Citrus Sinensis ID: 039633

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30-
Protein Sequence
MPSANLPLYFQDDVSVIDHWLLNGMHFANKV
Secondary Structure (PSIPRED)
cccccccEEEEccEEEEEEEEEEcEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHEccccEEEEEEEEcccEEcccc
Coil and Loop (DISEMBL)
mpsanlplyfqddvSVIDHWLLNgmhfankv
Flexible Loop (DISEMBL)
mpsanlplyfqddVSVIDHWLLNGMHFANKV
Low Complexity Region (SEG)
MPSANLPLYFQDDVSVIDHWLLNGMHFANKV
Disordered region (IsUnstruct)
*****LPLYFQDDVSVIDHWLLNGMHF****
Disordered Region (DISOPRED)
**SANLPLYFQDDVSVIDHWLLNGMHF****
Disordered Region (DISEMBL)
MPSANLPLYFQDDVSVIDHWLLNGMHFANKV
Disordered Region (DISPRO)
***ANLPLYFQDDVSVIDHWLLNGMHF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhhii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSANLPLYFQDDVSVIDHWLLNGMHFANKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	31	2.2.26 [Sep-21-2011]
C3SBU4	358	Probable (S)-tetrahydropr	N/A	no	0.935	0.081	0.724	1e-06
C3SBU5	358	(S)-tetrahydroprotoberber	N/A	no	0.935	0.081	0.689	3e-06
Q108P1	358	(S)-tetrahydroprotoberber	N/A	no	0.935	0.081	0.689	3e-06
Q5C9L6	361	(S)-coclaurine N-methyltr	N/A	no	0.903	0.077	0.642	3e-05
C3SBS8	350	(S)-tetrahydroprotoberber	N/A	no	0.935	0.082	0.620	4e-05

>sp|C3SBU4|TNMT2_PAPBR Probable (S)-tetrahydroprotoberberine N-methyltransferase 2 OS=Papaver bracteatum PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/29 (72%), Positives = 25/29 (86%)

Query: 3   SANLPLYFQDDVSVIDHWLLNGMHFANKV 31
           SA+  LYFQDDVSV+DHW++NGMHFA  V
Sbjct: 265 SADSLLYFQDDVSVVDHWVVNGMHFARTV 293

Papaver bracteatum (taxid: 215227)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 2

>sp|C3SBU5|TNMT1_PAPBR (S)-tetrahydroprotoberberine N-methyltransferase 1 OS=Papaver bracteatum PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/29 (68%), Positives = 24/29 (82%)

Query: 3   SANLPLYFQDDVSVIDHWLLNGMHFANKV 31
           +AN  LYFQDDVSV+DHW++NGMH A  V
Sbjct: 265 AANSLLYFQDDVSVVDHWVVNGMHMARSV 293

N-methyltransferase with a strict substrate specificity for (R,S)-tetrahydropalmatine or (R,S)-stylopine.

Papaver bracteatum (taxid: 215227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q108P1|TNMT_PAPSO (S)-tetrahydroprotoberberine N-methyltransferase OS=Papaver somniferum PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/29 (68%), Positives = 24/29 (82%)

Query: 3   SANLPLYFQDDVSVIDHWLLNGMHFANKV 31
           +AN  LYFQDDVSV+DHW++NGMH A  V
Sbjct: 265 AANSLLYFQDDVSVVDHWVVNGMHMARSV 293

Involved in the biosynthesis of protopine and benzophenanthridine alkaloids. Catalyzes the conversion of the protoberberine alkaloids stylopine, canadine, and tetrahydropalmatine to their corresponding N-methylated derivatives. No activity with dimethoxytetrahydroisoquinoline, methylisoquinolinediol, norlaudanosoline, (R,S)-tetrahydroxyberbine, (S)-scoulerine or (R,S)-pavine as substrates.

Papaver somniferum (taxid: 3469)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q5C9L6|CNMT_THLFG (S)-coclaurine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/28 (64%), Positives = 24/28 (85%)

Query: 1   MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
           +PSA+  LYFQDDVSV++HW L+G HF+
Sbjct: 266 IPSASFFLYFQDDVSVVNHWTLSGKHFS 293

Involved in the biosynthesis of protoberberine alkaloids. N-methyltransferase with a substrate preference for (R,S)-norreticuline but also active with dimethoxytetrahydroisoquinoline.

Thalictrum flavum subsp. glaucum (taxid: 150095)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 0

>sp|C3SBS8|TNMT_ESCCA (S)-tetrahydroprotoberberine N-methyltransferase OS=Eschscholzia californica PE=1 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 3   SANLPLYFQDDVSVIDHWLLNGMHFANKV 31
           S++  LYFQDDVS +DHW++NGMH A  V
Sbjct: 258 SSSTLLYFQDDVSALDHWVVNGMHMARSV 286

N-methyltransferase with a broad substrate range, accepting protoberberine alkaloids (R,S)-stylopine and (R,S)-tetrahydropalmatine, and to a lesser extent (R,S)-canadine and (S)-scoulerine.

Eschscholzia californica (taxid: 3467)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	31
343887280	357	coclaurine N-methyltransferase [Citrus u	0.903	0.078	0.821	3e-06
224142824	355	predicted protein [Populus trichocarpa]	0.903	0.078	0.75	9e-06
194703734	357	unknown [Zea mays] gi|194704128|gb|ACF86	0.903	0.078	0.75	1e-05
297798634	355	coclaurine N-methyltransferase [Arabidop	0.903	0.078	0.714	2e-05
413934486	404	hypothetical protein ZEAMMB73_966948 [Ze	0.903	0.069	0.75	2e-05
225429586	355	PREDICTED: (S)-coclaurine N-methyltransf	0.903	0.078	0.75	2e-05
413954193	554	hypothetical protein ZEAMMB73_915026 [Ze	0.903	0.050	0.75	3e-05
8698899	101	putative protein [Pyrus pyrifolia]	0.935	0.287	0.724	4e-05
217072698	358	unknown [Medicago truncatula] gi|3885016	0.903	0.078	0.75	4e-05
357465787	393	Cyclopropane-fatty-acyl-phospholipid syn	0.903	0.071	0.75	4e-05

>gi|343887280|dbj|BAK61826.1| coclaurine N-methyltransferase [Citrus unshiu]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/28 (82%), Positives = 26/28 (92%)

Query: 1   MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
           MPSANL LYFQDDVSV+DHWL+NG H+A
Sbjct: 262 MPSANLLLYFQDDVSVVDHWLVNGKHYA 289

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142824|ref|XP_002324742.1| predicted protein [Populus trichocarpa] gi|222866176|gb|EEF03307.1| predicted protein [Populus trichocarpa]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (92%)

Query: 1   MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
           MPSANL LYFQDDVS++DHWL+NG H++
Sbjct: 262 MPSANLLLYFQDDVSIVDHWLVNGKHYS 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194703734|gb|ACF85951.1| unknown [Zea mays] gi|194704128|gb|ACF86148.1| unknown [Zea mays] gi|413954373|gb|AFW87022.1| hypothetical protein ZEAMMB73_105024 [Zea mays]

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (92%)

Query: 1   MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
           MPSANL LYFQ+DVSV+DHWL++G H+A
Sbjct: 264 MPSANLLLYFQEDVSVVDHWLVSGTHYA 291

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798634|ref|XP_002867201.1| coclaurine N-methyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297313037|gb|EFH43460.1| coclaurine N-methyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/28 (71%), Positives = 26/28 (92%)

Query: 1   MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
           MPSANL LYFQ++VS++DHWL+NG H+A
Sbjct: 262 MPSANLLLYFQENVSIVDHWLVNGKHYA 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413934486|gb|AFW69037.1| hypothetical protein ZEAMMB73_966948 [Zea mays]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (92%)

Query: 1   MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
           MPSANL LYFQ+DVSV+ HWL++GMH+A
Sbjct: 323 MPSANLLLYFQEDVSVVYHWLVSGMHYA 350

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429586|ref|XP_002280292.1| PREDICTED: (S)-coclaurine N-methyltransferase [Vitis vinifera] gi|296081677|emb|CBI20682.3| unnamed protein product [Vitis vinifera]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (92%)

Query: 1   MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
           MP+ANL LYFQ+DVSV+DHWL+NG H+A
Sbjct: 262 MPAANLLLYFQEDVSVVDHWLVNGKHYA 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413954193|gb|AFW86842.1| hypothetical protein ZEAMMB73_915026 [Zea mays]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (92%)

Query: 1   MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
           MPSANL LYFQ+DVSV+ HWL++GMH+A
Sbjct: 440 MPSANLLLYFQEDVSVVYHWLVSGMHYA 467

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8698899|gb|AAF78515.1|AF195214_1 putative protein [Pyrus pyrifolia]

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 26/29 (89%)

Query: 1  MPSANLPLYFQDDVSVIDHWLLNGMHFAN 29
          MPSANL LYFQDDVS+++HWL+NG H+A 
Sbjct: 1  MPSANLLLYFQDDVSIVNHWLVNGKHYAQ 29

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072698|gb|ACJ84709.1| unknown [Medicago truncatula] gi|388501626|gb|AFK38879.1| unknown [Medicago truncatula]

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (92%)

Query: 1   MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
           MP+ANL LYFQDDV+VI+HWL+NG H+A
Sbjct: 265 MPAANLLLYFQDDVTVINHWLVNGKHYA 292

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465787|ref|XP_003603178.1| Cyclopropane-fatty-acyl-phospholipid synthase [Medicago truncatula] gi|355492226|gb|AES73429.1| Cyclopropane-fatty-acyl-phospholipid synthase [Medicago truncatula]

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (92%)

Query: 1   MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
           MP+ANL LYFQDDV+VI+HWL+NG H+A
Sbjct: 262 MPAANLLLYFQDDVTVINHWLVNGKHYA 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	31
TAIR|locus:2125934	355	AT4G33120 [Arabidopsis thalian	0.903	0.078	0.678	2.9e-06
TAIR|locus:2125924	355	AT4G33110 [Arabidopsis thalian	0.903	0.078	0.642	6.1e-06

TAIR|locus:2125934 AT4G33120 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 19/28 (67%), Positives = 26/28 (92%)

Query:     1 MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
             MPSA+L LYFQ++VS++DHWL+NG H+A
Sbjct:   262 MPSADLLLYFQENVSIMDHWLVNGTHYA 289

GO:0005737 "cytoplasm" evidence=ISM

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0030794 "(S)-coclaurine-N-methyltransferase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2125924 AT4G33110 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 18/28 (64%), Positives = 26/28 (92%)

Query:     1 MPSANLPLYFQDDVSVIDHWLLNGMHFA 28
             MPSA+L LYFQ++VS++DHWL++G H+A
Sbjct:   262 MPSADLLLYFQENVSIVDHWLVSGTHYA 289


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       31        31   0.00091  102 3  11 22  0.45    24
                                                     29  0.44    22


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  419 (45 KB)
  Total size of DFA:  69 KB (2061 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  4.20u 0.19s 4.39t   Elapsed:  00:00:00
  Total cpu time:  4.20u 0.19s 4.39t   Elapsed:  00:00:00
  Start:  Sat May 11 09:25:58 2013   End:  Sat May 11 09:25:58 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0030794 "(S)-coclaurine-N-methyltransferase activity" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	31
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	94.13
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	93.9

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=94.13  E-value=0.0069  Score=38.39  Aligned_cols=31  Identities=19%  Similarity=0.083  Sum_probs=27.0

Q ss_pred             CCCCChhhh-hcCceeeEEEeeEcCeeccccC
Q 039633            1 MPSANLPLY-FQDDVSVIDHWLLNGMHFANKV   31 (31)
Q Consensus         1 MPS~dlll~-Fq~~l~v~~~W~~nG~HY~rTa   31 (31)
                      +||.+.+.. +++..-.+..|...|.||+||+
T Consensus       201 lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl  232 (283)
T COG2230         201 LPSISEILELASEAGFVVLDVESLRPHYARTL  232 (283)
T ss_pred             CCCHHHHHHHHHhcCcEEehHhhhcHHHHHHH
Confidence            588777777 8888888999999999999984

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=93.90  E-value=0.006  Score=37.39  Aligned_cols=30  Identities=23%  Similarity=0.231  Sum_probs=19.4

Q ss_pred             CCCCChhhh-hc-CceeeEEEeeEcCeeccccC
Q 039633            1 MPSANLPLY-FQ-DDVSVIDHWLLNGMHFANKV   31 (31)
Q Consensus         1 MPS~dlll~-Fq-~~l~v~~~W~~nG~HY~rTa   31 (31)
                      |||.+.+.. ++ ..|.|+ +|.-.|.||+||+
T Consensus       195 lps~~~~~~~~~~~~l~v~-~~~~~~~hY~~Tl  226 (273)
T PF02353_consen  195 LPSLSEILRAAEDAGLEVE-DVENLGRHYARTL  226 (273)
T ss_dssp             --BHHHHHHHHHHTT-EEE-EEEE-HHHHHHHH
T ss_pred             CCCHHHHHHHHhcCCEEEE-EEEEcCcCHHHHH
Confidence            577776666 44 457765 7788899999994

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	31
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	95.89
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	95.04
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	94.79

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.89  E-value=0.00027  Score=40.87  Aligned_cols=31  Identities=10%  Similarity=0.361  Sum_probs=23.9

Q ss_pred             CCCCChhhhhcCceee-EEEeeEcCeeccccC
Q 039633            1 MPSANLPLYFQDDVSV-IDHWLLNGMHFANKV   31 (31)
Q Consensus         1 MPS~dlll~Fq~~l~v-~~~W~~nG~HY~rTa   31 (31)
                      |||.+.+..+.++..+ +.+|...|.||+||+
T Consensus       209 lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL  240 (291)
T d1kpia_         209 LPRISQVDYYSSNAGWKVERYHRIGANYVPTL  240 (291)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEEEECGGGHHHHH
T ss_pred             CCCHHHHHhhhcccccccceeeeccccHHHHH
Confidence            6888888888876432 366677799999994

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.04  E-value=0.0002  Score=40.88  Aligned_cols=31  Identities=13%  Similarity=0.213  Sum_probs=21.0

Q ss_pred             CCCCChhhhhcCceeeEEEeeEc-CeeccccC
Q 039633            1 MPSANLPLYFQDDVSVIDHWLLN-GMHFANKV   31 (31)
Q Consensus         1 MPS~dlll~Fq~~l~v~~~W~~n-G~HY~rTa   31 (31)
                      |||.+.+..+.+...++-.+..| |.||+||+
T Consensus       193 lPS~~~l~~~~e~aGf~v~~~~~~~~hYa~TL  224 (280)
T d2fk8a1         193 LPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTL  224 (280)
T ss_dssp             CCCHHHHHHHHHHTTCBCCCCEECHHHHHHHH
T ss_pred             ccchHhhhhhHHhhccccceeeecccCHHHHH
Confidence            68888787776554444344444 89999994

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.79  E-value=0.0019  Score=37.07  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=22.0

Q ss_pred             CCCCChhhhh--cCceeeEEEeeEcCeeccccC
Q 039633            1 MPSANLPLYF--QDDVSVIDHWLLNGMHFANKV   31 (31)
Q Consensus         1 MPS~dlll~F--q~~l~v~~~W~~nG~HY~rTa   31 (31)
                      |||.+.+..+  +..|.|++.+-+ |.||+||.
T Consensus       203 lPsl~~~~~~~e~agf~v~~~~~~-~~hYarTl  234 (285)
T d1kpga_         203 LPSIPMVQECASANGFTVTRVQSL-QPHYAKTL  234 (285)
T ss_dssp             CCCHHHHHHHHHTTTCEEEEEEEC-HHHHHHHH
T ss_pred             CCChhhHHHHHHHhchhhcccccc-hhhHHHHH
Confidence            6777776655  455888776665 89999994