Citrus Sinensis ID: 039635

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
Protein Sequence
MEQSEKLHMHVHQHPFSCGSRPERCFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIEVPLNDTLVHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCDFVLDFDCATLQSRVLNHTAKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCEECDYIADFMCVIEVTKPTDYFLEKSY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEcccccccccccEEEccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEcccccccccHHHHcccccccccccccEEEEEEccccccccccccccccccccEEEccccccEEcccccccccccEEEcccccccccEEcccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEccccccEEcccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEcccccccccccccccccEEEEEccccccEEEEHHHcccccEEEccccccccEEEEcccccccccccccEEEcccccccccEEEEEccEEEEEEHHHccccccccccccccccccccccccEcccccccccccccccccccEEEEccccEEEEHHHccccccEEccccccccEEEEcccccccEEccccccccccEEEEEcccEEEEEHHHcccccccccccccccEEEccccccccEEcccccccccccEEEEEEcccEEEEHHHcccccccEEEcccccccEEEEcccccccccccccEEEcEEEccccccccEEEEcccEEEEEEEEEEcccccccEEEccccccccEEEccccccccccccccccccccccccEEEEEEEEEEEEHHHcccccccccccccccEEEEcccccccEEEEccccccccEEEEEccccEEEEEEEccccccccccccccccEEEEcccccEEEEEEEEEEEEccccccccEEEccccccccEEEEccccccccccEEEEHEccccccccEEEEcccccEEEEEEEEEEEcccccEEEcccc
Coil and Loop (DISEMBL)
meqseklhmhvhqhpfscgsrperCFACLgeisgnfyicghcdsdsplfhqscaelpqllqtnfhphcrfrfkeesdvfsfkrtlefgcdfcdqshkgykyccdlCNFQIGFACAATLIEHYRVQEHIIEhfshrhplirlevDEEWCRIcrnnilgpsygclpckfyihnscselpqqvlhpfhahhslkLQNTFRGLLYCDACDSMimsakhyrcdecdfdlhldcisvkpkiryQGQEHLLVLMKsgsgtttcqacsfdtkpgaffVRCVecdfkfhvqcgpaspppivehihhghsltltlptdsfvkdkfdlfycdackeeidpqnpfccciecgyyihwRCTVievplndtlvhfdhnhfllplengtnddvpcyacgkvliqdqnhptygcdpcriylhktCAQMPRQIQhvlhrhpltvttndgergrtcDACQKylhghiykcdscdfvldfdcATLQSRVLNHTAKCRKYKFAISEASFQDCLkcnftlhlmlsplpltiehmshhqhsltlmdkhadgnygtqicdvCEEERDQQERVYYCEECDYIADFMCVIEvtkptdyfleksy
Flexible Loop (DISEMBL)
meqseklhmhvhqhpfscgsrPERCFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIEVPLNDTLVHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPltvttndgergrTCDACQKYLHGHIYKCDSCDFVLDFDCATLQSRVLNHTAKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCEECDYIADFMCVIEVTKptdyfleksy
Low Complexity Region (SEG)
MEQSEKLHMHVHQHPFSCGSRPERCFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIEVPLNDTLVHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCDFVLDFDCATLQSRVLNHTAKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCEECDYIADFMCVIEVTKPTDYFLEKSY
Disordered region (IsUnstruct)
***************FSCGSRPERCFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIEVPLNDTLVHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCDFVLDFDCATLQSRVLNHTAKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCEECDYIADFMCVIEVTKPTDYFL****
Disordered Region (DISOPRED)
*********HVHQHPFSCGSRPERCFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIEVPLNDTLVHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCDFVLDFDCATLQSRVLNHTAKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCEECDYIADFMCVIEVTKPTD**L****
Disordered Region (DISEMBL)
*******************SRPERCFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIEVPLNDTLVHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCDFVLDFDCATLQSRVLNHTAKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCEECDYIADFMCVIEVTKPTDYFLEKSY
Disordered Region (DISPRO)
*****KLHMHVHQHPFSCGSRPERCFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIEVPLNDTLVHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCDFVLDFDCATLQSRVLNHTAKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCEECDYIADFMCVIEVTKPTDYFLEKSY
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQSEKLHMHVHQHPFSCGSRPERCFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIEVPLNDTLVHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCDFVLDFDCATLQSRVLNHTAKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCEECDYIADFMCVIEVTKPTDYFLEKSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
224144591	838	predicted protein [Populus trichocarpa]	0.886	0.612	0.285	2e-41
356572112	567	PREDICTED: uncharacterized protein LOC10	0.740	0.756	0.278	5e-36
449460291	1296	PREDICTED: uncharacterized protein LOC10	0.835	0.373	0.285	4e-35
224139892	675	predicted protein [Populus trichocarpa]	0.884	0.758	0.271	5e-35
224137826	701	predicted protein [Populus trichocarpa]	0.889	0.734	0.252	4e-33
224139812	697	predicted protein [Populus trichocarpa]	0.879	0.730	0.248	2e-31
15240290	652	cysteine/histidine-rich C1 domain-contai	0.913	0.811	0.249	1e-30
4678348	669	putative protein [Arabidopsis thaliana]	0.908	0.786	0.253	3e-30
22331691	619	cysteine/histidine-rich C1 domain-contai	0.882	0.825	0.258	1e-29
449460297	675	PREDICTED: uncharacterized protein LOC10	0.877	0.752	0.249	3e-29

>gi|224144591|ref|XP_002325342.1| predicted protein [Populus trichocarpa] gi|222862217|gb|EEE99723.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 183/640 (28%), Positives = 264/640 (41%), Gaps = 127/640 (19%)

Query: 25  CFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQT----NFHPHCRFRFKEESDVFS 80
           C+ C   I G  Y C  C       H+SC ELP  L      + HP            F 
Sbjct: 41  CYGCFETIHGPAYFCEICGDF--WLHKSCFELPSELPKHSLHSIHPLTLIVRPPSLAGF- 97

Query: 81  FKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAAT-----LIEHYRVQEHIIEHFSHR 135
                 F CD C     G+ + C  C F +   CA +     L     V+   I +F   
Sbjct: 98  ------FVCDGCRDMSPGFAFHCKACRFNLDVKCAISTDGEDLRSRKGVKNTEIPYFGDE 151

Query: 136 HPLIRLEVDEE---WCRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKL 192
           H L+     +E    C  C+  + GP+YGCL C+FY+H SC ++P ++ HP+H  H L+ 
Sbjct: 152 HLLVSFNAKQEVEKTCTGCQLLLSGPAYGCLDCEFYLHESCKDMPSEIQHPYHPPHPLRA 211

Query: 193 QNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDC----ISVKPKIRYQGQEHLLVLMK 248
           Q    G   CDAC  M +    YRC ECDF+LH+ C    + V   ++++G EH L    
Sbjct: 212 QVAEYG-SECDAC-HMPIRKVFYRCSECDFNLHILCANKSLQVASSLKHKGHEHNLYYFV 269

Query: 249 SG--SGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEH----IHHGHSLT 302
           +   +  + C  C    K G++++ C+EC +  H+ C P   P +VE+     +H H LT
Sbjct: 270 ASYFNEYSVCNTCRKVCK-GSYYL-CLECKYYVHLDCIPL--PRVVENDCHSRYHSHYLT 325

Query: 303 LTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIEC----GYYIHWRC---TVIEVPLN 355
           L    D FV+D    +YC+ C+++ DP  P   C +C     Y  H  C    ++E  LN
Sbjct: 326 L---KDCFVEDDSGQYYCEFCEKKRDPTYPVYYCDQCPDRHPYLAHIECLMSELMEAELN 382

Query: 356 DT------------------------------------LVHFDHNHFLLPLENGTNDDVP 379
                                                 L  F H H L+P +N  +D   
Sbjct: 383 SARTSAKMVDDGDVKGDTKCLALVKYTTIPPENQIKMQLKGFRHEHILVP-DNEESDARR 441

Query: 380 CYAC---GKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLH-RHPLTVTTNDGERG 435
            Y     GK+       P Y C  C    H +CA+ P +  H LH +H LT+      + 
Sbjct: 442 TYCSWCDGKIF-----GPGYICQECSGNWHISCAKSPPKKTHFLHSQHTLTMLYPHYFKY 496

Query: 436 RTCDACQKYLHGHI-YKCDSCDFVLDFDCATL---QSRVLNHT----------------- 474
             CD C+++ H    Y C  C F LD  CA+L   Q   L  T                 
Sbjct: 497 FICDGCREFCHDVAGYHCYECRFFLDMKCASLPDDQCEQLKKTESKTIYFCHKHKLTRAN 556

Query: 475 ------AKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHAD 528
                  KC+  +  IS A++  C+ CNF LH      P  I+H  H QH   L+ +  D
Sbjct: 557 CAKGIKEKCKVCQVRISGATYC-CINCNFFLHESCLETPQEIQHQYHLQHP--LLGRDFD 613

Query: 529 GNYGTQICDVCEEERDQQERVYYCEECDYIADFMCVIEVT 568
           GN   + C  C  +    +  YYC+ C++   F C   +T
Sbjct: 614 GN--PKNCRACNLQI--WDIAYYCDICEFALHFTCATYLT 649

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572112|ref|XP_003554214.1| PREDICTED: uncharacterized protein LOC100810028 [Glycine max]

 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 137/492 (27%), Positives = 213/492 (43%), Gaps = 63/492 (12%)

Query: 129 IEHFSHRHPLIRLEVDEEW-----CRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHP 183
           +EHFSH HPL+  + D  +     C  C   I GP + C+ C + +H  C+++ + V HP
Sbjct: 4   MEHFSHIHPLLLKQEDSNYNNQVLCSGCEKLISGPVFCCVQCNYVLHKKCAQIARHVKHP 63

Query: 184 FHAHHSLKLQNT--FRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCIS-VKPKIRYQGQ 240
           FH  H L L +T  + G   CD+C  + ++   Y C  C++DL + C S   P     G 
Sbjct: 64  FHPQHPLVLLSTTPYEGPYICDSCRGLFINFV-YHCYHCNYDLDVSCGSQFNPD---DGH 119

Query: 241 EHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHS 300
           +H   L  +   +  C AC      G     C  C    H  C  A  P  +    H H 
Sbjct: 120 KHEF-LSVTNPQSFVCYACGMHANEG-LACLCTICQIWVHSSC--AELPLAIRIKGHDHP 175

Query: 301 LTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRC------------- 347
           L LT      V   +    C  C E + P      C  C + +H +C             
Sbjct: 176 LKLTYTLH--VYGFWGNLTCGVCNEAMSPAFAGYFCSTCKFAVHLKCPQQYLRGEYEDEE 233

Query: 348 ------TVIEVPLNDTLVHFDHNHFLLPLENGTNDDVP-----CYACGKVLIQDQNHPTY 396
                 T     ++ T   F H H L   E  ++DDV      C AC + ++     P +
Sbjct: 234 SFTGYETEESQDIDFTFSFFGHEHLLKFTEEESDDDVKYFDKLCDACVRPIMP----PFF 289

Query: 397 GCDP--CRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERG-RTCDACQKYLHGHIYKCD 453
            C+   C  +LH++CA++PR  QH  H HPLT+ +     G   CD C++  +G +Y+CD
Sbjct: 290 SCEEENCGFFLHQSCAELPRTKQHPFHTHPLTLQSKAPYDGIYKCDGCRRLSNGFVYRCD 349

Query: 454 SCDFVLDFDCATLQSRV----------LNHTAKCRKYKFA-ISEASFQDCLKC-NFTLHL 501
            C F LD  C TL+ R+          L  T+  R+ K   +       C  C +F++  
Sbjct: 350 VCQFDLDVCCGTLEERIEHESHVHPLFLKKTSVSRQCKGCHLWSKLVYVCDVCEDFSVDC 409

Query: 502 MLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCEECDYIADF 561
             + LP    HM + +H L+L +   +G+     C +C E+   ++  YYC++CD  A  
Sbjct: 410 GCATLPSKTWHM-YDKHPLSL-NYFVEGSLREHECGICNEKMSPKQWFYYCDDCDSGAHP 467

Query: 562 MCVIEVTKPTDY 573
            CV+  ++   +
Sbjct: 468 SCVVGKSRRVKF 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460291|ref|XP_004147879.1| PREDICTED: uncharacterized protein LOC101206551 [Cucumis sativus]

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 162/567 (28%), Positives = 228/567 (40%), Gaps = 83/567 (14%)

Query: 49  FHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNF 108
            HQSC  LP  + + FHP              F  T  + C  C Q   G  Y C  CNF
Sbjct: 53  IHQSCLHLPPQIHSPFHPLHPL----------FLETNNYFCTVCWQMPSGDVYRCRKCNF 102

Query: 109 QIGFACAATLIEH---YRVQEHIIEHFSHRHPLIRLEVDEEW------CRICRNNILG-P 158
           QI   C  T  +     R+      HFSH HPL  L+++E        C +C   I   P
Sbjct: 103 QIDIKCVLTDTKSSGLRRISGDQFRHFSHPHPLT-LQLEENRGKNRVVCFVCDLLIKSTP 161

Query: 159 SYGCLPCKFYIHNSCSELPQQVLH-PFHAHHSLKLQNTFRGLLYCDACDS----MIMSAK 213
           SY C  C  + H  C+ELP+++    FH H    L N       CD+C++     + S  
Sbjct: 162 SYFCSQCDNHFHQGCAELPRELYDVRFHQHPLFLLPNLSFANFLCDSCNNNCRKFVYSCP 221

Query: 214 HYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCV 273
           H R   C F+LH+ C+      +    EH     ++   +  C+ C    K   F   C 
Sbjct: 222 HPR--HCKFNLHVACL------QSFNHEHNFTAFRNAMDSFDCRVCG--KKGNGFPWFCE 271

Query: 274 ECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPF 333
            C    H +C   SP  +    HH H LTLT   D+         YC  C E+++ +   
Sbjct: 272 ICHILAHRKCA-KSPLTLRTVGHHLHDLTLTYFRDNVPNHTR---YCKICGEKLEMKFAG 327

Query: 334 CCCIECGYYIHWRCTVIE------VPLND-TLVHFD-------------HNHFL-LPLEN 372
             C EC Y+ H  C   +       P+ D T  H+              H+H L L +  
Sbjct: 328 YGCYECNYFTHLDCAETQRFDLQSTPIVDLTTNHYSSNNEHDNEIQCSVHSHNLNLTMGI 387

Query: 373 GTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDG 432
               D  C  C K L+      +YGC  C  Y+HK CA++P+   H LH+H LT+ +   
Sbjct: 388 RRKGDRICDGCLKGLLSS----SYGCQQCDFYVHKECAKLPKTKTHFLHQHLLTLISIPN 443

Query: 433 ERGRTCDACQKYLHGHIYKCDSCDFVLDFDCATLQSRV-------------LNHTAKCRK 479
                C+AC +Y HG  Y C +C    D  C +++                 N    C  
Sbjct: 444 FIFH-CEACHEYFHGFAYHCKTCLSTFDIRCTSIKIPFKHPGHQHPLSLDRTNEEHNCEA 502

Query: 480 YKFAISEASFQDCLKCNFTLHLMLSPLPLTIEH-MSHHQHSLTLMDKHADGNYGTQICDV 538
               +       C+ CNF L    + LPLT+ +    H  +LT +++     Y    CDV
Sbjct: 503 CGEGVRNRVSFRCVDCNFYLDAKCATLPLTVRYRFDAHPLNLTFVEEEESDEY---YCDV 559

Query: 539 CEEERDQQERVYYCEECDYIADFMCVI 565
           CEEER+     Y C  C + A   CV+
Sbjct: 560 CEEEREPWLWSYSCRICCFEAHLGCVL 586

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139892|ref|XP_002323327.1| predicted protein [Populus trichocarpa] gi|222867957|gb|EEF05088.1| predicted protein [Populus trichocarpa]

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 166/612 (27%), Positives = 232/612 (37%), Gaps = 100/612 (16%)

Query: 31  EISGNFYICGHCDSD--SP---------LFHQSCAELPQLLQTNFHPHCRFRFKEESDVF 79
           E SG   IC  CD     P           H++CAELP+ ++ + H      FK    + 
Sbjct: 21  EYSGELVICSGCDEPIWGPCYSCTSCYFFLHKTCAELPREIKRHIH------FKHPLHLL 74

Query: 80  SFKRT---LEFGCDFCDQSHKGYKYCCDLCNFQIGFACA-ATLIEHYRVQEHIIEHFSHR 135
           +   +   L   CD C ++ + + Y C +C F +   CA          Q H   H  H 
Sbjct: 75  AKPPSHYILGCICDLCKKTCESFVYHCSVCKFDLHIKCAFQQCFFEVDSQAHQFAHIDHS 134

Query: 136 HPLIRLE-----VDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQQV---LHPFHAH 187
             LI  E     V+   C  C   I GPSY C  C F++H  C+ELPQ++   LHP H  
Sbjct: 135 --LISNEEQEFHVEGVMCSGCDEPISGPSYRCTSCNFFLHKKCTELPQEIKRCLHPQHPL 192

Query: 188 HSL-KLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVL 246
           H L K      G   CD C+    S   YRC  C+F L + C         +GQEH  + 
Sbjct: 193 HLLGKPPAHHTGKWMCDLCNKTCKSFV-YRCSFCNFYLDIKCALPPCLSEVEGQEHQFIC 251

Query: 247 MKSGSG----TTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLT 302
           +         + TC AC  D     F   C  C    H  C   S P  ++   H H   
Sbjct: 252 LPKSLPLKIVSFTCNACGTDGDDSPFV--CTMCQLIVHKTC--ISFPRSIKLCIHQHPRI 307

Query: 303 LTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTV------------- 349
           +   T    +      YC  C++ +D       C +C +  H  C +             
Sbjct: 308 IH--TYHLQQCNSRNKYCGICRDGVDTNYGVYYCQDCDFVAHVNCGIQYRLSNTESDGDG 365

Query: 350 IEVPLNDT----------------------LVHFDHNHFLLPLENGTNDDVPCYACGKVL 387
             + +ND                       + HF H H L+ L +  N+D  C  C   +
Sbjct: 366 RSITMNDEFKESSFDIVREIKHGDERIIAEIKHFSHQHNLI-LIDEFNNDPKCDGCMLPI 424

Query: 388 IQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERGR-TCDACQKYLH 446
                 P Y C  C  +L K C  +PR+      RHPL +  N  E     C  C++Y H
Sbjct: 425 FT----PFYSCTECNFFLDKACIGLPRKKYWQYDRHPLILILNTWEEDPFQCAICEQYCH 480

Query: 447 GHIYKCDSCDFVLDFDCATLQSRVLNHTAKCRKYKFAI-------------SEASFQDCL 493
           G  Y CD C   LD  C       + H         A+              E+    C+
Sbjct: 481 GFSYNCDRCHRFLDVRCFKSTKDSIEHGGHEHPLYLAVESENRHCSGCGVSGESQTFRCV 540

Query: 494 KCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCE 553
            C+F L    + LP    H  + +H L L   + D N    +C +CE+ERD +   Y CE
Sbjct: 541 VCDFNLDFKCATLPDKARH-RYDEHPLFLT--YIDPNDYQYVCQICEKERDPKLWFYRCE 597

Query: 554 ECDYIADFMCVI 565
           ECD+ A   CV+
Sbjct: 598 ECDFDAHRECVL 609

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137826|ref|XP_002322661.1| predicted protein [Populus trichocarpa] gi|222867291|gb|EEF04422.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 159/629 (25%), Positives = 248/629 (39%), Gaps = 114/629 (18%)

Query: 25  CFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRT 84
           C  C G I G  Y C  C       H+ CA+LP+ ++   HP        +    ++ R 
Sbjct: 29  CSGCEGPIWGPCYSCTCCYF---FLHKKCADLPREIKRRIHPRHPLHLLAKPPS-NYTRC 84

Query: 85  LEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLIEHYRVQEHIIEHFSHR-HPLIRLEV 143
           +   CD CD++   + Y C LC F +   CA      +   +     F+H+ HPLI L  
Sbjct: 85  V---CDRCDKTCNSFVYHCSLCKFDLDIKCA--FQPGFLEVDSPAHQFAHKDHPLI-LNE 138

Query: 144 DEEW------CRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFR 197
           ++E+      C +C+  + GP Y C  C F++H  C+ELP ++    H  H L+L     
Sbjct: 139 EQEYHGEGVVCSVCKEPMSGPIYSCTSCNFFLHKKCAELPPKMKRHIHPEHPLRLLPNHD 198

Query: 198 GLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRY--QGQEH----LLVLMKSGS 251
             + CD C+     +  Y C  C+++LH+ C +  P I    Q Q H    LL  +   S
Sbjct: 199 --MICDFCNETCYESFVYFCIVCEYNLHIKC-AFPPCIYAADQNQRHQFRSLLNPLSFKS 255

Query: 252 GTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFV 311
            + TC AC  D     F+  C  C    H +C  + P  +   +HH   +  T      +
Sbjct: 256 ISFTCNACGTDGDDSPFW--CTMCQLVVHKKCI-SLPRTLKTALHHHPRIIHTYHPQQRI 312

Query: 312 KDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTV---------------------- 349
           +      YC  C  E+D +     C +C +  H  C++                      
Sbjct: 313 ESINK--YCGICCREVDTEYGVYYCPDCDFVAHVNCSIEYGDSATKIVEENEEEQSVTVY 370

Query: 350 ----------------IEVPLNDTLVHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNH 393
                            E  + + + HF H H L+ L +  +DD+ C  C   +    + 
Sbjct: 371 DQFMEPSLCVVREIKHGEERIIEEIKHFSHQHNLI-LIDKVDDDLKCDGCMLPI----ST 425

Query: 394 PTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERGR-TCDACQKYLHGHIYKC 452
           P Y C  C  +L KTC ++PR+ +   H + L ++ N  E     CD C++Y  G  Y C
Sbjct: 426 PFYRCASCNFFLDKTCIELPRRKKWQYHENQLILSWNLWEHDLCYCDVCKQYYRGLRYTC 485

Query: 453 DSCDFVLDFDC----------------------------ATLQSRVLNHTAKCRKYKFA- 483
           D C F +D  C                              +  R L  +          
Sbjct: 486 DVCGFCIDVRCFKSLEDSFKHGGHEHPLYLPAGRKNILRCNIGGRWLPPSVASDGENIPH 545

Query: 484 -----ISEAS--FQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQIC 536
                +SE S  F  C+ C+F L +  + LP    H  +  H L L   + + N     C
Sbjct: 546 CSGCCVSEESKVFFKCVVCDFKLGMKCATLPYKARH-EYDDHPLFLT--YINENDYQPSC 602

Query: 537 DVCEEERDQQERVYYCEECDYIADFMCVI 565
            +CE++RD +   Y CEECD+ A   C +
Sbjct: 603 IICEKDRDPKLWFYRCEECDFDAHPECAL 631

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139812|ref|XP_002323288.1| predicted protein [Populus trichocarpa] gi|222867918|gb|EEF05049.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 157/631 (24%), Positives = 240/631 (38%), Gaps = 122/631 (19%)

Query: 25  CFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRT 84
           C  C G I G  Y C  C       H+ CAELP+ ++   H         +S        
Sbjct: 29  CSGCEGPIWGPCYSCTSCYF---FLHKKCAELPREIKRRIHRRHPLHLLAKSPYKG---- 81

Query: 85  LEFGCDFCDQSHKGYKYCCDLCNFQIGFACA--ATLIEHYRVQEHIIEHFSHR-HPLIRL 141
            ++ CD C ++   + Y C  C F +   CA      E       +   F+H+ HPLI L
Sbjct: 82  -KYSCDRCYKTFNSFVYHCSFCKFDLDIKCAFQPGFFE-------VDSQFAHKDHPLI-L 132

Query: 142 EVDEEW------CRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNT 195
             ++E+      C +C+  + GPSY C  C F++H  C+ELP ++    H  H L+L   
Sbjct: 133 NEEQEYHGAGVVCSLCKEPMSGPSYSCTSCNFFLHKKCAELPPEIKRHLHPEHPLRLLPN 192

Query: 196 FRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEH------LLVLMKS 249
               + CD C+     +  Y C  C+F+LH+ C +  P +    Q+       LL  +  
Sbjct: 193 HD--MICDFCNETCYESFVYCCFVCEFNLHIKC-AFPPCVYAADQDQGHQFRSLLNPLSL 249

Query: 250 GSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDS 309
            S + TC AC  +     F   C  C    H +C  + P  +   +HH   +  T     
Sbjct: 250 KSISFTCNACGTERDDSPFM--CTTCQLLVHEECI-SLPRTLKTALHHHPRIIHTYQHQQ 306

Query: 310 FVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTV----------------IEVP 353
            ++      YC  C+ E+D +     C +C +  H  C+V                  V 
Sbjct: 307 CIESINK--YCGICRLEVDSKYGVYYCPDCDFVAHVNCSVEYGDFETEIVEENEEEQSVT 364

Query: 354 LNDTLV----------------------HFDHNHFLLPLENGTNDDVPCYACGKVLIQDQ 391
           ++D  +                      HF H H L+ L +  +DD+ C  C    +   
Sbjct: 365 VDDQFMEPSFRVVREIKHGEERIIEEIEHFSHQHNLI-LIDKVDDDLKCEGC----MLPI 419

Query: 392 NHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERG-RTCDACQKYLHGHIY 450
           + P Y C  C  +L KTC ++PR+ +   H + L ++ N G      C  C +   G  Y
Sbjct: 420 STPFYRCASCNFFLDKTCIELPRKKKWQYHENQLILSWNRGSHDLYYCHVCNQVSRGLSY 479

Query: 451 KCDSCDFVLDFDCATLQSRVLNHTA---------------KCRKYKFAI----------- 484
            CD C   +D  C         H                 +C      I           
Sbjct: 480 FCDICRLSIDVRCFKSLKDSFKHGGHEHPLYLPADRKNILRCNIGGRGIPPWVADDGEII 539

Query: 485 --------SEAS--FQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQ 534
                   SE S  F  C+ C+F L +  + LP    H  +  H L L   + + N    
Sbjct: 540 PHCSGCCVSEESKVFFKCVLCDFKLGMKCATLPYKARH-EYDDHPLFLT--YINANDYQP 596

Query: 535 ICDVCEEERDQQERVYYCEECDYIADFMCVI 565
            C +CEE+RD +   Y CEECD+ A   C +
Sbjct: 597 SCIICEEDRDPKLWFYRCEECDFDAHPECAL 627

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240290|ref|NP_198578.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana] gi|9757972|dbj|BAB08308.1| CHP-rich zinc finger protein-like [Arabidopsis thaliana] gi|332006828|gb|AED94211.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana]

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 155/621 (24%), Positives = 255/621 (41%), Gaps = 92/621 (14%)

Query: 5   EKLHMHVHQHPFSCGSRPERCFACLGEISGNFYICG-HCDS---DSPLFHQSCAELPQLL 60
           EK+ + +H+HP    +R      C G  S  +   G HC+    ++P FH+ CAE  Q +
Sbjct: 2   EKIELPIHKHPLLPITRFFSRHGCNGCGSDGYIYGGYHCNELGCETPAFHRECAESLQEI 61

Query: 61  QTNFHPH--CRFRFKEESDVFSFKRTLEFGCDFCD--QSHKGYKYCCDLCNFQIGFACAA 116
           +   HP      R  +++            C+ C      K Y Y C +C+F++   CA 
Sbjct: 62  KHFSHPDHPLNLRLNDKAST----------CNRCGIHLLRKTYIYVCSICDFKLDLHCAK 111

Query: 117 T-----LIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGPS--YGCLPCKFYI 169
                 ++E+Y + EH ++ F     L R+ + E  C+ C +  L     Y C  CK   
Sbjct: 112 DAAPLPILENYNLHEHPLKLFDVSKSLKRVRLRE--CKTCDSPFLIEKLCYICYQCKILF 169

Query: 170 HNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDA----CDSMI-MSAKHYRCDECDFDL 224
           H SC+E   +  H  H  H LKL        Y D     CD         + CD C+F +
Sbjct: 170 HASCAEFFPEANHTSHPQHPLKLLKFAEAPDYADKKCLLCDEKFDQDQGLHHCDVCNFSI 229

Query: 225 HLDCISVKPKIRYQG---QEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHV 281
              C+   P +  +     EH L L+       TC AC    +   +F  C++C+F  H 
Sbjct: 230 CRACMKNPPPVGVESPTTHEHQLHLVPR-RIHFTCNACGTLGEQSPYF--CLQCNFMIHR 286

Query: 282 QCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIEC-G 340
           QC     P ++    H H ++ T       + +     C  C++ +D       C++C  
Sbjct: 287 QC--IDLPRVININRHDHRISYTR------RIRHGKGICKVCRKMVDGFYGGYICVKCLS 338

Query: 341 YYIHWRCTV---------------------IEVPLNDTLVHFDHNHFLLPLENGTN---- 375
           + IH RC                        EV  ++T+ HF H+H L    +G      
Sbjct: 339 FAIHARCATREDVWEMVELEGTPEEDEIGPFEVIDDNTIKHFSHDHNLRINNDGDGQILH 398

Query: 376 DDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERG 435
           +++ C AC    +Q  + P Y C  C   LH+ CA  PR+  HV    P T+ T+  E  
Sbjct: 399 ENIVCEACA---LQILSEPFYSCKQCNFKLHQKCANHPRKKHHVYRNLPFTLLTSGNEIF 455

Query: 436 RTCDACQKYLHGHIYKCDSCDFVLDFDCATLQSRVLNHTAKCRKYKFAIS---------E 486
           + C  C +  +G +Y+  S  +V+D  CA +   +   + +   Y ++ +         +
Sbjct: 456 Q-CWLCLQEFNGFMYQ--SGHYVIDVRCAAISDTLEYKSHQHSLYYYSTTYTHCSRCGKK 512

Query: 487 ASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLM--DKHADGNYGTQICDVCEEERD 544
            S   C +C++ L    + LP  + +  +  H L L   + + DG Y    C+ CE + +
Sbjct: 513 DSVFRCDECDYGLGGKCAILPGKVMNNRYDDHPLFLSFDEMNVDGEYW---CEACETKVN 569

Query: 545 QQERVYYCEECDYIADFMCVI 565
            +E  Y C +C       CV+
Sbjct: 570 SKEWFYTCNDCGTTLHISCVV 590

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4678348|emb|CAB41158.1| putative protein [Arabidopsis thaliana]

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 160/631 (25%), Positives = 254/631 (40%), Gaps = 105/631 (16%)

Query: 1   MEQSEKLHMHVHQHPFSCGSR--PERCFACLGE---ISGNFYICGHCDSDSPLFHQSCAE 55
           ME+S  + + +H+HP    SR    RC  C       SG  Y C   D +   +H+ C E
Sbjct: 1   MERS--VDLPIHKHPLYHSSRFINGRCRGCKQTSPIYSG--YRCNDSDCNHVWYHKECGE 56

Query: 56  -LPQLLQTNF--HPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGF 112
            LP++   +   HP C   ++               C FC     G  Y C +C F I  
Sbjct: 57  SLPEINHPSHLEHPLCLIDYRGSGT-----------CAFCGAFLFGPTYHCWICAFNIDI 105

Query: 113 ACAATLIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGP-SYGCLPCKFYIHN 171
           ACA   +      E+   H +H   L+  +V ++ C +C+  + G   Y CL C  Y H 
Sbjct: 106 ACARKQLPPLAAIENPKCH-NHSLVLLEKQVKKDHCGVCKKTVFGMYPYVCLECDVYFHV 164

Query: 172 SCSELPQQVLHPFHAHHSLKL-------QNTFRGLLYCDACDSMIMSAKHYRCDECDFDL 224
            C  + ++V H  H +H+L+L        +  +  L CD     ++    Y C  C+F +
Sbjct: 165 ECINISREVHHSSHTNHTLELFGSESLPDSAQKTCLLCDDVSDHLI----YHCSVCNFSI 220

Query: 225 HLDCISVKPKIRYQ---GQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHV 281
            + C    P +  +     EH L L+        C AC        +F  C+ C +  H 
Sbjct: 221 CVYCAINPPPLAIEHLKTHEHTLTLLPR-QVKFICNACGMKGDGCPYF--CLGCGYLIHR 277

Query: 282 QCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFY--CDACKEEIDPQ-NPFCCCIE 338
           +C     P ++    H H ++LT            L Y  C  C++ ++     + C + 
Sbjct: 278 KC--IDLPRVININRHDHRISLT--------HHLGLQYSECGVCRQSVNGYYGGYSCSLC 327

Query: 339 CGYYIHWRCTV-----------------------IEVPLNDTLVHFDH-NHFLLPLENGT 374
             Y +H +C +                        EV  ++T+ HF H  H L+  +NG 
Sbjct: 328 PNYVVHPQCAMKDDVWDGIELEGTPEDSEQDTAPFEVVDDNTIKHFSHEKHNLMLNKNGI 387

Query: 375 ----NDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTN 430
               ++   C AC   L  D   P+Y C  C   LH+TCA +PR+ +HV +  P T+ T 
Sbjct: 388 ITQHDEITRCQACVLPLSSD---PSYSCGQCDYVLHETCANLPRKKRHVFNNKPFTLHTG 444

Query: 431 DGERGRT---CDACQKYLHGHIYKCDSCDFVLDFDCATLQSRVL------------NHTA 475
             +  R    CDAC+   +G  Y   S D++LD  C ++   +L                
Sbjct: 445 GKDSSRNWFECDACRTISNGFRYV--SGDWILDVHCGSMSEPLLHDGHSHPLYYYRRQGK 502

Query: 476 KCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQ- 534
            CR     + +     C  C+F L    + LP T++H  + +H L+L     D     + 
Sbjct: 503 SCRSCHNKVVKPRVLCCDTCDFDLDFYCANLPKTVKH-CYDEHPLSLCHGEDDVIKDNKY 561

Query: 535 ICDVCEEERDQQERVYYCEECDYIADFMCVI 565
            CD+CE E D ++  Y C +C       CV+
Sbjct: 562 WCDICETETDPKKWFYTCYDCGVTLHVKCVL 592

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331691|ref|NP_680115.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana] gi|332644891|gb|AEE78412.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana]

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 162/626 (25%), Positives = 252/626 (40%), Gaps = 115/626 (18%)

Query: 1   MEQSEKLHMHVHQHPFSCGSR--PERCFACLGE---ISGNFYICGHCDSDSPLFHQSCAE 55
           ME+S  + + +H+HP    SR    RC  C       SG  Y C   D +   +H+ C E
Sbjct: 1   MERS--VDLPIHKHPLYHSSRFINGRCRGCKQTSPIYSG--YRCNDSDCNHVWYHKECGE 56

Query: 56  -LPQLLQTNF--HPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGF 112
            LP++   +   HP C   ++               C FC     G  Y C +C F I  
Sbjct: 57  SLPEINHPSHLEHPLCLIDYRGSGT-----------CAFCGAFLFGPTYHCWICAFNIDI 105

Query: 113 ACAATLIEHYRVQEHIIEHFSHRHPLIRLE--VDEEWCRICRNNILGP-SYGCLPCKFYI 169
           ACA   +      E+      H H L+ LE  V ++ C +C+  + G   Y CL C  Y 
Sbjct: 106 ACARKQLPPLAAIENPK---CHNHSLVLLEKQVKKDHCGVCKKTVFGMYPYVCLECDVYF 162

Query: 170 HNSCSELPQQVLHPFHAHHSLKL-------QNTFRGLLYCDACDSMIMSAKHYRCDECDF 222
           H  C  + ++V H  H +H+L+L        +  +  L CD     ++    Y C  C+F
Sbjct: 163 HVECINISREVHHSSHTNHTLELFGSESLPDSAQKTCLLCDDVSDHLI----YHCSVCNF 218

Query: 223 DLHLDCISVKPKIRYQ---GQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKF 279
            + + C    P +  +     EH L L+        C AC        +F  C+ C +  
Sbjct: 219 SICVYCAINPPPLAIEHLKTHEHTLTLLPR-QVKFICNACGMKGDGCPYF--CLGCGYLI 275

Query: 280 HVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFY--CDACKEEIDPQ-NPFCCC 336
           H +C     P ++    H H ++LT            L Y  C  C++ ++     + C 
Sbjct: 276 HRKC--IDLPRVININRHDHRISLT--------HHLGLQYSECGVCRQSVNGYYGGYSCS 325

Query: 337 IECGYYIHWRCTV-----------------------IEVPLNDTLVHFDH-NHFLLPLEN 372
           +   Y +H +C +                        EV  ++T+ HF H  H L+  +N
Sbjct: 326 LCPNYVVHPQCAMKDDVWDGIELEGTPEDSEQDTAPFEVVDDNTIKHFSHEKHNLMLNKN 385

Query: 373 GT----NDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVT 428
           G     ++   C AC   L  D   P+Y C  C   LH+TCA +PR+ +HV +  P T+ 
Sbjct: 386 GIITQHDEITRCQACVLPLSSD---PSYSCGQCDYVLHETCANLPRKKRHVFNNKPFTLH 442

Query: 429 TNDGERGRT---CDACQKYLHGHIYKCDSCDFVLDFDCATLQSRVL------------NH 473
           T   +  R    CDAC+   +G  Y   S D++LD  C ++   +L              
Sbjct: 443 TGGKDSSRNWFECDACRTISNGFRYV--SGDWILDVHCGSMSEPLLHDGHSHPLYYYRRQ 500

Query: 474 TAKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLM----DKHADG 529
              CR     + +     C  C+F L    + LP T++H  + +H L+L     D   D 
Sbjct: 501 GKSCRSCHNKVVKPRVLCCDTCDFDLDFYCANLPKTVKH-CYDEHPLSLCHGEDDVIKDN 559

Query: 530 NYGTQICDVCEEERDQQERVYYCEEC 555
            Y    CD+CE E D ++  Y C +C
Sbjct: 560 KY---WCDICETETDPKKWFYTCYDC 582

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460297|ref|XP_004147882.1| PREDICTED: uncharacterized protein LOC101207273 [Cucumis sativus] gi|449511613|ref|XP_004164006.1| PREDICTED: uncharacterized LOC101207273 [Cucumis sativus]

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 151/605 (24%), Positives = 234/605 (38%), Gaps = 97/605 (16%)

Query: 25  CFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRT 84
           C+ C   +    +IC  C       HQSC   P  +Q+ FHP   F   +ES+       
Sbjct: 30  CYICKKPLYPPAFICSTCKF---YVHQSCIYFPPQIQSRFHPQ-HFLSLDESNTDH---- 81

Query: 85  LEFGCDFCDQSHKGYKYCCD--LCNFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLE 142
               C  C Q  +   Y C    C F I   C     +   +   I +HFSH HP I LE
Sbjct: 82  ----CHCCWQMPRDCFYTCSHPYCRFIIDIKCLLADTKTPGLNS-IGKHFSHSHPFI-LE 135

Query: 143 VDEEW-----CRICRNNI-LGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTF 196
            D        C +C   +  GP+Y C  C    H +C +LPQ++L     +H L L    
Sbjct: 136 KDISTAKLVVCHVCGMLLPFGPAYFCSECNIRCHKACGDLPQEILQLNQHYHPLFLFPYA 195

Query: 197 RGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSGSGTTTC 256
           +   +C++C +   S   Y C +C+F+LH+ C +         +   ++  K       C
Sbjct: 196 KPKSFCNSCKNEC-SQFVYSCVQCNFNLHVTCRASSNHKHNFTRLRTMIRFK-------C 247

Query: 257 QACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFD 316
             C +      +F  C  C    H +C  A  PP +  + H   L  T       + K  
Sbjct: 248 LLCGWWGHDFPWF--CNICHLLAHEKC--AELPPSLLVVGHDCPLNFTYSHPFVNQSKLA 303

Query: 317 LFYCDACKEEIDPQNPFCCCIECGYYIHWRCT-------------VIEVPLNDTL----- 358
              CD C+++++PQ     C +C Y +H  C               + +   DTL     
Sbjct: 304 ---CDICRKKVEPQFAAYSCSKCSYIVHLNCAGKKYLKGLQQHDGRLYITKKDTLKTSFQ 360

Query: 359 -----------------------VHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNHPT 395
                                  +H +    L+  ++  NDD  C+ C +     +   +
Sbjct: 361 TYCIRDGEAMPNDFSNKTLELQTLHSNCEQGLILNKDERNDDKQCHGCMQRFPITEPSYS 420

Query: 396 YGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERGRTCDACQKYLHGHIYKCDSC 455
           Y C  C  +LHK CA +P   +H LH+H LT+     +    C AC +  HG  Y C+ C
Sbjct: 421 YNCAKCGFFLHKDCADLPITKRHQLHKHSLTLVATQ-DVAFQCHACLQVCHGFAYHCEKC 479

Query: 456 DFVLDFDCATLQSRVLNHTAKCRKYKFAISEASFQDCLKC---------------NFTLH 500
            + LD  C  ++++ L H +       A +    Q C  C               NF+L 
Sbjct: 480 LYTLDLRCFMIKTKKLKHPSHRHLLSLAQNHDD-QQCKGCGQSNKTVFECDDGCSNFSLD 538

Query: 501 LMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCEECDYIAD 560
              + LP  +        SL  +  + +   G   CDVCEEER+     Y+C+ C  +A 
Sbjct: 539 YRCATLPQKVR--CKFDGSLLYLRFYVEDETGEYYCDVCEEERNPNVCFYHCKTCHLMAH 596

Query: 561 FMCVI 565
             C++
Sbjct: 597 PECIL 601

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
TAIR|locus:504955646	619	AT3G48400 "AT3G48400" [Arabido	0.706	0.660	0.254	1.3e-21
TAIR|locus:2151759	652	AT5G37620 [Arabidopsis thalian	0.564	0.501	0.260	6.3e-41
TAIR|locus:2052531	569	AT2G21830 [Arabidopsis thalian	0.701	0.713	0.282	6.8e-40
TAIR|locus:2168123	656	AT5G59930 [Arabidopsis thalian	0.514	0.454	0.270	7.8e-39
TAIR|locus:2168108	710	ULI3 "UV-B LIGHT INSENSITIVE 3	0.550	0.449	0.254	1.2e-35
TAIR|locus:504954854	664	AT5G22355 [Arabidopsis thalian	0.540	0.471	0.309	1.8e-27
TAIR|locus:2125083	652	AT4G01350 [Arabidopsis thalian	0.538	0.478	0.267	1.8e-33
TAIR|locus:2141370	651	AT4G01910 [Arabidopsis thalian	0.649	0.577	0.273	1.8e-26
TAIR|locus:2102747	686	AT3G46810 [Arabidopsis thalian	0.678	0.572	0.255	6e-19
TAIR|locus:2077612	574	AT3G07000 [Arabidopsis thalian	0.549	0.554	0.261	6.6e-16

TAIR|locus:504955646 AT3G48400 "AT3G48400" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 119/467 (25%), Positives = 187/467 (40%)

Query:   134 HRHPLIRLE-VDEEWCRICRNNI-LGPSYGC--LPCKF-YIHNSCSELPQQVLHPFHAHH 188
             H+HPL          CR C+    +   Y C    C   + H  C E   ++ HP H  H
Sbjct:    10 HKHPLYHSSRFINGRCRGCKQTSPIYSGYRCNDSDCNHVWYHKECGESLPEINHPSHLEH 69

Query:   189 SLKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCI--SVKPKIRYQGQE---HL 243
              L L + +RG   C  C + +     Y C  C F++ + C    + P    +  +   H 
Sbjct:    70 PLCLID-YRGSGTCAFCGAFLFGPT-YHCWICAFNIDIACARKQLPPLAAIENPKCHNHS 127

Query:   244 LVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHH-GHSLT 302
             LVL++       C  C   T  G +   C+ECD  FHV+C   S    V H  H  H+L 
Sbjct:   128 LVLLEKQVKKDHCGVCK-KTVFGMYPYVCLECDVYFHVECINISRE--VHHSSHTNHTLE 184

Query:   303 L----TLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIEVPLNDTL 358
             L    +LP DS  K       C  C +++     + C + C + I   C +   PL   +
Sbjct:   185 LFGSESLP-DSAQKT------CLLC-DDVSDHLIYHCSV-CNFSICVYCAINPPPL--AI 233

Query:   359 VHFD-HNHFLLPLENGTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQ 417
              H   H H L  L         C ACG   ++    P Y C  C   +H+ C  +PR I 
Sbjct:   234 EHLKTHEHTLTLLPRQVK--FICNACG---MKGDGCP-YFCLGCGYLIHRKCIDLPRVIN 287

Query:   418 HVLHRHPLTVTTNDGERGRTCDACQKYLHGHI--YKCDSC-DFVLDFDCATLQSRVLNHT 474
                H H +++T + G +   C  C++ ++G+   Y C  C ++V+   CA ++  V +  
Sbjct:   288 INRHDHRISLTHHLGLQYSECGVCRQSVNGYYGGYSCSLCPNYVVHPQCA-MKDDVWDGI 346

Query:   475 AKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQ 534
                        E + +D  +      ++      TI+H SH +H+L +++K+       +
Sbjct:   347 EL---------EGTPEDSEQDTAPFEVVDDN---TIKHFSHEKHNL-MLNKNGIITQHDE 393

Query:   535 I--CDVCEEERDQQERVYYCEECDYIADFMCVIEVTKPTDYFLEKSY 579
             I  C  C          Y C +CDY+    C     K    F  K +
Sbjct:   394 ITRCQACVLPLSSDPS-YSCGQCDYVLHETCANLPRKKRHVFNNKPF 439

GO:0005575 "cellular_component" evidence=ND

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2151759 AT5G37620 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 6.3e-41, Sum P(2) = 6.3e-41
 Identities = 96/368 (26%), Positives = 151/368 (41%)

Query:     5 EKLHMHVHQHPFSCGSRPERCFACLGEISGNFYICG--HCDS---DSPLFHQSCAELPQL 59
             EK+ + +H+HP    +R      C G    + YI G  HC+    ++P FH+ CAE  Q 
Sbjct:     2 EKIELPIHKHPLLPITRFFSRHGCNG-CGSDGYIYGGYHCNELGCETPAFHRECAESLQE 60

Query:    60 LQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAAT-- 117
             ++   HP      +      +  R     C       K Y Y C +C+F++   CA    
Sbjct:    61 IKHFSHPDHPLNLRLNDKASTCNR-----CGI-HLLRKTYIYVCSICDFKLDLHCAKDAA 114

Query:   118 ---LIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGPS--YGCLPCKFYIHNS 172
                ++E+Y + EH ++ F     L R+ + E  C+ C +  L     Y C  CK   H S
Sbjct:   115 PLPILENYNLHEHPLKLFDVSKSLKRVRLRE--CKTCDSPFLIEKLCYICYQCKILFHAS 172

Query:   173 CSELPQQVLHPFHAHHSLKLQNTFRGLLYCDA----CDSMIMSAKH-YRCDECDFDLHLD 227
             C+E   +  H  H  H LKL        Y D     CD      +  + CD C+F +   
Sbjct:   173 CAEFFPEANHTSHPQHPLKLLKFAEAPDYADKKCLLCDEKFDQDQGLHHCDVCNFSICRA 232

Query:   228 CISVKPKIRYQG---QEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCG 284
             C+   P +  +     EH L L+      T C AC    +   +F  C++C+F  H QC 
Sbjct:   233 CMKNPPPVGVESPTTHEHQLHLVPRRIHFT-CNACGTLGEQSPYF--CLQCNFMIHRQC- 288

Query:   285 PASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIEC-GYYI 343
                 P ++    H H ++ T       + +     C  C++ +D       C++C  + I
Sbjct:   289 -IDLPRVININRHDHRISYTR------RIRHGKGICKVCRKMVDGFYGGYICVKCLSFAI 341

Query:   344 HWRCTVIE 351
             H RC   E
Sbjct:   342 HARCATRE 349

GO:0008270 "zinc ion binding" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2052531 AT2G21830 [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 134/474 (28%), Positives = 206/474 (43%)

Query:   129 IEHFSHRHPLIRLEVDEEW-CRIC-RNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHA 186
             +EHFSH  PL   E+  E  C IC ++ ++   Y C PC F I  +CS+LPQ+V H FH+
Sbjct:     4 LEHFSHSCPLTSPEIVAEGICNICFQDQVV--EYACKPCNFDICKTCSKLPQKVSHGFHS 61

Query:   187 HHSLKLQNTFR-----GLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKP-------- 233
              H L+  + F+     G + C  C +M  S   Y C EC+  L L C  +K         
Sbjct:    62 DHPLEF-SLFQYDRKPGYIVCSCCGNM-SSCSFYECKECEIYLDLGCALLKNVFTGWDVR 119

Query:   234 KIRYQGQEHLLVLMKSGSGTT-TCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIV 292
             ++ +   EHLL   K G     +C  C     P +    CV C    H +C     P  +
Sbjct:   120 EMLHYSHEHLLRRCKPGQDARGSCLLCELPLSPSSICYGCVYCYSFLHERC--LDLPTEI 177

Query:   293 EH-IHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIE 351
              H +H  H L        +++     F C AC+E+ID   PF C +ECG+YIH RC   +
Sbjct:   178 RHPVHLEHPLRRL----DYIRSGGRTF-CGACREKIDSV-PFGC-LECGFYIHMRCA--D 228

Query:   352 VPLNDTLVHFDHNHFLLPLENGTNDDVP----CYAC-GKVLIQDQNHPTYGCDPCRIYLH 406
               L   L+H  H H L  + +   +       C  C G V+    ++  Y C  C +  H
Sbjct:   229 SFLR-CLMHESHEHKLFYVSSNAKEHFGRNNCCQICLGAVVSSLDSY--YHCIECELEFH 285

Query:   407 KTCAQMPRQI-QHVLHRHPLTV--TTNDGERGRTCDACQKYLHG--HIYKCDSCDFVLDF 461
               C  + + I +   H HPL       + +    C  C+  +H   H+Y C+ CDF+   
Sbjct:   286 FECLGISKTISKRSCHIHPLVCKRVREEDDSLEYCGVCETLIHAGHHVYSCEECDFLGHI 345

Query:   462 DCATLQSR----VLNHTAKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQ 517
             +C   +       L     C +    +  A+ Q+  + N    +M+        H  +H 
Sbjct:   346 ECILREKEPSPLYLKDLYSCVE---DVKRATNQEDYETN---KVMV--------HDINHN 391

Query:   518 HSLTLMDKHADGNYGTQICDVCEEERDQQERVYYCEECDYIADFMCVIEVTKPT 571
             H +T +D       G + C +CE+E       + CE C+++    CV E+ KP+
Sbjct:   392 HVVTSIDMCE--LEGKEHCHICEKEI--LGNPWKCETCNFVTHNFCV-ELGKPS 440

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2168123 AT5G59930 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 7.8e-39, Sum P(2) = 7.8e-39
 Identities = 91/336 (27%), Positives = 128/336 (38%)

Query:    24 RCFACLGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKR 83
             RC  C   ++G  Y    C+      H+ C ELP  +   FHP        E   +S   
Sbjct:    25 RCHIC--SVTGAIYNGYFCNDPIVWMHKECVELPSEINHLFHPQHPLLLTYEEGWWSC-- 80

Query:    84 TLEFGCDFCDQSHKG-YKYCCDLCNFQIGFACAATLIEHYRVQEHIIEH-FSHRHPLIRL 141
                F C  C ++    Y Y C  C  ++   C              IEH   H HPL+ L
Sbjct:    81 ---F-CALCGETKPAKYFYSCSTCKIKVDLTCGMN------PPPPAIEHPICHDHPLVFL 130

Query:   142 EVDEEW--CRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGL 199
             +  +E   C +C+N ILG SY CL C+ Y H  C  L ++V HP H+ H L L  +   L
Sbjct:   131 KKRQEKTPCEVCKNRILGSSYSCLGCELYFHVGCIHLSKEVNHPCHSDHPLMLVES-ESL 189

Query:   200 LYCDACDSMIMSAK-H---YRCDECDFDLHLDCISVKPKIRYQG---QEHLLVLMKSGSG 252
                D     +   + H   Y C  C+F L + CI   P +  +     +H L     G  
Sbjct:   190 TDNDKKTCFLCGQQPHGILYHCSICNFTLCIGCIKSPPPLVVENVKTHKHPLTFFPRGV- 248

Query:   253 TTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVK 312
               TC  C    K       C++C F  H  C     P ++    H H ++ T        
Sbjct:   249 YCTCNVCG--VKGLILSYMCLQCGFAVHCSC--VDLPQVININRHDHRISFTQHLGP--- 301

Query:   313 DKFDLFYCDACKEEIDPQNPFCCCIEC-GYYIHWRC 347
                    C  C+  +   N    C+ C  Y +H RC
Sbjct:   302 ---GYLNCGVCRRSVCQFNGAYSCLVCPNYAVHSRC 334

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2168108 ULI3 "UV-B LIGHT INSENSITIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 92/361 (25%), Positives = 142/361 (39%)

Query:     4 SEKLHMHVHQHPFSCGSR--PERCFACLGEISGNFYICGHCDSDSPL--FHQSCAELPQL 59
             +E + + +H+HP    +R   + C  C   ++G  Y    C+       FH+ CAE P  
Sbjct:     3 TEAVDLPIHEHPLFPSARCIDDECDGC--HVNGFMYAGYFCNEPYCYVWFHKDCAEAPGE 60

Query:    60 LQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLI 119
             +  + HP        +S         +  CD C Q      Y C  C F++   C     
Sbjct:    61 ISHSSHPEHPLLLTNDSK--------DGPCDLCGQKLLTPCYSCPTCEFKVDLTCGM--- 109

Query:   120 EHYRVQEHIIEH-FSHRHPLIRLEVDEEW--CRICRNNILGPSYGCLPCKFYIHNSCSEL 176
                +     IEH   H H ++ L++ EE   C +C+ +I GPSY CL C  Y H +C  L
Sbjct:   110 ---KPSPPAIEHPLCHDHAVVFLKIREEKVPCELCKESIEGPSYSCLECDMYFHVNCVHL 166

Query:   177 PQQVLHPFHAHHSLKLQN----TFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVK 232
              ++V HP H+ H LKL      T      C  C ++      Y C  C+F   L C    
Sbjct:   167 SEEVNHPCHSIHPLKLITSESLTDDAEKSCLLCGNIPAENMLYHCSVCNFTSCLGCTKNP 226

Query:   233 PKI---RYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPP 289
             P +     +  +H L L+     +  C  C    +  A+   C++CDF    +C     P
Sbjct:   227 PLLVIEHMKTHKHPLTLLPRRI-SCICDVCGKKCQFTAYV--CLQCDFVTARKC--IDRP 281

Query:   290 PIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIEC-GYYIHWRCT 348
              ++    H H + LT    +   +      C  C + +        C  C  Y +H  C 
Sbjct:   282 RVININRHDHRIYLTHHLGTGYSE------CGVCHKNVSQYKGAYSCSVCPNYAVHSTCA 335

Query:   349 V 349
             V
Sbjct:   336 V 336

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009411 "response to UV" evidence=IMP

GO:0010224 "response to UV-B" evidence=IMP

GO:0019992 "diacylglycerol binding" evidence=ISS

GO:0020037 "heme binding" evidence=ISS

TAIR|locus:504954854 AT5G22355 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 1.8e-27, P = 1.8e-27
 Identities = 109/352 (30%), Positives = 153/352 (43%)

Query:   133 SHRHPL-IRLEVDEEWCRICRNNILGPSYGCLPCK------FYIHNSCSELPQQVL-HPF 184
             +H++PL I      + C+ C  NI GP YG   C        + H  C+E P +++ HP 
Sbjct:    10 THKYPLTISTRFVNDSCKGC--NIKGPIYGGYRCNEPSSTSLFFHKECAEAPPEIINHPS 67

Query:   185 HAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCD-ECDFDLHLDC-ISVKP-KIRY-QGQ 240
             H  H+LKL N+ R    C+ C      A  YRC  +CDF + L C I+  P  I + +  
Sbjct:    68 HPQHTLKLHNSLRNPCKCNLCGKTFF-AFGYRCSSKCDFIVDLTCGINPLPVSIEHPKSH 126

Query:   241 EHLLVLMKSGS--GTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHG 298
              H ++ +K  +  G   C  C      G  +  C+EC+  FHV+C   S    V H  H 
Sbjct:   127 HHPVIFLKEPAKPGRRRCGICK-GYNGGCSYA-CLECEVHFHVECVNLSQE--VNHPSHP 182

Query:   299 -HSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIEVPLNDT 357
              HSL L L  +S   D  +   C  C E   P      C  C + +   CT    PL   
Sbjct:   183 QHSLKL-LEYESLTSDAEET--CLLCGER--PDKVLYRCSICNFSVCRFCTKDPPPLAIE 237

Query:   358 LVHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQIQ 417
               H  H H L+ L    + +  C ACG   +Q    P Y C  C   +H+TC  +PR I 
Sbjct:   238 H-HKTHEHRLVLLSRLISFE--CNACG---MQGDRSP-YMCVQCGFVVHRTCIDLPRVIN 290

Query:   418 HVLHRHPLTVTTNDGERGRTCDACQKYL---HGHIYKCDSC-DFVLDFDCAT 465
                H H ++ T + G     C  C+K +   HG  Y C  C ++     CAT
Sbjct:   291 INRHDHRISFTHHLGVGYSRCGICRKDISQYHG-AYLCPRCPNYAAHSLCAT 341

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2125083 AT4G01350 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
 Identities = 97/362 (26%), Positives = 146/362 (40%)

Query:     7 LHMHVHQHPFSCGSRP--ERCFACLGEISGNFYICGHCDSDSPL--FHQSCAELP-QLLQ 61
             +++ +H+HP    +R     C  C   ++G  Y    C+       FH+ CAE P ++  
Sbjct:     6 VNLPIHEHPLYPSARCIIGECDGC--HVNGYMYNGYFCNEPFCFIWFHKECAEAPAEISH 63

Query:    62 TNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLIEH 121
             ++ H H          +     +++  CD C Q      Y C  C F++   CA      
Sbjct:    64 SSHHQH---------PLLLTNDSIDGPCDLCGQKLLPPCYSCSTCEFKVDLTCAM----- 109

Query:   122 YRVQEHIIEH-FSHRHPLIRLEVDEEW--CRICRNNILGPSYGCLPCKFYIHNSCSELPQ 178
              +     IEH   H H L+ L+  EE   C +C+++I GPSY CL C  Y H +C +L +
Sbjct:   110 -KPSPPAIEHPLCHHHSLVFLKKREEKVSCELCKDSIAGPSYSCLECDVYFHVNCIQLSK 168

Query:   179 QVLHPFHAHHSLKLQNTFRGLL-----YCDACDSMIMSAKHYRCDECDFDLHLDCISVKP 233
             +V HP H+ H LKL   F  L       C  C         Y C  C+F   L C    P
Sbjct:   169 EVNHPCHSAHPLKLI-PFESLTDDAETTCLLCGKKPAENMLYHCSVCNFTSCLGCTKNPP 227

Query:   234 KI---RYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPP 290
              +     +  +H L+L         C  C    +  A +V C +CDF     C   +   
Sbjct:   228 LLVIEHIKTHKHPLILFPRRI-PCICDICGKKCE-FAVYV-CPQCDFVTARGCIDLAR-- 282

Query:   291 IVEHIHHGHSLTLT--LPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYY-IHWRC 347
             ++    H H + LT  L T  + K       C  C E ++       C  C +Y +H  C
Sbjct:   283 VININRHDHRIYLTHHLGT-GYSK-------CGVCHENVNQYKGAYSCSVCPHYAVHSTC 334

Query:   348 TV 349
              V
Sbjct:   335 AV 336

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2141370 AT4G01910 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 1.8e-26, P = 1.8e-26
 Identities = 115/421 (27%), Positives = 170/421 (40%)

Query:   156 LGPSYGCLPCKFYIHNSCSE-LPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKH 214
             +   Y C  C F++H +C + + + + HP H +H+L+L +  R   +CD C        +
Sbjct:    35 ISDGYYCKRCDFFVHKTCGDGVSEYIEHPSHPNHTLELCSNLR--FHCDLCGRRTNYLSY 92

Query:   215 YRCDECDFDLHLDCISVKPKIRYQGQE---HLLVLMKSGSGTTTCQACSFDTKPGAFFVR 271
             Y C+ C F + L C    P    +  E   H L L+K       C A         F  +
Sbjct:    93 Y-CEICGFIVDLHCAMYPPPEFIENSERHHHKLTLLKERIAAFDCDAKCGKISGNEFAYK 151

Query:   272 CVECDFKFHVQC--GPASP--PPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEI 327
             C ECD  FHV C   P+    P  V H +H  S  L L T    +  +    C  C  +I
Sbjct:   152 CQECDLTFHVDCVWHPSEVYHPLEVNHSYHP-SHPLKLHTGQ--RPDYSDGACRLCARKI 208

Query:   328 DPQNPFCCCIECGYYIHWRCTVIEVPLNDTLVHFDHNHFLLPLENGTNDDVPCYACGKVL 387
             D +  F  C  C + +  RC V+  P    L    H+H L  L     D   C ACG   
Sbjct:   209 DDRY-FYHCSSCNFTLDMRC-VLHPPQQSLLNLKAHDHQLTLLPR--LDSFTCNACG--- 261

Query:   388 IQDQNHPTYGCDPCRIYLHKTCAQMPRQIQHVLHRHPLTVTTNDGERGRTCDACQKYLHG 447
             ++    P Y C  C   +H+ C  +PR I    H H ++ T+  G     C+ C + +  
Sbjct:   262 LKGDRSP-YVCFQCGFMIHQDCLSLPRLININRHDHRVSRTSVLGVVNSVCEVCHRKVDW 320

Query:   448 HI--YKCDSCD-FVLDFDCATLQSRVLNHTAKCRKYKFAISEASFQDCLKCNFTLHLMLS 504
                 + C  C  +V+   CAT +  V N      K    + E + +D +K    +     
Sbjct:   321 TCGGFSCQRCSGYVVHSKCATNKD-VWNG-----KELEGVPEET-ED-IKPFVVIDNN-- 370

Query:   505 PLPLTIEHMSHHQHSLTLMDKHADGNY--GTQICDVCEEERDQQERVYYCEECDYIADFM 562
                 TI+H SH +H L L   H +G      + C  C      Q   Y C +CD+I    
Sbjct:   371 ----TIQHFSHKKHYLRL---HVNGVLCDDKKRCRACTHPICLQS-FYGCMDCDFILHQN 422

Query:   563 C 563
             C
Sbjct:   423 C 423

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2102747 AT3G46810 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 6.0e-19, P = 6.0e-19
 Identities = 117/458 (25%), Positives = 171/458 (37%)

Query:   134 HRHPLIRLE-VDEEWCRIC-RNNILGPSYGC--LPCKFYIHNSCSELPQQVLHPFHAHHS 189
             H HPL+  E      C  C R       Y C  L C    H  C+E   ++ H  H  H 
Sbjct:     9 HDHPLLPFERFYFGRCSGCSREGYFYGGYRCNELACFAVFHKECAESKPEISHHAHPKHL 68

Query:   190 LKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDC-----ISVKPKI----RYQGQ 240
             LKL N  +    C  C+  +     Y C  CDF +HL C     +S++P++     Y+  
Sbjct:    69 LKLGNRRQR---CHLCERPVGIG--YFCSICDFGMHLVCAKSPPLSLQPQLSSIENYKVH 123

Query:   241 EHLLVLMKSG--SGTTTCQACSFDTKPG--AFFVRCVECDFKFHVQCGPASPPPIVEHIH 296
             EH L   K+   + T  C+ C++    G  A F  C  C    HV C          H  
Sbjct:   124 EHPLKPFKTAWLAETGNCKGCNYIIGNGDSAPFYECRRCKLYIHVTCLELFFTTDARHNS 183

Query:   297 H-GHSLT-LTLPTDSFVKDKFDLFYCDACKEEIDPQN----PFCCCIECGYYIHWRCTVI 350
             H  H L  L     S+   K     C  C  E + Q         C  C + I   C   
Sbjct:   184 HLKHPLKYLKNGPPSYADHK-----CLLCGREFEDQQGQKYELYHCDVCNFSICISCQGN 238

Query:   351 EVPLNDTLVHFDHNHFLLPLENGTNDDVPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCA 410
               PL   +    H H L  +      D  C ACG    Q    P Y C  C   +H+ C 
Sbjct:   239 PPPLV-VVTPKTHEHQLHLIPRLL--DFTCNACGT---QGDRSP-YFCLQCNFMIHRGCI 291

Query:   411 QMPRQIQHVLHRHPLTVTTNDGERGRTCDACQKYLHGHI--YKCDSCD-FVLDFDCATLQ 467
              +PR I    H H ++   + G+    C  C+K + G    Y C  C  +V+   CAT +
Sbjct:   292 DLPRIININRHDHRISYICHLGQGNLKCGVCRKTVDGFYGAYSCSKCSSYVVHSLCATRK 351

Query:   468 S--RVLNHTAKCRKYKFAISEASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDK 525
                 ++       + + A  E   ++                 TI+HMSH  H L + + 
Sbjct:   352 DVWDMVELEGTPEEEEIAPFEVVDEN-----------------TIKHMSH-DHDL-IFNN 392

Query:   526 HADGNYGTQICDVCEEERDQQERVYYCEECDYIADFMC 563
                  + +++C+ C  + +  +  Y CE C +I    C
Sbjct:   393 DGINLHESKLCEACVSQINT-DPFYSCELCGFILHQTC 429

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2077612 AT3G07000 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 6.6e-16, P = 6.6e-16
 Identities = 97/371 (26%), Positives = 156/371 (42%)

Query:    12 HQHPFSCGSRPER--CFAC--LGEISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPH 67
             H+H F+   R     C AC  LG+   N Y C  C     + H+ C +LP+++  N H H
Sbjct:   132 HEHTFTLMPRKITFTCNACGMLGDC--NPYFCFECGF---MLHKDCIDLPRVININRHDH 186

Query:    68 --CRFRFKEESDVFSF---KRTLE-----FGCDFCDQSHKGYKYCC---DLCNFQI--GF 112
                R       D  S    ++ ++     + C  C  ++  +  C    D+ N +     
Sbjct:   187 RISRTYHLGHGDWGSCGVCRKEIDWSLGAYSCKRCP-NYAVHSKCAIREDVWNGEELEDV 245

Query:   113 ACAATLIEH-YRV-QEHIIEHFSHRHPLIRLEVDEE-------WCRICRNNILG-PSYGC 162
                   IE  Y+V  +  I HF H    +RL  D++        C  C   I   P + C
Sbjct:   246 PEEEEEIEDPYKVVNDKEIIHFCHEEHNLRLGGDDDVTGYEKMLCDACITPISSDPFFKC 305

Query:   163 LPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLY-CDACDSMIMSAKHYRCDECD 221
             + C+F++H  C+ LP++  +  H    L LQ T  G    C +C   I     Y C   +
Sbjct:   306 VQCEFFLHKVCASLPRRKRNIMHTE-KLDLQVTKAGEYNKCISCRK-IFDGFRY-CSRFE 362

Query:   222 -FDLHLDCISVKPKIRYQGQEHLLV-LMKSGSGTTTCQACSFDTKPGAFFVRCVECDFKF 279
              FD+   C S+     ++   H L  ++ +      C AC    K   + + C  C+F  
Sbjct:   363 KFDVR--CGSISEPFHHELHPHPLYHILSAAEKLKLCGACG---KYLHYVLSCTVCEFNL 417

Query:   280 HVQCGPASPPPIVEHIHHGHSLTLT-LPTDSFVKDKFDLFYCDACKEEIDPQNPFCCCIE 338
              + C  A+ P  V HI   H L+L  +P +S    K    +CD+C+ ++DP   F  C +
Sbjct:   418 GMDC--ATLPRKVRHICDAHDLSLHHVPGNS----KGQQLWCDSCEGKLDPSVWFYGCDD 471

Query:   339 CGYYIHWRCTV 349
             CG  +H +C +
Sbjct:   472 CGSTLHIKCVL 482

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00190202 hypothetical protein (838 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	579
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	98.41
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	98.32
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	98.24
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	98.0
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	97.36
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	96.99
KOG0696	683	consensus Serine/threonine protein kinase [Signal	96.52
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	96.18
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	96.15
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	96.11
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	96.11
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	96.07
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	95.93
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	95.69
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	95.61
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	95.6
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	95.58
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	95.42
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	95.38
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	95.19
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	95.13
KOG0696	683	consensus Serine/threonine protein kinase [Signal	94.9
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	94.85
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	94.8
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	94.73
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	94.63
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	94.6
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	94.41
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	94.27
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	93.97
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	93.96
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	93.95
cd00029	50	C1 Protein kinase C conserved region 1 (C1) . Cyst	93.64
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	93.62
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	93.61
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	93.54
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	93.54
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	93.02
KOG1280	381	consensus Uncharacterized conserved protein contai	92.93
smart00109	49	C1 Protein kinase C conserved region 1 (C1) domain	92.5
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	91.86
KOG1280	381	consensus Uncharacterized conserved protein contai	91.35
cd00029	50	C1 Protein kinase C conserved region 1 (C1) . Cyst	90.68
smart00109	49	C1 Protein kinase C conserved region 1 (C1) domain	89.9
KOG0956	900	consensus PHD finger protein AF10 [General functio	89.24
KOG0957	707	consensus PHD finger protein [General function pre	86.95
KOG4582	278	consensus Uncharacterized conserved protein, conta	86.82
KOG0957	707	consensus PHD finger protein [General function pre	86.15
KOG4582	278	consensus Uncharacterized conserved protein, conta	85.4
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	84.35
KOG1512	381	consensus PHD Zn-finger protein [General function	80.78
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	80.09

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=98.41  E-value=1.5e-07  Score=63.08  Aligned_cols=30  Identities=43%  Similarity=1.115  Sum_probs=28.4

Q ss_pred             ccccccccccCCCCCeeeecccCeEEecccc
Q 039635          318 FYCDACKEEIDPQNPFCCCIECGYYIHWRCT  348 (579)
Q Consensus       318 ~~C~~C~~~~~~~~~~Y~C~~C~f~lh~~C~  348 (579)
                      |+|++|++++++++ +|+|++|+|++|++||
T Consensus         1 ~~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca   30 (30)
T PF03107_consen    1 FWCDVCRRKIDGFY-FYHCSECCFTLHVRCA   30 (30)
T ss_pred             CCCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence            57999999999988 9999999999999997

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=98.32  E-value=3.2e-07  Score=61.40  Aligned_cols=30  Identities=33%  Similarity=0.752  Sum_probs=27.7

Q ss_pred             ccccccccccCCcceEEEcCCCCCccccccc
Q 039635          534 QICDVCEEERDQQERVYYCEECDYIADFMCV  564 (579)
Q Consensus       534 ~~C~~Ce~~~~~~~~~y~C~~C~~~lh~~C~  564 (579)
                      +||++|++++++.. +|+|++|+|++|++||
T Consensus         1 ~~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca   30 (30)
T PF03107_consen    1 FWCDVCRRKIDGFY-FYHCSECCFTLHVRCA   30 (30)
T ss_pred             CCCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence            58999999998877 9999999999999997

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=98.24  E-value=2.7e-07  Score=61.84  Aligned_cols=30  Identities=40%  Similarity=0.814  Sum_probs=13.9

Q ss_pred             CcccccccccccCCCCCceeecCCCceeccccc
Q 039635          378 VPCYACGKVLIQDQNHPTYGCDPCRIYLHKTCA  410 (579)
Q Consensus       378 ~~C~aC~~~i~~~~~~~~Y~C~~C~f~lH~~Ca  410 (579)
                      ++|++|++++.   .+..|.|.+|||+||++||
T Consensus         1 ~~C~~C~~~~~---~~~~Y~C~~Cdf~lH~~Ca   30 (30)
T PF07649_consen    1 FRCDACGKPID---GGWFYRCSECDFDLHEECA   30 (30)
T ss_dssp             ---TTTS-------S--EEE-TTT-----HHHH
T ss_pred             CcCCcCCCcCC---CCceEECccCCCccChhcC
Confidence            47999999984   3599999999999999997

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=98.00  E-value=2.5e-06  Score=57.10  Aligned_cols=29  Identities=38%  Similarity=0.998  Sum_probs=14.1

Q ss_pred             ccccccccCCCC-CeeecCCCCcccChhhh
Q 039635           87 FGCDFCDQSHKG-YKYCCDLCNFQIGFACA  115 (579)
Q Consensus        87 ~~C~~C~~~~~g-~~Y~C~~C~f~lh~~Ca  115 (579)
                      +.|++|++++.+ ..|+|.+|||++|..||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca   30 (30)
T PF07649_consen    1 FRCDACGKPIDGGWFYRCSECDFDLHEECA   30 (30)
T ss_dssp             ---TTTS----S--EEE-TTT-----HHHH
T ss_pred             CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence            369999999987 66999999999999997

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=97.36  E-value=0.00015  Score=52.72  Aligned_cols=39  Identities=31%  Similarity=0.781  Sum_probs=32.9

Q ss_pred             cccccccccCCCcEEeCCC-CCccCccccCCCceeecCCCCCCeeE
Q 039635          147 WCRICRNNILGPSYGCLPC-KFYIHNSCSELPQQVLHPFHAHHSLK  191 (579)
Q Consensus       147 ~C~~C~~~~~~~~Y~C~~C-~f~~H~~C~~~P~~i~hp~Hp~H~L~  191 (579)
                      .|++|+.++.|.+|+|.+| ||+|+.+|...+   .|   +.|++.
T Consensus         2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~---~H---~~H~f~   41 (43)
T cd02340           2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG---VH---PEHAML   41 (43)
T ss_pred             CCCCCCCcCcCCeEECCCCCCccchHHhhCcC---CC---CCCCEE
Confidence            6999999999999999999 899999999855   33   456664

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=96.99  E-value=0.00061  Score=49.55  Aligned_cols=32  Identities=25%  Similarity=0.507  Sum_probs=29.5

Q ss_pred             CcccccccccccCCCCCceeecCC-CceecccccCCC
Q 039635          378 VPCYACGKVLIQDQNHPTYGCDPC-RIYLHKTCAQMP  413 (579)
Q Consensus       378 ~~C~aC~~~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP  413 (579)
                      +.|++|+++|    .|..|+|.+| ||.|++.|...+
T Consensus         1 v~Cd~C~~~i----~G~ry~C~~C~d~dLC~~C~~~~   33 (43)
T cd02340           1 VICDGCQGPI----VGVRYKCLVCPDYDLCESCEAKG   33 (43)
T ss_pred             CCCCCCCCcC----cCCeEECCCCCCccchHHhhCcC
Confidence            4799999988    7999999999 999999999977

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.52  E-value=0.00068  Score=71.39  Aligned_cols=95  Identities=23%  Similarity=0.485  Sum_probs=71.4

Q ss_pred             CcceeecC--CCCCCccccCCCCCC---cEEcCCCCCCCccccccccCC-----CccE-----eecCCCCCceEEeeccc
Q 039635           13 QHPFSCGS--RPERCFACLGEISGN---FYICGHCDSDSPLFHQSCAEL-----PQLL-----QTNFHPHCRFRFKEESD   77 (579)
Q Consensus        13 ~H~l~~~~--~~~~C~~C~~~~~~~---~Y~C~~C~~~~~~~Hk~C~~~-----p~~I-----~hp~Hp~H~L~l~~~~~   77 (579)
                      .|.++..-  .+..|..|++.+||.   ++.|..|-|   ++||.|.+.     |..=     .-|. .+|-+++..   
T Consensus        45 ~HkF~aRFFKqPTfCsHCkDFiwGfgKQGfQCqvC~f---vvHkrChefVtF~CPGadkg~dtDdpr-~kHkf~~~t---  117 (683)
T KOG0696|consen   45 SHKFIARFFKQPTFCSHCKDFIWGFGKQGFQCQVCCF---VVHKRCHEFVTFSCPGADKGPDTDDPR-SKHKFKIHT---  117 (683)
T ss_pred             cceeeehhccCCchhhhhhhheeccccCceeeeEEee---hhhhhhcceEEEECCCCCCCCCCCCcc-cccceeeee---
Confidence            46665443  388999998877765   799999999   999999972     2211     1221 267777665   


Q ss_pred             cccccccccccccccccCCCCCe---eecCCCCcccChhhhcccc
Q 039635           78 VFSFKRTLEFGCDFCDQSHKGYK---YCCDLCNFQIGFACAATLI  119 (579)
Q Consensus        78 ~~~~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lh~~Ca~~~~  119 (579)
                          +.. .-+||-||.-+.|..   .+|+.|+.+||..|....+
T Consensus       118 ----Yss-PTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVP  157 (683)
T KOG0696|consen  118 ----YSS-PTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVP  157 (683)
T ss_pred             ----cCC-CchhhhHHHHHHHHHhcccccccccchHHHHHhhcCC
Confidence                222 458999999998865   8999999999999999866

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=96.18  E-value=0.0037  Score=46.83  Aligned_cols=46  Identities=26%  Similarity=0.548  Sum_probs=34.7

Q ss_pred             Ccccccc-cccccCCCCCceeecCC-CceecccccCCCcccccccCCCCeEE
Q 039635          378 VPCYACG-KVLIQDQNHPTYGCDPC-RIYLHKTCAQMPRQIQHVLHRHPLTV  427 (579)
Q Consensus       378 ~~C~aC~-~~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~~~~h~~H~h~L~l  427 (579)
                      ++|++|+ .+|    .|..|+|.+| ||.|.+.|..-+.+..-..-.||..+
T Consensus         1 i~C~~C~~~~i----~g~R~~C~~C~d~dlC~~Cf~~~~~~~~H~~~H~~~~   48 (49)
T cd02338           1 VSCDGCGKSNF----TGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQC   48 (49)
T ss_pred             CCCCCCcCCCc----EEeeEEeCCCCCCccchhHHhCCCcCCCCCCCCCEEE
Confidence            4799999 677    6899999999 99999999997765322122366654

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>cd02249 ZZ Zinc finger, ZZ type

Probab=96.15  E-value=0.0036  Score=46.19  Aligned_cols=33  Identities=24%  Similarity=0.494  Sum_probs=30.1

Q ss_pred             CcccccccccccCCCCCceeecCC-CceecccccCCCc
Q 039635          378 VPCYACGKVLIQDQNHPTYGCDPC-RIYLHKTCAQMPR  414 (579)
Q Consensus       378 ~~C~aC~~~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~  414 (579)
                      +.|++|+.+|    .|..|.|.+| ||.|...|...+.
T Consensus         1 ~~C~~C~~~i----~g~r~~C~~C~d~dLC~~Cf~~~~   34 (46)
T cd02249           1 YSCDGCLKPI----VGVRYHCLVCEDFDLCSSCYAKGK   34 (46)
T ss_pred             CCCcCCCCCC----cCCEEECCCCCCCcCHHHHHCcCc
Confidence            4699999988    6799999999 7999999999887

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>cd02249 ZZ Zinc finger, ZZ type

Probab=96.11  E-value=0.0051  Score=45.36  Aligned_cols=33  Identities=33%  Similarity=0.693  Sum_probs=29.4

Q ss_pred             ccccccccccCCCcEEeCCC-CCccCccccCCCc
Q 039635          146 EWCRICRNNILGPSYGCLPC-KFYIHNSCSELPQ  178 (579)
Q Consensus       146 ~~C~~C~~~~~~~~Y~C~~C-~f~~H~~C~~~P~  178 (579)
                      +.|++|+.++.|..|+|.+| ||+|...|...+.
T Consensus         1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~   34 (46)
T cd02249           1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK   34 (46)
T ss_pred             CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence            36999999999999999999 6999999998664

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=96.11  E-value=0.0045  Score=45.45  Aligned_cols=30  Identities=27%  Similarity=0.813  Sum_probs=27.0

Q ss_pred             cccccc-cccCCCcEEeCCC-CCccCccccCC
Q 039635          147 WCRICR-NNILGPSYGCLPC-KFYIHNSCSEL  176 (579)
Q Consensus       147 ~C~~C~-~~~~~~~Y~C~~C-~f~~H~~C~~~  176 (579)
                      .|++|+ .++.|.+|+|.+| ||+|+..|...
T Consensus         2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~   33 (45)
T cd02339           2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG   33 (45)
T ss_pred             CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence            699998 5678999999999 89999999973

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=96.07  E-value=0.0041  Score=45.67  Aligned_cols=31  Identities=23%  Similarity=0.523  Sum_probs=27.5

Q ss_pred             Ccccccc-cccccCCCCCceeecCC-CceecccccCC
Q 039635          378 VPCYACG-KVLIQDQNHPTYGCDPC-RIYLHKTCAQM  412 (579)
Q Consensus       378 ~~C~aC~-~~i~~~~~~~~Y~C~~C-~f~lH~~Ca~l  412 (579)
                      +.|++|+ .+|    .|..|+|.+| ||.|++.|...
T Consensus         1 i~Cd~C~~~~i----~G~RykC~~C~dyDLC~~C~~~   33 (45)
T cd02339           1 IICDTCRKQGI----IGIRWKCAECPNYDLCTTCYHG   33 (45)
T ss_pred             CCCCCCCCCCc----ccCeEECCCCCCccchHHHhCC
Confidence            4699999 466    7999999999 99999999984

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=95.93  E-value=0.0046  Score=46.82  Aligned_cols=32  Identities=25%  Similarity=0.631  Sum_probs=27.1

Q ss_pred             ccccccccccc---CCCcEEeCCCCCccCccccCC
Q 039635          145 EEWCRICRNNI---LGPSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       145 ~~~C~~C~~~~---~~~~Y~C~~C~f~~H~~C~~~  176 (579)
                      +..|++|++.+   ...+|+|..|++.+|+.|++.
T Consensus        11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~   45 (53)
T PF00130_consen   11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK   45 (53)
T ss_dssp             TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred             CCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence            78999999998   557899999999999999985

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=95.69  E-value=0.0086  Score=44.84  Aligned_cols=44  Identities=25%  Similarity=0.577  Sum_probs=34.3

Q ss_pred             cccccc-cccCCCcEEeCCC-CCccCccccCCCceeecCCC-CCCeeEE
Q 039635          147 WCRICR-NNILGPSYGCLPC-KFYIHNSCSELPQQVLHPFH-AHHSLKL  192 (579)
Q Consensus       147 ~C~~C~-~~~~~~~Y~C~~C-~f~~H~~C~~~P~~i~hp~H-p~H~L~L  192 (579)
                      .|++|+ .++.|.+|+|.+| ||++..+|...+.+.  ..| +.||.++
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~--~~H~~~H~~~~   48 (49)
T cd02338           2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTT--ERHLFDHPMQC   48 (49)
T ss_pred             CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcC--CCCCCCCCEEE
Confidence            699999 6788999999999 999999999866442  223 2577664

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=95.61  E-value=0.012  Score=43.20  Aligned_cols=31  Identities=29%  Similarity=0.672  Sum_probs=27.5

Q ss_pred             ccccccc-CCCCCeeecCCC-CcccChhhhccc
Q 039635           88 GCDFCDQ-SHKGYKYCCDLC-NFQIGFACAATL  118 (579)
Q Consensus        88 ~C~~C~~-~~~g~~Y~C~~C-~f~lh~~Ca~~~  118 (579)
                      .|++|+. ++.|..|+|..| ||+|.+.|....
T Consensus         2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~   34 (45)
T cd02344           2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKTR   34 (45)
T ss_pred             CCCCCCCCCCccCeEECCCCCCccchHHhhCCC
Confidence            6999995 688999999999 899999998863

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=95.60  E-value=0.011  Score=43.34  Aligned_cols=31  Identities=26%  Similarity=0.740  Sum_probs=28.1

Q ss_pred             Cccccccc-ccccCCCCCceeecCC-CceecccccCC
Q 039635          378 VPCYACGK-VLIQDQNHPTYGCDPC-RIYLHKTCAQM  412 (579)
Q Consensus       378 ~~C~aC~~-~i~~~~~~~~Y~C~~C-~f~lH~~Ca~l  412 (579)
                      ++|++|+. ||    .|..|+|.+| ||.|.+.|...
T Consensus         1 V~Cd~C~~~pI----~G~RykC~~C~dyDLC~~Cf~~   33 (45)
T cd02344           1 VTCDGCQMFPI----NGPRFKCRNCDDFDFCENCFKT   33 (45)
T ss_pred             CCCCCCCCCCC----ccCeEECCCCCCccchHHhhCC
Confidence            47999996 77    7999999999 89999999988

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=95.58  E-value=0.013  Score=43.93  Aligned_cols=36  Identities=22%  Similarity=0.436  Sum_probs=31.7

Q ss_pred             CcccccccccccCCCCCceeecCC-CceecccccCCCccc
Q 039635          378 VPCYACGKVLIQDQNHPTYGCDPC-RIYLHKTCAQMPRQI  416 (579)
Q Consensus       378 ~~C~aC~~~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~~~  416 (579)
                      ++|++|.+.+.   .|..|+|.+| ||.|...|...+...
T Consensus         1 ~~Cd~C~~~~~---~g~r~~C~~C~d~dLC~~Cf~~g~~~   37 (49)
T cd02335           1 YHCDYCSKDIT---GTIRIKCAECPDFDLCLECFSAGAEI   37 (49)
T ss_pred             CCCCCcCCCCC---CCcEEECCCCCCcchhHHhhhCcCCC
Confidence            46999999885   6799999999 999999999988754

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=95.42  E-value=0.0082  Score=43.17  Aligned_cols=32  Identities=22%  Similarity=0.443  Sum_probs=27.8

Q ss_pred             Cccccccc-ccccCCCCCceeecCC-CceecccccCCC
Q 039635          378 VPCYACGK-VLIQDQNHPTYGCDPC-RIYLHKTCAQMP  413 (579)
Q Consensus       378 ~~C~aC~~-~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP  413 (579)
                      ++|++|+. ||    .|..|+|..| ||.|.+.|-.-+
T Consensus         1 I~CDgCg~~PI----~G~RykC~~C~dyDLC~~C~~~~   34 (43)
T cd02342           1 IQCDGCGVLPI----TGPRYKSKVKEDYDLCTICFSRM   34 (43)
T ss_pred             CCCCCCCCCcc----cccceEeCCCCCCccHHHHhhhh
Confidence            47999997 77    7999999999 999999997643

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=95.38  E-value=0.015  Score=43.95  Aligned_cols=34  Identities=24%  Similarity=0.525  Sum_probs=27.2

Q ss_pred             cccccccccCCCCC---eeecCCCCcccChhhhcccc
Q 039635           86 EFGCDFCDQSHKGY---KYCCDLCNFQIGFACAATLI  119 (579)
Q Consensus        86 ~~~C~~C~~~~~g~---~Y~C~~C~f~lh~~Ca~~~~  119 (579)
                      ...|++|++.+.|.   .|+|+.|++.+|.+|+...+
T Consensus        11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~   47 (53)
T PF00130_consen   11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP   47 (53)
T ss_dssp             TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred             CCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence            45899999999543   39999999999999999854

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=95.19  E-value=0.018  Score=43.12  Aligned_cols=32  Identities=25%  Similarity=0.762  Sum_probs=28.0

Q ss_pred             ccccccc-CCCCCeeecCCC-CcccChhhhcccc
Q 039635           88 GCDFCDQ-SHKGYKYCCDLC-NFQIGFACAATLI  119 (579)
Q Consensus        88 ~C~~C~~-~~~g~~Y~C~~C-~f~lh~~Ca~~~~  119 (579)
                      .|++|++ ++.|.+|+|..| ||+|...|.....
T Consensus         2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~   35 (49)
T cd02334           2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGR   35 (49)
T ss_pred             CCCCCCCCCceeeeEECCCCCCcCchHHHHhCCC
Confidence            6999996 577888999999 9999999988743

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=95.13  E-value=0.0035  Score=68.01  Aligned_cols=91  Identities=22%  Similarity=0.441  Sum_probs=61.1

Q ss_pred             cccccccccCCCCCe---eecCCCCcccChhhhccccc-------------hhc----------c---------c-cCe-
Q 039635           86 EFGCDFCDQSHKGYK---YCCDLCNFQIGFACAATLIE-------------HYR----------V---------Q-EHI-  128 (579)
Q Consensus        86 ~~~C~~C~~~~~g~~---Y~C~~C~f~lh~~Ca~~~~~-------------~~~----------~---------~-~~~-  128 (579)
                      .-+||.||+.++|..   .+|.-|+.+.|..||.+-+-             .++          +         + |++ 
T Consensus       156 PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipNNCsG~r~rr~sa~~l~~~~s~~l~~s~~~p~~p~~~~~pst~  235 (888)
T KOG4236|consen  156 PTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGVRKRRLSAVSLQPSRSNRLNLSPSSPLEPLLPARPSTE  235 (888)
T ss_pred             chHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCccccCCCccc
Confidence            568999999998854   99999999999999987541             000          0         0 000 


Q ss_pred             ----------eec----cC-----------CCCCCEEccCC-ccccccccccc---CCCcEEeCCCCCccCccccCC
Q 039635          129 ----------IEH----FS-----------HRHPLIRLEVD-EEWCRICRNNI---LGPSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       129 ----------I~h----p~-----------H~H~L~~~~~~-~~~C~~C~~~~---~~~~Y~C~~C~f~~H~~C~~~  176 (579)
                                |..    |-           =.|.|...... +..|+.|++.+   ...+..|..|.|..|+.||.-
T Consensus       236 ~~~~~~p~~~~~S~sgrpi~~ek~~~~rvkvPHTf~vHSY~rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~  312 (888)
T KOG4236|consen  236 LGGPREPSSAILSWSGRPIWMEKMLMSRVKVPHTFIVHSYTRPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMK  312 (888)
T ss_pred             ccCCCCCCcccccccCCCchhhhhhhhcccCCeeEEEeeccCchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhh
Confidence                      000    00           01222222222 67899998865   567899999999999999973

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.90  E-value=0.0066  Score=64.19  Aligned_cols=91  Identities=16%  Similarity=0.412  Sum_probs=66.7

Q ss_pred             cccccccccCCCCCe---eecCCCCcccChhhhccccchhccccC--eeeccCCCCCCEEccCC-cccccccccccC---
Q 039635           86 EFGCDFCDQSHKGYK---YCCDLCNFQIGFACAATLIEHYRVQEH--IIEHFSHRHPLIRLEVD-EEWCRICRNNIL---  156 (579)
Q Consensus        86 ~~~C~~C~~~~~g~~---Y~C~~C~f~lh~~Ca~~~~~~~~~~~~--~I~hp~H~H~L~~~~~~-~~~C~~C~~~~~---  156 (579)
                      .-+|+-|..-++|..   ++|..|.|++|..|-....-....+..  .-+-|.-.|.+...... +.+|+-||..+.   
T Consensus        56 PTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtDdpr~kHkf~~~tYssPTFCDhCGsLLyGl~  135 (683)
T KOG0696|consen   56 PTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLI  135 (683)
T ss_pred             CchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCCCCCcccccceeeeecCCCchhhhHHHHHHHHH
Confidence            447999999998865   999999999999998764310000111  11233445777766555 889999998753   


Q ss_pred             CCcEEeCCCCCccCccccCC
Q 039635          157 GPSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       157 ~~~Y~C~~C~f~~H~~C~~~  176 (579)
                      -.+.+|..|+..+|..|...
T Consensus       136 HQGmKC~~C~mNVH~rCv~n  155 (683)
T KOG0696|consen  136 HQGMKCDTCDMNVHHRCVEN  155 (683)
T ss_pred             hcccccccccchHHHHHhhc
Confidence            36789999999999999986

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=94.85  E-value=0.017  Score=41.63  Aligned_cols=32  Identities=19%  Similarity=0.455  Sum_probs=28.4

Q ss_pred             ccccccc-CCCCCeeecCCC-CcccChhhhcccc
Q 039635           88 GCDFCDQ-SHKGYKYCCDLC-NFQIGFACAATLI  119 (579)
Q Consensus        88 ~C~~C~~-~~~g~~Y~C~~C-~f~lh~~Ca~~~~  119 (579)
                      .||+|+. ++.|.+|+|..| ||+|...|.....
T Consensus         2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~   35 (43)
T cd02342           2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMG   35 (43)
T ss_pred             CCCCCCCCcccccceEeCCCCCCccHHHHhhhhc
Confidence            6999996 788999999999 9999999988754

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=94.80  E-value=0.026  Score=42.07  Aligned_cols=41  Identities=29%  Similarity=0.576  Sum_probs=32.7

Q ss_pred             ccccccc-ccCCCcEEeCCCC---CccCccccCCCceeecCCCCCCeeE
Q 039635          147 WCRICRN-NILGPSYGCLPCK---FYIHNSCSELPQQVLHPFHAHHSLK  191 (579)
Q Consensus       147 ~C~~C~~-~~~~~~Y~C~~C~---f~~H~~C~~~P~~i~hp~Hp~H~L~  191 (579)
                      .|++|+. +|.|.+|+|.+|.   |+|.+.|...+.  .|.  +.|+|.
T Consensus         2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~--~H~--~~H~~~   46 (48)
T cd02341           2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE--SHQ--EDHWLV   46 (48)
T ss_pred             CCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC--CCC--CCCcee
Confidence            6999988 8899999999997   999999998664  332  246553

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=94.73  E-value=0.023  Score=42.47  Aligned_cols=35  Identities=23%  Similarity=0.484  Sum_probs=30.2

Q ss_pred             Cccccccc-ccccCCCCCceeecCC-CceecccccCCCccc
Q 039635          378 VPCYACGK-VLIQDQNHPTYGCDPC-RIYLHKTCAQMPRQI  416 (579)
Q Consensus       378 ~~C~aC~~-~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~~~  416 (579)
                      +.|++|+. ||    .|..|+|.+| ||.|.+.|...-+..
T Consensus         1 ~~Cd~C~~~pi----~g~RykC~~C~d~DLC~~Cf~~g~~~   37 (49)
T cd02334           1 AKCNICKEFPI----TGFRYRCLKCFNYDLCQSCFFSGRTS   37 (49)
T ss_pred             CCCCCCCCCCc----eeeeEECCCCCCcCchHHHHhCCCcC
Confidence            47999996 67    7899999999 999999999876644

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=94.63  E-value=0.027  Score=41.94  Aligned_cols=33  Identities=24%  Similarity=0.636  Sum_probs=29.9

Q ss_pred             Cccccccc-ccccCCCCCceeecCCC---ceecccccCCCc
Q 039635          378 VPCYACGK-VLIQDQNHPTYGCDPCR---IYLHKTCAQMPR  414 (579)
Q Consensus       378 ~~C~aC~~-~i~~~~~~~~Y~C~~C~---f~lH~~Ca~lP~  414 (579)
                      ++|++|++ ||    .|..|+|.+|.   |.|.+.|...+.
T Consensus         1 y~Cd~C~~~pI----~G~R~~C~~C~~~d~DlC~~C~~~~~   37 (48)
T cd02341           1 FKCDSCGIEPI----PGTRYHCSECDDGDFDLCQDCVVKGE   37 (48)
T ss_pred             CCCCCCCCCcc----ccceEECCCCCCCCCccCHHHHhCcC
Confidence            47999998 88    79999999996   999999999876

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=94.60  E-value=0.024  Score=40.73  Aligned_cols=31  Identities=19%  Similarity=0.694  Sum_probs=26.0

Q ss_pred             cccccccCCCCCeeecCCC-CcccChhhhcccc
Q 039635           88 GCDFCDQSHKGYKYCCDLC-NFQIGFACAATLI  119 (579)
Q Consensus        88 ~C~~C~~~~~g~~Y~C~~C-~f~lh~~Ca~~~~  119 (579)
                      .|+.|.+.+ |..|+|..| ||++...|...+.
T Consensus         2 ~C~~C~~~~-~~r~~C~~C~dfDLC~~C~~~~~   33 (41)
T cd02337           2 TCNECKHHV-ETRWHCTVCEDYDLCITCYNTKN   33 (41)
T ss_pred             cCCCCCCcC-CCceECCCCcchhhHHHHhCCCC
Confidence            599998844 777999999 8999999988743

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=94.41  E-value=0.031  Score=40.79  Aligned_cols=34  Identities=26%  Similarity=0.763  Sum_probs=29.9

Q ss_pred             cccccccccCCCCCeeecCCC-CcccChhhhcccc
Q 039635           86 EFGCDFCDQSHKGYKYCCDLC-NFQIGFACAATLI  119 (579)
Q Consensus        86 ~~~C~~C~~~~~g~~Y~C~~C-~f~lh~~Ca~~~~  119 (579)
                      ...|+.|++.+.|..|+|..| ||+|...|.....
T Consensus         4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~~   38 (44)
T smart00291        4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGS   38 (44)
T ss_pred             CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCcC
Confidence            467999999888888999999 9999999987643

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=94.27  E-value=0.03  Score=41.56  Aligned_cols=44  Identities=23%  Similarity=0.464  Sum_probs=34.2

Q ss_pred             CcccccccccccCCCCCceeecCC-CceecccccCCCcccccccCCCCe
Q 039635          378 VPCYACGKVLIQDQNHPTYGCDPC-RIYLHKTCAQMPRQIQHVLHRHPL  425 (579)
Q Consensus       378 ~~C~aC~~~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~~~~h~~H~h~L  425 (579)
                      +.|++|.+.+    .+..|+|.+| ||.|..+|..-.++.......||.
T Consensus         1 i~CdgC~~~~----~~~RykCl~C~d~DlC~~Cf~~g~~~~~H~~~Hpm   45 (48)
T cd02343           1 ISCDGCDEIA----PWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEM   45 (48)
T ss_pred             CCCCCCCCcC----CCceEECCCCCCchhHHHHHhCCccCCCCCCCCCc
Confidence            3699999865    6889999999 999999999887765433333554

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.97  E-value=0.025  Score=41.73  Aligned_cols=33  Identities=24%  Similarity=0.689  Sum_probs=25.8

Q ss_pred             ccccccccc-CCCCCeeecCCC-CcccChhhhccc
Q 039635           86 EFGCDFCDQ-SHKGYKYCCDLC-NFQIGFACAATL  118 (579)
Q Consensus        86 ~~~C~~C~~-~~~g~~Y~C~~C-~f~lh~~Ca~~~  118 (579)
                      ...|++|+. .+.|.+|+|..| ||+|...|....
T Consensus         4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g   38 (46)
T PF00569_consen    4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKG   38 (46)
T ss_dssp             SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH-
T ss_pred             CeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCc
Confidence            468999998 777889999999 899999998873

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=93.96  E-value=0.05  Score=40.38  Aligned_cols=32  Identities=25%  Similarity=0.563  Sum_probs=28.5

Q ss_pred             cccccccCCCCCeeecCCC-CcccChhhhcccc
Q 039635           88 GCDFCDQSHKGYKYCCDLC-NFQIGFACAATLI  119 (579)
Q Consensus        88 ~C~~C~~~~~g~~Y~C~~C-~f~lh~~Ca~~~~  119 (579)
                      .|++|.+.+.|.+|+|..| ||+|...|.....
T Consensus         2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g~   34 (48)
T cd02343           2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGV   34 (48)
T ss_pred             CCCCCCCcCCCceEECCCCCCchhHHHHHhCCc
Confidence            5999999887888999999 9999999988754

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=93.95  E-value=0.034  Score=41.63  Aligned_cols=32  Identities=28%  Similarity=0.583  Sum_probs=29.3

Q ss_pred             ccccccc-ccccCCCCCceeecCC-CceecccccCCCc
Q 039635          379 PCYACGK-VLIQDQNHPTYGCDPC-RIYLHKTCAQMPR  414 (579)
Q Consensus       379 ~C~aC~~-~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~  414 (579)
                      .|++|.+ +|    .|..|+|.+| ||.|...|....+
T Consensus         2 ~C~~C~~~~i----~g~R~~C~~C~dydLC~~Cf~~~~   35 (49)
T cd02345           2 SCSACRKQDI----SGIRFPCQVCRDYSLCLGCYTKGR   35 (49)
T ss_pred             cCCCCCCCCc----eEeeEECCCCCCcCchHHHHhCCC
Confidence            6999999 88    6899999999 9999999999775

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>cd00029 C1 Protein kinase C conserved region 1 (C1)

Probab=93.64  E-value=0.049  Score=40.31  Aligned_cols=32  Identities=31%  Similarity=0.837  Sum_probs=28.5

Q ss_pred             cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          145 EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       145 ~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      +..|+.|++.+.+   .+|+|..|++.+|+.|+..
T Consensus        11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~   45 (50)
T cd00029          11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK   45 (50)
T ss_pred             CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence            5689999998864   8999999999999999974

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=93.62  E-value=0.0073  Score=65.66  Aligned_cols=106  Identities=24%  Similarity=0.388  Sum_probs=68.6

Q ss_pred             CcCCcceeecCC--CCCCccccCCCCCC---cEEcCCCCCCCccccccccCC-Ccc--------E-eecCCCCC------
Q 039635           10 HVHQHPFSCGSR--PERCFACLGEISGN---FYICGHCDSDSPLFHQSCAEL-PQL--------L-QTNFHPHC------   68 (579)
Q Consensus        10 p~H~H~l~~~~~--~~~C~~C~~~~~~~---~Y~C~~C~~~~~~~Hk~C~~~-p~~--------I-~hp~Hp~H------   68 (579)
                      .+++|.|..-+.  +..|+.|.+-.+|.   +-.|.-|++   .+||.|+.. |..        . .-+.-|.+      
T Consensus       142 ~i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCgl---NyHKRCa~kipNNCsG~r~rr~sa~~l~~~~s~~l~~  218 (888)
T KOG4236|consen  142 QIRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGL---NYHKRCAFKIPNNCSGVRKRRLSAVSLQPSRSNRLNL  218 (888)
T ss_pred             eeecceeeeecccCchHHHHHHHHHHHHHHccccccCCCC---cHhhhhhhcCCCCCCcccccCCCCCCCCCCCcccccc
Confidence            468999988766  88999996544332   799999999   999999962 111        0 01111222      


Q ss_pred             ----ceE---Eeeccc------ccc------------------------------ccccccccccccccCCCCCe---ee
Q 039635           69 ----RFR---FKEESD------VFS------------------------------FKRTLEFGCDFCDQSHKGYK---YC  102 (579)
Q Consensus        69 ----~L~---l~~~~~------~~~------------------------------~~~~~~~~C~~C~~~~~g~~---Y~  102 (579)
                          ||+   ....++      .|+                              .+.. .-.|-.|++-+.|.+   .+
T Consensus       219 s~~~p~~p~~~~~pst~~~~~~~p~~~~~S~sgrpi~~ek~~~~rvkvPHTf~vHSY~r-pTVCq~CkkLLkGL~rQGlq  297 (888)
T KOG4236|consen  219 SPSSPLEPLLPARPSTELGGPREPSSAILSWSGRPIWMEKMLMSRVKVPHTFIVHSYTR-PTVCQYCKKLLKGLFRQGLQ  297 (888)
T ss_pred             CCCCCCCccccCCCcccccCCCCCCcccccccCCCchhhhhhhhcccCCeeEEEeeccC-chHHHHHHHHHHHHHhcCcc
Confidence                111   100000      000                              1121 346999999887754   99


Q ss_pred             cCCCCcccChhhhcccc
Q 039635          103 CDLCNFQIGFACAATLI  119 (579)
Q Consensus       103 C~~C~f~lh~~Ca~~~~  119 (579)
                      |..|.|+.|.+||...+
T Consensus       298 CkDCk~NcHkrCa~~v~  314 (888)
T KOG4236|consen  298 CKDCKFNCHKRCAMKVP  314 (888)
T ss_pred             cccCCcchhhhhhhhcc
Confidence            99999999999999866

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.61  E-value=0.033  Score=41.08  Aligned_cols=33  Identities=24%  Similarity=0.520  Sum_probs=25.9

Q ss_pred             CCccccccc-ccccCCCCCceeecCC-CceecccccCCC
Q 039635          377 DVPCYACGK-VLIQDQNHPTYGCDPC-RIYLHKTCAQMP  413 (579)
Q Consensus       377 ~~~C~aC~~-~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP  413 (579)
                      .+.|++|+. +|    .|..|+|.+| ||.|...|....
T Consensus         4 ~~~C~~C~~~~i----~g~Ry~C~~C~d~dLC~~C~~~g   38 (46)
T PF00569_consen    4 GYTCDGCGTDPI----IGVRYHCLVCPDYDLCEDCFSKG   38 (46)
T ss_dssp             SCE-SSS-SSSE----ESSEEEESSSSS-EEEHHHHHH-
T ss_pred             CeECcCCCCCcC----cCCeEECCCCCCCchhhHHHhCc
Confidence            588999998 77    6899999999 899999998654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=93.54  E-value=0.054  Score=40.55  Aligned_cols=32  Identities=19%  Similarity=0.745  Sum_probs=28.6

Q ss_pred             ccccccc-CCCCCeeecCCC-CcccChhhhcccc
Q 039635           88 GCDFCDQ-SHKGYKYCCDLC-NFQIGFACAATLI  119 (579)
Q Consensus        88 ~C~~C~~-~~~g~~Y~C~~C-~f~lh~~Ca~~~~  119 (579)
                      .|++|++ .+.|..|+|..| ||+|...|.....
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~   35 (49)
T cd02345           2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGR   35 (49)
T ss_pred             cCCCCCCCCceEeeEECCCCCCcCchHHHHhCCC
Confidence            5999998 888888999999 9999999988754

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=93.54  E-value=0.048  Score=39.81  Aligned_cols=34  Identities=26%  Similarity=0.560  Sum_probs=30.3

Q ss_pred             CCcccccccccccCCCCCceeecCC-CceecccccCCCc
Q 039635          377 DVPCYACGKVLIQDQNHPTYGCDPC-RIYLHKTCAQMPR  414 (579)
Q Consensus       377 ~~~C~aC~~~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~  414 (579)
                      .+.|++|+.+|    .+..|+|.+| ||.|.+.|...++
T Consensus         4 ~~~C~~C~~~i----~g~ry~C~~C~d~dlC~~Cf~~~~   38 (44)
T smart00291        4 SYSCDTCGKPI----VGVRYHCLVCPDYDLCQSCFAKGS   38 (44)
T ss_pred             CcCCCCCCCCC----cCCEEECCCCCCccchHHHHhCcC
Confidence            57899999987    7899999999 9999999987654

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=93.02  E-value=0.078  Score=39.65  Aligned_cols=34  Identities=41%  Similarity=0.912  Sum_probs=29.4

Q ss_pred             eecccccccccCceEEeCCC-CcccccCCccCCCc
Q 039635          201 YCDACDSMIMSAKHYRCDEC-DFDLHLDCISVKPK  234 (579)
Q Consensus       201 ~C~~C~~~~~~~~~Y~C~~C-~f~lh~~Ca~~p~~  234 (579)
                      .|+.|++.+..+..|+|..| ||+|...|......
T Consensus         2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~   36 (49)
T cd02335           2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAE   36 (49)
T ss_pred             CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCC
Confidence            59999998876689999999 89999999876643

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=92.93  E-value=0.083  Score=54.55  Aligned_cols=49  Identities=24%  Similarity=0.500  Sum_probs=38.9

Q ss_pred             CCCCcccccccccccCCCCCceeecCC-CceecccccCCCcccccccCCCCeE
Q 039635          375 NDDVPCYACGKVLIQDQNHPTYGCDPC-RIYLHKTCAQMPRQIQHVLHRHPLT  426 (579)
Q Consensus       375 ~~~~~C~aC~~~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~~~~h~~H~h~L~  426 (579)
                      ...+.|+||++.-.   .+..|+|+.| ||.|..+|-+---.+--..+.||+-
T Consensus         6 He~v~CdgC~k~~~---t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmq   55 (381)
T KOG1280|consen    6 HEGVSCDGCGKTAF---TFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQ   55 (381)
T ss_pred             cCCceeccccccce---eeeeeEeeeecchhHHHHHhhcCCCCcccCCCCcee
Confidence            34789999999765   8889999999 9999999998775554444457653

>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)

Probab=92.50  E-value=0.056  Score=39.65  Aligned_cols=32  Identities=34%  Similarity=0.753  Sum_probs=28.3

Q ss_pred             cccccccccccCC--CcEEeCCCCCccCccccCC
Q 039635          145 EEWCRICRNNILG--PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       145 ~~~C~~C~~~~~~--~~Y~C~~C~f~~H~~C~~~  176 (579)
                      +..|.+|++.+.+  .+|+|..|++.+|+.|+..
T Consensus        11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~   44 (49)
T smart00109       11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK   44 (49)
T ss_pred             CCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence            6789999999865  4899999999999999974

Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=91.86  E-value=0.11  Score=37.44  Aligned_cols=38  Identities=24%  Similarity=0.504  Sum_probs=29.9

Q ss_pred             CcccccccccccCCCCCceeecCC-CceecccccCCCcccccccCCCCeE
Q 039635          378 VPCYACGKVLIQDQNHPTYGCDPC-RIYLHKTCAQMPRQIQHVLHRHPLT  426 (579)
Q Consensus       378 ~~C~aC~~~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~~~~h~~H~h~L~  426 (579)
                      +.|++|.. +    .+..|.|..| ||.|...|...      +.|+|.|.
T Consensus         1 y~C~~C~~-~----~~~r~~C~~C~dfDLC~~C~~~------~~H~H~~~   39 (41)
T cd02337           1 YTCNECKH-H----VETRWHCTVCEDYDLCITCYNT------KNHPHKME   39 (41)
T ss_pred             CcCCCCCC-c----CCCceECCCCcchhhHHHHhCC------CCCCcccc
Confidence            36999987 3    4699999999 99999999877      34566553

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=91.35  E-value=0.14  Score=52.87  Aligned_cols=48  Identities=21%  Similarity=0.578  Sum_probs=36.0

Q ss_pred             cccccccccCCCCCe-eecCCC-CcccChhhhccccchhccccCeeeccCCCCCCEEc
Q 039635           86 EFGCDFCDQSHKGYK-YCCDLC-NFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRL  141 (579)
Q Consensus        86 ~~~C~~C~~~~~g~~-Y~C~~C-~f~lh~~Ca~~~~~~~~~~~~~I~hp~H~H~L~~~  141 (579)
                      +..|++|++...... |+|-.| ||+|+.+|.....        ++.--.++||+...
T Consensus         8 ~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~--------tt~~H~~dHPmqci   57 (381)
T KOG1280|consen    8 GVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGA--------TTPIHDEDHPMQCI   57 (381)
T ss_pred             CceeccccccceeeeeeEeeeecchhHHHHHhhcCC--------CCcccCCCCceeEE
Confidence            578999999876544 999999 9999999998854        22211467887743

>cd00029 C1 Protein kinase C conserved region 1 (C1)

Probab=90.68  E-value=0.18  Score=37.25  Aligned_cols=33  Identities=30%  Similarity=0.649  Sum_probs=27.9

Q ss_pred             CCCCCccccCCCCC---CcEEcCCCCCCCccccccccCC
Q 039635           21 RPERCFACLGEISG---NFYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus        21 ~~~~C~~C~~~~~~---~~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      ++..|..|.+.+++   .+|.|..|++   ..|++|+..
T Consensus        10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~---~~H~~C~~~   45 (50)
T cd00029          10 KPTFCDVCRKSIWGLFKQGLRCSWCKV---KCHKKCADK   45 (50)
T ss_pred             CCCChhhcchhhhccccceeEcCCCCC---chhhhhhcc
Confidence            36789999776664   5899999999   999999975

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).

>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)

Probab=89.90  E-value=0.18  Score=36.88  Aligned_cols=34  Identities=32%  Similarity=0.733  Sum_probs=28.4

Q ss_pred             CCCCCCccccCCCCC--CcEEcCCCCCCCccccccccCC
Q 039635           20 SRPERCFACLGEISG--NFYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus        20 ~~~~~C~~C~~~~~~--~~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      .++..|..|.+.+++  .+|.|..|++   ..|+.|++.
T Consensus         9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~---~~H~~C~~~   44 (49)
T smart00109        9 KKPTKCCVCRKSIWGSFQGLRCSWCKV---KCHKKCAEK   44 (49)
T ss_pred             CCCCCccccccccCcCCCCcCCCCCCc---hHHHHHHhh
Confidence            347789999777765  3899999999   999999975

Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=89.24  E-value=0.31  Score=54.60  Aligned_cols=122  Identities=25%  Similarity=0.546  Sum_probs=78.1

Q ss_pred             ccccccccc-c--CCCcEEeC--CCCCccCccccCCCceeecCCCCCCeeEEecccCCceeecccccccccCceEEeCCC
Q 039635          146 EWCRICRNN-I--LGPSYGCL--PCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDEC  220 (579)
Q Consensus       146 ~~C~~C~~~-~--~~~~Y~C~--~C~f~~H~~C~~~P~~i~hp~Hp~H~L~L~~~~~~~~~C~~C~~~~~~~~~Y~C~~C  220 (579)
                      +-|-+|... +  +.+.-.|.  .|...+|+.|..    |         .+.   ..+.|+|.-|...-+ ....+|.-|
T Consensus         6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG----I---------vqV---PtGpWfCrKCesqer-aarvrCeLC   68 (900)
T KOG0956|consen    6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG----I---------VQV---PTGPWFCRKCESQER-AARVRCELC   68 (900)
T ss_pred             cceeeecCcCCCccCceeeecCCCceeeeehhcce----e---------Eec---CCCchhhhhhhhhhh-hccceeecc
Confidence            456677443 3  34445586  599999999985    3         222   246788999987654 357899888


Q ss_pred             Cc------------ccccCCccCCCccc-cCCc---ceeEEEeecCCCccccccCcCCCCC-C---ceeeecc--CCCce
Q 039635          221 DF------------DLHLDCISVKPKIR-YQGQ---EHLLVLMKSGSGTTTCQACSFDTKP-G---AFFVRCV--ECDFK  278 (579)
Q Consensus       221 ~f------------~lh~~Ca~~p~~~~-~~~H---~H~L~l~~~~~~~~~C~~C~~~~~~-~---~y~Y~C~--~C~f~  278 (579)
                      .+            ..|+.||..-+.+. ..-|   +--|.+++..-..++|.+|...+.. .   .-.+.|.  .|.-.
T Consensus        69 P~kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~Ckqa  148 (900)
T KOG0956|consen   69 PHKDGALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQA  148 (900)
T ss_pred             cCcccceecccCCCceEEEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhh
Confidence            65            37999998766554 2222   2333344443356899999876432 1   2223354  56788


Q ss_pred             ecCCCC
Q 039635          279 FHVQCG  284 (579)
Q Consensus       279 lH~~Ca  284 (579)
                      ||+.||
T Consensus       149 FHVTCA  154 (900)
T KOG0956|consen  149 FHVTCA  154 (900)
T ss_pred             hhhhHh
Confidence            999999

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=86.95  E-value=0.31  Score=52.64  Aligned_cols=137  Identities=23%  Similarity=0.427  Sum_probs=83.7

Q ss_pred             cccccccccC-CC--CCeeecCCCCcccChhhhccccchhccccCeeeccCCCCCCEEccCCcccccccccccCCCcEEe
Q 039635           86 EFGCDFCDQS-HK--GYKYCCDLCNFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLEVDEEWCRICRNNILGPSYGC  162 (579)
Q Consensus        86 ~~~C~~C~~~-~~--g~~Y~C~~C~f~lh~~Ca~~~~~~~~~~~~~I~hp~H~H~L~~~~~~~~~C~~C~~~~~~~~Y~C  162 (579)
                      ...|.+|--. +.  +....|..|+++||+.|..-..      .-.|...+-+..     ..+++|.+|...+..+  +|
T Consensus       119 ~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~d------n~si~s~~s~~s-----tepWfCeaC~~Gvs~P--~C  185 (707)
T KOG0957|consen  119 AVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLD------NVSIPSGSSDCS-----TEPWFCEACLYGVSLP--HC  185 (707)
T ss_pred             ceEEEEeecCccccccceeeccccCceeccccccccc------ccccCCCCccCC-----CCchhhhhHhcCCCCC--cc
Confidence            4589999643 32  3459999999999999988643      111211111100     0178999997765432  45


Q ss_pred             CCC------------CCccCccccCCCceeec-CCCCCCeeEEec---ccCCceeeccccccccc--CceEEeC--CCCc
Q 039635          163 LPC------------KFYIHNSCSELPQQVLH-PFHAHHSLKLQN---TFRGLLYCDACDSMIMS--AKHYRCD--ECDF  222 (579)
Q Consensus       163 ~~C------------~f~~H~~C~~~P~~i~h-p~Hp~H~L~L~~---~~~~~~~C~~C~~~~~~--~~~Y~C~--~C~f  222 (579)
                      +-|            +-++|..||..-+.+.. ..|.--+.+|..   ..+|.+.|.+|...+..  |..-+|.  .|.-
T Consensus       186 ElCPn~~GifKetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARtGvci~CdaGMCk~  265 (707)
T KOG0957|consen  186 ELCPNRFGIFKETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFARTGVCIRCDAGMCKE  265 (707)
T ss_pred             ccCCCcCCcccccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhhcceeeeccchhhhh
Confidence            544            23689999976333322 122222334422   23567789999988753  3456776  5888


Q ss_pred             ccccCCccCCCcc
Q 039635          223 DLHLDCISVKPKI  235 (579)
Q Consensus       223 ~lh~~Ca~~p~~~  235 (579)
                      ++|+.||...-.+
T Consensus       266 YfHVTCAQk~GlL  278 (707)
T KOG0957|consen  266 YFHVTCAQKLGLL  278 (707)
T ss_pred             hhhhhHHhhhcce
Confidence            9999999775433

>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]

Probab=86.82  E-value=0.38  Score=49.53  Aligned_cols=42  Identities=26%  Similarity=0.606  Sum_probs=34.4

Q ss_pred             cccccccc-ccCCCcEEeCCC-CCccCccccCCCceeecCCCCCCeeEE
Q 039635          146 EWCRICRN-NILGPSYGCLPC-KFYIHNSCSELPQQVLHPFHAHHSLKL  192 (579)
Q Consensus       146 ~~C~~C~~-~~~~~~Y~C~~C-~f~~H~~C~~~P~~i~hp~Hp~H~L~L  192 (579)
                      ..||.|+. +|.|.+|+|.+| |++|.+.|-.-.     +.|.+|.+.-
T Consensus       153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~-----~~h~~H~~lR  196 (278)
T KOG4582|consen  153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN-----EHHAAHAMLR  196 (278)
T ss_pred             ccCCCccCCccccceeeecCCCccchhHHhhcCC-----CCCcccceee
Confidence            68999999 889999999999 999999998632     4555666543

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=86.15  E-value=0.43  Score=51.53  Aligned_cols=127  Identities=24%  Similarity=0.475  Sum_probs=79.4

Q ss_pred             CCccccC---CCCCCcEEcCCCCCCCccccccccCCCccEeecCCCCCceEEeeccccccccccccccccccccCCCCCe
Q 039635           24 RCFACLG---EISGNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYK  100 (579)
Q Consensus        24 ~C~~C~~---~~~~~~Y~C~~C~~~~~~~Hk~C~~~p~~I~hp~Hp~H~L~l~~~~~~~~~~~~~~~~C~~C~~~~~g~~  100 (579)
                      .|-+|.+   .+.+..-.|..|++   .+|.+|..-......++=..            ..... .|+|.+|+--+..  
T Consensus       121 iCcVClg~rs~da~ei~qCd~CGi---~VHEgCYGv~dn~si~s~~s------------~~ste-pWfCeaC~~Gvs~--  182 (707)
T KOG0957|consen  121 ICCVCLGQRSVDAGEILQCDKCGI---NVHEGCYGVLDNVSIPSGSS------------DCSTE-PWFCEACLYGVSL--  182 (707)
T ss_pred             EEEEeecCccccccceeeccccCc---eecccccccccccccCCCCc------------cCCCC-chhhhhHhcCCCC--
Confidence            6888843   33555799999999   99999996443333332210            00112 7999999875521  


Q ss_pred             eecCCC-C-----------cccChhhhccccchhccccCeeecc-CCC-CCCEEccCC-----ccccccccccc---CCC
Q 039635          101 YCCDLC-N-----------FQIGFACAATLIEHYRVQEHIIEHF-SHR-HPLIRLEVD-----EEWCRICRNNI---LGP  158 (579)
Q Consensus       101 Y~C~~C-~-----------f~lh~~Ca~~~~~~~~~~~~~I~hp-~H~-H~L~~~~~~-----~~~C~~C~~~~---~~~  158 (579)
                      =+|+.| |           -.+|..||...+        -+... .|. -+.++....     ...|.+|...+   .|.
T Consensus       183 P~CElCPn~~GifKetDigrWvH~iCALYvp--------GVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARtGv  254 (707)
T KOG0957|consen  183 PHCELCPNRFGIFKETDIGRWVHAICALYVP--------GVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFARTGV  254 (707)
T ss_pred             CccccCCCcCCcccccchhhHHHHHHHhhcC--------ccccccccccccccHHHhhhhhhccchhccccchhhhhcce
Confidence            567777 2           238999999854        12211 222 222332211     67899998887   455


Q ss_pred             cEEeCC--CCCccCccccCC
Q 039635          159 SYGCLP--CKFYIHNSCSEL  176 (579)
Q Consensus       159 ~Y~C~~--C~f~~H~~C~~~  176 (579)
                      .-+|..  |.-+||..||+-
T Consensus       255 ci~CdaGMCk~YfHVTCAQk  274 (707)
T KOG0957|consen  255 CIRCDAGMCKEYFHVTCAQK  274 (707)
T ss_pred             eeeccchhhhhhhhhhHHhh
Confidence            556653  778999999973

>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]

Probab=85.40  E-value=0.47  Score=48.86  Aligned_cols=32  Identities=34%  Similarity=0.744  Sum_probs=29.3

Q ss_pred             Cccccccc-ccccCCCCCceeecCC-CceecccccCCC
Q 039635          378 VPCYACGK-VLIQDQNHPTYGCDPC-RIYLHKTCAQMP  413 (579)
Q Consensus       378 ~~C~aC~~-~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP  413 (579)
                      ..|+.|+. +|    .|..|+|.+| ||.|.+.|-.-.
T Consensus       153 v~CD~C~~~~I----vG~RyKC~~C~dYDLCe~Ce~~~  186 (278)
T KOG4582|consen  153 VPCDNCGKPGI----VGARYKCTVCPDYDLCERCEAGN  186 (278)
T ss_pred             ccCCCccCCcc----ccceeeecCCCccchhHHhhcCC
Confidence            79999999 77    8999999999 999999997664

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.35  E-value=0.61  Score=34.70  Aligned_cols=33  Identities=27%  Similarity=0.807  Sum_probs=23.9

Q ss_pred             ccccCcCCCCCCceeeeccCCCceecCCCCCCCCCC
Q 039635          255 TCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPP  290 (579)
Q Consensus       255 ~C~~C~~~~~~~~y~Y~C~~C~f~lH~~Ca~~~lP~  290 (579)
                      .|.+|+......... .|..|+..+|..|+  .++.
T Consensus         1 ~C~vC~~~~~~~~~i-~C~~C~~~~H~~C~--~~~~   33 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMI-QCDSCNRWYHQECV--GPPE   33 (51)
T ss_dssp             EBTTTTSSCTTSSEE-EBSTTSCEEETTTS--TSSH
T ss_pred             eCcCCCCcCCCCCeE-EcCCCChhhCcccC--CCCh
Confidence            478898854444333 59999999999999  5443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]

Probab=80.78  E-value=0.59  Score=47.12  Aligned_cols=82  Identities=15%  Similarity=0.224  Sum_probs=58.9

Q ss_pred             CceeeeeccCceeecccCCCCccccccCCCCCceeeecCCCCCC-CCcccccccccccCCcceEEEcCCCCCcccccccc
Q 039635          487 ASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGN-YGTQICDVCEEERDQQERVYYCEECDYIADFMCVI  565 (579)
Q Consensus       487 ~~~~~C~~C~f~Lh~~Ca~lp~~~~~~~~~~H~L~l~~~~~~~~-~~~~~C~~Ce~~~~~~~~~y~C~~C~~~lh~~C~~  565 (579)
                      .+...|..|...-|..|..+|..++-       |.=.|   ++. ..-..|.||.+..- ..-+..||.||-..|..||-
T Consensus       277 ~S~I~C~~C~~~~HP~Ci~M~~elv~-------~~KTY---~W~C~~C~lC~IC~~P~~-E~E~~FCD~CDRG~HT~CVG  345 (381)
T KOG1512|consen  277 NSWIVCKPCATRPHPYCVAMIPELVG-------QYKTY---FWKCSSCELCRICLGPVI-ESEHLFCDVCDRGPHTLCVG  345 (381)
T ss_pred             ccceeecccccCCCCcchhcCHHHHh-------HHhhc---chhhcccHhhhccCCccc-chheeccccccCCCCccccc
Confidence            35677899999999999999877721       11111   232 12224899987543 33456799999999999997


Q ss_pred             cccccccEEeeecC
Q 039635          566 EVTKPTDYFLEKSY  579 (579)
Q Consensus       566 ~~~~p~~~~~~~~~  579 (579)
                      -..-|++-|+++-|
T Consensus       346 L~~lP~G~WICD~~  359 (381)
T KOG1512|consen  346 LQDLPRGEWICDMR  359 (381)
T ss_pred             cccccCccchhhhH
Confidence            78899999998743

>smart00249 PHD PHD zinc finger

Probab=80.09  E-value=2.3  Score=30.18  Aligned_cols=34  Identities=32%  Similarity=0.615  Sum_probs=28.4

Q ss_pred             cccccccccccCCCCCceeecCCCceecccccCCCcc
Q 039635          379 PCYACGKVLIQDQNHPTYGCDPCRIYLHKTCAQMPRQ  415 (579)
Q Consensus       379 ~C~aC~~~i~~~~~~~~Y~C~~C~f~lH~~Ca~lP~~  415 (579)
                      .|..|++...   .+....|..|+-..|..|+.++..
T Consensus         1 ~C~~C~~~~~---~~~~i~C~~C~~~~H~~C~~~~~~   34 (47)
T smart00249        1 YCSVCGKPDD---GGELLQCDGCDRWYHQTCLGPPLL   34 (47)
T ss_pred             CcccCCCcCC---CCCEEECCCCCchhhhhhCCCccc
Confidence            4778887653   778899999999999999998876

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	579
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	6e-13
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	2e-11
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	3e-07
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	8e-07
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	1e-06
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	2e-05
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	3e-04
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	5e-04

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 63.8 bits (155), Expect = 6e-13
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 162 CLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECD 221
               +        + P++V H  H  H L+L  T   +  CD C+    +   Y CDECD
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELEL--TRVQVYTCDKCEEEG-TIWSYHCDECD 68

Query: 222 FDLHLDCISVKPKIR 236
           FDLH  C   +    
Sbjct: 69  FDLHAKCALNEDTKE 83

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 59.2 bits (143), Expect = 2e-11
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 398 CDPCRIYLHKTCAQMPRQIQHVLHR-HPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCD 456
                    +     P++++HVLH  H L +T        TCD C++      Y CD CD
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQV---YTCDKCEEEGTIWSYHCDECD 68

Query: 457 FVLDFDCATLQSRVLNHTAK 476
           F L   CA  +    +  + 
Sbjct: 69  FDLHAKCALNEDTKESGPSS 88

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 14/79 (17%), Positives = 20/79 (25%), Gaps = 9/79 (11%)

Query: 103 CDLCNFQIGFACAATLIEHYRVQEHIIEHFSHR-HPLIRLEVDEEWCRICRNNILGPSYG 161
                 +          +        ++H  H  H L    V    C  C       SY 
Sbjct: 12  LKEIEAKYDEIAKDWPKK--------VKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYH 63

Query: 162 CLPCKFYIHNSCSELPQQV 180
           C  C F +H  C+      
Sbjct: 64  CDECDFDLHAKCALNEDTK 82

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 214 HYRCDECDFDLHLDCISVKPKIRYQG-QEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRC 272
             R  E +            K+++   +EH L L +      TC  C  + +   +   C
Sbjct: 9   EERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR--VQVYTCDKC--EEEGTIWSYHC 64

Query: 273 VECDFKFHVQCGPASPPPIVEH 294
            ECDF  H +C           
Sbjct: 65  DECDFDLHAKCALNEDTKESGP 86

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 492 CLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYY 551
             +       +    P  ++H+ H +H L L             CD CEEE       Y+
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELELT------RVQVYTCDKCEEEGT--IWSYH 63

Query: 552 CEECDYIADFMCVI 565
           C+ECD+     C +
Sbjct: 64  CDECDFDLHAKCAL 77

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 14/78 (17%)

Query: 271 RCVECDFKFHVQCGPASPPPIVEH-IHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDP 329
           R  E + K+         P  V+H +H  H L LT         +  ++ CD C+EE   
Sbjct: 11  RLKEIEAKYDEIA--KDWPKKVKHVLHEEHELELT---------RVQVYTCDKCEEEGT- 58

Query: 330 QNPFCCCIECGYYIHWRC 347
                 C EC + +H +C
Sbjct: 59  -IWSYHCDECDFDLHAKC 75

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 12/77 (15%)

Query: 39  CGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKG 98
               ++    + +   + P+ ++   H                     + CD C++    
Sbjct: 12  LKEIEAK---YDEIAKDWPKKVKHVLHEEHELELTRVQ---------VYTCDKCEEEGTI 59

Query: 99  YKYCCDLCNFQIGFACA 115
           + Y CD C+F +   CA
Sbjct: 60  WSYHCDECDFDLHAKCA 76

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 34/227 (14%), Positives = 59/227 (25%), Gaps = 28/227 (12%)

Query: 147 WCRICRNNILG---PSYGCLPCKFYIHNSCSEL---------------PQQVLHPFHAHH 188
           +C  C + I G     + C  C F +H  C E                  +  H F  H 
Sbjct: 50  FCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIH- 108

Query: 189 SLKLQNTFRGLLYCDACDSMIMSAKH--YRCDECDFDLHLDCISVKPKIRYQGQEHLLVL 246
                 T+    +CD C S++    H   +CD C  ++H  C+   P             
Sbjct: 109 ------TYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPS-LCGTDHTERRG 161

Query: 247 MKSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLP 306
                     +      +     V                 P P  E      ++  +L 
Sbjct: 162 RIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLN 221

Query: 307 TDSFVKDKFDLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVIEVP 353
            +     +F L   D  +        +       +       + E+ 
Sbjct: 222 PEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	579
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	99.47
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	99.46
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	97.16
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	96.85
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	96.22
1ptq_A	50	Protein kinase C delta type; phosphotransferase; 1	95.55
2enz_A	65	NPKC-theta, protein kinase C theta type; zinc bind	95.33
1kbe_A	49	Kinase suppressor of RAS; KSR, cysteine-rich domai	95.32
1ptq_A	50	Protein kinase C delta type; phosphotransferase; 1	95.26
1faq_A	52	RAF-1; transferase, serine/threonine-protein kinas	95.18
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	95.15
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	95.07
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	95.07
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	95.03
1rfh_A	59	RAS association (ralgds/AF-6) domain family 5; zin	94.85
2db6_A	74	SH3 and cysteine rich domain 3; STAC3, C1 domain,	94.8
2fnf_X	72	Putative RAS effector NORE1; zinc, signal transduc	94.78
1kbe_A	49	Kinase suppressor of RAS; KSR, cysteine-rich domai	94.77
2eli_A	85	Protein kinase C alpha type; PKC-alpha, PKC-A, str	94.69
3uej_A	65	NPKC-delta, protein kinase C delta type; proteine	94.67
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	94.54
3uej_A	65	NPKC-delta, protein kinase C delta type; proteine	94.47
1y8f_A	66	UNC-13 homolog A, MUNC13-1; cysteine-rich domain,	94.46
2yuu_A	83	NPKC-delta, protein kinase C delta type; metal bin	94.17
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	94.16
1y8f_A	66	UNC-13 homolog A, MUNC13-1; cysteine-rich domain,	94.1
2enn_A	77	NPKC-theta, protein kinase C theta type; zinc bind	93.87
2enz_A	65	NPKC-theta, protein kinase C theta type; zinc bind	93.67
2db6_A	74	SH3 and cysteine rich domain 3; STAC3, C1 domain,	93.56
2eli_A	85	Protein kinase C alpha type; PKC-alpha, PKC-A, str	93.53
1faq_A	52	RAF-1; transferase, serine/threonine-protein kinas	93.48
2enn_A	77	NPKC-theta, protein kinase C theta type; zinc bind	93.44
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	93.38
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	93.17
1rfh_A	59	RAS association (ralgds/AF-6) domain family 5; zin	93.06
2fnf_X	72	Putative RAS effector NORE1; zinc, signal transduc	92.92
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	92.84
2yuu_A	83	NPKC-delta, protein kinase C delta type; metal bin	92.29
4b6d_A	61	RAC GTPase-activating protein 1; signaling protein	91.83
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	90.87
2row_A	84	RHO-associated protein kinase 2; ATP-binding, coil	90.65
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	89.77
4b6d_A	61	RAC GTPase-activating protein 1; signaling protein	88.95
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	88.14
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	87.85
2row_A	84	RHO-associated protein kinase 2; ATP-binding, coil	87.7
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	86.47
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	84.63
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	83.24
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	82.6
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	81.59
1r79_A	84	Diacylglycerol kinase, delta; C1 domain, cystein-r	81.44
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	81.09

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=99.47  E-value=2.5e-14  Score=119.89  Aligned_cols=63  Identities=19%  Similarity=0.527  Sum_probs=57.5

Q ss_pred             cccccccCCCccEeecCCCCCceEEeeccccccccccccccccccccCCCCCeeecCCCCcccChhhhcccc
Q 039635           48 LFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFACAATLI  119 (579)
Q Consensus        48 ~~Hk~C~~~p~~I~hp~Hp~H~L~l~~~~~~~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lh~~Ca~~~~  119 (579)
                      .+|++|+++|++|+||+||+|||+|...        . .+.|++|++.+.+..|+|+.|||+||..||..|+
T Consensus        18 ~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~--------~-~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~   80 (89)
T 1v5n_A           18 KYDEIAKDWPKKVKHVLHEEHELELTRV--------Q-VYTCDKCEEEGTIWSYHCDECDFDLHAKCALNED   80 (89)
T ss_dssp             HHHHHTSSSCSEECCSTTTTSCEEEECC--------S-SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred             HHhHHHHcCCceecCCCCCCCccEEeeC--------C-CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCC
Confidence            7999999999999999999999999751        1 4689999999988889999999999999999876

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=99.46  E-value=5.8e-15  Score=123.70  Aligned_cols=66  Identities=32%  Similarity=0.597  Sum_probs=59.5

Q ss_pred             CCceecccccCCCcccccccC-CCCeEEEecCCCCceecccccccccceEEeecCCCeeeecccCccccc
Q 039635          401 CRIYLHKTCAQMPRQIQHVLH-RHPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCDFVLDFDCATLQSR  469 (579)
Q Consensus       401 C~f~lH~~Ca~lP~~~~h~~H-~h~L~l~~~~~~~~~~C~~C~~~~~g~~Y~C~~c~~~lh~~Ca~~~~~  469 (579)
                      ++.+||+.||+||++|+|++| .|||+|....   .++|++|++.+.||+|.|..|+|.||++||++++.
T Consensus        15 ~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~---~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~~   81 (89)
T 1v5n_A           15 IEAKYDEIAKDWPKKVKHVLHEEHELELTRVQ---VYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDT   81 (89)
T ss_dssp             HHHHHHHHTSSSCSEECCSTTTTSCEEEECCS---SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSSC
T ss_pred             HHHHHhHHHHcCCceecCCCCCCCccEEeeCC---CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCCc
Confidence            356999999999999999999 5999998653   58999999999999999999999999999998654

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=97.16  E-value=0.00013  Score=82.55  Aligned_cols=91  Identities=16%  Similarity=0.427  Sum_probs=33.3

Q ss_pred             cccccccccCCCCCe---eecCCCCcccChhhhccccchhc-cccCee-eccCCCCCCEEccCC-cccccccccccCC--
Q 039635           86 EFGCDFCDQSHKGYK---YCCDLCNFQIGFACAATLIEHYR-VQEHII-EHFSHRHPLIRLEVD-EEWCRICRNNILG--  157 (579)
Q Consensus        86 ~~~C~~C~~~~~g~~---Y~C~~C~f~lh~~Ca~~~~~~~~-~~~~~I-~hp~H~H~L~~~~~~-~~~C~~C~~~~~~--  157 (579)
                      .-.|+.|+..++|..   |+|..|++.+|..|....+.... .....- .-+.-.|.+...... ...|+.|++.+.|  
T Consensus        48 p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~~~l~g~~  127 (674)
T 3pfq_A           48 PTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLI  127 (674)
T ss_dssp             ------------------------------------------------------CCCCCEECCSSCCCCSSSCSCCBBSS
T ss_pred             CCccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCccccccchhh
Confidence            447999999998754   99999999999999887542111 000000 112234666654444 7799999887644  


Q ss_pred             -CcEEeCCCCCccCccccCC
Q 039635          158 -PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       158 -~~Y~C~~C~f~~H~~C~~~  176 (579)
                       .+|+|..|++.+|..|+..
T Consensus       128 ~qg~~C~~C~~~~H~~C~~~  147 (674)
T 3pfq_A          128 HQGMKCDTCMMNVHKRCVMN  147 (674)
T ss_dssp             SCEECCSSSCCCBCSSTTSS
T ss_pred             cCccccccCCcchhhhhhhc
Confidence             6899999999999999975

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=96.85  E-value=0.00039  Score=78.70  Aligned_cols=95  Identities=22%  Similarity=0.472  Sum_probs=34.3

Q ss_pred             CcceeecCC--CCCCccccCCCCC---CcEEcCCCCCCCccccccccCCCcc-E-------e--ecCCCCCceEEeeccc
Q 039635           13 QHPFSCGSR--PERCFACLGEISG---NFYICGHCDSDSPLFHQSCAELPQL-L-------Q--TNFHPHCRFRFKEESD   77 (579)
Q Consensus        13 ~H~l~~~~~--~~~C~~C~~~~~~---~~Y~C~~C~~~~~~~Hk~C~~~p~~-I-------~--hp~Hp~H~L~l~~~~~   77 (579)
                      .|.+.....  +..|+.|.+.++|   -+|.|..|++   .+|+.|.+.-.. -       .  -+. ..|.+....   
T Consensus        37 ~H~f~~~~~~~p~~C~~C~~~i~g~~~qg~~C~~C~~---~~H~~C~~~v~~~c~~~~~~~~~~~~~-~~h~~~~~~---  109 (674)
T 3pfq_A           37 NHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSF---VVHKRCHEFVTFSCPGADKGPASDDPR-SKHKFKIHT---  109 (674)
T ss_dssp             ---------------------------------------------------------------------CCCCCEEC---
T ss_pred             CceEEeeeCCCCCccccccccccccCCceeECCCCCC---CcChhhcCcCcccCCCccccccccccc-CCcceeecC---
Confidence            355544433  7789999877775   3899999999   999999974211 0       0  111 236666543   


Q ss_pred             cccccccccccccccccCCCCC---eeecCCCCcccChhhhcccc
Q 039635           78 VFSFKRTLEFGCDFCDQSHKGY---KYCCDLCNFQIGFACAATLI  119 (579)
Q Consensus        78 ~~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lh~~Ca~~~~  119 (579)
                          ... .-+|+.|++.+.|.   .|+|..|++.+|.+|+...+
T Consensus       110 ----~~~-~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~  149 (674)
T 3pfq_A          110 ----YSS-PTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVP  149 (674)
T ss_dssp             ----CSS-CCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSSSC
T ss_pred             ----CCC-CCCCCccccccchhhcCccccccCCcchhhhhhhccC
Confidence                111 45899999998764   49999999999999998765

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6

Probab=96.22  E-value=0.0019  Score=47.91  Aligned_cols=42  Identities=21%  Similarity=0.715  Sum_probs=35.3

Q ss_pred             cccccccccCCCCCeeecCCC-CcccChhhhccccchhccccCeeeccCCCCCCEEcc
Q 039635           86 EFGCDFCDQSHKGYKYCCDLC-NFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLE  142 (579)
Q Consensus        86 ~~~C~~C~~~~~g~~Y~C~~C-~f~lh~~Ca~~~~~~~~~~~~~I~hp~H~H~L~~~~  142 (579)
                      .+.|++|++.+ |.+|+|..| ||+|...|....              .|.|++....
T Consensus         6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~--------------~H~H~m~~~~   48 (52)
T 1tot_A            6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTK--------------SHTHKMVKWG   48 (52)
T ss_dssp             CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHH--------------CCCSSEEEEC
T ss_pred             EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCC--------------CCCCceEEec
Confidence            56899999987 888999999 899999998863              2688887654

>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*

Probab=95.55  E-value=0.0071  Score=44.12  Aligned_cols=32  Identities=25%  Similarity=0.729  Sum_probs=28.8

Q ss_pred             cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          145 EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       145 ~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      +..|+.|++.+.|   .+|+|..|++.+|+.|+..
T Consensus        11 pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~   45 (50)
T 1ptq_A           11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   45 (50)
T ss_dssp             CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CCCcCCCCceeeccCCccCEeCCCCCeECHHHhhh
Confidence            7889999998865   7899999999999999974

>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=95.33  E-value=0.013  Score=45.30  Aligned_cols=43  Identities=19%  Similarity=0.525  Sum_probs=35.1

Q ss_pred             CCCCCEEccCC-cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          134 HRHPLIRLEVD-EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       134 H~H~L~~~~~~-~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      -.|.+...... +..|+.|++.+.|   .+|+|..|++.+|+.|+..
T Consensus        11 ~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~   57 (65)
T 2enz_A           11 MPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK   57 (65)
T ss_dssp             CCCCEEECCCCSCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred             CCCccEeEcCCCCcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence            35666665444 7899999998865   7899999999999999974

>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A

Probab=95.32  E-value=0.012  Score=43.01  Aligned_cols=40  Identities=20%  Similarity=0.566  Sum_probs=30.8

Q ss_pred             CCCEEccCCcccccccccccCCCcEEeCCCCCccCccccCC
Q 039635          136 HPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       136 H~L~~~~~~~~~C~~C~~~~~~~~Y~C~~C~f~~H~~C~~~  176 (579)
                      |.++........|+.|++.|. .+|+|.+|++..|+.|+..
T Consensus         5 HrF~~~t~~~t~C~~C~k~i~-~G~kC~~Ck~~cH~kC~~~   44 (49)
T 1kbe_A            5 HRFSTKSWLSQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKE   44 (49)
T ss_dssp             CCEEEECCSSCCCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred             cccCccCCCCcCccccCceeE-CcCCCCCCCCccchhhcCc
Confidence            444433222468999999986 4699999999999999974

>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*

Probab=95.26  E-value=0.015  Score=42.39  Aligned_cols=34  Identities=21%  Similarity=0.518  Sum_probs=29.2

Q ss_pred             cccccccccCCCCC---eeecCCCCcccChhhhcccc
Q 039635           86 EFGCDFCDQSHKGY---KYCCDLCNFQIGFACAATLI  119 (579)
Q Consensus        86 ~~~C~~C~~~~~g~---~Y~C~~C~f~lh~~Ca~~~~  119 (579)
                      .-.|+.|++.+.|.   .|+|+.|++.+|.+|+...+
T Consensus        11 pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~   47 (50)
T 1ptq_A           11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVA   47 (50)
T ss_dssp             CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSC
T ss_pred             CCCcCCCCceeeccCCccCEeCCCCCeECHHHhhhcC
Confidence            45799999999874   39999999999999998743

>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A

Probab=95.18  E-value=0.014  Score=42.94  Aligned_cols=41  Identities=27%  Similarity=0.686  Sum_probs=33.3

Q ss_pred             CCCCEEccCC-cccccccccccCCCcEEeCCCCCccCccccCC
Q 039635          135 RHPLIRLEVD-EEWCRICRNNILGPSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       135 ~H~L~~~~~~-~~~C~~C~~~~~~~~Y~C~~C~f~~H~~C~~~  176 (579)
                      .|.+...... +..|+.|++.+. .+|+|..|++.+|+.|+..
T Consensus         3 ~H~F~~~~~~~pt~C~~C~~~l~-qG~~C~~C~~~~H~~C~~~   44 (52)
T 1faq_A            3 THNFARKTFLKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTK   44 (52)
T ss_dssp             CCCCEEECCSSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred             CceeEeEeCCCCcCCCCcccccc-cCCEeCCCCCeEChhHHhh
Confidence            3555544433 789999999887 7999999999999999974

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=95.15  E-value=0.025  Score=45.99  Aligned_cols=50  Identities=18%  Similarity=0.451  Sum_probs=38.5

Q ss_pred             CCccccccc-ccccCCCCCceeecCC-C---ceecccccCCCccc-ccccCCCCeEEEecC
Q 039635          377 DVPCYACGK-VLIQDQNHPTYGCDPC-R---IYLHKTCAQMPRQI-QHVLHRHPLTVTTND  431 (579)
Q Consensus       377 ~~~C~aC~~-~i~~~~~~~~Y~C~~C-~---f~lH~~Ca~lP~~~-~h~~H~h~L~l~~~~  431 (579)
                      .+.|++|++ +|    .|..|+|.+| |   |.|.+.|....+.. .|.. .|++.....+
T Consensus        21 ~~~Cd~C~~~pI----~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~-~H~~~~i~~~   76 (82)
T 2fc7_A           21 GFKCDNCGIEPI----QGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKE-DHQLEPIYRS   76 (82)
T ss_dssp             SCCCSSSCCSSE----ESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCS-SSCEEEECSC
T ss_pred             cCCCCCCCCCcc----eeceEECCcCCCCcceecHHHHHhCccccCCCCC-CCCEEEeeCC
Confidence            789999996 77    6899999999 8   99999999986532 2321 4777766543

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=95.07  E-value=0.0092  Score=50.26  Aligned_cols=44  Identities=23%  Similarity=0.603  Sum_probs=36.0

Q ss_pred             ccccccccc-ccCCCcEEeCCC-CCccCccccCCCceeecCCCCCCeeEEec
Q 039635          145 EEWCRICRN-NILGPSYGCLPC-KFYIHNSCSELPQQVLHPFHAHHSLKLQN  194 (579)
Q Consensus       145 ~~~C~~C~~-~~~~~~Y~C~~C-~f~~H~~C~~~P~~i~hp~Hp~H~L~L~~  194 (579)
                      ...|++|+. +|.|.+|+|..| ||+|...|....   .|   +.|++....
T Consensus        31 gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~---~H---~~H~f~~i~   76 (98)
T 2dip_A           31 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY---CH---LSHTFTFRE   76 (98)
T ss_dssp             CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT---SG---GGSCEEECC
T ss_pred             CCCCcCCCCCCcccCeEECCCCCCccHHHHHHccC---CC---CCCCeeEec
Confidence            478999986 689999999999 999999998754   24   567887644

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=95.07  E-value=0.018  Score=46.80  Aligned_cols=48  Identities=25%  Similarity=0.474  Sum_probs=37.3

Q ss_pred             ccccccccc-ccCCCcEEeCCC-C---CccCccccCCCceeecCCC-CCCeeEEec
Q 039635          145 EEWCRICRN-NILGPSYGCLPC-K---FYIHNSCSELPQQVLHPFH-AHHSLKLQN  194 (579)
Q Consensus       145 ~~~C~~C~~-~~~~~~Y~C~~C-~---f~~H~~C~~~P~~i~hp~H-p~H~L~L~~  194 (579)
                      ...|++|+. +|.|.+|+|..| |   |+|...|.....+.  ..| +.|+++...
T Consensus        21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~--~~H~~~H~~~~i~   74 (82)
T 2fc7_A           21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHET--DIHKEDHQLEPIY   74 (82)
T ss_dssp             SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCC--SSCCSSSCEEEEC
T ss_pred             cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcccc--CCCCCCCCEEEee
Confidence            568999986 689999999999 6   99999999864321  123 568888765

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.03  E-value=0.018  Score=44.34  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=36.9

Q ss_pred             CCccccccc-ccccCCCCCceeecCC-CceecccccCCCccc-ccccCCCCeEEE
Q 039635          377 DVPCYACGK-VLIQDQNHPTYGCDPC-RIYLHKTCAQMPRQI-QHVLHRHPLTVT  428 (579)
Q Consensus       377 ~~~C~aC~~-~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~~~-~h~~H~h~L~l~  428 (579)
                      .+.|++|++ ||    .|..|+|.+| ||.|.+.|....+.. .|.. .||+...
T Consensus        11 ~~~Cd~C~~~pi----~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~-~H~~~~~   60 (63)
T 2e5r_A           11 PVECSYCHSESM----MGFRYRCQQCHNYQLCQDCFWRGHAGGSHSN-QHQMKEY   60 (63)
T ss_dssp             CSCCSSSCCCSS----CSCEEEESSCSSCEECHHHHHHCCCCSSSCT-TCCEEEE
T ss_pred             CCCCcCCCCcce----ecceEEecCCCCchhHHHHHhCCCcCCCCCC-CCCEEEE
Confidence            589999997 47    7999999999 999999998877643 3432 4777643

>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}

Probab=94.85  E-value=0.019  Score=43.59  Aligned_cols=44  Identities=27%  Similarity=0.756  Sum_probs=36.6

Q ss_pred             CCCCCCEE-ccCC-cccccccccccCCCcEEeCCCCCccCccccCC
Q 039635          133 SHRHPLIR-LEVD-EEWCRICRNNILGPSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       133 ~H~H~L~~-~~~~-~~~C~~C~~~~~~~~Y~C~~C~f~~H~~C~~~  176 (579)
                      ...|.+.. .... +.+|+.|+..+...+|+|..|++..|+.|.+.
T Consensus         8 ~~~H~F~~~~~~~~pt~C~~C~~~i~kqg~kC~~C~~~cH~kC~~~   53 (59)
T 1rfh_A            8 GEGHRFVELALRGGPGWCDLCGREVLRQALRCANCKFTCHSECRSL   53 (59)
T ss_dssp             CSSCCCEECCCSSCCEECTTTCSEECSCCEECTTTSCEECHHHHTT
T ss_pred             CCCCcCeeeeccCCCeEchhcchhhhhCccEeCCCCCeEehhhhhh
Confidence            34677777 4444 88999999988778999999999999999975

>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.80  E-value=0.012  Score=46.98  Aligned_cols=44  Identities=23%  Similarity=0.507  Sum_probs=36.9

Q ss_pred             CCCCCCEEccCC-cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          133 SHRHPLIRLEVD-EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       133 ~H~H~L~~~~~~-~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      ...|.+...... +..|+.|++.+.|   .+|+|..|++.+|+.|+..
T Consensus        15 ~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~   62 (74)
T 2db6_A           15 DKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSY   62 (74)
T ss_dssp             SSBCCEEEEECSSCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGG
T ss_pred             CCCCceEEeeCCCCcCchhcChhhccccCCccccCCCCCccChhHHhh
Confidence            456887766555 7899999998876   7899999999999999973

>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}

Probab=94.78  E-value=0.026  Score=44.66  Aligned_cols=44  Identities=27%  Similarity=0.756  Sum_probs=36.8

Q ss_pred             CCCCCCEE-ccCC-cccccccccccCCCcEEeCCCCCccCccccCC
Q 039635          133 SHRHPLIR-LEVD-EEWCRICRNNILGPSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       133 ~H~H~L~~-~~~~-~~~C~~C~~~~~~~~Y~C~~C~f~~H~~C~~~  176 (579)
                      ...|.+.. .... +.+|+.|+..+...+|+|..|++..|+.|+..
T Consensus        21 ~~~H~F~~~~~~~~pt~C~~C~~~l~~qG~kC~~C~~~cHkkC~~~   66 (72)
T 2fnf_X           21 GEGHRFVELALRGGPGWCDLCGREVLRQALRCANCKFTCHSECRSL   66 (72)
T ss_dssp             CSSCCCEECCCCSSCCBCTTTSSBCSSCCEECTTSSCEECTGGGGG
T ss_pred             CCCCccceeecCCCCcchhhhhHHHHhCcCccCCCCCeechhhhcc
Confidence            45688777 4444 88999999988778999999999999999974

>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A

Probab=94.77  E-value=0.024  Score=41.36  Aligned_cols=40  Identities=28%  Similarity=0.483  Sum_probs=32.9

Q ss_pred             CcceeecCC-CCCCccccCCCCCCcEEcCCCCCCCccccccccCC
Q 039635           13 QHPFSCGSR-PERCFACLGEISGNFYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus        13 ~H~l~~~~~-~~~C~~C~~~~~~~~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      +|.+...+. +..|+.|.+.++. +|.|.+|++   ..|++|+..
T Consensus         4 ~HrF~~~t~~~t~C~~C~k~i~~-G~kC~~Ck~---~cH~kC~~~   44 (49)
T 1kbe_A            4 THRFSTKSWLSQVCNVCQKSMIF-GVKCKHCRL---KCHNKCTKE   44 (49)
T ss_dssp             CCCEEEECCSSCCCSSSCCSSCC-EEEETTTTE---EESSSCTTT
T ss_pred             CcccCccCCCCcCccccCceeEC-cCCCCCCCC---ccchhhcCc
Confidence            356655544 5789999888887 899999999   999999974

>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.69  E-value=0.027  Score=46.10  Aligned_cols=46  Identities=17%  Similarity=0.452  Sum_probs=37.6

Q ss_pred             ccCCCCCCEEccCC-cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          131 HFSHRHPLIRLEVD-EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       131 hp~H~H~L~~~~~~-~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      .+.-.|.+...... +..|+.|+..++|   .+|+|..|++.+|+.|+..
T Consensus        13 ~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~   62 (85)
T 2eli_A           13 DPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN   62 (85)
T ss_dssp             CTTTSCCCEEECCSSCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred             CCCCCcccEeeeCCCCcCCcccCccccccccCCCcCCCcCCccCHhHHhh
Confidence            34446888776554 7899999998865   7899999999999999985

>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*

Probab=94.67  E-value=0.017  Score=44.63  Aligned_cols=42  Identities=21%  Similarity=0.553  Sum_probs=33.7

Q ss_pred             CCCCEEccCC-cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          135 RHPLIRLEVD-EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       135 ~H~L~~~~~~-~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      .|.+...... +..|+.|++.+.|   .+|+|..|++.+|+.|+..
T Consensus         9 ~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~   54 (65)
T 3uej_A            9 SHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   54 (65)
T ss_dssp             ECCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CceEEeEeCCCCCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence            4666554433 7899999998755   6899999999999999975

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.54  E-value=0.025  Score=43.59  Aligned_cols=34  Identities=26%  Similarity=0.746  Sum_probs=29.5

Q ss_pred             cccccccccC-CCCCeeecCCC-CcccChhhhcccc
Q 039635           86 EFGCDFCDQS-HKGYKYCCDLC-NFQIGFACAATLI  119 (579)
Q Consensus        86 ~~~C~~C~~~-~~g~~Y~C~~C-~f~lh~~Ca~~~~  119 (579)
                      ...|++|++. +.|.+|+|..| ||+|...|.....
T Consensus        11 ~~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~   46 (63)
T 2e5r_A           11 PVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGH   46 (63)
T ss_dssp             CSCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCC
T ss_pred             CCCCcCCCCcceecceEEecCCCCchhHHHHHhCCC
Confidence            3579999975 88999999999 9999999988743

>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*

Probab=94.47  E-value=0.029  Score=43.33  Aligned_cols=34  Identities=21%  Similarity=0.512  Sum_probs=29.4

Q ss_pred             cccccccccCCCCCe---eecCCCCcccChhhhcccc
Q 039635           86 EFGCDFCDQSHKGYK---YCCDLCNFQIGFACAATLI  119 (579)
Q Consensus        86 ~~~C~~C~~~~~g~~---Y~C~~C~f~lh~~Ca~~~~  119 (579)
                      .-.|+.|++.+.|..   |+|+.|++.+|..|+...+
T Consensus        20 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~   56 (65)
T 3uej_A           20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVA   56 (65)
T ss_dssp             CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSC
T ss_pred             CCcccccChhhhccCceeeECCCCCCeEchhHhhhCC
Confidence            457999999998743   9999999999999998754

>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}

Probab=94.46  E-value=0.03  Score=43.47  Aligned_cols=45  Identities=20%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             CCceEEeeccccccccccccccccccccCCCCCe---eecCCCCcccChhhhcccc
Q 039635           67 HCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYK---YCCDLCNFQIGFACAATLI  119 (579)
Q Consensus        67 ~H~L~l~~~~~~~~~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lh~~Ca~~~~  119 (579)
                      .|.++....       .. .-.|+.|++.++|..   |+|+.|++.+|.+|+...+
T Consensus        13 ~H~F~~~~~-------~~-pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v~   60 (66)
T 1y8f_A           13 QHNFEVWTA-------TT-PTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLN   60 (66)
T ss_dssp             CCCEEEEEC-------SS-CCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHHSC
T ss_pred             CcccEeeeC-------CC-CcChhhcChhhcccCcceeEcCCCCCeeCHHHHhhCc
Confidence            477776541       11 457999999998743   9999999999999998744

>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.17  E-value=0.03  Score=45.59  Aligned_cols=43  Identities=26%  Similarity=0.709  Sum_probs=35.2

Q ss_pred             CCCCCEEccCC-cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          134 HRHPLIRLEVD-EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       134 H~H~L~~~~~~-~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      ..|.+...... +..|+.|++.+.|   .+|.|..|++.+|+.|+..
T Consensus        16 ~~H~F~~~~~~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~   62 (83)
T 2yuu_A           16 KNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK   62 (83)
T ss_dssp             GGCCEEEECCSSCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred             CCCceEeEeCCCCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence            45666655444 7899999998865   6899999999999999975

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=94.16  E-value=0.13  Score=43.98  Aligned_cols=102  Identities=20%  Similarity=0.389  Sum_probs=63.9

Q ss_pred             CceeecccccccccCceEEeCCCCcccccCCccCCCccccCCcceeEEEeecCCCccccccCcCCCCCCceeeeccCCCc
Q 039635          198 GLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCVECDF  277 (579)
Q Consensus       198 ~~~~C~~C~~~~~~~~~Y~C~~C~f~lh~~Ca~~p~~~~~~~H~H~L~l~~~~~~~~~C~~C~~~~~~~~y~Y~C~~C~f  277 (579)
                      .+..|.+|++.....-.-.|..|+-..|+.|+..+.......   . ++-   ..-..|.+|++..+... ...|..|+-
T Consensus         6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~---~-W~C---~~C~~C~~C~~~~~~~~-ll~Cd~C~~   77 (111)
T 2ysm_A            6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRA---G-WQC---PECKVCQNCKQSGEDSK-MLVCDTCDK   77 (111)
T ss_dssp             CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTST---T-CCC---TTTCCCTTTCCCSCCTT-EEECSSSCC
T ss_pred             CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccccccc---C-ccC---CcCCcccccCccCCCCC-eeECCCCCc
Confidence            345799998865322347899999999999998764321100   0 000   11235777877654322 234999999


Q ss_pred             eecCCCCCCCCCCeeecccCCceeeeecCCCcccccccCcccccccccccCC
Q 039635          278 KFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDP  329 (579)
Q Consensus       278 ~lH~~Ca~~~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~~C~~~~~~  329 (579)
                      .+|..|.  ..|..              ..+.      +.|.|..|.....+
T Consensus        78 ~yH~~Cl--~ppl~--------------~~P~------g~W~C~~C~~c~~g  107 (111)
T 2ysm_A           78 GYHTFCL--QPVMK--------------SVPT------NGWKCKNCRICISG  107 (111)
T ss_dssp             EEEGGGS--SSCCS--------------SCCS------SCCCCHHHHCCSCS
T ss_pred             HHhHHhc--CCccc--------------cCCC------CCcCCcCCcCcCCC
Confidence            9999999  43321              1122      67999999766543

>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}

Probab=94.10  E-value=0.022  Score=44.23  Aligned_cols=42  Identities=21%  Similarity=0.581  Sum_probs=34.4

Q ss_pred             CCCCEEccCC-cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          135 RHPLIRLEVD-EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       135 ~H~L~~~~~~-~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      .|.+...... +..|+.|++.+.|   .+|+|..|++.+|+.|+..
T Consensus        13 ~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~   58 (66)
T 1y8f_A           13 QHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDL   58 (66)
T ss_dssp             CCCEEEEECSSCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHH
T ss_pred             CcccEeeeCCCCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhh
Confidence            5666665444 7899999998865   6799999999999999863

>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=93.87  E-value=0.028  Score=45.10  Aligned_cols=44  Identities=23%  Similarity=0.601  Sum_probs=35.5

Q ss_pred             CCCCCCEEccCC-cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          133 SHRHPLIRLEVD-EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       133 ~H~H~L~~~~~~-~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      ...|.+...... +..|+.|++.+.|   .+|.|..|++.+|+.|+..
T Consensus        21 ~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~   68 (77)
T 2enn_A           21 VKCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK   68 (77)
T ss_dssp             SSSCEEEEECCSSCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred             CCCCccEEEcCCCCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence            345666655444 7899999998865   7899999999999999974

>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=93.67  E-value=0.081  Score=40.80  Aligned_cols=43  Identities=23%  Similarity=0.396  Sum_probs=35.2

Q ss_pred             cCCcceeecCC--CCCCccccCCCCC---CcEEcCCCCCCCccccccccCC
Q 039635           11 VHQHPFSCGSR--PERCFACLGEISG---NFYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus        11 ~H~H~l~~~~~--~~~C~~C~~~~~~---~~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      .-.|.+...+.  +..|+.|.+.++|   .+|.|..|++   .+|+.|++.
T Consensus        10 ~~~H~F~~~~~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~---~~Hk~C~~~   57 (65)
T 2enz_A           10 DMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGM---NVHHRCQTK   57 (65)
T ss_dssp             CCCCCEEECCCCSCCBCSSSCCBCCCSSSCSEEESSSCC---EECTTTTTT
T ss_pred             CCCCccEeEcCCCCcCchhcChhheecCCcccccCCCCC---ccCHhHHhh
Confidence            34678877655  7899999777765   3899999999   999999975

>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.56  E-value=0.023  Score=45.21  Aligned_cols=47  Identities=21%  Similarity=0.343  Sum_probs=37.9

Q ss_pred             cccCcCCcceeecCC--CCCCccccCCCCC---CcEEcCCCCCCCccccccccCC
Q 039635            7 LHMHVHQHPFSCGSR--PERCFACLGEISG---NFYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus         7 ~~~p~H~H~l~~~~~--~~~C~~C~~~~~~---~~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      .......|.+...+.  +..|+.|.+.++|   .+|.|..|++   .+|+.|++.
T Consensus        11 k~~~~~~H~F~~~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~---~~Hk~C~~~   62 (74)
T 2db6_A           11 KLVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKT---NIHEHCQSY   62 (74)
T ss_dssp             CCSCSSBCCEEEEECSSCEECSSSCCEECHHHHEEEEESSSCC---EECTTTTGG
T ss_pred             ccccCCCCceEEeeCCCCcCchhcChhhccccCCccccCCCCC---ccChhHHhh
Confidence            334566788887755  7899999877776   3899999999   999999974

>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.53  E-value=0.079  Score=43.25  Aligned_cols=45  Identities=24%  Similarity=0.428  Sum_probs=36.4

Q ss_pred             cCcCCcceeecCC--CCCCccccCCCCC---CcEEcCCCCCCCccccccccCC
Q 039635            9 MHVHQHPFSCGSR--PERCFACLGEISG---NFYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus         9 ~p~H~H~l~~~~~--~~~C~~C~~~~~~---~~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      .+.-.|.+...+.  +..|+.|...++|   .+|.|..|++   .+|+.|++.
T Consensus        13 ~~~~~H~F~~~~~~~pt~C~~C~~~l~Gl~kqG~~C~~C~~---~~Hk~C~~~   62 (85)
T 2eli_A           13 DPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDM---NVHKQCVIN   62 (85)
T ss_dssp             CTTTSCCCEEECCSSCCBCSSSCCBCCCSSSCEEECSSSCC---EEETTTTTT
T ss_pred             CCCCCcccEeeeCCCCcCCcccCccccccccCCCcCCCcCC---ccCHhHHhh
Confidence            4455677777655  7899999777776   3899999999   999999985

>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A

Probab=93.48  E-value=0.041  Score=40.35  Aligned_cols=39  Identities=23%  Similarity=0.472  Sum_probs=31.8

Q ss_pred             cceeecCC--CCCCccccCCCCCCcEEcCCCCCCCccccccccCC
Q 039635           14 HPFSCGSR--PERCFACLGEISGNFYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus        14 H~l~~~~~--~~~C~~C~~~~~~~~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      |.+...+.  +..|+.|.+.++. +|.|..|++   ..|++|++.
T Consensus         4 H~F~~~~~~~pt~C~~C~~~l~q-G~~C~~C~~---~~H~~C~~~   44 (52)
T 1faq_A            4 HNFARKTFLKLAFCDICQKFLLN-GFRCQTCGY---KFHEHCSTK   44 (52)
T ss_dssp             CCCEEECCSSCEECTTSSSEECS-EEECTTTTC---CBCSTTSSS
T ss_pred             ceeEeEeCCCCcCCCCccccccc-CCEeCCCCC---eEChhHHhh
Confidence            55554444  7899999877775 999999999   999999974

>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=93.44  E-value=0.05  Score=43.61  Aligned_cols=45  Identities=24%  Similarity=0.398  Sum_probs=35.2

Q ss_pred             CCceEEeeccccccccccccccccccccCCCCCe---eecCCCCcccChhhhcccc
Q 039635           67 HCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYK---YCCDLCNFQIGFACAATLI  119 (579)
Q Consensus        67 ~H~L~l~~~~~~~~~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lh~~Ca~~~~  119 (579)
                      .|.+.....       .. .-.|+.|++.++|..   |+|+.|+|.+|..|+...+
T Consensus        23 ~H~F~~~~f-------~~-pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~   70 (77)
T 2enn_A           23 CHEFTATFF-------PQ-PTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVI   70 (77)
T ss_dssp             SCEEEEECC-------SS-CEECSSSCCEECCTTCCEEECSSSCCEEESGGGSSCC
T ss_pred             CCccEEEcC-------CC-CcCccccChhhccccccccCcCCCCCcCCHhHHhhCc
Confidence            477776541       12 458999999998743   9999999999999998754

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=93.38  E-value=0.036  Score=46.59  Aligned_cols=44  Identities=25%  Similarity=0.637  Sum_probs=36.1

Q ss_pred             CCccccccc-ccccCCCCCceeecCC-CceecccccCCCcccccccCCCCeEEEe
Q 039635          377 DVPCYACGK-VLIQDQNHPTYGCDPC-RIYLHKTCAQMPRQIQHVLHRHPLTVTT  429 (579)
Q Consensus       377 ~~~C~aC~~-~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~~~~h~~H~h~L~l~~  429 (579)
                      .+.|++|+. +|    .|..|+|.+| ||.|.+.|.....   |+  .|++....
T Consensus        31 gv~Cd~C~~~pI----~G~RykC~~C~d~DLC~~C~~~~~---H~--~H~f~~i~   76 (98)
T 2dip_A           31 GIPCNNCKQFPI----EGKCYKCTECIEYHLCQECFDSYC---HL--SHTFTFRE   76 (98)
T ss_dssp             CCCCSSSCCSSC----CSCEEEESSSSSCEEEHHHHHTTS---GG--GSCEEECC
T ss_pred             CCCCcCCCCCCc----ccCeEECCCCCCccHHHHHHccCC---CC--CCCeeEec
Confidence            599999997 77    7999999999 9999999988763   53  46776543

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6

Probab=93.17  E-value=0.018  Score=42.61  Aligned_cols=41  Identities=20%  Similarity=0.440  Sum_probs=33.4

Q ss_pred             CCcccccccccccCCCCCceeecCC-CceecccccCCCcccccccCCCCeEEE
Q 039635          377 DVPCYACGKVLIQDQNHPTYGCDPC-RIYLHKTCAQMPRQIQHVLHRHPLTVT  428 (579)
Q Consensus       377 ~~~C~aC~~~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~~~~h~~H~h~L~l~  428 (579)
                      .+.|++|.+.|     +..|+|.+| ||.|...|....      .|.|++.-.
T Consensus         6 ~~~Cd~C~~~i-----g~R~~C~~C~dyDLC~~C~~~~------~H~H~m~~~   47 (52)
T 1tot_A            6 VYTCNECKHHV-----ETRWHCTVCEDYDLCINCYNTK------SHTHKMVKW   47 (52)
T ss_dssp             CEEETTTTEEE-----SSEEEESSSSSCEECHHHHHHH------CCCSSEEEE
T ss_pred             EEECCCCCCCC-----cceEEcCCCCCchhHHHHHhCC------CCCCceEEe
Confidence            57899999885     468999999 999999998763      257887644

>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}

Probab=93.06  E-value=0.048  Score=41.35  Aligned_cols=33  Identities=24%  Similarity=0.619  Sum_probs=27.8

Q ss_pred             CcccccccccccCCCCCeeeecccCeEEecccccc
Q 039635          316 DLFYCDACKEEIDPQNPFCCCIECGYYIHWRCTVI  350 (579)
Q Consensus       316 ~~~~C~~C~~~~~~~~~~Y~C~~C~f~lh~~C~~~  350 (579)
                      ..-+|+.|++.+ . ..+|.|++|+|+.|.+|+..
T Consensus        21 ~pt~C~~C~~~i-~-kqg~kC~~C~~~cH~kC~~~   53 (59)
T 1rfh_A           21 GPGWCDLCGREV-L-RQALRCANCKFTCHSECRSL   53 (59)
T ss_dssp             CCEECTTTCSEE-C-SCCEECTTTSCEECHHHHTT
T ss_pred             CCeEchhcchhh-h-hCccEeCCCCCeEehhhhhh
Confidence            345799999999 3 45799999999999999763

>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}

Probab=92.92  E-value=0.11  Score=41.08  Aligned_cols=44  Identities=27%  Similarity=0.504  Sum_probs=35.4

Q ss_pred             CcCCcceee-cCC--CCCCccccCCCCCCcEEcCCCCCCCccccccccCC
Q 039635           10 HVHQHPFSC-GSR--PERCFACLGEISGNFYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus        10 p~H~H~l~~-~~~--~~~C~~C~~~~~~~~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      +...|.+.. .+.  +..|+.|.+.++..+|.|..|++   ..|+.|.+.
T Consensus        20 ~~~~H~F~~~~~~~~pt~C~~C~~~l~~qG~kC~~C~~---~cHkkC~~~   66 (72)
T 2fnf_X           20 RGEGHRFVELALRGGPGWCDLCGREVLRQALRCANCKF---TCHSECRSL   66 (72)
T ss_dssp             GCSSCCCEECCCCSSCCBCTTTSSBCSSCCEECTTSSC---EECTGGGGG
T ss_pred             cCCCCccceeecCCCCcchhhhhHHHHhCcCccCCCCC---eechhhhcc
Confidence            456788877 444  88999997655555899999999   999999975

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=92.84  E-value=0.071  Score=45.88  Aligned_cols=95  Identities=24%  Similarity=0.627  Sum_probs=59.7

Q ss_pred             eeeccccccc------ccCceEEeCCCCcccccCCccCCCccccCCcceeEEEeecC----CCccccccCcCCCC--CCc
Q 039635          200 LYCDACDSMI------MSAKHYRCDECDFDLHLDCISVKPKIRYQGQEHLLVLMKSG----SGTTTCQACSFDTK--PGA  267 (579)
Q Consensus       200 ~~C~~C~~~~------~~~~~Y~C~~C~f~lh~~Ca~~p~~~~~~~H~H~L~l~~~~----~~~~~C~~C~~~~~--~~~  267 (579)
                      ..|.+|...-      ..+-...|+.|+-..|..|+...+.+...        .++.    ..-..|.+|+..+.  +..
T Consensus         6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~--------~~~~~W~C~~C~~C~vC~~~~~~~~~l   77 (112)
T 3v43_A            6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVR--------VKALRWQCIECKTCSSCRDQGKNADNM   77 (112)
T ss_dssp             SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHH--------HHTSCCCCTTTCCBTTTCCCCCTTCCC
T ss_pred             ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHH--------hhccccccccCCccccccCcCCCccce
Confidence            3688886542      11347899999999999999765432210        0010    12236788876532  234


Q ss_pred             eeeeccCCCceecCCCCCCCCCCeeecccCCceeeeecCCCcccccccCcccccccccc
Q 039635          268 FFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEE  326 (579)
Q Consensus       268 y~Y~C~~C~f~lH~~Ca~~~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~~C~~~  326 (579)
                      ..  |..|+-.+|..|.  ..|..              ..+.      ++|.|..|+.+
T Consensus        78 l~--Cd~C~~~yH~~Cl--~p~l~--------------~~P~------~~W~C~~C~~k  112 (112)
T 3v43_A           78 LF--CDSCDRGFHMECC--DPPLT--------------RMPK------GMWICQICRPR  112 (112)
T ss_dssp             EE--CTTTCCEECGGGC--SSCCS--------------SCCS------SCCCCTTTSCC
T ss_pred             EE--cCCCCCeeecccC--CCCCC--------------CCCC------CCeECCCCCCc
Confidence            44  9999999999999  43321              1222      68999999763

>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.29  E-value=0.11  Score=42.12  Aligned_cols=44  Identities=25%  Similarity=0.590  Sum_probs=35.9

Q ss_pred             CcCCcceeecCC--CCCCccccCCCCC---CcEEcCCCCCCCccccccccCC
Q 039635           10 HVHQHPFSCGSR--PERCFACLGEISG---NFYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus        10 p~H~H~l~~~~~--~~~C~~C~~~~~~---~~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      ....|.+...+.  +..|+.|.+.++|   .+|.|..|++   .+|+.|.+.
T Consensus        14 ~~~~H~F~~~~~~~pt~C~~C~~~lwGl~kqg~~C~~C~~---~~Hk~C~~~   62 (83)
T 2yuu_A           14 YIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNA---AIHKKCIDK   62 (83)
T ss_dssp             CGGGCCEEEECCSSCCCCSSSCCCCCSSSCCEEEETTTCC---EECTTGGGT
T ss_pred             ccCCCceEeEeCCCCcChhhcChhhccccccccccCCcCC---eeChhhhhh
Confidence            345677776655  8899999877775   3899999999   999999975

>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}

Probab=91.83  E-value=0.073  Score=40.65  Aligned_cols=42  Identities=29%  Similarity=0.574  Sum_probs=32.7

Q ss_pred             CCCCEEccCC-ccccccccccc-CC-CcEEeCCCCCccCccccCC
Q 039635          135 RHPLIRLEVD-EEWCRICRNNI-LG-PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       135 ~H~L~~~~~~-~~~C~~C~~~~-~~-~~Y~C~~C~f~~H~~C~~~  176 (579)
                      .|.+...... +..|+.|++.+ .| .+|+|.+|.+..|++|.+.
T Consensus         8 ~H~F~~kt~~~~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~   52 (61)
T 4b6d_A            8 LHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDR   52 (61)
T ss_dssp             CCCEEEEECCSCEECTTTCCEECTTCEEEEESSSSCEECGGGGGG
T ss_pred             ceeEEeeeccCCcccccccCEEEEeeEeeECCCCCCeEchhHhhc
Confidence            4666554333 78999998877 43 6799999999999999864

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=90.87  E-value=0.11  Score=44.55  Aligned_cols=80  Identities=13%  Similarity=0.341  Sum_probs=52.9

Q ss_pred             CceeeeeccCceeecccCCCCccccccCCCCCceeeecCCCCCCC-CcccccccccccCCcceEEEcCCCCCcccccccc
Q 039635          487 ASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNY-GTQICDVCEEERDQQERVYYCEECDYIADFMCVI  565 (579)
Q Consensus       487 ~~~~~C~~C~f~Lh~~Ca~lp~~~~~~~~~~H~L~l~~~~~~~~~-~~~~C~~Ce~~~~~~~~~y~C~~C~~~lh~~C~~  565 (579)
                      +.++.|..|+-..|..|+.+...+...        +.-+  .+.- .=..|.+|.+..+...-+..|+.|+-..|+.|+.
T Consensus        24 ~~Ll~C~~C~~~~H~~Cl~~~~~~~~~--------~~~~--~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~   93 (112)
T 3v43_A           24 EELISCADCGNSGHPSCLKFSPELTVR--------VKAL--RWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCD   93 (112)
T ss_dssp             CCCEECTTTCCEECHHHHTCCHHHHHH--------HHTS--CCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCS
T ss_pred             hhceEhhhcCCCCCCchhcCCHHHHHH--------hhcc--ccccccCCccccccCcCCCccceEEcCCCCCeeecccCC
Confidence            468999999999999999875333110        0000  1211 1114888886433345678999999999999983


Q ss_pred             --cccccccEEee
Q 039635          566 --EVTKPTDYFLE  576 (579)
Q Consensus       566 --~~~~p~~~~~~  576 (579)
                        -...|.+.|..
T Consensus        94 p~l~~~P~~~W~C  106 (112)
T 3v43_A           94 PPLTRMPKGMWIC  106 (112)
T ss_dssp             SCCSSCCSSCCCC
T ss_pred             CCCCCCCCCCeEC
Confidence              34467777765

>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=90.65  E-value=0.068  Score=43.55  Aligned_cols=42  Identities=19%  Similarity=0.447  Sum_probs=33.5

Q ss_pred             CCCCCEEccCC-cccccccccccCC---C--cEEeCCCCCccCccccC
Q 039635          134 HRHPLIRLEVD-EEWCRICRNNILG---P--SYGCLPCKFYIHNSCSE  175 (579)
Q Consensus       134 H~H~L~~~~~~-~~~C~~C~~~~~~---~--~Y~C~~C~f~~H~~C~~  175 (579)
                      ..|.+...... +.+|+.|+..++|   .  +|.|..|++.+|+.|..
T Consensus        23 ~~H~F~~~~~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~   70 (84)
T 2row_A           23 KGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD   70 (84)
T ss_dssp             TTEEEEEECCSSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred             CCcceEeEcCCCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhC
Confidence            34555554444 7899999998865   3  99999999999999997

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=89.77  E-value=0.51  Score=40.24  Aligned_cols=75  Identities=17%  Similarity=0.347  Sum_probs=50.6

Q ss_pred             ceeeeeccCceeecccCCCCccccccCCCCCceeeecCCCCCCC-CcccccccccccCCcceEEEcCCCCCcccccccc-
Q 039635          488 SFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNY-GTQICDVCEEERDQQERVYYCEECDYIADFMCVI-  565 (579)
Q Consensus       488 ~~~~C~~C~f~Lh~~Ca~lp~~~~~~~~~~H~L~l~~~~~~~~~-~~~~C~~Ce~~~~~~~~~y~C~~C~~~lh~~C~~-  565 (579)
                      .++.|..|.-..|..|..++...+ .+          +  .+.- .=..|.+|++..+ ...+..|+.|+-..|+.|+- 
T Consensus        21 ~ll~C~~C~~~~H~~Cl~~~~~~~-~~----------~--~W~C~~C~~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~p   86 (111)
T 2ysm_A           21 DQFFCTTCGQHYHGMCLDIAVTPL-KR----------A--GWQCPECKVCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQP   86 (111)
T ss_dssp             TSEECSSSCCEECTTTTTCCCCTT-TS----------T--TCCCTTTCCCTTTCCCSC-CTTEEECSSSCCEEEGGGSSS
T ss_pred             CCeECCCCCCCcChHHhCCccccc-cc----------c--CccCCcCCcccccCccCC-CCCeeECCCCCcHHhHHhcCC
Confidence            458899999999999998875321 10          1  1111 1114778876543 34589999999999999995 


Q ss_pred             -cccccccEEee
Q 039635          566 -EVTKPTDYFLE  576 (579)
Q Consensus       566 -~~~~p~~~~~~  576 (579)
                       ....|.+-|..
T Consensus        87 pl~~~P~g~W~C   98 (111)
T 2ysm_A           87 VMKSVPTNGWKC   98 (111)
T ss_dssp             CCSSCCSSCCCC
T ss_pred             ccccCCCCCcCC
Confidence             34467767754

>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}

Probab=88.95  E-value=0.41  Score=36.45  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=27.6

Q ss_pred             cccccccccCC-CCC-eeecCCCCcccChhhhcccc
Q 039635           86 EFGCDFCDQSH-KGY-KYCCDLCNFQIGFACAATLI  119 (579)
Q Consensus        86 ~~~C~~C~~~~-~g~-~Y~C~~C~f~lh~~Ca~~~~  119 (579)
                      .-.|+.|++.+ .|. .|+|..|.+.+|.+|....+
T Consensus        19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~~~   54 (61)
T 4b6d_A           19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCP   54 (61)
T ss_dssp             CEECTTTCCEECTTCEEEEESSSSCEECGGGGGGSC
T ss_pred             CcccccccCEEEEeeEeeECCCCCCeEchhHhhcCC
Confidence            45899999988 332 39999999999999987643

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=88.14  E-value=0.16  Score=40.00  Aligned_cols=51  Identities=22%  Similarity=0.567  Sum_probs=36.5

Q ss_pred             CCccccccCcCCC--CC-CceeeeccCCCceecCCCCCCCCCCeeecccCCceeeeecCCCcccccccCccccccccccc
Q 039635          251 SGTTTCQACSFDT--KP-GAFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEI  327 (579)
Q Consensus       251 ~~~~~C~~C~~~~--~~-~~y~Y~C~~C~f~lH~~Ca~~~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~~C~~~~  327 (579)
                      .....|.+|+...  .. ....  |..|+..+|..|.  .+|.+                +.      ++|.|..|..+.
T Consensus        14 ~~~~~C~vC~~~~s~~~~~ll~--CD~C~~~~H~~Cl--~~~~v----------------P~------g~W~C~~C~~~~   67 (71)
T 2ku3_A           14 DEDAVCSICMDGESQNSNVILF--CDMCNLAVHQECY--GVPYI----------------PE------GQWLCRHCLQSR   67 (71)
T ss_dssp             CSSCSCSSSCCCCCCSSSCEEE--CSSSCCEEEHHHH--TCSSC----------------CS------SCCCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEE--CCCCCCccccccC--CCCcC----------------CC------CCcCCccCcCcC
Confidence            3567899998764  22 3344  9999999999999  65531                12      789999997643

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=87.85  E-value=0.24  Score=42.67  Aligned_cols=79  Identities=14%  Similarity=0.365  Sum_probs=53.1

Q ss_pred             CceeeeeccCceeecccCCCCccccccCCCCCceeeecCCCCCCCCc-ccccccccccCCcceEEEcCCCCCcccccccc
Q 039635          487 ASFQDCLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGT-QICDVCEEERDQQERVYYCEECDYIADFMCVI  565 (579)
Q Consensus       487 ~~~~~C~~C~f~Lh~~Ca~lp~~~~~~~~~~H~L~l~~~~~~~~~~~-~~C~~Ce~~~~~~~~~y~C~~C~~~lh~~C~~  565 (579)
                      +.++.|..|.-..|..|+.++..+ ..      + +.-+  .+.-.. ..|.+|++..+ ..-+..|+.|+-..|+.|+-
T Consensus        21 ~~Li~C~~C~~~~H~~Cl~~~~~~-~~------~-~~~~--~W~C~~C~~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~   89 (114)
T 2kwj_A           21 EELVSCADCGRSGHPTCLQFTLNM-TE------A-VKTY--KWQCIECKSCILCGTSEN-DDQLLFCDDCDRGYHMYCLN   89 (114)
T ss_dssp             CCCEECSSSCCEECTTTTTCCHHH-HH------H-HHHT--TCCCGGGCCCTTTTCCTT-TTTEEECSSSCCEEETTTSS
T ss_pred             CCCeEeCCCCCccchhhCCChhhh-hh------c-cCCC--ccCccccCccCcccccCC-CCceEEcCCCCccccccccC
Confidence            478999999999999999887543 10      0 0000  111111 14788876443 45678999999999999987


Q ss_pred             --cccccccEEee
Q 039635          566 --EVTKPTDYFLE  576 (579)
Q Consensus       566 --~~~~p~~~~~~  576 (579)
                        ....|.+-|..
T Consensus        90 ppl~~~P~g~W~C  102 (114)
T 2kwj_A           90 PPVAEPPEGSWSC  102 (114)
T ss_dssp             SCCSSCCSSCCCC
T ss_pred             CCccCCCCCCeEC
Confidence              45577777764

>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=87.70  E-value=0.14  Score=41.76  Aligned_cols=42  Identities=21%  Similarity=0.387  Sum_probs=35.1

Q ss_pred             cCCcceeecCC--CCCCccccCCCCCC-----cEEcCCCCCCCccccccccC
Q 039635           11 VHQHPFSCGSR--PERCFACLGEISGN-----FYICGHCDSDSPLFHQSCAE   55 (579)
Q Consensus        11 ~H~H~l~~~~~--~~~C~~C~~~~~~~-----~Y~C~~C~~~~~~~Hk~C~~   55 (579)
                      ...|.+...+.  +..|+.|.+.+||.     +|.|..|++   .+||.|.+
T Consensus        22 ~~~H~F~~~~~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~---~~HkrC~~   70 (84)
T 2row_A           22 HKGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHI---KCHKDHMD   70 (84)
T ss_dssp             ETTEEEEEECCSSCEECSSSSSEECCSSSCCCEEEESSSCC---EEEHHHHH
T ss_pred             cCCcceEeEcCCCCcchhhcCHhhhccccCCCCCEecCCCC---ccchhHhC
Confidence            45677777655  88999998777764     899999999   99999997

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=86.47  E-value=0.36  Score=37.97  Aligned_cols=45  Identities=16%  Similarity=0.527  Sum_probs=35.1

Q ss_pred             ccccccccccc-CCcceEEEcCCCCCcccccccccccccccEEeee
Q 039635          533 TQICDVCEEER-DQQERVYYCEECDYIADFMCVIEVTKPTDYFLEK  577 (579)
Q Consensus       533 ~~~C~~Ce~~~-~~~~~~y~C~~C~~~lh~~C~~~~~~p~~~~~~~  577 (579)
                      ..+|.+|.+.. +....+..||.|+...|..|+--...|.+-|+..
T Consensus        16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~   61 (71)
T 2ku3_A           16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCR   61 (71)
T ss_dssp             SCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCH
T ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCc
Confidence            45799998642 3456788999999999999986666788888753

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=84.63  E-value=0.68  Score=39.78  Aligned_cols=86  Identities=17%  Similarity=0.342  Sum_probs=57.4

Q ss_pred             ecccccccc--------cceEEeecCCCeeeecccCcccccc---cc-------c---cccccccccccCCCceeeeecc
Q 039635          437 TCDACQKYL--------HGHIYKCDSCDFVLDFDCATLQSRV---LN-------H---TAKCRKYKFAISEASFQDCLKC  495 (579)
Q Consensus       437 ~C~~C~~~~--------~g~~Y~C~~c~~~lh~~Ca~~~~~~---~~-------H---C~~C~~~~~~~~~~~~~~C~~C  495 (579)
                      .|++|....        .+-.-.|+.|+-..|..|+..+...   +.       +   |.+|+..   ...+.++.|+.|
T Consensus         3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~---~~~~~ll~Cd~C   79 (114)
T 2kwj_A            3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTS---ENDDQLLFCDDC   79 (114)
T ss_dssp             CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCC---TTTTTEEECSSS
T ss_pred             cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCccccc---CCCCceEEcCCC
Confidence            588885432        1346789999999999999875321   11       2   5555543   134678999999


Q ss_pred             CceeecccCCCCccccccCCCCCceeeecCCCCCCCCccccccccccc
Q 039635          496 NFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEER  543 (579)
Q Consensus       496 ~f~Lh~~Ca~lp~~~~~~~~~~H~L~l~~~~~~~~~~~~~C~~Ce~~~  543 (579)
                      +-..|..|..-|.+-                  ...|.++|..|...+
T Consensus        80 ~~~yH~~Cl~ppl~~------------------~P~g~W~C~~C~~~~  109 (114)
T 2kwj_A           80 DRGYHMYCLNPPVAE------------------PPEGSWSCHLCWELL  109 (114)
T ss_dssp             CCEEETTTSSSCCSS------------------CCSSCCCCHHHHHHH
T ss_pred             CccccccccCCCccC------------------CCCCCeECccccchh
Confidence            999999999754221                  113566699887543

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=83.24  E-value=0.57  Score=35.54  Aligned_cols=41  Identities=20%  Similarity=0.519  Sum_probs=31.6

Q ss_pred             CcccccccccccCCcceEEEcCCCCCcccccccc--cccccccEEee
Q 039635          532 GTQICDVCEEERDQQERVYYCEECDYIADFMCVI--EVTKPTDYFLE  576 (579)
Q Consensus       532 ~~~~C~~Ce~~~~~~~~~y~C~~C~~~lh~~C~~--~~~~p~~~~~~  576 (579)
                      ...+|.+|.+.    .-+..|+.|+...|+.|+-  -...|.+-|..
T Consensus         8 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C   50 (61)
T 1mm2_A            8 HMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLC   50 (61)
T ss_dssp             SCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCC
T ss_pred             CCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCC
Confidence            34579999862    3568899999999999997  44567777764

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=82.60  E-value=1  Score=36.90  Aligned_cols=41  Identities=20%  Similarity=0.570  Sum_probs=31.5

Q ss_pred             CcccccccccccCCcceEEEcCCCCCccccccc--ccccccccEEee
Q 039635          532 GTQICDVCEEERDQQERVYYCEECDYIADFMCV--IEVTKPTDYFLE  576 (579)
Q Consensus       532 ~~~~C~~Ce~~~~~~~~~y~C~~C~~~lh~~C~--~~~~~p~~~~~~  576 (579)
                      ...+|.+|.+.    ..+..|+.|+-..|+.|+  --...|.+-|..
T Consensus        24 n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C   66 (88)
T 1fp0_A           24 SATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSC   66 (88)
T ss_dssp             SSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCC
T ss_pred             CCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCC
Confidence            34579999963    357899999999999999  334467777765

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=81.59  E-value=2.2  Score=36.16  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=50.0

Q ss_pred             cccccccccccCCCceeeee--ccCceeecccCCCCccccccCCCCCceeeecCCCCCCCCcccccccccccCCcceEEE
Q 039635          474 TAKCRKYKFAISEASFQDCL--KCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYY  551 (579)
Q Consensus       474 C~~C~~~~~~~~~~~~~~C~--~C~f~Lh~~Ca~lp~~~~~~~~~~H~L~l~~~~~~~~~~~~~C~~Ce~~~~~~~~~y~  551 (579)
                      |..|+.      .+.++-|+  .|....|+.|..|...-   +          |  ++--..-.|.+|++..     .+.
T Consensus        18 C~~C~~------~G~ll~CD~~~Cp~~fH~~Cl~L~~~P---~----------g--~W~Cp~c~C~~C~k~~-----~~~   71 (107)
T 4gne_A           18 CFQCGD------GGELVMCDKKDCPKAYHLLCLNLTQPP---Y----------G--KWECPWHQCDECSSAA-----VSF   71 (107)
T ss_dssp             CTTTCC------CSEEEECCSTTCCCEECTGGGTCSSCC---S----------S--CCCCGGGBCTTTCSBC-----CEE
T ss_pred             CCcCCC------CCcEeEECCCCCCcccccccCcCCcCC---C----------C--CEECCCCCCCcCCCCC-----CcC
Confidence            666662      35678898  89999999999754211   0          1  1111122366777642     289


Q ss_pred             cCCCCCccccccccccc--ccccEEe
Q 039635          552 CEECDYIADFMCVIEVT--KPTDYFL  575 (579)
Q Consensus       552 C~~C~~~lh~~C~~~~~--~p~~~~~  575 (579)
                      |..|....+..|+-|..  .|.+-|+
T Consensus        72 C~~Cp~sfC~~c~~g~l~~~~~~~~~   97 (107)
T 4gne_A           72 CEFCPHSFCKDHEKGALVPSALEGRL   97 (107)
T ss_dssp             CSSSSCEECTTTCTTSCEECTTTTCE
T ss_pred             cCCCCcchhhhccCCcceecCCCCce
Confidence            99999999999998876  3444444

>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1

Probab=81.44  E-value=0.61  Score=37.89  Aligned_cols=44  Identities=18%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             cceeEEEeecCCCccccccCcCCCCCC--ceeeeccCCCceecCCCC
Q 039635          240 QEHLLVLMKSGSGTTTCQACSFDTKPG--AFFVRCVECDFKFHVQCG  284 (579)
Q Consensus       240 H~H~L~l~~~~~~~~~C~~C~~~~~~~--~y~Y~C~~C~f~lH~~Ca  284 (579)
                      ..|...- .+...+..|.+|++...+.  ...|||.+|...+|.+|+
T Consensus        26 ~~H~Wve-GNl~~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~   71 (84)
T 1r79_A           26 MPHQWLE-GNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCK   71 (84)
T ss_dssp             BCCCEEE-SCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHH
T ss_pred             ceeeEEc-cCCCCCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHH
Confidence            3454432 2323567999999987642  244679999999999998

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=81.09  E-value=1  Score=32.60  Aligned_cols=48  Identities=25%  Similarity=0.647  Sum_probs=33.1

Q ss_pred             ccccCcCCCCCC-ceeeeccCCCceecCCCCCCCCCCeeecccCCceeeeecCCCcccccccCcccccccccc
Q 039635          255 TCQACSFDTKPG-AFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEE  326 (579)
Q Consensus       255 ~C~~C~~~~~~~-~y~Y~C~~C~f~lH~~Ca~~~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~~C~~~  326 (579)
                      .|.+|++..+.. ...  |..|+-.+|..|.  ..|..              ..+.      ++|.|..|...
T Consensus         2 ~C~vC~~~~~~~~ll~--Cd~C~~~~H~~Cl--~p~l~--------------~~P~------g~W~C~~C~~~   50 (51)
T 1f62_A            2 RCKVCRKKGEDDKLIL--CDECNKAFHLFCL--RPALY--------------EVPD------GEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSCCSCCEE--CTTTCCEECHHHH--CTTCC--------------SCCS------SCCSCTTTSCC
T ss_pred             CCCCCCCCCCCCCEEE--CCCCChhhCcccC--CCCcC--------------CCCC------CcEECcCcccc
Confidence            588998776433 344  9999999999999  43321              1122      67999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	579
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	3e-10
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	3e-10
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	2e-06
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	3e-06
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	9e-05
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	2e-04
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	0.001

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 54.9 bits (132), Expect = 3e-10
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 162 CLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECD 221
               +        + P++V H  H  H L+L  T   +  CD C+    +   Y CDECD
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELEL--TRVQVYTCDKCEEEG-TIWSYHCDECD 68

Query: 222 FDLHLDCISVKPKIR 236
           FDLH  C   +    
Sbjct: 69  FDLHAKCALNEDTKE 83

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 54.9 bits (132), Expect = 3e-10
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 398 CDPCRIYLHKTCAQMPRQIQHVLH-RHPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCD 456
                    +     P++++HVLH  H L +T     +  TCD C++      Y CD CD
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRV---QVYTCDKCEEEGTIWSYHCDECD 68

Query: 457 FVLDFDCATLQSRVLNHTAK 476
           F L   CA  +    +  + 
Sbjct: 69  FDLHAKCALNEDTKESGPSS 88

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 492 CLKCNFTLHLMLSPLPLTIEHMSHHQHSLTLMDKHADGNYGTQICDVCEEERDQQERVYY 551
             +       +    P  ++H+ H +H L L             CD CEEE       Y+
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELELT------RVQVYTCDKCEEEGTI--WSYH 63

Query: 552 CEECDYIADFMC 563
           C+ECD+     C
Sbjct: 64  CDECDFDLHAKC 75

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 128 IIEHFSH-RHPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQQVLHP 183
            ++H  H  H L    V    C  C       SY C  C F +H  C+         
Sbjct: 29  KVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDTKESG 85

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 12/80 (15%)

Query: 271 RCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDPQ 330
           R  E + K+        P  +   +H  H L LT             + CD C+EE    
Sbjct: 11  RLKEIEAKYDEIA-KDWPKKVKHVLHEEHELELTRVQV---------YTCDKCEEEGT-- 58

Query: 331 NPFCCCIECGYYIHWRCTVI 350
                C EC + +H +C + 
Sbjct: 59  IWSYHCDECDFDLHAKCALN 78

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 215 YRCDECDFDLHLDCISVKPKIRYQG-QEHLLVLMKSGSGTTTCQACSFDTKPGAFFVRCV 273
            R  E +            K+++   +EH L L +      TC  C  + +   +   C 
Sbjct: 10  ERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQ--VYTCDKC--EEEGTIWSYHCD 65

Query: 274 ECDFKFHVQCGPASPPPIVEH 294
           ECDF  H +C  A      E 
Sbjct: 66  ECDFDLHAKC--ALNEDTKES 84

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 49  FHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNF 108
           + +   + P+ ++   H                     + CD C++    + Y CD C+F
Sbjct: 19  YDEIAKDWPKKVKHVLHEEHELELTRVQV---------YTCDKCEEEGTIWSYHCDECDF 69

Query: 109 QIGFACA 115
            +   CA
Sbjct: 70  DLHAKCA 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	579
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	99.61
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	99.55
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	96.17
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	96.02
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	95.78
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	95.52
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	95.43
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	95.41
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	95.26
d1kbea_	49	Kinase suppressor of Ras, Ksr {Mouse (Mus musculus	95.15
d1kbea_	49	Kinase suppressor of Ras, Ksr {Mouse (Mus musculus	95.04
d1xa6a3	62	Beta-chimaerin, middle domain {Human (Homo sapiens	94.8
d1xa6a3	62	Beta-chimaerin, middle domain {Human (Homo sapiens	94.78
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	94.63
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	94.42
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	94.07
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	93.51
d1r79a_	84	Diacylglycerol kinase delta {Human (Homo sapiens)	92.42
d1r79a_	84	Diacylglycerol kinase delta {Human (Homo sapiens)	92.24
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	88.87
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	87.45
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	85.84
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	81.3

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.61  E-value=7.1e-17  Score=132.77  Aligned_cols=74  Identities=18%  Similarity=0.451  Sum_probs=67.1

Q ss_pred             CCcEEcCCCCCCCccccccccCCCccEeecCCCCCceEEeeccccccccccccccccccccCCCCCeeecCCCCcccChh
Q 039635           34 GNFYICGHCDSDSPLFHQSCAELPQLLQTNFHPHCRFRFKEESDVFSFKRTLEFGCDFCDQSHKGYKYCCDLCNFQIGFA  113 (579)
Q Consensus        34 ~~~Y~C~~C~~~~~~~Hk~C~~~p~~I~hp~Hp~H~L~l~~~~~~~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lh~~  113 (579)
                      |..|+|.+|++   .+|++|+++|++|+||+||+|+|+|..       ..  .+.|++|++.+.|+.|+|.+|||+||..
T Consensus         7 ~t~~~~~e~~~---~~he~c~~~P~~I~Hp~Hp~H~L~L~~-------~~--~~~C~~C~~~~~g~~Y~C~~C~f~LH~~   74 (89)
T d1v5na_           7 GTEERLKEIEA---KYDEIAKDWPKKVKHVLHEEHELELTR-------VQ--VYTCDKCEEEGTIWSYHCDECDFDLHAK   74 (89)
T ss_dssp             CCSSCCSHHHH---HHHHHTSSSCSEECCSTTTTSCEEEEC-------CS--SCCCTTTSCCCCSCEEECTTTCCCCCHH
T ss_pred             chHHHHHHHHh---hhhHHHhcCCCeecCCCCCCCCeEEec-------CC--CCEeCCCCCCcCCcEeEeccCCCEecHH
Confidence            33799999999   999999999999999999999999875       11  5689999999988889999999999999


Q ss_pred             hhcccc
Q 039635          114 CAATLI  119 (579)
Q Consensus       114 Ca~~~~  119 (579)
                      ||..|.
T Consensus        75 CA~~P~   80 (89)
T d1v5na_          75 CALNED   80 (89)
T ss_dssp             HHHCSS
T ss_pred             HcCCCc
Confidence            999876

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=2.1e-16  Score=129.96  Aligned_cols=78  Identities=28%  Similarity=0.516  Sum_probs=70.0

Q ss_pred             CCCcEEeCCCCCccCccccCCCceeecCCCCCCeeEEecccCCceeecccccccccCceEEeCCCCcccccCCccCCCcc
Q 039635          156 LGPSYGCLPCKFYIHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKI  235 (579)
Q Consensus       156 ~~~~Y~C~~C~f~~H~~C~~~P~~i~hp~Hp~H~L~L~~~~~~~~~C~~C~~~~~~~~~Y~C~~C~f~lh~~Ca~~p~~~  235 (579)
                      .|..|+|.+|++.+|+.|+.+|++|+|++||+|+|+|..  ....+|++|++.+. +|+|+|..|||+||+.||..|+.+
T Consensus         6 ~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~--~~~~~C~~C~~~~~-g~~Y~C~~C~f~LH~~CA~~P~~~   82 (89)
T d1v5na_           6 SGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR--VQVYTCDKCEEEGT-IWSYHCDECDFDLHAKCALNEDTK   82 (89)
T ss_dssp             CCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEEC--CSSCCCTTTSCCCC-SCEEECTTTCCCCCHHHHHCSSCS
T ss_pred             CchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEec--CCCCEeCCCCCCcC-CcEeEeccCCCEecHHHcCCCccc
Confidence            566799999999999999999999999999999999964  23468999999886 699999999999999999998865


Q ss_pred             c
Q 039635          236 R  236 (579)
Q Consensus       236 ~  236 (579)
                      .
T Consensus        83 ~   83 (89)
T d1v5na_          83 E   83 (89)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.00093  Score=47.70  Aligned_cols=42  Identities=21%  Similarity=0.715  Sum_probs=34.2

Q ss_pred             cccccccccCCCCCeeecCCC-CcccChhhhccccchhccccCeeeccCCCCCCEEcc
Q 039635           86 EFGCDFCDQSHKGYKYCCDLC-NFQIGFACAATLIEHYRVQEHIIEHFSHRHPLIRLE  142 (579)
Q Consensus        86 ~~~C~~C~~~~~g~~Y~C~~C-~f~lh~~Ca~~~~~~~~~~~~~I~hp~H~H~L~~~~  142 (579)
                      -..|++|++.+ +.+|+|..| ||+|...|....              .|+|+|....
T Consensus         6 ~~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~~~~--------------~H~H~m~k~~   48 (52)
T d1tota1           6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTK--------------SHTHKMVKWG   48 (52)
T ss_dssp             CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHH--------------CCCSSEEEEC
T ss_pred             EEECcCCCCcC-CCceECCCCCCcccHHHHhcCC--------------CcCCCeEEec
Confidence            45799999887 778999999 899999997642              3778887653

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=96.02  E-value=0.0027  Score=47.61  Aligned_cols=45  Identities=18%  Similarity=0.492  Sum_probs=36.4

Q ss_pred             cCCCCCCEEccCC-cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          132 FSHRHPLIRLEVD-EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       132 p~H~H~L~~~~~~-~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      |...|.|...... +..|+.|++.+.|   .+|+|..|++.+|+.|+..
T Consensus         5 p~~~H~F~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~   53 (66)
T d1tbna_           5 PRNKHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRS   53 (66)
T ss_dssp             CCCSCCEEECCSSSCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTT
T ss_pred             CCCCCceEEEeCCCCcCCcCCCCcccCcccCccccCcccCeEChHHhcc
Confidence            3456777776544 7789999998855   4799999999999999974

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0026  Score=45.39  Aligned_cols=41  Identities=27%  Similarity=0.686  Sum_probs=33.9

Q ss_pred             CCCCEEccCC-cccccccccccCCCcEEeCCCCCccCccccCC
Q 039635          135 RHPLIRLEVD-EEWCRICRNNILGPSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       135 ~H~L~~~~~~-~~~C~~C~~~~~~~~Y~C~~C~f~~H~~C~~~  176 (579)
                      .|.+...... +..|+.|++.+. .+|+|..|++.+|+.|+..
T Consensus         3 ~H~F~~~~f~~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~   44 (52)
T d1faqa_           3 THNFARKTFLKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTK   44 (52)
T ss_dssp             CCCCEEECCSSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred             ceEEEEeeCCCCcCCccCCCccc-cCCCcCCCCChhhhhhhcc
Confidence            4667665544 789999999875 5799999999999999974

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0024  Score=45.07  Aligned_cols=41  Identities=22%  Similarity=0.568  Sum_probs=31.8

Q ss_pred             CCCEEccCC-cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          136 HPLIRLEVD-EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       136 H~L~~~~~~-~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      |.+...... +..|+.|++.|.|   .+|+|.+|++..|+.|.+.
T Consensus         1 H~F~~~~~~~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~   45 (50)
T d1ptqa_           1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   45 (50)
T ss_dssp             CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CceEEecCCCCcCCcccCCcccCcccCcEECCCCCCeeChhHccc
Confidence            344443333 7889999998855   5799999999999999974

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.52  E-value=0.0051  Score=43.33  Aligned_cols=34  Identities=21%  Similarity=0.518  Sum_probs=29.0

Q ss_pred             cccccccccCCCCC---eeecCCCCcccChhhhcccc
Q 039635           86 EFGCDFCDQSHKGY---KYCCDLCNFQIGFACAATLI  119 (579)
Q Consensus        86 ~~~C~~C~~~~~g~---~Y~C~~C~f~lh~~Ca~~~~  119 (579)
                      .-.|++|++.+.|.   .|+|+.|++.+|.+|+...+
T Consensus        11 ~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~   47 (50)
T d1ptqa_          11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVA   47 (50)
T ss_dssp             CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTSC
T ss_pred             CcCCcccCCcccCcccCcEECCCCCCeeChhHccccc
Confidence            45799999999774   39999999999999988643

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=95.43  E-value=0.0068  Score=45.31  Aligned_cols=46  Identities=24%  Similarity=0.411  Sum_probs=37.4

Q ss_pred             ccCcCCcceeecCC--CCCCccccCCCCCC---cEEcCCCCCCCccccccccCC
Q 039635            8 HMHVHQHPFSCGSR--PERCFACLGEISGN---FYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus         8 ~~p~H~H~l~~~~~--~~~C~~C~~~~~~~---~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      +.|.-.|.|...+.  +..|+.|.+.++|.   +|.|..|++   .+|++|++.
T Consensus         3 d~p~~~H~F~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~---~~H~~C~~~   53 (66)
T d1tbna_           3 DDPRNKHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEM---NVHRRCVRS   53 (66)
T ss_dssp             CCCCCSCCEEECCSSSCCBCSSSCCBCCTTSSSCEEETTTCC---EECTTTTTT
T ss_pred             CCCCCCCceEEEeCCCCcCCcCCCCcccCcccCccccCcccC---eEChHHhcc
Confidence            34667788888765  77899997766653   799999999   999999975

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0045  Score=46.82  Aligned_cols=47  Identities=28%  Similarity=0.570  Sum_probs=35.8

Q ss_pred             cccccccccC-CCCCeeecCCC----CcccChhhhccccchhccccCeeeccCC--CCCCEEcc
Q 039635           86 EFGCDFCDQS-HKGYKYCCDLC----NFQIGFACAATLIEHYRVQEHIIEHFSH--RHPLIRLE  142 (579)
Q Consensus        86 ~~~C~~C~~~-~~g~~Y~C~~C----~f~lh~~Ca~~~~~~~~~~~~~I~hp~H--~H~L~~~~  142 (579)
                      ...|++|++. +.|.+|+|..|    ||+|...|.....          ....|  .|+|....
T Consensus        14 ~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~----------~~~~H~~~H~~~~I~   67 (69)
T d2fc7a1          14 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH----------ETDIHKEDHQLEPIY   67 (69)
T ss_dssp             SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC----------CCSSCCSSSCEEEEC
T ss_pred             CeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcc----------cCCCCCCCCCEEEee
Confidence            4689999987 67889999999    8999999987643          12234  48877653

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0054  Score=43.60  Aligned_cols=40  Identities=23%  Similarity=0.460  Sum_probs=33.5

Q ss_pred             CcceeecCC--CCCCccccCCCCCCcEEcCCCCCCCccccccccCC
Q 039635           13 QHPFSCGSR--PERCFACLGEISGNFYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus        13 ~H~l~~~~~--~~~C~~C~~~~~~~~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      .|.+...+.  +..|+.|.+.++. +|.|..|++   .+|++|.+.
T Consensus         3 ~H~F~~~~f~~~~~C~~C~~~i~~-g~~C~~C~~---~~H~~C~~~   44 (52)
T d1faqa_           3 THNFARKTFLKLAFCDICQKFLLN-GFRCQTCGY---KFHEHCSTK   44 (52)
T ss_dssp             CCCCEEECCSSCEECTTSSSEECS-EEECTTTTC---CBCSTTSSS
T ss_pred             ceEEEEeeCCCCcCCccCCCcccc-CCCcCCCCC---hhhhhhhcc
Confidence            466666544  7899999888887 899999999   999999975

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.15  E-value=0.0077  Score=42.26  Aligned_cols=39  Identities=28%  Similarity=0.496  Sum_probs=30.5

Q ss_pred             cceeecCC-CCCCccccCCCCCCcEEcCCCCCCCccccccccCC
Q 039635           14 HPFSCGSR-PERCFACLGEISGNFYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus        14 H~l~~~~~-~~~C~~C~~~~~~~~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      |.+...+. +.+|+.|.+.++. +|.|..|++   ..|++|++.
T Consensus         5 H~F~~~~~~~~tC~~C~~~l~q-g~~C~~C~~---~~Hk~C~~~   44 (49)
T d1kbea_           5 HRFSTKSWLSQVCNVCQKSMIF-GVKCKHCRL---KCHNKCTKE   44 (49)
T ss_dssp             CCEEEECCSSCCCSSSCCSSCC-EEEETTTTE---EESSSCTTT
T ss_pred             cEEeecCcCCCCchhhchhhhC-cCCcCCCCC---hHhHhhccc
Confidence            44443333 3469999888886 999999999   999999974

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.04  E-value=0.0075  Score=42.32  Aligned_cols=30  Identities=23%  Similarity=0.789  Sum_probs=26.5

Q ss_pred             ccccccccccCCCcEEeCCCCCccCccccCC
Q 039635          146 EWCRICRNNILGPSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       146 ~~C~~C~~~~~~~~Y~C~~C~f~~H~~C~~~  176 (579)
                      ..|+.|++.+. .+|+|.+|++..|+.|+..
T Consensus        15 ~tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~   44 (49)
T d1kbea_          15 QVCNVCQKSMI-FGVKCKHCRLKCHNKCTKE   44 (49)
T ss_dssp             CCCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred             CCchhhchhhh-CcCCcCCCCChHhHhhccc
Confidence            35999999885 6899999999999999975

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.01  Score=43.66  Aligned_cols=34  Identities=18%  Similarity=0.521  Sum_probs=29.1

Q ss_pred             cccccccccCCCCC---eeecCCCCcccChhhhcccc
Q 039635           86 EFGCDFCDQSHKGY---KYCCDLCNFQIGFACAATLI  119 (579)
Q Consensus        86 ~~~C~~C~~~~~g~---~Y~C~~C~f~lh~~Ca~~~~  119 (579)
                      .-.|++|++.+.|.   .|+|+.|++.+|..|+...+
T Consensus        15 pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~   51 (62)
T d1xa6a3          15 PHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVP   51 (62)
T ss_dssp             CCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTSC
T ss_pred             CCCCcccCccccccccCeEEcCCCCchhhHHHHhhCC
Confidence            34799999999764   39999999999999988754

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.0095  Score=43.86  Aligned_cols=42  Identities=26%  Similarity=0.689  Sum_probs=33.5

Q ss_pred             CCCCEEccCC-cccccccccccCC---CcEEeCCCCCccCccccCC
Q 039635          135 RHPLIRLEVD-EEWCRICRNNILG---PSYGCLPCKFYIHNSCSEL  176 (579)
Q Consensus       135 ~H~L~~~~~~-~~~C~~C~~~~~~---~~Y~C~~C~f~~H~~C~~~  176 (579)
                      .|.+...... +..|+.|++.+.|   .+|+|..|++..|+.|++.
T Consensus         4 ~H~F~~~~~~~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~   49 (62)
T d1xa6a3           4 THNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKH   49 (62)
T ss_dssp             CCCCCEECCSSCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTT
T ss_pred             CCEEEEeeCCCCCCCcccCccccccccCeEEcCCCCchhhHHHHhh
Confidence            4666655444 7789999998754   5799999999999999974

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0071  Score=47.60  Aligned_cols=44  Identities=23%  Similarity=0.591  Sum_probs=34.8

Q ss_pred             cccccccccc-cCCCcEEeCCC-CCccCccccCCCceeecCCCCCCeeEEec
Q 039635          145 EEWCRICRNN-ILGPSYGCLPC-KFYIHNSCSELPQQVLHPFHAHHSLKLQN  194 (579)
Q Consensus       145 ~~~C~~C~~~-~~~~~Y~C~~C-~f~~H~~C~~~P~~i~hp~Hp~H~L~L~~  194 (579)
                      ...|++|+.. |.|.+|+|..| ||+|...|...      ..|+.|++.+..
T Consensus        24 ~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~~------~~h~~H~f~~~~   69 (85)
T d2dipa1          24 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS------YCHLSHTFTFRE   69 (85)
T ss_dssp             CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT------TSGGGSCEEECC
T ss_pred             CeECCCCCCCCcCcceEEcCCCCCccchHHHHCc------CCCCCCCcceec
Confidence            4689999764 89999999999 99999999752      334567787643

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.025  Score=42.55  Aligned_cols=47  Identities=21%  Similarity=0.528  Sum_probs=36.0

Q ss_pred             CCcccccccccccCCCCCceeecCC----CceecccccCCCcccccccC--CCCeEEE
Q 039635          377 DVPCYACGKVLIQDQNHPTYGCDPC----RIYLHKTCAQMPRQIQHVLH--RHPLTVT  428 (579)
Q Consensus       377 ~~~C~aC~~~i~~~~~~~~Y~C~~C----~f~lH~~Ca~lP~~~~h~~H--~h~L~l~  428 (579)
                      .+.|++|++...   .|..|+|.+|    ||.|..+|...+...  ..|  .|++.-.
T Consensus        14 ~~~Cd~C~~~pi---~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~--~~H~~~H~~~~I   66 (69)
T d2fc7a1          14 GFKCDNCGIEPI---QGVRWHCQDCPPEMSLDFCDSCSDCLHET--DIHKEDHQLEPI   66 (69)
T ss_dssp             SCCCSSSCCSSE---ESCEEEESSSCSSSCCEEEGGGTTCCCCC--SSCCSSSCEEEE
T ss_pred             CeEcCCCCCcCc---CCcccCCCCCCCCCCccchHHhhcCcccC--CCCCCCCCEEEe
Confidence            689999998632   7999999999    899999998777532  234  3676543

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.016  Score=45.49  Aligned_cols=45  Identities=24%  Similarity=0.628  Sum_probs=34.4

Q ss_pred             CCccccccc-ccccCCCCCceeecCC-CceecccccCCCcccccccCCCCeEEEec
Q 039635          377 DVPCYACGK-VLIQDQNHPTYGCDPC-RIYLHKTCAQMPRQIQHVLHRHPLTVTTN  430 (579)
Q Consensus       377 ~~~C~aC~~-~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~~~~h~~H~h~L~l~~~  430 (579)
                      .++|++|++ +|    .|..|.|.+| ||.|.+.|..-.   .|.  .|++.+...
T Consensus        24 ~v~Cd~C~~~~i----~G~Ry~C~~C~dyDLC~~C~~~~---~h~--~H~f~~~~~   70 (85)
T d2dipa1          24 GIPCNNCKQFPI----EGKCYKCTECIEYHLCQECFDSY---CHL--SHTFTFREK   70 (85)
T ss_dssp             CCCCSSSCCSSC----CSCEEEESSSSSCEEEHHHHHTT---SGG--GSCEEECCS
T ss_pred             CeECCCCCCCCc----CcceEEcCCCCCccchHHHHCcC---CCC--CCCcceecC
Confidence            679999987 56    7999999999 999999996421   222  467766554

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.51  E-value=0.011  Score=41.83  Aligned_cols=41  Identities=20%  Similarity=0.431  Sum_probs=31.9

Q ss_pred             CCcccccccccccCCCCCceeecCC-CceecccccCCCcccccccCCCCeEEE
Q 039635          377 DVPCYACGKVLIQDQNHPTYGCDPC-RIYLHKTCAQMPRQIQHVLHRHPLTVT  428 (579)
Q Consensus       377 ~~~C~aC~~~i~~~~~~~~Y~C~~C-~f~lH~~Ca~lP~~~~h~~H~h~L~l~  428 (579)
                      -++|++|.+.|     +..|+|.+| ||.|.+.|-.-      ..|+|+|.-.
T Consensus         6 ~~tCd~C~~~i-----~~Ry~C~~C~DfDLC~~C~~~------~~H~H~m~k~   47 (52)
T d1tota1           6 VYTCNECKHHV-----ETRWHCTVCEDYDLCINCYNT------KSHTHKMVKW   47 (52)
T ss_dssp             CEEETTTTEEE-----SSEEEESSSSSCEECHHHHHH------HCCCSSEEEE
T ss_pred             EEECcCCCCcC-----CCceECCCCCCcccHHHHhcC------CCcCCCeEEe
Confidence            46799999876     358999999 99999999632      3567887643

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.042  Score=42.87  Aligned_cols=42  Identities=24%  Similarity=0.514  Sum_probs=32.9

Q ss_pred             CCcceeecCC--CCCCccccCCCCCC----cEEcCCCCCCCccccccccCC
Q 039635           12 HQHPFSCGSR--PERCFACLGEISGN----FYICGHCDSDSPLFHQSCAEL   56 (579)
Q Consensus        12 H~H~l~~~~~--~~~C~~C~~~~~~~----~Y~C~~C~~~~~~~Hk~C~~~   56 (579)
                      .+|.+...+.  +.+|+.|.+.+++.    +|.|..|++   ..|++|.+.
T Consensus        26 ~~H~w~~~n~~~~~~C~~C~~~i~~~~~~qg~~C~~C~~---~~H~~C~~~   73 (84)
T d1r79a_          26 MPHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKA---MVHTSCKES   73 (84)
T ss_dssp             BCCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCC---EECHHHHHH
T ss_pred             CCceEEeCCCCCCCCCcccCcccCCccccCcEecCcCCc---hhhhhhcCC
Confidence            3477777654  77999997665432    699999999   999999864

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.037  Score=43.22  Aligned_cols=41  Identities=27%  Similarity=0.623  Sum_probs=32.8

Q ss_pred             CCCCEEccCC-cccccccccccCC----CcEEeCCCCCccCccccC
Q 039635          135 RHPLIRLEVD-EEWCRICRNNILG----PSYGCLPCKFYIHNSCSE  175 (579)
Q Consensus       135 ~H~L~~~~~~-~~~C~~C~~~~~~----~~Y~C~~C~f~~H~~C~~  175 (579)
                      .|.++..... +.+|+.|++.+.+    .+|+|..|++.+|+.|.+
T Consensus        27 ~H~w~~~n~~~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~   72 (84)
T d1r79a_          27 PHQWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE   72 (84)
T ss_dssp             CCCEEESCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred             CceEEeCCCCCCCCCcccCcccCCccccCcEecCcCCchhhhhhcC
Confidence            4666654433 7899999998743    479999999999999986

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.87  E-value=0.12  Score=35.88  Aligned_cols=32  Identities=28%  Similarity=0.734  Sum_probs=24.6

Q ss_pred             ccccCcCCCCCCceeeeccCCCceecCCCCCCCCC
Q 039635          255 TCQACSFDTKPGAFFVRCVECDFKFHVQCGPASPP  289 (579)
Q Consensus       255 ~C~~C~~~~~~~~y~Y~C~~C~f~lH~~Ca~~~lP  289 (579)
                      +|.+|++..+..... .|..|+-.+|..|+  +.|
T Consensus         2 ~C~vC~~~~~~~~~i-~Cd~C~~~~H~~C~--~p~   33 (51)
T d1f62a_           2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCL--RPA   33 (51)
T ss_dssp             CCTTTCCSSCCSCCE-ECTTTCCEECHHHH--CTT
T ss_pred             CCcCcCCCCCCCCEE-EcCCCCCCCCCCCC--CCC
Confidence            688998876554333 49999999999999  544

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.45  E-value=0.28  Score=35.59  Aligned_cols=56  Identities=21%  Similarity=0.582  Sum_probs=38.0

Q ss_pred             CccccccCcCCCCCC-ceeeeccCCCceecCCCCCCCCCCeeecccCCceeeeecCCCcccccccCcccccccccccCC
Q 039635          252 GTTTCQACSFDTKPG-AFFVRCVECDFKFHVQCGPASPPPIVEHIHHGHSLTLTLPTDSFVKDKFDLFYCDACKEEIDP  329 (579)
Q Consensus       252 ~~~~C~~C~~~~~~~-~y~Y~C~~C~f~lH~~Ca~~~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~~C~~~~~~  329 (579)
                      .+..|.+|++..+.. .++ .|..|+..+|..|+  .++...                   ......|.|..|.++..+
T Consensus         5 ~~~~C~~C~~~~~~~~~~I-~Cd~C~~w~H~~C~--~~~~~~-------------------~~~~~~w~C~~C~~~~~p   61 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWI-CCDLCEMWFHGKCV--KITPAR-------------------AEHIKQYKCPSCSNKSGP   61 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEE-ECSSSCCEEETTTT--TCCTTG-------------------GGGCSSCCCHHHHTTTCS
T ss_pred             CCCcCcCcCCCCCCCCCEE-EcCCCCccCCcccC--CcChHH-------------------CCCCCeEECcCCcCcCCC
Confidence            456899999865443 343 69999999999999  544321                   011146889999876443

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.84  E-value=0.11  Score=36.08  Aligned_cols=40  Identities=20%  Similarity=0.657  Sum_probs=30.4

Q ss_pred             ccccccccCCcceEEEcCCCCCccccccccc--ccccccEEee
Q 039635          536 CDVCEEERDQQERVYYCEECDYIADFMCVIE--VTKPTDYFLE  576 (579)
Q Consensus       536 C~~Ce~~~~~~~~~y~C~~C~~~lh~~C~~~--~~~p~~~~~~  576 (579)
                      |.+|++..++. .+..|+.|+-..|++|+--  ...|.+.|+.
T Consensus         3 C~vC~~~~~~~-~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C   44 (51)
T d1f62a_           3 CKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQC   44 (51)
T ss_dssp             CTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSC
T ss_pred             CcCcCCCCCCC-CEEEcCCCCCCCCCCCCCCCCCcCCCCCEEC
Confidence            88998765544 5678999999999999844  3467777765

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.30  E-value=0.35  Score=34.82  Aligned_cols=40  Identities=20%  Similarity=0.543  Sum_probs=29.3

Q ss_pred             cccccccccccCCcceEEEcCCCCCcccccccc--cccccccEEee
Q 039635          533 TQICDVCEEERDQQERVYYCEECDYIADFMCVI--EVTKPTDYFLE  576 (579)
Q Consensus       533 ~~~C~~Ce~~~~~~~~~y~C~~C~~~lh~~C~~--~~~~p~~~~~~  576 (579)
                      ..+|.+|.+.    .-+..|+.|+...|+.|+-  .+..|.+.|..
T Consensus         9 ~~~C~~C~~~----g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C   50 (61)
T d1mm2a_           9 MEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLC   50 (61)
T ss_dssp             CSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCC
T ss_pred             cCCCcCCCCC----CeEEEeCCCCccCchhhcCCCcCcCCCCcEEC
Confidence            3479999853    2467899999999999974  33356667764