Citrus Sinensis ID: 039627

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----

ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGEDGMKVQ

ccEEEEccccccccccccccccccccccccEEEEEccEEEEHHHHHccccccccccHHHHHHHHHcccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEccccHHHHHHHHHHcccEEEcccccccc

cccEEEcccccccccHHEEcccccccccccEEEEEEEEEccHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHcccccEEEEEccHHHHHHHHHHHHcccccHHHHHHHHHcccHEEEEccccccc

ilgvydwsgcnpmppefwkfpsflpispgkllcycrltympmsylygkrfvgpitpLILQLREEiytqpyrdihwskmrhfcakediffphtsvqnLLWDTLYNVVepvlnrwplnqlREKSLEIAMNHIhyedeasrymtigcvekplnmlscwvedpnsdyfKKHLSRISEYLWvgedgmkvq

ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEylwvgedgmkvq

ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGEDGMKVQ

**GVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVG*******

ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGEDGMKV*

ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGEDGMKVQ

ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGED*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGEDGMKVQ

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		185	2.2.26 [Sep-21-2011]
E7DN63		761	Beta-amyrin synthase OS=S	N/A	no	1.0	0.243	0.713	7e-81
Q2XPU7		769	Lupeol synthase OS=Ricinu	N/A	no	1.0	0.240	0.691	2e-80
A8CDT3		761	Lupeol synthase OS=Brugui	N/A	no	1.0	0.243	0.702	5e-80
O82140		763	Beta-Amyrin Synthase 1 OS	N/A	no	1.0	0.242	0.713	9e-80
E2IUA6		779	Taraxerol synthase OS=Kal	N/A	no	1.0	0.237	0.698	1e-79
Q8W3Z1		779	Beta-amyrin synthase OS=B	N/A	no	1.0	0.237	0.698	1e-79
A8CDT2		759	Beta-amyrin synthase OS=B	N/A	no	1.0	0.243	0.715	3e-79
O82146		761	Beta-Amyrin Synthase 2 OS	N/A	no	1.0	0.243	0.697	3e-79
E7DN64		763	Delta-amyrin synthase OS=	N/A	no	1.0	0.242	0.686	2e-78
Q9MB42		765	Beta-amyrin synthase OS=G	N/A	no	1.0	0.241	0.693	5e-78

>sp\|E7DN63\|BAMS_SOLLC Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1	Back alignment and function desciption

 Score =  299 bits (765), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 132/185 (71%), Positives = 157/185 (84%)

Query: 1   ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQ 60
           ILGV++W G NPMPPEFW  PSFLP+ P K+ CYCR+ YMPMSYLYGKRFVGPITPLILQ
Sbjct: 226 ILGVFEWIGTNPMPPEFWILPSFLPVHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQ 285

Query: 61  LREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLRE 120
           LREE+Y +PY +I+W K+RH CAKED+++PH  VQ+L+WD+LY   EP+L RWP N+LR 
Sbjct: 286 LREELYDRPYDEINWKKVRHVCAKEDLYYPHPLVQDLMWDSLYICTEPLLTRWPFNKLRN 345

Query: 121 KSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGED 180
           K+LE+ M HIHYEDE SRY+TIGCVEK L ML+CWVEDPN DYFKKHL+RI +YLWV ED
Sbjct: 346 KALEVTMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHLARIPDYLWVAED 405

Query: 181 GMKVQ 185
           GMK+Q
Sbjct: 406 GMKMQ 410

Oxidosqualene cyclase converting oxidosqualene into beta-amyrin, generating five rings and eight asymmetric centers in a single transformation.
Solanum lycopersicum (taxid: 4081)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 9

>sp\|Q2XPU7\|LUPS_RICCO Lupeol synthase OS=Ricinus communis PE=1 SV=1	Back alignment and function description

>sp\|A8CDT3\|LUPS_BRUGY Lupeol synthase OS=Bruguiera gymnorhiza GN=LUS PE=1 SV=1	Back alignment and function description

>sp\|O82140\|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1	Back alignment and function description

>sp\|E2IUA6\|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1	Back alignment and function description

>sp\|Q8W3Z1\|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1	Back alignment and function description

>sp\|A8CDT2\|BAS_BRUGY Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1	Back alignment and function description

>sp\|O82146\|BAMS2_PANGI Beta-Amyrin Synthase 2 OS=Panax ginseng GN=OSCPNY2 PE=2 SV=1	Back alignment and function description

>sp\|E7DN64\|DAMS_SOLLC Delta-amyrin synthase OS=Solanum lycopersicum GN=TTS2 PE=1 SV=1	Back alignment and function description

>sp\|Q9MB42\|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		185
300431227		763	beta-amyrin synthase [Aralia elata]	1.0	0.242	0.724	3e-80
224105317		707	predicted protein [Populus trichocarpa]	1.0	0.261	0.697	3e-80
116292146		761	multifunctional triterpene synthase [Kan	1.0	0.243	0.713	1e-79
350538549		761	beta-amyrin synthase [Solanum lycopersic	1.0	0.243	0.713	4e-79
255572809		741	Cycloartenol synthase, putative [Ricinus	1.0	0.249	0.691	7e-79
122210891		769	RecName: Full=Lupeol synthase gi\|8246880	1.0	0.240	0.691	7e-79
392621787		763	lupeol synthase [Eleutherococcus trifoli	1.0	0.242	0.708	9e-79
353558692		761	RecName: Full=Lupeol synthase; Short=BgL	1.0	0.243	0.702	3e-78
75220214		763	RecName: Full=Beta-Amyrin Synthase 1 gi\|	1.0	0.242	0.713	4e-78
403377890		779	RecName: Full=Taraxerol synthase; Short=	1.0	0.237	0.698	5e-78

>gi\|300431227\|gb\|ADK12003.1\| beta-amyrin synthase [Aralia elata]	Back alignment and taxonomy information

 Score =  302 bits (774), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 158/185 (85%)

Query: 1   ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQ 60
           ILGVY+W+G NPMPPEFW  PSFLP+ P K+ CYCR+ YMPMSYLYGKRFVGPITPLILQ
Sbjct: 228 ILGVYEWTGSNPMPPEFWILPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQ 287

Query: 61  LREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLRE 120
           LREE+Y QPY +I+W K RH CAKEDI++PH  +Q+LLWD+LY + EP+L RWP N+LRE
Sbjct: 288 LREELYAQPYNEINWRKTRHVCAKEDIYYPHPLIQDLLWDSLYVLTEPLLTRWPFNKLRE 347

Query: 121 KSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGED 180
           K+L+  M HIHYEDE SRY+TIGCVEK L ML+CWVEDPN DYFKKHL+RI +Y+WV ED
Sbjct: 348 KALQTTMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHLARIPDYIWVAED 407

Query: 181 GMKVQ 185
           GMK+Q
Sbjct: 408 GMKMQ 412

Source: Aralia elata

Species: Aralia elata

Genus: Aralia

Family: Araliaceae

Order: Apiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224105317\|ref\|XP_002333832.1\| predicted protein [Populus trichocarpa] gi\|222838872\|gb\|EEE77223.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|116292146\|dbj\|BAF35580.1\| multifunctional triterpene synthase [Kandelia candel]	Back alignment and taxonomy information

>gi\|350538549\|ref\|NP_001234604.1\| beta-amyrin synthase [Solanum lycopersicum] gi\|357580425\|sp\|E7DN63.1\|BAMS_SOLLC RecName: Full=Beta-amyrin synthase; AltName: Full=Triterpenoid synthase 1; Short=SlTTS1 gi\|315613943\|gb\|ADU52574.1\| beta-amyrin synthase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|255572809\|ref\|XP_002527337.1\| Cycloartenol synthase, putative [Ricinus communis] gi\|223533337\|gb\|EEF35089.1\| Cycloartenol synthase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|122210891\|sp\|Q2XPU7.1\|LUPS_RICCO RecName: Full=Lupeol synthase gi\|82468803\|gb\|ABB76766.1\| lupeol synthase [Ricinus communis]	Back alignment and taxonomy information

>gi\|392621787\|gb\|AFM82492.1\| lupeol synthase [Eleutherococcus trifoliatus]	Back alignment and taxonomy information

>gi\|353558692\|sp\|A8CDT3.1\|LUPS_BRUGY RecName: Full=Lupeol synthase; Short=BgLUS gi\|157679393\|dbj\|BAF80444.1\| lupeol synthase [Bruguiera gymnorhiza]	Back alignment and taxonomy information

>gi\|75220214\|sp\|O82140.1\|BAMS1_PANGI RecName: Full=Beta-Amyrin Synthase 1 gi\|3688600\|dbj\|BAA33461.1\| beta-Amyrin Synthase [Panax ginseng]	Back alignment and taxonomy information

>gi\|403377890\|sp\|E2IUA6.1\|TARS_KALDA RecName: Full=Taraxerol synthase; Short=KdTAS gi\|300807974\|gb\|ADK35123.1\| taraxerol synthase [Kalanchoe daigremontiana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		185
UNIPROTKB\|A8CDT2		759	BAS "Beta-amyrin synthase" [Br	1.0	0.243	0.715	4.8e-78
UNIPROTKB\|Q8W3Z1		779	OSCBPY "Beta-amyrin synthase"	1.0	0.237	0.698	6.2e-78
UNIPROTKB\|E2IUA6		779	E2IUA6 "Taraxerol synthase" [K	1.0	0.237	0.698	7.9e-78
UNIPROTKB\|Q2XPU7		769	Q2XPU7 "Lupeol synthase" [Rici	1.0	0.240	0.691	1.3e-77
UNIPROTKB\|A8CDT3		761	LUS "Lupeol synthase" [Bruguie	1.0	0.243	0.702	4.3e-77
UNIPROTKB\|E2IUA9		765	E2IUA9 "Lupeol synthase" [Kala	1.0	0.241	0.693	1e-75
TAIR\|locus:2207315		759	BAS "beta-amyrin synthase" [Ar	1.0	0.243	0.704	2.1e-75
TAIR\|locus:504956092		769	CAMS1 "AT1G78955" [Arabidopsis	1.0	0.240	0.704	1.9e-74
UNIPROTKB\|E2IUA7		767	E2IUA7 "Glutinol synthase" [Ka	1.0	0.241	0.682	2.5e-74
UNIPROTKB\|F8WQD0		761	SHS1 "Shionone synthase" [Aste	1.0	0.243	0.681	5.1e-74

UNIPROTKB\|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)]	Back alignment and assigned GO terms

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 133/186 (71%), Positives = 157/186 (84%)

Query:     1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQ 60
             ILGVYDWSG NPMPPEFW  PSFLP+ P K+ CYCR+ YMPMSYLYGKRFVGPITPLI Q
Sbjct:   226 ILGVYDWSGSNPMPPEFWMLPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLIQQ 285

Query:    61 LREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQL-R 119
             LREE++TQPY  I+W K RH CA ED+++PH  VQ+L+WD LY   EP+L RWPLN++ R
Sbjct:   286 LREELFTQPYDQINWKKTRHQCAPEDLYYPHPFVQDLIWDCLYIFTEPLLTRWPLNEIIR 345

Query:   120 EKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGE 179
             +K+LE+ M HIHYEDE+SRY+TIGCVEK L ML+CWVEDPN DYFKKHL+RI +Y+WV E
Sbjct:   346 KKALEVTMKHIHYEDESSRYITIGCVEKVLCMLACWVEDPNGDYFKKHLARIPDYIWVAE 405

Query:   180 DGMKVQ 185
             DGMK+Q
Sbjct:   406 DGMKMQ 411

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0042300 "beta-amyrin synthase activity" evidence=IDA

UNIPROTKB\|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)]	Back alignment and assigned GO terms

UNIPROTKB\|A8CDT3 LUS "Lupeol synthase" [Bruguiera gymnorhiza (taxid:39984)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

TAIR\|locus:2207315 BAS "beta-amyrin synthase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504956092 CAMS1 "AT1G78955" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA7 E2IUA7 "Glutinol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

UNIPROTKB\|F8WQD0 SHS1 "Shionone synthase" [Aster tataricus (taxid:588669)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B6EXY6	LUP4_ARATH	5, ., 4, ., 9, 9, ., 3, 9	0.7043	1.0	0.2437	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.4.99	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.830.3.1	hypothetical protein (707 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_IV1345	hypothetical protein (413 aa)	•	0.414

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		185
PLN02993		763	PLN02993, PLN02993, lupeol synthase	1e-107
PLN03012		759	PLN03012, PLN03012, Camelliol C synthase	1e-104
cd02892		634	cd02892, SQCY_1, Squalene cyclase (SQCY) domain su	7e-71
TIGR01787		621	TIGR01787, squalene_cyclas, squalene/oxidosqualene	2e-54
TIGR03463		634	TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	6e-42

>gnl\|CDD\|215537 PLN02993, PLN02993, lupeol synthase	Back alignment and domain information

 Score =  324 bits (832), Expect = e-107
 Identities = 130/186 (69%), Positives = 157/186 (84%), Gaps = 1/186 (0%)

Query: 1   ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQ 60
           ILG+YDWSG NPMPPE W  PSFLPI  GK LCY R+ YMPMSYLYGKRFVGPITPLI+ 
Sbjct: 227 ILGIYDWSGTNPMPPEIWLLPSFLPIHLGKTLCYTRMVYMPMSYLYGKRFVGPITPLIML 286

Query: 61  LREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQL-R 119
           LREE++ QPY +I+W+K R  CAKED+++PH  VQ+L+WDTL+N VEP L RWPLN+L R
Sbjct: 287 LREELHLQPYEEINWNKARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFLTRWPLNKLVR 346

Query: 120 EKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGE 179
           EK+L++AM HIHYEDE S Y+TIGCVEK L ML+CW+E+PN D+FKKHL+RI +Y+WV E
Sbjct: 347 EKALQVAMKHIHYEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLARIPDYMWVAE 406

Query: 180 DGMKVQ 185
           DGMK+Q
Sbjct: 407 DGMKMQ 412

Length = 763

>gnl\|CDD\|166653 PLN03012, PLN03012, Camelliol C synthase	Back alignment and domain information

>gnl\|CDD\|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>gnl\|CDD\|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases	Back alignment and domain information

>gnl\|CDD\|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		185
PLN03012		759	Camelliol C synthase	100.0
PLN02993		763	lupeol synthase	100.0
KOG0497		760	consensus Oxidosqualene-lanosterol cyclase and rel	100.0
TIGR03463		634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	100.0
cd02892		634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	100.0
TIGR01507		635	hopene_cyclase squalene-hopene cyclase. SHC is an	100.0
TIGR01787		621	squalene_cyclas squalene/oxidosqualene cyclases. T	100.0
COG1657		517	SqhC Squalene cyclase [Lipid metabolism]	99.43
COG1657		517	SqhC Squalene cyclase [Lipid metabolism]	94.34
cd02897		292	A2M_2 Proteins similar to alpha2-macroglobulin (al	92.75
KOG0497		760	consensus Oxidosqualene-lanosterol cyclase and rel	92.1
PF13243		109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	91.61
cd02892		634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	91.52
PLN03012		759	Camelliol C synthase	90.74
TIGR01507		635	hopene_cyclase squalene-hopene cyclase. SHC is an	90.18
PLN02993		763	lupeol synthase	89.25
TIGR03463		634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	88.93
TIGR01787		621	squalene_cyclas squalene/oxidosqualene cyclases. T	87.65
PF13243		109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	81.9

>PLN03012 Camelliol C synthase	Back alignment and domain information

Probab=100.00  E-value=6.4e-58  Score=426.63  Aligned_cols=185  Identities=71%  Similarity=1.379  Sum_probs=178.1

Q ss_pred             CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627            1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH   80 (185)
Q Consensus         1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~   80 (185)
                      +||+|+|+|+|+|||||||||+|+||||+|||||||+||+||+|||++||++|+++++.+||+|||++||++|||.++|+
T Consensus       227 ~lG~y~W~g~np~PpElwLLP~~~P~hp~~~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~  306 (759)
T PLN03012        227 ILGVFDWSGSNPMPPEFWILPSFFPIHPAKMWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARH  306 (759)
T ss_pred             HcCccccCCCCCCChhHHHccCcCCccHHHHHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhcc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCC-ChHHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhccCC
Q 039627           81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWP-LNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDP  159 (185)
Q Consensus        81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~-~~~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg~~~  159 (185)
                      +||++|+|+||+++++++|..||.++|+++..++ +++||++|+++|++||+.|+|+|.|.||+||++++|||+|++++|
T Consensus       307 ~~a~~D~y~p~~~~~~~~~~~l~~~~~~~l~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p  386 (759)
T PLN03012        307 LCAKEDAYCPHPLIQDLIWDCLYIFAEPFLACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDP  386 (759)
T ss_pred             ccccccccCCchHHHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999998874443 346999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHhhhhhceEecCCceeeC
Q 039627          160 NSDYFKKHLSRISEYLWVGEDGMKVQ  185 (185)
Q Consensus       160 d~p~~~~~~~~l~~~l~~~~dg~~~Q  185 (185)
                      |||.||+|++||+||+|+++|||+||
T Consensus       387 ~~~~~k~hl~ri~d~lw~~~dGm~~q  412 (759)
T PLN03012        387 NGDHFKKHLLRISDYLWIAEDGMKMQ  412 (759)
T ss_pred             CCHHHHHHHHHhhhcEEEeCCceEEc
Confidence            99999999999999999999999998

>PLN02993 lupeol synthase	Back alignment and domain information

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]	Back alignment and domain information

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase	Back alignment and domain information

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>TIGR01507 hopene_cyclase squalene-hopene cyclase	Back alignment and domain information

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases	Back alignment and domain information

>COG1657 SqhC Squalene cyclase [Lipid metabolism]	Back alignment and domain information

>COG1657 SqhC Squalene cyclase [Lipid metabolism]	Back alignment and domain information

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)	Back alignment and domain information

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]	Back alignment and domain information

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A	Back alignment and domain information

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>PLN03012 Camelliol C synthase	Back alignment and domain information

>TIGR01507 hopene_cyclase squalene-hopene cyclase	Back alignment and domain information

>PLN02993 lupeol synthase	Back alignment and domain information

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase	Back alignment and domain information

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases	Back alignment and domain information

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		185
1w6j_A		732	Structure Of Human Osc In Complex With Ro 48-8071 L		1e-33
1w6k_A		732	Structure Of Human Osc In Complex With Lanosterol L		1e-33

>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732

Back alignment and structure

Iteration: 1

Score = 139 bits (350), Expect = 1e-33, Method: Composition-based stats. Identities = 71/189 (37%), Positives = 109/189 (57%), Gaps = 12/189 (6%) Query: 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQ 60 +L VY W G N + PE W FP + P P L C+CR Y+PMSY Y R PL+ Sbjct: 199 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQS 258 Query: 61 LREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLN---Q 117 LR+E+Y + + I W R+ A ++++ PH+ W L VV +LN + + Sbjct: 259 LRQELYVEDFASIDWLAQRNNVAPDELYTPHS------W--LLRVVYALLNLYEHHHSAH 310 Query: 118 LREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCW-VEDPNSDYFKKHLSRISEYLW 176 LR+++++ HI +D ++ ++IG + K +NML W V+ P S F++H+SRI +YLW Sbjct: 311 LRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLW 370 Query: 177 VGEDGMKVQ 185 +G DGMK+Q Sbjct: 371 MGLDGMKMQ 379

PyMOL of 1w6j

>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		185
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	4e-54
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	1e-30

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732	Back alignment and structure

 Score =  181 bits (461), Expect = 4e-54
 Identities = 66/186 (35%), Positives = 106/186 (56%), Gaps = 6/186 (3%)

Query: 1   ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQ 60
           +L VY W G N + PE W FP + P  P  L C+CR  Y+PMSY Y  R      PL+  
Sbjct: 199 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQS 258

Query: 61  LREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLRE 120
           LR+E+Y + +  I W   R+  A ++++ PH+ +  +++  L      +        LR+
Sbjct: 259 LRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSAHLRQ 313

Query: 121 KSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCW-VEDPNSDYFKKHLSRISEYLWVGE 179
           ++++    HI  +D  ++ ++IG + K +NML  W V+ P S  F++H+SRI +YLW+G 
Sbjct: 314 RAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGL 373

Query: 180 DGMKVQ 185
           DGMK+Q
Sbjct: 374 DGMKMQ 379

PyMOL of 1w6k

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		185
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	100.0
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	100.0
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	90.18
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	86.93

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*	Back alignment and structure

Probab=100.00  E-value=4.1e-50  Score=376.24  Aligned_cols=180  Identities=37%  Similarity=0.803  Sum_probs=171.7

Q ss_pred             CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627            1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH   80 (185)
Q Consensus         1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~   80 (185)
                      +||+|+|+++|+|||||||||+||||||++||||||+||+||+||+++||+++.+|.+.+||+|||++||++|+|.++|+
T Consensus       199 ~~g~~~W~~~~~~PpE~~llP~~~p~~~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~  278 (732)
T 1w6k_A          199 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRN  278 (732)
T ss_dssp             HTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTT
T ss_pred             HcCCCCcccCCCCCHHHHHccCcCCCCHHHHHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhcc
Confidence            58999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhc-cCC
Q 039627           81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWV-EDP  159 (185)
Q Consensus        81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg-~~~  159 (185)
                      .++++|+|+|++++++.++..| +.+|+++    ++++|++|+++|++||.+|||+|||.||+|+++++||++|+. .++
T Consensus       279 ~~~~~d~~~p~~~~~~~~~~~l-~~~e~~~----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~  353 (732)
T 1w6k_A          279 NVAPDELYTPHSWLLRVVYALL-NLYEHHH----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGP  353 (732)
T ss_dssp             CCCGGGCSSCCCHHHHHHHHHH-HHHHHTC----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCT
T ss_pred             ccccccccCCHHHHHHHHHHHH-HHhhhcC----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCC
Confidence            9999999999999999888888 6788765    678999999999999999999999999999999999999995 459


Q ss_pred             CCHHHHHHHhhhhhceEecCCceeeC
Q 039627          160 NSDYFKKHLSRISEYLWVGEDGMKVQ  185 (185)
Q Consensus       160 d~p~~~~~~~~l~~~l~~~~dg~~~Q  185 (185)
                      |||.+++|++++++|+|+.+|||++|
T Consensus       354 ~~~~~~~~l~~l~~~l~~~~dG~~~q  379 (732)
T 1w6k_A          354 ASTAFQEHVSRIPDYLWMGLDGMKMQ  379 (732)
T ss_dssp             TSHHHHHHHHTSGGGEEEETTEEEEC
T ss_pred             CCHHHHHHHHHHHHhheeCCCCceeC
Confidence            99999999999999999999999987

PyMOL of 1w6k

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*	Back alignment and structure

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*	Back alignment and structure

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		185
d1w6ka2		279	a.102.4.2 (A:100-378) Lanosterol synthase {Human (	3e-78
d2sqca2		271	a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic	2e-33
d1w6ka1		448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	2e-11

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  232 bits (594), Expect = 3e-78
 Identities = 65/185 (35%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 1   ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQ 60
           +L VY W G N + PE W FP + P  P  L C+CR  Y+PMSY Y  R      PL+  
Sbjct: 100 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQS 159

Query: 61  LREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLRE 120
           LR+E+Y + +  I W   R+  A ++++ PH+ +  +++  L      +        LR+
Sbjct: 160 LRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSAHLRQ 214

Query: 121 KSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCW-VEDPNSDYFKKHLSRISEYLWVGE 179
           ++++    HI  +D  ++ ++IG + K +NML  W V+ P S  F++H+SRI +YLW+G 
Sbjct: 215 RAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGL 274

Query: 180 DGMKV 184
           DGMK+
Sbjct: 275 DGMKM 279

PyMOL of d1w6ka2

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271	Back information, alignment and structure

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		185
d1w6ka2		279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	100.0
d2sqca2		271	Squalene-hopene cyclase {Alicyclobacillus acidocal	100.0
d1w6ka2		279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	95.28
d2sqca1		352	Squalene-hopene cyclase {Alicyclobacillus acidocal	94.67
d1w6ka1		448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	94.08
d2sqca2		271	Squalene-hopene cyclase {Alicyclobacillus acidocal	92.65
d2sqca1		352	Squalene-hopene cyclase {Alicyclobacillus acidocal	91.98
d1w6ka1		448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	85.94

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-59  Score=391.92  Aligned_cols=179  Identities=37%  Similarity=0.813  Sum_probs=170.9

Q ss_pred             CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627            1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH   80 (185)
Q Consensus         1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~   80 (185)
                      +||+|+|+++|+||||+||||+|||||++|||||||+|||||+||+++||++|++|++.++|+|||.++|++|+|.+.|+
T Consensus       100 ~~g~~~W~~~~~~P~E~~lLP~w~P~~~~~~~~~~R~v~vPls~l~~~r~~~~~~p~~~~lr~el~~~p~~~i~~~~~r~  179 (279)
T d1w6ka2         100 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRN  179 (279)
T ss_dssp             HTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTT
T ss_pred             HcCccccccCCCCCHHHHhccccCccchHHhhhhhhhhhhhhHHHhhccccCCCCcHHHHHHHHhccCCccccccccccC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhh-ccCC
Q 039627           81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCW-VEDP  159 (185)
Q Consensus        81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~l-g~~~  159 (185)
                      .++++|+|+|++++++.++..+ +.+|++    ++++||++|+++|++||++|||+||+.|||||++++||+++| .++|
T Consensus       180 ~~~~~d~~~~~~~~~~~~d~~l-~~~e~~----~~~~lR~~Al~~a~~~i~~ede~t~~~glg~i~~~lnml~~~~~e~p  254 (279)
T d1w6ka2         180 NVAPDELYTPHSWLLRVVYALL-NLYEHH----HSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGP  254 (279)
T ss_dssp             CCCGGGCSSCCCHHHHHHHHHH-HHHHHT----CCHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCT
T ss_pred             ccCccccCCCcHHHHHHHHHHH-HHhhcc----CcHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHccCC
Confidence            9999999999999988888777 466654    478899999999999999999999999999999999999999 5789


Q ss_pred             CCHHHHHHHhhhhhceEecCCceee
Q 039627          160 NSDYFKKHLSRISEYLWVGEDGMKV  184 (185)
Q Consensus       160 d~p~~~~~~~~l~~~l~~~~dg~~~  184 (185)
                      ||+.||+|++++.||+|+++|||+|
T Consensus       255 ~s~~~k~hl~ri~dy~W~~edGm~m  279 (279)
T d1w6ka2         255 ASTAFQEHVSRIPDYLWMGLDGMKM  279 (279)
T ss_dssp             TSHHHHHHHHTSGGGEEEETTEEEE
T ss_pred             CcHHHHHHHHhcccceeECcccCCC
Confidence            9999999999999999999999987

PyMOL of d1w6ka2

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure