Citrus Sinensis ID: 039654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MSGMSSKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGSSSNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNPGFGHGFY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHHcccEEEEEEcccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccccHHHHcHHHHHccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msgmsskkskgrqKVEMvkmpnesnlqvTFSKRRTGLFKKASELCTLCGADIAiivfspgkkvfsfghpCVETIVDryltrnppqisgTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQMRKASQAQcwweapieelnlpQLEQLKMSLEELKKNVGKQAEKMLIqssnppqffagsssnaggmnlpfdpnnnaavfnpnnmmphpgynpgfghgfy
Flexible Loop (DISEMBL)
msgmsskkskgrqkvemvkmpnesnlqvtfSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGSSSNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNPGFGHGFY
Low Complexity Region (SEG)
msgmsskkskgRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGSSSNAGGMNLpfdpnnnaavfnpnnmmpHPGYNPGFGHGFY
Disordered region (IsUnstruct)
*****************************FSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQ*******************AQCWWEAPIEELNL******************************************************************************
Disordered Region (DISOPRED)
*****************VKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLT**********************ELN*******************************WWEAPIEELNLPQLEQLKMSLEEL*****************************************************************
Disordered Region (DISEMBL)
***************EMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGE**********AQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGSSSNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNPGFGHGFY
Disordered Region (DISPRO)
***************EMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPPQISGTMQL**AHRNASVRELNMQLTQVLNQLEIEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQS****************************VFNPNNMMPHPGYNPGFGHGFY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGMSSKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPPQISGTMQLIEAHRxxxxxxxxxxxxxxxxxxxxxxxxxxxxNQMRKASQAQCWWEAPIEELNLPQxxxxxxxxxxxxxxxxxxxxxMLIQSSNPPQFFAGSSSNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNPGFGHGFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q9FKK2	299	Agamous-like MADS-box pro	yes	no	0.928	0.698	0.555	2e-58
Q4PSU4	264	Agamous-like MADS-box pro	no	no	0.688	0.587	0.568	2e-45
Q9M2K8	256	Agamous-like MADS-box pro	no	no	0.524	0.460	0.384	1e-15
Q40704	236	MADS-box transcription fa	yes	no	0.897	0.855	0.305	3e-15
Q39371	256	Floral homeotic protein A	N/A	no	0.302	0.265	0.507	4e-15
Q5K4R0	246	MADS-box transcription fa	yes	no	0.546	0.5	0.337	5e-15
Q9FUY6	265	MADS-box protein JOINTLES	N/A	no	0.622	0.528	0.327	6e-15
Q9FVC1	240	MADS-box protein SVP OS=A	no	no	0.537	0.504	0.372	7e-15
Q944S9	224	MADS-box transcription fa	no	no	0.671	0.674	0.337	1e-14
P29386	252	Agamous-like MADS-box pro	no	no	0.333	0.297	0.463	1e-14

>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/216 (55%), Positives = 155/216 (71%), Gaps = 7/216 (3%)

Query: 7   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66
           KKSKGRQK+EMVKM NESNLQVTFSKRR+GLFKKASELCTLCGA++AI+VFSPG+KVFSF
Sbjct: 3   KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSF 62

Query: 67  GHPCVETIVDRYLTRN--PPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEE 124
           GHP V++++DR++  N  PP     MQL E  RN+ V++LN  LTQVL+QLE EKK+ +E
Sbjct: 63  GHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDE 122

Query: 125 LNQMRKASQAQC-WWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFA 183
           L ++R+ ++A   WWE P+EEL L QLE  K +LE LKK V  +A +     +N P F+ 
Sbjct: 123 LKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFF--QANVPNFYV 180

Query: 184 GSSSN--AGGMNLPFDPNNNAAVFNPNNMMPHPGYN 217
           GSSSN  A G++     N +  +F+   MM    +N
Sbjct: 181 GSSSNNAAFGIDDGSHINPDMDLFSQRRMMDINAFN 216

Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score =  182 bits (462), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/160 (56%), Positives = 122/160 (76%), Gaps = 5/160 (3%)

Query: 8   KSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFG 67
           +S GRQK+ MVK+  ES+ QVTFSKRR GLFKKASELCTLCGA+I IIVFSP KK FSFG
Sbjct: 60  ESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFG 119

Query: 68  HPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQ 127
           HP VE+++DRY++RN   ++ + QL      A+  ELNMQLT +L+++E EKK+G+ + +
Sbjct: 120 HPSVESVLDRYVSRNNMSLAQSQQL--QGSPAASCELNMQLTHILSEVEEEKKKGQAMEE 177

Query: 128 MRKASQAQC---WWEAPIEELNLPQLEQLKMSLEELKKNV 164
           MRK S  +    WWE P+EE+N+ QL+++K +LEEL+K V
Sbjct: 178 MRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

Probable transcription factor. Controls central cell differentiation during female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2K8|AGL18_ARATH Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 7/125 (5%)

Query: 11  GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC 70
           GR ++E+ K+ N ++ QVTFSKRR GL KKA EL  LC A++A+I+FS   K++ F   C
Sbjct: 2   GRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSVC 61

Query: 71  VETIVDRY-----LTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLN--QLEIEKKRGE 123
           +E I+ RY      T +  Q    + +  +H N +V   +  +   L   QL IE+ +G+
Sbjct: 62  MEQILSRYGYTTASTEHKQQREHQLLICASHGNEAVLRNDDSMKGELERLQLAIERLKGK 121

Query: 124 ELNQM 128
           EL  M
Sbjct: 122 ELEGM 126

Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 27/229 (11%)

Query: 11  GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC 70
           GR K+E+ ++ N +N QVTF KRR GL KKA EL  LC A++A+IVFS   +++ + +  
Sbjct: 2   GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 61

Query: 71  VETIVDRYLTRNPPQI-SGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKR---GEELN 126
           V++ V+RY   N     SGT+  + A      ++ + +L Q ++ L+    R   G+ +N
Sbjct: 62  VKSTVERYKKANSDTSNSGTVAEVNAQH---YQQESSKLRQQISSLQNANSRTIVGDSIN 118

Query: 127 QM--RKASQAQCWWEAPIEELNLPQLEQLKMSLEEL-KKNVGKQAEKMLIQSS------- 176
            M  R   Q +   E  I ++   + E L   +E + K+ V  Q + M ++S        
Sbjct: 119 TMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERG 178

Query: 177 -NPPQFF-AGSSSNAGGM-NLPFDPNNNAAVFNPNNMMPHPGYNPGFGH 222
             P     A S+S    M N P+D  N    F   N+M  P +   + H
Sbjct: 179 QQPLNMMGAASTSEYDHMVNNPYDSRN----FLQVNIMQQPQH---YAH 220

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q39371|3AP1_BRAOL Floral homeotic protein APETALA 1 OS=Brassica oleracea GN=AP1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFG-HP 69
          GR +V++ ++ N+ N QVTFSKRR GLFKKA E+  LC A++A++VFS   K+F +   P
Sbjct: 2  GRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDP 61

Query: 70 CVETIVDRY 78
          C+E I++RY
Sbjct: 62 CMEKILERY 70

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica oleracea (taxid: 3712)

>sp|Q5K4R0|MAD47_ORYSJ MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)

Query: 12  RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
           R+++ + ++ N +  QVTFSKRR GLFKKA EL  LC A++ ++VFS   K+F F    +
Sbjct: 22  RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSM 81

Query: 72  ETIVDRY------LTR-NPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEE 124
           E I+DRY      L R  P Q+      ++   +++   L  +L +    L + + RGEE
Sbjct: 82  EQIIDRYNSHSKTLQRAEPSQLD-----LQGEDSSTCARLKEELAET--SLRLRQMRGEE 134

Query: 125 LNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLE 158
           L++                 LN+ QL++L+ SLE
Sbjct: 135 LHR-----------------LNVEQLQELEKSLE 151

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 98/168 (58%), Gaps = 28/168 (16%)

Query: 11  GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC 70
            R+K+++ K+ N +  QVTFSKRR GLFKKA EL  LC AD+A+I+FS   K+F +    
Sbjct: 2   AREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSS 61

Query: 71  VETIVDR--YLTRNPPQI---SGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEEL 125
           ++ I++R    ++N  ++   S  +QL+E   N++   L+ ++++  ++L   + RGEEL
Sbjct: 62  MKQILERRDLHSKNLEKLDQPSLELQLVE---NSNYSRLSKEISEKSHRL--RQMRGEEL 116

Query: 126 NQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEE-LKKNVGKQAEKML 172
                            + LN+ +L+QL+ SLE  L + + ++ +K++
Sbjct: 117 -----------------QGLNIEELQQLERSLETGLSRVIERKGDKIM 147

Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Solanum lycopersicum (taxid: 4081)

>sp|Q9FVC1|SVP_ARATH MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 8/129 (6%)

Query: 11  GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC 70
            R+K+++ K+ N +  QVTFSKRR GLFKKA EL  LC AD+A+I+FS   K+F F    
Sbjct: 2   AREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSS 61

Query: 71  VETIVDRY--LTRNPPQI---SGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRG--- 122
           ++ +++R+   ++N  ++   S  +QL+E   +A + +     +  L Q+  E+ +G   
Sbjct: 62  MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDI 121

Query: 123 EELNQMRKA 131
           EEL Q+ KA
Sbjct: 122 EELQQLEKA 130

Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 15/166 (9%)

Query: 11  GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC 70
           GR K+E+ ++ N +N QVT+SKRRTG+ KKA EL  LC A +AII+FS   K   F  P 
Sbjct: 2   GRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPS 61

Query: 71  VET--IVDRYLTRNPPQISGTMQLIEAHRN-----ASVRELNMQLTQVLNQLEIEKKRGE 123
            +   I DRY      Q  GT   IE + N     + ++++N  L   + Q   E   G 
Sbjct: 62  TDIKGIFDRY-----QQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGL 116

Query: 124 ELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAE 169
           E +++R   Q     +A ++E+   +   +    E  KK V    E
Sbjct: 117 EFDELRGLEQN---VDAALKEVRHRKYHVITTQTETYKKKVKHSYE 159

Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS4.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 7/82 (8%)

Query: 11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC 70
          GR +VEM ++ N+ N QVTFSKRR GL KKA EL  LC A++A+I+FS   K++ FG   
Sbjct: 2  GRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVG 61

Query: 71 VETIVDRY-------LTRNPPQ 85
          +E+ ++RY       L+ N P+
Sbjct: 62 IESTIERYNRCYNCSLSNNKPE 83

Probable transcription factor. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
224103797	216	predicted protein [Populus trichocarpa]	0.951	0.990	0.733	2e-86
255562154	217	mads box protein, putative [Ricinus comm	0.955	0.990	0.710	3e-83
449465111	228	PREDICTED: agamous-like MADS-box protein	0.946	0.934	0.665	5e-80
225429167	213	PREDICTED: agamous-like MADS-box protein	0.915	0.967	0.663	6e-77
224140743	244	predicted protein [Populus trichocarpa]	0.973	0.897	0.574	4e-74
297736394	224	unnamed protein product [Vitis vinifera]	0.911	0.915	0.662	1e-73
225429169	212	PREDICTED: agamous-like MADS-box protein	0.911	0.966	0.662	1e-73
225429159	214	PREDICTED: agamous-like MADS-box protein	0.937	0.985	0.622	9e-72
225425096	212	PREDICTED: agamous-like MADS-box protein	0.924	0.981	0.621	4e-71
225429161	214	PREDICTED: agamous-like MADS-box protein	0.951	1.0	0.608	2e-68

>gi|224103797|ref|XP_002313197.1| predicted protein [Populus trichocarpa] gi|222849605|gb|EEE87152.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/221 (73%), Positives = 187/221 (84%), Gaps = 7/221 (3%)

Query: 6   SKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFS 65
           ++KS+GRQKVEMVKM  ESNLQVTFSKRR+GLFKKASEL TLCGA+IAIIVFSPG +VFS
Sbjct: 2   ARKSRGRQKVEMVKMSKESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGNRVFS 61

Query: 66  FGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEEL 125
           FGHP VET++DRY TRNPPQ SGTMQLIEAHRNA+VRELNMQLTQV+NQ EIEKKRGEEL
Sbjct: 62  FGHPGVETVIDRYFTRNPPQNSGTMQLIEAHRNATVRELNMQLTQVVNQFEIEKKRGEEL 121

Query: 126 NQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGS 185
           +QMRKA Q+QCWWEAP+EEL LPQ+EQLK+SLE LK NV KQA+K+LI++  PPQFFA S
Sbjct: 122 SQMRKA-QSQCWWEAPVEELTLPQIEQLKVSLEGLKMNVTKQAQKLLIENPGPPQFFASS 180

Query: 186 SSNAGGMNLPFDPNNNAAVFNPNNMMPHPGY-NPGFGHGFY 225
           SS  GG+  P+D       FNPN ++P   Y NPG+  GF+
Sbjct: 181 SS--GGI-FPYD--RKVGGFNPNMVLPQYDYNNPGYRRGFF 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562154|ref|XP_002522085.1| mads box protein, putative [Ricinus communis] gi|223538684|gb|EEF40285.1| mads box protein, putative [Ricinus communis]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/221 (71%), Positives = 182/221 (82%), Gaps = 6/221 (2%)

Query: 6   SKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFS 65
           +K+SKGRQK++MVKMPNESNLQVTFSKRR+GLFKKASEL TLCGA+IAIIVFSPGKKVFS
Sbjct: 2   AKRSKGRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFS 61

Query: 66  FGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEEL 125
           FGHP VE ++DR+L+RNPPQ S TMQLIEAHRNASVRELN QLTQVL QLE+E+KRGEEL
Sbjct: 62  FGHPGVEVVIDRFLSRNPPQNSPTMQLIEAHRNASVRELNAQLTQVLTQLEMERKRGEEL 121

Query: 126 NQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGS 185
           NQMRK  Q +CWWEAPI++L +PQLEQL+MSLE+LKKNV  QA+K+LIQ++   QFFA S
Sbjct: 122 NQMRKTGQNRCWWEAPIDDLTMPQLEQLRMSLEQLKKNVAMQADKLLIQNAQSQQFFASS 181

Query: 186 SSNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNP-GFGHGFY 225
           S+            NN  +FN  NM   PGYN  G+G GFY
Sbjct: 182 STAPPPPL-----PNNNFMFNIPNMGTLPGYNNFGYGRGFY 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465111|ref|XP_004150272.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus] gi|449484412|ref|XP_004156875.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 155/233 (66%), Positives = 187/233 (80%), Gaps = 20/233 (8%)

Query: 7   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61

Query: 67  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELN 126
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQVLNQLE+E+KRGEELN
Sbjct: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELN 121

Query: 127 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSS---NPP---- 179
           ++RKASQAQCWWE PIEE+ + QLEQLK SL+ELKKNV +QA+++LIQ+S   NPP    
Sbjct: 122 KLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLI 181

Query: 180 ---QFFAGSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG-FG-HGFY 225
              Q    +S+   G      PN    +F  +P N++ H  +N G +G  GF+
Sbjct: 182 FPTQIPTQTSTTTNG------PNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429167|ref|XP_002271109.1| PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera] gi|297736393|emb|CBI25116.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 144/217 (66%), Positives = 173/217 (79%), Gaps = 11/217 (5%)

Query: 7   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66
           +KSKGRQ+VEM KM  ESNLQVTFSKRR+GLFKKASELCTLCG +IAI+VFSPGKKV+SF
Sbjct: 5   RKSKGRQRVEMAKMTKESNLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPGKKVYSF 64

Query: 67  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELN 126
           GHPCVE+I+DR+LTRNP   S  +QL EAHR+A+VR+LN+QLTQVLNQLEIEKKRGE L 
Sbjct: 65  GHPCVESIIDRFLTRNPLPNSSALQLFEAHRSANVRDLNLQLTQVLNQLEIEKKRGEALT 124

Query: 127 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGSS 186
           QMRKASQAQCWW A IEEL+  +LE LK+SLE LKKNV  Q +K++I++SNPP FF    
Sbjct: 125 QMRKASQAQCWWAASIEELSFERLELLKVSLENLKKNVALQVDKLMIEASNPPTFFP--- 181

Query: 187 SNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNPGFGHG 223
           SN+ G  +P+D  +  A F P +      Y+ G+G G
Sbjct: 182 SNSVGAVVPYD--SQVAGFGPRS------YDFGYGGG 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140743|ref|XP_002323738.1| predicted protein [Populus trichocarpa] gi|222866740|gb|EEF03871.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 139/242 (57%), Positives = 179/242 (73%), Gaps = 23/242 (9%)

Query: 7   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66
           +KSKGRQK+EMVK+PNESNL VTFSKRR+GLFKKASELCTLCGA+++IIVFSPGKKVFSF
Sbjct: 3   RKSKGRQKLEMVKIPNESNLMVTFSKRRSGLFKKASELCTLCGAEVSIIVFSPGKKVFSF 62

Query: 67  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELN 126
           GHP VE +++RYL+ N PQ SG   LIEAHRNA V ELNMQLTQV NQLE+EKKRGEEL+
Sbjct: 63  GHPSVEKVMERYLSGNIPQTSGAFHLIEAHRNARVHELNMQLTQVANQLEVEKKRGEELD 122

Query: 127 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGSS 186
           +MRKASQ++ WWE P++EL+L QL+QL+ +L++LK++V + A+++LIQ+S P  F A + 
Sbjct: 123 RMRKASQSRNWWEKPLQELDLAQLQQLRAALQDLKQDVTRHAKQILIQNSAPQPFIAANP 182

Query: 187 SNAGGM-----------------------NLPFDPNNNAAVFNPNNMMPHPGYNPGFGHG 223
           S +G                           PF+ N  A+ FN ++ MP  GY+ G+G  
Sbjct: 183 STSGNHLFDTRNTGFISNMTVPPFNTNMSGTPFNTNMTASPFNASSAMPPFGYSLGYGTS 242

Query: 224 FY 225
           F+
Sbjct: 243 FF 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736394|emb|CBI25117.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 143/216 (66%), Positives = 171/216 (79%), Gaps = 11/216 (5%)

Query: 6   SKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFS 65
           ++KSKGRQKVEM KM  ESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKK++S
Sbjct: 4   TRKSKGRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKMYS 63

Query: 66  FGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEEL 125
           FGHP VE+I+DR+LT NP   SG +QL EAHR+A+VR+LNMQLTQVLNQLE EKKRGE L
Sbjct: 64  FGHPGVESIIDRFLTGNPLPHSGALQLFEAHRSANVRDLNMQLTQVLNQLEGEKKRGEAL 123

Query: 126 NQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGS 185
            QM+KASQAQ WW APIEEL+  QLE LK+SLE LK+NV   A+K ++++SNP  FF  S
Sbjct: 124 TQMKKASQAQYWWAAPIEELSFEQLELLKVSLENLKRNVEMHADKHMMEASNPLTFFLSS 183

Query: 186 SSNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNPGFG 221
           S  AG   +P+D   + A F+P N      +N G+G
Sbjct: 184 SVGAG---VPYDA--HIAAFDPLN------FNFGYG 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429169|ref|XP_002271290.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 143/216 (66%), Positives = 171/216 (79%), Gaps = 11/216 (5%)

Query: 6   SKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFS 65
           ++KSKGRQKVEM KM  ESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKK++S
Sbjct: 4   TRKSKGRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKMYS 63

Query: 66  FGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEEL 125
           FGHP VE+I+DR+LT NP   SG +QL EAHR+A+VR+LNMQLTQVLNQLE EKKRGE L
Sbjct: 64  FGHPGVESIIDRFLTGNPLPHSGALQLFEAHRSANVRDLNMQLTQVLNQLEGEKKRGEAL 123

Query: 126 NQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGS 185
            QM+KASQAQ WW APIEEL+  QLE LK+SLE LK+NV   A+K ++++SNP  FF  S
Sbjct: 124 TQMKKASQAQYWWAAPIEELSFEQLELLKVSLENLKRNVEMHADKHMMEASNPLTFFLSS 183

Query: 186 SSNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNPGFG 221
           S  AG   +P+D   + A F+P N      +N G+G
Sbjct: 184 SVGAG---VPYDA--HIAAFDPLN------FNFGYG 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429159|ref|XP_002270922.1| PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera] gi|297736388|emb|CBI25111.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (703), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 137/220 (62%), Positives = 169/220 (76%), Gaps = 9/220 (4%)

Query: 5   SSKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVF 64
           + +KSKGRQKVEM KM  ESNLQVTFSKRR+GLFKKASELCTLCGA+ AIIVFSPGKK++
Sbjct: 3   TVRKSKGRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAETAIIVFSPGKKLY 62

Query: 65  SFGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEE 124
           SFGHPCVE+I+DR+L RNP   SG +QL EAHR  +VR LN+QLTQV+NQLE EKKRGE 
Sbjct: 63  SFGHPCVESIIDRFLMRNPLPNSGALQLFEAHRTTNVRNLNVQLTQVVNQLEGEKKRGEA 122

Query: 125 LNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAG 184
           L QM KA + QCWW APIEE +L QLE LK+SLE+L++ V +QA++++I++ NPP FF G
Sbjct: 123 LTQMWKACKPQCWWAAPIEEFSLEQLELLKVSLEDLRRKVARQADELMIEAKNPPAFFPG 182

Query: 185 SSSNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNPGFGHGF 224
              N+ G  +P+D     A F+P +      YN G+G  F
Sbjct: 183 ---NSVGTIMPYDA--QMAGFDPYSH----KYNFGYGGPF 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425096|ref|XP_002272375.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 136/219 (62%), Positives = 167/219 (76%), Gaps = 11/219 (5%)

Query: 7   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66
           +KSKGRQ+VEM KM  ESNLQVTFSKRR+GLFKKASEL TLCGA+ AIIVFSPGKKV+SF
Sbjct: 5   RKSKGRQRVEMTKMAKESNLQVTFSKRRSGLFKKASELSTLCGAETAIIVFSPGKKVYSF 64

Query: 67  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELN 126
           GHP VE+IVDR+LTRNP   +GT+QL EAHR+A++RELNMQLTQVLN+L  EKKR E L 
Sbjct: 65  GHPSVESIVDRFLTRNPLTNAGTLQLFEAHRSANIRELNMQLTQVLNELGAEKKRSEVLE 124

Query: 127 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGSS 186
           +++KASQ QCWW APIE L   QLE LK+SLE+LK NV +QA+ ++ Q++NPP FF   S
Sbjct: 125 KIKKASQTQCWWAAPIEGLGFEQLELLKVSLEQLKANVARQADNLMFQAANPPDFF---S 181

Query: 187 SNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNPGFGHGFY 225
            N+ G  +P D       F+P+      G+N G+G   +
Sbjct: 182 PNSIGAIIPHDA--KIIGFDPH------GFNFGYGGSLF 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429161|ref|XP_002270964.1| PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera] gi|147772544|emb|CAN63001.1| hypothetical protein VITISV_024203 [Vitis vinifera]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/222 (60%), Positives = 170/222 (76%), Gaps = 8/222 (3%)

Query: 4   MSSKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKV 63
           M  K SKGRQK+E+ K+P +++LQVTFSKRR+GLFKKASELCTLCGA++AIIVFSP  KV
Sbjct: 1   MVKKPSKGRQKIEISKIPKKNHLQVTFSKRRSGLFKKASELCTLCGANVAIIVFSPAGKV 60

Query: 64  FSFGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGE 123
           FSFGHP VE+IVDR+ T NP      + LIEAHRNASVRELN+QLTQVLNQLE EKKRGE
Sbjct: 61  FSFGHPDVESIVDRFFTCNPIPEPNGLHLIEAHRNASVRELNLQLTQVLNQLEAEKKRGE 120

Query: 124 ELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFA 183
            L+QMR+ASQ QCWWEAPI EL++P+LEQLK+S+EELKK V  Q +K+L++++NP  F+ 
Sbjct: 121 ILSQMRRASQTQCWWEAPINELSMPELEQLKVSMEELKKVVLSQGDKLLMEAANPSPFYM 180

Query: 184 GSSSNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNPGFGHGFY 225
            + S+A  M   F+     +  + N       +N G+G GF+
Sbjct: 181 INGSSA--MVDHFEIERKPSEIHGN------VHNFGYGQGFF 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2175188	299	AGL62 "AGAMOUS-like 62" [Arabi	0.777	0.585	0.6	1.2e-51
TAIR|locus:2047304	264	AGL61 "AGAMOUS-like 61" [Arabi	0.671	0.571	0.576	4.5e-43
TAIR|locus:2025386	247	AGL28 "AGAMOUS-like 28" [Arabi	0.764	0.696	0.466	2e-33
TAIR|locus:2115420	248	AT4G36590 [Arabidopsis thalian	0.808	0.733	0.428	2e-33
TAIR|locus:2206320	226	AGL23 "AGAMOUS-like 23" [Arabi	0.768	0.765	0.466	4.1e-33
TAIR|locus:2103415	178	AGL91 "AGAMOUS-like 91" [Arabi	0.764	0.966	0.346	4.2e-24
TAIR|locus:2195798	217	AT1G17310 [Arabidopsis thalian	0.333	0.345	0.493	1.1e-22
TAIR|locus:2040819	172	AGL29 "AGAMOUS-like 29" [Arabi	0.715	0.936	0.369	3.4e-22
TAIR|locus:2102990	207	AGL57 "AGAMOUS-like 57" [Arabi	0.68	0.739	0.305	6.3e-21
TAIR|locus:2193922	224	AT1G72350 [Arabidopsis thalian	0.311	0.312	0.527	1.9e-19

TAIR|locus:2175188 AGL62 "AGAMOUS-like 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 108/180 (60%), Positives = 137/180 (76%)

Query:    12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
             RQK+EMVKM NESNLQVTFSKRR+GLFKKASELCTLCGA++AI+VFSPG+KVFSFGHP V
Sbjct:     8 RQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNV 67

Query:    72 ETIVDRYLTRNP--PQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQMR 129
             ++++DR++  NP  P     MQL E  RN+ V++LN  LTQVL+QLE EKK+ +EL ++R
Sbjct:    68 DSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDELKKIR 127

Query:   130 KASQAQC-WWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGSSSN 188
             + ++A   WWE P+EEL L QLE  K +LE LKK V  +A +     +N P F+ GSSSN
Sbjct:   128 EKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFF--QANVPNFYVGSSSN 185

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009960 "endosperm development" evidence=IMP

TAIR|locus:2047304 AGL61 "AGAMOUS-like 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 90/156 (57%), Positives = 120/156 (76%)

Query:    12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
             RQK+ MVK+  ES+ QVTFSKRR GLFKKASELCTLCGA+I IIVFSP KK FSFGHP V
Sbjct:    64 RQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSV 123

Query:    72 ETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQMRKA 131
             E+++DRY++RN   ++ + QL +    AS  ELNMQLT +L+++E EKK+G+ + +MRK 
Sbjct:   124 ESVLDRYVSRNNMSLAQSQQL-QGSPAASC-ELNMQLTHILSEVEEEKKKGQAMEEMRKE 181

Query:   132 SQAQC---WWEAPIEELNLPQLEQLKMSLEELKKNV 164
             S  +    WWE P+EE+N+ QL+++K +LEEL+K V
Sbjct:   182 SVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009559 "embryo sac central cell differentiation" evidence=IMP

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2025386 AGL28 "AGAMOUS-like 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 83/178 (46%), Positives = 113/178 (63%)

Query:    12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
             R+K+E+VKM NESNLQVTFSKRR+GLFKK SELCTLC A+IAIIVFSP  K +SFGHP V
Sbjct:     8 RRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNV 67

Query:    72 ETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQM-RK 130
               ++D  L R   + + T    E+     ++ LN  LT+V+ + E E++  + + Q  R+
Sbjct:    68 NKLLDHSLGR-VIRHNNT-NFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQNERE 125

Query:   131 ASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGSSSN 188
                A+ WW     ELNL Q   +K  LE LKK V ++  ++  ++ N   F+ GSSSN
Sbjct:   126 NKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHHRNLN---FYVGSSSN 180

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2115420 AT4G36590 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 81/189 (42%), Positives = 121/189 (64%)

Query:    12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
             RQK+EM KM NESNLQVTFSKRR GLFKKASELCTL GA+I +IVFSPG KVFSFGHP V
Sbjct:     8 RQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSFGHPSV 67

Query:    72 ETIVDRYLTRNPPQI-----SGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELN 126
             + ++ R+   N         +  +QL+E   + +++ LN  LT+VL   E EK++   L+
Sbjct:    68 QELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKEKQKRMVLD 127

Query:   127 QMRKA-SQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGS 185
              ++++  Q   W+E  +++L++ +  QL  +L+++KK + ++  +   Q +    +F  S
Sbjct:   128 LLKESREQVGNWYEKDVKDLDMNETNQLISALQDVKKKLVREMSQYS-QVNVSQNYFGQS 186

Query:   186 SSNAGGMNL 194
             S   GG N+
Sbjct:   187 SGVIGGGNV 195

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2206320 AGL23 "AGAMOUS-like 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 84/180 (46%), Positives = 118/180 (65%)

Query:    12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
             R+KVE+VKM  ESNLQVTFSKR+ GLFKKASE CTLC A IA+IVFSP  KVFSFGHP V
Sbjct:     8 RRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGHPNV 67

Query:    72 ETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQMRKA 131
             + ++D +  R          L E++    V+ LN   T+V  ++E E+K  +   Q  + 
Sbjct:    68 DVLLDHF--RGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQNERE 125

Query:   132 SQ-AQCWW-EAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGSSSNA 189
             ++ A+ WW ++P+E LNL Q   +   L++LKK V ++A +++ Q++  P F+ GSSSNA
Sbjct:   126 NENAEEWWSKSPLE-LNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTN--PNFYVGSSSNA 182

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2103415 AGL91 "AGAMOUS-like 91" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 62/179 (34%), Positives = 106/179 (59%)

Query:    12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
             R+K++M K+ + +  QVTFSKRR GLFKKASEL TLC A++ I+VFSPG K +SFG P  
Sbjct:     3 RRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKPNF 62

Query:    72 ETIVDRYLTRNPPQISG----TMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQ 127
             + I +R+      +  G    T      +R    +++  +L  +  + E EKK GE+L++
Sbjct:    63 DVIAERFKNEFEEEEEGDSCETSGYSRGNRARQEKKICKRLNSITEEAEAEKKHGEDLHK 122

Query:   128 MRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSNPPQFFAGSS 186
               ++++ Q  +  PIEEL L +L++ +  ++++  + G Q+    +Q+S+   F +  +
Sbjct:   123 WLESAE-QDKFNKPIEELTLEELKEFEAKIKKI--SCGIQSNISHMQASSSLMFLSNDN 178

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2195798 AT1G17310 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 38/77 (49%), Positives = 56/77 (72%)

Query:    12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
             RQK+E+ K+  E+  QVTFSKRR GLFKK++EL  L GA IA+I FS   +++ FGH  V
Sbjct:    49 RQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRFGH--V 106

Query:    72 ETIVDRYLTRNPPQISG 88
             + ++D+YL ++P ++ G
Sbjct:   107 DALIDKYLRKSPVKLEG 123

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2040819 AGL29 "AGAMOUS-like 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 61/165 (36%), Positives = 101/165 (61%)

Query:    12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
             R+K++M  + + +  QVTFSKRRTGLFKKASEL TLC A++ I+VFSPG K FS+G P +
Sbjct:     3 RRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPNL 62

Query:    72 ETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQ-LEIEKKRGEELNQMRK 130
             +++ +R++       SG  +    +R   ++ L+ +L  +LNQ +E EK+RGE+  +  +
Sbjct:    63 DSVAERFMREYDDSDSGDEEKSGNYR-PKLKRLSERL-DLLNQEVEAEKERGEKSQEKLE 120

Query:   131 ASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQS 175
             ++  + + E+ IE L L +L + K  L+ +   +  Q   +   S
Sbjct:   121 SAGDERFKES-IETLTLDELNEYKDRLQTVHGRIEGQVNHLQASS 164

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2102990 AGL57 "AGAMOUS-like 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 48/157 (30%), Positives = 92/157 (58%)

Query:    12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
             +QK+EM K+ N  +  +TFSKR+TG+FKK +EL  +C  ++A ++FS  KK ++F HP +
Sbjct:    15 KQKIEMKKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPYTFAHPSM 74

Query:    72 ETIVDRYLT---RNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQM 128
             + + DR      + P +   T  L+EA++   + +L  ++  +  +L ++ ++ + L + 
Sbjct:    75 KKVADRLKNPSRQEPLERDDTRPLVEAYKKRRLHDLVKKMEALEEELAMDLEKLKLLKES 134

Query:   129 RKASQA-QCWWEAPIEELNLPQLEQLKMSLEELKKNV 164
             R   +  + WW  P E L+  +L+Q   ++ EL+ N+
Sbjct:   135 RNEKKLDKMWWNFPSEGLSAKELQQRYQAMLELRDNL 171

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2193922 AT1G72350 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 38/72 (52%), Positives = 54/72 (75%)

Query:    12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
             RQK+E+ ++  E+  QVTFSKRR+GLFKKA+EL  LCGA I II FS   +++SFG+  V
Sbjct:    44 RQKIEIKEIMLETRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRCDRIYSFGN--V 101

Query:    72 ETIVDRYLTRNP 83
              +++D+YL + P
Sbjct:   102 NSLIDKYLRKAP 113

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40704	MADS3_ORYSJ	No assigned EC number	0.3056	0.8977	0.8559	yes	no
Q9FKK2	AGL62_ARATH	No assigned EC number	0.5555	0.9288	0.6989	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00090813 hypothetical protein (216 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	7e-35
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	1e-29
smart00432	59	smart00432, MADS, MADS domain	4e-29
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	2e-28
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	3e-17
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	0.002

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  118 bits (298), Expect = 7e-35
 Identities = 35/70 (50%), Positives = 49/70 (70%)

Query: 11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC 70
          GR K+E+ ++ N +N QVTFSKRR GL KKA EL  LC A++A+I+FS   K++ F  P 
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 71 VETIVDRYLT 80
          +E I++RY  
Sbjct: 61 MEKIIERYQK 70

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  104 bits (263), Expect = 1e-29
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHP 69
          GR K+E+ ++ N+++ QVTFSKRR GLFKKASEL  LC A++A+IVFSP  K++ F   
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  103 bits (259), Expect = 4e-29
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHP 69
          GR+K+E+ ++ N++N QVTFSKRR GLFKKA EL  LC A++A+IVFSP  K++ F  P
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  102 bits (256), Expect = 2e-28
 Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)

Query: 11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGH-P 69
          GR+K+++ ++ N+    VTFSKRR GLFKKASEL TLCGA++A+IV+SP  K++ F    
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 70 CVETIVDRYLTRNPPQ 85
           VE ++ R+   +  +
Sbjct: 61 EVEGVISRFEVLSALE 76

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 72.4 bits (178), Expect = 3e-17
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 22 NESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66
          N+SN QVTFSKRR G+FKKA EL  LC A++A+I+FS   K++ +
Sbjct: 5  NKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEY 49

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 25/79 (31%), Positives = 43/79 (54%)

Query: 9   SKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGH 68
           S   +K+ +  + N++   VTFSKR+ G+ KKA EL  L G ++ ++V S    V +F  
Sbjct: 80  SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT 139

Query: 69  PCVETIVDRYLTRNPPQIS 87
           P +E++V     ++  Q  
Sbjct: 140 PKLESVVKSLEGKSLIQSP 158

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.93
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.84
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.5
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	98.09
PF15079	205	DUF4546: Domain of unknown function (DUF4546)	80.4

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=6.3e-35  Score=238.72  Aligned_cols=76  Identities=57%  Similarity=0.930  Sum_probs=72.6

Q ss_pred             CCccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcc--hhhhhhhhhcCCCCC
Q 039654           10 KGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC--VETIVDRYLTRNPPQ   85 (225)
Q Consensus        10 mgR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~ps--v~~Vi~Ry~~~~~~~   85 (225)
                      |||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+||+|+  |+.|++||.....+.
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~   78 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPS   78 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhh
Confidence            8999999999999999999999999999999999999999999999999999999999998  999999999865544

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=4.7e-34  Score=199.64  Aligned_cols=72  Identities=49%  Similarity=0.877  Sum_probs=70.2

Q ss_pred             CccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhcCC
Q 039654           11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRN   82 (225)
Q Consensus        11 gR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~~~   82 (225)
                      ||+||+|++|+|+++|++||+|||.||||||+|||+||||+||+|||||+|++|+|++|++++||+||++.+
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~   72 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTS   72 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999754

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=6e-31  Score=186.62  Aligned_cols=72  Identities=49%  Similarity=0.847  Sum_probs=69.3

Q ss_pred             CccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcc-hhhhhhhhhcCC
Q 039654           11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC-VETIVDRYLTRN   82 (225)
Q Consensus        11 gR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~ps-v~~Vi~Ry~~~~   82 (225)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+.|++++ ++.+|++|...+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~   73 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLS   73 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcC
Confidence            799999999999999999999999999999999999999999999999999999998877 999999998754

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=6.5e-31  Score=173.62  Aligned_cols=59  Identities=58%  Similarity=1.001  Sum_probs=58.1

Q ss_pred             CccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCc
Q 039654           11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHP   69 (225)
Q Consensus        11 gR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~p   69 (225)
                      ||+||+|++|+|+++|++||+|||.||||||+||||||||+||+|||||+|++++|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=6.4e-30  Score=169.02  Aligned_cols=59  Identities=56%  Similarity=0.928  Sum_probs=57.6

Q ss_pred             CccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCc
Q 039654           11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHP   69 (225)
Q Consensus        11 gR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~p   69 (225)
                      ||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.93  E-value=1.6e-27  Score=152.56  Aligned_cols=51  Identities=59%  Similarity=0.977  Sum_probs=46.4

Q ss_pred             EeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCC
Q 039654           18 VKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGH   68 (225)
Q Consensus        18 ~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~   68 (225)
                      |+|+|++.|++||+|||.||||||+||||||||+||+|||||+|++|+|++
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            589999999999999999999999999999999999999999999999964

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.84  E-value=4e-22  Score=167.25  Aligned_cols=70  Identities=41%  Similarity=0.653  Sum_probs=66.4

Q ss_pred             CCCCCCccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhh
Q 039654            6 SKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIV   75 (225)
Q Consensus         6 ~~~~mgR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi   75 (225)
                      +|++.||+||+|++|+|+..|.+||||||.||||||+|||||+|.+|-|+|.|.+|.+|+|+.|..+.||
T Consensus        58 ~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i  127 (338)
T KOG0015|consen   58 GKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMI  127 (338)
T ss_pred             CccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccc
Confidence            6899999999999999999999999999999999999999999999999999999999999999765444

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.50  E-value=1.1e-14  Score=127.95  Aligned_cols=69  Identities=35%  Similarity=0.538  Sum_probs=65.5

Q ss_pred             CCCccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhh
Q 039654            9 SKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDR   77 (225)
Q Consensus         9 ~mgR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~R   77 (225)
                      +|||+||.|..|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|..|.++.|+.|+.+.|+.-
T Consensus        80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~  148 (412)
T COG5068          80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS  148 (412)
T ss_pred             ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence            689999999999999999999999999999999999999999999999999999999999987766644

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=98.09  E-value=2.3e-05  Score=57.35  Aligned_cols=41  Identities=27%  Similarity=0.409  Sum_probs=37.8

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 039654          136 CWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSS  176 (225)
Q Consensus       136 ~~w~~~l~~Ls~eEL~~L~~~Le~l~~~V~~r~~~L~~q~~  176 (225)
                      +..|++|++|+++||..|+..|+..+..|+.|+.+++.+..
T Consensus        37 ~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i   77 (100)
T PF01486_consen   37 HLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQI   77 (100)
T ss_pred             ccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            56799999999999999999999999999999999987753

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF15079 DUF4546: Domain of unknown function (DUF4546)

Probab=80.40  E-value=14  Score=29.53  Aligned_cols=63  Identities=21%  Similarity=0.423  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039654           99 ASVRELNMQLTQVLNQLEIEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQS  175 (225)
Q Consensus        99 ~~i~~l~~ql~~l~~~le~ekk~~e~L~~l~k~~~~~~~w~~~l~~Ls~eEL~~L~~~Le~l~~~V~~r~~~L~~q~  175 (225)
                      .-.++|..++..+.++|   +.+.|++.++..           |-|-+.+-|.+|...+.+..+...++++-|+.-+
T Consensus        47 G~T~eLkNeLREVREEL---kEKmeEIKQIKd-----------iMDKDFDKL~EFVEIMKeMQkDMDEKMDvLiNiQ  109 (205)
T PF15079_consen   47 GGTQELKNELREVREEL---KEKMEEIKQIKD-----------IMDKDFDKLHEFVEIMKEMQKDMDEKMDVLINIQ  109 (205)
T ss_pred             cccHHHHHHHHHHHHHH---HHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHHHHhHHHhhhHHhhcc
Confidence            34467777777776665   455566666543           3345678899999999999999999998886433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		2e-12
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		4e-12
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		7e-12
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		1e-10
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-10
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-10
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		1e-07
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		1e-05
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		2e-05

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
          R+K+++ ++ +E N QVTF+KR+ GL KKA EL  LC  +IA+I+F+   K+F +    +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 72 ETIVDRYLTRNPPQISGT-MQLIEA 95
          + ++ +Y   N P  S T   ++EA
Sbjct: 62 DKVLLKYTEYNEPHESRTNSDIVEA 86

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 50/78 (64%)
Query: 12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
          R+K+++ ++ +E N QVTF+KR+ GL KKA EL  L  A+IA+I+F+   K+F +    +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDM 61
Query: 72 ETIVDRYLTRNPPQISGT 89
          + ++ +Y   N P  S T
Sbjct: 62 DKVLLKYTEYNEPHESRT 79

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
          R+K+++ ++ +E N QVTF+KR+ GL KKA EL  LC  +IA+I+F+   K+F +    +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 72 ETIVDRYLTRNPPQ 85
          + ++ +Y   N P 
Sbjct: 62 DKVLLKYTEYNEPH 75

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
          R+K+++ ++ ++ N QVTF+KR+ GL KKA EL  LC  +IA+I+F+   ++F +    +
Sbjct: 3  RKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDM 62
Query: 72 ETIVDRYLTRNPPQISGT 89
          + ++ +Y   + P  S T
Sbjct: 63 DRVLLKYTEYSEPHESRT 80

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
          R+K+++ ++ ++ N QVTF+KR+ GL KKA EL  LC  +IA+I+F+   ++F +    +
Sbjct: 2  RKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDM 61
Query: 72 ETIVDRYLTRNPPQISGT 89
          + ++ +Y   + P  S T
Sbjct: 62 DRVLLKYTEYSEPHESRT 79

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 46/67 (68%)
Query: 12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
          R+K+++ ++ +E N QVTF+KR+ GL KKA EL  LC  +IA+I+F+   K+F +    +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 72 ETIVDRY 78
          + ++ +Y
Sbjct: 62 DKVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCV 71
          R+K+E+  + N++   VTFSKR+ G+ KKA EL  L G  + ++V S    V++F  P  
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 77
Query: 72 ETIVDRYLTRN 82
          E IV +   RN
Sbjct: 78 EPIVTQQEGRN 88

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFG 67
          R K++M  + N+     TFSKR+TG+ KKA EL TL G  + ++V S    V++F 
Sbjct: 12 RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA 67

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 12 RQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFG 67
          R K++M  + N+     TFSKR+TG+ KKA EL TL G  + ++V S    V++F 
Sbjct: 11 RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-37
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	9e-37
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	1e-34
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-26
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	4e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  124 bits (314), Expect = 2e-37
 Identities = 27/81 (33%), Positives = 45/81 (55%)

Query: 5  SSKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVF 64
            KK++GR K++M  + N+     TFSKR+TG+ KKA EL TL G  + ++V S    V+
Sbjct: 5  PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY 64

Query: 65 SFGHPCVETIVDRYLTRNPPQ 85
          +F    ++ ++     +   Q
Sbjct: 65 TFATRKLQPMITSETGKALIQ 85

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  123 bits (311), Expect = 9e-37
 Identities = 27/83 (32%), Positives = 45/83 (54%)

Query: 3  GMSSKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKK 62
              KK++GR K++M  + N+     TFSKR+TG+ KKA EL TL G  + ++V S    
Sbjct: 2  AKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH 61

Query: 63 VFSFGHPCVETIVDRYLTRNPPQ 85
          V++F    ++ ++     +   Q
Sbjct: 62 VYTFATRKLQPMITSETGKALIQ 84

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  118 bits (297), Expect = 1e-34
 Identities = 30/84 (35%), Positives = 48/84 (57%)

Query: 2  SGMSSKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGK 61
          +  ++ + K R+K+E+  + N++   VTFSKR+ G+ KKA EL  L G  + ++V S   
Sbjct: 8  TPTNNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETG 67

Query: 62 KVFSFGHPCVETIVDRYLTRNPPQ 85
           V++F  P  E IV +   RN  Q
Sbjct: 68 LVYTFSTPKFEPIVTQQEGRNLIQ 91

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 96.7 bits (241), Expect = 2e-26
 Identities = 30/77 (38%), Positives = 50/77 (64%)

Query: 11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC 70
          GR+K+++ ++ +E N QVTF+KR+ GL KKA EL  LC  +IA+I+F+   K+F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 71 VETIVDRYLTRNPPQIS 87
          ++ ++ +Y   N P  S
Sbjct: 61 MDKVLLKYTEYNEPHES 77

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 96.0 bits (239), Expect = 4e-26
 Identities = 29/75 (38%), Positives = 49/75 (65%)

Query: 11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC 70
          GR+K+++ ++ +E N QVTF+KR+ GL KKA EL  LC  +IA+I+F+   K+F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 71 VETIVDRYLTRNPPQ 85
          ++ ++ +Y   N P 
Sbjct: 61 MDKVLLKYTEYNEPH 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 5e-06
 Identities = 31/233 (13%), Positives = 72/233 (30%), Gaps = 58/233 (24%)

Query: 14  KVEMVKMPNESNLQVTFSKRRT-GLFKKA---------SELCTLCGADIAIIVFSPGKKV 63
                   +  +  +T +      L  K           E+ T     ++II     + +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII----AESI 337

Query: 64  FSFGHPCVETIVDRYLTRNPPQISGTMQL-IEAHRNASVRELNMQL----------TQVL 112
                  + T  D +   N  +++  ++  +     A  R++  +L          T +L
Sbjct: 338 ----RDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 113 NQLEIEKKRGEE---LNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAE 169
           + +  +  + +    +N++ K S  +   +     +    LE LK+ LE           
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENE-----YALH 446

Query: 170 KMLIQSSNPPQFFAGSSSNAGGMNLPFDPNNNAAVFNPNNMMPHPGYNPGFGH 222
           + ++   N P+               FD ++    +       H G+     H
Sbjct: 447 RSIVDHYNIPK--------------TFDSDDLIPPYLDQYFYSHIGH-----H 480

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1e-38  Score=220.73  Aligned_cols=74  Identities=39%  Similarity=0.758  Sum_probs=70.1

Q ss_pred             CccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhcCCCC
Q 039654           11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPP   84 (225)
Q Consensus        11 gR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~~~~~   84 (225)
                      ||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||+||...++|
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~   74 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999986644

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=3.2e-38  Score=223.39  Aligned_cols=77  Identities=39%  Similarity=0.731  Sum_probs=73.8

Q ss_pred             CccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhcCCCCCCC
Q 039654           11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPPQIS   87 (225)
Q Consensus        11 gR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~~~~~~~~   87 (225)
                      ||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||+||...+++...
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~   77 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHES   77 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCE
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999987766543

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=6.5e-38  Score=222.71  Aligned_cols=76  Identities=34%  Similarity=0.525  Sum_probs=72.8

Q ss_pred             CCCCCCCccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhc
Q 039654            5 SSKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLT   80 (225)
Q Consensus         5 ~~~~~mgR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~   80 (225)
                      .+|++|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||++|..
T Consensus         5 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G   80 (92)
T 1hbx_A            5 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   80 (92)
T ss_dssp             -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred             cCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence            3799999999999999999999999999999999999999999999999999999999999999999999998753

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=1.1e-37  Score=224.25  Aligned_cols=75  Identities=36%  Similarity=0.554  Sum_probs=70.8

Q ss_pred             CCCCCCccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhc
Q 039654            6 SKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLT   80 (225)
Q Consensus         6 ~~~~mgR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~   80 (225)
                      ++++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+++.|+++|..
T Consensus        12 ~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G   86 (100)
T 1mnm_A           12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG   86 (100)
T ss_dssp             ---CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred             CCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999974

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=2.7e-37  Score=223.63  Aligned_cols=74  Identities=35%  Similarity=0.542  Sum_probs=71.9

Q ss_pred             CCCCCCccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhh
Q 039654            6 SKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYL   79 (225)
Q Consensus         6 ~~~~mgR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~   79 (225)
                      +|++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||+++.
T Consensus         5 ~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~   78 (103)
T 1k6o_B            5 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   78 (103)
T ss_dssp             CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHH
T ss_pred             CCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	1e-34
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-33
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	7e-33

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  116 bits (293), Expect = 1e-34
 Identities = 30/76 (39%), Positives = 44/76 (57%)

Query: 10 KGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHP 69
          K R+K+E+  + N++   VTFSKR+ G+ KKA EL  L G  + ++V S    V++F  P
Sbjct: 2  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 61

Query: 70 CVETIVDRYLTRNPPQ 85
            E IV +   RN  Q
Sbjct: 62 KFEPIVTQQEGRNLIQ 77

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 1e-33
 Identities = 25/77 (32%), Positives = 43/77 (55%)

Query: 9  SKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGH 68
          ++GR K++M  + N+     TFSKR+TG+ KKA EL TL G  + ++V S    V++F  
Sbjct: 1  TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 60

Query: 69 PCVETIVDRYLTRNPPQ 85
            ++ ++     +   Q
Sbjct: 61 RKLQPMITSETGKALIQ 77

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 7e-33
 Identities = 27/68 (39%), Positives = 47/68 (69%)

Query: 11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPC 70
          GR+K+++ ++ +E N QVTF+KR+ GL KKA EL  LC  +IA+I+F+   K+F +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 71 VETIVDRY 78
          ++ ++ +Y
Sbjct: 61 MDKVLLKY 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-39  Score=216.67  Aligned_cols=70  Identities=39%  Similarity=0.757  Sum_probs=68.9

Q ss_pred             CccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhc
Q 039654           11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLT   80 (225)
Q Consensus        11 gR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~   80 (225)
                      ||+||+|++|+|+.+|+|||+|||.||||||+|||+||||+||||||||+|++|+|++|++++||+||..
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999974

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-38  Score=215.94  Aligned_cols=72  Identities=33%  Similarity=0.521  Sum_probs=70.3

Q ss_pred             CCCccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhc
Q 039654            9 SKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLT   80 (225)
Q Consensus         9 ~mgR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~   80 (225)
                      |+||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||++|..
T Consensus         1 ~~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_           1 TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             CCCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999999999999999999974

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-37  Score=213.26  Aligned_cols=71  Identities=38%  Similarity=0.578  Sum_probs=69.7

Q ss_pred             CCccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhc
Q 039654           10 KGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLT   80 (225)
Q Consensus        10 mgR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~   80 (225)
                      .||+||+|++|+|+..|+|||+|||.||||||+|||+||||+||||||||+|++|+|++|+|+.||+||+.
T Consensus         2 k~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~   72 (85)
T d1mnma_           2 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG   72 (85)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred             CCccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999985