMBL)
MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRF************WKSGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATSFRINSHGFNYQFDRG********
Disordered Region (DISPRO)
*****DWNCRSCNHLNFQRRDSCQRCGE****************************VRPGDWYCSVGNCGAHNFASRSSCFKCGAT**********************************WKSGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATSFRINSHGFNYQFDR*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSGWKSGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATSFRINSHGFNYQFDRGENYQGSLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
O13801	604	Uncharacterized RNA-bindi	yes	no	0.491	0.147	0.323	5e-08
P49792	3224	E3 SUMO-protein ligase Ra	yes	no	0.679	0.038	0.256	0.0002
Q5ZLX5	334	Zinc finger Ran-binding d	yes	no	0.419	0.227	0.325	0.0004
P32770	719	Asparagine-rich protein O	yes	no	0.138	0.034	0.666	0.0007
Q7M760	708	Ubiquitin thioesterase Zr	yes	no	0.447	0.114	0.279	0.0007

>sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.04c PE=1 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 50/136 (36%), Gaps = 47/136 (34%)

Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSG-----------DYGSFGGRGSSSFGF 51
           RPGDWNC  C   NFQRR SC RC  P     S             YG+  G GSS F  
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 52  STGPDV------------------------------------RPGDWYCSVGNCGAHNFA 75
           + G  V                                    R GDW C    CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462

Query: 76  SRSSCFKCGATKDDSA 91
               C +CGA++  +A
Sbjct: 463 KNVCCLRCGASRATAA 478

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 25/148 (16%)

Query: 3    RPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFG-----------F 51
            + G W+C  C   N      C  C   ++ ++SG   SF  + S  FG           F
Sbjct: 1415 KEGHWDCSICLVRNEPTVSRCIACQNTKSANKSGS--SFVHQASFKFGQGDLPKPINSDF 1472

Query: 52   STGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGG 111
             +    + G W CS   C   N  S + C  C   +  S         +P    F+FG  
Sbjct: 1473 RSVFSTKEGQWDCSA--CLVQNEGSSTKCAACQNPRKQSL----PATSIPTPASFKFGTS 1526

Query: 112  GSSSSSRSGW------KSGDWICTLGLV 133
             +S + +SG+      K G W C+  LV
Sbjct: 1527 ETSKTLKSGFEDMFAKKEGQWDCSSCLV 1554

E3 SUMO-protein ligase which facilitates SUMO1 and SUMO2 conjugation by UBE2I. Involved in transport factor (Ran-GTP, karyopherin)-mediated protein import via the F-G repeat-containing domain which acts as a docking site for substrates. Could also have isomerase or chaperone activity and may bind RNA or DNA. Component of the nuclear export pathway. Specific docking site for the nuclear export factor exportin-1.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus GN=ZRANB2 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 13/89 (14%)

Query: 5  GDWNC--RSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVR---- 58
          GDW C  + C ++NF RR SC RCG  +  +           G +  G +     R    
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTE-----AKMMKAGGTEIGKTLAEKSRGLFS 65

Query: 59 PGDWYCSVGNCGAHNFASRSSCFKCGATK 87
            DW C    CG  N+A RS C  C   K
Sbjct: 66 ANDWQCKT--CGNVNWARRSECNMCNTPK 92

May regulate alternative splicing by interfering with constitutive 5'-splice site selection.

Gallus gallus (taxid: 9031)

>sp|P32770|NRP1_YEAST Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRP1 PE=1 SV=2

 Score = 43.9 bits (102), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 19/27 (70%)

Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGEP 29
           RPGDWNC SC   NFQRR +C RC  P
Sbjct: 355 RPGDWNCPSCGFSNFQRRTACFRCSFP 381

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q7M760|ZRAN1_MOUSE Ubiquitin thioesterase Zranb1 OS=Mus musculus GN=Zranb1 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGP----- 55
           M     W+C  C +LN+ R   C +C   R      +     G GS    FS  P     
Sbjct: 82  MENANKWSCHMCTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYN 141

Query: 56  -----DVRPGDWYCSVGNCGAHNFASRSSCFKC 83
                + R   W CSV  C   N+A    C  C
Sbjct: 142 DRNKLNTRTQHWTCSV--CTYENWAKAKKCVVC 172

Positive regulator of the Wnt signaling pathway that specifically cleaves 'Lys-63'-linked ubiquitin chains. Acts by deubiquitinating APC protein, a negative regulator of Wnt-mediated transcription. Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the stress fiber dynamics and cell migration. May also modulate TNF-alpha signaling.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
255548980	154	protein with unknown function [Ricinus c	0.679	0.798	0.751	2e-42
449441928	155	PREDICTED: uncharacterized RNA-binding p	0.685	0.8	0.736	2e-41
224141875	155	predicted protein [Populus trichocarpa]	0.685	0.8	0.720	5e-41
224073746	151	predicted protein [Populus trichocarpa]	0.662	0.794	0.730	5e-41
255553093	152	protein with unknown function [Ricinus c	0.674	0.802	0.713	1e-39
356507744	159	PREDICTED: uncharacterized RNA-binding p	0.690	0.786	0.723	3e-39
225430224	158	PREDICTED: uncharacterized RNA-binding p	0.696	0.797	0.751	3e-39
147776310	127	hypothetical protein VITISV_026311 [Viti	0.696	0.992	0.751	3e-38
357466287	185	Zinc finger protein-like protein [Medica	0.707	0.691	0.659	4e-37
74027078	139	zinc finger protein-like protein [Gossyp	0.602	0.784	0.674	4e-37

>gi|255548980|ref|XP_002515546.1| protein with unknown function [Ricinus communis] gi|223545490|gb|EEF46995.1| protein with unknown function [Ricinus communis]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/129 (75%), Positives = 105/129 (81%), Gaps = 6/129 (4%)

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPG 60
           MSRPGDWNCRSC HLNFQRRDSCQRC EPR G+R GD+ S  G   SS    TGPDVRPG
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCREPRPGER-GDHYSSFGGRGSSSFGFTGPDVRPG 59

Query: 61  DWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSG 120
           DWYC+ GNCGAHNFASRSSCFKCGA+KD+S+GGF   G+M RMRGF FG G   S+SRSG
Sbjct: 60  DWYCTFGNCGAHNFASRSSCFKCGASKDESSGGF--DGEMSRMRGFGFGSG---STSRSG 114

Query: 121 WKSGDWICT 129
           WKSGDWICT
Sbjct: 115 WKSGDWICT 123

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441928|ref|XP_004138734.1| PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis sativus] gi|449525766|ref|XP_004169887.1| PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis sativus]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/129 (73%), Positives = 104/129 (80%), Gaps = 5/129 (3%)

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRA    G YG     GSSSFGF+TGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSG 120
           DWYC+V NCGAHNFASRS CFKCGATKD+++      GD+PRMRGF FGG    +S+R G
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAA-AYDGDLPRMRGFNFGG----ASNRPG 115

Query: 121 WKSGDWICT 129
           WKSGDWIC 
Sbjct: 116 WKSGDWICA 124

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141875|ref|XP_002324286.1| predicted protein [Populus trichocarpa] gi|222865720|gb|EEF02851.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 93/129 (72%), Positives = 102/129 (79%), Gaps = 5/129 (3%)

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPG 60
           MSRPGDWNCRSC HLNFQRRDSCQRCG+PR G+R  D+    G  S      TGPDVRPG
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDPRPGER--DHYGSFGGRSGGSFGFTGPDVRPG 58

Query: 61  DWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSG 120
           DWYCSVGNCGAHNFASRSSCFKCG +KD+S+GG G   D+  MRG+ FGGG  S+SSRS 
Sbjct: 59  DWYCSVGNCGAHNFASRSSCFKCGMSKDESSGG-GLDADISWMRGYGFGGG--SASSRSN 115

Query: 121 WKSGDWICT 129
           WKSGDWICT
Sbjct: 116 WKSGDWICT 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073746|ref|XP_002304153.1| predicted protein [Populus trichocarpa] gi|222841585|gb|EEE79132.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/130 (73%), Positives = 102/130 (78%), Gaps = 10/130 (7%)

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPG 60
           MSRPGDWNCRSC HLNFQRRDSCQRCG+PR G   GD G FG RG S+FGF TG DVRPG
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDPRTG---GDLGGFGARGGSAFGF-TGSDVRPG 56

Query: 61  DWYCSVGNCGAHNFASRSSCFKCGATKD-DSAGGFGEGGDMPRMRGFRFGGGGSSSSSRS 119
           DWYC+ GNCGAHNFASRSSCFKCG  K+ DS+GGF    D  R RGF   GG +  S+RS
Sbjct: 57  DWYCTAGNCGAHNFASRSSCFKCGVYKEIDSSGGFDS--DFSRSRGF---GGSTGGSNRS 111

Query: 120 GWKSGDWICT 129
           GWKSGDWICT
Sbjct: 112 GWKSGDWICT 121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553093|ref|XP_002517589.1| protein with unknown function [Ricinus communis] gi|223543221|gb|EEF44753.1| protein with unknown function [Ricinus communis]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 97/129 (75%), Gaps = 7/129 (5%)

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPG 60
           MSRPGDWNCRSC HLNFQRRDSCQRCG+ R+G            GSS FGFSTG DVRPG
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDSRSGGGDFGGFGGRSVGSS-FGFSTGSDVRPG 59

Query: 61  DWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSG 120
           DWYC+ GNCGAHNFASRSSCFKCG  KDDSA   G   D+PR RG  FGGG    S+RSG
Sbjct: 60  DWYCTAGNCGAHNFASRSSCFKCGVYKDDSAAATGFDSDIPRSRG--FGGG----SNRSG 113

Query: 121 WKSGDWICT 129
           WKSGDWICT
Sbjct: 114 WKSGDWICT 122

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507744|ref|XP_003522624.1| PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Glycine max]

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/130 (72%), Positives = 104/130 (80%), Gaps = 5/130 (3%)

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGF-STGPDVRP 59
           MSRPGDWNCR+CNHLNFQRR+SCQRCGEPR+G      G FGG   SS    +TGPDVRP
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGGGDYGGGFGGGRGSSSFGFTTGPDVRP 60

Query: 60  GDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRS 119
           GDWYC+VGNCGAHNFASRSSCFKCGA K+DS+ G  +  DMPRMR + FGGG   SS+R 
Sbjct: 61  GDWYCTVGNCGAHNFASRSSCFKCGAPKEDSSAGPFD-ADMPRMRPYGFGGG---SSARP 116

Query: 120 GWKSGDWICT 129
           GWKSGDWICT
Sbjct: 117 GWKSGDWICT 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430224|ref|XP_002282524.1| PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Vitis vinifera] gi|296082008|emb|CBI21013.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/129 (75%), Positives = 103/129 (79%), Gaps = 3/129 (2%)

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPG 60
           MSRPGDWNCRSC +LNFQRRDSCQRCGEPR GDR GDYG F  RGSSSFGF TGPDVRPG
Sbjct: 1   MSRPGDWNCRSCQYLNFQRRDSCQRCGEPRPGDR-GDYGGFS-RGSSSFGF-TGPDVRPG 57

Query: 61  DWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSG 120
           DWYC++GNCGAHNFASRSSCFKCG  KD+S+GG+      PR  GF  GG   S   RSG
Sbjct: 58  DWYCTIGNCGAHNFASRSSCFKCGGLKDESSGGYEGDMSRPRGFGFGSGGSSGSGIGRSG 117

Query: 121 WKSGDWICT 129
           WKSGDWIC 
Sbjct: 118 WKSGDWICN 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776310|emb|CAN69718.1| hypothetical protein VITISV_026311 [Vitis vinifera]

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/129 (75%), Positives = 104/129 (80%), Gaps = 3/129 (2%)

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPG 60
           MSRPGDWNCRSC +LNFQRRDSCQRCGEPR GDR GD+G F  RGSSSFGF TGPDVRPG
Sbjct: 1   MSRPGDWNCRSCQYLNFQRRDSCQRCGEPRPGDR-GDFGGFS-RGSSSFGF-TGPDVRPG 57

Query: 61  DWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSG 120
           DWYC++GNCGAHNFASRSSCFKCG  KD+S+GG+      PR  GF  GG   S S RSG
Sbjct: 58  DWYCTIGNCGAHNFASRSSCFKCGGLKDESSGGYEGDMSRPRGFGFGSGGSSGSGSGRSG 117

Query: 121 WKSGDWICT 129
           WKSGDWIC 
Sbjct: 118 WKSGDWICN 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466287|ref|XP_003603428.1| Zinc finger protein-like protein [Medicago truncatula] gi|355492476|gb|AES73679.1| Zinc finger protein-like protein [Medicago truncatula]

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 101/138 (73%), Gaps = 10/138 (7%)

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSG--DYGS--FGGRGSSS-FGFSTGP 55
           MSRPGDWNCR+CNHLNFQRR+SCQRCGE R     G  D+G    GGRGSSS F F+TGP
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFTTGP 60

Query: 56  DVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRF----GGG 111
           DVRPGDWYC+VGNCGAHNFASRSSCFKCGA KD       +  DMPR+    +    G  
Sbjct: 61  DVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKDIDTFS-SDSSDMPRLLRSPYGFGAGSA 119

Query: 112 GSSSSSRSGWKSGDWICT 129
           G  +S+R GWKSGDWICT
Sbjct: 120 GGGASTRPGWKSGDWICT 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|74027078|gb|AAZ94630.1| zinc finger protein-like protein [Gossypium hirsutum]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 94/129 (72%), Gaps = 20/129 (15%)

Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPG 60
           MSRPGDWNCRSC HLNFQRRD+CQRCGE R G R G          S+FGF+ G DVRPG
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDNCQRCGESRYGVRVG----------STFGFTAGSDVRPG 50

Query: 61  DWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSG 120
           DWYC+ GNCG HNFASRS+CF CGA KD+SAGGF    DM R RG  FGG      +RSG
Sbjct: 51  DWYCTAGNCGTHNFASRSTCFNCGAFKDESAGGFDL--DMSRSRG--FGG------NRSG 100

Query: 121 WKSGDWICT 129
           WKSGDWICT
Sbjct: 101 WKSGDWICT 109

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2093317	164	AT3G15680 [Arabidopsis thalian	0.712	0.786	0.537	2.4e-35
TAIR|locus:2179479	170	AT5G25490 [Arabidopsis thalian	0.707	0.752	0.503	1.8e-32
TAIR|locus:1006230021	138	AT2G26695 [Arabidopsis thalian	0.580	0.760	0.338	5.3e-17
POMBASE|SPAC17H9.04c	604	SPAC17H9.04c "RNA-binding prot	0.149	0.044	0.666	4.2e-15
TAIR|locus:2827841	268	AT2G17975 [Arabidopsis thalian	0.414	0.279	0.337	1.3e-12
ASPGD|ASPL0000012537	609	AN8055 [Emericella nidulans (t	0.149	0.044	0.629	6.8e-12
UNIPROTKB|G4MV21	629	MGG_07327 "Asparagine-rich pro	0.149	0.042	0.629	6.8e-12
SGD|S000002326	719	NRP1 "Putative RNA binding pro	0.149	0.037	0.666	2e-11
CGD|CAL0001753	763	NRP1 [Candida albicans (taxid:	0.132	0.031	0.666	1.4e-08
UNIPROTKB|Q5A791	763	NRP1 "Putative uncharacterized	0.132	0.031	0.666	1.4e-08

TAIR|locus:2093317 AT3G15680 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 72/134 (53%), Positives = 79/134 (58%)

Query:     1 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAX---XXXXXXXXXXXXXXXXXXXXTGPDV 57
             MSRPGDWNCRSC+HLNFQRRDSCQRCG+ R+                        TG DV
Sbjct:     1 MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDV 60

Query:    58 RPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGG-DMPRMXXXXXXXXXX-XX 115
             RPGDWYC+VGNCG HNFASRS+CFKCG  KD++  G G GG   P M             
Sbjct:    61 RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGN 120

Query:   116 XXXXXWKSGDWICT 129
                  WKSGDWICT
Sbjct:   121 GGRSSWKSGDWICT 134

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2179479 AT5G25490 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 70/139 (50%), Positives = 79/139 (56%)

Query:     1 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAXXXXXXXXXXXXXX--XXXXXXXTGPDVR 58
             M+RPGDWNCR C+HLNFQRRDSCQRC EPR                        TGPDVR
Sbjct:     1 MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVR 60

Query:    59 PGDWYCSVGNCGAHNFASRSSCFKCGATKDD----SAG---GFGEGGDMPR--MXXXXXX 109
             PGDWYC++G+CG HNFA+RSSCFKCGA KD+    SA    GF +    PR  +      
Sbjct:    61 PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGS 120

Query:   110 XXXXXXXXXXXWKSGDWIC 128
                        WKSGDWIC
Sbjct:   121 SSGGGGTGRSPWKSGDWIC 139

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230021 AT2G26695 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 42/124 (33%), Positives = 58/124 (46%)

Query:     5 GDWNCRSCNHLNFQRRDSCQRCGEPRAXXXXXXXXXXXXXXXXXXXXXTGPDVRPGDWYC 64
             GDW C +C H NF++R+SCQ+CG P+                         +V  GDWYC
Sbjct:     6 GDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRT-----------EVMAGDWYC 54

Query:    65 SVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMXXXXXXXXXXXXXXXXXWKSG 124
                NCG+HN+ASR+SC++CG  K +    +  G  M                    WK+G
Sbjct:    55 GALNCGSHNYASRTSCYRCGMIKVEYTEQY-YGAQM-------VAYGNDGAACPPGWKTG 106

Query:   125 DWIC 128
             DW+C
Sbjct:   107 DWVC 110

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

POMBASE|SPAC17H9.04c SPAC17H9.04c "RNA-binding protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 107 (42.7 bits), Expect = 4.2e-15, Sum P(3) = 4.2e-15
 Identities = 18/27 (66%), Positives = 18/27 (66%)

Query:     3 RPGDWNCRSCNHLNFQRRDSCQRCGEP 29
             RPGDWNC  C   NFQRR SC RC  P
Sbjct:   343 RPGDWNCPMCGFSNFQRRTSCFRCSFP 369

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2827841 AT2G17975 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 30/89 (33%), Positives = 39/89 (43%)

Query:     3 RPGDWNCRSCNHLNFQRRDSCQRCGEPRAXXXXXXXXXXXXXXXXXXXXXTGPDVRPGDW 62
             R GDW C  C + N+  R  C RC +PR                        P  R GDW
Sbjct:     5 REGDWECLGCRNRNYAFRSFCNRCKQPRLIMDNNTSPNSKWL----------P--RIGDW 52

Query:    63 YCSVGNCGAHNFASRSSCFKCGATKDDSA 91
              C+   C  +N+ASR  C KCG +K+ +A
Sbjct:    53 ICT--GCTNNNYASREKCKKCGQSKEVAA 79

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ASPGD|ASPL0000012537 AN8055 [Emericella nidulans (taxid:162425)]

 Score = 103 (41.3 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query:     3 RPGDWNCRSCNHLNFQRRDSCQRCGEP 29
             RPGDW C SC   NFQRR +C RC  P
Sbjct:   352 RPGDWTCPSCGFSNFQRRTACFRCSFP 378

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

UNIPROTKB|G4MV21 MGG_07327 "Asparagine-rich protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 104 (41.7 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query:     3 RPGDWNCRSCNHLNFQRRDSCQRCGEP 29
             RPGDW C SC   NFQRR +C RC  P
Sbjct:   354 RPGDWTCPSCGFSNFQRRTACFRCSYP 380

GO:0008150 "biological_process" evidence=ND

SGD|S000002326 NRP1 "Putative RNA binding protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 109 (43.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
 Identities = 18/27 (66%), Positives = 19/27 (70%)

Query:     3 RPGDWNCRSCNHLNFQRRDSCQRCGEP 29
             RPGDWNC SC   NFQRR +C RC  P
Sbjct:   355 RPGDWNCPSCGFSNFQRRTACFRCSFP 381

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0010494 "cytoplasmic stress granule" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

CGD|CAL0001753 NRP1 [Candida albicans (taxid:5476)]

 Score = 97 (39.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
 Identities = 16/24 (66%), Positives = 16/24 (66%)

Query:     3 RPGDWNCRSCNHLNFQRRDSCQRC 26
             RPGDW C SC   NFQRR  C RC
Sbjct:   383 RPGDWTCLSCGFSNFQRRTHCFRC 406

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A791 NRP1 "Putative uncharacterized protein NRP1" [Candida albicans SC5314 (taxid:237561)]

 Score = 97 (39.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
 Identities = 16/24 (66%), Positives = 16/24 (66%)

Query:     3 RPGDWNCRSCNHLNFQRRDSCQRC 26
             RPGDW C SC   NFQRR  C RC
Sbjct:   383 RPGDWTCLSCGFSNFQRRTHCFRC 406

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032614001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (149 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
smart00547	25	smart00547, ZnF_RBZ, Zinc finger domain	1e-04
smart00547	25	smart00547, ZnF_RBZ, Zinc finger domain	3e-04
pfam00641	29	pfam00641, zf-RanBP, Zn-finger in Ran binding prot	0.004

>gnl|CDD|197784 smart00547, ZnF_RBZ, Zinc finger domain

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 60 GDWYCSVGNCGAHNFASRSSCFKCGA 85
          GDW C    C   NFASRS CF CGA
Sbjct: 1  GDWECPA--CTFLNFASRSKCFACGA 24

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP. Length = 25

>gnl|CDD|197784 smart00547, ZnF_RBZ, Zinc finger domain

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 5  GDWNCRSCNHLNFQRRDSCQRCGEP 29
          GDW C +C  LNF  R  C  CG P
Sbjct: 1  GDWECPACTFLNFASRSKCFACGAP 25

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP. Length = 25

>gnl|CDD|201366 pfam00641, zf-RanBP, Zn-finger in Ran binding protein and others

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 59 PGDWYCSVGNCGAHNFASRSSCFKCGATK 87
           GDW CS   C   NFA+ + C  C A K
Sbjct: 1  EGDWDCSK--CLVQNFATSTKCVACQAPK 27

Length = 29

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
KOG4198	280	consensus RNA-binding Ran Zn-finger protein and re	99.69
KOG4198	280	consensus RNA-binding Ran Zn-finger protein and re	99.55
KOG1995	351	consensus Conserved Zn-finger protein [General fun	98.86
PF00641	30	zf-RanBP: Zn-finger in Ran binding protein and oth	98.61
PF00641	30	zf-RanBP: Zn-finger in Ran binding protein and oth	98.44
KOG1995	351	consensus Conserved Zn-finger protein [General fun	98.2
smart00547	26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	98.03
smart00547	26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	98.0
PF12773	50	DZR: Double zinc ribbon	94.31
PRK14559	645	putative protein serine/threonine phosphatase; Pro	92.59
PF13248	26	zf-ribbon_3: zinc-ribbon domain	84.71
PF12773	50	DZR: Double zinc ribbon	82.96

>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]

Probab=99.69  E-value=4.6e-17  Score=141.10  Aligned_cols=150  Identities=30%  Similarity=0.437  Sum_probs=102.5

Q ss_pred             CCCCC-ceEcCCCCccceeccccccccCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCcccCCCCCCCccccCCc
Q 039618            1 MSRPG-DWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSS-SFGFSTGPDVRPGDWYCSVGNCGAHNFASRS   78 (181)
Q Consensus         1 ~~k~G-dW~C~~C~~~Nfa~r~~C~~C~~pkp~~~~~~~~~~gg~~~~-~~g~~~~~~~~~GdW~C~~~~C~~~Nfa~R~   78 (181)
                      |.++| ||.|..|.++||..+..|.+|.-+++- ..++--++.++..+ .+.+......++|||.|+  .|+++|||+|+
T Consensus         3 ~~r~g~~~~~~~~~~~~~~~~~~c~~c~~~~~~-i~~~~~~~~tid~~~~~~~~~~~~~~pgdw~c~--~c~~~n~arr~   79 (280)
T KOG4198|consen    3 MFRKGVDSLKRLCLHVNFDERDSCGRCSLSRAY-IQPDDDEARTIDVMRLLLTNSKDPPRPGDWNCP--LCGFHNSARRL   79 (280)
T ss_pred             cccccCCcccchhhhhccccccccccccCCccc-ccccccccCccchhhhcccccCCCCCCcccccC--ccchhhHHHhh
Confidence            55677 999999999999999999999999944 22211124444433 233344567899999999  69999999999


Q ss_pred             ccccCCCCCCCCCCCCCC--CC--CCCCCcccccC---CC--CCCCC-----CCCCCCCCCcccCCCCccchhhhhhhcc
Q 039618           79 SCFKCGATKDDSAGGFGE--GG--DMPRMRGFRFG---GG--GSSSS-----SRSGWKSGDWICTLGLVAMSTILQAEQN  144 (181)
Q Consensus        79 ~C~~C~apkp~~~~~~g~--~~--~~~~~~g~g~g---~~--~~~~~-----~~~~~k~GDW~C~~C~~~N~~a~r~~Cn  144 (181)
                      .|++|+.++++.......  ..  +......+..+   ..  .+...     ....|++|||+|+.|..+| ++++..|-
T Consensus        80 ~c~~c~~s~~~~~~~~~~~~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~n~~~~r~~~~GDW~Cp~C~fhN-farn~~C~  158 (280)
T KOG4198|consen   80 LCFRCGFSKVPLDSALTAPNSGSRSLQTGPRYFKGDWLCPRCPGLGFSRNNKPKRPWRSGDWECPGCNFHN-FARNSECF  158 (280)
T ss_pred             hcceecccCCCccccccCCCCcccccccccccccCCCCCCCCCCCcccccccccCCccccCcccCCCCcee-ccccchhh
Confidence            999999998876542100  00  00000001100   00  00000     1235999999999999999 99999999


Q ss_pred             ccCCCcCCce
Q 039618          145 VLDAVHQGIL  154 (181)
Q Consensus       145 ~c~~~~~g~~  154 (181)
                      +|+++++-..
T Consensus       159 rC~~~r~~~a  168 (280)
T KOG4198|consen  159 RCGAKRPLAA  168 (280)
T ss_pred             hcCCcCcccc
Confidence            9998887633

>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]

Probab=99.55  E-value=5.6e-15  Score=128.15  Aligned_cols=133  Identities=31%  Similarity=0.527  Sum_probs=94.1

Q ss_pred             CCCCceEcCCCCccceeccccccccCCCCCCCCC----CCCC---------CC-CCC-CCCCCCCC------CCCCCCCC
Q 039618            2 SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRS----GDYG---------SF-GGR-GSSSFGFS------TGPDVRPG   60 (181)
Q Consensus         2 ~k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~~~~----~~~~---------~~-gg~-~~~~~g~~------~~~~~~~G   60 (181)
                      .++|||.|+.|+++||++|+.|++|+.+++....    ...+         .+ ++. ...+.+.+      .....++|
T Consensus        60 ~~pgdw~c~~c~~~n~arr~~c~~c~~s~~~~~~~~~~~~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~n~~~~r~~~~G  139 (280)
T KOG4198|consen   60 PRPGDWNCPLCGFHNSARRLLCFRCGFSKVPLDSALTAPNSGSRSLQTGPRYFKGDWLCPRCPGLGFSRNNKPKRPWRSG  139 (280)
T ss_pred             CCCcccccCccchhhHHHhhhcceecccCCCccccccCCCCcccccccccccccCCCCCCCCCCCcccccccccCCcccc
Confidence            4689999999999999999999999998865321    0000         00 000 01111111      11247999


Q ss_pred             CcccCCCCCCCccccCCcccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCcccCCCCccchhhhh
Q 039618           61 DWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSGWKSGDWICTLGLVAMSTILQ  140 (181)
Q Consensus        61 dW~C~~~~C~~~Nfa~R~~C~~C~apkp~~~~~~g~~~~~~~~~g~g~g~~~~~~~~~~~~k~GDW~C~~C~~~N~~a~r  140 (181)
                      ||+|+  .|+++|||++..|++|+++++....-             +        ......+++||.+..+.... ..+.
T Consensus       140 DW~Cp--~C~fhNfarn~~C~rC~~~r~~~a~~-------------~--------~~~s~~~~~~~~s~~~~~~~-~t~~  195 (280)
T KOG4198|consen  140 DWECP--GCNFHNFARNSECFRCGAKRPLAALL-------------G--------NQASEATEHDWLSKVADSSS-STRF  195 (280)
T ss_pred             CcccC--CCCceeccccchhhhcCCcCcccccc-------------c--------cccccccccccccccccccc-ceec
Confidence            99998  99999999999999999999875421             0        01224668999999999988 6778


Q ss_pred             hhccccCCCcCCceeece
Q 039618          141 AEQNVLDAVHQGILQATS  158 (181)
Q Consensus       141 ~~Cn~c~~~~~g~~~~~~  158 (181)
                      +.|-+|.+..+-.+...+
T Consensus       196 ~~~~r~~~~~~~~~~~~d  213 (280)
T KOG4198|consen  196 ESLLRCNARGEMSESRVD  213 (280)
T ss_pred             ccchhhcccCcccccccc
Confidence            889999887766654443

>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]

Probab=98.86  E-value=2.5e-09  Score=95.24  Aligned_cols=148  Identities=18%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             CCCceEcC--CCCccceeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCcccc-----
Q 039618            3 RPGDWNCR--SCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFA-----   75 (181)
Q Consensus         3 k~GdW~C~--~C~~~Nfa~r~~C~~C~~pkp~~~~~~~~~~gg~~~~~~g~~~~~~~~~GdW~C~~~~C~~~Nfa-----   75 (181)
                      ..++|.|+  +|.+.||.+.++|-.|+.+|.+..+.... +.-.-+  ........+...||.|.  .|.+++|+     
T Consensus        68 ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~-y~dkeT--~~~KGeatvS~~D~~~a--kaai~~~agkdf~  142 (351)
T KOG1995|consen   68 TIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKI-YTDKET--GAPKGEATVSYEDPPAA--KAAIEWFAGKDFC  142 (351)
T ss_pred             cceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhc-cccccc--cCcCCceeeeecChhhh--hhhhhhhcccccc
Confidence            35799997  89999999999999999999875321110 000000  00000012233444554  44555554     


Q ss_pred             ------------------CCcccccCCCCCCCC----CC-CCCCCCCCCCCcccccCC---CCCCCCCCCCCCCCCcccC
Q 039618           76 ------------------SRSSCFKCGATKDDS----AG-GFGEGGDMPRMRGFRFGG---GGSSSSSRSGWKSGDWICT  129 (181)
Q Consensus        76 ------------------~R~~C~~C~apkp~~----~~-~~g~~~~~~~~~g~g~g~---~~~~~~~~~~~k~GDW~C~  129 (181)
                                        .+..|..++++....    .. ..+..+.+....+..-++   ++.+...-.+..++||+|+
T Consensus       143 gn~ikvs~a~~r~~ve~~rg~~~~~~g~g~fg~~~~grg~~~G~gg~~~~~~~~~rGg~~~~g~~g~~~~~~~d~Dw~c~  222 (351)
T KOG1995|consen  143 GNTIKVSLAERRTGVESVRGGYPNDGGAGEFGRLRGGRGGPGGPGGGDGEAGKGDRGGVPDGGESGGGNVQDEDGDWDCP  222 (351)
T ss_pred             CCCchhhhhhhccCcccccccccCcCCCCCccccccCCCCCCCCCCccccccccccCCcCCCcccCCccccccccccccc
Confidence                              444444444444320    00 000000000000000000   0000122346789999999


Q ss_pred             -CCCccchhhhhhhccccCCCcCCceee
Q 039618          130 -LGLVAMSTILQAEQNVLDAVHQGILQA  156 (181)
Q Consensus       130 -~C~~~N~~a~r~~Cn~c~~~~~g~~~~  156 (181)
                       .|+|+| ++.+..||+|+++|+.++..
T Consensus       223 ~~c~N~n-fa~r~~cnrck~~Kp~~~~~  249 (351)
T KOG1995|consen  223 PSCGNRN-FAWREECNRCKAPKPERSLP  249 (351)
T ss_pred             ccccccc-cccccccccccCCCcccccC
Confidence             999999 79999999999999977544

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.61  E-value=1.7e-08  Score=59.87  Aligned_cols=30  Identities=47%  Similarity=1.194  Sum_probs=24.7

Q ss_pred             CCCceEcCCCCccceeccccccccCCCCCC
Q 039618            3 RPGDWNCRSCNHLNFQRRDSCQRCGEPRAG   32 (181)
Q Consensus         3 k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~   32 (181)
                      |+|+|.|+.|.++|++++..|.+|++|||.
T Consensus         1 k~g~W~C~~C~~~N~~~~~~C~~C~~~rp~   30 (30)
T PF00641_consen    1 KEGDWKCPSCTFMNPASRSKCVACGAPRPG   30 (30)
T ss_dssp             -SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred             CCcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence            579999999999999999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.44  E-value=7.5e-08  Score=57.04  Aligned_cols=30  Identities=47%  Similarity=1.007  Sum_probs=24.4

Q ss_pred             CCCCcccCCCCCCCccccCCcccccCCCCCCC
Q 039618           58 RPGDWYCSVGNCGAHNFASRSSCFKCGATKDD   89 (181)
Q Consensus        58 ~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~   89 (181)
                      ++|+|.|+  .|.++|++++..|.+|+++||.
T Consensus         1 k~g~W~C~--~C~~~N~~~~~~C~~C~~~rp~   30 (30)
T PF00641_consen    1 KEGDWKCP--SCTFMNPASRSKCVACGAPRPG   30 (30)
T ss_dssp             -SSSEEET--TTTEEEESSSSB-TTT--BTTB
T ss_pred             CCcCccCC--CCcCCchHHhhhhhCcCCCCcC
Confidence            46899998  9999999999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....

>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]

Probab=98.20  E-value=4.7e-06  Score=74.52  Aligned_cols=36  Identities=39%  Similarity=0.864  Sum_probs=32.5

Q ss_pred             CCCCCCCcccCCCCCCCccccCCcccccCCCCCCCCC
Q 039618           55 PDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSA   91 (181)
Q Consensus        55 ~~~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~~   91 (181)
                      ...+++||.|+ +.|.|.||++|..|++|+++||...
T Consensus       212 ~~~~d~Dw~c~-~~c~N~nfa~r~~cnrck~~Kp~~~  247 (351)
T KOG1995|consen  212 VQDEDGDWDCP-PSCGNRNFAWREECNRCKAPKPERS  247 (351)
T ss_pred             ccccccccccc-ccccccccccccccccccCCCcccc
Confidence            34689999999 9999999999999999999999653

>smart00547 ZnF_RBZ Zinc finger domain

Probab=98.03  E-value=1.9e-06  Score=49.09  Aligned_cols=26  Identities=50%  Similarity=1.324  Sum_probs=24.5

Q ss_pred             CceEcCCCCccceeccccccccCCCC
Q 039618            5 GDWNCRSCNHLNFQRRDSCQRCGEPR   30 (181)
Q Consensus         5 GdW~C~~C~~~Nfa~r~~C~~C~~pk   30 (181)
                      |||.|+.|.++|++.+..|+.|++|.
T Consensus         1 g~W~C~~C~~~N~~~~~~C~~C~~p~   26 (26)
T smart00547        1 GDWECPACTFLNFASRSKCFACGAPX   26 (26)
T ss_pred             CcccCCCCCCcChhhhccccccCCcC
Confidence            69999999999999999999999873

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

>smart00547 ZnF_RBZ Zinc finger domain

Probab=98.00  E-value=3.1e-06  Score=48.21  Aligned_cols=25  Identities=64%  Similarity=1.354  Sum_probs=23.9

Q ss_pred             CCcccCCCCCCCccccCCcccccCCCC
Q 039618           60 GDWYCSVGNCGAHNFASRSSCFKCGAT   86 (181)
Q Consensus        60 GdW~C~~~~C~~~Nfa~R~~C~~C~ap   86 (181)
                      |||.|+  .|.++|++.+..|++|++|
T Consensus         1 g~W~C~--~C~~~N~~~~~~C~~C~~p   25 (26)
T smart00547        1 GDWECP--ACTFLNFASRSKCFACGAP   25 (26)
T ss_pred             CcccCC--CCCCcChhhhccccccCCc
Confidence            699999  9999999999999999987

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

>PF12773 DZR: Double zinc ribbon

Probab=94.31  E-value=0.051  Score=34.93  Aligned_cols=50  Identities=32%  Similarity=0.713  Sum_probs=41.3

Q ss_pred             cCCCCccceeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCccccCCcccccCC
Q 039618            9 CRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFASRSSCFKCG   84 (181)
Q Consensus         9 C~~C~~~Nfa~r~~C~~C~~pkp~~~~~~~~~~gg~~~~~~g~~~~~~~~~GdW~C~~~~C~~~Nfa~R~~C~~C~   84 (181)
                      |+.|+..+-.....|..|+++.+.                        .....++|+  .|+..|......|..|+
T Consensus         1 Cp~Cg~~~~~~~~fC~~CG~~l~~------------------------~~~~~~~C~--~Cg~~~~~~~~fC~~CG   50 (50)
T PF12773_consen    1 CPHCGTPNPDDAKFCPHCGTPLPP------------------------PDQSKKICP--NCGAENPPNAKFCPNCG   50 (50)
T ss_pred             CCCcCCcCCccccCChhhcCChhh------------------------ccCCCCCCc--CCcCCCcCCcCccCccc
Confidence            788999999999999999998751                        112456898  99999999999999886

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=92.59  E-value=0.11  Score=50.52  Aligned_cols=50  Identities=28%  Similarity=0.694  Sum_probs=43.1

Q ss_pred             EcCCCCccceeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCccccCCcccccCCCCC
Q 039618            8 NCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATK   87 (181)
Q Consensus         8 ~C~~C~~~Nfa~r~~C~~C~~pkp~~~~~~~~~~gg~~~~~~g~~~~~~~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apk   87 (181)
                      .|+.|++.|-.....|.+|+++-..                         +    .|+  .|+..+......|..|+++-
T Consensus         3 ~Cp~Cg~~n~~~akFC~~CG~~l~~-------------------------~----~Cp--~CG~~~~~~~~fC~~CG~~~   51 (645)
T PRK14559          3 ICPQCQFENPNNNRFCQKCGTSLTH-------------------------K----PCP--QCGTEVPVDEAHCPNCGAET   51 (645)
T ss_pred             cCCCCCCcCCCCCccccccCCCCCC-------------------------C----cCC--CCCCCCCcccccccccCCcc
Confidence            5999999999999999999987521                         0    487  99999999999999999875


Q ss_pred             C
Q 039618           88 D   88 (181)
Q Consensus        88 p   88 (181)
                      .
T Consensus        52 ~   52 (645)
T PRK14559         52 G   52 (645)
T ss_pred             c
Confidence            4

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=84.71  E-value=0.43  Score=27.11  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=20.7

Q ss_pred             eEcCCCCccceeccccccccCCC
Q 039618            7 WNCRSCNHLNFQRRDSCQRCGEP   29 (181)
Q Consensus         7 W~C~~C~~~Nfa~r~~C~~C~~p   29 (181)
                      ..|+.|+..+......|..|+++
T Consensus         3 ~~Cp~Cg~~~~~~~~fC~~CG~~   25 (26)
T PF13248_consen    3 MFCPNCGAEIDPDAKFCPNCGAK   25 (26)
T ss_pred             CCCcccCCcCCcccccChhhCCC
Confidence            46999999999999999999986

>PF12773 DZR: Double zinc ribbon

Probab=82.96  E-value=1.3  Score=28.27  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=35.5

Q ss_pred             CCCCccccCCcccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCcccCCCCccchhhhhhhcccc
Q 039618           68 NCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSGWKSGDWICTLGLVAMSTILQAEQNVL  146 (181)
Q Consensus        68 ~C~~~Nfa~R~~C~~C~apkp~~~~~~g~~~~~~~~~g~g~g~~~~~~~~~~~~k~GDW~C~~C~~~N~~a~r~~Cn~c  146 (181)
                      .|+..+-.....|..|+++-+..                               ...-++|+.|+..| .....-|..|
T Consensus         3 ~Cg~~~~~~~~fC~~CG~~l~~~-------------------------------~~~~~~C~~Cg~~~-~~~~~fC~~C   49 (50)
T PF12773_consen    3 HCGTPNPDDAKFCPHCGTPLPPP-------------------------------DQSKKICPNCGAEN-PPNAKFCPNC   49 (50)
T ss_pred             CcCCcCCccccCChhhcCChhhc-------------------------------cCCCCCCcCCcCCC-cCCcCccCcc
Confidence            89999999999999999887510                               12246799999988 6667777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	5e-13
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	2e-04
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	1e-11
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	5e-06
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	2e-05
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	9e-05
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	1e-04
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	5e-04

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92

 Score = 61.1 bits (147), Expect = 5e-13
 Identities = 20/92 (21%), Positives = 26/92 (28%), Gaps = 4/92 (4%)

Query: 1  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRG--SSSFGFSTGPDVR 58
          +   G W C  C   N      C  C   + G  S    +       S            
Sbjct: 3  LGSVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKP 62

Query: 59 PGDWYCSVGNCGAHNFASRSSCFKCGATKDDS 90
           G W C V  C   N A  + C  C + K  +
Sbjct: 63 EGSWDCEV--CLVQNKADSTKCIACESAKPGT 92

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 15/69 (21%), Positives = 17/69 (24%), Gaps = 2/69 (2%)

Query: 54  GPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGS 113
           GP    G W C V  C   N A  S C  C + K               +      G   
Sbjct: 1   GPLGSVGSWECPV--CCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDK 58

Query: 114 SSSSRSGWK 122
                  W 
Sbjct: 59  FKKPEGSWD 67

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98

 Score = 57.2 bits (137), Expect = 1e-11
 Identities = 20/94 (21%), Positives = 25/94 (26%), Gaps = 10/94 (10%)

Query: 2  SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSS--------FGFST 53
          S    W C +C   N    + C  C   +   +     +  G  S S         GF  
Sbjct: 5  SAGSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGD 64

Query: 54 GPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATK 87
                G W C    C   N      C  C   K
Sbjct: 65 KFKPAIGTWDCDT--CLVQNKPEAVKCVACETPK 96

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Length = 45

 Score = 41.1 bits (96), Expect = 5e-06
 Identities = 16/34 (47%), Positives = 18/34 (52%)

Query: 56 DVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDD 89
           V  GDW C    CG  NFA R+SC +CG  K  
Sbjct: 9  RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTT 42

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Length = 45

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 3  RPGDWNC--RSCNHLNFQRRDSCQRCGEPR 30
            GDW C  + C ++NF RR SC RCG  +
Sbjct: 11 SDGDWICPDKKCGNVNFARRTSCDRCGREK 40

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A Length = 33

 Score = 37.3 bits (86), Expect = 9e-05
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 2  SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGD 33
          S   DW C++C+++N+ RR  C  C  P+   
Sbjct: 2  SSANDWQCKTCSNVNWARRSECNMCNTPKYAK 33

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A* Length = 32

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 61 DWYCSVGNCGAHNFASRSSCFKCGATKDD 89
          DW C+   C  +NF  R  CF+CGA K D
Sbjct: 5  DWLCN--KCCLNNFRKRLKCFRCGADKFD 31

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A* Length = 32

 Score = 35.0 bits (80), Expect = 5e-04
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 6  DWNCRSCNHLNFQRRDSCQRCGEPRA 31
          DW C  C   NF++R  C RCG  + 
Sbjct: 5  DWLCNKCCLNNFRKRLKCFRCGADKF 30

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	99.7
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	99.68
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	99.25
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	99.18
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	99.12
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	99.1
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	99.06
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	99.06
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	99.04
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	98.88
3gj5_B	34	Nuclear pore complex protein NUP153; G protein, GD	98.66
2ebq_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.56
3gj3_B	33	Nuclear pore complex protein NUP153; G protein, GD	98.55
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.52
2ebv_A	57	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.48
3gj5_B	34	Nuclear pore complex protein NUP153; G protein, GD	98.22
3gj3_B	33	Nuclear pore complex protein NUP153; G protein, GD	98.12
2ebq_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.08
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	97.89
2ebv_A	57	Nuclear pore complex protein NUP153; ZF-ranbp doma	97.82
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	97.26
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	96.7
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	95.82
1nj3_A	31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	95.49
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	95.06
1nj3_A	31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	94.91
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	93.87
2c6a_A	46	Ubiquitin-protein ligase E3 MDM2; zinc finger, hum	93.82
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	92.84
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	92.46
2c6a_A	46	Ubiquitin-protein ligase E3 MDM2; zinc finger, hum	89.55
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	89.11
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	84.22

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=99.70  E-value=1.8e-18  Score=126.57  Aligned_cols=89  Identities=21%  Similarity=0.405  Sum_probs=26.7

Q ss_pred             CCCCCcccCCCCCCCccccCCcccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCcccCCCCccch
Q 039618           57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSGWKSGDWICTLGLVAMS  136 (181)
Q Consensus        57 ~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~~~~~g~~~~~~~~~g~g~g~~~~~~~~~~~~k~GDW~C~~C~~~N~  136 (181)
                      .++|||+|+  .|+++||++++.|++|++|||........ +..+.    .+..+...+..++..++|||+|+.|+++| 
T Consensus         4 ~~~g~W~C~--~C~~~N~~~~~~C~~C~~pkp~~~~~~~~-~~~~~----~~~~~~~~g~~~f~~~~g~W~C~~C~~~N-   75 (92)
T 3gj8_B            4 GSVGSWECP--VCCVSNKAEDSRCVSCTSEKPGLVSASSS-NSVPV----SLPSGGCLGLDKFKKPEGSWDCEVCLVQN-   75 (92)
T ss_dssp             -------------------------------------------------------------------CCEECTTTCCEE-
T ss_pred             CCCcCCCCC--cCCCEeccccceecccCCCCCCCCCcccc-ccCcc----cccccccccccccCCCCCcccCCcCCcCC-
Confidence            468999999  99999999999999999999864422110 00000    00000000012355689999999999999 


Q ss_pred             hhhhhhccccCCCcCCc
Q 039618          137 TILQAEQNVLDAVHQGI  153 (181)
Q Consensus       137 ~a~r~~Cn~c~~~~~g~  153 (181)
                      ++++.+|++|+++|+++
T Consensus        76 ~a~~~~C~~C~~pkp~~   92 (92)
T 3gj8_B           76 KADSTKCIACESAKPGT   92 (92)
T ss_dssp             CSSCSBCTTTCCBCC--
T ss_pred             hhhcccccccCCCCCCC
Confidence            99999999999999974

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=99.68  E-value=6.1e-18  Score=123.76  Aligned_cols=85  Identities=22%  Similarity=0.498  Sum_probs=26.6

Q ss_pred             CCCCceEcCCCCccceeccccccccCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCcccCCCCCCCccccCCc
Q 039618            2 SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGG---RGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFASRS   78 (181)
Q Consensus         2 ~k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~~~~~~~~~~gg---~~~~~~g~~~~~~~~~GdW~C~~~~C~~~Nfa~R~   78 (181)
                      .++|||+|+.|.++||++++.|++|++|||............   ......+| +.+..++|+|+|.  .|.++|+++++
T Consensus         4 ~~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~-~~f~~~~g~W~C~--~C~~~N~a~~~   80 (92)
T 3gj8_B            4 GSVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGL-DKFKKPEGSWDCE--VCLVQNKADST   80 (92)
T ss_dssp             -------------------------------------------------------------CCEECT--TTCCEECSSCS
T ss_pred             CCCcCCCCCcCCCEeccccceecccCCCCCCCCCccccccCcccccccccccc-cccCCCCCcccCC--cCCcCChhhcc
Confidence            468999999999999999999999999998653211100000   00112345 5677889999999  99999999999


Q ss_pred             ccccCCCCCCC
Q 039618           79 SCFKCGATKDD   89 (181)
Q Consensus        79 ~C~~C~apkp~   89 (181)
                      .|+.|+++||.
T Consensus        81 ~C~~C~~pkp~   91 (92)
T 3gj8_B           81 KCIACESAKPG   91 (92)
T ss_dssp             BCTTTCCBCC-
T ss_pred             cccccCCCCCC
Confidence            99999999984

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=99.25  E-value=1.2e-12  Score=96.94  Aligned_cols=86  Identities=21%  Similarity=0.358  Sum_probs=26.6

Q ss_pred             CCCCCcccCCCCCCCccccCCcccccCCCCCCCCCCCC---C--C---CCCCCCCcccccCCCCCCCCCCCCCCCCCccc
Q 039618           57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGF---G--E---GGDMPRMRGFRFGGGGSSSSSRSGWKSGDWIC  128 (181)
Q Consensus        57 ~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~~~~~---g--~---~~~~~~~~g~g~g~~~~~~~~~~~~k~GDW~C  128 (181)
                      .....|.|.  .|...|.+....|..|++||+......   +  .   ..........||+       .+|..++|+|+|
T Consensus         5 ~~~~~W~C~--~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfg-------d~fk~~~g~W~C   75 (98)
T 3gj7_B            5 SAGSSWQCD--TCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFG-------DKFKPAIGTWDC   75 (98)
T ss_dssp             ---------------------------------------------------------------------------CCEEC
T ss_pred             CCCCcccCC--ccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchh-------hccCCCCCcccC
Confidence            345789999  999999999999999999998543110   0  0   0001112234555       456778999999


Q ss_pred             CCCCccchhhhhhhccccCCCcCC
Q 039618          129 TLGLVAMSTILQAEQNVLDAVHQG  152 (181)
Q Consensus       129 ~~C~~~N~~a~r~~Cn~c~~~~~g  152 (181)
                      ..|.++| ++...+|.+|+++|+|
T Consensus        76 ~~C~~~N-~~~~~~C~aC~tpkPg   98 (98)
T 3gj7_B           76 DTCLVQN-KPEAVKCVACETPKPG   98 (98)
T ss_dssp             TTTCCEE-CTTCSBCTTTCCBCC-
T ss_pred             CcCcCCC-hhhcceecccCCCCCC
Confidence            9999999 9999999999999986

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=99.18  E-value=1.8e-11  Score=78.62  Aligned_cols=37  Identities=43%  Similarity=0.902  Sum_probs=33.7

Q ss_pred             CCCCCCCCcccCCCCCCCccccCCcccccCCCCCCCC
Q 039618           54 GPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDS   90 (181)
Q Consensus        54 ~~~~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~   90 (181)
                      ....++|||+|+++.|+++||++|+.|++|++||+++
T Consensus         7 ~~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~   43 (45)
T 1n0z_A            7 NFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             SCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             cCCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence            3567899999998899999999999999999999864

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*

Probab=99.12  E-value=2.4e-11  Score=72.77  Aligned_cols=31  Identities=35%  Similarity=0.845  Sum_probs=28.8

Q ss_pred             CCCCceEcCCCCccceeccccccccCCCCCC
Q 039618            2 SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAG   32 (181)
Q Consensus         2 ~k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~   32 (181)
                      +|+|||+|+.|+++||++|..|++|++||+.
T Consensus         1 pk~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~   31 (32)
T 2lk0_A            1 XKFEDWLCNKCCLNNFRKRLKCFRCGADKFD   31 (32)
T ss_dssp             -CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred             CCCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence            5889999999999999999999999999975

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A

Probab=99.10  E-value=5.2e-11  Score=71.74  Aligned_cols=31  Identities=35%  Similarity=0.804  Sum_probs=28.9

Q ss_pred             CCCCCcccCCCCCCCccccCCcccccCCCCCCC
Q 039618           57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDD   89 (181)
Q Consensus        57 ~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~   89 (181)
                      .++|||+|+  .|+++||++|+.|++|++||+.
T Consensus         2 ~~~gDW~C~--~C~~~Nfa~R~~C~~C~~pk~~   32 (33)
T 2k1p_A            2 SSANDWQCK--TCSNVNWARRSECNMCNTPKYA   32 (33)
T ss_dssp             CSSSSCBCS--SSCCBCCTTCSBCSSSCCBTTC
T ss_pred             CCCCCcccC--CCCCccccccccccccCCcCCC
Confidence            468999999  9999999999999999999974

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=99.06  E-value=3.8e-11  Score=88.76  Aligned_cols=83  Identities=22%  Similarity=0.462  Sum_probs=26.5

Q ss_pred             CCceEcCCCCccceeccccccccCCCCCCCCCCC--CCCCC------CCCCCCCCCCCCCCCCCCCcccCCCCCCCcccc
Q 039618            4 PGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGD--YGSFG------GRGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFA   75 (181)
Q Consensus         4 ~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~~~~~~--~~~~g------g~~~~~~g~~~~~~~~~GdW~C~~~~C~~~Nfa   75 (181)
                      ..+|.|..|.++|.+...+|..|++||+......  .+...      .......||++.+..+.|.|.|.  .|.++|.+
T Consensus         7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~--~C~~~N~~   84 (98)
T 3gj7_B            7 GSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCD--TCLVQNKP   84 (98)
T ss_dssp             ----------------------------------------------------------------CCEECT--TTCCEECT
T ss_pred             CCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCC--cCcCCChh
Confidence            4689999999999999999999999998542110  00000      00112356777788899999999  99999999


Q ss_pred             CCcccccCCCCCC
Q 039618           76 SRSSCFKCGATKD   88 (181)
Q Consensus        76 ~R~~C~~C~apkp   88 (181)
                      ....|..|++|||
T Consensus        85 ~~~~C~aC~tpkP   97 (98)
T 3gj7_B           85 EAVKCVACETPKP   97 (98)
T ss_dssp             TCSBCTTTCCBCC
T ss_pred             hcceecccCCCCC
Confidence            9999999999997

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*

Probab=99.06  E-value=4.6e-11  Score=71.54  Aligned_cols=30  Identities=47%  Similarity=1.085  Sum_probs=28.4

Q ss_pred             CCCCcccCCCCCCCccccCCcccccCCCCCCC
Q 039618           58 RPGDWYCSVGNCGAHNFASRSSCFKCGATKDD   89 (181)
Q Consensus        58 ~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~   89 (181)
                      ++|||+|+  .|+++||++|..|++|++||++
T Consensus         2 k~gDW~C~--~C~~~Nfa~r~~C~~C~~pr~~   31 (32)
T 2lk0_A            2 KFEDWLCN--KCCLNNFRKRLKCFRCGADKFD   31 (32)
T ss_dssp             CCSEEECT--TTCCEEETTCCBCTTTCCBTTC
T ss_pred             CCCCCCcC--cCcCCcChhcceecCCCCcCCC
Confidence            67999998  8999999999999999999985

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A

Probab=99.04  E-value=7.5e-11  Score=71.04  Aligned_cols=31  Identities=35%  Similarity=1.091  Sum_probs=29.2

Q ss_pred             CCCCceEcCCCCccceeccccccccCCCCCC
Q 039618            2 SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAG   32 (181)
Q Consensus         2 ~k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~   32 (181)
                      .++|||+|+.|+++||++|..|++|++||+.
T Consensus         2 ~~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~   32 (33)
T 2k1p_A            2 SSANDWQCKTCSNVNWARRSECNMCNTPKYA   32 (33)
T ss_dssp             CSSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred             CCCCCcccCCCCCccccccccccccCCcCCC
Confidence            4789999999999999999999999999975

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=98.88  E-value=7.3e-10  Score=71.13  Aligned_cols=32  Identities=44%  Similarity=1.103  Sum_probs=29.5

Q ss_pred             CCCCceEcC--CCCccceeccccccccCCCCCCC
Q 039618            2 SRPGDWNCR--SCNHLNFQRRDSCQRCGEPRAGD   33 (181)
Q Consensus         2 ~k~GdW~C~--~C~~~Nfa~r~~C~~C~~pkp~~   33 (181)
                      .++|||+|+  .|+++||++|+.|++|++||+.+
T Consensus        10 ~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~   43 (45)
T 1n0z_A           10 VSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             SCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             CCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence            368999999  89999999999999999999864

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1

Probab=98.66  E-value=5e-09  Score=63.56  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=25.7

Q ss_pred             CCCCCcccCCCCccchhhhhhhccccCCCcCCc
Q 039618          121 WKSGDWICTLGLVAMSTILQAEQNVLDAVHQGI  153 (181)
Q Consensus       121 ~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~  153 (181)
                      +++|+|+|+.|+++| .+...+|.+|+++|+|.
T Consensus         3 ~~~G~W~C~~C~v~N-~~~~~kC~aCet~Kpgt   34 (34)
T 3gj5_B            3 LGSGSWDCEVCLVQN-KADSTKCIACESAKPGT   34 (34)
T ss_dssp             ---CCEECTTTCCEE-CSSCSBCTTTCCBC---
T ss_pred             CCCCceECCeeEeEC-ccccCEEcccCCcCCCC
Confidence            579999999999999 99999999999999974

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=2.8e-08  Score=64.34  Aligned_cols=43  Identities=16%  Similarity=0.182  Sum_probs=38.3

Q ss_pred             CCCCCCCCcccCCCCccchhhhhhhccccCCCcCCceeeceeee
Q 039618          118 RSGWKSGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATSFRI  161 (181)
Q Consensus       118 ~~~~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~~~~~~~~~  161 (181)
                      +...++|.|+|+.|.++| .+.+.+|.+|++||++......+.|
T Consensus         4 ~~~~~~g~W~C~~C~v~N-~a~~~kC~aCetpKpgs~~~~~l~~   46 (47)
T 2ebq_A            4 GSSGVIGTWDCDTCLVQN-KPEAIKCVACETPKPGTCVKRALTL   46 (47)
T ss_dssp             SCCCCSSSEECSSSCCEE-CSSCSBCSSSCCBCSCSSCGGGSCC
T ss_pred             CcCCCCCceECCeeeccC-ccCCceecCcCCCCCCCccCccccC
Confidence            345678999999999999 9999999999999999988877755

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A

Probab=98.55  E-value=1.8e-08  Score=60.70  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=26.5

Q ss_pred             CCCCCcccCCCCccchhhhhhhccccCCCcCC
Q 039618          121 WKSGDWICTLGLVAMSTILQAEQNVLDAVHQG  152 (181)
Q Consensus       121 ~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g  152 (181)
                      .++|+|+|+.|.++| ++...+|++|+++|+|
T Consensus         3 ~~~g~W~C~~C~~~N-~~~~~kC~aC~tpkPg   33 (33)
T 3gj3_B            3 LGSGTWDCDTCLVQN-KPEAVKCVACETPKPG   33 (33)
T ss_dssp             ---CCEECTTTCCEE-CTTCSBCTTTCCBCC-
T ss_pred             CCCCceeCCcccCCC-ccccCEEcccCCCCCC
Confidence            368999999999999 9999999999999986

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=4.2e-08  Score=63.50  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.7

Q ss_pred             CCCCCCCCCcccCCCCccchhhhhhhccccCCCcCCcee
Q 039618          117 SRSGWKSGDWICTLGLVAMSTILQAEQNVLDAVHQGILQ  155 (181)
Q Consensus       117 ~~~~~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~~~  155 (181)
                      .++.+++|.|.|+.|+++| .+.+.+|.+|++|+++...
T Consensus         3 ~~fk~~~gsW~C~~C~v~N-~a~~~kC~aC~~pkpg~~p   40 (47)
T 2ebr_A            3 SGSSGPEGSWDCELCLVQN-KADSTKCLACESAKPGTKS   40 (47)
T ss_dssp             SSCSSCCSSCCCSSSCCCC-CSSCSBCSSSCCBCCCCCS
T ss_pred             ccccCCCCeeECCeeecCC-cCCcceecCcCCCCCCCcc
Confidence            4677889999999999999 9999999999999999864

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=1.6e-07  Score=63.03  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=32.9

Q ss_pred             CCCCCCCCCcccCCCCccchhhhhhhccccCCCcCC
Q 039618          117 SRSGWKSGDWICTLGLVAMSTILQAEQNVLDAVHQG  152 (181)
Q Consensus       117 ~~~~~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g  152 (181)
                      ..|.+++|.|.|+.|+++| .+...+|.+|+++|+|
T Consensus        23 ~~FK~~~GsWeC~~C~V~N-~a~~~kC~ACetpKPG   57 (57)
T 2ebv_A           23 DKFKRPIGSWECSVCCVSN-NAEDNKCVSCMSEKPG   57 (57)
T ss_dssp             SCCCCCSSSCCCSSSCCCC-CSSCSBCSSSCCBCCC
T ss_pred             HhcCCCCCeeeCCeeEccC-ccCCceeeEcCCcCCC
Confidence            5788899999999999999 9999999999999986

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1

Probab=98.22  E-value=4.8e-07  Score=54.76  Aligned_cols=31  Identities=26%  Similarity=0.713  Sum_probs=25.8

Q ss_pred             CCCCceEcCCCCccceeccccccccCCCCCC
Q 039618            2 SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAG   32 (181)
Q Consensus         2 ~k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~   32 (181)
                      .++|+|+|..|.++|.+...+|..|.+|||.
T Consensus         3 ~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg   33 (34)
T 3gj5_B            3 LGSGSWDCEVCLVQNKADSTKCIACESAKPG   33 (34)
T ss_dssp             ---CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred             CCCCceECCeeEeECccccCEEcccCCcCCC
Confidence            3679999999999999999999999999985

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A

Probab=98.12  E-value=1.1e-06  Score=52.88  Aligned_cols=30  Identities=30%  Similarity=0.828  Sum_probs=26.5

Q ss_pred             CCCceEcCCCCccceeccccccccCCCCCC
Q 039618            3 RPGDWNCRSCNHLNFQRRDSCQRCGEPRAG   32 (181)
Q Consensus         3 k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~   32 (181)
                      ++|+|+|+.|.++|.+...+|..|.+|||.
T Consensus         4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg   33 (33)
T 3gj3_B            4 GSGTWDCDTCLVQNKPEAVKCVACETPKPG   33 (33)
T ss_dssp             --CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred             CCCceeCCcccCCCccccCEEcccCCCCCC
Confidence            579999999999999999999999999973

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.08  E-value=2.1e-06  Score=55.46  Aligned_cols=34  Identities=26%  Similarity=0.651  Sum_probs=31.0

Q ss_pred             CCCCCceEcCCCCccceeccccccccCCCCCCCC
Q 039618            1 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDR   34 (181)
Q Consensus         1 ~~k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~~~   34 (181)
                      ++++|.|.|..|.+.|.+...+|+.|++||+...
T Consensus         6 ~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~   39 (47)
T 2ebq_A            6 SGVIGTWDCDTCLVQNKPEAIKCVACETPKPGTC   39 (47)
T ss_dssp             CCCSSSEECSSSCCEECSSCSBCSSSCCBCSCSS
T ss_pred             CCCCCceECCeeeccCccCCceecCcCCCCCCCc
Confidence            4678999999999999999999999999998753

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.89  E-value=1.1e-05  Score=52.01  Aligned_cols=36  Identities=28%  Similarity=0.671  Sum_probs=32.6

Q ss_pred             CCCCCCCCcccCCCCCCCccccCCcccccCCCCCCCCC
Q 039618           54 GPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSA   91 (181)
Q Consensus        54 ~~~~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~~   91 (181)
                      .+...+|.|.|.  .|.+.|.+.+..|..|++|||...
T Consensus         4 ~fk~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~   39 (47)
T 2ebr_A            4 GSSGPEGSWDCE--LCLVQNKADSTKCLACESAKPGTK   39 (47)
T ss_dssp             SCSSCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred             cccCCCCeeECC--eeecCCcCCcceecCcCCCCCCCc
Confidence            466788999999  999999999999999999999754

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.82  E-value=2.1e-05  Score=52.67  Aligned_cols=39  Identities=31%  Similarity=0.635  Sum_probs=36.0

Q ss_pred             CCCCCCCCCCCCCCcccCCCCCCCccccCCcccccCCCCCC
Q 039618           48 SFGFSTGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKD   88 (181)
Q Consensus        48 ~~g~~~~~~~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp   88 (181)
                      ..||+..+..+.|.|.|.  .|.+.|.+....|..|++|||
T Consensus        18 ~~gfg~~FK~~~GsWeC~--~C~V~N~a~~~kC~ACetpKP   56 (57)
T 2ebv_A           18 TLGFGDKFKRPIGSWECS--VCCVSNNAEDNKCVSCMSEKP   56 (57)
T ss_dssp             CCSCCSCCCCCSSSCCCS--SSCCCCCSSCSBCSSSCCBCC
T ss_pred             CCCHHHhcCCCCCeeeCC--eeEccCccCCceeeEcCCcCC
Confidence            346778899999999999  999999999999999999997

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.26  E-value=0.00017  Score=47.41  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=30.0

Q ss_pred             CCCCCCCcccCCCCccchhhhhhhccccCCCcCCc
Q 039618          119 SGWKSGDWICTLGLVAMSTILQAEQNVLDAVHQGI  153 (181)
Q Consensus       119 ~~~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~  153 (181)
                      ....++.|.|+.|..+| ++...+|.+|..++++.
T Consensus         5 ~~~~~~~W~C~~CT~~N-~~~~~~C~~C~~pr~~s   38 (53)
T 2d9g_A            5 SSGDEGYWDCSVCTFRN-SAEAFKCMMCDVRKGTS   38 (53)
T ss_dssp             CSSCCCCEECSSSCCEE-CSSCSSCSSSCCCCCCC
T ss_pred             CCCCCCCcCCCCCccCC-CCCCCccCCCCCcCCcc
Confidence            34567899999999999 99999999999999863

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.70  E-value=0.0045  Score=40.48  Aligned_cols=33  Identities=33%  Similarity=0.616  Sum_probs=29.5

Q ss_pred             CCCCCcccCCCCCCCccccCCcccccCCCCCCCCC
Q 039618           57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSA   91 (181)
Q Consensus        57 ~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~~   91 (181)
                      ..++.|.|+  .|.++|......|.+|..||+...
T Consensus         7 ~~~~~W~C~--~CT~~N~~~~~~C~~C~~pr~~s~   39 (53)
T 2d9g_A            7 GDEGYWDCS--VCTFRNSAEAFKCMMCDVRKGTST   39 (53)
T ss_dssp             SCCCCEECS--SSCCEECSSCSSCSSSCCCCCCCC
T ss_pred             CCCCCcCCC--CCccCCCCCCCccCCCCCcCCccc
Confidence            456789999  999999999999999999998644

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C

Probab=95.82  E-value=0.005  Score=36.35  Aligned_cols=28  Identities=36%  Similarity=0.924  Sum_probs=25.8

Q ss_pred             CCceEcCCCCccceeccccccccCCCCC
Q 039618            4 PGDWNCRSCNHLNFQRRDSCQRCGEPRA   31 (181)
Q Consensus         4 ~GdW~C~~C~~~Nfa~r~~C~~C~~pkp   31 (181)
                      ...|.|+.|-++|......|..|..||+
T Consensus         6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~   33 (34)
T 3a9j_C            6 GAQWNCTACTFLNHPALIRCEQCEMPRH   33 (34)
T ss_dssp             CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred             CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence            3589999999999999999999999985

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A

Probab=95.49  E-value=0.0086  Score=34.60  Aligned_cols=27  Identities=30%  Similarity=0.887  Sum_probs=25.2

Q ss_pred             CCceEcCCCCccceeccccccccCCCC
Q 039618            4 PGDWNCRSCNHLNFQRRDSCQRCGEPR   30 (181)
Q Consensus         4 ~GdW~C~~C~~~Nfa~r~~C~~C~~pk   30 (181)
                      ...|.|+.|-++|......|..|+.|+
T Consensus         4 ~~~W~C~~CTf~N~~~~~~Ce~C~~~r   30 (31)
T 1nj3_A            4 SAMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             SCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred             CccccCCcccccCCCCCCccCCcCCCC
Confidence            458999999999999999999999987

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C

Probab=95.06  E-value=0.015  Score=34.20  Aligned_cols=28  Identities=21%  Similarity=0.651  Sum_probs=25.8

Q ss_pred             CCCcccCCCCCCCccccCCcccccCCCCCC
Q 039618           59 PGDWYCSVGNCGAHNFASRSSCFKCGATKD   88 (181)
Q Consensus        59 ~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp   88 (181)
                      ...|.|+  .|..+|......|..|..+++
T Consensus         6 ~~~W~C~--~CT~~N~~~~~~Ce~C~~~r~   33 (34)
T 3a9j_C            6 GAQWNCT--ACTFLNHPALIRCEQCEMPRH   33 (34)
T ss_dssp             CCCEECT--TTCCEECTTCSBCTTTCCBSC
T ss_pred             CCcCCCC--CCccccCCCCCeeCCCCCcCc
Confidence            4589999  999999999999999999985

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A

Probab=94.91  E-value=0.023  Score=32.71  Aligned_cols=27  Identities=22%  Similarity=0.632  Sum_probs=24.9

Q ss_pred             CCCcccCCCCCCCccccCCcccccCCCCC
Q 039618           59 PGDWYCSVGNCGAHNFASRSSCFKCGATK   87 (181)
Q Consensus        59 ~GdW~C~~~~C~~~Nfa~R~~C~~C~apk   87 (181)
                      ...|.|+  .|..+|......|..|+.++
T Consensus         4 ~~~W~C~--~CTf~N~~~~~~Ce~C~~~r   30 (31)
T 1nj3_A            4 SAMWACQ--HCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             SCCEECS--SSCCEECSSCSSCSSSCCCC
T ss_pred             CccccCC--cccccCCCCCCccCCcCCCC
Confidence            3589999  99999999999999999987

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}

Probab=93.87  E-value=0.03  Score=36.46  Aligned_cols=29  Identities=28%  Similarity=0.776  Sum_probs=26.9

Q ss_pred             CceEcCCCCccceeccccccccCCCCCCC
Q 039618            5 GDWNCRSCNHLNFQRRDSCQRCGEPRAGD   33 (181)
Q Consensus         5 GdW~C~~C~~~Nfa~r~~C~~C~~pkp~~   33 (181)
                      ..|.|+.|-++|-.....|..|..+++..
T Consensus         9 ~~W~Cp~CTf~N~p~~~~CemC~~prp~~   37 (52)
T 2crc_A            9 VGWQCPGCTFINKPTRPGCEMCCRARPEA   37 (52)
T ss_dssp             SSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred             CCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence            48999999999999999999999999864

>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A

Probab=93.82  E-value=0.019  Score=36.64  Aligned_cols=35  Identities=20%  Similarity=0.165  Sum_probs=30.5

Q ss_pred             CCCcccCCCCccchhhhhhhccccCCCcCCceeece
Q 039618          123 SGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATS  158 (181)
Q Consensus       123 ~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~~~~~~  158 (181)
                      ++.|+|+.|...| -+..-.|.+|-+.+.+=+..+|
T Consensus        11 ~D~WkC~~C~~~N-~Pl~r~C~rCw~LRk~Wlp~~~   45 (46)
T 2c6a_A           11 ADYWKCTSCNEMN-PPLPSHCNRCWALRENWLPEDK   45 (46)
T ss_dssp             GGCEECTTTCCEE-CSSCSSCTTTCCCCSSCSCCCC
T ss_pred             cceEecccccccC-CCccchhhHHHhhccccCCccc
Confidence            3899999999999 7889999999999988776654

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}

Probab=92.84  E-value=0.14  Score=33.24  Aligned_cols=30  Identities=27%  Similarity=0.716  Sum_probs=27.2

Q ss_pred             CCCcccCCCCCCCccccCCcccccCCCCCCCC
Q 039618           59 PGDWYCSVGNCGAHNFASRSSCFKCGATKDDS   90 (181)
Q Consensus        59 ~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~   90 (181)
                      ...|.|+  .|..+|-.....|.+|..+++..
T Consensus         8 ~~~W~Cp--~CTf~N~p~~~~CemC~~prp~~   37 (52)
T 2crc_A            8 PVGWQCP--GCTFINKPTRPGCEMCCRARPEA   37 (52)
T ss_dssp             SSSBCCT--TTCCCBCTTCSSCSSSCCCCCTT
T ss_pred             CCCccCC--CcccccCCCCCeeCCCCCcCCcc
Confidence            3489999  99999999999999999999864

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*

Probab=92.46  E-value=0.071  Score=36.18  Aligned_cols=29  Identities=28%  Similarity=0.779  Sum_probs=26.9

Q ss_pred             CceEcCCCCccceeccccccccCCCCCCC
Q 039618            5 GDWNCRSCNHLNFQRRDSCQRCGEPRAGD   33 (181)
Q Consensus         5 GdW~C~~C~~~Nfa~r~~C~~C~~pkp~~   33 (181)
                      ..|.|+.|-+.|......|..|..+++..
T Consensus         7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~   35 (64)
T 3b08_B            7 VGWQCPGCTFINKPTRPGCEMCCRARPET   35 (64)
T ss_dssp             CSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred             CCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence            48999999999999999999999999864

>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A

Probab=89.55  E-value=0.2  Score=31.81  Aligned_cols=28  Identities=36%  Similarity=0.814  Sum_probs=25.4

Q ss_pred             CCceEcCCCCccceeccccccccCCCCC
Q 039618            4 PGDWNCRSCNHLNFQRRDSCQRCGEPRA   31 (181)
Q Consensus         4 ~GdW~C~~C~~~Nfa~r~~C~~C~~pkp   31 (181)
                      ...|.|+.|...|......|++|-+-|.
T Consensus        11 ~D~WkC~~C~~~N~Pl~r~C~rCw~LRk   38 (46)
T 2c6a_A           11 ADYWKCTSCNEMNPPLPSHCNRCWALRE   38 (46)
T ss_dssp             GGCEECTTTCCEECSSCSSCTTTCCCCS
T ss_pred             cceEecccccccCCCccchhhHHHhhcc
Confidence            3579999999999999999999998874

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*

Probab=89.11  E-value=0.27  Score=33.29  Aligned_cols=30  Identities=27%  Similarity=0.720  Sum_probs=27.1

Q ss_pred             CCCcccCCCCCCCccccCCcccccCCCCCCCC
Q 039618           59 PGDWYCSVGNCGAHNFASRSSCFKCGATKDDS   90 (181)
Q Consensus        59 ~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~   90 (181)
                      .-.|.|+  .|.++|-.....|..|+.+++..
T Consensus         6 ~~~W~CP--~CTf~N~p~~p~CEmC~~prp~~   35 (64)
T 3b08_B            6 PVGWQCP--GCTFINKPTRPGCEMCCRARPET   35 (64)
T ss_dssp             CCSEECT--TTCCEECTTCSBCTTTCCBCCSS
T ss_pred             CCCCcCC--CccccCCCCCCccCcCCCCCCcc
Confidence            4579999  99999999999999999999854

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=84.22  E-value=0.2  Score=46.72  Aligned_cols=82  Identities=17%  Similarity=0.326  Sum_probs=0.0

Q ss_pred             CCceEcCCCCccceec---------cccccccCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCcc
Q 039618            4 PGDWNCRSCNHLNFQR---------RDSCQRCGEPRAGDRSGDY-GSFGGRGSSSFGFSTGPDVRPGDWYCSVGNCGAHN   73 (181)
Q Consensus         4 ~GdW~C~~C~~~Nfa~---------r~~C~~C~~pkp~~~~~~~-~~~gg~~~~~~g~~~~~~~~~GdW~C~~~~C~~~N   73 (181)
                      ...|+|+-|.+.|-..         .-.|..|+.+.+....... .....+....  ..........+-.|+  .|-++|
T Consensus       115 ~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~--~~~~~~~~~~~~~CP--~CTF~N  190 (566)
T 1w7p_D          115 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNA--NPQNQFGVNSENICP--ACTFAN  190 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcc--cCccccccccCCCCC--cccccC
Confidence            3589999999999852         2358899988653321100 0000000000  000011112456798  999999


Q ss_pred             ccCCcccccCCCCCCC
Q 039618           74 FASRSSCFKCGATKDD   89 (181)
Q Consensus        74 fa~R~~C~~C~apkp~   89 (181)
                      -.+-..|..|+++-+.
T Consensus       191 HPsl~~CEiCg~~L~~  206 (566)
T 1w7p_D          191 HPQIGNCEICGHRLPN  206 (566)
T ss_dssp             ----------------
T ss_pred             ChhhhcccccCCcCCC
Confidence            9999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d1n0za_	45	g.41.11.1 (A:) Znf265, first zinc-finger domain {H	5e-10
d1n0za_	45	g.41.11.1 (A:) Znf265, first zinc-finger domain {H	2e-06

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 5e-10
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 52 STGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSA 91
          +    V  GDW C    CG  NFA R+SC +CG  K    
Sbjct: 5  TKNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTGP 44

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 2e-06
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 3  RPGDWNCR--SCNHLNFQRRDSCQRCGEPRAG 32
            GDW C    C ++NF RR SC RCG  +  
Sbjct: 11 SDGDWICPDKKCGNVNFARRTSCDRCGREKTT 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d1n0za_	45	Znf265, first zinc-finger domain {Human (Homo sapi	99.27
d1n0za_	45	Znf265, first zinc-finger domain {Human (Homo sapi	98.92
d2gqea1	29	Nuclear pore complex protein nup153 {Human (Homo s	98.28
d2gqea1	29	Nuclear pore complex protein nup153 {Human (Homo s	97.93
d1q5wa_	31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	90.55
d1q5wa_	31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	86.35
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	84.23
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	83.73
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	81.21

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.2e-12  Score=82.57  Aligned_cols=37  Identities=43%  Similarity=0.902  Sum_probs=33.8

Q ss_pred             CCCCCCCCcccCCCCCCCccccCCcccccCCCCCCCC
Q 039618           54 GPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDS   90 (181)
Q Consensus        54 ~~~~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~   90 (181)
                      .+..++|||+|+++.|+++|||+|++|++|++||++.
T Consensus         7 n~~~~~GDW~C~~~~C~~~NFa~R~~C~rC~~~r~~g   43 (45)
T d1n0za_           7 NFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             SCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             CCCCCCCCccCCCCCCCCeeccccCcccCCCCcCCCC
Confidence            4678899999998899999999999999999999864

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.1e-10  Score=72.20  Aligned_cols=32  Identities=44%  Similarity=1.103  Sum_probs=29.2

Q ss_pred             CCCCceEcC--CCCccceeccccccccCCCCCCC
Q 039618            2 SRPGDWNCR--SCNHLNFQRRDSCQRCGEPRAGD   33 (181)
Q Consensus         2 ~k~GdW~C~--~C~~~Nfa~r~~C~~C~~pkp~~   33 (181)
                      .++|||+|+  .|+++||++|+.|++|++||+++
T Consensus        10 ~~~GDW~C~~~~C~~~NFa~R~~C~rC~~~r~~g   43 (45)
T d1n0za_          10 VSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             SCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             CCCCCccCCCCCCCCeeccccCcccCCCCcCCCC
Confidence            368999997  79999999999999999999865

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.1e-07  Score=54.25  Aligned_cols=28  Identities=18%  Similarity=0.230  Sum_probs=26.3

Q ss_pred             CCCcccCCCCccchhhhhhhccccCCCcC
Q 039618          123 SGDWICTLGLVAMSTILQAEQNVLDAVHQ  151 (181)
Q Consensus       123 ~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~  151 (181)
                      -|.|.|+.|+++| .+...+|.+|++|||
T Consensus         2 ~GsWeC~~C~v~N-~~~~~~CvAC~tpkP   29 (29)
T d2gqea1           2 IGTWDCDTCLVQN-KPEAIKCVACETPKP   29 (29)
T ss_dssp             CCCEECSSSCCEE-CTTCSBCSSSCCBCC
T ss_pred             cceeECCceEeEC-hhhCCEEeecCCCCC
Confidence            3899999999999 999999999999986

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2e-06  Score=48.83  Aligned_cols=28  Identities=29%  Similarity=0.774  Sum_probs=26.7

Q ss_pred             CCceEcCCCCccceeccccccccCCCCC
Q 039618            4 PGDWNCRSCNHLNFQRRDSCQRCGEPRA   31 (181)
Q Consensus         4 ~GdW~C~~C~~~Nfa~r~~C~~C~~pkp   31 (181)
                      -|.|.|..|.++|.+..++|..|++|||
T Consensus         2 ~GsWeC~~C~v~N~~~~~~CvAC~tpkP   29 (29)
T d2gqea1           2 IGTWDCDTCLVQNKPEAIKCVACETPKP   29 (29)
T ss_dssp             CCCEECSSSCCEECTTCSBCSSSCCBCC
T ss_pred             cceeECCceEeEChhhCCEEeecCCCCC
Confidence            3899999999999999999999999997

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.55  E-value=0.062  Score=29.76  Aligned_cols=27  Identities=30%  Similarity=0.887  Sum_probs=24.8

Q ss_pred             CCceEcCCCCccceeccccccccCCCC
Q 039618            4 PGDWNCRSCNHLNFQRRDSCQRCGEPR   30 (181)
Q Consensus         4 ~GdW~C~~C~~~Nfa~r~~C~~C~~pk   30 (181)
                      ..-|.|.-|-++|-..-..|.+|.-||
T Consensus         4 samWsC~HCTf~N~pgtd~CeMC~LPr   30 (31)
T d1q5wa_           4 SAMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CCCEECSSSCCEECTTCSBCTTTCCBC
T ss_pred             cceeEeeeeeeecCCCCCcchhhccCC
Confidence            357999999999999999999999887

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.35  E-value=0.2  Score=27.59  Aligned_cols=27  Identities=22%  Similarity=0.632  Sum_probs=24.5

Q ss_pred             CCCcccCCCCCCCccccCCcccccCCCCC
Q 039618           59 PGDWYCSVGNCGAHNFASRSSCFKCGATK   87 (181)
Q Consensus        59 ~GdW~C~~~~C~~~Nfa~R~~C~~C~apk   87 (181)
                      ..-|.|.  .|.++|-..-..|.+|.-|+
T Consensus         4 samWsC~--HCTf~N~pgtd~CeMC~LPr   30 (31)
T d1q5wa_           4 SAMWACQ--HCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CCCEECS--SSCCEECTTCSBCTTTCCBC
T ss_pred             cceeEee--eeeeecCCCCCcchhhccCC
Confidence            3579999  99999999999999999886

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=84.23  E-value=0.14  Score=29.49  Aligned_cols=27  Identities=4%  Similarity=-0.169  Sum_probs=21.1

Q ss_pred             CcccCCCCccchhhhhhhccccCCCcC
Q 039618          125 DWICTLGLVAMSTILQAEQNVLDAVHQ  151 (181)
Q Consensus       125 DW~C~~C~~~N~~a~r~~Cn~c~~~~~  151 (181)
                      -|+|+.||.+-.-.--.+|-+|.+++.
T Consensus         5 ~~vC~vCGyi~~g~~Pe~CPvCg~~~~   31 (36)
T d1yuza2           5 FHLCPICGYIHKGEDFEKCPICFRPKD   31 (36)
T ss_dssp             EEECSSSCCEEESSCCSBCTTTCCBGG
T ss_pred             EEECCCCCCEeeCCCCCcCCCCCCcHH
Confidence            599999999872234578999998864

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.73  E-value=0.18  Score=29.17  Aligned_cols=31  Identities=13%  Similarity=0.067  Sum_probs=22.8

Q ss_pred             CcccCCCCccchhhhhhhccccCCCcCCcee
Q 039618          125 DWICTLGLVAMSTILQAEQNVLDAVHQGILQ  155 (181)
Q Consensus       125 DW~C~~C~~~N~~a~r~~Cn~c~~~~~g~~~  155 (181)
                      -|.|+.||.+.--.--.+|-+|.+++.--++
T Consensus         5 ~~~C~vCG~i~~g~~P~~CPvCg~~~~~F~~   35 (37)
T d1nnqa2           5 VYICPICGYTAVDEAPEYCPVCGAPKEKFVV   35 (37)
T ss_dssp             EEECTTTCCEEESCCCSBCTTTCCBGGGSEE
T ss_pred             EEECCCCCCEecCCCCCcCCCCCCcHHHcEE
Confidence            4999999998722233689999998764443

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.21  E-value=0.36  Score=27.75  Aligned_cols=26  Identities=23%  Similarity=0.682  Sum_probs=21.6

Q ss_pred             CceEcCCCCccceec-cccccccCCCC
Q 039618            5 GDWNCRSCNHLNFQR-RDSCQRCGEPR   30 (181)
Q Consensus         5 GdW~C~~C~~~Nfa~-r~~C~~C~~pk   30 (181)
                      --|.|+.|++.-... ...|.-|++|+
T Consensus         4 ~~~~C~vCG~i~~g~~P~~CPvCg~~~   30 (37)
T d1nnqa2           4 KVYICPICGYTAVDEAPEYCPVCGAPK   30 (37)
T ss_dssp             CEEECTTTCCEEESCCCSBCTTTCCBG
T ss_pred             cEEECCCCCCEecCCCCCcCCCCCCcH
Confidence            369999999987764 37899999986