Citrus Sinensis ID: 039657

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
Protein Sequence
LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQRSYKVISD
Secondary Structure (PSIPRED)
cccccccccccHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHccccHHHHHHHHHcHHHHHHHccccccHHHHHHHHccccccccccccHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHccccHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHccccccccccccHHHHHHHEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHccHHHEccccccccEEEEEEEccccccccccccHHHHHHHccHHHHHHHHHHHccHcHHHHHHHcHHHHHHHHHHHHccccccEEHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcc
Coil and Loop (DISEMBL)
lvnsvnengltplhilaskpnafesssrlglfdSIIYCCidlskkddgedqlfppnyaTCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASlykyedngpkrrnsgpkedeeafsvsetlpvpdtgeishqnkstnhkkiengsaqsgtekMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKnaqqsgrketPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKfgdhrpwllpgaALQMQWEIKWYQFVkksmprhfftrfndngktpkeVFTETHKDLVKEGkewlpktsESCSVVAALIATVAFatsatvpggvdqesgkpifenepvfniFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSghsfmlkdemrsaaypiyaatclPMTFFALAQLPLYFDLIWAIFKkvpqrsykvisd
Flexible Loop (DISEMBL)
lvnsvnengltplhilaskpnAFESSSRLGLFDSIIYCCIDLSKkddgedqlfPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYkyedngpkrrnsgpkedeeafsvsetlpvpdtgeishqnkstnhkkiengsaqsgtekmDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFekknaqqsgrketPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTrfndngktpkeVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKvpqrsykvisd
Low Complexity Region (SEG)
LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKlllglttlftSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQRSYKVISD
Disordered region (IsUnstruct)
**************************SRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKY***********************************************************KILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFE*************MLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKT*KEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQ********
Disordered Region (DISOPRED)
LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRR*************SETLPVPDTGEISHQNKSTN******************KILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQRSYKVI**
Disordered Region (DISEMBL)
LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYED******************VSETLPVPDTGEISHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQ********
Disordered Region (DISPRO)
LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDN*****************************************************MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQRSYKVISD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQRSYKVISD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	507	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.502	0.432	0.232	7e-08

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 135/331 (40%), Gaps = 76/331 (22%)

Query: 181 TEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQI 240
           T +V   ++ +  V+ +L +   NL  L   + N + +      + +AAR G  E+++ +
Sbjct: 200 TPLVSAAMRGHTEVVNQLLSKAGNL--LEISRSNNKNA------LHLAARQGHVEVIKAL 251

Query: 241 LDTFPA-----NQYLQALLNRKILGES-------------IFRQVDSQGNSALHLAAK-- 280
           L   P      ++  Q  L+  + G+S             I  Q D   N+ALH+A +  
Sbjct: 252 LSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKK 311

Query: 281 -------------------FGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDN 321
                                DH+  L     L +  E     ++K+ + R    R N+ 
Sbjct: 312 RAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEE---SSYIKECLARSGALRANEL 368

Query: 322 GK-------TPKEVFTETH-----------------KDLVKEGKEWLPKTSESCSVVAAL 357
            +       T  ++  + H                 K+L K  +E +   + S +VVA L
Sbjct: 369 NQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVL 428

Query: 358 IATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRY 417
            ATVAFA   TVPGG D   G  +      F IF I + +AL  S+  +V  +T++    
Sbjct: 429 FATVAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGET 487

Query: 418 QEKDFVKDLPRKLLLGLTTLFTSIAAILISF 448
           + +  V ++  KL+  L ++ TS+A +  S+
Sbjct: 488 KAEKRVVEVINKLMW-LASMCTSVAFLASSY 517

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
255554112	786	ankyrin repeat-containing protein, putat	0.901	0.581	0.574	1e-149
359479721	749	PREDICTED: uncharacterized protein LOC10	0.958	0.648	0.478	1e-138
359495447	733	PREDICTED: uncharacterized protein LOC10	0.966	0.668	0.476	1e-137
356546544	725	PREDICTED: uncharacterized protein LOC10	0.942	0.659	0.458	1e-127
449444907	795	PREDICTED: uncharacterized protein LOC10	0.986	0.628	0.441	1e-126
147855983	1513	hypothetical protein VITISV_044165 [Viti	0.848	0.284	0.498	1e-124
224066419	360	predicted protein [Populus trichocarpa]	0.662	0.933	0.592	1e-123
147841950	714	hypothetical protein VITISV_026950 [Viti	0.930	0.661	0.443	1e-121
359495445	835	PREDICTED: uncharacterized protein LOC10	0.800	0.486	0.498	1e-121
357447499	693	Serine/threonine protein phosphatase 6 r	0.883	0.646	0.446	1e-121

>gi|255554112|ref|XP_002518096.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223542692|gb|EEF44229.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 278/484 (57%), Positives = 353/484 (72%), Gaps = 27/484 (5%)

Query: 41  DLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMC 100
           +L +K++ + + +PPNY T + LFK M  A+L++LG G  RI ++  KKERH WA Q++ 
Sbjct: 305 NLQEKEE-KRRFYPPNYETSIQLFKFMANALLVILGFGSSRIKNVRAKKERHIWATQLLN 363

Query: 101 ELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGS 160
           ELVQ AS Y YE++G   RNS PK D +    SE L  P   E+    +S  H  +   +
Sbjct: 364 ELVQRASSYTYENDGRNPRNSWPKRDGDP---SEFLAAPHISEVDKLTQSKEHIGLSCPT 420

Query: 161 AQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGR 220
                 + ++    AAK+GV E+V+  L +YP  +QELNTS+KNLVLL FEKK  Q+  +
Sbjct: 421 TNQEIRRENHG--RAAKLGVAEVVNESLDAYPTAVQELNTSQKNLVLLAFEKKETQKFRK 478

Query: 221 KETPMLIAARMGVTEMVEQILDTFP----------ANQYLQA-----------LLNRKIL 259
           KETP+L+AA++G+TE+V++ILDT+P           N  L A           LL R ++
Sbjct: 479 KETPILVAAKVGITEIVDKILDTYPLAIQDLDSDEKNAVLLAVEHRQTDVYNLLLKRAMV 538

Query: 260 GESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFN 319
            ES+FRQ+D  GNSALHLAAK GD+RP L+PGAALQMQWEIKWY+FVK SMP HFF + N
Sbjct: 539 KESVFRQLDKHGNSALHLAAKLGDYRPKLVPGAALQMQWEIKWYKFVKNSMPPHFFVKHN 598

Query: 320 DNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGK 379
             G+TPKE+F  THK+LV +G EWL KTSESCSVVAAL+ATVAFATSAT+PGGV+ E+G 
Sbjct: 599 SQGQTPKEIFIVTHKELVAKGSEWLTKTSESCSVVAALVATVAFATSATIPGGVNPENGA 658

Query: 380 PIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFT 439
           PI ENEP F +F+I+SLVALCFSVTA++FFLTILTSRYQE DF  DLPRKL LGLT+LFT
Sbjct: 659 PILENEPAFEVFAIASLVALCFSVTAVIFFLTILTSRYQENDFAMDLPRKLFLGLTSLFT 718

Query: 440 SIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQ 499
           SIA+IL+SFC+GH F+LK+ +R+AAYP+YAATCLP++FFAL+QLPLYFDL  AI    PQ
Sbjct: 719 SIASILLSFCAGHFFVLKESLRTAAYPLYAATCLPISFFALSQLPLYFDLGRAILLDEPQ 778

Query: 500 RSYK 503
           RSYK
Sbjct: 779 RSYK 782

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479721|ref|XP_002272096.2| PREDICTED: uncharacterized protein LOC100255529 [Vitis vinifera]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/579 (47%), Positives = 358/579 (61%), Gaps = 93/579 (16%)

Query: 1   LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSK---------------- 44
           LVNSVNE GL+PLH+LA+K +AF S S    F +IIY CI + K                
Sbjct: 186 LVNSVNEQGLSPLHLLATKHSAFRSGSHFRWFTNIIYHCIFVEKLEEETFKQEEAISLSY 245

Query: 45  --------KDDG-------ED-------------------QLFPPNYATCVLLFKVMMKA 70
                   KD G       ED                   QL P NY TC  + K + KA
Sbjct: 246 FPFSANTGKDPGTGGQADLEDPSGNQSNMKAKGELQSQGHQLIPSNYHTCFNIIKFVFKA 305

Query: 71  MLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDNG--PKRRNSGPKEDEE 128
           +L++LG G   +  + +KKE+H WA Q++ EL+ HAS Y+YEDNG  P++ +     D  
Sbjct: 306 ILVILGFGFKAVKKVRQKKEKHVWAAQILDELLCHASFYEYEDNGRNPQQPSQKKDADTT 365

Query: 129 AFSVSETLPVP--DTGEISHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDR 186
            +S+S+   V   +T E  H    T  +   + + Q G +K                 DR
Sbjct: 366 PYSISDDHGVSFDNTLESQHLPGGTAAQP-SSATNQQGEDK-------------GAPADR 411

Query: 187 FLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFP- 245
              S P   ++ N + KN      +KK   +  RKETP+L+AA+ GV E+VE+IL+ FP 
Sbjct: 412 ---SSPEAQRKQNDNGKNKKNEQ-DKKKPSEMERKETPLLVAAKNGVVEIVERILELFPV 467

Query: 246 ---------------ANQYLQA-----LLNRKILGESIFRQVDSQGNSALHLAAKFGDHR 285
                          A +Y Q      L+ RK+L +++FR VD  GNSALHLAA  G+++
Sbjct: 468 AIHDKDYQKKNIVLLAVEYRQPHVYELLVKRKVLKDAVFRHVDIDGNSALHLAAMLGENK 527

Query: 286 PWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLP 345
           PWL+PGAALQMQWEIKWY+FVK+S+P+HFF R N  G+T K++FTE H DLV+ G EWL 
Sbjct: 528 PWLIPGAALQMQWEIKWYEFVKRSVPQHFFVRCNQKGETAKDIFTEKHMDLVQAGGEWLF 587

Query: 346 KTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTA 405
           KTSESCSVVAALIATVAFATS+TVPGGV ++ G P  E+EP F+IF+ISSLVALCFSV A
Sbjct: 588 KTSESCSVVAALIATVAFATSSTVPGGVKEKVGTPTLEDEPAFDIFAISSLVALCFSVNA 647

Query: 406 LVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAY 465
           ++ FL ILTSRYQE+DF   LPRKLL+GLT+LF SIA++LISFC+GH F+L D+++  A 
Sbjct: 648 VIMFLAILTSRYQERDFRIYLPRKLLVGLTSLFVSIASMLISFCAGHYFVLMDKLQYTAI 707

Query: 466 PIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQRSYKV 504
            +YA TCLP+ FFA+AQ PLYFDL+WA FKKVPQRSYKV
Sbjct: 708 LVYAVTCLPVIFFAVAQFPLYFDLMWATFKKVPQRSYKV 746

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495447|ref|XP_002274376.2| PREDICTED: uncharacterized protein LOC100254555 [Vitis vinifera]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/565 (47%), Positives = 350/565 (61%), Gaps = 75/565 (13%)

Query: 1   LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGED---------- 50
           L N VNE GL+PLH+LA+KP AF S + L   D IIY   +  K  +  D          
Sbjct: 179 LANYVNEQGLSPLHLLANKPTAFRSGTHLSWIDKIIYYSENAPKSGEHTDAENPKEGQAG 238

Query: 51  ---------------QLFPPNYATCVLLFKVMMKAMLIVL----GLGIWRINHITEKKER 91
                          Q +PPNY  C    K++ K ML +L    G G  +I  I  KK++
Sbjct: 239 PQHQGHQSNIGADGKQRYPPNYGICFEFIKLVCKGMLAILLSILGFGSNKIKRIIHKKQK 298

Query: 92  HTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKST 151
           HTW+IQ+M EL+QH   YKY D G     S   ++ E F     L  P+   +   ++ST
Sbjct: 299 HTWSIQIMKELLQHTEEYKYYDTGSSPHQSPFLDEVETF-----LYAPNGVRMPSPHQST 353

Query: 152 -NHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPA-----VIQELNTSEKN- 204
               K    +A +G+         + K G  + +   LK+ P+       Q L   ++N 
Sbjct: 354 LEEDKTTPYTAPTGSS--------SPKDGRMDEIKTALKNTPSKSPMEANQGLENKKENA 405

Query: 205 -----LVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPA----------NQY 249
                ++L   + K  ++  +KETP+L+AA+ G+ EMV +ILD FP           N  
Sbjct: 406 PVLNPVILAGKKTKKTEKVDKKETPILLAAKNGIAEMVREILDRFPVAIQDMNSEHKNMV 465

Query: 250 LQA-----------LLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQW 298
           L A           LLNRKI  +++FR VD  GNSALHLAA   D+ PW +PGAALQMQW
Sbjct: 466 LLAVENRQPHVYELLLNRKIQKDTVFRIVDKDGNSALHLAAMLRDNLPWHIPGAALQMQW 525

Query: 299 EIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALI 358
           EIKW+ +VK SMP HFF  +N N +TPKEVF E+HK+LV++G +WL  TS+SCSVV+ALI
Sbjct: 526 EIKWFDYVKNSMPIHFFPHYNANNQTPKEVFNESHKELVEKGGKWLKATSDSCSVVSALI 585

Query: 359 ATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQ 418
           ATVAFATSATVPGG+ ++SGKPI E +P F IF+ISSLVALCFSVT++V FL ILTSRYQ
Sbjct: 586 ATVAFATSATVPGGIKEDSGKPILERQPAFRIFAISSLVALCFSVTSVVMFLAILTSRYQ 645

Query: 419 EKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFF 478
            KDF +DLPRKLLLGL++LF SIAAIL+SFC+GH F+LKDE++ AA+P+YA TCLP+TFF
Sbjct: 646 VKDFRRDLPRKLLLGLSSLFVSIAAILVSFCAGHFFVLKDELKYAAFPVYAVTCLPVTFF 705

Query: 479 ALAQLPLYFDLIWAIFKKVPQRSYK 503
           A+AQ PLY DL+WA FKKVP+R  +
Sbjct: 706 AIAQFPLYLDLVWATFKKVPKRGSR 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546544|ref|XP_003541685.1| PREDICTED: uncharacterized protein LOC100798360 [Glycine max]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/573 (45%), Positives = 348/573 (60%), Gaps = 95/573 (16%)

Query: 1   LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCID-----LSKKDDGEDQ---- 51
           LVNSVNE+GLTPLH+LA+KP+ F+S  RLG F++++Y  I      L KK   +DQ    
Sbjct: 176 LVNSVNEDGLTPLHLLANKPSVFKSGGRLGRFEALVYYVIKPFTQFLQKKLPPKDQTVTE 235

Query: 52  -------------------------------LFPPNYATCVLLFKVMMKAMLIVLGLGIW 80
                                          L+P NY +CV LFK +   M ++ G G  
Sbjct: 236 RVDLEASKKVATNNGAVTEASGSETSDRSRPLYPTNYNSCVDLFKFVFVVMSVIFGAGSA 295

Query: 81  RINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPK-RRNSGPKE---DEEAFSVSETL 136
            IN I  KKE+H W+ Q+M EL++ AS+Y+Y+D+G K  +N G K+   D  +F    ++
Sbjct: 296 NINKIRRKKEKHVWSAQIMDELLKRASMYEYDDDGNKPLQNLGDKDQQTDPYSFDGGGSV 355

Query: 137 PVPDTGEISHQ---NKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPA 193
            + D  E            H+KI       G +K +N +  +  +       +       
Sbjct: 356 TLADITEEQQHLTIKGEPKHQKI-------GGKKDENPLGSSLNLYCCHCTSK------- 401

Query: 194 VIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPA------- 246
                   EKN  + T EKK        ETP+LIAA+ GVTEMV +I+D+FP        
Sbjct: 402 ------KDEKNEKISTKEKKVL------ETPILIAAKNGVTEMVAKIMDSFPVAVHDMDA 449

Query: 247 -------------NQYL-QALLNRKILGES-IFRQVDSQGNSALHLAAKFGDHRPWLLPG 291
                          YL   LL++K L ES IF +VD++GNSALHLAAK GD++PWL+PG
Sbjct: 450 KKKNIVLLAVENRQTYLYNFLLSKKNLKESNIFEKVDNEGNSALHLAAKLGDYKPWLIPG 509

Query: 292 AALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESC 351
            ALQM WEIKWY FVK SM  HFF+ +N+  KTP+++F+ETHKDLV+ G EWL KT+ESC
Sbjct: 510 EALQMHWEIKWYLFVKGSMQPHFFSHYNNENKTPRDIFSETHKDLVRSGGEWLKKTAESC 569

Query: 352 SVVAALIATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLT 411
           S+VAALIA VAF+TS  VPG    ++G P  E  P F  F+I+SL+ALC SVT+LV FL+
Sbjct: 570 SLVAALIAAVAFSTSTNVPGDFKDDTGSPTLEERPEFKAFAIASLIALCCSVTSLVLFLS 629

Query: 412 ILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAAT 471
           ILTSRYQE+DF K+LPRKL+LGLT+LF SI ++++ FC+GH F+LKD+++S A+P+YA T
Sbjct: 630 ILTSRYQERDFGKNLPRKLILGLTSLFMSITSMMVCFCAGHFFVLKDKLKSVAFPVYAVT 689

Query: 472 CLPMTFFALAQLPLYFDLIWAIFKKVPQRSYKV 504
           CLP+T FALAQ PLY DL WA FKKVPQR YK 
Sbjct: 690 CLPVTLFALAQFPLYIDLTWATFKKVPQRGYKT 722

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444907|ref|XP_004140215.1| PREDICTED: uncharacterized protein LOC101211501 [Cucumis sativus]

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 266/603 (44%), Positives = 355/603 (58%), Gaps = 103/603 (17%)

Query: 1   LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLS----------------- 43
           LVN VNE G TPLH+LA+KP+AF+S + LG +  I+Y CI +                  
Sbjct: 197 LVNFVNEQGYTPLHLLATKPSAFKSGTHLGRWKMIVYHCIFVDEVKIDPKSFLRALPTKP 256

Query: 44  -----KKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKER------- 91
                + +   ++L+PPNY TC  LF  + K + +V  +G  + N    + ++       
Sbjct: 257 LSLHRRSNPNNEKLYPPNYTTCANLFNFLWKGIRMVCTVGKTKKNQNKNEAKKSINDAEN 316

Query: 92  ------------------HTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVS 133
                             H W+ QVM +L+Q AS+Y+YEDNG +   +  +E+ + + V+
Sbjct: 317 PHPEGSRGIKKIEEKKEKHMWSFQVMNKLLQCASIYEYEDNGSRPMETSIEEETQPYYVA 376

Query: 134 ETLPVPDTGEIS------------------HQNKSTNHKKIENGSAQSGTEKMDNKILLA 175
           +     D   I+                  H     +H    +  A++  E+    I++ 
Sbjct: 377 DGNVTFDELNIAQHEVQPPQDQPPPNISNLHNINIIDHDHGHDYVAEN-KEEATTTIIVE 435

Query: 176 AKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEK-----------KNAQQSGRKETP 224
           +K   + + D+ LK +P  I +     K L+L                KN Q S R+ETP
Sbjct: 436 SK---SSIGDKILKYFPITIGD-KKENKKLILKATTTKNTWKNTEDHLKNKQYS-RQETP 490

Query: 225 MLIAARMGVTEMVEQILDTFPA------------------NQY---LQALLNRKILGESI 263
           +LIAA+ GV EMVE+IL  FP                   N++    + LL R I+ ES 
Sbjct: 491 VLIAAKNGVVEMVEKILHLFPVAIHDTNSEQKNIVLLAVENRHPHIYELLLRRNIIRESA 550

Query: 264 FRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGK 323
           FR VDSQGNSALHLAAK GDH+PWL+PGAALQMQWE+KWYQFVK SMP +FF  +N  GK
Sbjct: 551 FRMVDSQGNSALHLAAKLGDHKPWLIPGAALQMQWELKWYQFVKASMPSNFFPTYNKEGK 610

Query: 324 TPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFE 383
           T K +F+ETH DLV+ G+EWL  TSESCS+VAALIATVAFATSATVPGG DQ  G P+  
Sbjct: 611 TSKVLFSETHCDLVRSGEEWLTHTSESCSLVAALIATVAFATSATVPGGNDQNKGTPLLH 670

Query: 384 NEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAA 443
             P FN+F+++SL+ALC SVT+LV FL+ILTSR+Q KDF  +LP KLLLGL++LF SIAA
Sbjct: 671 GRPAFNVFAVASLIALCCSVTSLVMFLSILTSRFQAKDFGGNLPTKLLLGLSSLFLSIAA 730

Query: 444 ILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQRSYK 503
           +L+SFC+GH F+L D++  AA P+YA TCLP+T FA+AQ PLY DL+WA  KKVP RSY 
Sbjct: 731 MLVSFCAGHYFVLSDKLHYAALPVYAVTCLPVTLFAIAQFPLYVDLVWATIKKVPTRSYS 790

Query: 504 VIS 506
            IS
Sbjct: 791 AIS 793

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855983|emb|CAN82817.1| hypothetical protein VITISV_044165 [Vitis vinifera]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/485 (49%), Positives = 315/485 (64%), Gaps = 55/485 (11%)

Query: 51  QLFPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYK 110
           QL P NY TC  + K + KA+L++LG G   +  + +KKE+H WA Q++ EL+ HAS Y+
Sbjct: 362 QLIPSNYHTCFNIIKFVFKAILVILGFGFKAVKKVRQKKEKHVWAAQILDELLCHASFYE 421

Query: 111 YEDNG--PKRRNSGPKEDEEAFSVSETLPVP--DTGEISHQNKSTNHKKIENGSAQSGTE 166
           YEDNG  P++ +     D   +S+S+   V   +T E  H    T  +   +   Q G +
Sbjct: 422 YEDNGRNPQQPSQKKDADTTPYSISDDHGVSFDNTLESQHLXXGTAAQP-SSAXNQQGED 480

Query: 167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQ------QSGR 220
           K                 D   +S P   ++ N + KN       KKN Q      +  R
Sbjct: 481 K-------------GAPAD---QSSPEAQRKQNDNGKN-------KKNEQDKKKPSEMER 517

Query: 221 KETPMLIAARMGVTEMVEQILDTFP----------------ANQYLQA-----LLNRKIL 259
           KET +L+AA+ GV E+VE+IL+ FP                A +Y Q      L+ RK+L
Sbjct: 518 KETXLLVAAKNGVVEIVERILELFPVAIHDKDYQKKNIVLLAVEYRQPHVYELLVKRKVL 577

Query: 260 GESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFN 319
            +++FR VD  GNSALHLAA  G+++PWL+PGAALQMQWEIKWY+FVK+S+P+HFF R N
Sbjct: 578 KDAVFRHVDIDGNSALHLAAMLGENKPWLIPGAALQMQWEIKWYEFVKRSVPQHFFVRCN 637

Query: 320 DNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGK 379
             G+T K++FTE H DLV+ G EWL KTSESCSVV ALIATVAFATS T PGGV ++ G 
Sbjct: 638 XKGETAKDIFTEXHMDLVQAGGEWLFKTSESCSVVXALIATVAFATSXTXPGGVKEBVGT 697

Query: 380 PIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFT 439
           P  E+EP F+IF+ISSLVALCFSV A++ FL ILTSR QE+DF   LPRKLL+GLT+LF 
Sbjct: 698 PTLEDEPAFDIFAISSLVALCFSVNAVIMFLAILTSRXQERDFRIYLPRKLLVGLTSLFV 757

Query: 440 SIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQ 499
           SIA++LISFC+GH F+L D++   A  +YA TCLP+ FFA+AQ PLYFDL+WA FKKVPQ
Sbjct: 758 SIASMLISFCAGHYFVLMDKLXYTAILVYAVTCLPVIFFAVAQFPLYFDLMWATFKKVPQ 817

Query: 500 RSYKV 504
           RSYK+
Sbjct: 818 RSYKL 822

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066419|ref|XP_002302098.1| predicted protein [Populus trichocarpa] gi|222843824|gb|EEE81371.1| predicted protein [Populus trichocarpa]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/363 (59%), Positives = 277/363 (76%), Gaps = 27/363 (7%)

Query: 168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLI 227
           M  +IL A K GVTEM+++ L  +   + +++  ++N+VL+T +K  A     +ETP+LI
Sbjct: 1   MKIQILTAEKDGVTEMLEKILNLFQ--VGDMDLDKRNIVLMTTKKPKAPAMEMRETPILI 58

Query: 228 AARMGVTEMVEQILDTFPAN------------------------QYLQALLNRKILGESI 263
           AA+ G+ EMVE+I++ FP                          Q+L +L  R I+ ESI
Sbjct: 59  AAKNGIVEMVEKIIEKFPVAINDVNAEKKNIVLLSVENRQPHVYQFLLSL-KRNIVKESI 117

Query: 264 FRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGK 323
           FRQVDS+GNSALHLAA  GD +PW +PGAALQMQWEIKW++FVK SMP +FF R+N  GK
Sbjct: 118 FRQVDSKGNSALHLAATLGDFKPWSIPGAALQMQWEIKWFEFVKDSMPPNFFVRYNKEGK 177

Query: 324 TPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFE 383
           TP+++FTETHKDLVK G EWL  TSESCSVVAALIATVAFATS+TVPGGV++ +G PI E
Sbjct: 178 TPRDIFTETHKDLVKSGGEWLTNTSESCSVVAALIATVAFATSSTVPGGVNEITGSPILE 237

Query: 384 NEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAA 443
            +P F +F+ISSL+ALCFSVT++V FL ILTSRYQE+DF +DLPRKLL+GLT+LF SIA+
Sbjct: 238 YQPAFKMFAISSLIALCFSVTSVVMFLAILTSRYQERDFGQDLPRKLLVGLTSLFISIAS 297

Query: 444 ILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQRSYK 503
           +L+SFC+GH F+L+DE++ AA+P+YA TCLP+TFFA+AQ PLYFDL WA FKKVPQRSY 
Sbjct: 298 VLVSFCTGHFFVLRDELKYAAFPVYAVTCLPVTFFAVAQFPLYFDLTWATFKKVPQRSYM 357

Query: 504 VIS 506
           V++
Sbjct: 358 VVA 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841950|emb|CAN67508.1| hypothetical protein VITISV_026950 [Vitis vinifera]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/561 (44%), Positives = 339/561 (60%), Gaps = 89/561 (15%)

Query: 1   LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGED---------- 50
           LVN V+E GLTPLH+LASKP AF S + L   + +IY CI + K    ED          
Sbjct: 184 LVNYVDEKGLTPLHVLASKPTAFRSGTHLHFIERLIYECIYVDKLKTVEDYPYIQEICEE 243

Query: 51  ----QLFPPNYATCVLLFKVMMKAMLIVLGL--------------GIWRINHITEKKERH 92
               + +P NY TC+  + ++ + +  ++                G  +I  I +KKE+H
Sbjct: 244 KVKLRQYPENYHTCMNFWNIIKRPVSHMIKRKNHGDVDADNPELPGFGKIRRIVDKKEKH 303

Query: 93  TWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVS-------ETLPVPDTGEIS 145
           + ++Q+M EL+  AS Y Y  NG     S   EDEE    +       E  PV D+    
Sbjct: 304 SKSLQIMDELLSRASSYGYNKNGRNPNLSQSGEDEETTPCNLLKEPTQENKPVSDSNRNE 363

Query: 146 HQNK-STNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKN 204
            +   S N   ++NGS  +            + + +T M               N  EK 
Sbjct: 364 KEGSCSVNCPHVKNGSKDTSPS--------GSSLEITNM---------------NRGEK- 399

Query: 205 LVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPA----------NQYLQALL 254
                   K   + G  ETP+LIAA+ GV EMV+ IL+ FP           N  L A+ 
Sbjct: 400 --------KRTVEFGNMETPILIAAKNGVKEMVDSILEKFPVAIHDRNKEKKNLVLLAVE 451

Query: 255 NRK-----------ILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWY 303
           NR+           IL +S+F  VD++GNSALHLAA  GD++PW +PGAALQMQWEIKWY
Sbjct: 452 NRQPEVYELLLKKNILKDSVFGVVDNEGNSALHLAAMLGDYQPWHIPGAALQMQWEIKWY 511

Query: 304 QFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAF 363
           +FVK SMP HFF+ +N+  +TPKE+FT+ H +LV+ G +WL  TS SCSV+A LIATVAF
Sbjct: 512 KFVKNSMPPHFFSHYNNKNQTPKEIFTDHHNELVRRGGKWLNNTSSSCSVIATLIATVAF 571

Query: 364 ATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFV 423
           ATSAT+PG  ++E G+P FE++  FN+F+ISSLVALCFSVT++V FL IL+SR+QE DF 
Sbjct: 572 ATSATIPGSFNEEXGRPNFEHQLAFNLFAISSLVALCFSVTSMVMFLAILSSRHQEDDFH 631

Query: 424 KDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQL 483
           +DLP+KLLLGLTTLF SI+A+L+SFC+GH F+L+DE++ AA+P+YA TCLP++ FAL + 
Sbjct: 632 RDLPKKLLLGLTTLFISISAVLVSFCAGHFFILRDELKRAAFPVYAITCLPISIFALVEF 691

Query: 484 PLYFDLIWAIFKKVPQRSYKV 504
           PLYFD++W  F+KVP+R YK+
Sbjct: 692 PLYFDVVWTTFRKVPRRRYKL 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495445|ref|XP_002274340.2| PREDICTED: uncharacterized protein LOC100259671 [Vitis vinifera]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/483 (49%), Positives = 300/483 (62%), Gaps = 77/483 (15%)

Query: 47  DGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHA 106
           D + QLFPPNY   + L K + +AML+VLGLG  +I  I  KKE+H W+IQ+M +L+  +
Sbjct: 407 DKQPQLFPPNYYISIELIKFIYRAMLVVLGLGSKQIKKIHSKKEKHLWSIQIMNKLLDSS 466

Query: 107 SLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEI--SHQNKSTNHKKIENGSAQSG 164
           S       G +   +   ++ +AF   + +   DT  +  S +N+    KK         
Sbjct: 467 SSEYDSSAGSQPLTTKEADETDAF---KEIEANDTKRMKTSSENEKRQQKK--------- 514

Query: 165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETP 224
             K D K                                         K   +  +KETP
Sbjct: 515 --KNDEKA----------------------------------------KETDEMAKKETP 532

Query: 225 MLIAARMGVTEMVEQILDTFPA----------NQYLQA-----------LLNRKILGESI 263
           +LIAA+ G+ EMV +IL+ FP           N  L A           LL R+IL +SI
Sbjct: 533 ILIAAKNGIVEMVVRILELFPVAIHDMNSEKKNIVLLAVENRQTHVYALLLKREILKDSI 592

Query: 264 FRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGK 323
           F  VD +GNSALHLAAK  D  PW +PGAALQMQWEIKWY+FVK SMP HFF R+N+N K
Sbjct: 593 FHVVDHEGNSALHLAAKLNDRHPWRIPGAALQMQWEIKWYEFVKNSMPIHFFVRYNNNNK 652

Query: 324 TPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIFE 383
           T +EVFTE+H DLV +G +WL  TS SCSVVAALIATVAFATSATVPGGV +  G P  E
Sbjct: 653 TAREVFTESHADLVDKGGKWLNDTSNSCSVVAALIATVAFATSATVPGGVKEGIGVPTLE 712

Query: 384 NEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAA 443
           N+P FN+FSISSL+ALCFSVT++V FL ILTSR+QEKDF  DLP+KLL GL++LF SIAA
Sbjct: 713 NQPAFNVFSISSLIALCFSVTSVVMFLAILTSRHQEKDFGSDLPKKLLFGLSSLFISIAA 772

Query: 444 ILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIWAIFKKVPQRSYK 503
           IL+SFC+GH F+LKDE++  A+PIYA TCLP+TFFA+ Q PLY DLI A FKKVPQRSY 
Sbjct: 773 ILVSFCAGHFFVLKDELKYFAFPIYAVTCLPVTFFAVMQFPLYLDLICATFKKVPQRSYV 832

Query: 504 VIS 506
            +S
Sbjct: 833 AVS 835

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447499|ref|XP_003594025.1| Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] gi|355483073|gb|AES64276.1| Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/571 (44%), Positives = 337/571 (59%), Gaps = 123/571 (21%)

Query: 1   LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCC--IDLSKKDDGEDQL------ 52
           LVN VN  GL+PLHILA KPN F S +R+ L D IIY C  +D  K++  + Q       
Sbjct: 176 LVNVVNHEGLSPLHILARKPNCFRSCTRMELIDRIIYTCSIVDEDKEERYDIQAHTQTSH 235

Query: 53  -FPPNYATCVL-------LFKV-------------------------------------- 66
            +P NY TC+         FKV                                      
Sbjct: 236 HYPLNYGTCMTFISLLNRFFKVTTTGKDTKAAATSDEENHCSRKSEQEQAKKEKKNHWFP 295

Query: 67  -----MMKAMLI-------VLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDN 114
                M++ +++       + G+G   +  I  KKE+H  A QVM EL+QHASLYKY+  
Sbjct: 296 PNWESMIRILILAMKVFLIIFGVGATWVEKIQRKKEKHIRAKQVMNELIQHASLYKYDFT 355

Query: 115 GPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSAQSGTEKMDNKILL 174
           GP      P+ +E              G+I     +T ++ IE         +M + IL+
Sbjct: 356 GP-----SPRVEELG-----------GGDIDKIKSNTENEVIEK-------RRMVSPILI 392

Query: 175 AAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVT 234
           AAK+GVTEM++  L  YP  I ++++  KN+VLL  E +                     
Sbjct: 393 AAKMGVTEMIENILDMYPVAIHDVDSQNKNVVLLAIENRQP------------------- 433

Query: 235 EMVEQILDTFPANQYLQALLN-RKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAA 293
                         ++ +LLN R ++ E+ FRQVD  GNSALHLAA +   +PW +PGAA
Sbjct: 434 --------------HVYSLLNKRSVIKETAFRQVDINGNSALHLAATYRRFKPWRVPGAA 479

Query: 294 LQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSV 353
           +QMQWE KWY+ VK SMP +F+ R+N +GKT K+VF +TH  L KEG +WL KT+ESCSV
Sbjct: 480 MQMQWEYKWYKLVKNSMPPNFYERYNKDGKTAKQVFIDTHAPLTKEGSKWLTKTAESCSV 539

Query: 354 VAALIATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTIL 413
           VAAL+ATVAF TS  +PGG DQESG P+   +P F +++++SLVALC SVTALV FL+IL
Sbjct: 540 VAALVATVAFTTSTAIPGGPDQESGMPLLLEKPAFKLYAVASLVALCSSVTALVLFLSIL 599

Query: 414 TSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCL 473
           TSR++EKDFV DLPRKLL+GLTTLFTSIA++L+SFC+GH F+++ +MR A YPIYAATCL
Sbjct: 600 TSRFEEKDFVIDLPRKLLVGLTTLFTSIASVLVSFCAGHFFIVEAQMRFAVYPIYAATCL 659

Query: 474 PMTFFALAQLPLYFDLIWAIFKKVPQRSYKV 504
           P++FFAL QLPLYFDL  A+ +KVPQRSYKV
Sbjct: 660 PVSFFALVQLPLYFDLSLAMCRKVPQRSYKV 690

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.479	0.402	0.342	5.2e-39
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.477	0.361	0.394	1.7e-38
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.489	0.396	0.368	2.9e-36
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.447	0.654	0.360	1.7e-34
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.437	0.386	0.357	5.1e-32
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.189	0.158	0.357	9.8e-07
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.197	0.169	0.359	6.6e-06
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.197	0.166	0.320	2e-05
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.163	0.172	0.344	2.7e-05
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.193	0.171	0.333	5.4e-05

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.2e-39, Sum P(2) = 5.2e-39
 Identities = 85/248 (34%), Positives = 136/248 (54%)

Query:   250 LQALLNRKILGESIFRQVDSQGNSALHLAAKFGD-HRPWLLPGAALQMQWEIKWYQFVKK 308
             +  L +RK+   ++ R  D   N+ LH+A +     +   + GAAL+MQ E +W++ V+ 
Sbjct:   348 IHGLDDRKV---TLLRSYDKGNNNILHIAGRLSTPDQLSKISGAALKMQRESQWFKEVES 404

Query:   309 SMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSAT 368
              +      + N + KTP+++F   H+ L KEG+EW+  T+ +CS VAALIATV F    T
Sbjct:   405 LVSEREVVQKNKDNKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFT 464

Query:   369 VPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPR 428
             VPGG+D  SG P+  N+  F  F  +  +A   S  +++ FL+ILTSRY   DF+  LPR
Sbjct:   465 VPGGIDGTSGSPLILNDLHFRAFIFTDTLAFFASCISVLIFLSILTSRYSFDDFIVSLPR 524

Query:   429 KXXXXXXXXXXSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFD 488
             K          SIA++L++F +  S  ++ +  +  YP+      P   F + Q PL  +
Sbjct:   525 KMILGQSILFISIASMLVAFITSLSASMRHKP-ALVYPLKPLASFPSLLFLMLQYPLLKE 583

Query:   489 LIWAIFKK 496
             +I + + K
Sbjct:   584 MISSTYGK 591

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 99/251 (39%), Positives = 137/251 (54%)

Query:   250 LQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL--LPGAALQMQWEIKWYQFVK 307
             L  L +RK L   +    D  GN  LHLA  F      L  + GA LQ+Q E++W++ V+
Sbjct:   413 LYGLDDRKYL---LLADKDCDGNGVLHLAG-FPSPPSKLSSVVGAPLQLQRELQWFKEVE 468

Query:   308 KSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSA 367
             +  P     R N   +TP E+FT+ H+ L +E ++W+  T+ SCS+VAALI TV FA   
Sbjct:   469 RIAPEIEKERVNTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVF 528

Query:   368 TVPGGVDQES-GKPIFENEPVFNIFSISSLVALCF-SVTALVFFLTILTSRYQEKDFVKD 425
             TVPGG D  S GKP    +  F IF +S L++ CF S T+++ FL ILT+RY   DF+  
Sbjct:   529 TVPGGTDDNSKGKPFHLRDRRFIIFIVSDLIS-CFASCTSVLIFLGILTARYSFDDFLVF 587

Query:   426 LPRKXXXXXXXXXXSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPL 485
             LP K          SIAA+LI+F S    M+  E +    P     CLP   F L Q PL
Sbjct:   588 LPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILFACLPALLFVLLQYPL 647

Query:   486 YFDLIWAIFKK 496
               ++I++ + K
Sbjct:   648 LKEMIFSTYGK 658

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
 Identities = 95/258 (36%), Positives = 144/258 (55%)

Query:   250 LQALLNRKILGESIFRQVDSQGNSALHLAA-KFGDHRPWLLPGAALQMQWEIKWYQFVKK 308
             L  L +RK L        DS GNS LHLA     +++   +  A LQMQ E++W++ +++
Sbjct:   371 LYGLGDRKYL---FLADKDSDGNSVLHLAGYPPPNYKLATVVSATLQMQRELQWFKEMER 427

Query:   309 SMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSAT 368
              +P     R N    TP E+F + H+ +  E ++W+  T+ SCS+VAALI TV FA   T
Sbjct:   428 IVPAIENERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAAIFT 487

Query:   369 VPGGVDQESG-KPIFENEPVFNIFSISSLVALCFSV-TALVFFLTILTSRYQEKDFVKDL 426
             VPGG D  SG +P   +E +F IF +S L++ CF+  T+++ FL ILT+RY   DF+  L
Sbjct:   488 VPGGTDDNSGGRPFHRHERIFVIFIVSDLIS-CFAACTSVLIFLGILTARYAFDDFLFSL 546

Query:   427 PRKXXXXXXXXXXSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLY 486
             P            SIAA+L++F S   F + ++    A  I+ A C P   F + Q PL 
Sbjct:   547 PANMIAGLSTLFVSIAAMLVAFSSA-LFTIFNDPWIVAPTIFFA-CFPALLFVMIQYPLL 604

Query:   487 FDLIWAIF-KKVPQRSYK 503
              +LI++ + K++  R+ K
Sbjct:   605 KELIFSTYGKRIFDRNMK 622

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 85/236 (36%), Positives = 133/236 (56%)

Query:   262 SIFRQVDSQGNSALHLAAKFGD-HRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFND 320
             +++++ +S  N  LHL A+    +R  ++ GAALQMQ EI WY+ VK+ +PR +    N 
Sbjct:    95 AMYKEKESNDN-LLHLVARLPPPNRLQVVSGAALQMQREILWYKAVKEIVPRVYIKTKNK 153

Query:   321 NGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQES--- 377
               +   ++FT+ H +L KEG++W+ +T+ +C +V+ LIATV FA + T+PGG D      
Sbjct:   154 KEEVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGGNDTSGDIK 213

Query:   378 --GKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKXXXXXX 435
               G P F  E  F +F IS  VAL  SVT+++ FL+ILTSRY E  F   LP K      
Sbjct:   214 TLGFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTTLPTKLMLGLL 273

Query:   436 XXXXSIAAILISFCSGHSFMLKDEMR-SAAYPIYAATCLPMTFFALAQLPLYFDLI 490
                 SI +++++F +    +   E + S    +Y A+   ++F  L    L+FD +
Sbjct:   274 ALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVL-HFQLWFDTL 328

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 5.1e-32, Sum P(2) = 5.1e-32
 Identities = 84/235 (35%), Positives = 132/235 (56%)

Query:   264 FRQVDSQGNSALHLAAKFGD-HRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNG 322
             +++  S+ ++ LHL A+    +R  +  GAAL MQ E+ W++ VK+ +PR +    N  G
Sbjct:   321 YKEKQSK-DTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETKNTKG 379

Query:   323 KTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGK--- 379
             +   ++FTE H++L KEG+ W+ +T+ +C + A LIATV FA + T+PGG D    K   
Sbjct:   380 ELAHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGDKANT 439

Query:   380 ---PIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKXXXXXXX 436
                P F    +F+IF++S  VAL  S+ ++V FL+I TSRY E+DF  DLP K       
Sbjct:   440 LGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGLSA 499

Query:   437 XXXSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQLPLYFDLIW 491
                SI +++++F      M+   +  A+  +   +CL  +  AL    LYF L W
Sbjct:   500 LFISIISMILAFTFS---MILIRVEKASLSLVLISCLA-SLTALTFAYLYFHL-W 549

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
 Identities = 35/98 (35%), Positives = 51/98 (52%)

Query:   316 TRFNDNGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQ 375
             T+     KT K V     K+L K  +  +   + S +VVA L ATVAFA   TVPGG D 
Sbjct:   402 TQLEQTRKTNKNV-DGIAKELRKLHRAGINNATNSVTVVAVLFATVAFAAIFTVPGG-DD 459

Query:   376 ESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTIL 413
             + G  +  +   F IF I + +AL  S+  +V  +T++
Sbjct:   460 DHGVAVMVHATSFKIFFIFNAIALFTSLAVVVVQITLV 497

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 6.6e-06, Sum P(3) = 6.6e-06
 Identities = 37/103 (35%), Positives = 54/103 (52%)

Query:   323 KTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQESGKPIF 382
             +T K V   + K+L K  +E +   + S +VVA L ATVAFA   TVPGG D   G  + 
Sbjct:   395 RTNKNVHNIS-KELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGSAVV 452

Query:   383 ENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQ-EKDFVK 424
                  F IF I + +AL  S+  +V  +T++    + EK  V+
Sbjct:   453 VGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVE 495

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
 Identities = 34/106 (32%), Positives = 53/106 (50%)

Query:   323 KTPKEVFTETHKDLVKEGK-EWLPKTSESCSVVAALIATVAFATSATVPGGVDQES---G 378
             K+ K      HK L  E   E L     + ++VA LIA+V++A     PGGV Q+    G
Sbjct:   379 KSKKHHVKRGHKSLEHEMHIEALQNARNTIAIVAVLIASVSYAGGINPPGGVYQDGPWKG 438

Query:   379 KPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVK 424
             K +  N   F +F+I + +AL  S+  ++  ++I+   YQ K   K
Sbjct:   439 KSLVGNTAAFKVFAICNNIALFTSLCIVILLVSIIP--YQRKPLKK 482

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query:   331 ETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQES----GKPIFENEP 386
             E+HK+      E L     + +VVA LIA+V FA     PGG+ QES    GK +     
Sbjct:   197 ESHKEESVMHSEALQNARNTITVVAILIASVTFAVGMNPPGGIYQESTSSKGKSVAAKTV 256

Query:   387 VFNIFSISSLVALCFSVTALVFFLTIL 413
              F IF +S+ +AL  S+  ++  ++I+
Sbjct:   257 AFKIFYVSNSIALFTSLWIVILLVSII 283

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
 Identities = 34/102 (33%), Positives = 52/102 (50%)

Query:   327 EVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQES---GKPIFE 383
             ++F    K   K   E L     + ++VA LIA+VAF      PGGV QE    GK    
Sbjct:   375 QIFETPSKRESKMHAEALLNARNTITIVAVLIASVAFTCGINPPGGVYQEGPYKGKSTAG 434

Query:   384 NEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQE-KDFVK 424
                 F +FSIS+ +AL  S+  ++  ++I+  R +  K+F+K
Sbjct:   435 RTLAFQVFSISNNIALFTSLCIVILLVSIIPYRTRPLKNFLK 476

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023782001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (735 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	507
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.003
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  105 bits (264), Expect = 3e-27
 Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 13/121 (10%)

Query: 341 KEWLPKTSESCSVVAALIATVAFATSATVPGGVDQES-----GKPIFENEPV-FNIFSIS 394
            EWL KT  S  VVA LIATV FA   T PGG  Q+      G PI   +P  F  F +S
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 395 SLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSF 454
           + +A   S+ A++  L I+        F + LPR LL  LT L+ S+ +++++F +G   
Sbjct: 61  NTIAFVASLVAVILLLYIV------PSFSRRLPR-LLALLTLLWLSLLSLMVAFAAGSYR 113

Query: 455 M 455
           +
Sbjct: 114 V 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 17/62 (27%)

Query: 223 TPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG 282
           TP+ +AA+ G  E+V+ +L+                         D  GN+ LHLAA+ G
Sbjct: 42  TPLHLAAKNGHLEIVKLLLEKGADV-----------------NARDKDGNTPLHLAARNG 84

Query: 283 DH 284
           + 
Sbjct: 85  NL 86

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 17/65 (26%)

Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLA 278
           G  +T + +AAR G  E+V+ +L+                   +     D  GN+ALHLA
Sbjct: 26  GDTDTALHLAARNGNLEIVKLLLEH-----------------GADVNAKDKDGNTALHLA 68

Query: 279 AKFGD 283
           A+ G+
Sbjct: 69  ARNGN 73

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	507
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.93
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
KOG0510	929	consensus Ankyrin repeat protein [General function	99.91
PHA02876	682	ankyrin repeat protein; Provisional	99.9
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.9
PHA02791	284	ankyrin-like protein; Provisional	99.89
PHA02874	434	ankyrin repeat protein; Provisional	99.89
PF13962	113	PGG: Domain of unknown function	99.89
PHA02946	446	ankyin-like protein; Provisional	99.89
PHA03100	480	ankyrin repeat protein; Provisional	99.88
PHA02878	477	ankyrin repeat protein; Provisional	99.88
PHA03095	471	ankyrin-like protein; Provisional	99.87
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.86
PHA02946	446	ankyin-like protein; Provisional	99.85
PHA02876	682	ankyrin repeat protein; Provisional	99.85
PHA03095	471	ankyrin-like protein; Provisional	99.84
PHA02875	413	ankyrin repeat protein; Provisional	99.84
KOG0510	929	consensus Ankyrin repeat protein [General function	99.83
PHA02989	494	ankyrin repeat protein; Provisional	99.83
PHA02791	284	ankyrin-like protein; Provisional	99.82
PHA02859	209	ankyrin repeat protein; Provisional	99.81
PHA02874	434	ankyrin repeat protein; Provisional	99.81
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.8
PHA02798	489	ankyrin-like protein; Provisional	99.8
PHA02875	413	ankyrin repeat protein; Provisional	99.78
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.78
PHA03100	480	ankyrin repeat protein; Provisional	99.78
PHA02798	489	ankyrin-like protein; Provisional	99.77
PHA02859	209	ankyrin repeat protein; Provisional	99.76
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.76
PHA02730	672	ankyrin-like protein; Provisional	99.75
PHA02878	477	ankyrin repeat protein; Provisional	99.75
PHA02989	494	ankyrin repeat protein; Provisional	99.75
PHA02792	631	ankyrin-like protein; Provisional	99.73
KOG0514	452	consensus Ankyrin repeat protein [General function	99.72
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.72
KOG0508	615	consensus Ankyrin repeat protein [General function	99.71
PHA02741	169	hypothetical protein; Provisional	99.69
PHA02917	661	ankyrin-like protein; Provisional	99.66
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.65
PHA02730	672	ankyrin-like protein; Provisional	99.65
PHA02743	166	Viral ankyrin protein; Provisional	99.65
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.64
PHA02917	661	ankyrin-like protein; Provisional	99.63
PHA02736	154	Viral ankyrin protein; Provisional	99.63
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.63
PHA02795	437	ankyrin-like protein; Provisional	99.63
PHA02795	437	ankyrin-like protein; Provisional	99.63
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.6
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.6
KOG0508	615	consensus Ankyrin repeat protein [General function	99.58
PHA02743	166	Viral ankyrin protein; Provisional	99.58
PHA02741	169	hypothetical protein; Provisional	99.57
PHA02884	300	ankyrin repeat protein; Provisional	99.56
PHA02736	154	Viral ankyrin protein; Provisional	99.56
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.55
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.55
KOG0514	452	consensus Ankyrin repeat protein [General function	99.55
PHA02792	631	ankyrin-like protein; Provisional	99.53
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.52
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.51
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.48
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.47
PHA02884	300	ankyrin repeat protein; Provisional	99.44
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.43
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.41
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.39
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.39
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.25
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.21
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.19
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.17
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.15
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.15
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.15
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.05
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.04
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.02
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.01
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.0
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.92
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.85
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.84
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.84
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.81
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.79
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.78
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.67
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.59
PF13606	30	Ank_3: Ankyrin repeat	98.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.28
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.26
PF13606	30	Ank_3: Ankyrin repeat	98.26
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.12
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.04
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.93
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.83
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.82
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.8
KOG0522	560	consensus Ankyrin repeat protein [General function	97.8
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.72
KOG0522	560	consensus Ankyrin repeat protein [General function	97.7
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.7
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.46
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.43
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.08
KOG2384	223	consensus Major histocompatibility complex protein	97.06
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.06
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.04
KOG0511	516	consensus Ankyrin repeat protein [General function	96.56
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.24
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.18
KOG2384	223	consensus Major histocompatibility complex protein	95.97
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.69
KOG0520	975	consensus Uncharacterized conserved protein, conta	95.57
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	95.06
KOG2505	591	consensus Ankyrin repeat protein [General function	94.89
KOG0511	516	consensus Ankyrin repeat protein [General function	91.48
KOG2505	591	consensus Ankyrin repeat protein [General function	87.1

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.8e-26  Score=205.15  Aligned_cols=133  Identities=19%  Similarity=0.202  Sum_probs=106.8

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhh-CCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKS-YPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      ..|..||||||.||..|+.|+|+.|+.+ ++++ +.++..|+||||||+.+|.              +.+|..|.||||-
T Consensus        67 dkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHR  145 (226)
T KOG4412|consen   67 DKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHR  145 (226)
T ss_pred             CccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHH
Confidence            3377899999999999999999999999 8887 8999999999999998876              7889999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhh
Q 039657          228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVK  307 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~  307 (507)
                      ||.-|..+             ++++|+..+    +.+|.+|+.|+||||.|...|+.++..+               .|+
T Consensus       146 AAavGklk-------------vie~Li~~~----a~~n~qDk~G~TpL~~al~e~~~d~a~l---------------LV~  193 (226)
T KOG4412|consen  146 AAAVGKLK-------------VIEYLISQG----APLNTQDKYGFTPLHHALAEGHPDVAVL---------------LVR  193 (226)
T ss_pred             HHhccchh-------------hHHHHHhcC----CCCCcccccCccHHHHHHhccCchHHHH---------------HHH
Confidence            99999999             455555545    5689999999999999977777664210               111


Q ss_pred             ccCCccccccccCCCCCcccccccc
Q 039657          308 KSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       308 ~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                         ...+....|++| ||+.++...
T Consensus       194 ---~gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  194 ---AGADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             ---hccceeeccccC-chHHHHHHH
Confidence               234667888888 998776544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=3.9e-24  Score=222.57  Aligned_cols=130  Identities=22%  Similarity=0.215  Sum_probs=111.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcC
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMG  232 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g  232 (507)
                      -+.||||+||++|++.+|+.|+++|+++ +.+|.+|.||||+|++.++              +.+|.+|+||||+||.+|
T Consensus       111 l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg  189 (600)
T KOG0509|consen  111 LGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKG  189 (600)
T ss_pred             CCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhc
Confidence            4899999999999999999999999998 9999999999999999998              899999999999999999


Q ss_pred             CHHHHHHHHhhCCchHHHHHHHhccccccccccccc-CCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCC
Q 039657          233 VTEMVEQILDTFPANQYLQALLNRKILGESIFRQVD-SQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMP  311 (507)
Q Consensus       233 ~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D-~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~  311 (507)
                      +...++.||+-+                 +.++.+| ++||||||+|+..|+.+.+.+                ++  ..
T Consensus       190 ~~~~v~~LL~f~-----------------a~~~~~d~~~g~TpLHwa~~~gN~~~v~L----------------l~--~g  234 (600)
T KOG0509|consen  190 FALFVRRLLKFG-----------------ASLLLTDDNHGNTPLHWAVVGGNLTAVKL----------------LL--EG  234 (600)
T ss_pred             ccHHHHHHHHhc-----------------ccccccccccCCchHHHHHhcCCcceEeh----------------hh--hc
Confidence            999666666543                 3456666 999999999999999887632                01  12


Q ss_pred             ccccccccCCCCCcccccccc
Q 039657          312 RHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       312 ~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      ..+.+..|.+|+||++++.+.
T Consensus       235 ~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  235 GADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CCcccccccCCCCHHHHHHHh
Confidence            235578888899999999776

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=9.2e-24  Score=223.51  Aligned_cols=114  Identities=25%  Similarity=0.306  Sum_probs=98.9

Q ss_pred             CCCcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC----------------cccCCCC
Q 039657          158 NGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN----------------AQQSGRK  221 (507)
Q Consensus       158 ~~~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~----------------~~~d~~g  221 (507)
                      ..-++..|.+|.||||+||+.|+.+.|+.|+..++++ +.+++++.||||.||..|.                +..|..|
T Consensus       263 kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g  341 (929)
T KOG0510|consen  263 KELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHG  341 (929)
T ss_pred             HHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccC
Confidence            3445677999999999999999999999999999998 8999999999999999976                7789999


Q ss_pred             CCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccc--cccCCCCcHHHHHHhcCCCcccc
Q 039657          222 ETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFR--QVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       222 ~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in--~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      .||||+|+++||.++|+.||+.++.                ..+  ..|.+|+||||+||+.|+...++
T Consensus       342 ~tpLHlaa~~gH~~v~qlLl~~GA~----------------~~~~~e~D~dg~TaLH~Aa~~g~~~av~  394 (929)
T KOG0510|consen  342 MTPLHLAAKSGHDRVVQLLLNKGAL----------------FLNMSEADSDGNTALHLAAKYGNTSAVQ  394 (929)
T ss_pred             CCchhhhhhcCHHHHHHHHHhcChh----------------hhcccccccCCchhhhHHHHhccHHHHH
Confidence            9999999999999966666655543                112  55999999999999999988764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.9e-23  Score=233.47  Aligned_cols=273  Identities=13%  Similarity=0.073  Sum_probs=182.5

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHH---HHHHHHHHHHHHHhcCC
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCV---LLFKVMMKAMLIVLGLG   78 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~g   78 (507)
                      +|.+|.+|.||||+||+       ..+...++.++-+.+.+...+...  ..|..+....   +.++.+...   ...+.
T Consensus       171 vn~~d~~G~TpLh~Aa~-------~G~~~iv~~LL~~Gad~n~~~~~g--~t~L~~A~~~~~~~ivk~Ll~~---~~~~~  238 (682)
T PHA02876        171 VNAKDIYCITPIHYAAE-------RGNAKMVNLLLSYGADVNIIALDD--LSVLECAVDSKNIDTIKAIIDN---RSNIN  238 (682)
T ss_pred             CCCCCCCCCCHHHHHHH-------CCCHHHHHHHHHCCCCcCccCCCC--CCHHHHHHHcCCHHHHHHHHhc---CCCCC
Confidence            67899999999999995       456788888888877665433221  2333332221   122222111   11111


Q ss_pred             chhhhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCC-CCcccccccccccccccc
Q 039657           79 IWRINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVP-DTGEISHQNKSTNHKKIE  157 (507)
Q Consensus        79 ~~~i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p-~~~e~~~~~~~~~~~~~~  157 (507)
                      .....-+.+.+..+   .+.++.|++.+...+..+.          .+.++.+.....+.. +..++         ....
T Consensus       239 ~~~~~L~~ai~~~~---~~~~~~Ll~~g~~vn~~d~----------~g~TpLh~Aa~~~~~~~iv~l---------Ll~~  296 (682)
T PHA02876        239 KNDLSLLKAIRNED---LETSLLLYDAGFSVNSIDD----------CKNTPLHHASQAPSLSRLVPK---------LLER  296 (682)
T ss_pred             CCcHHHHHHHHcCC---HHHHHHHHHCCCCCCCCCC----------CCCCHHHHHHhCCCHHHHHHH---------HHHC
Confidence            11222223333333   4667778888655432221          122333322211110 00000         1112


Q ss_pred             CCCcccCCCCCChHHHHHHHcC-CHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------cccCCCC
Q 039657          158 NGSAQSGTEKMDNKILLAAKIG-VTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------AQQSGRK  221 (507)
Q Consensus       158 ~~~~~~~d~~g~TpLh~Aa~~G-~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------~~~d~~g  221 (507)
                      ..+.+.+|..|.||||+|+..| +.++++.|++.++++ +.+|..|+||||+|+..++               +.+|..|
T Consensus       297 gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G  375 (682)
T PHA02876        297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCD  375 (682)
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCC
Confidence            2345677889999999999999 599999999999997 8899999999999998654               7889999


Q ss_pred             CCccchhhhcCCHHHHHHHHhhCCc---------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHh
Q 039657          222 ETPMLIAARMGVTEMVEQILDTFPA---------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAK  280 (507)
Q Consensus       222 ~TpLH~Aa~~g~~~iv~~Ll~~~~~---------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~  280 (507)
                      +||||+|+..|+.++|+.|++++++                     ..++++|++.+    +.+|.+|.+|+||||+|+.
T Consensus       376 ~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g----adin~~d~~G~TpLh~Aa~  451 (682)
T PHA02876        376 KTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG----ANVNSKNKDLSTPLHYACK  451 (682)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC----CCCCcCCCCCChHHHHHHH
Confidence            9999999999999999999999877                     12478888887    7899999999999999999


Q ss_pred             cC-CCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccc
Q 039657          281 FG-DHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTE  331 (507)
Q Consensus       281 ~g-~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~  331 (507)
                      .| +.+++++                +  ...+.+++.+|..|.||+.++.+
T Consensus       452 ~~~~~~iv~l----------------L--l~~Gad~n~~d~~g~tpl~~a~~  485 (682)
T PHA02876        452 KNCKLDVIEM----------------L--LDNGADVNAINIQNQYPLLIALE  485 (682)
T ss_pred             hCCcHHHHHH----------------H--HHCCCCCCCCCCCCCCHHHHHHH
Confidence            77 4455421                1  11345678999999999998764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.1e-24  Score=190.91  Aligned_cols=139  Identities=21%  Similarity=0.206  Sum_probs=112.0

Q ss_pred             CcccCC-CCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------cccCCCCCC
Q 039657          160 SAQSGT-EKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------AQQSGRKET  223 (507)
Q Consensus       160 ~~~~~d-~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------~~~d~~g~T  223 (507)
                      +++.++ ++|+||||+||+.|+.++|+.|++.-.-.++.+|..||||||+||..|+               +..++.|.|
T Consensus        29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T  108 (226)
T KOG4412|consen   29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQT  108 (226)
T ss_pred             hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcc
Confidence            445454 4999999999999999999999963323357889999999999999987               678899999


Q ss_pred             ccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHh
Q 039657          224 PMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWY  303 (507)
Q Consensus       224 pLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~  303 (507)
                      |||+||..|+.+|             +.+|+..+    +.++.+|..|.||||-||..|..+++.+              
T Consensus       109 ~LHyAagK~r~eI-------------aqlLle~g----a~i~~kD~~~qtplHRAAavGklkvie~--------------  157 (226)
T KOG4412|consen  109 CLHYAAGKGRLEI-------------AQLLLEKG----ALIRIKDKQGQTPLHRAAAVGKLKVIEY--------------  157 (226)
T ss_pred             eehhhhcCChhhH-------------HHHHHhcC----CCCcccccccCchhHHHHhccchhhHHH--------------
Confidence            9999999999995             45555555    6789999999999999999999887632              


Q ss_pred             hhhhccCCccccccccCCCCCccccc-cccc
Q 039657          304 QFVKKSMPRHFFTRFNDNGKTPKEVF-TETH  333 (507)
Q Consensus       304 ~~v~~~~~~~~~~~~N~~G~Tpldl~-~~~~  333 (507)
                        +..  .....+..|+.|.||++.+ .+.|
T Consensus       158 --Li~--~~a~~n~qDk~G~TpL~~al~e~~  184 (226)
T KOG4412|consen  158 --LIS--QGAPLNTQDKYGFTPLHHALAEGH  184 (226)
T ss_pred             --HHh--cCCCCCcccccCccHHHHHHhccC
Confidence              111  1234578999999999988 3444

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=5e-23  Score=204.70  Aligned_cols=196  Identities=11%  Similarity=0.016  Sum_probs=144.3

Q ss_pred             ccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchhh
Q 039657            3 NSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRI   82 (507)
Q Consensus         3 ~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~i   82 (507)
                      +.+|.+|.||||+++.       ..+....+.+|-++..++..+ +   ..|.+                          
T Consensus        24 ~~~D~~G~TpLh~Aa~-------~g~~eiv~~Ll~~ga~~n~~d-~---~TpLh--------------------------   66 (284)
T PHA02791         24 FKADVHGHSALYYAIA-------DNNVRLVCTLLNAGALKNLLE-N---EFPLH--------------------------   66 (284)
T ss_pred             CCCCCCCCcHHHHHHH-------cCCHHHHHHHHHCcCCCcCCC-C---CCHHH--------------------------
Confidence            4679999999999994       345677787877766543321 1   12211                          


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCcc
Q 039657           83 NHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSAQ  162 (507)
Q Consensus        83 ~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~  162 (507)
                         ++....|   .++++.|+++++..                                                    +
T Consensus        67 ---~Aa~~g~---~eiV~lLL~~Gadv----------------------------------------------------n   88 (284)
T PHA02791         67 ---QAATLED---TKIVKILLFSGMDD----------------------------------------------------S   88 (284)
T ss_pred             ---HHHHCCC---HHHHHHHHHCCCCC----------------------------------------------------C
Confidence               1222223   47889999885433                                                    3


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCC-cHHHHHHHcCC------------cccC-CCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEK-NLVLLTFEKKN------------AQQS-GRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~-tpLh~A~~~~~------------~~~d-~~g~TpLH~A  228 (507)
                      .+|..|+||||+||..|+.++++.|++.++++ +.+|..|+ ||||+|+..++            +..| ..|+||||+|
T Consensus        89 ~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~A  167 (284)
T PHA02791         89 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHIT  167 (284)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHH
Confidence            34678999999999999999999999999997 77888885 89999999887            2234 3589999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcH-HHHHHhcCCCcccccCchhhhhHHHHHHhhhhh
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSA-LHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVK  307 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTp-LHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~  307 (507)
                      +.+|+.++|+.||++++                 .+|.+|..|.|| ||+|+..|+.+++++               .+ 
T Consensus       168 a~~g~~eiv~lLL~~gA-----------------d~n~~d~~g~t~~L~~Aa~~~~~e~v~l---------------Ll-  214 (284)
T PHA02791        168 IKNGHVDMMILLLDYMT-----------------STNTNNSLLFIPDIKLAIDNKDLEMLQA---------------LF-  214 (284)
T ss_pred             HHcCCHHHHHHHHHCCC-----------------CCCcccCCCCChHHHHHHHcCCHHHHHH---------------HH-
Confidence            99999997666666644                 578999999987 999999999887642               01 


Q ss_pred             ccCCccccccccCCCCCcccccc
Q 039657          308 KSMPRHFFTRFNDNGKTPKEVFT  330 (507)
Q Consensus       308 ~~~~~~~~~~~N~~G~Tpldl~~  330 (507)
                        ..+.+++.+|.+ .||++.+.
T Consensus       215 --~~Ga~in~~~~~-~~~l~~~e  234 (284)
T PHA02791        215 --KYDINIYSVNLE-NVLLDDAE  234 (284)
T ss_pred             --HCCCCCccCccc-CccCCCHH
Confidence              124456788874 48886653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.89  E-value=7.1e-23  Score=217.02  Aligned_cols=149  Identities=14%  Similarity=0.155  Sum_probs=122.1

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCcc
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPM  225 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpL  225 (507)
                      +.+.+|..|.||||+|+..|+.++|+.|++.++++ +.+|.+|.||||+|+..++              +.+|..|+|||
T Consensus       116 d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL  194 (434)
T PHA02874        116 DVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL  194 (434)
T ss_pred             CCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            34566888999999999999999999999999997 8899999999999999887              67889999999


Q ss_pred             chhhhcCCHHHHHHHHhhCCc-------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcC-CCc
Q 039657          226 LIAARMGVTEMVEQILDTFPA-------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG-DHR  285 (507)
Q Consensus       226 H~Aa~~g~~~iv~~Ll~~~~~-------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g-~~~  285 (507)
                      |+|+..|+.++|++|++.+++                   ...+.+|+. +    +.+|.+|.+|+||||+|+..+ +.+
T Consensus       195 ~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~-~----~~in~~d~~G~TpLh~A~~~~~~~~  269 (434)
T PHA02874        195 HNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLIN-N----ASINDQDIDGSTPLHHAINPPCDID  269 (434)
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHc-C----CCCCCcCCCCCCHHHHHHhcCCcHH
Confidence            999999999999999999876                   123455553 3    568999999999999999876 445


Q ss_pred             ccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccccc
Q 039657          286 PWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       286 ~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      ++++                +  ...+.+.+.+|++|+||++++...
T Consensus       270 iv~~----------------L--l~~gad~n~~d~~g~TpL~~A~~~  298 (434)
T PHA02874        270 IIDI----------------L--LYHKADISIKDNKGENPIDTAFKY  298 (434)
T ss_pred             HHHH----------------H--HHCcCCCCCCCCCCCCHHHHHHHh
Confidence            4321                1  113446789999999999998643

>PF13962 PGG: Domain of unknown function

Probab=99.89  E-value=3.5e-23  Score=177.94  Aligned_cols=109  Identities=36%  Similarity=0.626  Sum_probs=97.0

Q ss_pred             ccccccccchhhHHHHHHHhhhhhcccccCCcccCC---CCCcccCCCc-hhHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Q 039657          341 KEWLPKTSESCSVVAALIATVAFATSATVPGGVDQE---SGKPIFENEP-VFNIFSISSLVALCFSVTALVFFLTILTSR  416 (507)
Q Consensus       341 ~~~l~~~~~s~~vva~LiATv~Faa~~t~PgG~~~~---~G~~~l~~~~-~f~~F~i~n~ia~~~S~~~~~~~l~~l~~~  416 (507)
                      +||++++++++++||+|||||||+|++++|||++++   .|+|++.+++ .|.+|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            479999999999999999999999999999999765   6999999888 999999999999999999999887422   


Q ss_pred             ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhchhe
Q 039657          417 YQEKDFVKDLPRKLLLGLTTLFTSIAAILISFCSGHSFM  455 (507)
Q Consensus       417 ~~~~~f~~~l~~~l~~~~~~l~~si~~m~~aF~~g~~~~  455 (507)
                         .++.+..++.+.++..++++++.+|++||++|+|+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               345555666778889999999999999999999875

>PHA02946 ankyin-like protein; Provisional

Probab=99.89  E-value=9.5e-23  Score=216.05  Aligned_cols=226  Identities=14%  Similarity=0.088  Sum_probs=142.3

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      +|.+|.+|.||||++|+       ..+....+.+|-+.+.++..+.  +...|.+|...                     
T Consensus        65 vn~~d~~G~TpLh~Aa~-------~g~~eiv~lLL~~GAdin~~d~--~g~TpLh~A~~---------------------  114 (446)
T PHA02946         65 PNETDDDGNYPLHIASK-------INNNRIVAMLLTHGADPNACDK--QHKTPLYYLSG---------------------  114 (446)
T ss_pred             CCccCCCCCCHHHHHHH-------cCCHHHHHHHHHCcCCCCCCCC--CCCCHHHHHHH---------------------
Confidence            57889999999999994       4456788888888877754332  11234433211                     


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhccccc--ccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCC
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKY--EDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENG  159 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~--~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~  159 (507)
                               .+....++++.|+++++..+.  +..|.           ++... ......+..++         ......
T Consensus       115 ---------~~~~~~e~v~lLl~~Gadin~~~d~~g~-----------tpL~a-a~~~~~~vv~~---------Ll~~ga  164 (446)
T PHA02946        115 ---------TDDEVIERINLLVQYGAKINNSVDEEGC-----------GPLLA-CTDPSERVFKK---------IMSIGF  164 (446)
T ss_pred             ---------cCCchHHHHHHHHHcCCCcccccCCCCC-----------cHHHH-HHCCChHHHHH---------HHhccc
Confidence                     011123566667776655542  11111           11110 00000000000         011123


Q ss_pred             CcccCCCCCChHHHHHHHcCC--HHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------cccCCCCC
Q 039657          160 SAQSGTEKMDNKILLAAKIGV--TEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------AQQSGRKE  222 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~--~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------~~~d~~g~  222 (507)
                      +.+.+|+.|+||||+|+..++  .++++.|++.++++ +.+|.+|+||||+|+..+.               +.+|.+|+
T Consensus       165 d~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~  243 (446)
T PHA02946        165 EARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGD  243 (446)
T ss_pred             cccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCC
Confidence            446678899999999988554  69999999999998 8999999999999998762               78899999


Q ss_pred             CccchhhhcCC-HHHHHHHHhhCCch--HHHHHHHhcccc-cccccccc-cCCCCcHHHHHHhcCCCcccc
Q 039657          223 TPMLIAARMGV-TEMVEQILDTFPAN--QYLQALLNRKIL-GESIFRQV-DSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       223 TpLH~Aa~~g~-~~iv~~Ll~~~~~~--~vv~~Ll~~~~~-~~~~in~~-D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      ||||+|+.+++ .++++.|++++.+.  ....+....+.. ....++.. +..|+||||+|++.|+.++++
T Consensus       244 TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk  314 (446)
T PHA02946        244 SPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVK  314 (446)
T ss_pred             CHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHH
Confidence            99999999998 58999999987540  001111111100 00012222 246889999999999988875

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.1e-22  Score=218.03  Aligned_cols=220  Identities=16%  Similarity=0.161  Sum_probs=161.5

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      .+..|.+|.||||+|++       ..+...++.++-+...++..+....  .|.++...                     
T Consensus        28 ~~~~~~~~~t~L~~A~~-------~~~~~ivk~Ll~~g~~~~~~~~~~~--t~L~~~~~---------------------   77 (480)
T PHA03100         28 NDYSYKKPVLPLYLAKE-------ARNIDVVKILLDNGADINSSTKNNS--TPLHYLSN---------------------   77 (480)
T ss_pred             chhhhcccchhhhhhhc-------cCCHHHHHHHHHcCCCCCCccccCc--CHHHHHHH---------------------
Confidence            45678899999999994       4556788888888776654332111  12111000                     


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCc
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSA  161 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~  161 (507)
                         ..+...   ...++++.|+++++..                                                    
T Consensus        78 ---~~a~~~---~~~~iv~~Ll~~ga~i----------------------------------------------------   99 (480)
T PHA03100         78 ---IKYNLT---DVKEIVKLLLEYGANV----------------------------------------------------   99 (480)
T ss_pred             ---HHHHhh---chHHHHHHHHHCCCCC----------------------------------------------------
Confidence               001222   2458899999986544                                                    


Q ss_pred             ccCCCCCChHHHHHH--HcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcC--C--------------cccCCCCCC
Q 039657          162 QSGTEKMDNKILLAA--KIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKK--N--------------AQQSGRKET  223 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa--~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~--~--------------~~~d~~g~T  223 (507)
                      +..|..|.||||+|+  ..|+.++++.|++.++++ +..|..|+||||+|+..+  +              +.+|.+|.|
T Consensus       100 ~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~t  178 (480)
T PHA03100        100 NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYT  178 (480)
T ss_pred             CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCC
Confidence            223556888999998  888899999888888886 778888889999888888  4              567778889


Q ss_pred             ccchhhhcCCHHHHHHHHhhCCc----------------------------hHHHHHHHhcccccccccccccCCCCcHH
Q 039657          224 PMLIAARMGVTEMVEQILDTFPA----------------------------NQYLQALLNRKILGESIFRQVDSQGNSAL  275 (507)
Q Consensus       224 pLH~Aa~~g~~~iv~~Ll~~~~~----------------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpL  275 (507)
                      |||+|+..|+.+++++|++++++                            -.++++|++.|    +.+|.+|..|+|||
T Consensus       179 pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g----~din~~d~~g~TpL  254 (480)
T PHA03100        179 PLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG----VPINIKDVYGFTPL  254 (480)
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC----CCCCCCCCCCCCHH
Confidence            99999999999999988888765                            01577788777    78899999999999


Q ss_pred             HHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccccc
Q 039657          276 HLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       276 HlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      |+|+..|+.++++.             +  ++   .+.+.+.+|.+|+||++++...
T Consensus       255 ~~A~~~~~~~iv~~-------------L--l~---~gad~n~~d~~g~tpl~~A~~~  293 (480)
T PHA03100        255 HYAVYNNNPEFVKY-------------L--LD---LGANPNLVNKYGDTPLHIAILN  293 (480)
T ss_pred             HHHHHcCCHHHHHH-------------H--HH---cCCCCCccCCCCCcHHHHHHHh
Confidence            99999999776531             0  11   2336789999999999998754

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.1e-22  Score=217.99  Aligned_cols=133  Identities=13%  Similarity=0.081  Sum_probs=106.7

Q ss_pred             cccCCCC-CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCcc
Q 039657          161 AQSGTEK-MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPM  225 (507)
Q Consensus       161 ~~~~d~~-g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpL  225 (507)
                      .+.+|.. |.||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|..|+|||
T Consensus       160 in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpL  238 (477)
T PHA02878        160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPL  238 (477)
T ss_pred             CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            3555666 999999999999999999999999997 8899999999999999887              77899999999


Q ss_pred             chhhhc-CCHHHHHHHHhhCCchHHHHHHHhcccccccccccccC-CCCcHHHHHHhcCCCcccccCchhhhhHHHHHHh
Q 039657          226 LIAARM-GVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDS-QGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWY  303 (507)
Q Consensus       226 H~Aa~~-g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~-~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~  303 (507)
                      |+|+.. ++.+++++|++++                 +.+|.+|. .|+||||+|+  ++.+++++              
T Consensus       239 h~A~~~~~~~~iv~~Ll~~g-----------------advn~~~~~~g~TpLh~A~--~~~~~v~~--------------  285 (477)
T PHA02878        239 HISVGYCKDYDILKLLLEHG-----------------VDVNAKSYILGLTALHSSI--KSERKLKL--------------  285 (477)
T ss_pred             HHHHHhcCCHHHHHHHHHcC-----------------CCCCccCCCCCCCHHHHHc--cCHHHHHH--------------
Confidence            999976 7899666666554                 45677775 7999999993  33333211              


Q ss_pred             hhhhccCCccccccccCCCCCccccccc
Q 039657          304 QFVKKSMPRHFFTRFNDNGKTPKEVFTE  331 (507)
Q Consensus       304 ~~v~~~~~~~~~~~~N~~G~Tpldl~~~  331 (507)
                        +  ...+.+++..|.+|.||++++..
T Consensus       286 --L--l~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        286 --L--LEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             --H--HHCCCCCCCcCCCCCCHHHHHHH
Confidence              1  11345678899999999998865

>PHA03095 ankyrin-like protein; Provisional

Probab=99.87  E-value=5.8e-22  Score=211.87  Aligned_cols=241  Identities=15%  Similarity=0.134  Sum_probs=153.7

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      +|.+|..|.||||++++..    +......++.++.+...++..+.  ....|.++..+..                   
T Consensus        40 vn~~~~~g~t~Lh~a~~~~----~~~~~~iv~~Ll~~Gadin~~~~--~g~TpLh~A~~~~-------------------   94 (471)
T PHA03095         40 VNFRGEYGKTPLHLYLHYS----SEKVKDIVRLLLEAGADVNAPER--CGFTPLHLYLYNA-------------------   94 (471)
T ss_pred             cccCCCCCCCHHHHHHHhc----CCChHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcC-------------------
Confidence            5788999999999999643    23466778888888887765543  2223443333211                   


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCC--CCCCCccccccccccccccccCC
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETL--PVPDTGEISHQNKSTNHKKIENG  159 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~--~~p~~~e~~~~~~~~~~~~~~~~  159 (507)
                                +  ..++++.|+++++..+..+.          .+.++.+.....  ..++..++         ......
T Consensus        95 ----------~--~~~iv~lLl~~ga~in~~~~----------~g~tpLh~a~~~~~~~~~iv~~---------Ll~~ga  143 (471)
T PHA03095         95 ----------T--TLDVIKLLIKAGADVNAKDK----------VGRTPLHVYLSGFNINPKVIRL---------LLRKGA  143 (471)
T ss_pred             ----------C--cHHHHHHHHHcCCCCCCCCC----------CCCCHHHHHhhCCcCCHHHHHH---------HHHcCC
Confidence                      0  24677777777665533221          112233222210  01111100         001122


Q ss_pred             CcccCCCCCChHHHHHHHcC--CHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC----------------cccCCCC
Q 039657          160 SAQSGTEKMDNKILLAAKIG--VTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN----------------AQQSGRK  221 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G--~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~----------------~~~d~~g  221 (507)
                      +.+..|..|.||||+|+..+  +.++++.|++.++++ ...|..|+||||+|+....                +.+|..|
T Consensus       144 d~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g  222 (471)
T PHA03095        144 DVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLG  222 (471)
T ss_pred             CCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCC
Confidence            34556778888888887765  577888888888877 4448888888888776532                5678888


Q ss_pred             CCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHH
Q 039657          222 ETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIK  301 (507)
Q Consensus       222 ~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~  301 (507)
                      +||||+||..|+.+.           .++..|+..+    ..+|.+|.+|+||||+|+..|+.++++.            
T Consensus       223 ~tpLh~Aa~~~~~~~-----------~~v~~ll~~g----~din~~d~~g~TpLh~A~~~~~~~~v~~------------  275 (471)
T PHA03095        223 NTPLHSMATGSSCKR-----------SLVLPLLIAG----ISINARNRYGQTPLHYAAVFNNPRACRR------------  275 (471)
T ss_pred             CCHHHHHHhcCCchH-----------HHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCHHHHHH------------
Confidence            888888888877531           1445555555    6789999999999999999999776531            


Q ss_pred             HhhhhhccCCccccccccCCCCCcccccccc
Q 039657          302 WYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       302 w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                         .+   ..+.+.+.+|++|+||++++...
T Consensus       276 ---LL---~~gad~n~~~~~g~tpl~~A~~~  300 (471)
T PHA03095        276 ---LI---ALGADINAVSSDGNTPLSLMVRN  300 (471)
T ss_pred             ---HH---HcCCCCcccCCCCCCHHHHHHHh
Confidence               01   13456789999999999998655

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.86  E-value=3.1e-21  Score=212.09  Aligned_cols=158  Identities=10%  Similarity=0.036  Sum_probs=112.0

Q ss_pred             ccCCCCCChHHHHHHH--cCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHc--------------CC-----------
Q 039657          162 QSGTEKMDNKILLAAK--IGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEK--------------KN-----------  214 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~--~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~--------------~~-----------  214 (507)
                      +.+|..|+||||+|+.  .|+.++++.|++.++++ +.+|..|+||||+|+..              ++           
T Consensus       311 N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        311 HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            4557789999999875  46899999999999997 89999999999998652              22           


Q ss_pred             ---cccCCCCCCccch----hhhcCCHHHHHHHHhhCCchHH----HH--------------------------HHHhcc
Q 039657          215 ---AQQSGRKETPMLI----AARMGVTEMVEQILDTFPANQY----LQ--------------------------ALLNRK  257 (507)
Q Consensus       215 ---~~~d~~g~TpLH~----Aa~~g~~~iv~~Ll~~~~~~~v----v~--------------------------~Ll~~~  257 (507)
                         +.+|..|+||||.    |...++.+++++|++....+.+    ++                          ++....
T Consensus       390 ADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~  469 (764)
T PHA02716        390 ADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYE  469 (764)
T ss_pred             CCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhh
Confidence               7789999999993    3346889999999987532100    00                          000000


Q ss_pred             --------------cccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCC
Q 039657          258 --------------ILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGK  323 (507)
Q Consensus       258 --------------~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~  323 (507)
                                    ......+|.+|..|+||||+|+..|+.+.+.+           .-++.+.  -.+.+++.+|++|+
T Consensus       470 ~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~-----------e~~k~LL--~~GADIN~~d~~G~  536 (764)
T PHA02716        470 PYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVM-----------DSFVYLL--SIQYNINIPTKNGV  536 (764)
T ss_pred             hccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhH-----------HHHHHHH--hCCCCCcccCCCCC
Confidence                          01123467889999999999999998764310           0011111  13456789999999


Q ss_pred             Cccccccccc
Q 039657          324 TPKEVFTETH  333 (507)
Q Consensus       324 Tpldl~~~~~  333 (507)
                      ||++++....
T Consensus       537 TPLh~A~~~g  546 (764)
T PHA02716        537 TPLMLTMRNN  546 (764)
T ss_pred             CHHHHHHHcC
Confidence            9999998754

>PHA02946 ankyin-like protein; Provisional

Probab=99.85  E-value=4e-21  Score=203.69  Aligned_cols=146  Identities=14%  Similarity=0.144  Sum_probs=121.0

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC----------------c-ccCCCCCCc
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN----------------A-QQSGRKETP  224 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~----------------~-~~d~~g~Tp  224 (507)
                      |.+|..|.||||+||+.|+.++|+.|+++++++ +.+|.+|+||||+|+..++                + ..|.+|.||
T Consensus        66 n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tp  144 (446)
T PHA02946         66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGP  144 (446)
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcH
Confidence            444778999999999999999999999999997 8999999999999987653                2 468899999


Q ss_pred             cchhhhcCCHHHHHHHHhhCCc----------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcC
Q 039657          225 MLIAARMGVTEMVEQILDTFPA----------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG  282 (507)
Q Consensus       225 LH~Aa~~g~~~iv~~Ll~~~~~----------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g  282 (507)
                      || ||..|+.++++.|++.+.+                      ..++++|++.|    +.+|.+|.+|+||||+|+..|
T Consensus       145 L~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G----adin~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        145 LL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLG----ISPSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             HH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC----CCCcccCCCCCCHHHHHHHcC
Confidence            98 7778999999999998765                      13578888887    789999999999999999987


Q ss_pred             C--CcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccccc
Q 039657          283 D--HRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       283 ~--~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      .  .+++                   +.+.+..+++.+|++|+||++++.+.
T Consensus       220 ~~~~~iv-------------------~lLl~gadin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        220 VKNVDII-------------------NLLLPSTDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             CCcHHHH-------------------HHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            4  3332                   11223457789999999999998765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.2e-20  Score=210.85  Aligned_cols=133  Identities=17%  Similarity=0.122  Sum_probs=91.1

Q ss_pred             ccccCCCCcHHHHHHHcCC---------------cccCCCCCCccchhhhcC-CHHHHHHHHhhCCc-------------
Q 039657          196 QELNTSEKNLVLLTFEKKN---------------AQQSGRKETPMLIAARMG-VTEMVEQILDTFPA-------------  246 (507)
Q Consensus       196 ~~~d~~G~tpLh~A~~~~~---------------~~~d~~g~TpLH~Aa~~g-~~~iv~~Ll~~~~~-------------  246 (507)
                      +..|..|+||||+|+..++               +.+|.+|+||||+|+.+| ..++++.|+..+.+             
T Consensus       267 n~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh  346 (682)
T PHA02876        267 NSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLH  346 (682)
T ss_pred             CCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHH
Confidence            3446678888888887665               567788888888888888 48888888887665             


Q ss_pred             --------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccccc---Cch-----------hhhhHHH-HHHh
Q 039657          247 --------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLL---PGA-----------ALQMQWE-IKWY  303 (507)
Q Consensus       247 --------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~---~ga-----------al~~~~e-l~w~  303 (507)
                              ..++.+|++.+    +.+|.+|..|+||||+|+..|+.++++.   .|+           +++.... -...
T Consensus       347 ~A~~~~~~~~iv~lLl~~g----adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~  422 (682)
T PHA02876        347 QASTLDRNKDIVITLLELG----ANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPY  422 (682)
T ss_pred             HHHHhCCcHHHHHHHHHcC----CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHH
Confidence                    12466677776    7889999999999999999999877652   121           2221110 0001


Q ss_pred             hhhhcc-CCccccccccCCCCCcccccccc
Q 039657          304 QFVKKS-MPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       304 ~~v~~~-~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      ..++.+ ..+.+++.+|++|+||++++...
T Consensus       423 ~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~  452 (682)
T PHA02876        423 MSVKTLIDRGANVNSKNKDLSTPLHYACKK  452 (682)
T ss_pred             HHHHHHHhCCCCCCcCCCCCChHHHHHHHh
Confidence            112211 13456789999999999999764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.84  E-value=6.4e-21  Score=203.84  Aligned_cols=212  Identities=14%  Similarity=0.116  Sum_probs=143.0

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      +|.+|.+|.||||++++      .|......+.++-+...++..+...  ..|.++...                     
T Consensus        76 in~~~~~g~TpLh~A~~------~~~~~~iv~lLl~~ga~in~~~~~g--~tpLh~a~~---------------------  126 (471)
T PHA03095         76 VNAPERCGFTPLHLYLY------NATTLDVIKLLIKAGADVNAKDKVG--RTPLHVYLS---------------------  126 (471)
T ss_pred             CCCCCCCCCCHHHHHHH------cCCcHHHHHHHHHcCCCCCCCCCCC--CCHHHHHhh---------------------
Confidence            57889999999999996      4446677788888877765544211  122221110                     


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCC--CCCCccccccccccccccccCC
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLP--VPDTGEISHQNKSTNHKKIENG  159 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~--~p~~~e~~~~~~~~~~~~~~~~  159 (507)
                               ......++++.|++++++....+.          .+.++.+......  ..+..++         ......
T Consensus       127 ---------~~~~~~~iv~~Ll~~gad~~~~d~----------~g~tpL~~a~~~~~~~~~iv~~---------Ll~~g~  178 (471)
T PHA03095        127 ---------GFNINPKVIRLLLRKGADVNALDL----------YGMTPLAVLLKSRNANVELLRL---------LIDAGA  178 (471)
T ss_pred             ---------CCcCCHHHHHHHHHcCCCCCccCC----------CCCCHHHHHHHcCCCCHHHHHH---------HHHcCC
Confidence                     000123567777777655432221          1112221111100  0000000         001122


Q ss_pred             CcccCCCCCChHHHHHHHc--CCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC----------------cccCCCC
Q 039657          160 SAQSGTEKMDNKILLAAKI--GVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN----------------AQQSGRK  221 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~--G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~----------------~~~d~~g  221 (507)
                      +.+.+|..|.||||+|+..  ++.++++.|++.+.++ +.+|..|+||||+|+..++                +.+|.+|
T Consensus       179 ~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g  257 (471)
T PHA03095        179 DVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYG  257 (471)
T ss_pred             CCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCC
Confidence            3344577899999999975  7899999999999997 8999999999999998774                6789999


Q ss_pred             CCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          222 ETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       222 ~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +||||+|+..|+.++|++||+.             |    +++|.+|.+|+||||+|+..|+.+++.
T Consensus       258 ~TpLh~A~~~~~~~~v~~LL~~-------------g----ad~n~~~~~g~tpl~~A~~~~~~~~v~  307 (471)
T PHA03095        258 QTPLHYAAVFNNPRACRRLIAL-------------G----ADINAVSSDGNTPLSLMVRNNNGRAVR  307 (471)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc-------------C----CCCcccCCCCCCHHHHHHHhCCHHHHH
Confidence            9999999999999966555554             4    567999999999999999999988764

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.7e-20  Score=197.44  Aligned_cols=135  Identities=15%  Similarity=0.115  Sum_probs=107.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      +..|.||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..|+              +.+|..|+||||+|+.
T Consensus        99 ~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~  177 (413)
T PHA02875         99 YKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA  177 (413)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence            456999999999999999999999999997 8899999999999999887              6789999999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCC-cHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhcc
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGN-SALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKS  309 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~Gn-TpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~  309 (507)
                      .|+.+++++|++.++                 .+|..|..|. ||||+|+..|+.+++++               .++..
T Consensus       178 ~g~~eiv~~Ll~~ga-----------------~~n~~~~~~~~t~l~~A~~~~~~~iv~~---------------Ll~~g  225 (413)
T PHA02875        178 KGDIAICKMLLDSGA-----------------NIDYFGKNGCVAALCYAIENNKIDIVRL---------------FIKRG  225 (413)
T ss_pred             cCCHHHHHHHHhCCC-----------------CCCcCCCCCCchHHHHHHHcCCHHHHHH---------------HHHCC
Confidence            999996666666544                 4677888775 89999999999887642               11111


Q ss_pred             CCccccccccCCCCCcccccccc
Q 039657          310 MPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       310 ~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      .........+++|.||++++...
T Consensus       226 ad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        226 ADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             cCcchHhhcCCCchHHHHHHHhh
Confidence            11222234577899999887543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=1.5e-20  Score=199.25  Aligned_cols=117  Identities=21%  Similarity=0.267  Sum_probs=101.1

Q ss_pred             cCCCcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCc--------------ccccccCCCCcHHHHHHHcCC--------
Q 039657          157 ENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPA--------------VIQELNTSEKNLVLLTFEKKN--------  214 (507)
Q Consensus       157 ~~~~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~--------------~~~~~d~~G~tpLh~A~~~~~--------  214 (507)
                      +...+|.-+..|.||||.|+..|+.++++.+|+.+..              +++..|++|.||||+||+.|+        
T Consensus       214 r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll  293 (929)
T KOG0510|consen  214 RQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLL  293 (929)
T ss_pred             hhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHH
Confidence            3445566688899999999999999999999998643              245679999999999999998        


Q ss_pred             ------cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          215 ------AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       215 ------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                            +.+++++.||||.||++|+.+.|+.||+ -++              ..++|..|-.|+||||+|++.||.++++
T Consensus       294 ~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~--------------~rllne~D~~g~tpLHlaa~~gH~~v~q  358 (929)
T KOG0510|consen  294 GFGASINSKNKDEESPLHFAAIYGRINTVERLLQ-ESD--------------TRLLNESDLHGMTPLHLAAKSGHDRVVQ  358 (929)
T ss_pred             HcCCcccccCCCCCCchHHHHHcccHHHHHHHHh-CcC--------------ccccccccccCCCchhhhhhcCHHHHHH
Confidence                  7889999999999999999998888887 333              2688999999999999999999988875

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.83  E-value=5.3e-20  Score=198.23  Aligned_cols=149  Identities=17%  Similarity=0.094  Sum_probs=116.7

Q ss_pred             ccCCCCCChHHHHHHHc---CCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcC--C--------------cc-cCCCC
Q 039657          162 QSGTEKMDNKILLAAKI---GVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKK--N--------------AQ-QSGRK  221 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~--~--------------~~-~d~~g  221 (507)
                      |.+|..|.||||.|+..   |+.++|+.|++.|+++.+.+|..|+||||+|++.+  +              +. .+..|
T Consensus       102 n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g  181 (494)
T PHA02989        102 NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYG  181 (494)
T ss_pred             CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccC
Confidence            34466799999988765   68999999999999975678999999999987653  2              33 57789


Q ss_pred             CCccchhhhcC----CHHHHHHHHhhCCc---------hH-----------------HHHHHHhcccccccccccccCCC
Q 039657          222 ETPMLIAARMG----VTEMVEQILDTFPA---------NQ-----------------YLQALLNRKILGESIFRQVDSQG  271 (507)
Q Consensus       222 ~TpLH~Aa~~g----~~~iv~~Ll~~~~~---------~~-----------------vv~~Ll~~~~~~~~~in~~D~~G  271 (507)
                      .||||+|+.++    +.++|++|++++.+         ..                 ++++|.+ +    +.+|.+|..|
T Consensus       182 ~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~----advn~~d~~G  256 (494)
T PHA02989        182 LTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-Y----IKINKKDKKG  256 (494)
T ss_pred             CChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-C----CCCCCCCCCC
Confidence            99999997765    89999999999876         01                 2233332 2    6789999999


Q ss_pred             CcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          272 NSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       272 nTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +||||+|+..|+.+++++               .++   .+.+++.+|++|.||++++....
T Consensus       257 ~TpL~~Aa~~~~~~~v~~---------------LL~---~Gadin~~d~~G~TpL~~A~~~~  300 (494)
T PHA02989        257 FNPLLISAKVDNYEAFNY---------------LLK---LGDDIYNVSKDGDTVLTYAIKHG  300 (494)
T ss_pred             CCHHHHHHHhcCHHHHHH---------------HHH---cCCCccccCCCCCCHHHHHHHcC
Confidence            999999999999887642               111   34567899999999999987653

>PHA02791 ankyrin-like protein; Provisional

Probab=99.82  E-value=7.1e-20  Score=182.16  Aligned_cols=127  Identities=16%  Similarity=0.108  Sum_probs=67.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCC-CccchhhhcC
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKE-TPMLIAARMG  232 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~-TpLH~Aa~~g  232 (507)
                      |+||||+|+..|+.++|+.|++.++++ +.+|.+|+||||+|+..++              +.++.+|+ ||||+||..|
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g  139 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN  139 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcC
Confidence            345555555555555555555555444 4445555555555555444              23344442 4555555555


Q ss_pred             CHHHHHHHHhhCCchHHHHHHHhccccccccccccc-CCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCC
Q 039657          233 VTEMVEQILDTFPANQYLQALLNRKILGESIFRQVD-SQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMP  311 (507)
Q Consensus       233 ~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D-~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~  311 (507)
                      +.++|++|++++++                   ..| ..|+||||+|++.|+.+++++               .++   .
T Consensus       140 ~~eivk~LL~~~~~-------------------~~d~~~g~TpLh~Aa~~g~~eiv~l---------------LL~---~  182 (284)
T PHA02791        140 DVSIVSYFLSEIPS-------------------TFDLAILLSCIHITIKNGHVDMMIL---------------LLD---Y  182 (284)
T ss_pred             CHHHHHHHHhcCCc-------------------ccccccCccHHHHHHHcCCHHHHHH---------------HHH---C
Confidence            55544444433221                   123 247888888888888776532               011   1


Q ss_pred             ccccccccCCCCCc-ccccccc
Q 039657          312 RHFFTRFNDNGKTP-KEVFTET  332 (507)
Q Consensus       312 ~~~~~~~N~~G~Tp-ldl~~~~  332 (507)
                      +.+.+.+|+.|.|| ++.+...
T Consensus       183 gAd~n~~d~~g~t~~L~~Aa~~  204 (284)
T PHA02791        183 MTSTNTNNSLLFIPDIKLAIDN  204 (284)
T ss_pred             CCCCCcccCCCCChHHHHHHHc
Confidence            23456777788877 7666544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.81  E-value=7.1e-20  Score=174.95  Aligned_cols=132  Identities=8%  Similarity=0.055  Sum_probs=101.2

Q ss_pred             CCCCChHHHHHHHcC--CHHHHHHHhhhCCccccccc-CCCCcHHHHHHHcC---C--------------cccCCCCCCc
Q 039657          165 TEKMDNKILLAAKIG--VTEMVDRFLKSYPAVIQELN-TSEKNLVLLTFEKK---N--------------AQQSGRKETP  224 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G--~~~~v~~Ll~~~~~~~~~~d-~~G~tpLh~A~~~~---~--------------~~~d~~g~Tp  224 (507)
                      |..|.||||+|+.++  +.++++.|++.++++ +.+| .+|+||||+|+..+   +              +.+|.+|.||
T Consensus        48 ~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~Tp  126 (209)
T PHA02859         48 NDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNL  126 (209)
T ss_pred             CccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            556899999999854  899999999999998 6665 58999999987642   2              7889999999


Q ss_pred             cchhhh--cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHH-HhcCCCcccccCchhhhhHHHHH
Q 039657          225 MLIAAR--MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLA-AKFGDHRPWLLPGAALQMQWEIK  301 (507)
Q Consensus       225 LH~Aa~--~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlA-a~~g~~~~v~~~gaal~~~~el~  301 (507)
                      ||+|+.  .++.+++++|+++             +    +.++.+|.+|+||||.| +..++.+++.+            
T Consensus       127 Lh~a~~~~~~~~~iv~~Li~~-------------g----adin~~d~~g~t~Lh~~a~~~~~~~iv~~------------  177 (209)
T PHA02859        127 LHMYMCNFNVRINVIKLLIDS-------------G----VSFLNKDFDNNNILYSYILFHSDKKIFDF------------  177 (209)
T ss_pred             HHHHHHhccCCHHHHHHHHHc-------------C----CCcccccCCCCcHHHHHHHhcCCHHHHHH------------
Confidence            999876  4689955555554             4    55789999999999964 55666665431            


Q ss_pred             HhhhhhccCCccccccccCCCCCcccccccc
Q 039657          302 WYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       302 w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                         .++   .+.+++.+|..|+||++++...
T Consensus       178 ---Ll~---~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        178 ---LTS---LGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             ---HHH---cCCCCCCCCCCCCCHHHHHhhh
Confidence               011   2346689999999999998764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.81  E-value=1.3e-19  Score=192.01  Aligned_cols=171  Identities=15%  Similarity=0.141  Sum_probs=130.2

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      +|.+|.+|.||||.+++       .......+.++-+...++..+...  ..|.++                        
T Consensus       117 ~n~~~~~g~T~Lh~A~~-------~~~~~~v~~Ll~~gad~n~~d~~g--~tpLh~------------------------  163 (434)
T PHA02874        117 VNIKDAELKTFLHYAIK-------KGDLESIKMLFEYGADVNIEDDNG--CYPIHI------------------------  163 (434)
T ss_pred             CCCCCCCCccHHHHHHH-------CCCHHHHHHHHhCCCCCCCcCCCC--CCHHHH------------------------
Confidence            46789999999999995       345667777777766554332111  122221                        


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCc
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSA  161 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~  161 (507)
                           +.+..   ..++++.|+++++..                                                    
T Consensus       164 -----A~~~~---~~~iv~~Ll~~g~~~----------------------------------------------------  183 (434)
T PHA02874        164 -----AIKHN---FFDIIKLLLEKGAYA----------------------------------------------------  183 (434)
T ss_pred             -----HHHCC---cHHHHHHHHHCCCCC----------------------------------------------------
Confidence                 11122   247889999986433                                                    


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC------------cccCCCCCCccchhh
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~------------~~~d~~g~TpLH~Aa  229 (507)
                      +..+..|.||||+|+..|+.++++.|++.++++ +.++.+|+||||+|+..+.            +.+|.+|+||||+|+
T Consensus       184 n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~  262 (434)
T PHA02874        184 NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAI  262 (434)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            223567999999999999999999999999997 7889999999999998764            788999999999999


Q ss_pred             hcC-CHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCC
Q 039657          230 RMG-VTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD  283 (507)
Q Consensus       230 ~~g-~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~  283 (507)
                      ..+ +.+++++|++.             +    +.++.+|..|+||||+|++.++
T Consensus       263 ~~~~~~~iv~~Ll~~-------------g----ad~n~~d~~g~TpL~~A~~~~~  300 (434)
T PHA02874        263 NPPCDIDIIDILLYH-------------K----ADISIKDNKGENPIDTAFKYIN  300 (434)
T ss_pred             hcCCcHHHHHHHHHC-------------c----CCCCCCCCCCCCHHHHHHHhCC
Confidence            976 78955555554             4    5679999999999999999874

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.80  E-value=1.4e-19  Score=199.13  Aligned_cols=144  Identities=10%  Similarity=-0.000  Sum_probs=92.3

Q ss_pred             ccCCCCCChHHHHHHHcCC--HHHHHHHhhhCCcccccccCCCCcHHHHHHH----------------------------
Q 039657          162 QSGTEKMDNKILLAAKIGV--TEMVDRFLKSYPAVIQELNTSEKNLVLLTFE----------------------------  211 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~--~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~----------------------------  211 (507)
                      +.+|..|.||||+|++.|+  .++|+.|++.++++ +.+|.+|+||||+|+.                            
T Consensus       206 N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~  284 (764)
T PHA02716        206 NLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMI  284 (764)
T ss_pred             CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhh
Confidence            3446678999999999885  48999999999987 8889999999997642                            


Q ss_pred             ---------cCC--------------cccCCCCCCccchhhh--cCCHHHHHHHHhhCCchHHHHHHHhccccccccccc
Q 039657          212 ---------KKN--------------AQQSGRKETPMLIAAR--MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQ  266 (507)
Q Consensus       212 ---------~~~--------------~~~d~~g~TpLH~Aa~--~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~  266 (507)
                               .|+              +.+|.+|+||||+|+.  +++.+             ++++|++.|    +.+|.
T Consensus       285 L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~e-------------IVklLLe~G----ADIN~  347 (764)
T PHA02716        285 LHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTD-------------IIKLLHEYG----NDLNE  347 (764)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCch-------------HHHHHHHcC----CCCcc
Confidence                     122              4456666666666543  34566             455555555    67899


Q ss_pred             ccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhcc-CCccccccccCCCCCcccc
Q 039657          267 VDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKS-MPRHFFTRFNDNGKTPKEV  328 (507)
Q Consensus       267 ~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~-~~~~~~~~~N~~G~Tpldl  328 (507)
                      +|..|+||||+|+.....  ++..........   ..+.++.+ ..+.+++.+|+.|+||++.
T Consensus       348 kD~~G~TPLH~A~~~lav--~~~ld~~~~~~~---~~eVVklLL~~GADIn~kn~~G~TPLh~  405 (764)
T PHA02716        348 PDNIGNTVLHTYLSMLSV--VNILDPETDNDI---RLDVIQCLISLGADITAVNCLGYTPLTS  405 (764)
T ss_pred             CCCCCCCHHHHHHHhhhh--hccccccccccC---hHHHHHHHHHCCCCCCCcCCCCCChHHH
Confidence            999999999998763110  000000000000   00111111 1345778999999999984

>PHA02798 ankyrin-like protein; Provisional

Probab=99.80  E-value=2.2e-19  Score=193.17  Aligned_cols=152  Identities=9%  Similarity=0.072  Sum_probs=119.1

Q ss_pred             CCCcccCCCCCChHHHHHHHcC---CHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC-----------------ccc
Q 039657          158 NGSAQSGTEKMDNKILLAAKIG---VTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN-----------------AQQ  217 (507)
Q Consensus       158 ~~~~~~~d~~g~TpLh~Aa~~G---~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~-----------------~~~  217 (507)
                      ..++|.+|..|+||||+|+..|   +.++++.|++.|+++ +.+|.+|.||||+|++.++                 +.+
T Consensus        99 GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~  177 (489)
T PHA02798         99 GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH  177 (489)
T ss_pred             CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc
Confidence            3467888999999999999876   789999999999997 8899999999999998764                 233


Q ss_pred             -CCCCCCccchhhhc----CCHHHHHHHHhhCCc---------hH------------------HHHHHHhcccccccccc
Q 039657          218 -SGRKETPMLIAARM----GVTEMVEQILDTFPA---------NQ------------------YLQALLNRKILGESIFR  265 (507)
Q Consensus       218 -d~~g~TpLH~Aa~~----g~~~iv~~Ll~~~~~---------~~------------------vv~~Ll~~~~~~~~~in  265 (507)
                       +..|.||||.++.+    ++.+++++|++++.+         ..                  ++++|.+ +    .++|
T Consensus       178 ~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~----~dvN  252 (489)
T PHA02798        178 NNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-Y----IDIN  252 (489)
T ss_pred             cCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-c----CCCC
Confidence             45789999988764    589999999998764         01                  1223322 2    5789


Q ss_pred             cccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          266 QVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       266 ~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      .+|..|+||||+|+..|+.++++.               .++   .+.+++.+|.+|+||++++.+.+
T Consensus       253 ~~d~~G~TPL~~A~~~~~~~~v~~---------------LL~---~GAdin~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        253 QVDELGFNPLYYSVSHNNRKIFEY---------------LLQ---LGGDINIITELGNTCLFTAFENE  302 (489)
T ss_pred             CcCcCCccHHHHHHHcCcHHHHHH---------------HHH---cCCcccccCCCCCcHHHHHHHcC
Confidence            999999999999999999876532               011   34567899999999999987653

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.1e-18  Score=183.83  Aligned_cols=143  Identities=15%  Similarity=0.116  Sum_probs=81.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------cccCCCCCCccchhhhc
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------AQQSGRKETPMLIAARM  231 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------~~~d~~g~TpLH~Aa~~  231 (507)
                      .|.||||+|+..|+.++++.|++.+++. +..+.+|+||||.|+..|+               +..+.+|+||||+|+..
T Consensus        34 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  112 (413)
T PHA02875         34 DGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATIL  112 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHh
Confidence            3555555555555555555555555543 4444555555555555544               12234455555555555


Q ss_pred             CCHHHHHHHHhhCCc--------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCc
Q 039657          232 GVTEMVEQILDTFPA--------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPG  291 (507)
Q Consensus       232 g~~~iv~~Ll~~~~~--------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~g  291 (507)
                      |+.++|++|++++++                    ..++++|++.+    +.++.+|..|+||||+|+..|+.++++.  
T Consensus       113 ~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g----~~~~~~d~~g~TpL~~A~~~g~~eiv~~--  186 (413)
T PHA02875        113 KKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK----ACLDIEDCCGCTPLIIAMAKGDIAICKM--  186 (413)
T ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC----CCCCCCCCCCCCHHHHHHHcCCHHHHHH--
Confidence            555555555554443                    01355666555    5678889999999999999998776531  


Q ss_pred             hhhhhHHHHHHhhhhhccCCccccccccCCCC-Ccccccccc
Q 039657          292 AALQMQWEIKWYQFVKKSMPRHFFTRFNDNGK-TPKEVFTET  332 (507)
Q Consensus       292 aal~~~~el~w~~~v~~~~~~~~~~~~N~~G~-Tpldl~~~~  332 (507)
                                   .++   .+.+.+..+.+|. ||++++...
T Consensus       187 -------------Ll~---~ga~~n~~~~~~~~t~l~~A~~~  212 (413)
T PHA02875        187 -------------LLD---SGANIDYFGKNGCVAALCYAIEN  212 (413)
T ss_pred             -------------HHh---CCCCCCcCCCCCCchHHHHHHHc
Confidence                         011   2334456666664 677655443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.78  E-value=6.1e-19  Score=197.63  Aligned_cols=153  Identities=20%  Similarity=0.237  Sum_probs=101.1

Q ss_pred             CcccCCCCCChHHHHHHHcC-CHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC------------------------
Q 039657          160 SAQSGTEKMDNKILLAAKIG-VTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN------------------------  214 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G-~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~------------------------  214 (507)
                      +.+..+..|.||+|+|+..| ..+....+++.+.++ +..-..|.||||+|++.|+                        
T Consensus       432 ~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~  510 (1143)
T KOG4177|consen  432 SPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTP  510 (1143)
T ss_pred             ChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccch
Confidence            33444555566666666665 555555555555554 5555556666665555554                        


Q ss_pred             -----------------------cccCCCCCCccchhhhcCCHHHHHHHHhhCCc--------------------hHHHH
Q 039657          215 -----------------------AQQSGRKETPMLIAARMGVTEMVEQILDTFPA--------------------NQYLQ  251 (507)
Q Consensus       215 -----------------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~--------------------~~vv~  251 (507)
                                             +.++.+|.||||.||.+|+.++|++||+++++                    +.++.
T Consensus       511 lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~  590 (1143)
T KOG4177|consen  511 LHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAE  590 (1143)
T ss_pred             hhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHH
Confidence                                   57788888999999999999988888888877                    34678


Q ss_pred             HHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccC-CccccccccCCCCCcccccc
Q 039657          252 ALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSM-PRHFFTRFNDNGKTPKEVFT  330 (507)
Q Consensus       252 ~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~-~~~~~~~~N~~G~Tpldl~~  330 (507)
                      +|+++|    +.+|..|.+|+||||.|+..|++++++..              .+.... ........|..|.||.++..
T Consensus       591 LLlk~G----A~vna~d~~g~TpL~iA~~lg~~~~~k~l--------------~~~~~~~~~~~~~~e~~~g~~p~~v~e  652 (1143)
T KOG4177|consen  591 LLLKHG----ASVNAADLDGFTPLHIAVRLGYLSVVKLL--------------KVVTATPAATDPVKENRKGAVPEDVAE  652 (1143)
T ss_pred             HHHHcC----CCCCcccccCcchhHHHHHhcccchhhHH--------------HhccCccccccchhhhhcccChhhHHH
Confidence            888887    77888888888888888888887765320              000001 11124567888899988865


Q ss_pred             c
Q 039657          331 E  331 (507)
Q Consensus       331 ~  331 (507)
                      +
T Consensus       653 ~  653 (1143)
T KOG4177|consen  653 E  653 (1143)
T ss_pred             H
Confidence            4

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.2e-18  Score=186.84  Aligned_cols=110  Identities=14%  Similarity=0.127  Sum_probs=90.6

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCC------CcHHHHHHHcCC----------------cccC
Q 039657          161 AQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSE------KNLVLLTFEKKN----------------AQQS  218 (507)
Q Consensus       161 ~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G------~tpLh~A~~~~~----------------~~~d  218 (507)
                      .+.+|..|.||||+|+..|+.++++.|++.++++ +..+..|      .||||.|+..++                +.+|
T Consensus       169 in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d  247 (480)
T PHA03100        169 INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKD  247 (480)
T ss_pred             cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCC
Confidence            3455667899999999999999999999988887 6777777      888998887765                5778


Q ss_pred             CCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       219 ~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      ..|+||||+|+.+|+.+++++|++.             |    +++|.+|..|+||||+|+..++.++++
T Consensus       248 ~~g~TpL~~A~~~~~~~iv~~Ll~~-------------g----ad~n~~d~~g~tpl~~A~~~~~~~iv~  300 (480)
T PHA03100        248 VYGFTPLHYAVYNNNPEFVKYLLDL-------------G----ANPNLVNKYGDTPLHIAILNNNKEIFK  300 (480)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHc-------------C----CCCCccCCCCCcHHHHHHHhCCHHHHH
Confidence            8899999999999999955555554             4    457999999999999999999987764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.77  E-value=1.3e-18  Score=187.12  Aligned_cols=111  Identities=11%  Similarity=0.056  Sum_probs=82.7

Q ss_pred             CcccCCCCCChHHHHHHHcCC---HHHHHHHhhhCCcccccc-cCCCCcHHHHHHHcC----------------------
Q 039657          160 SAQSGTEKMDNKILLAAKIGV---TEMVDRFLKSYPAVIQEL-NTSEKNLVLLTFEKK----------------------  213 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~---~~~v~~Ll~~~~~~~~~~-d~~G~tpLh~A~~~~----------------------  213 (507)
                      +.+..|..|.||||+|++.|+   .++++.|++.++++ +.. |..|.||||.++..+                      
T Consensus       137 dvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~  215 (489)
T PHA02798        137 DTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKE  215 (489)
T ss_pred             CccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc-ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccC
Confidence            345556677777777777776   77777777777776 333 456777777654321                      


Q ss_pred             -----------------------------------CcccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhccc
Q 039657          214 -----------------------------------NAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKI  258 (507)
Q Consensus       214 -----------------------------------~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~  258 (507)
                                                         -+.+|..|+||||+||.+|+.+++++|++.             | 
T Consensus       216 ~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~-------------G-  281 (489)
T PHA02798        216 NKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQL-------------G-  281 (489)
T ss_pred             CccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHc-------------C-
Confidence                                               045788999999999999999955555554             4 


Q ss_pred             ccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          259 LGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       259 ~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                         +++|.+|..|+||||+|+..++.+++.
T Consensus       282 ---Adin~~d~~G~TpL~~A~~~~~~~iv~  308 (489)
T PHA02798        282 ---GDINIITELGNTCLFTAFENESKFIFN  308 (489)
T ss_pred             ---CcccccCCCCCcHHHHHHHcCcHHHHH
Confidence               568999999999999999999977664

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.76  E-value=5e-18  Score=162.19  Aligned_cols=99  Identities=8%  Similarity=0.037  Sum_probs=82.5

Q ss_pred             CCCChHHHHHHHc---CCHHHHHHHhhhCCcccccccCCCCcHHHHHHHc--CC--------------cccCCCCCCccc
Q 039657          166 EKMDNKILLAAKI---GVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEK--KN--------------AQQSGRKETPML  226 (507)
Q Consensus       166 ~~g~TpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~--~~--------------~~~d~~g~TpLH  226 (507)
                      ..|.||||+|+..   |+.++++.|+++++++ +.+|.+|+||||+|+..  ++              +.+|.+|.||||
T Consensus        85 ~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh  163 (209)
T PHA02859         85 DNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY  163 (209)
T ss_pred             CCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHH
Confidence            3689999998864   5799999999999998 89999999999998764  23              678999999999


Q ss_pred             h-hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcC
Q 039657          227 I-AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG  282 (507)
Q Consensus       227 ~-Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g  282 (507)
                      . |+..|+.+++++|+             +.|    +.++.+|..|.||||+|...+
T Consensus       164 ~~a~~~~~~~iv~~Ll-------------~~G----adi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        164 SYILFHSDKKIFDFLT-------------SLG----IDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHhcCCHHHHHHHH-------------HcC----CCCCCCCCCCCCHHHHHhhhh
Confidence            5 56788999555555             444    568999999999999999764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.76  E-value=8.1e-18  Score=175.70  Aligned_cols=138  Identities=16%  Similarity=0.112  Sum_probs=111.8

Q ss_pred             CCcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCccccccc-CCCCcHHHHHHHcCC--------------cccCCCCCC
Q 039657          159 GSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELN-TSEKNLVLLTFEKKN--------------AQQSGRKET  223 (507)
Q Consensus       159 ~~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d-~~G~tpLh~A~~~~~--------------~~~d~~g~T  223 (507)
                      .+++..|++|.|+||+||.++++++++.|+++++++ +..+ .-|.||||+||..|+              +.+|.+|.|
T Consensus        69 ~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~  147 (600)
T KOG0509|consen   69 ESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLT  147 (600)
T ss_pred             cCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCc
Confidence            345667889999999999999999999999999998 6666 778999999999998              789999999


Q ss_pred             ccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHh
Q 039657          224 PMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWY  303 (507)
Q Consensus       224 pLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~  303 (507)
                      |||+||+.|+.-+|-+||.+             +    .++|.+|.+|.||||+||.+|+...++         +-+++ 
T Consensus       148 ~lHla~~~~~~~~vayll~~-------------~----~d~d~~D~~grTpLmwAaykg~~~~v~---------~LL~f-  200 (600)
T KOG0509|consen  148 PLHLAAQFGHTALVAYLLSK-------------G----ADIDLRDNNGRTPLMWAAYKGFALFVR---------RLLKF-  200 (600)
T ss_pred             HHHHHHHhCchHHHHHHHHh-------------c----ccCCCcCCCCCCHHHHHHHhcccHHHH---------HHHHh-
Confidence            99999999999965555554             4    568999999999999999999855221         11111 


Q ss_pred             hhhhccCCcccccccc-CCCCCcccccccc
Q 039657          304 QFVKKSMPRHFFTRFN-DNGKTPKEVFTET  332 (507)
Q Consensus       304 ~~v~~~~~~~~~~~~N-~~G~Tpldl~~~~  332 (507)
                              ...+..++ ++|.|||+.+...
T Consensus       201 --------~a~~~~~d~~~g~TpLHwa~~~  222 (600)
T KOG0509|consen  201 --------GASLLLTDDNHGNTPLHWAVVG  222 (600)
T ss_pred             --------cccccccccccCCchHHHHHhc
Confidence                    11233455 8999999998665

>PHA02730 ankyrin-like protein; Provisional

Probab=99.75  E-value=5e-18  Score=183.71  Aligned_cols=152  Identities=11%  Similarity=-0.009  Sum_probs=113.9

Q ss_pred             ccCCCcccCCCCCChHHHH--HHHcCCHHHHHHHhh--------------------------------hCCccccc----
Q 039657          156 IENGSAQSGTEKMDNKILL--AAKIGVTEMVDRFLK--------------------------------SYPAVIQE----  197 (507)
Q Consensus       156 ~~~~~~~~~d~~g~TpLh~--Aa~~G~~~~v~~Ll~--------------------------------~~~~~~~~----  197 (507)
                      +...++|.+|..|+||||+  |+..|+.|+|+.|++                                .+.|. ..    
T Consensus       223 s~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~  301 (672)
T PHA02730        223 DNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLL  301 (672)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-HHHHHH
Confidence            4456788999999999994  666788999999999                                55554 23    


Q ss_pred             ----------------ccCCCCc---------------------HHHHHHHcCC-----------------cccCCCCCC
Q 039657          198 ----------------LNTSEKN---------------------LVLLTFEKKN-----------------AQQSGRKET  223 (507)
Q Consensus       198 ----------------~d~~G~t---------------------pLh~A~~~~~-----------------~~~d~~g~T  223 (507)
                                      .|..|.+                     .||.=.+.++                 +. +..|+|
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~-k~~G~T  380 (672)
T PHA02730        302 IEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK-TTDNNY  380 (672)
T ss_pred             hhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc-CCCCCc
Confidence                            5666755                     5554444441                 44 479999


Q ss_pred             ccchhhhcCC----HHHHHHHHhhCCc-----------hH-----------------------HHHHHHhcccccccccc
Q 039657          224 PMLIAARMGV----TEMVEQILDTFPA-----------NQ-----------------------YLQALLNRKILGESIFR  265 (507)
Q Consensus       224 pLH~Aa~~g~----~~iv~~Ll~~~~~-----------~~-----------------------vv~~Ll~~~~~~~~~in  265 (507)
                      |||+|+.+++    .++|++|++++++           ..                       ++++|+..|    +++|
T Consensus       381 pLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G----ADIN  456 (672)
T PHA02730        381 PLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM----DDID  456 (672)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc----cchh
Confidence            9999999885    8999999999752           10                       257777777    7899


Q ss_pred             cccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccC-CCCCccccccc
Q 039657          266 QVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFND-NGKTPKEVFTE  331 (507)
Q Consensus       266 ~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~-~G~Tpldl~~~  331 (507)
                      ++|..|+||||+|+..++.+++.+                +  ...+.+++.+|+ .|.||++.+..
T Consensus       457 akD~~G~TPLh~Aa~~~~~eive~----------------L--I~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        457 MIDNENKTLLYYAVDVNNIQFARR----------------L--LEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             ccCCCCCCHHHHHHHhCCHHHHHH----------------H--HHCCCCCCCCCCcCCcCHHHHHHH
Confidence            999999999999999998766531                1  112446678886 59999998864

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.75  E-value=6.1e-18  Score=181.45  Aligned_cols=100  Identities=12%  Similarity=0.052  Sum_probs=83.8

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHc-CC--------------cccCC-CCCCccc
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEK-KN--------------AQQSG-RKETPML  226 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~-~~--------------~~~d~-~g~TpLH  226 (507)
                      .+|..|.||||.|+..|+.++++.|++.++++ +.+|..|+||||+|+.. ++              +.++. .|.||||
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh  274 (477)
T PHA02878        196 IPDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH  274 (477)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHH
Confidence            34667999999999999999999999999997 88999999999999975 33              44554 7999999


Q ss_pred             hhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcC
Q 039657          227 IAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG  282 (507)
Q Consensus       227 ~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g  282 (507)
                      +|  .++.+++++|++             .|    +++|.+|.+|+||||+|+..+
T Consensus       275 ~A--~~~~~~v~~Ll~-------------~g----adin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        275 SS--IKSERKLKLLLE-------------YG----ADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             HH--ccCHHHHHHHHH-------------CC----CCCCCcCCCCCCHHHHHHHHc
Confidence            99  567885555554             44    568999999999999999864

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.75  E-value=5.4e-18  Score=182.65  Aligned_cols=243  Identities=13%  Similarity=0.073  Sum_probs=155.7

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCC--c----hhhHHHHHHHHHHHHHHHh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPP--N----YATCVLLFKVMMKAMLIVL   75 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~--~----~~~~~~~~~~~~~~~~~~~   75 (507)
                      ||.+ .+|.||||..+.     +.+.+....+.+|-+.+.++..+..+++++..  +    .....+.++.+......+.
T Consensus        29 vN~~-~~g~t~l~~~~~-----~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin  102 (494)
T PHA02989         29 VNEE-YRGNSILLLYLK-----RKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADIN  102 (494)
T ss_pred             cccc-cCCCCHHHHHHh-----cCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCC
Confidence            4566 569999987664     23446778899999999888665444433211  1    1234455555554332222


Q ss_pred             cCCchhhhHHH-HHHHHHhhHHHHHHHHHHhhccc-cccc-CCCCCCCCCCCCcccccccCCCC--CCCCCccccccccc
Q 039657           76 GLGIWRINHIT-EKKERHTWAIQVMCELVQHASLY-KYED-NGPKRRNSGPKEDEEAFSVSETL--PVPDTGEISHQNKS  150 (507)
Q Consensus        76 ~~g~~~i~~i~-~~k~~h~~a~~i~~~Ll~~~~~~-~~~~-~g~~~~~p~~~~d~~~~~~~~~~--~~p~~~e~~~~~~~  150 (507)
                      .....+..-+. +....+....++++.|+++|++. ...+ .|           .++.+.....  ..++..++      
T Consensus       103 ~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g-----------~tpLh~a~~~~~~~~~iv~~------  165 (494)
T PHA02989        103 LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRG-----------YNLLHMYLESFSVKKDVIKI------  165 (494)
T ss_pred             CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCC-----------CCHHHHHHHhccCCHHHHHH------
Confidence            11111222222 22222334568999999998876 3322 22           2233321111  11111111      


Q ss_pred             cccccccCCCccc-CCCCCChHHHHHHHcC----CHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC-----------
Q 039657          151 TNHKKIENGSAQS-GTEKMDNKILLAAKIG----VTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN-----------  214 (507)
Q Consensus       151 ~~~~~~~~~~~~~-~d~~g~TpLh~Aa~~G----~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~-----------  214 (507)
                         ......+.+. .+..|.||||.|+..+    +.++++.|++.|+++ +..|..|.||||.++..+.           
T Consensus       166 ---Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~~~~~~~~~~~~~~il~  241 (494)
T PHA02989        166 ---LLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESFLDNNKILSKKEFKVLN  241 (494)
T ss_pred             ---HHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHHHHhchhhcccchHHHH
Confidence               0011123333 4678999999998765    899999999999997 8888899999998775432           


Q ss_pred             --------cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcc
Q 039657          215 --------AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRP  286 (507)
Q Consensus       215 --------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~  286 (507)
                              +.+|.+|+||||+|+..|+.++|++|++.             |    +++|.+|..|+||||+|+..|+.++
T Consensus       242 ~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~-------------G----adin~~d~~G~TpL~~A~~~~~~~i  304 (494)
T PHA02989        242 FILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKL-------------G----DDIYNVSKDGDTVLTYAIKHGNIDM  304 (494)
T ss_pred             HHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc-------------C----CCccccCCCCCCHHHHHHHcCCHHH
Confidence                    67899999999999999999965555554             4    5689999999999999999999887


Q ss_pred             cc
Q 039657          287 WL  288 (507)
Q Consensus       287 v~  288 (507)
                      ++
T Consensus       305 v~  306 (494)
T PHA02989        305 LN  306 (494)
T ss_pred             HH
Confidence            64

>PHA02792 ankyrin-like protein; Provisional

Probab=99.73  E-value=2.2e-17  Score=177.01  Aligned_cols=247  Identities=11%  Similarity=0.045  Sum_probs=173.0

Q ss_pred             ccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchhh
Q 039657            3 NSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWRI   82 (507)
Q Consensus         3 ~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~i   82 (507)
                      |..+-+|+.|+|.+|.      ....+...+.||-+.++|+..+++.+  .|..|.+-                      
T Consensus        65 ~~~n~~~~~~~~~~~s------~n~~lElvk~LI~~GAdvN~~~n~~~--~~l~ya~~----------------------  114 (631)
T PHA02792         65 DYKNINDFDIFEYLCS------DNIDIELLKLLISKGLEINSIKNGIN--IVEKYATT----------------------  114 (631)
T ss_pred             CcCccCCccHHHHHHH------hcccHHHHHHHHHcCCCcccccCCCC--cceeEeec----------------------
Confidence            5567888999999985      56778889999999998876655433  34444422                      


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHhhcccccccC-CCCCCCCCCCCcccccccCCCCCCCCCcc---ccccccccccccccC
Q 039657           83 NHITEKKERHTWAIQVMCELVQHASLYKYEDN-GPKRRNSGPKEDEEAFSVSETLPVPDTGE---ISHQNKSTNHKKIEN  158 (507)
Q Consensus        83 ~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~-g~~~~~p~~~~d~~~~~~~~~~~~p~~~e---~~~~~~~~~~~~~~~  158 (507)
                            ...   ..++++.||++|+......+ |-   .|-.+             .-...|   +++. .+|+.-   +
T Consensus       115 ------~~~---~~eivk~Ll~~Gad~~~~~~~g~---~~~~~-------------~~~~~~~~~~~~~-~~~~~~---~  165 (631)
T PHA02792        115 ------SNP---NVDVFKLLLDKGIPTCSNIQYGY---KIIIE-------------QITRAEYYNWDDE-LDDYDY---D  165 (631)
T ss_pred             ------CCC---ChHHHHHHHHCCCCcccccccCc---chhhh-------------hcccccccchhhh-cccccc---c
Confidence                  112   24899999999876432222 21   11000             000000   1100 111111   2


Q ss_pred             CCcccCCCCCChHHHHHHHcC-------CHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC-----------------
Q 039657          159 GSAQSGTEKMDNKILLAAKIG-------VTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN-----------------  214 (507)
Q Consensus       159 ~~~~~~d~~g~TpLh~Aa~~G-------~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~-----------------  214 (507)
                      -..|.+|+.|.||||+|+.++       +.|+++.||++++++ +..|.+|.||||+|+...+                 
T Consensus       166 ~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~  244 (631)
T PHA02792        166 YTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGN  244 (631)
T ss_pred             cccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhcccccc
Confidence            244677889999999999999       899999999999998 8899999999999998772                 


Q ss_pred             --------------------------------------------------------------------------------
Q 039657          215 --------------------------------------------------------------------------------  214 (507)
Q Consensus       215 --------------------------------------------------------------------------------  214 (507)
                                                                                                      
T Consensus       245 ~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiI  324 (631)
T PHA02792        245 ELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVI  324 (631)
T ss_pred             chHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHH
Confidence                                                                                            


Q ss_pred             --------cccCCCCCCccchhhhcCCHHHHHHHHhhCCc------h-------------------HHHHHHHhcccccc
Q 039657          215 --------AQQSGRKETPMLIAARMGVTEMVEQILDTFPA------N-------------------QYLQALLNRKILGE  261 (507)
Q Consensus       215 --------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~------~-------------------~vv~~Ll~~~~~~~  261 (507)
                              +........++|.||.+|+.++|++|++++++      +                   .++++|++.+    
T Consensus       325 K~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G----  400 (631)
T PHA02792        325 KCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI----  400 (631)
T ss_pred             HHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC----
Confidence                    11122356678999999999999999999887      0                   0256666776    


Q ss_pred             cccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccc
Q 039657          262 SIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTE  331 (507)
Q Consensus       262 ~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~  331 (507)
                      +++|.+|..|+||||.|+..++.+++.+                +..  .+.+++.+|+.|+||++++..
T Consensus       401 ADIN~kD~~G~TPLh~Aa~~~n~eivel----------------LLs--~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        401 DDINKIDKHGRSILYYCIESHSVSLVEW----------------LID--NGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             CccccccccCcchHHHHHHcCCHHHHHH----------------HHH--CCCCCCCcCCCCCCHHHHHHH
Confidence            7899999999999999999998776421                111  244678999999999999754

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.72  E-value=2.7e-18  Score=167.78  Aligned_cols=138  Identities=20%  Similarity=0.187  Sum_probs=119.4

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC------------------cc-cCCCC
Q 039657          161 AQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN------------------AQ-QSGRK  221 (507)
Q Consensus       161 ~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~------------------~~-~d~~g  221 (507)
                      +|-.|.+|+|+||||+.++++++|+.||+.+-.-++.+|.-|.||+++|+-..-                  |. -.+.|
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~g  340 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHG  340 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhc
Confidence            466699999999999999999999999999987779999999999999874321                  33 35789


Q ss_pred             CCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHH
Q 039657          222 ETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIK  301 (507)
Q Consensus       222 ~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~  301 (507)
                      .|+|++|+.+|+.++|+.||.+++                 ++|.||.+|.|+|+.|+..||.+++++            
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgA-----------------dVNiQDdDGSTALMCA~EHGhkEivkl------------  391 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGA-----------------DVNIQDDDGSTALMCAAEHGHKEIVKL------------  391 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccC-----------------CCccccCCccHHHhhhhhhChHHHHHH------------
Confidence            999999999999998888888755                 579999999999999999999998742            


Q ss_pred             HhhhhhccCCccccccccCCCCCcccccccc
Q 039657          302 WYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       302 w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                           ...+|..+..+.|.+|-|++-|+-+.
T Consensus       392 -----LLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  392 -----LLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             -----HhccCcccceeecCCCchhhhhHHhc
Confidence                 23567888899999999999998765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.72  E-value=2.7e-17  Score=187.22  Aligned_cols=142  Identities=15%  Similarity=0.135  Sum_probs=99.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcC
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMG  232 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g  232 (507)
                      .+.++||.||..|+.++++.|++.++++ +.+|.+|+||||+||..|+              +.+|.+|+||||+|+..|
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhC
Confidence            3556677777777777777777776665 6667777777777776665              556666777777777777


Q ss_pred             CHHHHHHHHhhCCc------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhh
Q 039657          233 VTEMVEQILDTFPA------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAAL  294 (507)
Q Consensus       233 ~~~iv~~Ll~~~~~------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal  294 (507)
                      +.++++.|++....                  -.++++|++.|    +++|.+|.+|+||||+|+..|+.+++++     
T Consensus       603 ~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~G----adin~~d~~G~TpLh~A~~~g~~~iv~~-----  673 (823)
T PLN03192        603 HHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQG----LNVDSEDHQGATALQVAMAEDHVDMVRL-----  673 (823)
T ss_pred             CHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHCCcHHHHHH-----
Confidence            77777776655432                  12577777777    6789999999999999999999887642     


Q ss_pred             hhHHHHHHhhhhhccCCccccccccCCC-CCccccccc
Q 039657          295 QMQWEIKWYQFVKKSMPRHFFTRFNDNG-KTPKEVFTE  331 (507)
Q Consensus       295 ~~~~el~w~~~v~~~~~~~~~~~~N~~G-~Tpldl~~~  331 (507)
                                .++   .+.+++..|++| .||.++...
T Consensus       674 ----------Ll~---~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        674 ----------LIM---NGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             ----------HHH---cCCCCCCCCCCCCCCHHHHHHH
Confidence                      011   234567788887 899888754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.71  E-value=1.4e-17  Score=167.37  Aligned_cols=129  Identities=18%  Similarity=0.178  Sum_probs=108.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcC
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMG  232 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g  232 (507)
                      .|-+||-.|+..||+++|+.|+++++++ +.+..-..|||--||..|+              +..|+.|.|.||+||..|
T Consensus        83 egappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykG  161 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKG  161 (615)
T ss_pred             CCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccC
Confidence            6899999999999999999999999887 6677777899999999998              789999999999999999


Q ss_pred             CHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCc
Q 039657          233 VTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPR  312 (507)
Q Consensus       233 ~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~  312 (507)
                      |.+|+++|++.             |    +++|.++..|||+||.|+..|+.+++++                   ++..
T Consensus       162 h~~I~qyLle~-------------g----ADvn~ks~kGNTALH~caEsG~vdivq~-------------------Ll~~  205 (615)
T KOG0508|consen  162 HVDIAQYLLEQ-------------G----ADVNAKSYKGNTALHDCAESGSVDIVQL-------------------LLKH  205 (615)
T ss_pred             chHHHHHHHHh-------------C----CCcchhcccCchHHHhhhhcccHHHHHH-------------------HHhC
Confidence            99966665555             4    5689999999999999999999998642                   1112


Q ss_pred             cccccccCCCCCcccccccc
Q 039657          313 HFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       313 ~~~~~~N~~G~Tpldl~~~~  332 (507)
                      .....+|..|.||+-.+...
T Consensus       206 ga~i~~d~~GmtPL~~Aa~t  225 (615)
T KOG0508|consen  206 GAKIDVDGHGMTPLLLAAVT  225 (615)
T ss_pred             CceeeecCCCCchHHHHhhh
Confidence            23457888899999887654

>PHA02741 hypothetical protein; Provisional

Probab=99.69  E-value=4.9e-17  Score=150.15  Aligned_cols=110  Identities=16%  Similarity=0.150  Sum_probs=91.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhh------CCcccccccCCCCcHHHHHHHcCC------------------ccc
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKS------YPAVIQELNTSEKNLVLLTFEKKN------------------AQQ  217 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~------~~~~~~~~d~~G~tpLh~A~~~~~------------------~~~  217 (507)
                      +.+|..|.||||+||+.|+.++++.|+..      ++++ +.+|..|+||||+|+..++                  +.+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            45678899999999999999999998643      3454 8899999999999998874                  556


Q ss_pred             CC-CCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          218 SG-RKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       218 d~-~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      |. +|+||||+|+.+|+.+++++|++.            .+    ..++.+|.+|.||||+|+..++.+++.
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~------------~g----~~~~~~n~~g~tpL~~A~~~~~~~iv~  149 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQ------------PG----IDLHFCNADNKSPFELAIDNEDVAMMQ  149 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhC------------CC----CCCCcCCCCCCCHHHHHHHCCCHHHHH
Confidence            64 899999999999999966666642            12    457899999999999999999877653

>PHA02917 ankyrin-like protein; Provisional

Probab=99.66  E-value=6.2e-16  Score=170.69  Aligned_cols=49  Identities=14%  Similarity=0.030  Sum_probs=39.0

Q ss_pred             CCCCccchhhh-----------cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCc
Q 039657          220 RKETPMLIAAR-----------MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHR  285 (507)
Q Consensus       220 ~g~TpLH~Aa~-----------~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~  285 (507)
                      .+.||||+|+.           +|+.++|++|+++             |    +++|.+|.+|+||||+|+..|+.+
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~-------------G----advn~~d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH-------------G----IKPSSIDKNYCTALQYYIKSSHID  243 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHC-------------C----CCcccCCCCCCcHHHHHHHcCCCc
Confidence            44699999975           5689965555555             4    568999999999999999999864

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.65  E-value=5.5e-16  Score=174.14  Aligned_cols=246  Identities=16%  Similarity=0.177  Sum_probs=167.0

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      .+.+|..|.||||.+|+       -.+......++++|.+....++..  ..|+.|.......+++...-.         
T Consensus       113 ~~~~~~~~lTpLh~aa~-------~g~~~~~~~ll~~~a~~~~k~~~g--~t~l~~a~~~~~~~ll~~~~~---------  174 (1143)
T KOG4177|consen  113 IDARDRDGLTPLHCAAR-------KGHVQVIELLLQHGAPINIKTKNG--LSPLHMAAQVACARLLLEYKA---------  174 (1143)
T ss_pred             hhhcccCCCcchhhhcc-------cccHHHHHHHHHccCCCcccccCC--CCchhhhcchhhhHHhhhccc---------
Confidence            46789999999999994       344567788889997666544322  345555555333333222111         


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCc
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSA  161 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~  161 (507)
                      ...+..--..|..-.++++.|+....+..-..          ..+.++++.....+.=..+|+         ......++
T Consensus       175 ~d~l~~~~~~~~~~~~~~~ll~~~~~~~~a~~----------~~~~tpl~~a~~~nri~~~eL---------ll~~gadv  235 (1143)
T KOG4177|consen  175 PDYLRLHVAAHCGHARVAKLLLDKKADPNASA----------LNGFTPLHIACKKNRIKVVEL---------LLKHGADV  235 (1143)
T ss_pred             chhhhhhHHhhcchHHHHhhhhcccCCccccc----------cCCCCchhhhccccccceeee---------eeeccCcC
Confidence            11111122334444577777777754442222          122333333333222222222         33445567


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------------------
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------------------  214 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------------------  214 (507)
                      +..|+.|.||||.|+..|+.++++.++.+++.. +..|.+|.||+|.||..+.                           
T Consensus       236 ~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~-~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~  314 (1143)
T KOG4177|consen  236 SAKDESGLTPLHVAAFMGHLDIVKLLLQHGASV-NVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHI  314 (1143)
T ss_pred             CcccccCccHHHHHHhccchhHHHHHHhccccc-CcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhh
Confidence            788999999999999999999999999999997 8999999999999987764                           


Q ss_pred             --------------------cccCCCCCCccchhhhcCCHHHHHHHHhhCCc--------------------hHHHHHHH
Q 039657          215 --------------------AQQSGRKETPMLIAARMGVTEMVEQILDTFPA--------------------NQYLQALL  254 (507)
Q Consensus       215 --------------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~--------------------~~vv~~Ll  254 (507)
                                          +..+..|.||||+|+..|+.+++.+|....++                    -.++++++
T Consensus       315 a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll  394 (1143)
T KOG4177|consen  315 ASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLL  394 (1143)
T ss_pred             hcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhh
Confidence                                56677788888888888888877777777665                    12578888


Q ss_pred             hcccccccccccccCCCCcHHHHHHhcCCCccccc
Q 039657          255 NRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLL  289 (507)
Q Consensus       255 ~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~  289 (507)
                      ..+    +..|.++..|.||||+|+..++.+++++
T Consensus       395 ~~g----a~~~~~gk~gvTplh~aa~~~~~~~v~l  425 (1143)
T KOG4177|consen  395 EAG----ADPNSAGKNGVTPLHVAAHYGNPRVVKL  425 (1143)
T ss_pred             hcc----CCcccCCCCCcceeeehhhccCcceEEE
Confidence            887    6689999999999999999999887764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.65  E-value=5.7e-16  Score=167.84  Aligned_cols=122  Identities=9%  Similarity=0.039  Sum_probs=96.7

Q ss_pred             cCCCCCChHHHHHHHcC--CHHHHHHHhhhCCcc-cccccCCCCcHHHHHHHcCC-----------------ccc----C
Q 039657          163 SGTEKMDNKILLAAKIG--VTEMVDRFLKSYPAV-IQELNTSEKNLVLLTFEKKN-----------------AQQ----S  218 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G--~~~~v~~Ll~~~~~~-~~~~d~~G~tpLh~A~~~~~-----------------~~~----d  218 (507)
                      ..|..|+||||+||..|  +.|+|+.|++.+++. .+..|..+.+|||.++...+                 +..    +
T Consensus        72 ~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~  151 (672)
T PHA02730         72 CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYI  151 (672)
T ss_pred             ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhc
Confidence            34678999999999977  799999999996543 25577789999999888332                 111    1


Q ss_pred             -CCCCCccchhhhcCCHHHHHHHHhhCCc---------------h-------------------HHHHHHHhcccccccc
Q 039657          219 -GRKETPMLIAARMGVTEMVEQILDTFPA---------------N-------------------QYLQALLNRKILGESI  263 (507)
Q Consensus       219 -~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~---------------~-------------------~vv~~Ll~~~~~~~~~  263 (507)
                       ..|.+|+++|+.+++.+||++|++.+++               +                   .++++|++.|    +.
T Consensus       152 ~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~G----ad  227 (672)
T PHA02730        152 HCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNN----VS  227 (672)
T ss_pred             cccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCC----CC
Confidence             3789999999999999999999998765               1                   2488888888    89


Q ss_pred             cccccCCCCcHHHH--HHhcCCCcccc
Q 039657          264 FRQVDSQGNSALHL--AAKFGDHRPWL  288 (507)
Q Consensus       264 in~~D~~GnTpLHl--Aa~~g~~~~v~  288 (507)
                      +|.+|.+|.||||+  |...|+.+++.
T Consensus       228 IN~kd~~G~TpLh~~~~~~~~~~eiv~  254 (672)
T PHA02730        228 IHGRDEGGSLPIQYYWSCSTIDIEIVK  254 (672)
T ss_pred             CCCCCCCCCCHHHHHHHcCcccHHHHH
Confidence            99999999999995  55556666654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.65  E-value=3.2e-16  Score=144.26  Aligned_cols=110  Identities=17%  Similarity=0.128  Sum_probs=89.6

Q ss_pred             ccCCCCCChHHHHHHHcCCH----HHHHHHhhhCCcccccccCCCCcHHHHHHHcCC-----------------cccC-C
Q 039657          162 QSGTEKMDNKILLAAKIGVT----EMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN-----------------AQQS-G  219 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~----~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~-----------------~~~d-~  219 (507)
                      +..+.++.++||.||+.|+.    ++++.|++.++.+ +.+|.+|+||||+|+..++                 +.+| .
T Consensus        14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~   92 (166)
T PHA02743         14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELG   92 (166)
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCC
Confidence            34566788999999999998    5566677777765 8889999999999998764                 5677 5


Q ss_pred             CCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          220 RKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       220 ~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      .|+||||+|+.+|+.+++++|++.            .+    ..++.+|..|+||||+|+..++.++++
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll~~------------~g----ad~~~~d~~g~tpL~~A~~~~~~~iv~  145 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLCRQ------------LG----VNLGAINYQHETAYHIAYKMRDRRMME  145 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhc------------cC----CCccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            899999999999999966655531            23    567899999999999999999877653

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.64  E-value=1.1e-16  Score=152.05  Aligned_cols=118  Identities=22%  Similarity=0.271  Sum_probs=93.9

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHH
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQ  239 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~  239 (507)
                      +.|..|..|.+|||+||+.|+..+|+.|+.+++.+ +.                   .+....||||+||.+||.+||..
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarv-n~-------------------tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NS-------------------TNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhccccc-cc-------------------ccCCCCcchhhhhhcccHHHHHH
Confidence            45777999999999999999999999999999987 44                   34445677777999999997777


Q ss_pred             HHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCcccccccc
Q 039657          240 ILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFN  319 (507)
Q Consensus       240 Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N  319 (507)
                      ||+..                 +++|+.+..||||||+||..|..++..          ++        ...+..+++.|
T Consensus        86 ll~~k-----------------advnavnehgntplhyacfwgydqiae----------dl--------i~~ga~v~icn  130 (448)
T KOG0195|consen   86 LLSRK-----------------ADVNAVNEHGNTPLHYACFWGYDQIAE----------DL--------ISCGAAVNICN  130 (448)
T ss_pred             HHHHh-----------------cccchhhccCCCchhhhhhhcHHHHHH----------HH--------Hhccceeeecc
Confidence            66653                 568999999999999999999755431          11        11234568999


Q ss_pred             CCCCCcccccccc
Q 039657          320 DNGKTPKEVFTET  332 (507)
Q Consensus       320 ~~G~Tpldl~~~~  332 (507)
                      ++|.||+|.++..
T Consensus       131 k~g~tpldkakp~  143 (448)
T KOG0195|consen  131 KKGMTPLDKAKPM  143 (448)
T ss_pred             cCCCCchhhhchH
Confidence            9999999987643

>PHA02917 ankyrin-like protein; Provisional

Probab=99.63  E-value=1.3e-15  Score=168.26  Aligned_cols=147  Identities=10%  Similarity=-0.015  Sum_probs=102.1

Q ss_pred             cCCCCCChHHHHHHHc---CCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC-c--------------ccCCC-CCC
Q 039657          163 SGTEKMDNKILLAAKI---GVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN-A--------------QQSGR-KET  223 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~-~--------------~~d~~-g~T  223 (507)
                      ..|++|+||||+||..   |+.++|+.||+.++++ +..|.+|+||||+|+..|+ +              ..+.+ ..+
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~  105 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNI  105 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcch
Confidence            3477899999998665   8899999999999998 7889999999999998876 0              01222 236


Q ss_pred             ccchhhhcCCHHHHHHHHhhCCc----------------------hHHHHHHHhcccccccccccccC---CC-------
Q 039657          224 PMLIAARMGVTEMVEQILDTFPA----------------------NQYLQALLNRKILGESIFRQVDS---QG-------  271 (507)
Q Consensus       224 pLH~Aa~~g~~~iv~~Ll~~~~~----------------------~~vv~~Ll~~~~~~~~~in~~D~---~G-------  271 (507)
                      ++|+|+.+|+.++|++|++++.+                      -.++++|++.|    +.+|.+|.   .|       
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~G----a~vn~~d~~~~~g~~~~~~~  181 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENG----CSVLYEDEDDEYGYAYDDYQ  181 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcC----CCcccccccccccccccccc
Confidence            67789999999988888877665                      01455566555    44444332   22       


Q ss_pred             ----CcHHHHHHhc-----------CCCcccccCchhhhhHHHHHHhhhhhccC-CccccccccCCCCCccccccccc
Q 039657          272 ----NSALHLAAKF-----------GDHRPWLLPGAALQMQWEIKWYQFVKKSM-PRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       272 ----nTpLHlAa~~-----------g~~~~v~~~gaal~~~~el~w~~~v~~~~-~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                          .||||+|+..           ++.+++                   +.++ .+.+++.+|.+|.||++++....
T Consensus       182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv-------------------~~Li~~Gadvn~~d~~G~TpLh~A~~~g  240 (661)
T PHA02917        182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVV-------------------KCLINHGIKPSSIDKNYCTALQYYIKSS  240 (661)
T ss_pred             ccccccHHHHHHhhcccccccccccCcHHHH-------------------HHHHHCCCCcccCCCCCCcHHHHHHHcC
Confidence                3666666541           222222                   2222 34578899999999999987654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.63  E-value=1.7e-16  Score=144.15  Aligned_cols=111  Identities=13%  Similarity=0.049  Sum_probs=84.4

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHh----hhCCcccccccCCCCcHHHHHHHcCC-----------------cccC-C
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFL----KSYPAVIQELNTSEKNLVLLTFEKKN-----------------AQQS-G  219 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll----~~~~~~~~~~d~~G~tpLh~A~~~~~-----------------~~~d-~  219 (507)
                      ++.|..|.||||+||..|+.+.+....    +..+..+..+|.+|+||||+|+..++                 +.+| .
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~   90 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV   90 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC
Confidence            556888999999999999843221111    11123346679999999999998764                 5666 5


Q ss_pred             CCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          220 RKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       220 ~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +|+||||+|+..|+.+++++|+++            .+    ..++.+|..|.||||+|+..|+.++++
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~------------~g----~d~n~~~~~g~tpL~~A~~~~~~~i~~  143 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQ------------PG----VNMEILNYAFKTPYYVACERHDAKMMN  143 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhC------------CC----CCCccccCCCCCHHHHHHHcCCHHHHH
Confidence            899999999999999966665542            12    467899999999999999999877653

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.63  E-value=3.8e-16  Score=138.49  Aligned_cols=129  Identities=17%  Similarity=0.072  Sum_probs=100.4

Q ss_pred             HHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCCHHH
Q 039657          171 KILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGVTEM  236 (507)
Q Consensus       171 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~~~i  236 (507)
                      -+.+|+..|..+.|+.||+..++.++.+|.+|.||||-|+..|+              +.+...||||||-||+..+.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            46788888888888888888888888888888888888888887              6788999999999999999995


Q ss_pred             HHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccc
Q 039657          237 VEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFT  316 (507)
Q Consensus       237 v~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~  316 (507)
                      +..||+             .|    +++|++.+.-.||||+||...+.....                .+....+....-
T Consensus       146 a~~LLq-------------hg----aDVnA~t~g~ltpLhlaa~~rn~r~t~----------------~~Ll~dryi~pg  192 (228)
T KOG0512|consen  146 AGRLLQ-------------HG----ADVNAQTKGLLTPLHLAAGNRNSRDTL----------------ELLLHDRYIHPG  192 (228)
T ss_pred             HHHHHh-------------cc----CcccccccccchhhHHhhcccchHHHH----------------HHHhhccccChh
Confidence            555554             44    568999999999999999987644210                001111222334


Q ss_pred             cccCCCCCcccccccc
Q 039657          317 RFNDNGKTPKEVFTET  332 (507)
Q Consensus       317 ~~N~~G~Tpldl~~~~  332 (507)
                      .+|+.+.||++|+...
T Consensus       193 ~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  193 LKNNLEETAFDIARRT  208 (228)
T ss_pred             hhcCccchHHHHHHHh
Confidence            7899999999999776

>PHA02795 ankyrin-like protein; Provisional

Probab=99.63  E-value=1.3e-15  Score=157.91  Aligned_cols=79  Identities=19%  Similarity=0.199  Sum_probs=56.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCch
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPAN  247 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~  247 (507)
                      |.||+|.|+..|+.|+++.|+++++++                    +.+|.+|+||||+|+.+|+.++|++|+++    
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GADI--------------------N~kD~~G~TpLh~Aa~~g~~eiVelLL~~----  243 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIEDI--------------------NQLDAGGRTLLYRAIYAGYIDLVSWLLEN----  243 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCCc--------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHC----
Confidence            445555555555555555555555554                    55666677777779999999965555554    


Q ss_pred             HHHHHHHhcccccccccccccCCCCcHHHHHHhcCC
Q 039657          248 QYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD  283 (507)
Q Consensus       248 ~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~  283 (507)
                               |    +.+|.+|..|+||||+|+..|+
T Consensus       244 ---------G----AdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        244 ---------G----ANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             ---------C----CCCCCcCCCCCCHHHHHHHcCC
Confidence                     4    5689999999999999999996

>PHA02795 ankyrin-like protein; Provisional

Probab=99.63  E-value=1e-15  Score=158.64  Aligned_cols=131  Identities=15%  Similarity=0.053  Sum_probs=104.6

Q ss_pred             CCCCChHHHHHHH--cCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------ccc-----CCCCC
Q 039657          165 TEKMDNKILLAAK--IGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------AQQ-----SGRKE  222 (507)
Q Consensus       165 d~~g~TpLh~Aa~--~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------~~~-----d~~g~  222 (507)
                      +..++|+||.|+.  .|+.++|+.|+++|+++ +.  .++.||||.|+..++               +..     +..|.
T Consensus       113 ~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        113 CNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQY  189 (437)
T ss_pred             cccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhcc
Confidence            5568999999999  99999999999999998 44  356899999998775               111     13478


Q ss_pred             CccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHH
Q 039657          223 TPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKW  302 (507)
Q Consensus       223 TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w  302 (507)
                      ||+|.|+.+++.+++++|++++                 +.+|.+|..|+||||+|+..|+.++++.             
T Consensus       190 t~l~~a~~~~~~eIve~LIs~G-----------------ADIN~kD~~G~TpLh~Aa~~g~~eiVel-------------  239 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYI-----------------EDINQLDAGGRTLLYRAIYAGYIDLVSW-------------  239 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCc-----------------CCcCcCCCCCCCHHHHHHHcCCHHHHHH-------------
Confidence            8999999999999666666553                 4579999999999999999999877632             


Q ss_pred             hhhhhccCCccccccccCCCCCccccccccc
Q 039657          303 YQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       303 ~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                        .+   ..+.+++.+|++|.||++++....
T Consensus       240 --LL---~~GAdIN~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        240 --LL---ENGANVNAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             --HH---HCCCCCCCcCCCCCCHHHHHHHcC
Confidence              01   134467899999999999987654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.60  E-value=3.1e-14  Score=160.93  Aligned_cols=114  Identities=17%  Similarity=0.018  Sum_probs=85.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCccccccc--------------CCCCcHHHHHHHcCC--------------cc
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELN--------------TSEKNLVLLTFEKKN--------------AQ  216 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d--------------~~G~tpLh~A~~~~~--------------~~  216 (507)
                      +..|.||||+||.+|+.++|+.|+++++++ +.++              ..|+||||+|+..++              +.
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~  203 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILT  203 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh
Confidence            346999999999999999999999999987 3332              369999999998876              67


Q ss_pred             cCCCCCCccchhhhcCC-----HHHHHHHHhhCCchHHHHHHHhccc---ccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          217 QSGRKETPMLIAARMGV-----TEMVEQILDTFPANQYLQALLNRKI---LGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       217 ~d~~g~TpLH~Aa~~g~-----~~iv~~Ll~~~~~~~vv~~Ll~~~~---~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +|..|+||||+|+..+.     .+.+..         +.++++..+.   ....+.+.+|.+|.||||+|+..|+.++++
T Consensus       204 ~d~~g~T~Lh~A~~~~~~~~~~~~l~~~---------~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~  274 (743)
T TIGR00870       204 ADSLGNTLLHLLVMENEFKAEYEELSCQ---------MYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFR  274 (743)
T ss_pred             HhhhhhHHHHHHHhhhhhhHHHHHHHHH---------HHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHH
Confidence            89999999999999872     222111         2223332221   111233678999999999999999988875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.60  E-value=1.9e-15  Score=170.63  Aligned_cols=160  Identities=16%  Similarity=0.083  Sum_probs=113.1

Q ss_pred             cccCCCCCChHHH-HHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC-------------c-----------
Q 039657          161 AQSGTEKMDNKIL-LAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN-------------A-----------  215 (507)
Q Consensus       161 ~~~~d~~g~TpLh-~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~-------------~-----------  215 (507)
                      +|..|..|+|||| .|+.+++.++++.|++.+.     .|..|.||||.|+..+.             .           
T Consensus        45 in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~  119 (743)
T TIGR00870        45 INCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELAND  119 (743)
T ss_pred             CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcc
Confidence            3556788999999 8999999999999998876     67899999999997432             1           


Q ss_pred             ---ccCCCCCCccchhhhcCCHHHHHHHHhhCCc----------------------------------hHHHHHHHhccc
Q 039657          216 ---QQSGRKETPMLIAARMGVTEMVEQILDTFPA----------------------------------NQYLQALLNRKI  258 (507)
Q Consensus       216 ---~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~----------------------------------~~vv~~Ll~~~~  258 (507)
                         ..+..|.||||+||.+|+.++|+.|++++++                                  ..++++|++.+ 
T Consensus       120 ~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-  198 (743)
T TIGR00870       120 QYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP-  198 (743)
T ss_pred             ccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC-
Confidence               0124699999999999999999999998654                                  12478888877 


Q ss_pred             ccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccC-CccccccccCCCCCcccccccc
Q 039657          259 LGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSM-PRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       259 ~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~-~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                         +++|.+|..|+||||+|+..+..+..... -..++..-+.  ....... +....++.|++|.||++++...
T Consensus       199 ---adin~~d~~g~T~Lh~A~~~~~~~~~~~~-l~~~~~~~l~--~ll~~~~~~~el~~i~N~~g~TPL~~A~~~  267 (743)
T TIGR00870       199 ---ADILTADSLGNTLLHLLVMENEFKAEYEE-LSCQMYNFAL--SLLDKLRDSKELEVILNHQGLTPLKLAAKE  267 (743)
T ss_pred             ---cchhhHhhhhhHHHHHHHhhhhhhHHHHH-HHHHHHHHHH--HHHhccCChHhhhhhcCCCCCCchhhhhhc
Confidence               78999999999999999998743321000 0001111000  0001111 1112267899999999998654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.58  E-value=1.7e-15  Score=152.56  Aligned_cols=106  Identities=20%  Similarity=0.168  Sum_probs=95.1

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      .+....|||-.||.-|+.|+|+.|+++++|+ +..|..|.|.||+||..||              +.++..|+|+||.++
T Consensus       113 tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~ca  191 (615)
T KOG0508|consen  113 TTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCA  191 (615)
T ss_pred             ccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhh
Confidence            3556789999999999999999999999998 9999999999999999998              889999999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +.|+.|||++|++++..                  -.+|..|.|||-.|+..|+.++|.
T Consensus       192 EsG~vdivq~Ll~~ga~------------------i~~d~~GmtPL~~Aa~tG~~~iVe  232 (615)
T KOG0508|consen  192 ESGSVDIVQLLLKHGAK------------------IDVDGHGMTPLLLAAVTGHTDIVE  232 (615)
T ss_pred             hcccHHHHHHHHhCCce------------------eeecCCCCchHHHHhhhcchHHHH
Confidence            99999977777766543                  457888999999999999988764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.58  E-value=8.3e-15  Score=134.88  Aligned_cols=81  Identities=14%  Similarity=0.084  Sum_probs=67.9

Q ss_pred             CCCCCChHHHHHHHcCCHHH---HHHHhhhCCccccccc-CCCCcHHHHHHHcCC---------------cccCCCCCCc
Q 039657          164 GTEKMDNKILLAAKIGVTEM---VDRFLKSYPAVIQELN-TSEKNLVLLTFEKKN---------------AQQSGRKETP  224 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~---v~~Ll~~~~~~~~~~d-~~G~tpLh~A~~~~~---------------~~~d~~g~Tp  224 (507)
                      .|..|+||||+||..|+.+.   ++.|++.++++ +.+| ..|+||||+|+..++               +.+|.+|+||
T Consensus        53 ~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tp  131 (166)
T PHA02743         53 YDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETA  131 (166)
T ss_pred             cCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCH
Confidence            36679999999999988654   78999999987 7777 589999999998775               5678899999


Q ss_pred             cchhhhcCCHHHHHHHHhhCC
Q 039657          225 MLIAARMGVTEMVEQILDTFP  245 (507)
Q Consensus       225 LH~Aa~~g~~~iv~~Ll~~~~  245 (507)
                      ||+|+..|+.+++++|+++++
T Consensus       132 L~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743        132 YHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             HHHHHHcCCHHHHHHHHHcCC
Confidence            999999999996666666544

>PHA02741 hypothetical protein; Provisional

Probab=99.57  E-value=9.9e-15  Score=134.73  Aligned_cols=81  Identities=11%  Similarity=0.165  Sum_probs=71.1

Q ss_pred             ccCCCCCChHHHHHHHcCC----HHHHHHHhhhCCcccccccC-CCCcHHHHHHHcCC---------------cccCCCC
Q 039657          162 QSGTEKMDNKILLAAKIGV----TEMVDRFLKSYPAVIQELNT-SEKNLVLLTFEKKN---------------AQQSGRK  221 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~----~~~v~~Ll~~~~~~~~~~d~-~G~tpLh~A~~~~~---------------~~~d~~g  221 (507)
                      +.+|..|+||||+|+..|+    .++++.|++.++++ +.+|. +|+||||+|+..++               +.+|.+|
T Consensus        54 n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g  132 (169)
T PHA02741         54 NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADN  132 (169)
T ss_pred             hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC
Confidence            4457789999999999999    58999999999997 77775 99999999998877               5678999


Q ss_pred             CCccchhhhcCCHHHHHHHHhh
Q 039657          222 ETPMLIAARMGVTEMVEQILDT  243 (507)
Q Consensus       222 ~TpLH~Aa~~g~~~iv~~Ll~~  243 (507)
                      +||||+|+..|+.++++.|++.
T Consensus       133 ~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741        133 KSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999999987777765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.56  E-value=1.1e-14  Score=145.42  Aligned_cols=106  Identities=16%  Similarity=0.166  Sum_probs=87.1

Q ss_pred             cCCCCCChH-HHHHHHcCCHHHHHHHhhhCCcccccc----cCCCCcHHHHHHHcCC--------------ccc-CCCCC
Q 039657          163 SGTEKMDNK-ILLAAKIGVTEMVDRFLKSYPAVIQEL----NTSEKNLVLLTFEKKN--------------AQQ-SGRKE  222 (507)
Q Consensus       163 ~~d~~g~Tp-Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~----d~~G~tpLh~A~~~~~--------------~~~-d~~g~  222 (507)
                      ++|+.|.|+ ||.|++.|+.++++.|+++|+++ +.+    |..|.||||+|+..++              +.+ +..|.
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            446677765 66777779999999999999997 665    4689999999998887              554 45799


Q ss_pred             CccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcc
Q 039657          223 TPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRP  286 (507)
Q Consensus       223 TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~  286 (507)
                      ||||+|+.+|+.+++++|++.             |    +.++.+|..|.||||+|++.++..+
T Consensus       106 TpLh~Aa~~~~~eivklLL~~-------------G----Adin~kd~~G~TpL~~A~~~~~~~~  152 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSY-------------G----ADINIQTNDMVTPIELALMICNNFL  152 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHC-------------C----CCCCCCCCCCCCHHHHHHHhCChhH
Confidence            999999999999966665555             4    5679999999999999999887654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.56  E-value=2.5e-15  Score=136.46  Aligned_cols=81  Identities=7%  Similarity=0.028  Sum_probs=69.8

Q ss_pred             CCCCChHHHHHHHcCCH---HHHHHHhhhCCccccccc-CCCCcHHHHHHHcCC---------------cccCCCCCCcc
Q 039657          165 TEKMDNKILLAAKIGVT---EMVDRFLKSYPAVIQELN-TSEKNLVLLTFEKKN---------------AQQSGRKETPM  225 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~---~~v~~Ll~~~~~~~~~~d-~~G~tpLh~A~~~~~---------------~~~d~~g~TpL  225 (507)
                      |..|+||||+||..|+.   ++++.|++.++++ +.+| .+|+||||+|+..++               +.+|..|+|||
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL  130 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPY  130 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHH
Confidence            56799999999999987   4688999999987 6777 599999999998775               56889999999


Q ss_pred             chhhhcCCHHHHHHHHhhCCc
Q 039657          226 LIAARMGVTEMVEQILDTFPA  246 (507)
Q Consensus       226 H~Aa~~g~~~iv~~Ll~~~~~  246 (507)
                      |+|+..|+.+++++|++.+++
T Consensus       131 ~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        131 YVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             HHHHHcCCHHHHHHHHHcCCC
Confidence            999999999988888776554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.55  E-value=2.6e-15  Score=154.03  Aligned_cols=134  Identities=19%  Similarity=0.124  Sum_probs=109.7

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------------------
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------------------  214 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------------------  214 (507)
                      +..+.+|.|+||.||.-.+.+||++|++.++++ +..|..||||||.|+..|+                           
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl  145 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDL  145 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcccc
Confidence            556778999999999999999999999999997 8999999999998876665                           


Q ss_pred             ----------------------------------------------cccCCCCCCccchhhhcCCHHHHHHHHhhCCchH
Q 039657          215 ----------------------------------------------AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQ  248 (507)
Q Consensus       215 ----------------------------------------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~  248 (507)
                                                                    +.++..|.|.||.|+.+|..++.+.|+       
T Consensus       146 ~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl-------  218 (527)
T KOG0505|consen  146 AEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLL-------  218 (527)
T ss_pred             ccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHH-------
Confidence                                                          566777999999999999999555544       


Q ss_pred             HHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccc
Q 039657          249 YLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEV  328 (507)
Q Consensus       249 vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl  328 (507)
                            +.+    ..++.+|.+|+||||.||..|+.+...+                  ..........+++.|+||+|+
T Consensus       219 ------~ag----~~~~~~D~dgWtPlHAAA~Wg~~~~~el------------------L~~~ga~~d~~t~~g~~p~dv  270 (527)
T KOG0505|consen  219 ------QAG----YSVNIKDYDGWTPLHAAAHWGQEDACEL------------------LVEHGADMDAKTKMGETPLDV  270 (527)
T ss_pred             ------Hhc----cCcccccccCCCcccHHHHhhhHhHHHH------------------HHHhhcccchhhhcCCCCccc
Confidence                  444    4679999999999999999998776532                  111334567899999999999


Q ss_pred             ccc
Q 039657          329 FTE  331 (507)
Q Consensus       329 ~~~  331 (507)
                      +.+
T Consensus       271 ~de  273 (527)
T KOG0505|consen  271 ADE  273 (527)
T ss_pred             hhh
Confidence            876

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.55  E-value=1.5e-15  Score=160.66  Aligned_cols=174  Identities=20%  Similarity=0.067  Sum_probs=131.8

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCcc
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPM  225 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpL  225 (507)
                      +.|.+|-+|.|+||.||.+|+.+++++|++..+-+ ...|.+|.+|||+|++.|+              |.++..|.|||
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tpl  119 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPL  119 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCcc
Confidence            34667889999999999999999999999998876 8889999999999999998              78889999999


Q ss_pred             chhhhcCCHHHHHHHHhhCCc--------------------hHHHHHHHhccccc----ccccccccCCCCcHHHHHHhc
Q 039657          226 LIAARMGVTEMVEQILDTFPA--------------------NQYLQALLNRKILG----ESIFRQVDSQGNSALHLAAKF  281 (507)
Q Consensus       226 H~Aa~~g~~~iv~~Ll~~~~~--------------------~~vv~~Ll~~~~~~----~~~in~~D~~GnTpLHlAa~~  281 (507)
                      |.||++||.++|.+|+.++.+                    ..|+..|++..-..    ..--..++-.+-+|||+|+++
T Consensus       120 hlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakn  199 (854)
T KOG0507|consen  120 HLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKN  199 (854)
T ss_pred             chhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhc
Confidence            999999999999999999988                    12566666652100    011345777899999999999


Q ss_pred             CCCccccc-------------CchhhhhHHHHHHhhhhhcc-CCccccccccCCCCCcccccccccc
Q 039657          282 GDHRPWLL-------------PGAALQMQWEIKWYQFVKKS-MPRHFFTRFNDNGKTPKEVFTETHK  334 (507)
Q Consensus       282 g~~~~v~~-------------~gaal~~~~el~w~~~v~~~-~~~~~~~~~N~~G~Tpldl~~~~~~  334 (507)
                      ||.++++.             .|.+++-.....-.+.|..+ ....+..++|.+|+|++|+......
T Consensus       200 gh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  200 GHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             chHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcch
Confidence            99887642             33444332222111222111 1234667899999999999876544

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.55  E-value=9.6e-15  Score=143.09  Aligned_cols=86  Identities=22%  Similarity=0.278  Sum_probs=72.1

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCC
Q 039657          166 EKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFP  245 (507)
Q Consensus       166 ~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~  245 (507)
                      +.|+|+|++|+.+|++++|+.||..++|+ +.+|.+|.|+|++                   ||++||.|||+.||....
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMC-------------------A~EHGhkEivklLLA~p~  397 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMC-------------------AAEHGHKEIVKLLLAVPS  397 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhh-------------------hhhhChHHHHHHHhccCc
Confidence            46999999999999999999999999998 5555555555555                   999999997777665422


Q ss_pred             chHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          246 ANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       246 ~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                                      +++...|.+|.|+|.+|-..||.+|-
T Consensus       398 ----------------cd~sLtD~DgSTAl~IAleagh~eIa  423 (452)
T KOG0514|consen  398 ----------------CDISLTDVDGSTALSIALEAGHREIA  423 (452)
T ss_pred             ----------------ccceeecCCCchhhhhHHhcCchHHH
Confidence                            56788999999999999999998874

>PHA02792 ankyrin-like protein; Provisional

Probab=99.53  E-value=1e-13  Score=148.93  Aligned_cols=95  Identities=13%  Similarity=0.091  Sum_probs=80.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCC--CcHHHHHHHcCC-----------------cccCCCCCCccchh
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSE--KNLVLLTFEKKN-----------------AQQSGRKETPMLIA  228 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G--~tpLh~A~~~~~-----------------~~~d~~g~TpLH~A  228 (507)
                      ...++|.||..|+.++|+.|+++|+++ +.+|.+|  .||||+|+....                 +.+|..|+||||+|
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~A  417 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYC  417 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHH
Confidence            456799999999999999999999998 7788775  699998765432                 78899999999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHh
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAK  280 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~  280 (507)
                      +..++.+++++|+++             |    +.+|.+|..|+||||+|+.
T Consensus       418 a~~~n~eivelLLs~-------------G----ADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        418 IESHSVSLVEWLIDN-------------G----ADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHcCCHHHHHHHHHC-------------C----CCCCCcCCCCCCHHHHHHH
Confidence            999999955555554             4    5689999999999999986

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.52  E-value=7.1e-14  Score=159.29  Aligned_cols=119  Identities=13%  Similarity=0.107  Sum_probs=101.2

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC------------cccCCCCCCccch
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN------------AQQSGRKETPMLI  227 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~------------~~~d~~g~TpLH~  227 (507)
                      +.|..|..|.||||+||.+|+.++++.|+++++++ +.+|.+|+||||+|+..|+            ......|.+|||+
T Consensus       550 d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~  628 (823)
T PLN03192        550 DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCT  628 (823)
T ss_pred             CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHH
Confidence            45677889999999999999999999999999997 8899999999999999887            2234567788888


Q ss_pred             hhhcCCHHHHHHHHhhCCc--------------------hHHHHHHHhcccccccccccccCCC-CcHHHHHHhcCC
Q 039657          228 AARMGVTEMVEQILDTFPA--------------------NQYLQALLNRKILGESIFRQVDSQG-NSALHLAAKFGD  283 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~--------------------~~vv~~Ll~~~~~~~~~in~~D~~G-nTpLHlAa~~g~  283 (507)
                      ||.+|+.++++.|++++++                    ..++++|++.|    ++++.+|.+| .||++++.....
T Consensus       629 Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G----Adv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        629 AAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNG----ADVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcC----CCCCCCCCCCCCCHHHHHHHHHH
Confidence            8888888888888888776                    13588888888    7899999998 999999876543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.51  E-value=5.5e-14  Score=129.23  Aligned_cols=113  Identities=21%  Similarity=0.175  Sum_probs=100.6

Q ss_pred             ccccCCCcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCC
Q 039657          154 KKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSG  219 (507)
Q Consensus       154 ~~~~~~~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~  219 (507)
                      ...-+..+|..|+.|.|||.||+.+|++++|+.||+.+++. +...+...++|.+|+..|-              |.-|.
T Consensus       146 ~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDw  224 (296)
T KOG0502|consen  146 DLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDW  224 (296)
T ss_pred             HHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceecc
Confidence            33456678889999999999999999999999999999998 8888899999999999886              78899


Q ss_pred             CCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCC
Q 039657          220 RKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDH  284 (507)
Q Consensus       220 ~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~  284 (507)
                      +|-|||-+|++-||.++|+.||+.+                 ++++..|..|++++.+|+..|+.
T Consensus       225 NGgTpLlyAvrgnhvkcve~Ll~sG-----------------Ad~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  225 NGGTPLLYAVRGNHVKCVESLLNSG-----------------ADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             CCCceeeeeecCChHHHHHHHHhcC-----------------CCcccccccCCcHHHHHHHhhhH
Confidence            9999999999999999777777664                 45789999999999999999984

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.48  E-value=1.7e-13  Score=121.74  Aligned_cols=107  Identities=17%  Similarity=0.085  Sum_probs=87.8

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccc
Q 039657          161 AQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPML  226 (507)
Q Consensus       161 ~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH  226 (507)
                      +|.+|++|.||||.|+.+||++||+.|+..+++. +.+...||||||-||.=.+              +++.+..+||||
T Consensus        90 vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLh  168 (228)
T KOG0512|consen   90 VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLH  168 (228)
T ss_pred             ccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhH
Confidence            3677999999999999999999999999999998 8899999999999996554              788889999999


Q ss_pred             hhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCC
Q 039657          227 IAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD  283 (507)
Q Consensus       227 ~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~  283 (507)
                      +||.+.+...            .+.+|+....   .....++..+.||+.+|-+-+-
T Consensus       169 laa~~rn~r~------------t~~~Ll~dry---i~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  169 LAAGNRNSRD------------TLELLLHDRY---IHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             HhhcccchHH------------HHHHHhhccc---cChhhhcCccchHHHHHHHhhh
Confidence            9999988764            3444444331   2234567889999999987754

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.47  E-value=9.8e-14  Score=132.14  Aligned_cols=75  Identities=23%  Similarity=0.351  Sum_probs=60.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCc
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPA  246 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~  246 (507)
                      ..+||||+||.+||-++|+.|++..+|+ +..|                   ..|.|||||||..|...|.+-|++.   
T Consensus        66 gddtplhlaaahghrdivqkll~~kadv-navn-------------------ehgntplhyacfwgydqiaedli~~---  122 (448)
T KOG0195|consen   66 GDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVN-------------------EHGNTPLHYACFWGYDQIAEDLISC---  122 (448)
T ss_pred             CCCcchhhhhhcccHHHHHHHHHHhccc-chhh-------------------ccCCCchhhhhhhcHHHHHHHHHhc---
Confidence            3579999999999999999999999998 4444                   4556666669999999966666655   


Q ss_pred             hHHHHHHHhcccccccccccccCCCCcHHHHH
Q 039657          247 NQYLQALLNRKILGESIFRQVDSQGNSALHLA  278 (507)
Q Consensus       247 ~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlA  278 (507)
                                |    +.++..+++|.|||.-|
T Consensus       123 ----------g----a~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  123 ----------G----AAVNICNKKGMTPLDKA  140 (448)
T ss_pred             ----------c----ceeeecccCCCCchhhh
Confidence                      3    56788899999998765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.44  E-value=4.8e-13  Score=133.57  Aligned_cols=91  Identities=9%  Similarity=0.082  Sum_probs=76.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccc-cCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQEL-NTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~-d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      +..|.||||+|+..|+.++++.|++.++++ +.. +..|.||||+|+..++              +.+|.+|+||||+|+
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~  145 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL  145 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            446999999999999999999999999998 654 5689999999998887              778999999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHH
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLA  278 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlA  278 (507)
                      +.++.+++..+.               +       +..|..|.+|++.+
T Consensus       146 ~~~~~~~~~~~~---------------~-------~~~~~~~~~~~~~~  172 (300)
T PHA02884        146 MICNNFLAFMIC---------------D-------NEISNFYKHPKKIL  172 (300)
T ss_pred             HhCChhHHHHhc---------------C-------CcccccccChhhhh
Confidence            999998543322               1       23577888999975

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.43  E-value=2.6e-14  Score=131.37  Aligned_cols=146  Identities=17%  Similarity=0.093  Sum_probs=121.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC------------cccCCCCCCccchhhhcC
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN------------AQQSGRKETPMLIAARMG  232 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~------------~~~d~~g~TpLH~Aa~~g  232 (507)
                      |.+|+.++|.|+-.|+...+..+|..+... ++.+--+++|+.++....+            |..|+.|.|||.||+..|
T Consensus        93 ~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G  171 (296)
T KOG0502|consen   93 DPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKG  171 (296)
T ss_pred             CchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcC
Confidence            556999999999999999999999888876 8888899999988876554            788999999999999999


Q ss_pred             CHHHHHHHHhhCCc--------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCch
Q 039657          233 VTEMVEQILDTFPA--------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGA  292 (507)
Q Consensus       233 ~~~iv~~Ll~~~~~--------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~ga  292 (507)
                      |.++|++||+.++|                    ..+|++|+.++    .++|..|-+|-|||-+|++.+|.+++..   
T Consensus       172 ~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~----vdVNvyDwNGgTpLlyAvrgnhvkcve~---  244 (296)
T KOG0502|consen  172 HIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTRE----VDVNVYDWNGGTPLLYAVRGNHVKCVES---  244 (296)
T ss_pred             chHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcC----CCcceeccCCCceeeeeecCChHHHHHH---
Confidence            99999999999887                    24689999887    7899999999999999999999887631   


Q ss_pred             hhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          293 ALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       293 al~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                                     .+-.+.+++..+..|.+++|++-...
T Consensus       245 ---------------Ll~sGAd~t~e~dsGy~~mdlAValG  270 (296)
T KOG0502|consen  245 ---------------LLNSGADVTQEDDSGYWIMDLAVALG  270 (296)
T ss_pred             ---------------HHhcCCCcccccccCCcHHHHHHHhh
Confidence                           01134567888889999999876543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.41  E-value=7.8e-13  Score=135.96  Aligned_cols=174  Identities=18%  Similarity=0.247  Sum_probs=113.7

Q ss_pred             CcccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCch---hhHHHHHHHHHHHHHHHhcC
Q 039657            1 LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNY---ATCVLLFKVMMKAMLIVLGL   77 (507)
Q Consensus         1 lv~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~   77 (507)
                      .||+.|.+||||||.+|       ++.++.+...+|.+..++..++..-+  .|.+.   ..+.....    ......++
T Consensus        98 ~Vn~~d~e~wtPlhaaa-------scg~~~i~~~li~~gA~~~avNsdg~--~P~dl~e~ea~~~~l~----~~~~r~gi  164 (527)
T KOG0505|consen   98 NVNAQDNEGWTPLHAAA-------SCGYLNIVEYLIQHGANLLAVNSDGN--MPYDLAEDEATLDVLE----TEMARQGI  164 (527)
T ss_pred             CccccccccCCcchhhc-------ccccHHHHHHHHHhhhhhhhccCCCC--CccccccCcchhHHHH----HHHHHhcc
Confidence            38999999999999999       79999999999998888776654332  22111   11111111    11122222


Q ss_pred             CchhhhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCcccccccccccccccc
Q 039657           78 GIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIE  157 (507)
Q Consensus        78 g~~~i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~  157 (507)
                      -   |...++.-++-.  ++=+++.+..+...                                                
T Consensus       165 ~---iea~R~~~e~~m--l~D~~q~l~~G~~~------------------------------------------------  191 (527)
T KOG0505|consen  165 D---IEAARKAEEQTM--LDDARQWLNAGAEL------------------------------------------------  191 (527)
T ss_pred             c---HHHHhhhhHHHH--HHHHHHHHhccccc------------------------------------------------
Confidence            1   433333333321  11122222221100                                                


Q ss_pred             CCCcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHH
Q 039657          158 NGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMV  237 (507)
Q Consensus       158 ~~~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv  237 (507)
                          +..+..|.|.||.|+.+|..++.++|++.+.++                    +.+|.+||||||.||.+|+.+++
T Consensus       192 ----d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~--------------------~~~D~dgWtPlHAAA~Wg~~~~~  247 (527)
T KOG0505|consen  192 ----DARHARGATALHVAAANGYTEVAALLLQAGYSV--------------------NIKDYDGWTPLHAAAHWGQEDAC  247 (527)
T ss_pred             ----cccccccchHHHHHHhhhHHHHHHHHHHhccCc--------------------ccccccCCCcccHHHHhhhHhHH
Confidence                112334999999999999999999999999887                    56677778888889999999955


Q ss_pred             HHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhc
Q 039657          238 EQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKF  281 (507)
Q Consensus       238 ~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~  281 (507)
                      ++|+++             +    +.+++....|.||+-+|...
T Consensus       248 elL~~~-------------g----a~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  248 ELLVEH-------------G----ADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHHHHh-------------h----cccchhhhcCCCCccchhhh
Confidence            554444             4    56788889999999988763

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.39  E-value=1.6e-12  Score=111.38  Aligned_cols=104  Identities=26%  Similarity=0.312  Sum_probs=90.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      |..|.||||+|+..|+.++++.|++.+++. ...|..|.||+|+|+..+.              +..+..|.||+|+|+.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            567999999999999999999999999887 7889999999999998876              5677889999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcc
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRP  286 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~  286 (507)
                      .++.+++++|++.+                 ..++..|..|.||||+|...++.++
T Consensus        83 ~~~~~~~~~L~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~~~  121 (126)
T cd00204          83 NGNLDVVKLLLKHG-----------------ADVNARDKDGRTPLHLAAKNGHLEV  121 (126)
T ss_pred             cCcHHHHHHHHHcC-----------------CCCcccCCCCCCHHHHHHhcCCHHH
Confidence            99999666665543                 3467889999999999999876554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.39  E-value=1.4e-12  Score=138.42  Aligned_cols=114  Identities=19%  Similarity=0.167  Sum_probs=96.3

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC----------------------cccCCC
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN----------------------AQQSGR  220 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~----------------------~~~d~~  220 (507)
                      .+...|.||||.||.+||.+++.+|++++++. ..+|.++.|+|-+|++.|.                      ..++-.
T Consensus       110 a~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~  188 (854)
T KOG0507|consen  110 AVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFP  188 (854)
T ss_pred             cccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCC
Confidence            33456999999999999999999999999998 7899999999999999986                      456778


Q ss_pred             CCCccchhhhcCCHHHHHHHHhhCCc-------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhc
Q 039657          221 KETPMLIAARMGVTEMVEQILDTFPA-------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKF  281 (507)
Q Consensus       221 g~TpLH~Aa~~g~~~iv~~Ll~~~~~-------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~  281 (507)
                      +-+|||+|+++||.++++.|++.+-+                   ..+|.+|++.|    .....+|.+|.|+|.+-...
T Consensus       189 ~~~plHlaakngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~~g----in~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  189 AIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLEIG----INTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             CcCCcchhhhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHhhc----cccccccccchHHHHHHHhc
Confidence            99999999999999999999998776                   12577777776    45677888888888765443

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.25  E-value=1.1e-11  Score=101.36  Aligned_cols=76  Identities=26%  Similarity=0.309  Sum_probs=61.6

Q ss_pred             HHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHH
Q 039657          172 ILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQ  251 (507)
Q Consensus       172 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~  251 (507)
                      ||+||+.|+.++++.|++.++++ +.    |+|                   |||+|+.+|+.+++++|++.++      
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~-------------------~l~~A~~~~~~~~~~~Ll~~g~------   50 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNT-------------------ALHYAAENGNLEIVKLLLENGA------   50 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSB-------------------HHHHHHHTTTHHHHHHHHHTTT------
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCC-------------------HHHHHHHcCCHHHHHHHHHhcc------
Confidence            79999999999999999988776 11    444                   4555999999997766666544      


Q ss_pred             HHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          252 ALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       252 ~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                                 .++.+|.+|+||||+|+..|+.++++
T Consensus        51 -----------~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen   51 -----------DINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             -----------CTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             -----------cccccCCCCCCHHHHHHHcCCHHHHH
Confidence                       57899999999999999999988753

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.21  E-value=2.4e-11  Score=89.97  Aligned_cols=54  Identities=20%  Similarity=0.272  Sum_probs=41.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHH
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQIL  241 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll  241 (507)
                      |.||||+||+.|+.++++.|++.+.++ +.+|.+|+||||+                   |+.+|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~-------------------A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHY-------------------AAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHH-------------------HHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHH-------------------HHHccCHHHHHHHC
Confidence            789999999999999999999999997 5556555555555                   99999999888875

...

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.19  E-value=2.4e-11  Score=132.55  Aligned_cols=232  Identities=14%  Similarity=0.159  Sum_probs=146.1

Q ss_pred             ccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCC--CCCCCCCCchhhHHHHHHHHHHHHHHHhcCCch
Q 039657            3 NSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDD--GEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIW   80 (507)
Q Consensus         3 ~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (507)
                      -.+|+.|++||-++|       .+++...++.++.+.+.|+....  ++....-.-.+...+.+.+++.+..........
T Consensus       784 ehrdkkgf~plImaa-------tagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvs  856 (2131)
T KOG4369|consen  784 EHRDKKGFVPLIMAA-------TAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVS  856 (2131)
T ss_pred             cccccccchhhhhhc-------ccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchh
Confidence            357999999999999       68899999999999998875432  221110000111122222222221111111000


Q ss_pred             hh-hHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCC
Q 039657           81 RI-NHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENG  159 (507)
Q Consensus        81 ~i-~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~  159 (507)
                      +. +.=.   ..--...+|++.|+..|+.++....                                             
T Consensus       857 DytPlsl---a~Sggy~~iI~~llS~GseInSrtg---------------------------------------------  888 (2131)
T KOG4369|consen  857 DYTPLSL---ARSGGYTKIIHALLSSGSEINSRTG---------------------------------------------  888 (2131)
T ss_pred             hcCchhh---hcCcchHHHHHHHhhcccccccccc---------------------------------------------
Confidence            00 0000   0001234555556555543321111                                             


Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCcc
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPM  225 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpL  225 (507)
                           .+.|-.||.+|+.+||.+.++.|++.+.++......+-+|+|-+|+-.|.              ..+-+.|.|||
T Consensus       889 -----SklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltpl  963 (2131)
T KOG4369|consen  889 -----SKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPL  963 (2131)
T ss_pred             -----cccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCccc
Confidence                 24588899999999999999999988888855566777888887776665              45778889999


Q ss_pred             chhhhcCCHHHHHHHHhhCCc----------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCC
Q 039657          226 LIAARMGVTEMVEQILDTFPA----------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD  283 (507)
Q Consensus       226 H~Aa~~g~~~iv~~Ll~~~~~----------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~  283 (507)
                      .-+|..|.+|+-+.||..++|                      .-.+..|++..    +-++.++++|+|+|.+|+.-|+
T Consensus       964 me~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~----atv~v~NkkG~T~Lwla~~Gg~ 1039 (2131)
T KOG4369|consen  964 MEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGD----ATVRVPNKKGCTVLWLASAGGA 1039 (2131)
T ss_pred             chhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCc----cceecccCCCCcccchhccCCc
Confidence            999999999999999998887                      11366666655    6778899999999999998888


Q ss_pred             Cccccc---CchhhhhHH
Q 039657          284 HRPWLL---PGAALQMQW  298 (507)
Q Consensus       284 ~~~v~~---~gaal~~~~  298 (507)
                      ...+.+   .+++..+++
T Consensus      1040 lss~~il~~~~ad~d~qd 1057 (2131)
T KOG4369|consen 1040 LSSCPILVSSVADADQQD 1057 (2131)
T ss_pred             cccchHHhhcccChhhhh
Confidence            655432   344444443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.17  E-value=6.2e-11  Score=127.56  Aligned_cols=142  Identities=17%  Similarity=0.173  Sum_probs=101.8

Q ss_pred             CCCcccCCCCCChHHHHHHH---cCCHHHHHHHhhhCCcccccc----cCCCCcHHHHHHHcCC----------------
Q 039657          158 NGSAQSGTEKMDNKILLAAK---IGVTEMVDRFLKSYPAVIQEL----NTSEKNLVLLTFEKKN----------------  214 (507)
Q Consensus       158 ~~~~~~~d~~g~TpLh~Aa~---~G~~~~v~~Ll~~~~~~~~~~----d~~G~tpLh~A~~~~~----------------  214 (507)
                      +.+.+++...|.|.||.|.-   .++-++++.|++..|.++++.    .-.|+||||+|..+.+                
T Consensus       133 ~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~a  212 (782)
T KOG3676|consen  133 DWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHA  212 (782)
T ss_pred             hhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhh
Confidence            34556666789999999997   555699999999999876665    3469999999987654                


Q ss_pred             -------ccc--------------CCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCc
Q 039657          215 -------AQQ--------------SGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNS  273 (507)
Q Consensus       215 -------~~~--------------d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnT  273 (507)
                             ...              -.-|+.||.+||--++.|||++|+++             +    +++|+||.+|||
T Consensus       213 Ra~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~-------------g----Ad~~aqDS~GNT  275 (782)
T KOG3676|consen  213 RACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH-------------G----ADPNAQDSNGNT  275 (782)
T ss_pred             HhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc-------------C----CCCCccccCCCh
Confidence                   111              12488999999999999966555554             3    668999999999


Q ss_pred             HHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccccc
Q 039657          274 ALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       274 pLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      .||..+..-..          +|-      ......-......++|++|.||+-++...
T Consensus       276 VLH~lVi~~~~----------~My------~~~L~~ga~~l~~v~N~qgLTPLtLAakl  318 (782)
T KOG3676|consen  276 VLHMLVIHFVT----------EMY------DLALELGANALEHVRNNQGLTPLTLAAKL  318 (782)
T ss_pred             HHHHHHHHHHH----------HHH------HHHHhcCCCccccccccCCCChHHHHHHh
Confidence            99998876211          121      11111111123568999999999998654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.15  E-value=2.5e-10  Score=97.69  Aligned_cols=76  Identities=25%  Similarity=0.299  Sum_probs=54.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      +..|.||||.|+..++.++++.|++.++++ +..|..|.||+|+|+..++              +..|..|.||+|+|..
T Consensus        37 ~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~  115 (126)
T cd00204          37 DNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAK  115 (126)
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence            445667777777777777777777766654 5566667777777766654              4567778888888999


Q ss_pred             cCCHHHHHHHH
Q 039657          231 MGVTEMVEQIL  241 (507)
Q Consensus       231 ~g~~~iv~~Ll  241 (507)
                      .++.+++++|+
T Consensus       116 ~~~~~~~~~Ll  126 (126)
T cd00204         116 NGHLEVVKLLL  126 (126)
T ss_pred             cCCHHHHHHhC
Confidence            99999877764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.15  E-value=3.5e-11  Score=89.86  Aligned_cols=49  Identities=12%  Similarity=0.150  Sum_probs=31.8

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHH
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLT  209 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A  209 (507)
                      +.+.+|..|.||||+||+.|+.++|+.|++.+.++ +.+|.+|+||||+|
T Consensus         8 ~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    8 DVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            45778999999999999999999999999989987 88999999999986

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.15  E-value=1.8e-10  Score=94.10  Aligned_cols=59  Identities=20%  Similarity=0.238  Sum_probs=47.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCc
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPA  246 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~  246 (507)
                      |+||||+||..|+.++++.|++.++++ +.+|.+|+||||+                   |+.+|+.+++++|++++++
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~-------------------A~~~~~~~~~~~Ll~~g~~   84 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHY-------------------AAENGNLEIVKLLLEHGAD   84 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHH-------------------HHHTTHHHHHHHHHHTTT-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHH-------------------HHHcCCHHHHHHHHHcCCC
Confidence            788999999999999999999999998 5555555555555                   9999999988887777554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.05  E-value=5e-10  Score=105.94  Aligned_cols=110  Identities=23%  Similarity=0.143  Sum_probs=92.6

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC----------------------ccc
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN----------------------AQQ  217 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~----------------------~~~  217 (507)
                      .....+..+.+++|.|+..+..++++.++..+.++ +.+|.+|.||||+|+..++                      +.+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            33455667899999999999999999999999998 9999999999999988774                      345


Q ss_pred             CCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          218 SGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       218 d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      |.+|.||||+|+..|+.++++.|++..+                 .++..|..|.|+||+|+..++.+++
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~-----------------~~~~~~~~g~t~l~~a~~~~~~~~~  196 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGA-----------------DPNSRNSYGVTALDPAAKNGRIELV  196 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCC-----------------CCcccccCCCcchhhhcccchHHHH
Confidence            8999999999999999996666666544                 4677799999999999999987764

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.04  E-value=3.6e-10  Score=125.76  Aligned_cols=83  Identities=19%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCchH
Q 039657          169 DNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQ  248 (507)
Q Consensus       169 ~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~  248 (507)
                      .++||.||..|+.+.++.|++.++++ +.+|.+                   |+||||+||.+|+.++|++|++.+    
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~-------------------G~TpLh~Aa~~g~~eiv~~LL~~G----  138 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGADP-NCRDYD-------------------GRTPLHIACANGHVQVVRVLLEFG----  138 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCC-------------------CCcHHHHHHHCCCHHHHHHHHHCC----
Confidence            35699999999999999999999987 444555                   555555599999999666666553    


Q ss_pred             HHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          249 YLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       249 vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                                   +++|.+|.+|+||||+|+..|+.++++
T Consensus       139 -------------advn~~d~~G~TpLh~A~~~g~~~iv~  165 (664)
T PTZ00322        139 -------------ADPTLLDKDGKTPLELAEENGFREVVQ  165 (664)
T ss_pred             -------------CCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence                         457999999999999999999988764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.02  E-value=2.1e-10  Score=85.62  Aligned_cols=47  Identities=32%  Similarity=0.411  Sum_probs=25.3

Q ss_pred             cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHH
Q 039657          215 AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLA  278 (507)
Q Consensus       215 ~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlA  278 (507)
                      +.+|..|.||||+||.+|+.++|++|++.             +    .+++.+|.+|+||||+|
T Consensus        10 n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~-------------g----~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   10 NAQDKYGNTPLHWAARYGHSEVVRLLLQN-------------G----ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T---TTS--HHHHHHHHT-HHHHHHHHHC-------------T------TT---TTS--HHHH-
T ss_pred             cCcCCCCCcHHHHHHHcCcHHHHHHHHHC-------------c----CCCCCCcCCCCCHHHhC
Confidence            44555566666669999999966666533             3    57899999999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.01  E-value=1.5e-10  Score=85.74  Aligned_cols=50  Identities=34%  Similarity=0.403  Sum_probs=36.6

Q ss_pred             CCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          221 KETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       221 g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      |+||||+||+.|+.+++++|++++                 .++|.+|.+|+||||+|++.|+.+++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-----------------~din~~d~~g~t~lh~A~~~g~~~~~   50 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-----------------ADINAQDEDGRTPLHYAAKNGNIDIV   50 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-----------------SGTT-B-TTS--HHHHHHHTT-HHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-----------------CCCCCCCCCCCCHHHHHHHccCHHHH
Confidence            678888899999999666666553                 45799999999999999999997765

...

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.00  E-value=3.5e-10  Score=123.72  Aligned_cols=166  Identities=17%  Similarity=0.144  Sum_probs=95.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccC---------
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQS---------  218 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d---------  218 (507)
                      +-+|+.|.+||.+|+-.||..+|+.|+++.+++-...|..+.|+|-+||..|.              ..++         
T Consensus       784 ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsl  863 (2131)
T KOG4369|consen  784 EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSL  863 (2131)
T ss_pred             cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhh
Confidence            33455566666666666666666666665555544445555566555555443              1223         


Q ss_pred             --------------------------CCCCCccchhhhcCCHHHHHHHHhhCCc---------------------hHHHH
Q 039657          219 --------------------------GRKETPMLIAARMGVTEMVEQILDTFPA---------------------NQYLQ  251 (507)
Q Consensus       219 --------------------------~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~---------------------~~vv~  251 (507)
                                                +-|-.||.+|+.+||.+.++.||+.+.|                     ..++.
T Consensus       864 a~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~  943 (2131)
T KOG4369|consen  864 ARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVF  943 (2131)
T ss_pred             hcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHH
Confidence                                      3445555555555555555555555444                     12467


Q ss_pred             HHHhcccccccccccccCCCCcHHHHHHhcCCCccccc---Cchh-------------hhhHHHHHHhhhhhccCCcc-c
Q 039657          252 ALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLL---PGAA-------------LQMQWEIKWYQFVKKSMPRH-F  314 (507)
Q Consensus       252 ~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~---~gaa-------------l~~~~el~w~~~v~~~~~~~-~  314 (507)
                      +|+...    +++..+-+.|-|||.-+|..|..++-++   .|+.             +.+..+-..-+.|.+++.+. .
T Consensus       944 lLLa~~----anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at 1019 (2131)
T KOG4369|consen  944 LLLAAQ----ANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT 1019 (2131)
T ss_pred             HHHHHh----hhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc
Confidence            777665    6677788889999999988888776443   2221             21111222233444444433 5


Q ss_pred             cccccCCCCCccccccc
Q 039657          315 FTRFNDNGKTPKEVFTE  331 (507)
Q Consensus       315 ~~~~N~~G~Tpldl~~~  331 (507)
                      +..+|++|.|+|-++..
T Consensus      1020 v~v~NkkG~T~Lwla~~ 1036 (2131)
T KOG4369|consen 1020 VRVPNKKGCTVLWLASA 1036 (2131)
T ss_pred             eecccCCCCcccchhcc
Confidence            67899999999877644

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.92  E-value=7.5e-09  Score=111.76  Aligned_cols=106  Identities=18%  Similarity=0.118  Sum_probs=87.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccc---------cC--------------CCCcHHHHHHHcCC---------
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQEL---------NT--------------SEKNLVLLTFEKKN---------  214 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~---------d~--------------~G~tpLh~A~~~~~---------  214 (507)
                      .|.||||.|..+.+.++|+.|++.++|+ +.+         |.              -|..||-+||-.++         
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            5999999999999999999999999987 322         22              26789999988776         


Q ss_pred             -----cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          215 -----AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       215 -----~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                           +.+|.+|+|.||.-+.+-..+             .++++++.+..  .+...++++|-|||-+||+.|..++++
T Consensus       262 ~gAd~~aqDS~GNTVLH~lVi~~~~~-------------My~~~L~~ga~--~l~~v~N~qgLTPLtLAaklGk~emf~  325 (782)
T KOG3676|consen  262 HGADPNAQDSNGNTVLHMLVIHFVTE-------------MYDLALELGAN--ALEHVRNNQGLTPLTLAAKLGKKEMFQ  325 (782)
T ss_pred             cCCCCCccccCCChHHHHHHHHHHHH-------------HHHHHHhcCCC--ccccccccCCCChHHHHHHhhhHHHHH
Confidence                 899999999999999987777             55666665532  457789999999999999999977653

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.85  E-value=6.9e-09  Score=98.07  Aligned_cols=84  Identities=19%  Similarity=0.162  Sum_probs=76.1

Q ss_pred             CcccCCCCCChHHHHHHHcCC-----HHHHHHHhhhCC--cccccccCCCCcHHHHHHHcCC--------------cccC
Q 039657          160 SAQSGTEKMDNKILLAAKIGV-----TEMVDRFLKSYP--AVIQELNTSEKNLVLLTFEKKN--------------AQQS  218 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~-----~~~v~~Ll~~~~--~~~~~~d~~G~tpLh~A~~~~~--------------~~~d  218 (507)
                      +.+.++..|.||||+|+..|+     .++++.|++.++  +....+|.+|+||||+|+..|+              +.++
T Consensus        98 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~  177 (235)
T COG0666          98 DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRN  177 (235)
T ss_pred             CcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccc
Confidence            446778999999999999999     999999999999  6768889999999999999987              5678


Q ss_pred             CCCCCccchhhhcCCHHHHHHHHhh
Q 039657          219 GRKETPMLIAARMGVTEMVEQILDT  243 (507)
Q Consensus       219 ~~g~TpLH~Aa~~g~~~iv~~Ll~~  243 (507)
                      ..|.||+|+|+..|+.++++.+++.
T Consensus       178 ~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         178 SYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             cCCCcchhhhcccchHHHHHHHHhc
Confidence            9999999999999999977777765

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.84  E-value=3.4e-09  Score=107.47  Aligned_cols=127  Identities=20%  Similarity=0.184  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCcccCCCCCChHHH
Q 039657           94 WAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSAQSGTEKMDNKIL  173 (507)
Q Consensus        94 ~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~d~~g~TpLh  173 (507)
                      ..+..++.|++.-..++||+--                      +|           ++.+....++...++.++..++.
T Consensus       465 rGv~Fc~~Lvs~fNFHNYD~L~----------------------h~-----------~~~K~DPRR~~~~~~~~~~i~~~  511 (622)
T KOG0506|consen  465 RGVAFCRQLVSKFNFHNYDSLR----------------------HP-----------DNRKIDPRREGGPRENDTVINVM  511 (622)
T ss_pred             ccHHHHHHHHHHhcccCchhhc----------------------cc-----------ccccCCcccccCcccccchhhhh
Confidence            3567899999999999998831                      11           01111112222234556788999


Q ss_pred             HHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHH
Q 039657          174 LAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQAL  253 (507)
Q Consensus       174 ~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~L  253 (507)
                      +||+.|++..++.+.-.+.|+                    +.+|.+.+|+||+||..|++++|++|++.+.        
T Consensus       512 ~aa~~GD~~alrRf~l~g~D~--------------------~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~k--------  563 (622)
T KOG0506|consen  512 YAAKNGDLSALRRFALQGMDL--------------------ETKDYDDRTALHVAAAEGHVEVVKFLLNACK--------  563 (622)
T ss_pred             hhhhcCCHHHHHHHHHhcccc--------------------cccccccchhheeecccCceeHHHHHHHHHc--------
Confidence            999999999999998888887                    5677788888888999999998888887755        


Q ss_pred             HhcccccccccccccCCCCcHHHHHHhcCCCccccc
Q 039657          254 LNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLL  289 (507)
Q Consensus       254 l~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~  289 (507)
                              ...+.+|.+|+|||.-|...+|.+++++
T Consensus       564 --------v~~~~kDRw~rtPlDdA~~F~h~~v~k~  591 (622)
T KOG0506|consen  564 --------VDPDPKDRWGRTPLDDAKHFKHKEVVKL  591 (622)
T ss_pred             --------CCCChhhccCCCcchHhHhcCcHHHHHH
Confidence                    3568999999999999999999888754

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.84  E-value=2.9e-09  Score=85.47  Aligned_cols=107  Identities=21%  Similarity=0.117  Sum_probs=78.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCchH
Q 039657          169 DNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQ  248 (507)
Q Consensus       169 ~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~  248 (507)
                      .--+.|++++|..+-|+..+..+-++. .+                    ..|+||||+||-.|+.+++++|+.      
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn-~~--------------------~ggR~plhyAAD~GQl~ilefli~------   55 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVN-EI--------------------YGGRTPLHYAADYGQLSILEFLIS------   55 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHH-HH--------------------hCCcccchHhhhcchHHHHHHHHH------
Confidence            345789999999999999998886652 11                    246777777999999995555554      


Q ss_pred             HHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccc
Q 039657          249 YLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEV  328 (507)
Q Consensus       249 vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl  328 (507)
                             .|    +.++.+|+.|-|||--|+..||.+.|++     .             +....+...+-.+|.+.+|-
T Consensus        56 -------iG----A~i~~kDKygITPLLsAvwEGH~~cVkl-----L-------------L~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   56 -------IG----ANIQDKDKYGITPLLSAVWEGHRDCVKL-----L-------------LQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             -------hc----cccCCccccCCcHHHHHHHHhhHHHHHH-----H-------------HHcCcccceeCCCchhHHhh
Confidence                   44    5689999999999999999999877642     0             11233456677778877765


Q ss_pred             ccc
Q 039657          329 FTE  331 (507)
Q Consensus       329 ~~~  331 (507)
                      ..+
T Consensus       107 te~  109 (117)
T KOG4214|consen  107 TEE  109 (117)
T ss_pred             ccH
Confidence            543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.81  E-value=8.8e-09  Score=114.71  Aligned_cols=89  Identities=13%  Similarity=0.084  Sum_probs=66.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHH
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQIL  241 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll  241 (507)
                      |.+|..|+||||+||..|+.++++.|++.++++ +.+|.+                   |+||||+|+.+|+.+++++|+
T Consensus       109 n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~-------------------G~TpLh~A~~~g~~~iv~~Ll  168 (664)
T PTZ00322        109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKD-------------------GKTPLELAEENGFREVVQLLS  168 (664)
T ss_pred             CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCC-------------------CCCHHHHHHHCCcHHHHHHHH
Confidence            344778999999999999999999999999997 445544                   555555599999999888888


Q ss_pred             hhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHh
Q 039657          242 DTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAK  280 (507)
Q Consensus       242 ~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~  280 (507)
                      +++..  .    .    ..++..+..+..|++|+-.+.-
T Consensus       169 ~~~~~--~----~----~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        169 RHSQC--H----F----ELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             hCCCc--c----c----ccCCCCCccccCCCCccchhhh
Confidence            77332  0    1    1125567777878877766543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=7e-09  Score=106.37  Aligned_cols=73  Identities=19%  Similarity=0.149  Sum_probs=46.4

Q ss_pred             HHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCCHHHHH
Q 039657          173 LLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGVTEMVE  238 (507)
Q Consensus       173 h~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~~~iv~  238 (507)
                      .-|+..|.+|+|+.++..-.|. ...|..|-|+||-|...||              |..|.+||||||+||..+++.+++
T Consensus       555 LDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            3445555555555555444443 4444555555555544444              677777888888899999999777


Q ss_pred             HHHhhCCc
Q 039657          239 QILDTFPA  246 (507)
Q Consensus       239 ~Ll~~~~~  246 (507)
                      .|++.++.
T Consensus       634 qLVe~Gaa  641 (752)
T KOG0515|consen  634 QLVESGAA  641 (752)
T ss_pred             HHHhccce
Confidence            77777664

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.78  E-value=7e-09  Score=83.29  Aligned_cols=60  Identities=15%  Similarity=0.144  Sum_probs=50.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCc
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPA  246 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~  246 (507)
                      .|+||||+||-.|..++++.|+..++++ +.+|+.|-||                   |.-|+..||.++|++||+.+++
T Consensus        33 ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITP-------------------LLsAvwEGH~~cVklLL~~GAd   92 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITP-------------------LLSAVWEGHRDCVKLLLQNGAD   92 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcH-------------------HHHHHHHhhHHHHHHHHHcCcc
Confidence            7999999999999999999999999998 5555555555                   4559999999988888877665

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.67  E-value=3.6e-08  Score=94.55  Aligned_cols=95  Identities=20%  Similarity=0.152  Sum_probs=76.8

Q ss_pred             CCCcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHH
Q 039657          158 NGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMV  237 (507)
Q Consensus       158 ~~~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv  237 (507)
                      .+.+|..|.+|.|+|..|+.+|+.++|++||+.++|+...++..+.||||+                   ||..|+.++.
T Consensus        35 vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmF-------------------AALSGn~dvc   95 (396)
T KOG1710|consen   35 VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMF-------------------AALSGNQDVC   95 (396)
T ss_pred             hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHH-------------------HHHcCCchHH
Confidence            445688899999999999999999999999999999965555555555555                   9999999955


Q ss_pred             HHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          238 EQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       238 ~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +.|++.+.                 -....+.-|.|+-.+||--||.+.|.
T Consensus        96 rllldaGa-----------------~~~~vNsvgrTAaqmAAFVG~H~CV~  129 (396)
T KOG1710|consen   96 RLLLDAGA-----------------RMYLVNSVGRTAAQMAAFVGHHECVA  129 (396)
T ss_pred             HHHHhccC-----------------ccccccchhhhHHHHHHHhcchHHHH
Confidence            55555533                 34667788999999999999988764

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=4e-08  Score=100.93  Aligned_cols=57  Identities=23%  Similarity=0.204  Sum_probs=48.4

Q ss_pred             cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          215 AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       215 ~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      ...+..|-||||-|+-.||.+||++|++.             +    +++|+.|.+||||||.||.-++..+++
T Consensus       577 SqpNdEGITaLHNAiCaghyeIVkFLi~~-------------g----anVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  577 SQPNDEGITALHNAICAGHYEIVKFLIEF-------------G----ANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             CCCCccchhHHhhhhhcchhHHHHHHHhc-------------C----CcccCccCCCCchhhhhhhcCchHHHH
Confidence            57789999999999999999966666655             3    568999999999999999988866553

>PF13606 Ank_3: Ankyrin repeat

Probab=98.33  E-value=5.4e-07  Score=57.98  Aligned_cols=28  Identities=29%  Similarity=0.297  Sum_probs=26.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcc
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAV  194 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~  194 (507)
                      +|+||||+||+.|+.|+|+.||++++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4899999999999999999999999886

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.28  E-value=1.2e-06  Score=84.35  Aligned_cols=109  Identities=19%  Similarity=0.150  Sum_probs=81.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCch
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPAN  247 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~  247 (507)
                      -..||.-|..+|+++-...||+.-.++ +.+|.+|.+||..                   |+..|+.++|+.||+.++| 
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~Lah-------------------AaykGnl~~v~lll~~gaD-   70 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAH-------------------AAYKGNLTLVELLLELGAD-   70 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHH-------------------HHhcCcHHHHHHHHHhCCC-
Confidence            467999999999999999999875554 5555555555555                   9999999977777777665 


Q ss_pred             HHHHHHHhcccccccccc-cccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcc
Q 039657          248 QYLQALLNRKILGESIFR-QVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPK  326 (507)
Q Consensus       248 ~vv~~Ll~~~~~~~~~in-~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpl  326 (507)
                                      +| .++..+.||||.||..|+.++.++               .++   .+......|.-|+|+-
T Consensus        71 ----------------vN~~qhg~~YTpLmFAALSGn~dvcrl---------------lld---aGa~~~~vNsvgrTAa  116 (396)
T KOG1710|consen   71 ----------------VNDKQHGTLYTPLMFAALSGNQDVCRL---------------LLD---AGARMYLVNSVGRTAA  116 (396)
T ss_pred             ----------------cCcccccccccHHHHHHHcCCchHHHH---------------HHh---ccCccccccchhhhHH
Confidence                            34 688899999999999999887642               001   1223357888899998


Q ss_pred             ccccc
Q 039657          327 EVFTE  331 (507)
Q Consensus       327 dl~~~  331 (507)
                      +++.-
T Consensus       117 qmAAF  121 (396)
T KOG1710|consen  117 QMAAF  121 (396)
T ss_pred             HHHHH
Confidence            88653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.26  E-value=1e-06  Score=58.01  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=28.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCccccccc
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELN  199 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d  199 (507)
                      +|.||||+||..|+.++++.|++.++++ +.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            4899999999999999999999999997 5554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.26  E-value=5.3e-07  Score=58.04  Aligned_cols=27  Identities=30%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             CCCCccchhhhcCCHHHHHHHHhhCCc
Q 039657          220 RKETPMLIAARMGVTEMVEQILDTFPA  246 (507)
Q Consensus       220 ~g~TpLH~Aa~~g~~~iv~~Ll~~~~~  246 (507)
                      +|+||||+||++|+.|+|++||++++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            588999999999999988888887665

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.12  E-value=1.5e-06  Score=93.72  Aligned_cols=85  Identities=14%  Similarity=0.107  Sum_probs=69.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHH
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQIL  241 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll  241 (507)
                      |..|..|+|+||+|+..|..++++-||++|.++ ..+|.+                  .|+||||-|..+|+.|++-.| 
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~E------------------SG~taLHRaiyyG~idca~lL-  105 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEE------------------SGYTALHRAIYYGNIDCASLL-  105 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCcee-eecccc------------------ccchHhhHhhhhchHHHHHHH-
Confidence            566889999999999999999999999999998 555543                  467777779999999955444 


Q ss_pred             hhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcC
Q 039657          242 DTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG  282 (507)
Q Consensus       242 ~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g  282 (507)
                                  ++.|    ..+..+|++|.+||.+-++..
T Consensus       106 ------------L~~g----~SL~i~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  106 ------------LSKG----RSLRIKDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             ------------HhcC----CceEEecccCCCHHHHHhhcc
Confidence                        4445    567899999999999888743

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.04  E-value=2.8e-06  Score=55.85  Aligned_cols=27  Identities=26%  Similarity=0.361  Sum_probs=21.6

Q ss_pred             CCCCccchhhhcCCHHHHHHHHhhCCc
Q 039657          220 RKETPMLIAARMGVTEMVEQILDTFPA  246 (507)
Q Consensus       220 ~g~TpLH~Aa~~g~~~iv~~Ll~~~~~  246 (507)
                      +|+||||+|+.+|+.+++++|++++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            588889999999999977777765443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.93  E-value=2.2e-05  Score=87.62  Aligned_cols=111  Identities=14%  Similarity=0.062  Sum_probs=88.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhh-CCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKS-YPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      .-.|+|-+|+++..|+.-.++.+++. +-.. ...|.+|+..+|+++..+-              +.+|..||||||||+
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence            45699999999999999999999996 3333 6778999999999555543              789999999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      ..|+..++..|++...++-           ...+....+-.|-|+-.+|..+|+..+-
T Consensus       650 ~~G~e~l~a~l~~lga~~~-----------~~tdps~~~p~g~ta~~la~s~g~~gia  696 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADPG-----------AVTDPSPETPGGKTAADLARANGHKGIA  696 (975)
T ss_pred             hcCHHHHHHHHHHhccccc-----------cccCCCCCCCCCCchhhhhhcccccchH
Confidence            9999998888887665511           0122345666799999999999997653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.83  E-value=3.8e-05  Score=78.96  Aligned_cols=87  Identities=18%  Similarity=0.170  Sum_probs=67.4

Q ss_pred             CCCCCChH------HHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHH
Q 039657          164 GTEKMDNK------ILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMV  237 (507)
Q Consensus       164 ~d~~g~Tp------Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv  237 (507)
                      +|++|.|.      ||..++.|+.|..-.||..|++. +..+.                  ..|.||||.||+.|+.--+
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~-N~~hp------------------ekg~TpLHvAAk~Gq~~Q~  183 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQA-NFFHP------------------EKGNTPLHVAAKAGQILQA  183 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHccccc-CCCCc------------------ccCCchhHHHHhccchhhh
Confidence            35555554      99999999999999999999987 33332                  3466777779999999855


Q ss_pred             HHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcc
Q 039657          238 EQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRP  286 (507)
Q Consensus       238 ~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~  286 (507)
                      ++|+-+             |    ++++++|.+|.||+.+|-..||.++
T Consensus       184 ElL~vY-------------G----AD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  184 ELLAVY-------------G----ADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             hHHhhc-------------c----CCCCCCCCCCCcHHHHHHhcCchHH
Confidence            555544             3    5679999999999999999999765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.82  E-value=3.7e-05  Score=80.38  Aligned_cols=60  Identities=17%  Similarity=0.160  Sum_probs=48.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhC
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTF  244 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~  244 (507)
                      +.+|+|+||+||+.|++.+.++|+=.+.|+ ..+|.+                   |+|||.||-+.|..+++..|+.++
T Consensus       658 ~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~-------------------g~t~l~yar~a~sqec~d~llq~g  717 (749)
T KOG0705|consen  658 EGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAH-------------------GRTALFYARQAGSQECIDVLLQYG  717 (749)
T ss_pred             CCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccC-------------------CchhhhhHhhcccHHHHHHHHHcC
Confidence            457899999999999999999999889887 444544                   555555599999999888877763

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.80  E-value=2.7e-05  Score=80.98  Aligned_cols=91  Identities=24%  Similarity=0.210  Sum_probs=69.8

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcc-cccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHH
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAV-IQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVE  238 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~-~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~  238 (507)
                      ++-.++.+..|-||+|++.|+-|+|+++|+++|.- ++.                   .|..|.|+||-||-.|+..   
T Consensus       891 ~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~-------------------~de~get~lhkaa~~~~r~---  948 (1004)
T KOG0782|consen  891 SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDM-------------------ADETGETALHKAACQRNRA---  948 (1004)
T ss_pred             ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHH-------------------HhhhhhHHHHHHHHhcchH---
Confidence            44455777788999999999999999999998753 333                   3455666666688889988   


Q ss_pred             HHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcc
Q 039657          239 QILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRP  286 (507)
Q Consensus       239 ~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~  286 (507)
                                +..+|+..|    +.+...|..|.||-.-|-+.|+.++
T Consensus       949 ----------vc~~lvdag----asl~ktd~kg~tp~eraqqa~d~dl  982 (1004)
T KOG0782|consen  949 ----------VCQLLVDAG----ASLRKTDSKGKTPQERAQQAGDPDL  982 (1004)
T ss_pred             ----------HHHHHHhcc----hhheecccCCCChHHHHHhcCCchH
Confidence                      555666656    5678899999999999999998775

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.80  E-value=3.5e-05  Score=80.09  Aligned_cols=67  Identities=15%  Similarity=0.147  Sum_probs=53.9

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHH
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQ  239 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~  239 (507)
                      .++..|..|.||||.|+..|+.+.++.|+..++++ ..+|++||+|||.                   |+..|+.+++..
T Consensus        47 ~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~E-------------------Av~~g~~q~i~~  106 (560)
T KOG0522|consen   47 VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHE-------------------AVSTGNEQIITE  106 (560)
T ss_pred             eeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHH-------------------HHHcCCHHHHHH
Confidence            34566888999999999999999999999999987 5555555555555                   999999998888


Q ss_pred             HHhhCCc
Q 039657          240 ILDTFPA  246 (507)
Q Consensus       240 Ll~~~~~  246 (507)
                      +|.+...
T Consensus       107 vlr~~~~  113 (560)
T KOG0522|consen  107 VLRHLKY  113 (560)
T ss_pred             HHHHhHH
Confidence            8887644

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.72  E-value=3e-05  Score=80.61  Aligned_cols=108  Identities=24%  Similarity=0.224  Sum_probs=76.1

Q ss_pred             HHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHH
Q 039657          172 ILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQ  251 (507)
Q Consensus       172 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~  251 (507)
                      |..|+..+++--+++.-..+.++ -.+                   +.+-+|-||+|++.|+-+||++||+++|.     
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~-------------------~~~~~sllh~a~~tg~~eivkyildh~p~-----  924 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQ-------------------GPDHCSLLHYAAKTGNGEIVKYILDHGPS-----  924 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-Eee-------------------CcchhhHHHHHHhcCChHHHHHHHhcCCH-----
Confidence            56777777766566655555555 233                   44445556669999999999999999996     


Q ss_pred             HHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccc
Q 039657          252 ALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTE  331 (507)
Q Consensus       252 ~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~  331 (507)
                                .++++.|..|.|+||-|+-.++-.+..+       .        |+   ........|.+|+||.+-+..
T Consensus       925 ----------elld~~de~get~lhkaa~~~~r~vc~~-------l--------vd---agasl~ktd~kg~tp~eraqq  976 (1004)
T KOG0782|consen  925 ----------ELLDMADETGETALHKAACQRNRAVCQL-------L--------VD---AGASLRKTDSKGKTPQERAQQ  976 (1004)
T ss_pred             ----------HHHHHHhhhhhHHHHHHHHhcchHHHHH-------H--------Hh---cchhheecccCCCChHHHHHh
Confidence                      5678999999999999998887554321       0        00   112235678899999877655


Q ss_pred             c
Q 039657          332 T  332 (507)
Q Consensus       332 ~  332 (507)
                      .
T Consensus       977 a  977 (1004)
T KOG0782|consen  977 A  977 (1004)
T ss_pred             c
Confidence            4

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.70  E-value=4.1e-05  Score=79.65  Aligned_cols=82  Identities=21%  Similarity=0.240  Sum_probs=61.2

Q ss_pred             hHHHHHHHcCCHHHHHHHhhhC-CcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCchH
Q 039657          170 NKILLAAKIGVTEMVDRFLKSY-PAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQ  248 (507)
Q Consensus       170 TpLh~Aa~~G~~~~v~~Ll~~~-~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~  248 (507)
                      -|+|+++.....+-+...+... ...+                   +.+|..|+||||+|+.-|+.+.++.|+..++   
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~i-------------------d~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~A---   79 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVI-------------------DRRDPPGRTPLHLAVRLGHVEAARILLSAGA---   79 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhcee-------------------ccccCCCCccHHHHHHhcCHHHHHHHHhcCC---
Confidence            3699999988887766655443 2223                   3345566677777999999997777766644   


Q ss_pred             HHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          249 YLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       249 vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                                    .+..+|++|+||||.|+..|+.+++
T Consensus        80 --------------dv~~kN~~gWs~L~EAv~~g~~q~i  104 (560)
T KOG0522|consen   80 --------------DVSIKNNEGWSPLHEAVSTGNEQII  104 (560)
T ss_pred             --------------CccccccccccHHHHHHHcCCHHHH
Confidence                          4678999999999999999997654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.70  E-value=2.8e-05  Score=84.25  Aligned_cols=44  Identities=7%  Similarity=-0.050  Sum_probs=42.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHH
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFE  211 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~  211 (507)
                      .|+||||.|...|++|++..||+++..+ ..+|++|..||.+-++
T Consensus        85 SG~taLHRaiyyG~idca~lLL~~g~SL-~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   85 SGYTALHRAIYYGNIDCASLLLSKGRSL-RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ccchHhhHhhhhchHHHHHHHHhcCCce-EEecccCCCHHHHHhh
Confidence            5999999999999999999999999987 9999999999999887

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.46  E-value=8.2e-05  Score=83.41  Aligned_cols=88  Identities=23%  Similarity=0.220  Sum_probs=69.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhC
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTF  244 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~  244 (507)
                      -..|.|+||.|+..|..-+++.|++.++++ +..                   |..|+||||.+...|+...+.      
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~-------------------d~~g~~plh~~~~~g~~~~~~------  706 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADV-NAL-------------------DSKGRTPLHHATASGHTSIAC------  706 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcc-hhh-------------------hccCCCcchhhhhhcccchhh------
Confidence            345799999999999999999999999996 444                   455556666699999999544      


Q ss_pred             CchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccccc
Q 039657          245 PANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLL  289 (507)
Q Consensus       245 ~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~  289 (507)
                             ++++++    +..++.|.+|.+||++|....+.+++.+
T Consensus       707 -------~ll~~~----a~~~a~~~~~~~~l~~a~~~~~~d~~~l  740 (785)
T KOG0521|consen  707 -------LLLKRG----ADPNAFDPDGKLPLDIAMEAANADIVLL  740 (785)
T ss_pred             -------hhcccc----ccccccCccCcchhhHHhhhccccHHHH
Confidence                   444444    5678999999999999988877666543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.43  E-value=0.00034  Score=72.16  Aligned_cols=57  Identities=19%  Similarity=0.151  Sum_probs=45.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhh
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDT  243 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~  243 (507)
                      .|.||||.||+.|...-+++|+-.|+|+ ...|.+|+||+-+                   |-..||-++.+.|++.
T Consensus       166 kg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~-------------------AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  166 KGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDY-------------------ARQGGHHELAERLVEI  222 (669)
T ss_pred             cCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHH-------------------HHhcCchHHHHHHHHH
Confidence            4999999999999999999999999998 6666666666666                   6666776666666554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.08  E-value=0.00035  Score=78.41  Aligned_cols=81  Identities=23%  Similarity=0.213  Sum_probs=62.3

Q ss_pred             cCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhh
Q 039657          217 QSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQM  296 (507)
Q Consensus       217 ~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~  296 (507)
                      +-..|.|+||.|+.+|...+++.             |+..+    +.+|+.|..|+||||.+...|+.....+       
T Consensus       652 ~~~~~~s~lh~a~~~~~~~~~e~-------------ll~~g----a~vn~~d~~g~~plh~~~~~g~~~~~~~-------  707 (785)
T KOG0521|consen  652 VLCIGCSLLHVAVGTGDSGAVEL-------------LLQNG----ADVNALDSKGRTPLHHATASGHTSIACL-------  707 (785)
T ss_pred             hhhcccchhhhhhccchHHHHHH-------------HHhcC----CcchhhhccCCCcchhhhhhcccchhhh-------
Confidence            34568999999999999995554             44445    5589999999999999999999765421       


Q ss_pred             HHHHHHhhhhhccCCccccccccCCCCCcccccccc
Q 039657          297 QWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       297 ~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                                 ...+....++.+.+|++|++++.+.
T Consensus       708 -----------ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  708 -----------LLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             -----------hccccccccccCccCcchhhHHhhh
Confidence                       1114446678999999999988554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.06  E-value=0.0011  Score=60.62  Aligned_cols=66  Identities=18%  Similarity=0.146  Sum_probs=55.1

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHH
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQ  239 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~  239 (507)
                      ++|..|..|||||+.||..|..+.+..|+.++...+...|+.|.+++.+                   |-+.|+.++|+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaql-------------------aek~g~~~fvh~   64 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQL-------------------AEKGGAQAFVHS   64 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHH-------------------HHhcChHHHHHH
Confidence            4578899999999999999999999999999955457777777777666                   889999997777


Q ss_pred             HHhhC
Q 039657          240 ILDTF  244 (507)
Q Consensus       240 Ll~~~  244 (507)
                      |.+..
T Consensus        65 lfe~~   69 (223)
T KOG2384|consen   65 LFEND   69 (223)
T ss_pred             HHHHh
Confidence            66653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.06  E-value=0.0007  Score=71.11  Aligned_cols=84  Identities=20%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             HHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHH
Q 039657          171 KILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYL  250 (507)
Q Consensus       171 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv  250 (507)
                      -|..|+...++..+-+||.++...  ..|+              ..-+.+|+||||+||+.|++.+..+|+=+       
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~--e~~~--------------t~~~~~grt~LHLa~~~gnVvl~QLLiWy-------  683 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSRE--EVNE--------------TCGEGDGRTALHLAARKGNVVLAQLLIWY-------  683 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCch--hhhc--------------cccCCCCcchhhhhhhhcchhHHHHHHHh-------
Confidence            466777777888888888776432  1111              23456788888889999999955555433       


Q ss_pred             HHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          251 QALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       251 ~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                            +    .++.++|.+|+|+|.+|-+.|..+.+
T Consensus       684 ------g----~dv~~rda~g~t~l~yar~a~sqec~  710 (749)
T KOG0705|consen  684 ------G----VDVMARDAHGRTALFYARQAGSQECI  710 (749)
T ss_pred             ------C----ccceecccCCchhhhhHhhcccHHHH
Confidence                  3    56789999999999999999876654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.04  E-value=0.00035  Score=71.78  Aligned_cols=65  Identities=17%  Similarity=0.147  Sum_probs=50.6

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHH
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQ  239 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~  239 (507)
                      +.+..|-+.+|+||.||..|++++++.|++......                   +.+|..|+|||--|..-+|.+++++
T Consensus       531 D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~-------------------~~kDRw~rtPlDdA~~F~h~~v~k~  591 (622)
T KOG0506|consen  531 DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDP-------------------DPKDRWGRTPLDDAKHFKHKEVVKL  591 (622)
T ss_pred             cccccccccchhheeecccCceeHHHHHHHHHcCCC-------------------ChhhccCCCcchHhHhcCcHHHHHH
Confidence            456668889999999999999999999998643322                   4456667777777999999996666


Q ss_pred             HHhh
Q 039657          240 ILDT  243 (507)
Q Consensus       240 Ll~~  243 (507)
                      |-+.
T Consensus       592 L~~~  595 (622)
T KOG0506|consen  592 LEEA  595 (622)
T ss_pred             HHHH
Confidence            5543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.56  E-value=0.0036  Score=62.87  Aligned_cols=58  Identities=16%  Similarity=0.251  Sum_probs=46.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCc
Q 039657          169 DNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPA  246 (507)
Q Consensus       169 ~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~  246 (507)
                      .--|..||+.|+++.|+.|++.+.++ +..|.                   ....||.+|+..||.++|+.||+.++-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~-------------------fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDR-------------------FDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhc-------------------ccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            44688999999999999999999887 55554                   455555559999999988888887664

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.24  E-value=0.14  Score=56.95  Aligned_cols=106  Identities=20%  Similarity=0.153  Sum_probs=67.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCc-
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPA-  246 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~-  246 (507)
                      +.--...||+.|+...|+..++....-  ..|.              |.+|.-|+++||+|..+.+.|++++|+++.-. 
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~--~lni--------------nc~d~lGr~al~iai~nenle~~eLLl~~~~~~   88 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVS--KLNI--------------NCRDPLGRLALHIAIDNENLELQELLLDTSSEE   88 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhcccc--ccch--------------hccChHhhhceecccccccHHHHHHHhcCcccc
Confidence            445677899999999999999875431  1111              45566666666777777777777777776533 


Q ss_pred             -h-----------HHHHHHHhcccccccc-----cc-cccCCCCcHHHHHHhcCCCccccc
Q 039657          247 -N-----------QYLQALLNRKILGESI-----FR-QVDSQGNSALHLAAKFGDHRPWLL  289 (507)
Q Consensus       247 -~-----------~vv~~Ll~~~~~~~~~-----in-~~D~~GnTpLHlAa~~g~~~~v~~  289 (507)
                       +           ..|++++.........     .+ ..=.-+-|||.+||..++++++++
T Consensus        89 gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~  149 (822)
T KOG3609|consen   89 GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQC  149 (822)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHH
Confidence             0           1366666553211111     11 222356899999999999998863

>smart00248 ANK ankyrin repeats

Probab=96.18  E-value=0.0068  Score=36.53  Aligned_cols=28  Identities=25%  Similarity=0.245  Sum_probs=25.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcc
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAV  194 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~  194 (507)
                      .|.||+|+|+..|+.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3789999999999999999999987754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=95.97  E-value=0.0039  Score=57.15  Aligned_cols=58  Identities=24%  Similarity=0.188  Sum_probs=45.3

Q ss_pred             cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          215 AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       215 ~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      |.+|..|||||+.||..|+.+             ++.||+.++.   +.+...|..|++++.+|-+.|+..++.
T Consensus         6 n~rD~fgWTalmcaa~eg~~e-------------avsyllgrg~---a~vgv~d~ssldaaqlaek~g~~~fvh   63 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNE-------------AVSYLLGRGV---AFVGVTDESSLDAAQLAEKGGAQAFVH   63 (223)
T ss_pred             cchhhhcchHHHHHhhhcchh-------------HHHHHhccCc---ccccccccccchHHHHHHhcChHHHHH
Confidence            556667777777799999999             5555555552   567889999999999999999977653

>smart00248 ANK ankyrin repeats

Probab=95.69  E-value=0.0086  Score=36.05  Aligned_cols=26  Identities=35%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             CCCCccchhhhcCCHHHHHHHHhhCC
Q 039657          220 RKETPMLIAARMGVTEMVEQILDTFP  245 (507)
Q Consensus       220 ~g~TpLH~Aa~~g~~~iv~~Ll~~~~  245 (507)
                      +|.||+|+|+..|+.++++.|++...
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47788888999999998888887654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=95.57  E-value=0.014  Score=65.98  Aligned_cols=72  Identities=11%  Similarity=0.008  Sum_probs=50.9

Q ss_pred             CCCcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHH
Q 039657          158 NGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMV  237 (507)
Q Consensus       158 ~~~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv  237 (507)
                      ...++-+|..||||||+|+..|+..++..|++.+++....+|-.              ..+-.|.|+--+|..+|+..+.
T Consensus       631 ~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps--------------~~~p~g~ta~~la~s~g~~gia  696 (975)
T KOG0520|consen  631 GVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPS--------------PETPGGKTAADLARANGHKGIA  696 (975)
T ss_pred             ccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCC--------------CCCCCCCchhhhhhcccccchH
Confidence            34556667777777777777777777777776665543333433              2344789999999999999988


Q ss_pred             HHHHhh
Q 039657          238 EQILDT  243 (507)
Q Consensus       238 ~~Ll~~  243 (507)
                      .+|-+.
T Consensus       697 ~~lse~  702 (975)
T KOG0520|consen  697 GYLSEK  702 (975)
T ss_pred             HHHhhh
Confidence            777766

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.06  E-value=0.016  Score=64.02  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=62.6

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC------------------------c
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN------------------------A  215 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~------------------------~  215 (507)
                      +.|.+|--|+++||.|..+-+.|+++.|++..-..        ..+|.+|...+.                        .
T Consensus        54 ninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~  125 (822)
T KOG3609|consen   54 NINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANS  125 (822)
T ss_pred             chhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCc
Confidence            45677888999999999999999999999865332        456777766553                        1


Q ss_pred             ccCCCCCCccchhhhcCCHHHHHHHHhhCCc
Q 039657          216 QQSGRKETPMLIAARMGVTEMVEQILDTFPA  246 (507)
Q Consensus       216 ~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~  246 (507)
                      ..-.-+-|||.+||..++.||++.||.++..
T Consensus       126 ~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen  126 PHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             ccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            2334578999999999999999999998766

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.89  E-value=0.03  Score=58.36  Aligned_cols=43  Identities=16%  Similarity=0.071  Sum_probs=34.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHH
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLL  208 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~  208 (507)
                      +-.-.|+||+||.+|..++|..+|+.+.|. ...|..|+||..+
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~l  469 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSL  469 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccc
Confidence            334689999999999999999999999887 5556665555444

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=91.48  E-value=0.12  Score=52.29  Aligned_cols=48  Identities=25%  Similarity=0.230  Sum_probs=39.4

Q ss_pred             cchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccccc
Q 039657          225 MLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLL  289 (507)
Q Consensus       225 LH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~  289 (507)
                      |-.||+.|..+             .+++|++.|    ..+|++|...++||.+|+.-||..++++
T Consensus        40 lceacR~GD~d-------------~v~~LVetg----vnVN~vD~fD~spL~lAsLcGHe~vvkl   87 (516)
T KOG0511|consen   40 LCEACRAGDVD-------------RVRYLVETG----VNVNAVDRFDSSPLYLASLCGHEDVVKL   87 (516)
T ss_pred             HHHHhhcccHH-------------HHHHHHHhC----CCcchhhcccccHHHHHHHcCcHHHHHH
Confidence            45599999999             555555544    5789999999999999999999888764

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=87.10  E-value=0.49  Score=49.66  Aligned_cols=47  Identities=21%  Similarity=0.127  Sum_probs=37.5

Q ss_pred             ccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHH
Q 039657          216 QQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAA  279 (507)
Q Consensus       216 ~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa  279 (507)
                      ..+.--.|+||+|+.+|..++|.+||+.+.                 +...+|..|.||-.+++
T Consensus       425 ~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~-----------------Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  425 ANDYLTSTFLHYAAAQGARKCVKYFLEEGC-----------------DPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccccchHHHHHHhcchHHHHHHHHHhcC-----------------CchhcccCCCCcccccc
Confidence            344556789999999999997777776643                 45788999999998887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	507
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
2etb_A	256	Transient receptor potential cation channel subfam	6e-05
2etb_A	256	Transient receptor potential cation channel subfam	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	4e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-05
2pnn_A	273	Transient receptor potential cation channel subfa	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 8e-08
 Identities = 62/443 (13%), Positives = 113/443 (25%), Gaps = 135/443 (30%)

Query: 140 DTGEISHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKS--YPAVIQE 197
           +TGE  +Q      K I +    +  +  D K        V +M    L       +I  
Sbjct: 10  ETGEHQYQY-----KDILSVFEDAFVDNFDCK-------DVQDMPKSILSKEEIDHIIMS 57

Query: 198 LNTSEKNLVLL-TFEKKNAQQSGR-------KETPMLIAA-------RMGVTEMVEQILD 242
            +     L L  T   K  +   +            L++           +T M  +  D
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 243 -TFPANQYLQAL-LNRKILGESI---FRQVDSQGNSALH---------LAA--------- 279
             +  NQ      ++R      +     ++    N  +          +A          
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 280 -KFGDHRPWL------LPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET 332
            K      WL       P   L+M  ++  YQ       R   +    N K         
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHS---SNIKLRIHSIQAE 233

Query: 333 HKDLVKEGKE----------WLPKTSE----SCSVVAALIAT----VAFATSATVPGGVD 374
            + L+K                 K       SC +   L+ T    V    SA     + 
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRFKQVTDFLSAATTTHIS 290

Query: 375 QESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRYQEKDFVKDLPRKLLLGL 434
            +        + V ++                                 +DLPR++L   
Sbjct: 291 LDHHSMTLTPDEVKSLL------LKYLDCR------------------PQDLPREVLTTN 326

Query: 435 TTLFTSIAAILISFCSGHSFMLKDEM-RSAAYPIYAATCLPMTF-FALAQLP------LY 486
               + IA             ++D +     +       L      +L  L       ++
Sbjct: 327 PRRLSIIAE-----------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 487 FDLIWAIFK---KVPQRSYKVIS 506
             L  ++F     +P     ++S
Sbjct: 376 DRL--SVFPPSAHIP---TILLS 393

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 21/110 (19%)

Query: 174 LAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGV 233
           +A +    + V + L    A +              F+K         E P+ +AA    
Sbjct: 96  IAIEKRSLQCV-KLLVENGADVHLRACGRF------FQKHQGTCFYFGELPLSLAACTKQ 148

Query: 234 TEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD 283
            ++V  +L+    N +  A L             DS GN+ LH      D
Sbjct: 149 WDVVTYLLE----NPHQPASLEAT----------DSLGNTVLHALVMIAD 184

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 21/119 (17%)

Query: 170 NKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAA 229
           +++      GV E +   L+        L  + K L    + + +   +G  +T ++ A 
Sbjct: 4   DRLFSVVSRGVPEELTGLLE-------YLRWNSKYLTDSAYTEGS---TG--KTCLMKAV 51

Query: 230 ---RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHR 285
              + GV   +  +L     +   + L+N +   E        QG+SALH+A +    +
Sbjct: 52  LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDE------FYQGHSALHIAIEKRSLQ 104

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 26/113 (23%)

Query: 174 LAAKIGVTEMVDRFLKSYPAVIQELNTSEKN----LVLLTFEKKNAQQSGRKETPMLIAA 229
           LAA     ++V  +L   P     L  ++      L  L     N+     + + ++I  
Sbjct: 142 LAACTKQWDVV-TYLLENPHQPASLEATDSLGNTVLHALVMIADNSP----ENSALVIHM 196

Query: 230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG 282
             G+ +M  ++  T         L              + QG + L LAAK G
Sbjct: 197 YDGLLQMGARLCPT-------VQLEEIS----------NHQGLTPLKLAAKEG 232

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 20/110 (18%)

Query: 174 LAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGV 233
           +A +      V   L    A     +   +        K         E P+ +AA    
Sbjct: 99  IAIERRCKHYV-ELLVEKGA-----DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

Query: 234 TEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD 283
             +V  + +    N + QA L R+          DS+GN+ LH      D
Sbjct: 153 PHIVHYLTE----NGHKQADLRRQ----------DSRGNTVLHALVAIAD 188

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 20/110 (18%)

Query: 174 LAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGV 233
           +A +     +V   L    A     +           + K        E P+ +AA    
Sbjct: 107 IAIERRNMTLV-TLLVENGA-----DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160

Query: 234 TEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD 283
             +V+ +L     N +  A ++ +          DS GN+ LH   +  D
Sbjct: 161 LAIVKFLLQ----NSWQPADISAR----------DSVGNTVLHALVEVAD 196

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	507
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.92
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.91
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.9
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.9
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.9
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.9
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.9
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.89
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.89
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.89
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.89
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.89
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.89
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.89
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.88
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.88
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.88
2rfa_A	232	Transient receptor potential cation channel subfa	99.87
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.87
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.87
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.86
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.86
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.86
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.86
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.86
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.86
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.86
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.85
2etb_A	256	Transient receptor potential cation channel subfam	99.85
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.85
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.85
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.85
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.85
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.85
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.85
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.84
2rfa_A	232	Transient receptor potential cation channel subfa	99.84
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.84
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.84
2pnn_A	273	Transient receptor potential cation channel subfa	99.84
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.84
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.84
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.84
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.83
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.83
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.83
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.83
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.83
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.83
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.82
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.82
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.82
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.82
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.82
2etb_A	256	Transient receptor potential cation channel subfam	99.81
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.81
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.81
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.81
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.81
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.81
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.81
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.8
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.8
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.8
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.8
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.8
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.79
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.78
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.78
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.78
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.77
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.77
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.77
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.77
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.77
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.75
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.75
2pnn_A	273	Transient receptor potential cation channel subfa	99.75
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.74
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.73
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.73
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.71
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.7
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.7
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.7
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.69
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.67
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.66
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.65
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.65
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.65
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.64
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.64
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.62
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.61
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.6
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.6
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.59
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.58
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.57
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.57
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.5
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.49
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.48
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.44
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.43
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.36

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=2.4e-26  Score=223.41  Aligned_cols=135  Identities=9%  Similarity=0.063  Sum_probs=110.7

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      +|..|+||||+|+..|+.++++.|++.++..++.+|.+|+||||+|+..++              +.+|.+|+||||+|+
T Consensus        86 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~  165 (253)
T 1yyh_A           86 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA  165 (253)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            356789999999999999999999999884458889999999999998887              678889999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhcc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKS  309 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~  309 (507)
                      .+|+.++|++|+++             +    +.++.+|..|+||||+|+..|+.+++++               .++  
T Consensus       166 ~~~~~~~v~~Ll~~-------------g----a~~~~~~~~g~tpL~~A~~~~~~~~v~~---------------Ll~--  211 (253)
T 1yyh_A          166 AVNNVDAAVVLLKN-------------G----ANKDMQNNREETPLFLAAREGSYETAKV---------------LLD--  211 (253)
T ss_dssp             HHTCHHHHHHHHHT-------------T----CCTTCCCTTSCCHHHHHHHHTCHHHHHH---------------HHH--
T ss_pred             HcCCHHHHHHHHHc-------------C----CCCCCcCCCCCCHHHHHHHCCCHHHHHH---------------HHH--
Confidence            99999966666655             3    4578999999999999999999877632               011  


Q ss_pred             CCccccccccCCCCCccccccccc
Q 039657          310 MPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       310 ~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                       ...+.+.+|..|+||++++.+..
T Consensus       212 -~ga~~~~~d~~g~tpl~~A~~~g  234 (253)
T 1yyh_A          212 -HFANRDITDHMDRLPRDIAQERM  234 (253)
T ss_dssp             -TTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             -cCCCccccccCCCCHHHHHHHcC
Confidence             13356789999999999987663

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=5.6e-26  Score=222.64  Aligned_cols=206  Identities=12%  Similarity=0.051  Sum_probs=138.3

Q ss_pred             CcccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhcccc---CCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcC
Q 039657            1 LVNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCID---LSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGL   77 (507)
Q Consensus         1 lv~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~---v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   77 (507)
                      +++.+|++|.||||++|+       ..+...++.++-+...   ++..+  .....|                       
T Consensus         1 i~~~~d~~g~t~L~~A~~-------~g~~~~v~~Ll~~g~~~~~~~~~~--~~g~t~-----------------------   48 (282)
T 1oy3_D            1 VFGYVTEDGDTALHLAVI-------HQHEPFLDFLLGFSAGHEYLDLQN--DLGQTA-----------------------   48 (282)
T ss_dssp             CCCCCCTTCCCHHHHHHH-------TTCHHHHHHHHHHHTTSGGGGCCC--TTSCCH-----------------------
T ss_pred             CCCccCCCCCcHHHHHHH-------cCCHHHHHHHHhcCCCcccccccC--CCCCCH-----------------------
Confidence            578999999999999995       4456677777765544   22111  111111                       


Q ss_pred             CchhhhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCcccccccccccccccc
Q 039657           78 GIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIE  157 (507)
Q Consensus        78 g~~~i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~  157 (507)
                            -.++.+..|   .++++.|+++++..                                                
T Consensus        49 ------L~~A~~~g~---~~~v~~Ll~~ga~~------------------------------------------------   71 (282)
T 1oy3_D           49 ------LHLAAILGE---ASTVEKLYAAGAGV------------------------------------------------   71 (282)
T ss_dssp             ------HHHHHHHTC---HHHHHHHHHTTCCS------------------------------------------------
T ss_pred             ------HHHHHHcCC---HHHHHHHHHcCCCC------------------------------------------------
Confidence                  122333344   37889999986533                                                


Q ss_pred             CCCcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcc-------------------------------------------
Q 039657          158 NGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAV-------------------------------------------  194 (507)
Q Consensus       158 ~~~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~-------------------------------------------  194 (507)
                          +.+|..|.||||+|+..|+.++++.|++.+++.                                           
T Consensus        72 ----~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (282)
T 1oy3_D           72 ----LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW  147 (282)
T ss_dssp             ----SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCG
T ss_pred             ----CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhh
Confidence                233567999999999999999999999987651                                           


Q ss_pred             ---cccccCCCCcHHHHHHHcCC--------------cccC-CCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhc
Q 039657          195 ---IQELNTSEKNLVLLTFEKKN--------------AQQS-GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR  256 (507)
Q Consensus       195 ---~~~~d~~G~tpLh~A~~~~~--------------~~~d-~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~  256 (507)
                         ++.+|..|+||||+|+..++              +.++ ..|+||||+|+.+|+.++|++|+++             
T Consensus       148 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-------------  214 (282)
T 1oy3_D          148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-------------  214 (282)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-------------
T ss_pred             hhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-------------
Confidence               36678899999999999887              4555 3499999999999999966665555             


Q ss_pred             ccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccccccc
Q 039657          257 KILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHK  334 (507)
Q Consensus       257 ~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~~  334 (507)
                      +    +.+|.+|..|+||||+|+..|+.+++++               .++   .+.+++.+|++|.||++.+.....
T Consensus       215 g----ad~~~~d~~g~tpL~~A~~~~~~~~v~~---------------Ll~---~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          215 G----ADPTARMYGGRTPLGSALLRPNPILARL---------------LRA---HGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             T----CCTTCCCTTSCCHHHHHHTSSCHHHHHH---------------HHH---TTCCCCCCC---------------
T ss_pred             C----CCCcccccCCCCHHHHHHHcCCcHHHHH---------------HHH---cCCCcCcCCCcccccccccCCccc
Confidence            3    4579999999999999999999877632               011   244668999999999999877653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.92  E-value=6.7e-25  Score=210.11  Aligned_cols=133  Identities=17%  Similarity=0.091  Sum_probs=110.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCC----cccccccCCCCcHHHHHHHcCC--------------cccC-CCCCCcc
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYP----AVIQELNTSEKNLVLLTFEKKN--------------AQQS-GRKETPM  225 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~----~~~~~~d~~G~tpLh~A~~~~~--------------~~~d-~~g~TpL  225 (507)
                      |..|.||||+|+..|+.++++.|++.++    ++ +..|..|+||||+|+..++              +.++ ..|+|||
T Consensus        76 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L  154 (241)
T 1k1a_A           76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL  154 (241)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHH
Confidence            5679999999999999999999999987    54 7889999999999999887              4555 7899999


Q ss_pred             chhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhh
Q 039657          226 LIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQF  305 (507)
Q Consensus       226 H~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~  305 (507)
                      |+|+.+|+.+++++|++++                 ..+|.+|.+|+||||+|+..|+.++++.               .
T Consensus       155 ~~A~~~~~~~~v~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------L  202 (241)
T 1k1a_A          155 IHAVENNSLSMVQLLLQHG-----------------ANVNAQMYSGSSALHSASGRGLLPLVRT---------------L  202 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-----------------CCTTCBCTTSCBHHHHHHHHTCHHHHHH---------------H
T ss_pred             HHHHHcCCHHHHHHHHHcC-----------------CCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------H
Confidence            9999999999666666553                 4578999999999999999999876531               1


Q ss_pred             hhccCCccccccccCCCCCccccccccc
Q 039657          306 VKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       306 v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      ++   .+.+.+.+|.+|+||++++.+..
T Consensus       203 l~---~ga~~~~~~~~g~tpl~~A~~~~  227 (241)
T 1k1a_A          203 VR---SGADSSLKNCHNDTPLMVARSRR  227 (241)
T ss_dssp             HH---TTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             Hh---cCCCCCCcCCCCCCHHHHHHhcC
Confidence            11   23456789999999999987653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=1.1e-24  Score=208.44  Aligned_cols=204  Identities=19%  Similarity=0.240  Sum_probs=154.0

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      ++.+|++|.||||++|+       ......++.++-+...++..+....  .|.                          
T Consensus         4 ~~~~~~~g~t~L~~A~~-------~g~~~~v~~Ll~~g~~~~~~~~~g~--t~L--------------------------   48 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAE-------AGHVDICHMLVQAGANIDTCSEDQR--TPL--------------------------   48 (237)
T ss_dssp             CCCSSCCSCCHHHHHHH-------HTCHHHHHHHHHTTCCTTCCCTTCC--CHH--------------------------
T ss_pred             cccccCCCCCHHHHHHH-------cCcHHHHHHHHHcCCCcCccCCCCC--CHH--------------------------
Confidence            47789999999999995       3456677777777665544331111  111                          


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCc
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSA  161 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~  161 (507)
                         .++.+..|   .++++.|++++...                                                    
T Consensus        49 ---~~A~~~~~---~~~v~~Ll~~g~~~----------------------------------------------------   70 (237)
T 3b7b_A           49 ---MEAAENNH---LEAVKYLIKAGALV----------------------------------------------------   70 (237)
T ss_dssp             ---HHHHHTTC---HHHHHHHHTTTCCC----------------------------------------------------
T ss_pred             ---HHHHHhCC---HHHHHHHHhCCCCC----------------------------------------------------
Confidence               11222233   37888999885433                                                    


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      +..+..|.||||+|+..|+.++++.|++.++..++..|..|+||||+|+..++              +.+|.+|.||||+
T Consensus        71 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  150 (237)
T 3b7b_A           71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHW  150 (237)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHH
Confidence            22355799999999999999999999999855558899999999999999887              6788999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhh
Q 039657          228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVK  307 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~  307 (507)
                      |+..|+.+++++|++.+                 ..++.+|..|+||||+|+..|+.+++++               .++
T Consensus       151 A~~~~~~~~~~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~  198 (237)
T 3b7b_A          151 AAFSGCVDIAEILLAAK-----------------CDLHAVNIHGDSPLHIAARENRYDCVVL---------------FLS  198 (237)
T ss_dssp             HHHHCCHHHHHHHHTTT-----------------CCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------HHT
T ss_pred             HHHCCCHHHHHHHHHcC-----------------CCCCCcCCCCCCHHHHHHHhCCHhHHHH---------------HHH
Confidence            99999999666666554                 4578999999999999999999776531               011


Q ss_pred             ccCCccccccccCCCCCccccccccc
Q 039657          308 KSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       308 ~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                         .+.+.+.+|++|+||++++....
T Consensus       199 ---~gad~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          199 ---RDSDVTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             ---TTCCTTCCCTTSCCHHHHSCTTC
T ss_pred             ---cCCCCCccCCCCCCHHHHHHHHH
Confidence               24466789999999999997654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=5.2e-25  Score=230.57  Aligned_cols=148  Identities=17%  Similarity=0.141  Sum_probs=83.5

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      ..+..|.||||+|+..|+.++++.|++.++++ +..|..|+||||+|+..++              +.+|..|+||||+|
T Consensus       207 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  285 (437)
T 1n11_A          207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV  285 (437)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence            33445555555555555555555555555554 4555555555555555554              34455555555555


Q ss_pred             hhcCCHHHHHHHHhhCCc--------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          229 ARMGVTEMVEQILDTFPA--------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~--------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +..|+.+++++|++++.+                    -.++++|++.+    +.+|.+|..|+||||+|+..|+.++++
T Consensus       286 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----ad~n~~~~~g~t~L~~A~~~g~~~iv~  361 (437)
T 1n11_A          286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ----ADVNAKTKLGYSPLHQAAQQGHTDIVT  361 (437)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC----CCCCCCCCCCCCHHHHHHHCChHHHHH
Confidence            555555555555555433                    11355555554    455556666666666666665555432


Q ss_pred             cCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          289 LPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       289 ~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +             +  ++   .+.+.+.+|++|+||++++.+..
T Consensus       362 ~-------------L--l~---~ga~~~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          362 L-------------L--LK---NGASPNEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             H-------------H--HH---TTCCSCCCCSSSCCHHHHHHHTT
T ss_pred             H-------------H--HH---CcCCCCCCCCCCCCHHHHHHHcC
Confidence            1             0  11   23466789999999999987653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.91  E-value=3e-25  Score=218.80  Aligned_cols=135  Identities=17%  Similarity=0.176  Sum_probs=115.8

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      |.+|.+|+||||+||..|+.++|+.|++.++++ +..+.+|+||+|+|+..++              +.+|.+|+||||+
T Consensus        80 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~  158 (269)
T 4b93_B           80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIY  158 (269)
T ss_dssp             TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            445778999999999999999999999999997 8899999999999999887              6789999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhh
Q 039657          228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVK  307 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~  307 (507)
                      ||.+|+.++|++|++++                 +.+|.+|..|+||||+|+..|+.+++++               .++
T Consensus       159 A~~~g~~~~v~~Ll~~g-----------------advn~~~~~g~t~Lh~A~~~g~~~~v~~---------------Ll~  206 (269)
T 4b93_B          159 ACSGGHHELVALLLQHG-----------------ASINASNNKGNTALHEAVIEKHVFVVEL---------------LLL  206 (269)
T ss_dssp             HHHTTCGGGHHHHHHTT-----------------CCTTCBCTTSCBHHHHHHHTTCHHHHHH---------------HHH
T ss_pred             HHHCCCHHHHHHHHHCC-----------------CCCCccccCCCcHHHHHHHcCCHHHHHH---------------HHH
Confidence            99999999666666553                 4579999999999999999999887642               111


Q ss_pred             ccCCccccccccCCCCCcccccccc
Q 039657          308 KSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       308 ~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                         .+.+++.+|++|+||++++.+.
T Consensus       207 ---~Gad~~~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          207 ---HGASVQVLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             ---TTCCSCCCCTTSCCSGGGSCTT
T ss_pred             ---CCCCCCCcCCCCCCHHHHHHhC
Confidence               2346789999999999999654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=5.6e-24  Score=222.76  Aligned_cols=150  Identities=14%  Similarity=0.167  Sum_probs=104.4

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCcc
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPM  225 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpL  225 (507)
                      +.+..+..|.||||+|+..|+.++++.|++.++++ +..|.+|+||||+|+..++              +.++..|.|||
T Consensus       171 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  249 (437)
T 1n11_A          171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  249 (437)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            34555667777777777777777777777777765 6667777777777777665              45667777777


Q ss_pred             chhhhcCCHHHHHHHHhhCCc--------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCc
Q 039657          226 LIAARMGVTEMVEQILDTFPA--------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHR  285 (507)
Q Consensus       226 H~Aa~~g~~~iv~~Ll~~~~~--------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~  285 (507)
                      |+|+..|+.++|++|++.+++                    ..++++|++.+    ..+|.+|..|+||||+|+..|+.+
T Consensus       250 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~g~~~  325 (437)
T 1n11_A          250 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG----VMVDATTRMGYTPLHVASHYGNIK  325 (437)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT----CCTTCCCSSCCCHHHHHHHSSCSH
T ss_pred             HHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC----ccCCCCCCCCCCHHHHHHHcCcHH
Confidence            777777777777777776654                    12467777766    567777777777777777777766


Q ss_pred             ccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccccc
Q 039657          286 PWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       286 ~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      +++.             +  ++   ...+++.+|+.|.||++++...
T Consensus       326 ~v~~-------------L--l~---~gad~n~~~~~g~t~L~~A~~~  354 (437)
T 1n11_A          326 LVKF-------------L--LQ---HQADVNAKTKLGYSPLHQAAQQ  354 (437)
T ss_dssp             HHHH-------------H--HH---TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHH-------------H--Hh---cCCCCCCCCCCCCCHHHHHHHC
Confidence            6531             1  11   2345678888899999887654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.90  E-value=6.4e-24  Score=214.09  Aligned_cols=207  Identities=19%  Similarity=0.190  Sum_probs=144.9

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      +|.+|.+|.||||++|.       ..++..++.++-+...++..+...  ..|.                          
T Consensus        51 ~~~~d~~g~t~L~~A~~-------~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L--------------------------   95 (351)
T 3utm_A           51 CHASDGRKSTPLHLAAG-------YNRVRIVQLLLQHGADVHAKDKGG--LVPL--------------------------   95 (351)
T ss_dssp             CCCSSTTCCCHHHHHHH-------TTCHHHHHHHHHTTCCTTCCCTTC--CCHH--------------------------
T ss_pred             cccCCCCCCCHHHHHHH-------cCCHHHHHHHHHcCCCCCccCCCC--CcHH--------------------------
Confidence            46778899999999994       345677777777766554333111  1111                          


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCc
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSA  161 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~  161 (507)
                         .++....|   .++++.|++++...                                                    
T Consensus        96 ---~~A~~~g~---~~iv~~Ll~~g~~~----------------------------------------------------  117 (351)
T 3utm_A           96 ---HNACSYGH---YEVTELLLKHGACV----------------------------------------------------  117 (351)
T ss_dssp             ---HHHHHTTC---HHHHHHHHHTTCCT----------------------------------------------------
T ss_pred             ---HHHHHCCC---HHHHHHHHHCCCCC----------------------------------------------------
Confidence               12222333   37888899885433                                                    


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccc-------------------------------------------
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQEL-------------------------------------------  198 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~-------------------------------------------  198 (507)
                      +..|..|.||||+|+..|+.++++.|++.++++ +..                                           
T Consensus       118 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (351)
T 3utm_A          118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK  196 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHH
Confidence            233567999999999999999999999998875 333                                           


Q ss_pred             -----------cCCCCcHHHHHHHcCC-----------------cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHH
Q 039657          199 -----------NTSEKNLVLLTFEKKN-----------------AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYL  250 (507)
Q Consensus       199 -----------d~~G~tpLh~A~~~~~-----------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv  250 (507)
                                 +..|+||||+|+..++                 +.+|.+|+||||+|+.+|+.++|++|++        
T Consensus       197 ~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--------  268 (351)
T 3utm_A          197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK--------  268 (351)
T ss_dssp             HTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH--------
T ss_pred             HHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH--------
Confidence                       3556777777777643                 5677778888888888888885555554        


Q ss_pred             HHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccc
Q 039657          251 QALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFT  330 (507)
Q Consensus       251 ~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~  330 (507)
                           .+    +.+|.+|..|+||||+|+..|+.+++++               .++   .+.+.+.+|++|+||++++.
T Consensus       269 -----~g----a~~n~~d~~g~t~L~~A~~~~~~~~v~~---------------Ll~---~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          269 -----HG----AKMNALDSLGQTALHRAALAGHLQTCRL---------------LLS---YGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             -----TT----CCTTCCCTTSCCHHHHHHHHTCHHHHHH---------------HHH---TTCCTTCCCTTSCCHHHHSC
T ss_pred             -----CC----CCCCCcCCCCCCHHHHHHHcCcHHHHHH---------------HHH---cCCCCCCcCCCCCChhhhhh
Confidence                 44    5679999999999999999999887632               111   23456789999999999986


Q ss_pred             ccccccc
Q 039657          331 ETHKDLV  337 (507)
Q Consensus       331 ~~~~~l~  337 (507)
                      +.-.++.
T Consensus       322 ~~~~~~l  328 (351)
T 3utm_A          322 EAVQQIL  328 (351)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6544433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.90  E-value=7.9e-24  Score=209.82  Aligned_cols=199  Identities=15%  Similarity=0.127  Sum_probs=148.0

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      ++.+|.+|.||||++|.       ......++.++-....++..+...  ..|.                          
T Consensus        52 ~~~~~~~g~t~L~~Aa~-------~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L--------------------------   96 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAI-------HGHQLSLRNLISQGWAVNIITADH--VSPL--------------------------   96 (285)
T ss_dssp             TCSSSCCSCCHHHHHHH-------TTCHHHHHHHHHTTCCSCEECTTC--CCHH--------------------------
T ss_pred             ccCCCccCCCHHHHHHH-------cCCHHHHHHHHHCCCCCCCcCCCC--CCHH--------------------------
Confidence            35689999999999995       345667777777665554332111  1111                          


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCc
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSA  161 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~  161 (507)
                         .++....|   .++++.|++++...                                                    
T Consensus        97 ---~~A~~~g~---~~~v~~Ll~~ga~~----------------------------------------------------  118 (285)
T 3d9h_A           97 ---HEACLGGH---LSCVKILLKHGAQV----------------------------------------------------  118 (285)
T ss_dssp             ---HHHHHTTC---HHHHHHHHHTTCCS----------------------------------------------------
T ss_pred             ---HHHHHCCc---HHHHHHHHHCCCCC----------------------------------------------------
Confidence               12222333   37888999885433                                                    


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      +.+|..|.||||+|+..|+.++++.|++.++++ + .+.+|+||||+|+..|+              +.+|.+|+||||+
T Consensus       119 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~  196 (285)
T 3d9h_A          119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL  196 (285)
T ss_dssp             SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            334667999999999999999999999999886 3 35569999999999887              6789999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhh
Q 039657          228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVK  307 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~  307 (507)
                      |+.+|+.++|++|++.+++                 +| +|..|+||||+|+..|+.+++++             +  ++
T Consensus       197 A~~~~~~~~v~~Ll~~ga~-----------------~~-~~~~g~t~L~~A~~~~~~~~v~~-------------L--l~  243 (285)
T 3d9h_A          197 ACENQQRACVKKLLESGAD-----------------VN-QGKGQDSPLHAVVRTASEELACL-------------L--MD  243 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-----------------TT-CCBTTBCHHHHHHHTTCHHHHHH-------------H--HH
T ss_pred             HHHcCcHHHHHHHHHCCCC-----------------CC-CCCCCCCHHHHHHHcCCHHHHHH-------------H--HH
Confidence            9999999977776666443                 45 48999999999999999877531             1  11


Q ss_pred             ccCCccccccccCCCCCccccccc
Q 039657          308 KSMPRHFFTRFNDNGKTPKEVFTE  331 (507)
Q Consensus       308 ~~~~~~~~~~~N~~G~Tpldl~~~  331 (507)
                         .+.+.+.+|++|+||++++..
T Consensus       244 ---~gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          244 ---FGADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             ---TTCCTTCCCTTSCCGGGGSCT
T ss_pred             ---CCCCCCCcCCCCCCHHHHhcC
Confidence               244678999999999999973

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.90  E-value=1.4e-23  Score=199.32  Aligned_cols=134  Identities=19%  Similarity=0.214  Sum_probs=113.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhC--CcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSY--PAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~--~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      +..|.||||+|+..|+.++++.|++.+  +++ +..|.+|+||||+|+..++              +.+|.+|+||||+|
T Consensus        69 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  147 (228)
T 2dzn_A           69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA  147 (228)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            567999999999999999999999998  776 8889999999999999887              67899999999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhc
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKK  308 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~  308 (507)
                      +..|+.+++++|++.++                ..+|.+|..|+||||+|+..|+.++++.               .+++
T Consensus       148 ~~~~~~~~v~~Ll~~g~----------------~~~~~~d~~g~t~L~~A~~~~~~~~v~~---------------Ll~~  196 (228)
T 2dzn_A          148 ASVGSLKLIELLCGLGK----------------SAVNWQDKQGWTPLFHALAEGHGDAAVL---------------LVEK  196 (228)
T ss_dssp             HHTTCHHHHHHHHTTTC----------------CCSCCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHH
T ss_pred             HHcCCHHHHHHHHhcCc----------------ccccCcCCCCCCHHHHHHHcCCHHHHHH---------------HHHh
Confidence            99999997777776653                3578999999999999999999876531               1101


Q ss_pred             cCCccccccccCCCCCcccccccc
Q 039657          309 SMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       309 ~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                        .+.+.+.+|++|+||++++.+.
T Consensus       197 --~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          197 --YGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             --HCCCSCCBCTTSCBGGGGCSST
T ss_pred             --cCCCCCccCCCCCcHHHHHHHH
Confidence              2346688999999999999654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.90  E-value=5.1e-24  Score=203.02  Aligned_cols=135  Identities=22%  Similarity=0.156  Sum_probs=113.5

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      .|..|+||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|..|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  147 (231)
T 3aji_A           69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA  147 (231)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            3667999999999999999999999999997 8899999999999999887              678899999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhcc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKS  309 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~  309 (507)
                      ..|+.+++++|++.+                 ..++.+|..|+||||+|+..|+.++++.             +  ++  
T Consensus       148 ~~~~~~~v~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------L--l~--  193 (231)
T 3aji_A          148 AKGNLKMVHILLFYK-----------------ASTNIQDTEGNTPLHLACDEERVEEAKF-------------L--VT--  193 (231)
T ss_dssp             HHTCHHHHHHHHHTT-----------------CCSCCCCTTSCCHHHHHHHTTCHHHHHH-------------H--HH--
T ss_pred             HcCCHHHHHHHHhcC-----------------CCccccCCCCCCHHHHHHHCCCHHHHHH-------------H--HH--
Confidence            999999666666553                 4578999999999999999999776531             1  11  


Q ss_pred             CCccccccccCCCCCcccccccccc
Q 039657          310 MPRHFFTRFNDNGKTPKEVFTETHK  334 (507)
Q Consensus       310 ~~~~~~~~~N~~G~Tpldl~~~~~~  334 (507)
                       .+.+.+.+|++|+||++++.+.+.
T Consensus       194 -~ga~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          194 -QGASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             -TTCCSCCCCTTSCCHHHHSCHHHH
T ss_pred             -CCCCCCCCCCCCCCHHHHHHhhHH
Confidence             134567899999999999976543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=1.2e-23  Score=201.74  Aligned_cols=136  Identities=14%  Similarity=0.098  Sum_probs=107.5

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCc-----ccccccCCCCcHHHHHHHcCC--------------cccCC-CCCC
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPA-----VIQELNTSEKNLVLLTFEKKN--------------AQQSG-RKET  223 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~-----~~~~~d~~G~tpLh~A~~~~~--------------~~~d~-~g~T  223 (507)
                      +|..|.||||+|+..|+.++++.|++.+++     .++..|..|+||||+|+..++              +.+|. .|+|
T Consensus        74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  153 (236)
T 1ikn_D           74 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT  153 (236)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Confidence            366799999999999999999999999864     357789999999999999987              56776 9999


Q ss_pred             ccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHh
Q 039657          224 PMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWY  303 (507)
Q Consensus       224 pLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~  303 (507)
                      |||+|+..|+.++|++|+++             |    +.++.+|..|+||||+|+..|+.+++++              
T Consensus       154 pL~~A~~~~~~~~v~~Ll~~-------------g----a~~~~~~~~g~tpl~~A~~~~~~~~~~~--------------  202 (236)
T 1ikn_D          154 ALHLAVDLQNPDLVSLLLKC-------------G----ADVNRVTYQGYSPYQLTWGRPSTRIQQQ--------------  202 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHTT-------------T----CCSCCCCTTCCCGGGGCTTSSCHHHHHH--------------
T ss_pred             HHHHHHHcCCHHHHHHHHHc-------------C----CCCCcccCCCCCHHHHHHccCchHHHHH--------------
Confidence            99999999999966666655             3    4578999999999999999999877532              


Q ss_pred             hhhhccCCccccccccCCCCCcccccccc
Q 039657          304 QFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       304 ~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                        +...-........|.+|+||.|...+.
T Consensus       203 --Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          203 --LGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             --HHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             --HHHcchhhhhcCCccchHHHHhhhccc
Confidence              111111223457899999999876543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=2.4e-23  Score=214.34  Aligned_cols=133  Identities=14%  Similarity=0.169  Sum_probs=103.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhC---CcccccccCCCCcHHHHHHHcC---C--------------c--------c
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSY---PAVIQELNTSEKNLVLLTFEKK---N--------------A--------Q  216 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~---~~~~~~~d~~G~tpLh~A~~~~---~--------------~--------~  216 (507)
                      |..|.||||+|+..|+.++++.|++.+   .++ +..|.+|+||||+|+..+   +              +        .
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  274 (373)
T 2fo1_E          196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS  274 (373)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCc
Confidence            556888888888888888888888876   454 777888888888888876   2              1        2


Q ss_pred             cCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhh
Q 039657          217 QSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQM  296 (507)
Q Consensus       217 ~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~  296 (507)
                      +|..|+||||+|+.+|+.++|++|++.++                ..+|.+|.+|+||||+|+..|+.+++++       
T Consensus       275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----------------~~~n~~d~~g~TpL~~A~~~g~~~iv~~-------  331 (373)
T 2fo1_E          275 EKYKGRTALHYAAQVSNMPIVKYLVGEKG----------------SNKDKQDEDGKTPIMLAAQEGRIEVVMY-------  331 (373)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHHSC----------------CCTTCCCTTCCCHHHHHHHHTCHHHHHH-------
T ss_pred             ccccCCCHHHHHHHhCCHHHHHHHHHhcC----------------CCccCcCCCCCCHHHHHHHcCCHHHHHH-------
Confidence            56688888888888888886666665532                4679999999999999999999887632       


Q ss_pred             HHHHHHhhhhhccCCccccccccCCCCCcccccccc
Q 039657          297 QWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       297 ~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                              .++   .+.+++.+|.+|+||++++...
T Consensus       332 --------Ll~---~gad~~~~d~~g~t~l~~A~~~  356 (373)
T 2fo1_E          332 --------LIQ---QGASVEAVDATDHTARQLAQAN  356 (373)
T ss_dssp             --------HHH---TTCCSSCCCSSSCCHHHHHHHT
T ss_pred             --------HHH---cCCCccCCCCCCCCHHHHHHHc
Confidence                    111   2446688999999999998765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=2.9e-23  Score=202.77  Aligned_cols=147  Identities=18%  Similarity=0.135  Sum_probs=118.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------ccc----------CCC
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQ----------SGR  220 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~----------d~~  220 (507)
                      |..|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..++              +.+          +..
T Consensus        69 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~  147 (285)
T 1wdy_A           69 KKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG  147 (285)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccC
Confidence            567899999999999999999999999887 8889999999999998887              222          778


Q ss_pred             CCCccchhhhcCCHHHHHHHHhh-CCc------------------------hHHHHHHHhcccccccccccccCCCCcHH
Q 039657          221 KETPMLIAARMGVTEMVEQILDT-FPA------------------------NQYLQALLNRKILGESIFRQVDSQGNSAL  275 (507)
Q Consensus       221 g~TpLH~Aa~~g~~~iv~~Ll~~-~~~------------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpL  275 (507)
                      |.||||+|+..|+.+++++|++. +.+                        ..++++|++.+    ..+|.+|..|+|||
T Consensus       148 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g----~~~~~~~~~g~t~L  223 (285)
T 1wdy_A          148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG----ADVNVRGERGKTPL  223 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT----CCSSCCCTTSCCHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcC----CCCCCcCCCCCcHH
Confidence            99999999999999999999987 333                        12577888877    77899999999999


Q ss_pred             HHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          276 HLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       276 HlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      |+|+..|+.++++.             +  ++  ..+.+.+.+|.+|+||++++.+..
T Consensus       224 ~~A~~~~~~~~v~~-------------L--l~--~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          224 ILAVEKKHLGLVQR-------------L--LE--QEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             HHHHHTTCHHHHHH-------------H--HH--SSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHH-------------H--Hh--ccCCCccccCCCCCcHHHHHHHcC
Confidence            99999998776531             1  11  124456789999999999987653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.89  E-value=5.1e-24  Score=211.07  Aligned_cols=136  Identities=18%  Similarity=0.187  Sum_probs=111.3

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC-----------------------------
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN-----------------------------  214 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~-----------------------------  214 (507)
                      .|..|+||||+|+..|+.++|+.|++.++++ +..|.+|+||||+|+..++                             
T Consensus       102 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  180 (299)
T 1s70_B          102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD  180 (299)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHH
Confidence            3667999999999999999999999999997 8889999999999875543                             


Q ss_pred             ------------cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcC
Q 039657          215 ------------AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG  282 (507)
Q Consensus       215 ------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g  282 (507)
                                  ...+..|.||||+|+.+|+.++|++|++++                 ..+|.+|.+|+||||+|+..|
T Consensus       181 ~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----------------~d~~~~d~~g~tpL~~A~~~~  243 (299)
T 1s70_B          181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-----------------YDVNIKDYDGWTPLHAAAHWG  243 (299)
T ss_dssp             HHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-----------------CCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-----------------CCCCCcCCCCCcHHHHHHhcC
Confidence                        125678999999999999999666666553                 457999999999999999999


Q ss_pred             CCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccccc
Q 039657          283 DHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKD  335 (507)
Q Consensus       283 ~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~~~  335 (507)
                      +.+++++               .++   .+.+++.+|+.|+||++++.+...+
T Consensus       244 ~~~~v~~---------------Ll~---~gad~~~~d~~g~t~l~~A~~~~~~  278 (299)
T 1s70_B          244 KEEACRI---------------LVE---NLCDMEAVNKVGQTAFDVADEDILG  278 (299)
T ss_dssp             CHHHHHH---------------HHH---TTCCTTCCCTTSCCTTTSCCSGGGH
T ss_pred             CHHHHHH---------------HHH---cCCCCCCcCCCCCCHHHHHHHHHHH
Confidence            9887632               111   2345678999999999999776443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.89  E-value=2.9e-23  Score=196.74  Aligned_cols=134  Identities=9%  Similarity=0.056  Sum_probs=106.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      |..|.||||+|+..|+.++++.|++.++..++..|.+|+||||+|+..++              +.+|.+|+||||+|+.
T Consensus        55 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  134 (223)
T 2f8y_A           55 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA  134 (223)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHH
Confidence            56788999999999999999999998885558888999999999998887              6678889999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccC
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSM  310 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~  310 (507)
                      .|+.+++++|++++                 ..++.+|..|+||||+|+..|+.++++.               .++   
T Consensus       135 ~~~~~~v~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~---  179 (223)
T 2f8y_A          135 VNNVDAAVVLLKNG-----------------ANKDMQNNREETPLFLAAREGSYETAKV---------------LLD---  179 (223)
T ss_dssp             TTCHHHHHHHHHTT-----------------CCTTCCCTTCCCHHHHHHHHTCHHHHHH---------------HHH---
T ss_pred             cCCHHHHHHHHHcC-----------------CCCCCcCCCCcCHHHHHHHcCCHHHHHH---------------HHH---
Confidence            99999666666553                 4568889999999999999998776531               011   


Q ss_pred             CccccccccCCCCCccccccccc
Q 039657          311 PRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       311 ~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      ...+.+.+|..|+||++++.+..
T Consensus       180 ~ga~~~~~~~~g~t~l~~A~~~~  202 (223)
T 2f8y_A          180 HFANRDITDHMDRLPRDIAQERM  202 (223)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             cCCCCccccccCCCHHHHHHHhc
Confidence            12345678889999999887653

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.89  E-value=4.4e-23  Score=189.12  Aligned_cols=109  Identities=19%  Similarity=0.231  Sum_probs=98.1

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      |.+|..|+||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..|+              +.+|.+|+||||+
T Consensus        31 n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~  109 (169)
T 4gpm_A           31 NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHH  109 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence            344778999999999999999999999999997 8999999999999999988              7899999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      ||.+|+.++|++|++++                 +.++.+|.+|+||||+|++.|+.++++
T Consensus       110 A~~~g~~~~v~~Ll~~g-----------------ad~~~~d~~G~TpL~~A~~~g~~~iv~  153 (169)
T 4gpm_A          110 AAENGHKEVVKLLISKG-----------------ADVNTSDSDGRTPLDLAREHGNEEVVK  153 (169)
T ss_dssp             HHHTTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcC-----------------CCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999666666553                 457999999999999999999988764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.89  E-value=1.7e-23  Score=213.96  Aligned_cols=206  Identities=14%  Similarity=0.089  Sum_probs=151.8

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      .+..|.+|.||||++|+       ..++..++.++-+...++..+...  ..|.                          
T Consensus        13 ~~~~d~~g~t~L~~Aa~-------~g~~~~v~~Ll~~g~~~~~~d~~g--~t~L--------------------------   57 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAAR-------KGQTDEVRRLIETGVSPTIQNRFG--CTAL--------------------------   57 (364)
T ss_dssp             ---CCHHHHHHHHHHHH-------HTCHHHHHHHHHTTCCTTCCCTTC--CCHH--------------------------
T ss_pred             ccccCCCCCCHHHHHHH-------cCCHHHHHHHHHcCCCccccCCCC--CcHH--------------------------
Confidence            46789999999999994       456777888887766554333111  1111                          


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCc
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSA  161 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~  161 (507)
                         .++....|.   ++++.|++++...    +                                               
T Consensus        58 ---~~A~~~g~~---~~v~~Ll~~g~~~----~-----------------------------------------------   80 (364)
T 3ljn_A           58 ---HLACKFGCV---DTAKYLASVGEVH----S-----------------------------------------------   80 (364)
T ss_dssp             ---HHHHHHCCH---HHHHHHHHHCCCC----C-----------------------------------------------
T ss_pred             ---HHHHHcCCH---HHHHHHHHCCCCc----c-----------------------------------------------
Confidence               123333443   8899999996521    0                                               


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhh----CCccccc-----------------ccCCCCcHHHHHHHcC--C----
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKS----YPAVIQE-----------------LNTSEKNLVLLTFEKK--N----  214 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~----~~~~~~~-----------------~d~~G~tpLh~A~~~~--~----  214 (507)
                         +..|.||||+|+..|+.++|+.|++.    +.+. +.                 +|.+|+||||+|+..|  +    
T Consensus        81 ---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v  156 (364)
T 3ljn_A           81 ---LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMI  156 (364)
T ss_dssp             ---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHH
T ss_pred             ---ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHH
Confidence               22589999999999999999999998    6665 44                 8889999999999999  5    


Q ss_pred             ----------cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCC
Q 039657          215 ----------AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDH  284 (507)
Q Consensus       215 ----------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~  284 (507)
                                +.+|.+|+||||+|+.+|+.++|++|++++++            .....+|.+|..|+||||+|+..|+.
T Consensus       157 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------~~~~~~~~~~~~g~t~L~~A~~~g~~  224 (364)
T 3ljn_A          157 KILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPS------------KSSLRLDYANKQGNSHLHWAILINWE  224 (364)
T ss_dssp             HHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSC------------SSSCCTTCCCTTCCCTTHHHHTTTCH
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccc------------cccccccccCCCCCcHHHHHHHcCCH
Confidence                      67889999999999999999977777777554            11234889999999999999999998


Q ss_pred             cccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          285 RPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       285 ~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +++++               .++   ...+++.+|.+|+||++++....
T Consensus       225 ~~v~~---------------Ll~---~gad~~~~d~~g~tpL~~A~~~g  255 (364)
T 3ljn_A          225 DVAMR---------------FVE---MGIDVNMEDNEHTVPLYLSVRAA  255 (364)
T ss_dssp             HHHHH---------------HHT---TTCCTTCCCTTSCCHHHHHHHTC
T ss_pred             HHHHH---------------HHH---cCCCCCCCCCCCCCHHHHHHHhC
Confidence            77632               111   24466789999999999987653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.89  E-value=1.8e-23  Score=211.64  Aligned_cols=143  Identities=15%  Similarity=0.133  Sum_probs=119.1

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC------------------cccCCCCCCcc
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN------------------AQQSGRKETPM  225 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~------------------~~~d~~g~TpL  225 (507)
                      +|..|+||||+||..|+.++|+.|++.++++ +.+|.+|+||||+|+..|+                  +.+|.+|+|||
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpL  205 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL  205 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHH
Confidence            4778999999999999999999999999998 8999999999999999753                  67899999999


Q ss_pred             chhhh----cCCHHHHHHHHhhCC--------------------c--------------hHHHHHHHhcccccccccccc
Q 039657          226 LIAAR----MGVTEMVEQILDTFP--------------------A--------------NQYLQALLNRKILGESIFRQV  267 (507)
Q Consensus       226 H~Aa~----~g~~~iv~~Ll~~~~--------------------~--------------~~vv~~Ll~~~~~~~~~in~~  267 (507)
                      |+|+.    .|+.++|+.|++...                    +              ...+++|++.      .+|.+
T Consensus       206 h~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~------~~n~~  279 (327)
T 1sw6_A          206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN------MLNAQ  279 (327)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH------TTTCC
T ss_pred             HHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHh------CCCCC
Confidence            99999    999999999998732                    1              0014555544      37999


Q ss_pred             cCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccc
Q 039657          268 DSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTE  331 (507)
Q Consensus       268 D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~  331 (507)
                      |.+|+||||+|+..|+.+++++               .++   .+.+++.+|++|+||++++..
T Consensus       280 d~~G~TpLh~A~~~g~~~~v~~---------------Ll~---~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          280 DSNGDTCLNIAARLGNISIVDA---------------LLD---YGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHH---------------HHH---TTCCTTCCCTTSCCGGGGTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHH---------------HHH---cCCCCcccCCCCCCHHHHHHh
Confidence            9999999999999999887642               111   244678999999999999864

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.88  E-value=5e-23  Score=191.18  Aligned_cols=106  Identities=19%  Similarity=0.220  Sum_probs=93.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      |..|+||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..++              +.+|.+|+||||+|+.
T Consensus        65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  143 (192)
T 2rfm_A           65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK  143 (192)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred             cccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            567999999999999999999999999987 8889999999999998887              6789999999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      .|+.++|++|++++                 +.++.+|..|+||||+|+..|+.++++
T Consensus       144 ~~~~~~v~~Ll~~g-----------------a~~~~~~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          144 YGRSEIVKKLLELG-----------------ADISARDLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HTCHHHHHHHHHTT-----------------CCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHCC-----------------CCCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence            99999666666553                 457899999999999999999988763

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.88  E-value=1.1e-22  Score=205.64  Aligned_cols=146  Identities=15%  Similarity=0.087  Sum_probs=117.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhhCCcc--------------------------------cccccCCCCcHHHHHHHcC
Q 039657          166 EKMDNKILLAAKIGVTEMVDRFLKSYPAV--------------------------------IQELNTSEKNLVLLTFEKK  213 (507)
Q Consensus       166 ~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~--------------------------------~~~~d~~G~tpLh~A~~~~  213 (507)
                      +.|+||||+||..|+.++|+.||++++++                                ++.+|..|+||||+|+..+
T Consensus        57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~  136 (337)
T 4g8k_A           57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG  136 (337)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcC
Confidence            35899999999999999999999987654                                2567888999999999888


Q ss_pred             C------------------------cccCCCCCCccchhhhcCCHHHHHHHHhh-CCc----------------------
Q 039657          214 N------------------------AQQSGRKETPMLIAARMGVTEMVEQILDT-FPA----------------------  246 (507)
Q Consensus       214 ~------------------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~-~~~----------------------  246 (507)
                      +                        ...+..|.||||+|+.+|+.++|++||++ +.+                      
T Consensus       137 ~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~  216 (337)
T 4g8k_A          137 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS  216 (337)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTT
T ss_pred             cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcc
Confidence            6                        23567799999999999999999999975 333                      


Q ss_pred             --hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCC
Q 039657          247 --NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKT  324 (507)
Q Consensus       247 --~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~T  324 (507)
                        ..++++|++.|    +.+|.+|.+|+||||+|+..|+.++++.                + ......+++.+|++|+|
T Consensus       217 ~~~~i~~lLl~~g----ad~n~~d~~g~t~L~~a~~~~~~~~v~~----------------L-l~~~~~~vn~~d~~G~T  275 (337)
T 4g8k_A          217 DVEAITHLLLDHG----ADVNVRGERGKTPLILAVEKKHLGLVQR----------------L-LEQEHIEINDTDSDGKT  275 (337)
T ss_dssp             THHHHHHHHHHTT----CCTTCCCGGGCCHHHHHHHTTCHHHHHH----------------H-HTSTTCCTTCBCTTSCB
T ss_pred             cHHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHhhhhHHHHH----------------H-HHhcCCcccCcCCCCCC
Confidence              13578888888    7899999999999999999998776521                0 01134467899999999


Q ss_pred             cccccccc
Q 039657          325 PKEVFTET  332 (507)
Q Consensus       325 pldl~~~~  332 (507)
                      |++++.+.
T Consensus       276 pL~~A~~~  283 (337)
T 4g8k_A          276 ALLLAVEL  283 (337)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99998655

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.88  E-value=2e-22  Score=195.69  Aligned_cols=108  Identities=23%  Similarity=0.295  Sum_probs=96.8

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      ..+..|.||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|
T Consensus       119 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A  197 (253)
T 1yyh_A          119 ARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA  197 (253)
T ss_dssp             CCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            34667999999999999999999999999997 8999999999999999887              68899999999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +.+|+.++|++|+++++                 .++.+|..|+||||+|++.|+.+++.
T Consensus       198 ~~~~~~~~v~~Ll~~ga-----------------~~~~~d~~g~tpl~~A~~~g~~~i~~  240 (253)
T 1yyh_A          198 AREGSYETAKVLLDHFA-----------------NRDITDHMDRLPRDIAQERMHHDIVR  240 (253)
T ss_dssp             HHHTCHHHHHHHHHTTC-----------------CTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHCCCHHHHHHHHHcCC-----------------CccccccCCCCHHHHHHHcCCHHHHH
Confidence            99999996666666544                 57899999999999999999988763

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.87  E-value=1.2e-21  Score=186.76  Aligned_cols=116  Identities=16%  Similarity=0.024  Sum_probs=94.0

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccC-------------CCCcHHHHHHHcCC--------------c
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNT-------------SEKNLVLLTFEKKN--------------A  215 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~-------------~G~tpLh~A~~~~~--------------~  215 (507)
                      ..|..|.||||+|+..|+.++++.|++.++++ +..+.             +|+||||+|+..++              +
T Consensus        70 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  148 (232)
T 2rfa_A           70 SELYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR  148 (232)
T ss_dssp             STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             ccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            34668999999999999999999999999987 55554             79999999999987              6


Q ss_pred             ccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccc--cccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          216 QQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKIL--GESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       216 ~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~--~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      .+|.+|+||||+|+.+|+.++++.         ++++|++.+..  .....+.+|..|+||||+|+..|+.++++
T Consensus       149 ~~d~~g~t~L~~A~~~~~~~~~~~---------i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~  214 (232)
T 2rfa_A          149 AQDSLGNTVLHILILQPNKTFACQ---------MYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ  214 (232)
T ss_dssp             CCCTTSCCHHHHHHTCSCHHHHHH---------HHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCChHHHHH---------HHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHH
Confidence            789999999999999999997732         22344444310  01233789999999999999999988764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.87  E-value=1.6e-22  Score=185.36  Aligned_cols=128  Identities=20%  Similarity=0.278  Sum_probs=110.1

Q ss_pred             hHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCCHH
Q 039657          170 NKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGVTE  235 (507)
Q Consensus       170 TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~~~  235 (507)
                      ++|+.||+.|+.++|+.||+.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|+.+|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            5799999999999999999999997 8999999999999999987              788999999999999999999


Q ss_pred             HHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCcccc
Q 039657          236 MVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFF  315 (507)
Q Consensus       236 iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~  315 (507)
                      +|++|++++                 +.+|.+|.+|+||||+|+..|+.+++++               .++   ...++
T Consensus        85 ~v~~Ll~~g-----------------advn~~d~~G~TpLh~A~~~g~~~~v~~---------------Ll~---~gad~  129 (169)
T 4gpm_A           85 VVKLLISKG-----------------ADVNAKDSDGRTPLHHAAENGHKEVVKL---------------LIS---KGADV  129 (169)
T ss_dssp             HHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHH---TTCCT
T ss_pred             HHHHHHHCc-----------------CCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------HHH---cCCCc
Confidence            666666553                 4579999999999999999999887642               111   23456


Q ss_pred             ccccCCCCCccccccccc
Q 039657          316 TRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       316 ~~~N~~G~Tpldl~~~~~  333 (507)
                      +.+|++|+||++++....
T Consensus       130 ~~~d~~G~TpL~~A~~~g  147 (169)
T 4gpm_A          130 NTSDSDGRTPLDLAREHG  147 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTT
T ss_pred             cccCCCCCCHHHHHHHcC
Confidence            789999999999987653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.87  E-value=5.7e-22  Score=188.84  Aligned_cols=132  Identities=16%  Similarity=0.125  Sum_probs=102.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhc
Q 039657          166 EKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARM  231 (507)
Q Consensus       166 ~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~  231 (507)
                      ..|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..++              +.+|.+|.||||+|+..
T Consensus        74 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~  152 (240)
T 3eu9_A           74 DLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR  152 (240)
T ss_dssp             TTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Confidence            35889999999999999999999888887 7788888999999888877              56788888999998866


Q ss_pred             CC-HHHHHHHHhhCCchHHHHHHHhcccccccccccccC-CCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhcc
Q 039657          232 GV-TEMVEQILDTFPANQYLQALLNRKILGESIFRQVDS-QGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKS  309 (507)
Q Consensus       232 g~-~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~-~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~  309 (507)
                      |+ .+++++|++             .+    ..++.+|. .|+||||+|+..|+.++++.             +  ++. 
T Consensus       153 ~~~~~~~~~L~~-------------~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------L--l~~-  199 (240)
T 3eu9_A          153 THSVDPTRLLLT-------------FN----VSVNLGDKYHKNTALHWAVLAGNTTVISL-------------L--LEA-  199 (240)
T ss_dssp             CCSSTTHHHHHH-------------TT----CCTTCCCTTTCCCHHHHHHHHTCHHHHHH-------------H--HHH-
T ss_pred             CChHHHHHHHHh-------------cC----CCcchhhccCCCcHHHHHHHcCCHHHHHH-------------H--HHc-
Confidence            66 674444444             44    45788887 99999999999999776531             1  111 


Q ss_pred             CCccccccccCCCCCccccccccc
Q 039657          310 MPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       310 ~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                        +.+.+.+|.+|+||++++.+..
T Consensus       200 --g~~~~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          200 --GANVDAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             --TCCTTCBCTTSCBHHHHHHHTT
T ss_pred             --CCCCCCcCCCCCCHHHHHHHcC
Confidence              3456789999999999987663

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.86  E-value=3.1e-22  Score=191.49  Aligned_cols=110  Identities=11%  Similarity=0.081  Sum_probs=96.7

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHhhhCCccccccc-CCCCcHHHHHHHcCC--------------cccCCCCCCcc
Q 039657          161 AQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELN-TSEKNLVLLTFEKKN--------------AQQSGRKETPM  225 (507)
Q Consensus       161 ~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d-~~G~tpLh~A~~~~~--------------~~~d~~g~TpL  225 (507)
                      .+..|..|.||||+|+..|+.++++.|++.++++ +..| ..|+||||+|+..++              +.+|.+|+|||
T Consensus       109 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  187 (241)
T 1k1a_A          109 LEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL  187 (241)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            3556788999999999999999999999999998 6666 899999999999987              67899999999


Q ss_pred             chhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          226 LIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       226 H~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      |+|+.+|+.+++++|++++                 +.++.+|..|+||||+|+..|+.++++
T Consensus       188 ~~A~~~~~~~~v~~Ll~~g-----------------a~~~~~~~~g~tpl~~A~~~~~~~i~~  233 (241)
T 1k1a_A          188 HSASGRGLLPLVRTLVRSG-----------------ADSSLKNCHNDTPLMVARSRRVIDILR  233 (241)
T ss_dssp             HHHHHHTCHHHHHHHHHTT-----------------CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcC-----------------CCCCCcCCCCCCHHHHHHhcCcHHHHh
Confidence            9999999999666666553                 457899999999999999999877764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.86  E-value=3.7e-22  Score=196.61  Aligned_cols=101  Identities=14%  Similarity=0.109  Sum_probs=91.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      +..|.||+|+|+..|+.++++.|++.++++ +.+|.+|+||||+||..|+              +.+|.+|+||||+||.
T Consensus       116 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~  194 (269)
T 4b93_B          116 NADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI  194 (269)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             CCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHH
Confidence            567999999999999999999999999997 8999999999999999987              7889999999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCC
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD  283 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~  283 (507)
                      +|+.++|++|++++                 +++|.+|.+|+||||+|+++++
T Consensus       195 ~g~~~~v~~Ll~~G-----------------ad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          195 EKHVFVVELLLLHG-----------------ASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             TTCHHHHHHHHHTT-----------------CCSCCCCTTSCCSGGGSCTTCH
T ss_pred             cCCHHHHHHHHHCC-----------------CCCCCcCCCCCCHHHHHHhCCc
Confidence            99999666666553                 4579999999999999998775

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.86  E-value=1.4e-21  Score=186.90  Aligned_cols=104  Identities=14%  Similarity=0.078  Sum_probs=92.9

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      .+..|.||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|..|.||||+|+
T Consensus       107 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  185 (237)
T 3b7b_A          107 QDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA  185 (237)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            3667999999999999999999999999997 8899999999999999987              678899999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHR  285 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~  285 (507)
                      .+|+.+++++|++++                 +.++.+|.+|+||||+|+..|+..
T Consensus       186 ~~~~~~~v~~Ll~~g-----------------ad~~~~d~~g~t~l~~A~~~~~~~  224 (237)
T 3b7b_A          186 RENRYDCVVLFLSRD-----------------SDVTLKNKEGETPLQCASLNSQVW  224 (237)
T ss_dssp             HTTCHHHHHHHHTTT-----------------CCTTCCCTTSCCHHHHSCTTCHHH
T ss_pred             HhCCHhHHHHHHHcC-----------------CCCCccCCCCCCHHHHHHHHHHHH
Confidence            999999666666553                 457899999999999999998754

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.86  E-value=8.8e-22  Score=199.01  Aligned_cols=214  Identities=17%  Similarity=0.193  Sum_probs=141.3

Q ss_pred             cccccC-CCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcC---
Q 039657            2 VNSVNE-NGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGL---   77 (507)
Q Consensus         2 v~~~D~-~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---   77 (507)
                      ||.+|. .|+||||+||+       ..+...++.||-+...+...+....  .|..+.........  ...+...+.   
T Consensus        51 vn~~~~~~g~TpLh~A~~-------~g~~~iv~~Ll~~ga~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~  119 (337)
T 4g8k_A           51 VNFQEEEGGWTPLHNAVQ-------MSREDIVELLLRHGADPVLRKKNGA--TPFILAAIAGSVKL--LKLFLSKGADVN  119 (337)
T ss_dssp             TTCCCTTTCCCHHHHHHH-------TTCHHHHHHHHHTTCCTTCCCTTCC--CHHHHHHHHTCHHH--HHHHHTTTCCTT
T ss_pred             CCccCCCCCcCHHHHHHH-------cCCHHHHHHHHHcCCchhhhccCCC--chhHHHHhcccchh--hHHhhhccchhh
Confidence            466665 59999999995       4567788888888776654432211  12111111111110  011111100   


Q ss_pred             --Cch-hhhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccc
Q 039657           78 --GIW-RINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHK  154 (507)
Q Consensus        78 --g~~-~i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~  154 (507)
                        ... ...-.++....+   .++++.|+++++........                                       
T Consensus       120 ~~d~~g~t~l~~A~~~~~---~~~~~~ll~~ga~~~~~~~~---------------------------------------  157 (337)
T 4g8k_A          120 ECDFYGFTAFMEAAVYGK---VKALKFLYKRGANVNLRRKT---------------------------------------  157 (337)
T ss_dssp             CBCTTCCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCC---------------------------------------
T ss_pred             hhccCCCCHHHHHHHcCc---HHHHHHHHHcCCCcchhhcc---------------------------------------
Confidence              000 112234444444   37788888887655332211                                       


Q ss_pred             cccCCCcccCCCCCChHHHHHHHcCCHHHHHHHhhh-CCcccccccCCCCcHHHHHHHcCC------------------c
Q 039657          155 KIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKS-YPAVIQELNTSEKNLVLLTFEKKN------------------A  215 (507)
Q Consensus       155 ~~~~~~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~d~~G~tpLh~A~~~~~------------------~  215 (507)
                         ....+..+..|.||||+||..|+.++|+.||+. ++++ +.+|..|+||+|.++..+.                  +
T Consensus       158 ---~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n  233 (337)
T 4g8k_A          158 ---KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN  233 (337)
T ss_dssp             ---C-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT
T ss_pred             ---ccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCC
Confidence               011133467899999999999999999999975 6776 8999999999998876543                  6


Q ss_pred             ccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          216 QQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       216 ~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      .+|.+|+||||+|+..|+.++|+.|++...                ..+|.+|.+|+||||+|++.|+.++++
T Consensus       234 ~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~----------------~~vn~~d~~G~TpL~~A~~~g~~~iv~  290 (337)
T 4g8k_A          234 VRGERGKTPLILAVEKKHLGLVQRLLEQEH----------------IEINDTDSDGKTALLLAVELKLKKIAE  290 (337)
T ss_dssp             CCCGGGCCHHHHHHHTTCHHHHHHHHTSTT----------------CCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             CcCCCCCCHHHHHHHhhhhHHHHHHHHhcC----------------CcccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            789999999999999999996666665422                568999999999999999999988764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.86  E-value=2.4e-22  Score=199.18  Aligned_cols=174  Identities=12%  Similarity=0.018  Sum_probs=134.0

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      +|.+|.+|.||||++|+       ..+...++.++-+...++..+ +.+   |.                          
T Consensus        24 ~~~~d~~g~t~L~~A~~-------~g~~~~v~~Ll~~g~~~~~~~-g~t---~L--------------------------   66 (285)
T 3kea_A           24 TFKADVHGHSASYYAIA-------DNNVRLVCTLLNAGALKNLLE-NEF---PL--------------------------   66 (285)
T ss_dssp             TTCCCTTSCCHHHHHHH-------TTCHHHHHHHHHTTGGGSCCT-TCC---HH--------------------------
T ss_pred             CCccCCCCCCHHHHHHH-------cCCHHHHHHHHhCCCCCCCCC-CCC---HH--------------------------
Confidence            57899999999999995       445667777777766554332 111   11                          


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCc
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSA  161 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~  161 (507)
                         .++....|   .++++.|++++...                                                    
T Consensus        67 ---~~A~~~g~---~~~v~~Ll~~ga~~----------------------------------------------------   88 (285)
T 3kea_A           67 ---HQAATLED---TKIVKILLFSGLDD----------------------------------------------------   88 (285)
T ss_dssp             ---HHHTTSSS---CHHHHHHHHTTCCT----------------------------------------------------
T ss_pred             ---HHHHHcCC---HHHHHHHHHCCCCC----------------------------------------------------
Confidence               11222233   37888999986433                                                    


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCC-CcHHHHHHHcCC------------cccCC-CCCCccch
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSE-KNLVLLTFEKKN------------AQQSG-RKETPMLI  227 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G-~tpLh~A~~~~~------------~~~d~-~g~TpLH~  227 (507)
                      +.+|..|+||||+|+..|+.++++.|++.++++ +.+|..| +||||+|+..++            +..+. .|+||||+
T Consensus        89 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~  167 (285)
T 3kea_A           89 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHI  167 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHH
T ss_pred             CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHH
Confidence            233667999999999999999999999999997 8899999 799999999987            33344 89999999


Q ss_pred             hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcH-HHHHHhcCCCcccc
Q 039657          228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSA-LHLAAKFGDHRPWL  288 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTp-LHlAa~~g~~~~v~  288 (507)
                      |+.+|+.++|++|+++             +    +.+|.+|..|+|| ||+|+..|+.++++
T Consensus       168 A~~~g~~~~v~~Ll~~-------------g----ad~n~~~~~g~t~~L~~A~~~~~~~~v~  212 (285)
T 3kea_A          168 TIKNGHVDMMILLLDY-------------M----TSTNTNNSLLFIPDIKLAIDNKDIEMLQ  212 (285)
T ss_dssp             HHHTTCHHHHHHHHHH-------------H----HHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred             HHHcChHHHHHHHHHc-------------C----CCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence            9999999966665554             4    5689999999998 99999999987764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.86  E-value=6.1e-22  Score=202.31  Aligned_cols=109  Identities=9%  Similarity=0.057  Sum_probs=97.1

Q ss_pred             ccCCCCCChHHHHHHHcC--CHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC-------------------cccCCC
Q 039657          162 QSGTEKMDNKILLAAKIG--VTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN-------------------AQQSGR  220 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G--~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~-------------------~~~d~~  220 (507)
                      +..|..|.||||+||..|  +.++|+.|++.++++ +.+|.+|+||||+|+..|+                   +.+|.+
T Consensus       132 ~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~  210 (364)
T 3ljn_A          132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ  210 (364)
T ss_dssp             EEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred             ccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence            345778999999999999  999999999999997 8999999999999999987                   357889


Q ss_pred             CCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          221 KETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       221 g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      |+||||+|+.+|+.++|++|++++                 +.+|.+|.+|+||||+|+..|+.++++
T Consensus       211 g~t~L~~A~~~g~~~~v~~Ll~~g-----------------ad~~~~d~~g~tpL~~A~~~g~~~~v~  261 (364)
T 3ljn_A          211 GNSHLHWAILINWEDVAMRFVEMG-----------------IDVNMEDNEHTVPLYLSVRAAMVLLTK  261 (364)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHTTT-----------------CCTTCCCTTSCCHHHHHHHTCCHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC-----------------CCCCCCCCCCCCHHHHHHHhChHHHHH
Confidence            999999999999999666666553                 457999999999999999999988874

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.86  E-value=5.9e-21  Score=186.37  Aligned_cols=107  Identities=19%  Similarity=0.263  Sum_probs=85.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhh-CCcccccccCCCCcHHHHHHHcCC------------------cccCCCCCCcc
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKS-YPAVIQELNTSEKNLVLLTFEKKN------------------AQQSGRKETPM  225 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~d~~G~tpLh~A~~~~~------------------~~~d~~g~TpL  225 (507)
                      +..|.||||+|+..|+.++++.|++. +.++ +.+|..|+||||+|+..++                  +.+|.+|+|||
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L  223 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  223 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            67788888888888888888888877 6665 7788888888888887665                  46778888888


Q ss_pred             chhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          226 LIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       226 H~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      |+|+.+|+.++|++|++.            .+    ..++.+|.+|+||||+|+..|+.++++
T Consensus       224 ~~A~~~~~~~~v~~Ll~~------------~g----~~~~~~~~~g~t~l~~A~~~~~~~i~~  270 (285)
T 1wdy_A          224 ILAVEKKHLGLVQRLLEQ------------EH----IEINDTDSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHS------------SS----CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhc------------cC----CCccccCCCCCcHHHHHHHcCcHHHHH
Confidence            888888888855555552            22    568999999999999999999988764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.85  E-value=9e-22  Score=186.81  Aligned_cols=102  Identities=15%  Similarity=0.053  Sum_probs=90.2

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------cccCCCCCCccch
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------AQQSGRKETPMLI  227 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------~~~d~~g~TpLH~  227 (507)
                      .+|..|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..++               +.+|.+|+||||+
T Consensus       102 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~  180 (228)
T 2dzn_A          102 KITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH  180 (228)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHH
Confidence            34667999999999999999999999999997 8999999999999999887               5689999999999


Q ss_pred             hhhcCCHHHHHHHH-hhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcC
Q 039657          228 AARMGVTEMVEQIL-DTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG  282 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll-~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g  282 (507)
                      |+..|+.++|++|+ +.             |    +.++.+|.+|+||||+|+..+
T Consensus       181 A~~~~~~~~v~~Ll~~~-------------g----a~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          181 ALAEGHGDAAVLLVEKY-------------G----AEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             HHHTTCHHHHHHHHHHH-------------C----CCSCCBCTTSCBGGGGCSSTT
T ss_pred             HHHcCCHHHHHHHHHhc-------------C----CCCCccCCCCCcHHHHHHHHH
Confidence            99999999666666 44             3    467999999999999997654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.85  E-value=3.6e-21  Score=186.72  Aligned_cols=114  Identities=15%  Similarity=0.047  Sum_probs=93.0

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCC-------------CCcHHHHHHHcCC----------------
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTS-------------EKNLVLLTFEKKN----------------  214 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~-------------G~tpLh~A~~~~~----------------  214 (507)
                      .|..|.||||+||..|+.++|+.|++.++++ +.+|..             |+||||+|+..++                
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~  164 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS  164 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence            3567999999999999999999999999997 777776             9999999998875                


Q ss_pred             -cccCCCCCCccchhhh--cCCHH-------HHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCC
Q 039657          215 -AQQSGRKETPMLIAAR--MGVTE-------MVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDH  284 (507)
Q Consensus       215 -~~~d~~g~TpLH~Aa~--~g~~~-------iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~  284 (507)
                       +.+|.+|+||||+|+.  +|+.+       +|++|++++++  +     .   ......+.+|..|+||||+|+..|+.
T Consensus       165 ~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~--~-----~---~~~~~~~~~d~~g~tpL~~A~~~g~~  234 (256)
T 2etb_A          165 LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR--L-----C---PTVQLEEISNHQGLTPLKLAAKEGKI  234 (256)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH--H-----S---TTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC--c-----c---cccccccccCCCCCCHHHHHHHhCCH
Confidence             5689999999999999  88888       66666655333  0     0   00011289999999999999999998


Q ss_pred             cccc
Q 039657          285 RPWL  288 (507)
Q Consensus       285 ~~v~  288 (507)
                      ++++
T Consensus       235 ~~v~  238 (256)
T 2etb_A          235 EIFR  238 (256)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.85  E-value=3.5e-21  Score=174.41  Aligned_cols=108  Identities=19%  Similarity=0.156  Sum_probs=95.1

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      ..|..|.||||+|+..|+.++++.|++.++++ +..|..|+||||+|+..++              +.+|.+|+||||+|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  109 (167)
T 3v31_A           31 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA  109 (167)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHH
Confidence            34667999999999999999999999999887 8889999999999999887              67899999999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +..|+.+++++|++++                 +.++.+|.+|+||||+|+..|+.++++
T Consensus       110 ~~~~~~~~v~~Ll~~g-----------------~~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A          110 VHGNHVKCVKMLLESG-----------------ADPTIETDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             HHTTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHcCCHHHHHHHHHcC-----------------CCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            9999999666666553                 457889999999999999999988753

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.85  E-value=6.4e-21  Score=177.53  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=90.3

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------cccCCCCCCccchh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------AQQSGRKETPMLIA  228 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------~~~d~~g~TpLH~A  228 (507)
                      +|..|.||||+|+..|+.++++.|++.+...++..|..|+||||+|+..++               +.+|.+|+||||+|
T Consensus        68 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  147 (201)
T 3hra_A           68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA  147 (201)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHH
Confidence            356789999999999999999999966554458889999999999998887               56888999999999


Q ss_pred             hhcCC-----HHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          229 ARMGV-----TEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       229 a~~g~-----~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +..|+     .+++++|+++             +    +.++.+|..|+||||+|+..|+.++++
T Consensus       148 ~~~~~~~~~~~~~v~~Ll~~-------------g----a~~~~~~~~g~t~l~~A~~~~~~~~~~  195 (201)
T 3hra_A          148 VGLREGNQLYQDIVKLLMEN-------------G----ADQSIKDNSGRTAMDYANQKGYTEISK  195 (201)
T ss_dssp             HHSSCCSHHHHHHHHHHHHT-------------T----CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHhccchhhHHHHHHHHHHC-------------C----CCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence            99988     8855555554             4    457899999999999999999988753

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.85  E-value=2.2e-21  Score=199.66  Aligned_cols=180  Identities=16%  Similarity=0.174  Sum_probs=135.9

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      +|.+|.+|.||||+++.       ..+...++.|+-+...+...+....        +.+                    
T Consensus       159 vn~~d~~g~TpL~~A~~-------~g~~~iv~~Ll~~ga~~~~~~~~g~--------t~L--------------------  203 (373)
T 2fo1_E          159 VNAMDCDENTPLMLAVL-------ARRRRLVAYLMKAGADPTIYNKSER--------SAL--------------------  203 (373)
T ss_dssp             TTCCCTTSCCHHHHHHH-------HTCHHHHHHHHHTTCCSCCCCTTCC--------CHH--------------------
T ss_pred             CcCCCCCCCCHHHHHHH-------cChHHHHHHHHHCCCCCcccCCCCC--------CHH--------------------
Confidence            57899999999999994       4566778888877766543331111        111                    


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCc
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSA  161 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~  161 (507)
                         .++....|   .++++.|++++... .                                                +.
T Consensus       204 ---~~A~~~g~---~~~v~~Ll~~~~~~-~------------------------------------------------~~  228 (373)
T 2fo1_E          204 ---HQAAANRD---FGMMVYMLNSTKLK-G------------------------------------------------DI  228 (373)
T ss_dssp             ---HHHHHTTC---HHHHHHHTTSHHHH-H------------------------------------------------TT
T ss_pred             ---HHHHHCCC---HHHHHHHHhcCccc-c------------------------------------------------Ch
Confidence               11222233   37888888875210 0                                                11


Q ss_pred             ccCCCCCChHHHHHHHcC---CHHHHHHHhhhCCcccc-------cccCCCCcHHHHHHHcCC---------------cc
Q 039657          162 QSGTEKMDNKILLAAKIG---VTEMVDRFLKSYPAVIQ-------ELNTSEKNLVLLTFEKKN---------------AQ  216 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G---~~~~v~~Ll~~~~~~~~-------~~d~~G~tpLh~A~~~~~---------------~~  216 (507)
                      +..|..|.||||+||..|   +.++++.|++.++++..       ..|..|+||||+|+..|+               +.
T Consensus       229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~  308 (373)
T 2fo1_E          229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK  308 (373)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred             hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence            344678999999999998   89999999999988722       367899999999999887               67


Q ss_pred             cCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          217 QSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       217 ~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +|.+|+||||+|+.+|+.++|++|+++             +    +.++.+|..|+||||+|+..|+.++++
T Consensus       309 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~-------------g----ad~~~~d~~g~t~l~~A~~~g~~~iv~  363 (373)
T 2fo1_E          309 QDEDGKTPIMLAAQEGRIEVVMYLIQQ-------------G----ASVEAVDATDHTARQLAQANNHHNIVD  363 (373)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT-------------T----CCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-------------C----CCccCCCCCCCCHHHHHHHcCCHHHHH
Confidence            899999999999999999966666655             3    457999999999999999999988763

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.85  E-value=7.7e-21  Score=180.96  Aligned_cols=109  Identities=18%  Similarity=0.139  Sum_probs=94.7

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------cccCC-CCCCcc
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------AQQSG-RKETPM  225 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------~~~d~-~g~TpL  225 (507)
                      +..+..|.||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..++               +.++. .|.|||
T Consensus       103 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L  181 (240)
T 3eu9_A          103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL  181 (240)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred             cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHH
Confidence            344678999999999999999999999999987 8899999999999997665               45565 899999


Q ss_pred             chhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          226 LIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       226 H~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      |+|+.+|+.++|++|++++                 ..++.+|..|+||||+|++.|+.++++
T Consensus       182 ~~A~~~~~~~~v~~Ll~~g-----------------~~~~~~~~~g~t~l~~A~~~~~~~~v~  227 (240)
T 3eu9_A          182 HWAVLAGNTTVISLLLEAG-----------------ANVDAQNIKGESALDLAKQRKNVWMIN  227 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHHT-----------------CCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcC-----------------CCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            9999999999776666654                 457899999999999999999988763

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.85  E-value=3e-21  Score=188.79  Aligned_cols=107  Identities=11%  Similarity=-0.006  Sum_probs=79.6

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCccccccc-CCCCcHHHHHHHcCC--------------cccCCCCCCc
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELN-TSEKNLVLLTFEKKN--------------AQQSGRKETP  224 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d-~~G~tpLh~A~~~~~--------------~~~d~~g~Tp  224 (507)
                      ..+.+|..|.||||+|+..|+.++|+.|++.++++ +.+| ..|+||||+|+..++              +.+|..|+||
T Consensus       150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp  228 (282)
T 1oy3_D          150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP  228 (282)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCH
Confidence            45677889999999999999999999999999998 6666 459999999999987              7899999999


Q ss_pred             cchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCC
Q 039657          225 MLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDH  284 (507)
Q Consensus       225 LH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~  284 (507)
                      ||+|+.+|+.++|++|+++             |    +.++.+|.+|.|||++|....+.
T Consensus       229 L~~A~~~~~~~~v~~Ll~~-------------g----a~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          229 LGSALLRPNPILARLLRAH-------------G----APEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HHHHHTSSCHHHHHHHHHT-------------T----CCCCCCC----------------
T ss_pred             HHHHHHcCCcHHHHHHHHc-------------C----CCcCcCCCcccccccccCCcccc
Confidence            9999999999966666655             4    45799999999999999987653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.85  E-value=3.9e-21  Score=178.99  Aligned_cols=137  Identities=11%  Similarity=0.068  Sum_probs=114.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------cccCCCCCCccc
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------AQQSGRKETPML  226 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------~~~d~~g~TpLH  226 (507)
                      +..|..|.||||+||..|+.++++.|++.++++ +.+|..|+||||+|+..++               +.+|..|.||||
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  111 (201)
T 3hra_A           33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALI  111 (201)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHH
Confidence            344678999999999999999999999999997 8899999999999999887               678899999999


Q ss_pred             hhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCC-----CcccccCchhhhhHHHHH
Q 039657          227 IAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD-----HRPWLLPGAALQMQWEIK  301 (507)
Q Consensus       227 ~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~-----~~~v~~~gaal~~~~el~  301 (507)
                      +|+.+|+.+++++|++.++                ..++.+|..|+||||+|+..++     .++++             
T Consensus       112 ~A~~~~~~~~v~~Ll~~g~----------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~-------------  162 (201)
T 3hra_A          112 PAAEKGHIDNVKLLLEDGR----------------EDIDFQNDFGYTALIEAVGLREGNQLYQDIVK-------------  162 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHCC----------------CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH-------------
T ss_pred             HHHHcCCHHHHHHHHHcCC----------------CCcCCCCCCCCCHHHHHHHhccchhhHHHHHH-------------
Confidence            9999999998777777653                3578999999999999999887     23321             


Q ss_pred             HhhhhhccCCccccccccCCCCCccccccccc
Q 039657          302 WYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       302 w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      ++  ++   .+.+.+.+|.+|+||++++....
T Consensus       163 ~L--l~---~ga~~~~~~~~g~t~l~~A~~~~  189 (201)
T 3hra_A          163 LL--ME---NGADQSIKDNSGRTAMDYANQKG  189 (201)
T ss_dssp             HH--HH---TTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HH--HH---CCCCCCccCCCCCCHHHHHHHcC
Confidence            11  11   23456789999999999987653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.84  E-value=2.3e-21  Score=191.30  Aligned_cols=105  Identities=17%  Similarity=0.171  Sum_probs=66.9

Q ss_pred             CCChHHHHHH-----HcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          167 KMDNKILLAA-----KIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       167 ~g~TpLh~Aa-----~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      .|.||||+|+     ..|+.++++.|++.+.+. ...|..|+||||+|+..|+              +.+|.+|+||||+
T Consensus       144 ~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~  222 (276)
T 4hbd_A          144 AGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMC  222 (276)
T ss_dssp             TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Confidence            3444444444     334444444444444332 3344444444444444443              5566677777777


Q ss_pred             hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      |+.+|+.++|++|++.            .+    +++|.+|.+|+||||+|+..|+.++++
T Consensus       223 A~~~g~~~iv~~Ll~~------------~g----ad~~~~d~~g~TpL~~A~~~g~~~iv~  267 (276)
T 4hbd_A          223 ACEHGHKEIAGLLLAV------------PS----CDISLTDRDGSTALMVALDAGQSEIAS  267 (276)
T ss_dssp             HHHHTCHHHHHHHHTS------------TT----CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHCCCHHHHHHHHhc------------CC----CCCcCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999966666651            22    567999999999999999999988764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.84  E-value=3.7e-21  Score=183.47  Aligned_cols=144  Identities=16%  Similarity=0.131  Sum_probs=109.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCccc----ccccCCCCcHHHHHHHcCC--------------ccc------
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVI----QELNTSEKNLVLLTFEKKN--------------AQQ------  217 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~----~~~d~~G~tpLh~A~~~~~--------------~~~------  217 (507)
                      +.+|..|+||||+||..|+.++++.|++.++++.    +.+|.+|+||||+|+..++              +.+      
T Consensus        31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  110 (232)
T 2rfa_A           31 HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF  110 (232)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcce
Confidence            3446789999999999999999999999998863    4567899999999999987              333      


Q ss_pred             -------CCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccC
Q 039657          218 -------SGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLP  290 (507)
Q Consensus       218 -------d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~  290 (507)
                             |.+|+||||+|+.+|+.++|++|++++                 +.+|.+|.+|+||||+|+..|+.+++.  
T Consensus       111 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----------------a~~~~~d~~g~t~L~~A~~~~~~~~~~--  171 (232)
T 2rfa_A          111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-----------------ADIRAQDSLGNTVLHILILQPNKTFAC--  171 (232)
T ss_dssp             SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHTCSCHHHHH--
T ss_pred             eecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-----------------CCCCCCCCCCCCHHHHHHHcCChHHHH--
Confidence                   347999999999999999666666553                 457999999999999999999877541  


Q ss_pred             chhhhhHHHHHHhhhhhccCC---ccccccccCCCCCccccccccc
Q 039657          291 GAALQMQWEIKWYQFVKKSMP---RHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       291 gaal~~~~el~w~~~v~~~~~---~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                             .-++++  ++....   ....+.+|++|+||++++....
T Consensus       172 -------~i~~~L--l~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g  208 (232)
T 2rfa_A          172 -------QMYNLL--LSYDGGDHLKSLELVPNNQGLTPFKLAGVEG  208 (232)
T ss_dssp             -------HHHHHH--HHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             -------HHHHHH--HhcCCchhhhhhhccCCCCCCCHHHHHHHcC
Confidence                   001111  111000   1112588999999999987653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.84  E-value=1.3e-21  Score=181.60  Aligned_cols=137  Identities=12%  Similarity=0.200  Sum_probs=116.4

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccc
Q 039657          161 AQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPML  226 (507)
Q Consensus       161 ~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH  226 (507)
                      .+.+|..|+||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|..|+||||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            3567889999999999999999999999999987 8899999999999999988              678999999999


Q ss_pred             hhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhh
Q 039657          227 IAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFV  306 (507)
Q Consensus       227 ~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v  306 (507)
                      +|+..|+.+++++|++++                 ..++.+|..|+||||+|+..|+.++++.               .+
T Consensus       107 ~A~~~~~~~~v~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll  154 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHG-----------------ANVNDRNLEGETPLIVASKYGRSEIVKK---------------LL  154 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTT-----------------CCSSCCCTTCCCHHHHHHHHTCHHHHHH---------------HH
T ss_pred             HHHHcCCHHHHHHHHHCC-----------------CCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------HH
Confidence            999999999666666553                 4578999999999999999999876531               11


Q ss_pred             hccCCccccccccCCCCCccccccccc
Q 039657          307 KKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       307 ~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +   ...+.+.+|.+|.||++++....
T Consensus       155 ~---~ga~~~~~~~~g~t~l~~A~~~~  178 (192)
T 2rfm_A          155 E---LGADISARDLTGLTAEASARIFG  178 (192)
T ss_dssp             H---TTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             H---CCCCCCCcCCCCCCHHHHHHHhC
Confidence            1   13456789999999999986653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.84  E-value=2e-21  Score=196.57  Aligned_cols=174  Identities=18%  Similarity=0.154  Sum_probs=117.7

Q ss_pred             ccc-ccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCch
Q 039657            2 VNS-VNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIW   80 (507)
Q Consensus         2 v~~-~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (507)
                      +|. +|.+|.||||++|+       ..+...++.||-+...++..+...  ..|.+                        
T Consensus       123 vn~~~d~~g~TpLh~Aa~-------~g~~~~v~~Ll~~Gad~n~~d~~g--~TpLh------------------------  169 (327)
T 1sw6_A          123 LNIPVDEHGNTPLHWLTS-------IANLELVKHLVKHGSNRLYGDNMG--ESCLV------------------------  169 (327)
T ss_dssp             SCSCCSTTCCCHHHHHHH-------TTCHHHHHHHHHTTCCTTBCCTTC--CCHHH------------------------
T ss_pred             cccccCCCCCcHHHHHHH-------cCCHHHHHHHHHcCCCCCCcCCCC--CCHHH------------------------
Confidence            466 89999999999995       446778888888887776443211  12222                        


Q ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCC
Q 039657           81 RINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGS  160 (507)
Q Consensus        81 ~i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~  160 (507)
                           ++....|....++++.|++.+..                                                   +
T Consensus       170 -----~A~~~g~~~~~~~~~~ll~~~~~---------------------------------------------------~  193 (327)
T 1sw6_A          170 -----KAVKSVNNYDSGTFEALLDYLYP---------------------------------------------------C  193 (327)
T ss_dssp             -----HHHHSSHHHHTTCHHHHHHHHGG---------------------------------------------------G
T ss_pred             -----HHHHhcccccHHHHHHHHHhhhc---------------------------------------------------c
Confidence                 22222232223455566666411                                                   0


Q ss_pred             cccCCCCCChHHHHHHH----cCCHHHHHHHhhh--------------------CCcccccccCCCCcHHHHHHH-----
Q 039657          161 AQSGTEKMDNKILLAAK----IGVTEMVDRFLKS--------------------YPAVIQELNTSEKNLVLLTFE-----  211 (507)
Q Consensus       161 ~~~~d~~g~TpLh~Aa~----~G~~~~v~~Ll~~--------------------~~~~~~~~d~~G~tpLh~A~~-----  211 (507)
                      .+.+|..|+||||+||.    .|+.++++.|++.                    +.++ +.+|.+|+||||.|+.     
T Consensus       194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~~~~Ll  272 (327)
T 1sw6_A          194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENLDLKWII  272 (327)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCSHHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHHHHHHHH
Confidence            13346789999999999    9999999999987                    6665 7889999999999873     


Q ss_pred             -cCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcC
Q 039657          212 -KKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG  282 (507)
Q Consensus       212 -~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g  282 (507)
                       .+-+.+|.+|+||||+||.+|+.++|++|++++                 ++++.+|.+|+||||+|++.|
T Consensus       273 ~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G-----------------ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-----------------ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-----------------CCTTCCCTTSCCGGGGTCC--
T ss_pred             HhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----------------CCCcccCCCCCCHHHHHHhcC
Confidence             245889999999999999999999666666553                 457999999999999999865

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.84  E-value=2.2e-21  Score=190.14  Aligned_cols=114  Identities=15%  Similarity=0.055  Sum_probs=91.4

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccC--------------CCCcHHHHHHHcCC---------------
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNT--------------SEKNLVLLTFEKKN---------------  214 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~--------------~G~tpLh~A~~~~~---------------  214 (507)
                      .|..|+||||+||..|+.++|+.|++.++++ +.+|.              .|+||||+|+..++               
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga  175 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA  175 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence            3668999999999999999999999999997 77776              79999999998775               


Q ss_pred             --cccCCCCCCccchhhhcCC---------HHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCC
Q 039657          215 --AQQSGRKETPMLIAARMGV---------TEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD  283 (507)
Q Consensus       215 --~~~d~~g~TpLH~Aa~~g~---------~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~  283 (507)
                        +.+|.+|+||||+|+..|+         .+++++|++++++  +     +   .....++.+|.+|+||||+|+..|+
T Consensus       176 d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~--~-----n---~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK--L-----H---PTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH--H-----C---TTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh--c-----c---cccccccccCCCCCCHHHHHHHhCh
Confidence              4678999999999999998         6755555554332  0     0   0001124699999999999999999


Q ss_pred             Ccccc
Q 039657          284 HRPWL  288 (507)
Q Consensus       284 ~~~v~  288 (507)
                      .++++
T Consensus       246 ~~iv~  250 (273)
T 2pnn_A          246 IGVLA  250 (273)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.84  E-value=5.7e-21  Score=192.43  Aligned_cols=148  Identities=15%  Similarity=0.090  Sum_probs=122.8

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      +.+|..|.||||+||..|+.++|+.|++.++++ +.+|.+|+||||+|+..|+              +.+|.+|+||||+
T Consensus        52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~  130 (351)
T 3utm_A           52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE  130 (351)
T ss_dssp             CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            556788999999999999999999999999997 8899999999999999998              6788999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCc-------------------------------------------------------------
Q 039657          228 AARMGVTEMVEQILDTFPA-------------------------------------------------------------  246 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~-------------------------------------------------------------  246 (507)
                      |+.+|+.++|++|++++++                                                             
T Consensus       131 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  210 (351)
T 3utm_A          131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS  210 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCC
Confidence            9999999999999998654                                                             


Q ss_pred             ----------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccC
Q 039657          247 ----------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSM  310 (507)
Q Consensus       247 ----------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~  310 (507)
                                      ..++++|++.+    ..+|.+|.+|+||||+|+..|+.+++++             +  ++   
T Consensus       211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~g~~~~v~~-------------L--l~---  268 (351)
T 3utm_A          211 HETALHCAVASLHPKRKQVAELLLRKG----ANVNEKNKDFMTPLHVAAERAHNDVMEV-------------L--HK---  268 (351)
T ss_dssp             CCCHHHHHHHCCSTTHHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHH-------------H--HH---
T ss_pred             CCCHHHHHHHHhCccHHHHHHHHHHcC----CCcCCcCCCCCCHHHHHHHcCCHHHHHH-------------H--HH---
Confidence                            12456677666    6778888888888888888888776531             0  11   


Q ss_pred             CccccccccCCCCCcccccccc
Q 039657          311 PRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       311 ~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      .+.+++.+|..|+||++++...
T Consensus       269 ~ga~~n~~d~~g~t~L~~A~~~  290 (351)
T 3utm_A          269 HGAKMNALDSLGQTALHRAALA  290 (351)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCHHHHHHHc
Confidence            2345678889999999888654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.84  E-value=3.9e-21  Score=186.74  Aligned_cols=115  Identities=15%  Similarity=0.107  Sum_probs=91.4

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCccccccc--------------CCCCcHHHHHHHcCC--------------
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELN--------------TSEKNLVLLTFEKKN--------------  214 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d--------------~~G~tpLh~A~~~~~--------------  214 (507)
                      ..|..|+||||+||..|+.++|+.|++.++++ +.+|              ..|+||||+|+..|+              
T Consensus        88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           88 DVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             CSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            33567999999999999999999999999997 7777              689999999998775              


Q ss_pred             ---cccCCCCCCccchhhhcCC---------HHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcC
Q 039657          215 ---AQQSGRKETPMLIAARMGV---------TEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG  282 (507)
Q Consensus       215 ---~~~d~~g~TpLH~Aa~~g~---------~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g  282 (507)
                         +.+|.+|+||||+|+..|+         .+++++|++++++  +        .......+.+|.+|+||||+|+..|
T Consensus       167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~--~--------~~~~~~~~~~d~~g~tpL~~A~~~g  236 (260)
T 3jxi_A          167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK--L--------FPDTNLEALLNNDGLSPLMMAAKTG  236 (260)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH--H--------CTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc--c--------ccccchhhcccCCCCCHHHHHHHcC
Confidence               5678999999999998877         5655555444332  0        0001122789999999999999999


Q ss_pred             CCcccc
Q 039657          283 DHRPWL  288 (507)
Q Consensus       283 ~~~~v~  288 (507)
                      +.++++
T Consensus       237 ~~~~v~  242 (260)
T 3jxi_A          237 KIGIFQ  242 (260)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            988764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.84  E-value=2.2e-21  Score=175.43  Aligned_cols=138  Identities=19%  Similarity=0.213  Sum_probs=114.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      +..|.||||.|++.|+.++++.|++.++......|..|+||||+|+..++              +.+|.+|+||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            56789999999999999999999998776668889999999999999988              6789999999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccC
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSM  310 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~  310 (507)
                      .|+.+++++|++++                 ..+|.+|..|+||||+|+..|+.++++.               .++   
T Consensus        85 ~~~~~~v~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~---  129 (165)
T 3twr_A           85 YGHYEVAELLVKHG-----------------AVVNVADLWKFTPLHEAAAKGKYEICKL---------------LLQ---  129 (165)
T ss_dssp             TTCHHHHHHHHHTT-----------------CCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------HHH---
T ss_pred             cCcHHHHHHHHhCC-----------------CCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------HHH---
Confidence            99999666666553                 4578999999999999999999876531               111   


Q ss_pred             CccccccccCCCCCccccccccccccc
Q 039657          311 PRHFFTRFNDNGKTPKEVFTETHKDLV  337 (507)
Q Consensus       311 ~~~~~~~~N~~G~Tpldl~~~~~~~l~  337 (507)
                      ...+.+.+|.+|+||++++.+.+.+++
T Consensus       130 ~ga~~~~~~~~g~t~l~~a~~~~~~i~  156 (165)
T 3twr_A          130 HGADPTKKNRDGNTPLDLVKDGDTDIQ  156 (165)
T ss_dssp             TTCCTTCCCTTSCCTGGGSCTTCHHHH
T ss_pred             cCCCCcccCCCCCChhHhHhcCChHHH
Confidence            134567899999999999877655443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.83  E-value=1.6e-20  Score=177.72  Aligned_cols=107  Identities=23%  Similarity=0.294  Sum_probs=95.8

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      .+..|.||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|+
T Consensus        88 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  166 (223)
T 2f8y_A           88 RMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA  166 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHH
Confidence            3667999999999999999999999999997 8899999999999999987              678999999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      .+|+.++|++|+++++                 .++.+|..|+||||+|+..|+.++++
T Consensus       167 ~~~~~~~v~~Ll~~ga-----------------~~~~~~~~g~t~l~~A~~~~~~~i~~  208 (223)
T 2f8y_A          167 REGSYETAKVLLDHFA-----------------NRDITDHMDRLPRDIAQERMHHDIVR  208 (223)
T ss_dssp             HHTCHHHHHHHHHTTC-----------------CTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHcCC-----------------CCccccccCCCHHHHHHHhcchHHHH
Confidence            9999996666666544                 56889999999999999999988763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.83  E-value=1.3e-20  Score=186.72  Aligned_cols=149  Identities=12%  Similarity=0.019  Sum_probs=125.8

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccc
Q 039657          161 AQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPML  226 (507)
Q Consensus       161 ~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH  226 (507)
                      .+..|..|+||||+||..|+.++|+.|++.++++ +.+|.+|+||||+|+..|+              +.+|.+|+||||
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~  130 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLF  130 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            4567889999999999999999999999999987 8999999999999999988              678999999999


Q ss_pred             hhhhcCCHHHHHHHHhhCCc-------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          227 IAARMGVTEMVEQILDTFPA-------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       227 ~Aa~~g~~~iv~~Ll~~~~~-------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      +|+..|+.++|++|++.+++                   ..++++|++.+    ..++.+|.+|+||||+|+..|+.+++
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~d~~g~t~L~~A~~~~~~~~v  206 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG----GNIDHKISHLGTPLYLACENQQRACV  206 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTT----CCTTCCBTTTBCHHHHHHHTTCHHHH
T ss_pred             HHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            99999999999999998766                   13588899887    67899999999999999999998775


Q ss_pred             ccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          288 LLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       288 ~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +.               .++.   ..+.+ .|.+|.||++++....
T Consensus       207 ~~---------------Ll~~---ga~~~-~~~~g~t~L~~A~~~~  233 (285)
T 3d9h_A          207 KK---------------LLES---GADVN-QGKGQDSPLHAVVRTA  233 (285)
T ss_dssp             HH---------------HHHT---TCCTT-CCBTTBCHHHHHHHTT
T ss_pred             HH---------------HHHC---CCCCC-CCCCCCCHHHHHHHcC
Confidence            31               1111   12233 4788999999886543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.83  E-value=6.9e-21  Score=181.28  Aligned_cols=175  Identities=13%  Similarity=0.094  Sum_probs=135.2

Q ss_pred             cccccCCCCcHHHHhhcCCCcccCCCCccchhhhhhccccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCchh
Q 039657            2 VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCVLLFKVMMKAMLIVLGLGIWR   81 (507)
Q Consensus         2 v~~~D~~G~TPLh~lA~~p~~f~Sg~~l~~~~~~iy~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (507)
                      ++.+|.+|.||||++++       ..+...++.++-+...+...+...  ..|.+                         
T Consensus        33 ~~~~~~~g~t~L~~A~~-------~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~-------------------------   78 (231)
T 3aji_A           33 ATRTDQDSRTALHWACS-------AGHTEIVEFLLQLGVPVNDKDDAG--WSPLH-------------------------   78 (231)
T ss_dssp             GGCCCTTSCCHHHHHHH-------HTCHHHHHHHHHTTCCSCCCCTTS--CCHHH-------------------------
T ss_pred             hhcCCCCCCCHHHHHHH-------cCcHHHHHHHHHhCCCCCCcCCCC--CCHHH-------------------------
Confidence            46789999999999995       346677888877766554332111  11111                         


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCCCCCCCcccccccCCCCCCCCCccccccccccccccccCCCc
Q 039657           82 INHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSA  161 (507)
Q Consensus        82 i~~i~~~k~~h~~a~~i~~~Ll~~~~~~~~~~~g~~~~~p~~~~d~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~  161 (507)
                          ++.+..|   .++++.|++++...                                                    
T Consensus        79 ----~A~~~~~---~~~v~~Ll~~g~~~----------------------------------------------------   99 (231)
T 3aji_A           79 ----IAASAGX---DEIVKALLVKGAHV----------------------------------------------------   99 (231)
T ss_dssp             ----HHHHHTC---HHHHHHHHHTTCCT----------------------------------------------------
T ss_pred             ----HHHHcCH---HHHHHHHHHcCCCC----------------------------------------------------
Confidence                1122223   37889999985433                                                    


Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      +.+|..|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..++              +.+|.+|+||||+
T Consensus       100 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  178 (231)
T 3aji_A          100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL  178 (231)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHH
Confidence            233667999999999999999999999999997 8899999999999999987              6789999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      |+.+|+.+++++|+++             |    +.++.+|..|+||||+|+..++.+++
T Consensus       179 A~~~~~~~~v~~Ll~~-------------g----a~~~~~~~~g~t~l~~A~~~~~~~i~  221 (231)
T 3aji_A          179 ACDEERVEEAKFLVTQ-------------G----ASIYIENKEEKTPLQVAKGGLGLILK  221 (231)
T ss_dssp             HHHTTCHHHHHHHHHT-------------T----CCSCCCCTTSCCHHHHSCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHC-------------C----CCCCCCCCCCCCHHHHHHhhHHHHHH
Confidence            9999999966666655             3    45789999999999999988776654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.83  E-value=3.2e-21  Score=185.30  Aligned_cols=131  Identities=11%  Similarity=-0.060  Sum_probs=79.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccC-CCCCCccchh-
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQS-GRKETPMLIA-  228 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d-~~g~TpLH~A-  228 (507)
                      |..|+||||+||..|+.++|+.|++.++++ +.+|.+|+||||+|+..|+              +.+| .+|+||||+| 
T Consensus        51 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  129 (229)
T 2vge_A           51 NEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD  129 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHH
Confidence            455777777777777777777777777665 6667777777777777665              3343 4677777777 


Q ss_pred             -hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhh
Q 039657          229 -ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVK  307 (507)
Q Consensus       229 -a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~  307 (507)
                       +..|+.+++++|++.             +    +.++.+|..|.||||.++.....++..                   
T Consensus       130 a~~~~~~~~v~~Ll~~-------------g----a~~~~~~~~~~~~l~~~~~~~~~~~ll-------------------  173 (229)
T 2vge_A          130 PYREGYADCATYLADV-------------E----QSMGLMNSGAVYALWDYSAEFGDELSF-------------------  173 (229)
T ss_dssp             TTSTTHHHHHHHHHHH-------------H----HHTTTSGGGEEEESSCBCCSSTTBCCB-------------------
T ss_pred             HHhcChHHHHHHHHHc-------------C----CCcccccCCchHHHHHHhhccccccCc-------------------
Confidence             777777744444443             2    334555666666666444333222211                   


Q ss_pred             ccCCccccccccCCCCCcccccccc
Q 039657          308 KSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       308 ~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      ..-.....+.+|.+|+||++++...
T Consensus       174 ~~ga~~~~~~~d~~G~TpL~~A~~~  198 (229)
T 2vge_A          174 REGESVTVLRRDGPEETDWWWAALH  198 (229)
T ss_dssp             CTTCEEEEEESSCTTCSSEEEEEET
T ss_pred             cccccccccccCCCcccHHHHHHHc
Confidence            0011113567888889998888665

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.83  E-value=7.1e-21  Score=187.81  Aligned_cols=139  Identities=17%  Similarity=0.192  Sum_probs=115.1

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC-------------------cccCCCC
Q 039657          161 AQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN-------------------AQQSGRK  221 (507)
Q Consensus       161 ~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~-------------------~~~d~~g  221 (507)
                      +|.+|..|+||||+||..|+.++|+.|++.++..++..|..|+||||+|+....                   +..|..|
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            466788999999999999999999999999994459999999999999994321                   5678889


Q ss_pred             CCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHH
Q 039657          222 ETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIK  301 (507)
Q Consensus       222 ~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~  301 (507)
                      +||||+|+.+|+.++|++|++.+                 +.+|.+|.+|+||||+|+..|+.+++++            
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~g-----------------ad~n~~d~~G~TpLh~A~~~g~~~iv~~------------  234 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACE-----------------ADVNVQDDDGSTALMCACEHGHKEIAGL------------  234 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHHTCHHHHHH------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCC-----------------CCCCCCCCCCCCHHHHHHHCCCHHHHHH------------
Confidence            99999999999999666666553                 4579999999999999999999877632            


Q ss_pred             HhhhhhccCCccccccccCCCCCccccccccc
Q 039657          302 WYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       302 w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                         .++  ..+.+.+.+|++|+||++++....
T Consensus       235 ---Ll~--~~gad~~~~d~~g~TpL~~A~~~g  261 (276)
T 4hbd_A          235 ---LLA--VPSCDISLTDRDGSTALMVALDAG  261 (276)
T ss_dssp             ---HHT--STTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             ---HHh--cCCCCCcCcCCCCCCHHHHHHHcC
Confidence               011  134567889999999999987653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.83  E-value=8.5e-21  Score=181.77  Aligned_cols=137  Identities=16%  Similarity=0.117  Sum_probs=115.3

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------------cccCCC
Q 039657          161 AQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------------AQQSGR  220 (507)
Q Consensus       161 ~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------------~~~d~~  220 (507)
                      ++..|..|.||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..++                    +..|..
T Consensus        38 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (236)
T 1ikn_D           38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN  116 (236)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC
Confidence            3566888999999999999999999999999997 8899999999999999886                    356788


Q ss_pred             CCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccC-CCCcHHHHHHhcCCCcccccCchhhhhHHH
Q 039657          221 KETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDS-QGNSALHLAAKFGDHRPWLLPGAALQMQWE  299 (507)
Q Consensus       221 g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~-~GnTpLHlAa~~g~~~~v~~~gaal~~~~e  299 (507)
                      |+||||+|+.+|+.++|++|+++++                 .++.+|. .|+||||+|+..|+.+++++          
T Consensus       117 g~t~L~~A~~~~~~~~v~~Ll~~g~-----------------~~~~~~~~~g~tpL~~A~~~~~~~~v~~----------  169 (236)
T 1ikn_D          117 GHTCLHLASIHGYLGIVELLVSLGA-----------------DVNAQEPCNGRTALHLAVDLQNPDLVSL----------  169 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTC-----------------CTTCCCTTTCCCHHHHHHHTTCHHHHHH----------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC-----------------CCCCCCCCCCCCHHHHHHHcCCHHHHHH----------
Confidence            9999999999999997766666544                 5788887 99999999999999877532          


Q ss_pred             HHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          300 IKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       300 l~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                           .++   .+.+++.+|..|+||++++....
T Consensus       170 -----Ll~---~ga~~~~~~~~g~tpl~~A~~~~  195 (236)
T 1ikn_D          170 -----LLK---CGADVNRVTYQGYSPYQLTWGRP  195 (236)
T ss_dssp             -----HHT---TTCCSCCCCTTCCCGGGGCTTSS
T ss_pred             -----HHH---cCCCCCcccCCCCCHHHHHHccC
Confidence                 111   24467889999999999987653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.82  E-value=8e-21  Score=172.03  Aligned_cols=131  Identities=12%  Similarity=0.074  Sum_probs=111.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcC
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMG  232 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g  232 (507)
                      .|.||||.||..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|..|+||||+|+.+|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            5899999999999999999999999886 8999999999999999988              678899999999999999


Q ss_pred             CHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCc
Q 039657          233 VTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPR  312 (507)
Q Consensus       233 ~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~  312 (507)
                      +.+++++|++++                 ..++.+|..|+||||+|+..|+.++++.             +  ++   .+
T Consensus        81 ~~~~v~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------L--l~---~g  125 (167)
T 3v31_A           81 YTDIVKMLLDCG-----------------VDVNEYDWNGGTPLLYAVHGNHVKCVKM-------------L--LE---SG  125 (167)
T ss_dssp             CHHHHHHHHHHT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH-------------H--HH---TT
T ss_pred             CHHHHHHHHHCC-----------------CCCCcCCCCCCCHHHHHHHcCCHHHHHH-------------H--HH---cC
Confidence            999777666654                 4578999999999999999999876531             1  11   23


Q ss_pred             cccccccCCCCCccccccccc
Q 039657          313 HFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       313 ~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      .+.+.+|.+|+||++++....
T Consensus       126 ~~~~~~~~~g~t~l~~A~~~~  146 (167)
T 3v31_A          126 ADPTIETDSGYNSMDLAVALG  146 (167)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCCCcCCCCCCHHHHHHHcC
Confidence            456789999999999987653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.82  E-value=3.7e-20  Score=168.42  Aligned_cols=106  Identities=22%  Similarity=0.199  Sum_probs=95.0

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      +|..|.||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|+
T Consensus        43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  121 (169)
T 2y1l_E           43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA  121 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3667999999999999999999999999987 8899999999999999987              678999999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      .+|+.++|++|++++                 +.++.+|..|+||||+|+..|+.+++
T Consensus       122 ~~~~~~~v~~Ll~~g-----------------~~~~~~~~~g~t~l~~A~~~~~~~~~  162 (169)
T 2y1l_E          122 MFGHLEIVEVLLKNG-----------------ADVNAQDKFGKTAFDISIDNGNEDLA  162 (169)
T ss_dssp             HTTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HcCCHHHHHHHHHcC-----------------CCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence            999999666666553                 45789999999999999999997765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.82  E-value=1.6e-20  Score=170.85  Aligned_cols=108  Identities=19%  Similarity=0.146  Sum_probs=96.4

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      .+|..|+||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  109 (172)
T 3v30_A           31 KPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA  109 (172)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34668999999999999999999999999997 8899999999999999987              67899999999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +.+|+.++|++|++++                 +.++.+|.+|+||||+|+..|+.++++
T Consensus       110 ~~~~~~~~v~~Ll~~g-----------------a~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (172)
T 3v30_A          110 VRGNHVKCVEALLARG-----------------ADLTTEADSGYTPMDLAVALGYRKVQQ  152 (172)
T ss_dssp             HHTTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHcCCHHHHHHHHHcC-----------------CCccccCCCCCCHHHHHHHhCcHHHHH
Confidence            9999999666666553                 457899999999999999999988763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.82  E-value=3.8e-20  Score=165.37  Aligned_cols=105  Identities=12%  Similarity=0.076  Sum_probs=94.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      +..|.||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|+.
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  109 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            456999999999999999999999999997 8899999999999999887              6789999999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      +|+.+++++|++++                 +.++.+|..|+||||+|+..|+.+++
T Consensus       110 ~~~~~~v~~Ll~~g-----------------a~~~~~~~~g~t~l~~A~~~~~~~i~  149 (153)
T 1awc_B          110 HNHQEVVELLIKYG-----------------ADVHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             TTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHcC-----------------CCccccCCCCCCHHHHHHHcCCHHHH
Confidence            99999666666553                 45789999999999999999997765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.82  E-value=2e-20  Score=168.25  Aligned_cols=107  Identities=14%  Similarity=0.137  Sum_probs=96.0

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      .|..|+||||+|+. |+.++++.|++.++++ +.+|..|+||||+|+..++              +.+|.+|+||||+|+
T Consensus        34 ~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  111 (162)
T 1ihb_A           34 QNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA  111 (162)
T ss_dssp             CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            36679999999999 9999999999999997 8899999999999999987              678999999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      .+|+.+++++|++++++                .++.+|..|+||||+|+..|+.++++
T Consensus       112 ~~~~~~~v~~Ll~~g~~----------------~~~~~~~~g~t~l~~A~~~~~~~~~~  154 (162)
T 1ihb_A          112 KEGHLRVVEFLVKHTAS----------------NVGHRNHKGDTACDLARLYGRNEVVS  154 (162)
T ss_dssp             HTTCHHHHHHHHHHSCC----------------CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHccCC----------------CCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            99999977777776553                46899999999999999999988763

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.81  E-value=6.8e-21  Score=184.70  Aligned_cols=144  Identities=16%  Similarity=0.111  Sum_probs=104.8

Q ss_pred             CCCCChHHHHHHHc---CCHHHHHHHhhhCCcccc----------cccCCCCcHHHHHHHcCC--------------ccc
Q 039657          165 TEKMDNKILLAAKI---GVTEMVDRFLKSYPAVIQ----------ELNTSEKNLVLLTFEKKN--------------AQQ  217 (507)
Q Consensus       165 d~~g~TpLh~Aa~~---G~~~~v~~Ll~~~~~~~~----------~~d~~G~tpLh~A~~~~~--------------~~~  217 (507)
                      |..|+||||+||..   |+.++|+.|++.+++...          ..|.+|+||||+|+..|+              +.+
T Consensus        40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  119 (256)
T 2etb_A           40 GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR  119 (256)
T ss_dssp             TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence            66899999999999   999999999999876521          245789999999999988              556


Q ss_pred             CCC-------------CCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHh--cC
Q 039657          218 SGR-------------KETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAK--FG  282 (507)
Q Consensus       218 d~~-------------g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~--~g  282 (507)
                      |..             |+||||+|+.+|+.++|++|++...          .+    +.+|.+|.+|+||||+|+.  .+
T Consensus       120 ~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~----------~g----a~~n~~d~~g~TpLh~A~~~~~~  185 (256)
T 2etb_A          120 ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH----------QP----ASLEATDSLGNTVLHALVMIADN  185 (256)
T ss_dssp             CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS----------CC----CCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc----------cC----CCcCccCCCCCCHHHHHHHcccC
Confidence            655             9999999999999996666665210          23    5689999999999999999  45


Q ss_pred             CCc-------ccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          283 DHR-------PWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       283 ~~~-------~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +.+       ++++     .+....    .+.  ......+.+|++|+||++++....
T Consensus       186 ~~~~~~~~~~iv~~-----Ll~~ga----~~~--~~~~~~~~~d~~g~tpL~~A~~~g  232 (256)
T 2etb_A          186 SPENSALVIHMYDG-----LLQMGA----RLC--PTVQLEEISNHQGLTPLKLAAKEG  232 (256)
T ss_dssp             CHHHHHHHHHHHHH-----HHHHHH----HHS--TTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             CchhhHHHHHHHHH-----HHHcCC----Ccc--cccccccccCCCCCCHHHHHHHhC
Confidence            544       3211     000000    000  000011789999999999987653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.81  E-value=2.2e-20  Score=169.91  Aligned_cols=131  Identities=15%  Similarity=0.108  Sum_probs=110.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCC
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGV  233 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~  233 (507)
                      +.||||.||..|+.++++.|++.+++.++.+|..|+||||+|+..++              +.+|.+|+||||+|+.+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            57899999999999999999999999779999999999999999988              6789999999999999999


Q ss_pred             HHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCcc
Q 039657          234 TEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRH  313 (507)
Q Consensus       234 ~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~  313 (507)
                      .+++++|++++                 ..++.+|..|+||||+|+..|+.++++.               .++   .+.
T Consensus        82 ~~~v~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~---~ga  126 (172)
T 3v30_A           82 TDIVGLLLERD-----------------VDINIYDWNGGTPLLYAVRGNHVKCVEA---------------LLA---RGA  126 (172)
T ss_dssp             HHHHHHHHTTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHH---TTC
T ss_pred             HHHHHHHHHcC-----------------CCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------HHH---cCC
Confidence            99666666553                 4578999999999999999999877531               111   134


Q ss_pred             ccccccCCCCCccccccccc
Q 039657          314 FFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       314 ~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +.+.+|.+|+||++++....
T Consensus       127 ~~~~~~~~g~t~l~~A~~~~  146 (172)
T 3v30_A          127 DLTTEADSGYTPMDLAVALG  146 (172)
T ss_dssp             CTTCCCTTSCCHHHHHHHHT
T ss_pred             CccccCCCCCCHHHHHHHhC
Confidence            56789999999999987653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.81  E-value=1.3e-20  Score=165.17  Aligned_cols=110  Identities=17%  Similarity=0.121  Sum_probs=97.7

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCC-CCCc
Q 039657          160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGR-KETP  224 (507)
Q Consensus       160 ~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~-g~Tp  224 (507)
                      +++.+|..|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+. ++              +.+|.. |+||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            44677889999999999999999999999999987 8899999999999999 87              678888 9999


Q ss_pred             cchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          225 MLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       225 LH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      ||+|+.+|+.+++++|++++                 +.++.+|..|+||||+|+..|+.++++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~g-----------------a~~~~~d~~g~tpl~~A~~~~~~~~~~  128 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAG-----------------ARLDVCDAWGRLPVDLAEEQGHRDIAR  128 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTC-----------------CCCCCCSSSSSCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcC-----------------CCCCccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999666666554                 457899999999999999999977653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.81  E-value=3.6e-20  Score=170.01  Aligned_cols=133  Identities=17%  Similarity=0.220  Sum_probs=109.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhc
Q 039657          166 EKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARM  231 (507)
Q Consensus       166 ~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~  231 (507)
                      ..+.+|||.||..|+.++|+.|++.++..++..|..|+||||+|+..++              +.+|.+|+||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            3578999999999999999999999776668999999999999999987              67899999999999999


Q ss_pred             CCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCC
Q 039657          232 GVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMP  311 (507)
Q Consensus       232 g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~  311 (507)
                      |+.++|++|++++                 ..+|.+|..|+||||+|+..|+.+++++               .++   .
T Consensus        83 ~~~~~v~~Ll~~g-----------------~~~~~~d~~g~t~L~~A~~~~~~~~v~~---------------Ll~---~  127 (179)
T 3f6q_A           83 GHRDIVQKLLQYK-----------------ADINAVNEHGNVPLHYACFWGQDQVAED---------------LVA---N  127 (179)
T ss_dssp             TCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHH---T
T ss_pred             CCHHHHHHHHHcC-----------------CCCCccCCCCCCHHHHHHHcCCHHHHHH---------------HHH---C
Confidence            9999666666553                 4578999999999999999999776531               011   2


Q ss_pred             ccccccccCCCCCccccccccc
Q 039657          312 RHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       312 ~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      ..+.+.+|.+|+||++++....
T Consensus       128 ga~~~~~~~~g~tpl~~A~~~~  149 (179)
T 3f6q_A          128 GALVSICNKYGEMPVDKAKAPL  149 (179)
T ss_dssp             TCCSSBCCTTSCCGGGGSCHHH
T ss_pred             CCCcchhccCCCCcHHHHHHHH
Confidence            3456789999999999987653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.81  E-value=4.8e-20  Score=177.67  Aligned_cols=139  Identities=9%  Similarity=-0.023  Sum_probs=94.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCC
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGV  233 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~  233 (507)
                      |.||||.||..|+.++|+.|++.++++ +.+|.+|+||||+||..|+              +.+|.+|+||||+|+.+|+
T Consensus        37 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~  115 (239)
T 1ycs_B           37 PLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN  115 (239)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            566777777777777777777766665 6666777777777776665              6677888888888999999


Q ss_pred             HHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCC-cHHHHH--HhcCCCcccccCchhhhhHHHHHHhhhhhccC
Q 039657          234 TEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGN-SALHLA--AKFGDHRPWLLPGAALQMQWEIKWYQFVKKSM  310 (507)
Q Consensus       234 ~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~Gn-TpLHlA--a~~g~~~~v~~~gaal~~~~el~w~~~v~~~~  310 (507)
                      .++|++|+++++                 .++.+|..|. ||||+|  +..|+.+++++.     +....    .+....
T Consensus       116 ~~~v~~Ll~~ga-----------------~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L-----l~~~a----~~~~~~  169 (239)
T 1ycs_B          116 VQVCKFLVESGA-----------------AVFAMTYSDMQTAADKCEEMEEGYTQCSQFL-----YGVQE----KMGIMN  169 (239)
T ss_dssp             HHHHHHHHHTTC-----------------CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH-----HHHHH----HTTTTG
T ss_pred             HHHHHHHHHcCC-----------------CcceecCCCCcchHHHHHHhhhccHHHHHHH-----HHhhh----cccccc
Confidence            996666666544                 5788888877 999999  778888876421     11100    011001


Q ss_pred             CccccccccCCCCCccccccccc
Q 039657          311 PRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       311 ~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      ........+..+++|.+++....
T Consensus       170 ~~~~~al~d~~~~~~~eLa~~~G  192 (239)
T 1ycs_B          170 KGVIYALWDYEPQNDDELPMKEG  192 (239)
T ss_dssp             GGEEEESSCBCCSSTTBCCBCSS
T ss_pred             cceEEEEeccCCCCCCcccccCC
Confidence            11223456788999998876654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.81  E-value=1.3e-20  Score=182.89  Aligned_cols=150  Identities=15%  Similarity=0.168  Sum_probs=105.0

Q ss_pred             CCCCChHHHHHH---HcCCHHHHHHHhhhCCcc----------cccccCCCCcHHHHHHHcCC--------------ccc
Q 039657          165 TEKMDNKILLAA---KIGVTEMVDRFLKSYPAV----------IQELNTSEKNLVLLTFEKKN--------------AQQ  217 (507)
Q Consensus       165 d~~g~TpLh~Aa---~~G~~~~v~~Ll~~~~~~----------~~~~d~~G~tpLh~A~~~~~--------------~~~  217 (507)
                      |..|+||||+|+   +.|+.++|+.|++.+++.          ....|.+|+||||+|+..|+              +.+
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  122 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ  122 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc
Confidence            567999999999   789999999999987432          24556699999999999998              555


Q ss_pred             C--------------CCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCC
Q 039657          218 S--------------GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD  283 (507)
Q Consensus       218 d--------------~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~  283 (507)
                      |              .+|+||||+|+.+|+.++|++|++.+.          .+    +.+|.+|..|+||||+|++.|+
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----------~g----a~~~~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH----------KQ----ADLRRQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS----------CC----CCTTCCCTTSCCHHHHHHHHCC
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc----------cC----CCCcccCCCCCcHHHHHHHhcc
Confidence            5              589999999999999996666666210          22    5689999999999999999887


Q ss_pred             CcccccCchhhhh-HHHHHHhhh--hhccCCccccccccCCCCCccccccccc
Q 039657          284 HRPWLLPGAALQM-QWEIKWYQF--VKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       284 ~~~v~~~gaal~~-~~el~w~~~--v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      ...-.     ... ..-++++-.  ..-.......+.+|++|+||++++....
T Consensus       189 ~~~~~-----~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  236 (260)
T 3jxi_A          189 NTREN-----TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG  236 (260)
T ss_dssp             SSHHH-----HHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             CchhH-----HHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC
Confidence            32100     000 000000000  0000001122679999999999987653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.81  E-value=1.2e-20  Score=169.47  Aligned_cols=128  Identities=17%  Similarity=0.098  Sum_probs=93.9

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCC-ccch
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKET-PMLI  227 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~T-pLH~  227 (507)
                      ..++.|.||||+||..|+.++|+.|++.++++ +.+|..|+||||+|+ .++              +.+|..|+| |||+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            44678999999999999999999999999987 889999999999985 555              678999999 9999


Q ss_pred             hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhh
Q 039657          228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVK  307 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~  307 (507)
                      |+.+|+.++|++|++++                 +.++.+|..|+||||+|+..|+.+++++                + 
T Consensus        85 A~~~~~~~~v~~Ll~~g-----------------a~~~~~d~~g~tpl~~A~~~~~~~~v~~----------------L-  130 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAG-----------------ARLDVRDAWGRLPVDLAEELGHRDVARY----------------L-  130 (156)
T ss_dssp             HHHHTCHHHHHHHHHHT-----------------CCSSCCCTTCCCHHHHHHHHTCHHHHHH----------------H-
T ss_pred             HHHCCCHHHHHHHHHcC-----------------CCCcccCCCCCCHHHHHHHhCHHHHHHH----------------H-
Confidence            99999999666666653                 4579999999999999999999876531                1 


Q ss_pred             ccCCccccccccCCCCCccc
Q 039657          308 KSMPRHFFTRFNDNGKTPKE  327 (507)
Q Consensus       308 ~~~~~~~~~~~N~~G~Tpld  327 (507)
                       .....+.+.+|..|.||.+
T Consensus       131 -l~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B          131 -RAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             -SSCC---------------
T ss_pred             -HHcCCCCCccCcCcCcccc
Confidence             1124456788889998875

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.80  E-value=8.8e-20  Score=180.47  Aligned_cols=148  Identities=15%  Similarity=0.079  Sum_probs=118.0

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      .|..|.||||+||..|+.++|+.|++.++++ +.+|.+|+||||+|+..|+              +.+|.+|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  147 (299)
T 1s70_B           69 ANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAE  147 (299)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence            3567999999999999999999999999997 8899999999999999987              678999999999999


Q ss_pred             hcCCHHHHHHHHhhCCc--hH-----------HHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhh
Q 039657          230 RMGVTEMVEQILDTFPA--NQ-----------YLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQM  296 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~--~~-----------vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~  296 (507)
                      ..|+.++++.++.....  +.           .+..++..+.   ......|..|.||||+|+..|+.+++++       
T Consensus       148 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~-------  217 (299)
T 1s70_B          148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH---INDVRHAKSGGTALHVAAAKGYTEVLKL-------  217 (299)
T ss_dssp             SHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC---CCCCCCTTTCCCHHHHHHHHTCHHHHHH-------
T ss_pred             hcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC---cchhhhcCCCCCHHHHHHHCCcHHHHHH-------
Confidence            99999999998876443  10           1223333331   3345678899999999999999877531       


Q ss_pred             HHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          297 QWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       297 ~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                              .++   .+.+++.+|.+|.||++++....
T Consensus       218 --------Ll~---~g~d~~~~d~~g~tpL~~A~~~~  243 (299)
T 1s70_B          218 --------LIQ---ARYDVNIKDYDGWTPLHAAAHWG  243 (299)
T ss_dssp             --------HHT---TTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             --------HHH---cCCCCCCcCCCCCcHHHHHHhcC
Confidence                    011   23456789999999999986543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.80  E-value=4.2e-20  Score=168.08  Aligned_cols=133  Identities=23%  Similarity=0.238  Sum_probs=111.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      ...+.||||.||+.|+.++|+.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|+.
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            345789999999999999999999999997 8899999999999999987              6788999999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccC
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSM  310 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~  310 (507)
                      +|+.+++++|++++                 ..++.+|.+|+||||+|+..|+.++++.             +  ++   
T Consensus        90 ~~~~~~~~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------L--l~---  134 (169)
T 2y1l_E           90 FGHLEIVEVLLKNG-----------------ADVNANDMEGHTPLHLAAMFGHLEIVEV-------------L--LK---  134 (169)
T ss_dssp             TTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH-------------H--HH---
T ss_pred             cCCHHHHHHHHHcC-----------------CCCCCCCCCCCCHHHHHHHcCCHHHHHH-------------H--HH---
Confidence            99999666666553                 4578999999999999999999876531             1  11   


Q ss_pred             CccccccccCCCCCccccccccc
Q 039657          311 PRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       311 ~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      ...+.+.+|.+|+||++++....
T Consensus       135 ~g~~~~~~~~~g~t~l~~A~~~~  157 (169)
T 2y1l_E          135 NGADVNAQDKFGKTAFDISIDNG  157 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cCCCCCCcCCCCCCHHHHHHHhC
Confidence            13356788999999999987653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.80  E-value=4.4e-20  Score=164.94  Aligned_cols=129  Identities=19%  Similarity=0.166  Sum_probs=108.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCC
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGV  233 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~  233 (507)
                      +.||||.|++.|+.++++.|++.+++. + .|..|+||||+|+..++              +.+|.+|+||||+|+.+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            468999999999999999999999986 3 68999999999999987              6789999999999999999


Q ss_pred             HHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCcc
Q 039657          234 TEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRH  313 (507)
Q Consensus       234 ~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~  313 (507)
                      .+++++|++++                 ..++.+|..|+||||+|+..|+.++++.               .++   .+.
T Consensus        80 ~~~v~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~---~ga  124 (153)
T 1awc_B           80 ANIVEVLLKHG-----------------ADVNAKDMLKMTALHWATEHNHQEVVEL---------------LIK---YGA  124 (153)
T ss_dssp             HHHHHHHHTTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHH---TTC
T ss_pred             HHHHHHHHHcC-----------------CCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------HHH---cCC
Confidence            99666666553                 4578999999999999999999877531               111   133


Q ss_pred             ccccccCCCCCccccccccc
Q 039657          314 FFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       314 ~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +.+.+|++|+||++++....
T Consensus       125 ~~~~~~~~g~t~l~~A~~~~  144 (153)
T 1awc_B          125 DVHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             CTTCCCTTSCCHHHHHHHTT
T ss_pred             CccccCCCCCCHHHHHHHcC
Confidence            56789999999999987653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.80  E-value=3.5e-20  Score=166.58  Aligned_cols=131  Identities=23%  Similarity=0.186  Sum_probs=108.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcC
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMG  232 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g  232 (507)
                      ...||||.|+..|+.++++.|++.++++ +.+|..|+||||+|+. ++              +.+|..|+||||+|+.+|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4679999999999999999999999997 8899999999999988 66              678999999999999999


Q ss_pred             CHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCc
Q 039657          233 VTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPR  312 (507)
Q Consensus       233 ~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~  312 (507)
                      +.+++++|++++                 ..+|.+|.+|+||||+|+..|+.++++.             +  ++.  ..
T Consensus        82 ~~~~v~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------L--l~~--g~  127 (162)
T 1ihb_A           82 FLDTLQTLLEFQ-----------------ADVNIEDNEGNLPLHLAAKEGHLRVVEF-------------L--VKH--TA  127 (162)
T ss_dssp             CHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH-------------H--HHH--SC
T ss_pred             CHHHHHHHHHcC-----------------CCCCCcCCCCCCHHHHHHHcCCHHHHHH-------------H--HHc--cC
Confidence            999666666553                 4578999999999999999999877531             0  111  11


Q ss_pred             cccccccCCCCCccccccccc
Q 039657          313 HFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       313 ~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      ...+.+|.+|+||++++....
T Consensus       128 ~~~~~~~~~g~t~l~~A~~~~  148 (162)
T 1ihb_A          128 SNVGHRNHKGDTACDLARLYG  148 (162)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCCcCCCCCcHHHHHHHcC
Confidence            124688999999999987653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.80  E-value=1.5e-19  Score=161.50  Aligned_cols=106  Identities=18%  Similarity=0.139  Sum_probs=95.2

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      ..|..|+||||+ |..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|
T Consensus        31 ~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (156)
T 1bd8_A           31 ALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA  108 (156)
T ss_dssp             CCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             ccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            336679999999 9999999999999999997 8899999999999999988              67899999999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +.+|+.++|++|++. .                 .++.+|.+|+||||+|+..|+.++++
T Consensus       109 ~~~~~~~~v~~Ll~~-~-----------------~~~~~~~~g~t~l~~A~~~~~~~~v~  150 (156)
T 1bd8_A          109 VQEGHTAVVSFLAAE-S-----------------DLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHHTCHHHHHHHHTT-S-----------------CTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             HHhChHHHHHHHHhc-c-----------------CCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            999999977777765 3                 46889999999999999999987753

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.79  E-value=9.2e-20  Score=162.94  Aligned_cols=129  Identities=20%  Similarity=0.195  Sum_probs=106.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCC
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGV  233 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~  233 (507)
                      |.||||.||..|+.++++.|++..+...+..|..|+||||+ +..++              +.+|.+|+||||+|+.+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            57999999999999999999999433348899999999999 77776              6789999999999999999


Q ss_pred             HHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCcc
Q 039657          234 TEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRH  313 (507)
Q Consensus       234 ~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~  313 (507)
                      .+++++|++++                 ..++.+|..|+||||+|+..|+.++++.                +...   .
T Consensus        81 ~~~v~~Ll~~g-----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~----------------Ll~~---~  124 (156)
T 1bd8_A           81 LDTLKVLVEHG-----------------ADVNVPDGTGALPIHLAVQEGHTAVVSF----------------LAAE---S  124 (156)
T ss_dssp             HHHHHHHHHTT-----------------CCSCCCCTTSCCHHHHHHHHTCHHHHHH----------------HHTT---S
T ss_pred             HHHHHHHHHcC-----------------CCCCCcCCCCCcHHHHHHHhChHHHHHH----------------HHhc---c
Confidence            99666666553                 4578999999999999999999776531                1111   4


Q ss_pred             ccccccCCCCCccccccccc
Q 039657          314 FFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       314 ~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +.+.+|.+|.||++++....
T Consensus       125 ~~~~~~~~g~t~l~~A~~~~  144 (156)
T 1bd8_A          125 DLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHSC
T ss_pred             CCCCcCCCCCCHHHHHHHcC
Confidence            56789999999999987653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.78  E-value=1.4e-19  Score=158.67  Aligned_cols=105  Identities=19%  Similarity=0.205  Sum_probs=93.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      ...|.||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|+.
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            446899999999999999999999999997 8899999999999999887              6789999999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      .|+.++|++|++++                 +.++.+|.+|+||||+|+..|+.+++
T Consensus        90 ~~~~~~v~~Ll~~g-----------------~~~~~~~~~g~tpl~~A~~~~~~~~~  129 (136)
T 2jab_A           90 IGHLEIAEVLLKHG-----------------ADVNAQDKFGKTAFDISIGNGNEDLA  129 (136)
T ss_dssp             HTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHcC-----------------CCCcCcCCCCCCHHHHHHHCCCHHHH
Confidence            99999666666553                 45789999999999999999997765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.78  E-value=7.4e-20  Score=160.36  Aligned_cols=106  Identities=11%  Similarity=0.078  Sum_probs=94.0

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      +|..|+||||+||..|+.++++.|++.++++ +.+|..|+||||+|+..++              +.+|..|+||||+|+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            3778999999999999999999999999987 8899999999999999987              678999999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      .+|+.+++++|++++                 +.++.+|..|+||||+|+..+..+++
T Consensus        85 ~~~~~~~v~~Ll~~g-----------------a~~~~~~~~g~tpl~~A~~~~~~~~l  125 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYG-----------------ASRNAVNIFGLRPVDYTDDESMKSLL  125 (137)
T ss_dssp             HTTCHHHHHHHHHTT-----------------CCTTCCCTTSCCGGGGCCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHcC-----------------CCCCCCCCCCCCHHHHHhhccHHHHH
Confidence            999999666666553                 45789999999999999987765554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.78  E-value=9.3e-20  Score=180.56  Aligned_cols=110  Identities=11%  Similarity=0.027  Sum_probs=88.7

Q ss_pred             CCCcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCC
Q 039657          158 NGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKET  223 (507)
Q Consensus       158 ~~~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~T  223 (507)
                      ....+.+|..|.||||+||..|+.++|+.|++.++++ +..  +|+||||+|+..|+              +.+|..|+|
T Consensus        21 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t   97 (285)
T 3kea_A           21 SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNT   97 (285)
T ss_dssp             STTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             hCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc
Confidence            3457888999999999999999999999999999887 555  59999999999887              678999999


Q ss_pred             ccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCC-CcHHHHHHhcCCCccc
Q 039657          224 PMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQG-NSALHLAAKFGDHRPW  287 (507)
Q Consensus       224 pLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~G-nTpLHlAa~~g~~~~v  287 (507)
                      |||+|+.+|+.++|++|++++++                 ++.+|..| .||||+|+..|+.+++
T Consensus        98 ~L~~A~~~g~~~~v~~Ll~~ga~-----------------~~~~~~~g~~t~L~~A~~~~~~~~v  145 (285)
T 3kea_A           98 ALYYAVDSGNMQTVKLFVKKNWR-----------------LMFYGKTGWKTSFYHAVMLNDVSIV  145 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCGG-----------------GGGCSSSGGGSHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCC-----------------CCccCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999988888777544                 45555555 4555555555554443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.77  E-value=3.5e-19  Score=160.80  Aligned_cols=104  Identities=18%  Similarity=0.142  Sum_probs=92.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      +..|+||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|..|+||||+|+.
T Consensus        39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  117 (165)
T 3twr_A           39 EGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA  117 (165)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH
Confidence            567999999999999999999999999997 8999999999999999987              6789999999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      +|+.+++++|++++                 +.++.+|.+|+||||+|+. |+.+++
T Consensus       118 ~~~~~~v~~Ll~~g-----------------a~~~~~~~~g~t~l~~a~~-~~~~i~  156 (165)
T 3twr_A          118 KGKYEICKLLLQHG-----------------ADPTKKNRDGNTPLDLVKD-GDTDIQ  156 (165)
T ss_dssp             TTCHHHHHHHHHTT-----------------CCTTCCCTTSCCTGGGSCT-TCHHHH
T ss_pred             cCCHHHHHHHHHcC-----------------CCCcccCCCCCChhHhHhc-CChHHH
Confidence            99999666666553                 4578999999999999876 776665

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.77  E-value=4.6e-19  Score=162.56  Aligned_cols=107  Identities=11%  Similarity=0.151  Sum_probs=94.6

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      ..|..|+||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|
T Consensus        34 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  112 (179)
T 3f6q_A           34 QGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA  112 (179)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            44678999999999999999999999999997 8899999999999999987              67899999999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      +..|+.++|++|+++             +    +.++.+|..|.||||+|+..++.+++
T Consensus       113 ~~~~~~~~v~~Ll~~-------------g----a~~~~~~~~g~tpl~~A~~~~~~~~~  154 (179)
T 3f6q_A          113 CFWGQDQVAEDLVAN-------------G----ALVSICNKYGEMPVDKAKAPLRELLR  154 (179)
T ss_dssp             HHTTCHHHHHHHHHT-------------T----CCSSBCCTTSCCGGGGSCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHC-------------C----CCcchhccCCCCcHHHHHHHHHHHHH
Confidence            999999966666655             3    45789999999999999988775554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.77  E-value=4.7e-19  Score=155.29  Aligned_cols=81  Identities=9%  Similarity=-0.015  Sum_probs=69.7

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCC-CCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTS-EKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~-G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      +|..|+||||+|+. |+.++++.|++.++++ +.+|.. |+||||+|+..++              +.+|.+|+||||+|
T Consensus        41 ~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A  118 (136)
T 1d9s_A           41 LNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA  118 (136)
T ss_dssp             CCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHH
T ss_pred             cCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            35678899999999 9999999999988886 788888 8999999988877              67888999999999


Q ss_pred             hhcCCHHHHHHHHhhCCc
Q 039657          229 ARMGVTEMVEQILDTFPA  246 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~  246 (507)
                      +.+|+.+++++|+++++|
T Consensus       119 ~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          119 EEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHTCHHHHHHHHHHHCC
T ss_pred             HHcCCHHHHHHHHHcCCC
Confidence            999999999888887653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.77  E-value=9.1e-19  Score=149.76  Aligned_cols=104  Identities=25%  Similarity=0.305  Sum_probs=93.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcC
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMG  232 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g  232 (507)
                      +|+||||+|+..|+.++++.|++.++++ +..|..|+||||+|+..++              +.+|..|+||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            4899999999999999999999999987 8899999999999999887              678899999999999999


Q ss_pred             CHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          233 VTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       233 ~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +.+++++|++.+                 ..++.+|..|+||||+|+..|+.++++
T Consensus        80 ~~~~~~~Ll~~g-----------------~~~~~~~~~g~t~l~~A~~~~~~~~~~  118 (126)
T 1n0r_A           80 HLEVVKLLLEAG-----------------ADVNAKDKNGRTPLHLAARNGHLEVVK  118 (126)
T ss_dssp             CHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHcC-----------------CCCcccCCCCCCHHHHHHHcCcHHHHH
Confidence            999666666553                 457899999999999999999977753

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.77  E-value=2.2e-19  Score=154.46  Aligned_cols=100  Identities=15%  Similarity=0.119  Sum_probs=87.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      +..|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..++              +.+|.+|+||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            456899999999999999999999999987 8899999999999999987              6789999999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcC
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG  282 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g  282 (507)
                      .|+.++|++|++++                 +.++.+|.+|+||||+|+..+
T Consensus        83 ~~~~~~v~~Ll~~g-----------------a~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           83 EGHVSCVKLLLSKG-----------------ADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHCCCHH
T ss_pred             cCCHHHHHHHHHcC-----------------CCCCCcCCCCCCHHHHhCCHH
Confidence            99999666666654                 457899999999999995443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.75  E-value=1.7e-19  Score=173.16  Aligned_cols=131  Identities=15%  Similarity=0.025  Sum_probs=106.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      +.+|.||||+||..|+.++|+.|++.++++ +.+|.+|+||||+|+..|+              +.+|.+|+||||+|+.
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~   96 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS   96 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            557899999999999999999999999987 8899999999999999988              6789999999999999


Q ss_pred             cCCHHHHHHHHhhCCchHHHHHHHhccccccccccccc-CCCCcHHHHH--HhcCCCcccccCchhhhhHHHHHHhhhhh
Q 039657          231 MGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVD-SQGNSALHLA--AKFGDHRPWLLPGAALQMQWEIKWYQFVK  307 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D-~~GnTpLHlA--a~~g~~~~v~~~gaal~~~~el~w~~~v~  307 (507)
                      +|+.++|++|++.++                 .++.+| .+|+||||+|  +..|+.+++++     .++          
T Consensus        97 ~g~~~~v~~Ll~~ga-----------------~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~-----Ll~----------  144 (229)
T 2vge_A           97 CNDTVICMALVQHGA-----------------AIFATTLSDGATAFEKCDPYREGYADCATY-----LAD----------  144 (229)
T ss_dssp             TTCHHHHHHHHTTTC-----------------CTTCCCSSTTCCTGGGCCTTSTTHHHHHHH-----HHH----------
T ss_pred             cCCHHHHHHHHHcCC-----------------CcccccCCCCCCHHHHHHHHhcChHHHHHH-----HHH----------
Confidence            999996666666544                 467776 6999999999  88888776532     010          


Q ss_pred             ccCCccccccccCCCCCccccccc
Q 039657          308 KSMPRHFFTRFNDNGKTPKEVFTE  331 (507)
Q Consensus       308 ~~~~~~~~~~~N~~G~Tpldl~~~  331 (507)
                         ...+.+.+|+.|.||+..+..
T Consensus       145 ---~ga~~~~~~~~~~~~l~~~~~  165 (229)
T 2vge_A          145 ---VEQSMGLMNSGAVYALWDYSA  165 (229)
T ss_dssp             ---HHHHTTTSGGGEEEESSCBCC
T ss_pred             ---cCCCcccccCCchHHHHHHhh
Confidence               122345677788888765443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.75  E-value=6.7e-19  Score=158.01  Aligned_cols=95  Identities=9%  Similarity=0.027  Sum_probs=53.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCc-HHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKN-LVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~t-pLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      |..|+||||+|+ .|+.++++.|++.++++ +.+|..|+| |||+|+..++              +.+|.+|+||||+|+
T Consensus        42 ~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  119 (156)
T 1bi7_B           42 NSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE  119 (156)
T ss_dssp             CSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            445666666664 66666666666666665 666666666 6666666665              567778888888899


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHH
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLA  278 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlA  278 (507)
                      .+|+.+++++|+++             +    +.++.+|..|+||.+-+
T Consensus       120 ~~~~~~~v~~Ll~~-------------g----a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          120 ELGHRDVARYLRAA-------------A----GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHTCHHHHHHHSSC-------------C---------------------
T ss_pred             HhCHHHHHHHHHHc-------------C----CCCCccCcCcCcccccC
Confidence            99999955555544             4    56799999999998744

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.75  E-value=5.9e-19  Score=172.80  Aligned_cols=149  Identities=16%  Similarity=0.134  Sum_probs=105.4

Q ss_pred             CCCCCChHHHHHHHc---CCHHHHHHHhhhCCcc------cc----cccCCCCcHHHHHHHcCC--------------cc
Q 039657          164 GTEKMDNKILLAAKI---GVTEMVDRFLKSYPAV------IQ----ELNTSEKNLVLLTFEKKN--------------AQ  216 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~---G~~~~v~~Ll~~~~~~------~~----~~d~~G~tpLh~A~~~~~--------------~~  216 (507)
                      .|..|+||||+||..   |+.++|+.|++.+++.      ++    ..|..|+||||+|+..++              +.
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~  129 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA  129 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence            367899999999987   9999999999987542      12    267799999999999988              55


Q ss_pred             cCC--------------CCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcC
Q 039657          217 QSG--------------RKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG  282 (507)
Q Consensus       217 ~d~--------------~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g  282 (507)
                      +|.              .|+||||+|+.+|+.++|++|++.+.          .+    +.+|.+|.+|+||||+|+..|
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----------~g----ad~~~~d~~g~tpLh~A~~~~  195 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW----------QP----ADISARDSVGNTVLHALVEVA  195 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS----------CC----CCTTCCCTTSCCHHHHHHHHC
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc----------CC----CCceeeCCCCCcHHHHHHHcc
Confidence            565              79999999999999996666666210          23    568999999999999999998


Q ss_pred             CCcccccCchhhhh-HHHHHHhhhhhcc----CCccccccccCCCCCccccccccc
Q 039657          283 DHRPWLLPGAALQM-QWEIKWYQFVKKS----MPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       283 ~~~~v~~~gaal~~-~~el~w~~~v~~~----~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +...-.     ..+ ..-++++  ++..    ......+.+|.+|+||++++....
T Consensus       196 ~~~~~~-----~~~~~~~v~~L--l~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g  244 (273)
T 2pnn_A          196 DNTVDN-----TKFVTSMYNEI--LILGAKLHPTLKLEEITNRKGLTPLALAASSG  244 (273)
T ss_dssp             CSCHHH-----HHHHHHHHHHH--HHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             CcchhH-----HHHHHHHHHHH--HHhhhhcccccccccccCCCCCCHHHHHHHhC
Confidence            743210     000 0000110  0000    000112468999999999987653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.74  E-value=6.7e-19  Score=163.72  Aligned_cols=105  Identities=8%  Similarity=-0.015  Sum_probs=90.2

Q ss_pred             CCCChHHHHHHHcCCH----HHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------------cccCCCC
Q 039657          166 EKMDNKILLAAKIGVT----EMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------------AQQSGRK  221 (507)
Q Consensus       166 ~~g~TpLh~Aa~~G~~----~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------------~~~d~~g  221 (507)
                      ..|+||||+|+.+|+.    ++++.||+.++++ +.+|.+|+||||+|+..++                    +.+|.+|
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g  114 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPY  114 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGG
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCc
Confidence            5699999999999985    5999999999998 9999999999999998763                    7899999


Q ss_pred             C-CccchhhhcCC-----HHHHHHHHhhCCchHHHHHHHh-cccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          222 E-TPMLIAARMGV-----TEMVEQILDTFPANQYLQALLN-RKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       222 ~-TpLH~Aa~~g~-----~~iv~~Ll~~~~~~~vv~~Ll~-~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      + ||||+|+..|.     .+             ++++|++ .|    +.+|.+|..|.||||+|++.|+.++++
T Consensus       115 ~ttpLh~A~~~~~~~~~~~~-------------iv~~Ll~~~g----ad~~~~d~~G~TpL~~A~~~~~~~~v~  171 (186)
T 3t8k_A          115 KIVVFKNIFNYFVDENEMIP-------------LYKLIFSQSG----LQLLIKDKWGLTALEFVKRCQKPIALK  171 (186)
T ss_dssp             TBCTTGGGGGCCSCHHHHHH-------------HHHHHHTSTT----CCTTCCCTTSCCHHHHHHTTTCHHHHH
T ss_pred             CchHHHHHHHcCCChhhHHH-------------HHHHHHHhcC----CCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            9 99999999664     34             4555555 44    678999999999999999999987764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.73  E-value=2.2e-18  Score=158.96  Aligned_cols=104  Identities=17%  Similarity=0.192  Sum_probs=91.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccC-CCCCCccchhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQS-GRKETPMLIAA  229 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d-~~g~TpLH~Aa  229 (507)
                      +..|.||||+||..|+.++++.|++ +.++ +.+|.+|+||||+|+..++              +.+| .+|+||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            5679999999999999999999999 7776 8899999999999999987              5566 88999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      ..|+.+++++|++++                 +.++.+|.+|+||||+|++.++.+..
T Consensus       119 ~~~~~~~v~~Ll~~g-----------------a~~~~~d~~g~tpl~~A~~~~~~~~~  159 (183)
T 3deo_A          119 GYVRPEVVEALVELG-----------------ADIEVEDERGLTALELAREILKTTPK  159 (183)
T ss_dssp             HTTCHHHHHHHHHHT-----------------CCTTCCCTTSCCHHHHHHHHHHTCCC
T ss_pred             hcCcHHHHHHHHHcC-----------------CCCcCCCCCCCCHHHHHHHhccCccc
Confidence            999999766666654                 45789999999999999998775543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.73  E-value=8.4e-19  Score=166.48  Aligned_cols=109  Identities=18%  Similarity=0.156  Sum_probs=96.4

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------cccCCCCCCccc
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------AQQSGRKETPML  226 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------~~~d~~g~TpLH  226 (507)
                      +.++..|.||||+||..|+.++|+.|++.++++ +.+|..|+||||+||..++               +.+|.+|+||||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            345678999999999999999999999999997 8899999999999999987               678999999999


Q ss_pred             hhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          227 IAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       227 ~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +|+.+|+.++|++|++++                 +.++.+|.+|+||||+|+..|+.++++
T Consensus       146 ~A~~~~~~~~v~~Ll~~g-----------------a~~~~~~~~g~t~l~~A~~~~~~~~l~  190 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKG-----------------ARTDLRNIEKKLAFDMATNAACASLLK  190 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHT-----------------CCSCCCCTTSCCHHHHCCSHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHcC-----------------CCCccccCCCCCHHHHhcchhHHHHHH
Confidence            999999999666666653                 457899999999999999988877654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.71  E-value=1.7e-18  Score=166.74  Aligned_cols=127  Identities=15%  Similarity=0.080  Sum_probs=76.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcC
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMG  232 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g  232 (507)
                      .|.||||.|+..|+.+.++.|++++.++ + .+..|.||||.|+..|+              +.+|.+|+||||+||.+|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCc-c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            5999999999999999999999999987 3 35789999999999987              678999999999999999


Q ss_pred             CHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCc
Q 039657          233 VTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPR  312 (507)
Q Consensus       233 ~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~  312 (507)
                      +.++|++|++++                 +.+|.+|.+|+||||+|+..|+.+++++               .++   ..
T Consensus        82 ~~~~v~~Ll~~g-----------------a~~~~~d~~g~tpL~~A~~~~~~~~v~~---------------Ll~---~g  126 (239)
T 1ycs_B           82 HTEIVKFLVQFG-----------------VNVNAADSDGWTPLHCAASCNNVQVCKF---------------LVE---SG  126 (239)
T ss_dssp             CHHHHHHHHHHT-----------------CCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------HHH---TT
T ss_pred             CHHHHHHHHHcC-----------------CCCCccCCCCCCHHHHHHHcCCHHHHHH---------------HHH---cC
Confidence            999776666653                 4579999999999999999999887632               111   23


Q ss_pred             cccccccCCCC-Ccccccc
Q 039657          313 HFFTRFNDNGK-TPKEVFT  330 (507)
Q Consensus       313 ~~~~~~N~~G~-Tpldl~~  330 (507)
                      .+.+.+|..|. ||++++.
T Consensus       127 a~~~~~~~~~~~t~l~~a~  145 (239)
T 1ycs_B          127 AAVFAMTYSDMQTAADKCE  145 (239)
T ss_dssp             CCTTCCCSSSCCCHHHHCC
T ss_pred             CCcceecCCCCcchHHHHH
Confidence            45567777766 9999883

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.70  E-value=5.4e-17  Score=138.61  Aligned_cols=81  Identities=22%  Similarity=0.276  Sum_probs=72.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      |..|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..++              +.+|.+|+||||+|+.
T Consensus        32 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~  110 (126)
T 1n0r_A           32 DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR  110 (126)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            557899999999999999999999998887 8889999999999998887              6688999999999999


Q ss_pred             cCCHHHHHHHHhhCCc
Q 039657          231 MGVTEMVEQILDTFPA  246 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~  246 (507)
                      .|+.+++++|++++++
T Consensus       111 ~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          111 NGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHHTCC
T ss_pred             cCcHHHHHHHHHcCCC
Confidence            9999999999888764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.70  E-value=2.3e-18  Score=160.10  Aligned_cols=139  Identities=9%  Similarity=-0.004  Sum_probs=104.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC------------------cccCCCCCCccchhh
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN------------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~------------------~~~d~~g~TpLH~Aa  229 (507)
                      +.++||.||+.|+.+.++.+++.+++.  ..|..|+||||+|+..++                  +.+|.+|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            678999999999999999999987653  223789999999998764                  788999999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCC-cHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGN-SALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKK  308 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~Gn-TpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~  308 (507)
                      ..|+.++.+.+-       ++++|++.|    +.+|.+|..|+ ||||+|+..+..+.-              ..+.++.
T Consensus        84 ~~~~~~~~~~~~-------iv~~Ll~~G----adin~~d~~g~ttpLh~A~~~~~~~~~--------------~~~iv~~  138 (186)
T 3t8k_A           84 QGGGNDITGTTE-------LCKIFLEKG----ADITALYKPYKIVVFKNIFNYFVDENE--------------MIPLYKL  138 (186)
T ss_dssp             HHCTTCHHHHHH-------HHHHHHHTT----CCSSSCBGGGTBCTTGGGGGCCSCHHH--------------HHHHHHH
T ss_pred             HcCCcchhhHHH-------HHHHHHHCC----CCCCccCCCcCchHHHHHHHcCCChhh--------------HHHHHHH
Confidence            999843211110       556666666    67899999999 999999996653210              0001111


Q ss_pred             c-C-CccccccccCCCCCccccccccc
Q 039657          309 S-M-PRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       309 ~-~-~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      + . .+.+++.+|++|+||++++.+..
T Consensus       139 Ll~~~gad~~~~d~~G~TpL~~A~~~~  165 (186)
T 3t8k_A          139 IFSQSGLQLLIKDKWGLTALEFVKRCQ  165 (186)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHTTT
T ss_pred             HHHhcCCCCcccCCCCCCHHHHHHHcC
Confidence            1 1 45678999999999999998764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.70  E-value=1.9e-17  Score=135.15  Aligned_cols=85  Identities=29%  Similarity=0.356  Sum_probs=68.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhCCc
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPA  246 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~  246 (507)
                      +|+||||+||..|+.++++.|++.++++ +.+|.+                   |+||||+|+.+|+.+++++|++.+  
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~-------------------g~t~L~~A~~~~~~~~v~~Ll~~g--   58 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKN-------------------GRTPLHLAARNGHLEVVKLLLEAG--   58 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT-------------------SCCHHHHHHHTTCHHHHHHHHHTT--
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCC-------------------CCCHHHHHHHcCCHHHHHHHHHcC--
Confidence            4899999999999999999999999987 555555                   455555599999999666666553  


Q ss_pred             hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          247 NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       247 ~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                                     +.++.+|.+|+||||+|+..|+.++++
T Consensus        59 ---------------a~~~~~d~~g~t~l~~A~~~~~~~~~~   85 (93)
T 1n0q_A           59 ---------------ADVNAKDKNGRTPLHLAARNGHLEVVK   85 (93)
T ss_dssp             ---------------CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ---------------CCCCccCCCCCCHHHHHHHcCCHHHHH
Confidence                           457899999999999999999987753

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.69  E-value=1.3e-17  Score=161.25  Aligned_cols=102  Identities=17%  Similarity=0.182  Sum_probs=89.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccC-CCCCCccchhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQS-GRKETPMLIAA  229 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d-~~g~TpLH~Aa  229 (507)
                      +..|.||||+||..|+.++|+.|++ +.++ +.+|.+|+||||+||..|+              +.+| ..|+||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4579999999999999999999999 7776 8899999999999999998              5666 88999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHR  285 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~  285 (507)
                      .+|+.++|++|++++                 +.+|.+|..|+||||+|+..++..
T Consensus       120 ~~g~~~~v~~Ll~~g-----------------a~~~~~d~~g~t~l~~A~~~~~~~  158 (244)
T 3ui2_A          120 GYVRPEVVEALVELG-----------------ADIEVEDERGLTALELAREILKTT  158 (244)
T ss_dssp             HTTCHHHHHHHHHTT-----------------CCTTCCCTTCCCHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHCC-----------------CCCCCCCCCCCcHHHHHHHHHhcc
Confidence            999999666666553                 457899999999999999876644

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.67  E-value=5.4e-17  Score=141.98  Aligned_cols=78  Identities=8%  Similarity=-0.045  Sum_probs=68.9

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      +|..|+||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|+
T Consensus        39 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  117 (137)
T 3c5r_A           39 KDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD  117 (137)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            3667999999999999999999999999987 8899999999999999887              788999999999999


Q ss_pred             hcCCHHHHHHHHh
Q 039657          230 RMGVTEMVEQILD  242 (507)
Q Consensus       230 ~~g~~~iv~~Ll~  242 (507)
                      ..++.+++++|.+
T Consensus       118 ~~~~~~~l~~l~~  130 (137)
T 3c5r_A          118 DESMKSLLLLPEK  130 (137)
T ss_dssp             CHHHHHHHSCC--
T ss_pred             hccHHHHHhhccc
Confidence            9999996655444

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.66  E-value=6.3e-17  Score=166.29  Aligned_cols=134  Identities=15%  Similarity=0.110  Sum_probs=94.0

Q ss_pred             CCCChHHHHHHHc-CCHHHHHHHhhhCCccccccc--CCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          166 EKMDNKILLAAKI-GVTEMVDRFLKSYPAVIQELN--TSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       166 ~~g~TpLh~Aa~~-G~~~~v~~Ll~~~~~~~~~~d--~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      ..+.||||.|+.. |+.++++.|++.++++ +..|  .+|+||||+|+..++              +.+|.+|+||||+|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            3567999999999 9999999999999997 7777  899999999999987              78899999999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhc
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKK  308 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~  308 (507)
                      +..|+.++|++||++             +    +.++.+|.+|+||||+|+..|+.+++.+    |         .  +.
T Consensus       276 ~~~g~~~~v~~LL~~-------------G----ad~~~~d~~G~TpL~~A~~~g~~~iv~l----L---------l--~~  323 (368)
T 3jue_A          276 TILGHTGLACLFLKR-------------G----ADLGARDSEGRDPLTIAMETANADIVTL----L---------R--LA  323 (368)
T ss_dssp             HHHTCHHHHHHHHHT-------------T----CCTTCCCTTSCCHHHHHHHTTCHHHHHH----H---------H--HH
T ss_pred             HHcCcHHHHHHHHHC-------------c----CCCCCcCCCCCCHHHHHHHCCCHHHHHH----H---------H--Hc
Confidence            999999966666655             3    4579999999999999999999887632    0         0  00


Q ss_pred             cCCccccccccCCCCCcccccccc
Q 039657          309 SMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       309 ~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      ..........+..+.|+++++...
T Consensus       324 ~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          324 KMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HC----------------------
T ss_pred             CCCcccccccCCCCCCHHHHHHHH
Confidence            111222345677889999998764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.65  E-value=9.2e-17  Score=160.62  Aligned_cols=104  Identities=13%  Similarity=0.079  Sum_probs=90.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCccccc------ccCCCCcHHHHHHHc---CC--------------cccCCCCCC
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQE------LNTSEKNLVLLTFEK---KN--------------AQQSGRKET  223 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~------~d~~G~tpLh~A~~~---~~--------------~~~d~~g~T  223 (507)
                      .+.++||.|+..|+.+.|+.|++.++++ +.      .|..|+||||+|+..   ++              +.+|.+|+|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~T  228 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT  228 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence            3567899999999999999999999997 44      689999999999987   43              678999999


Q ss_pred             ccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          224 PMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       224 pLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      |||+|+.+|+.++|++|++++                 +.++.+|.+|+||||+|+..|+.++++
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~g-----------------ad~~~~d~~G~TpL~~A~~~~~~~iv~  276 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGR-----------------ALVGTVNEAGETALDIARKKHHKECEE  276 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-----------------CCCSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-----------------CCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999666666553                 457999999999999999999987753

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.65  E-value=4.7e-16  Score=135.99  Aligned_cols=80  Identities=19%  Similarity=0.127  Sum_probs=73.5

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      .+|..|+||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|
T Consensus        42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A  120 (136)
T 2jab_A           42 AKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS  120 (136)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHH
Confidence            34667999999999999999999999999997 8899999999999999887              67899999999999


Q ss_pred             hhcCCHHHHHHHHhh
Q 039657          229 ARMGVTEMVEQILDT  243 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~  243 (507)
                      +.+|+.+++++|++.
T Consensus       121 ~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A          121 IGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHTTCHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHHc
Confidence            999999988888865

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.65  E-value=5.8e-18  Score=174.56  Aligned_cols=143  Identities=12%  Similarity=0.081  Sum_probs=97.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhhCCccccc--ccCCCCcHHHHHH-HcCC-------cccCCCCCCccchhhhcCCHHHHH
Q 039657          169 DNKILLAAKIGVTEMVDRFLKSYPAVIQE--LNTSEKNLVLLTF-EKKN-------AQQSGRKETPMLIAARMGVTEMVE  238 (507)
Q Consensus       169 ~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~--~d~~G~tpLh~A~-~~~~-------~~~d~~g~TpLH~Aa~~g~~~iv~  238 (507)
                      .||||+||..|+.++|+.|++.++++ +.  .|.+|+||||+|+ ..|+       -.....|.||||+|+.+|+.++|+
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCccchHHHHHHHCCCHHHHH
Confidence            89999999999999999999999987 55  8899999999999 9998       122345899999999999999999


Q ss_pred             HHHhhCCc-----------------h-----------HHHHHHHhccccc--------------ccc--cccccCCCCcH
Q 039657          239 QILDTFPA-----------------N-----------QYLQALLNRKILG--------------ESI--FRQVDSQGNSA  274 (507)
Q Consensus       239 ~Ll~~~~~-----------------~-----------~vv~~Ll~~~~~~--------------~~~--in~~D~~GnTp  274 (507)
                      +|++++++                 .           .+++.|+.++...              ...  ....++.++||
T Consensus       243 lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~  322 (376)
T 2aja_A          243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL  322 (376)
T ss_dssp             HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred             HHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHH
Confidence            99998654                 0           0123333332110              001  12345678999


Q ss_pred             HHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          275 LHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       275 LHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      ||+|+..|+.+++++                   +.+  ....++..|+||.+.+...+
T Consensus       323 L~~A~~~g~~e~v~l-------------------Ll~--~~~v~~~~~~~~~~~~~~~~  360 (376)
T 2aja_A          323 LRLALRLGNQGACAL-------------------LLS--IPSVLALTKANNYYINETGG  360 (376)
T ss_dssp             HHHHHHHTCTTHHHH-------------------HTT--SHHHHHSCC-----------
T ss_pred             HHHHHHcCcHHHHHH-------------------HHc--ChHHHHHHHHhccccccccc
Confidence            999999999988642                   111  11467778889888776553

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.64  E-value=2.2e-16  Score=133.73  Aligned_cols=93  Identities=18%  Similarity=0.163  Sum_probs=81.5

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      +|++|+||||+||..|+.++++.|++.++++ +.+|..|+||||+|+..++              +.+|.+|+||||+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            4778999999999999999999999999997 8899999999999999887              678999999999999


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcH
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSA  274 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTp  274 (507)
                      ..|+.+++++|++++                 +.+|.+|..|.||
T Consensus        84 ~~~~~~~~~~Ll~~g-----------------a~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKG-----------------ADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHTTS-----------------SSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHHcC-----------------CCCCcCCcccccc
Confidence            999999666666554                 4578999999987

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.64  E-value=1.1e-16  Score=160.00  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=78.3

Q ss_pred             CCCCChHHHHHHHc---CCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          165 TEKMDNKILLAAKI---GVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       165 d~~g~TpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      +..|+||||+||..   |+.++++.|++.++++ +.+|.+|+||||+|+..|+              +.+|.+|+||||+
T Consensus       187 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~  265 (301)
T 2b0o_E          187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI  265 (301)
T ss_dssp             CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHH
T ss_pred             CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            66799999999997   8999999999999997 8899999999999999987              7889999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCC
Q 039657          228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDH  284 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~  284 (507)
                      |+..|+.+++++|+++             +    +      ..|+||||+|++.|+.
T Consensus       266 A~~~~~~~iv~~Ll~~-------------g----a------~~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          266 ARKKHHKECEELLEQA-------------Q----A------GTFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHTCHHHHHHHHHH-------------H----H------HTTSSCCC--------
T ss_pred             HHHcCCHHHHHHHHHh-------------c----C------CCCCChhHHHHhcCCc
Confidence            9999999966666654             3    1      1589999999999873

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.62  E-value=1.6e-16  Score=150.61  Aligned_cols=83  Identities=10%  Similarity=0.052  Sum_probs=69.1

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhh-CCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKS-YPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      .+|..|+||||+||..|+.++|+.|++. +.++ +.+|.+|+||||+|+..|+              +.+|.+|+||||+
T Consensus       101 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  179 (222)
T 3ehr_A          101 GLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM  179 (222)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHH
Confidence            3466799999999999999999999998 7776 8999999999999999987              7889999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCc
Q 039657          228 AARMGVTEMVEQILDTFPA  246 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~  246 (507)
                      |+..|+.++++.|++....
T Consensus       180 A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          180 ATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             CCSHHHHHHHC--------
T ss_pred             hcchhHHHHHHHHhccchh
Confidence            9999999988887776554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.61  E-value=1.5e-15  Score=123.70  Aligned_cols=65  Identities=26%  Similarity=0.325  Sum_probs=52.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHH
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQIL  241 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll  241 (507)
                      +.+|..|+||||+|+..|+.++++.|++.++++ +.+|.+                   |+||||+|+..|+.+++++|+
T Consensus        29 n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~-------------------g~t~l~~A~~~~~~~~~~~Ll   88 (93)
T 1n0q_A           29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKN-------------------GRTPLHLAARNGHLEVVKLLL   88 (93)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT-------------------SCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCC-------------------CCCHHHHHHHcCCHHHHHHHH
Confidence            344678999999999999999999999999987 455555                   555555599999999888888


Q ss_pred             hhCCc
Q 039657          242 DTFPA  246 (507)
Q Consensus       242 ~~~~~  246 (507)
                      +++++
T Consensus        89 ~~ga~   93 (93)
T 1n0q_A           89 EAGAY   93 (93)
T ss_dssp             HTTCC
T ss_pred             HcCCC
Confidence            87653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.60  E-value=1e-15  Score=131.35  Aligned_cols=73  Identities=11%  Similarity=0.084  Sum_probs=64.1

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      .+|..|+||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|
T Consensus        35 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           35 RTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            33667999999999999999999999999997 8899999999999999887              67899999999999


Q ss_pred             hhcCCHHH
Q 039657          229 ARMGVTEM  236 (507)
Q Consensus       229 a~~g~~~i  236 (507)
                      +..+..++
T Consensus       114 ~~~~~~~l  121 (123)
T 3aaa_C          114 DNQAIKAL  121 (123)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            76555553

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.60  E-value=1.3e-15  Score=150.59  Aligned_cols=104  Identities=11%  Similarity=0.082  Sum_probs=89.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcc-----cccccCCCCcHHHHHHHc---CC--------------cccCCCCCCcc
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAV-----IQELNTSEKNLVLLTFEK---KN--------------AQQSGRKETPM  225 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~-----~~~~d~~G~tpLh~A~~~---~~--------------~~~d~~g~TpL  225 (507)
                      ..++||.|+..|+.+.++.+++.++++     ++..|..|+||||+|+..   ++              +.+|.+|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            457999999999999999999999886     244589999999999998   54              67899999999


Q ss_pred             chhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          226 LIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       226 H~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      |+|+.+|+.++|++|++++                 ++++.+|.+|+||||+|+..|+.++++
T Consensus       210 h~A~~~g~~~~v~~Ll~~g-----------------ad~~~~d~~g~tpL~~A~~~~~~~~v~  255 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGK-----------------ASIEIANESGETPLDIAKRLKHEHCEE  255 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcC-----------------CCCCCccCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999666666553                 457999999999999999999988763

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.59  E-value=1.7e-15  Score=127.83  Aligned_cols=89  Identities=22%  Similarity=0.306  Sum_probs=70.7

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHH
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQIL  241 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll  241 (507)
                      ...|.+|.||||+||..|+.++++.|++.++++ +.+|..                   |+||||+|+.+|+.+++++|+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~-------------------g~tpLh~A~~~~~~~~v~~Ll   77 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKN-------------------GSTPLHLAARNGHLEVVKLLL   77 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT-------------------CCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCC-------------------CCCHHHHHHHcCCHHHHHHHH
Confidence            445788999999999999999999999999887 444555                   555555599999999666666


Q ss_pred             hhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          242 DTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       242 ~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      ++             +    +.++.+|..|+||||+|+..|+.+++
T Consensus        78 ~~-------------g----a~~~~~d~~g~tpl~~A~~~~~~~~~  106 (110)
T 2zgd_A           78 EA-------------G----ADVXAQDKFGKTAFDISIDNGNEDLA  106 (110)
T ss_dssp             HT-------------T----CCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             Hc-------------C----CCccccccCCCcHHHHHHHcCCHHHH
Confidence            55             3    45789999999999999999997765

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.58  E-value=1.9e-15  Score=161.45  Aligned_cols=103  Identities=14%  Similarity=0.107  Sum_probs=90.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhhCCcccccc------cCCCCcHHHHHHH---cCC--------------cccCCCCCCc
Q 039657          168 MDNKILLAAKIGVTEMVDRFLKSYPAVIQEL------NTSEKNLVLLTFE---KKN--------------AQQSGRKETP  224 (507)
Q Consensus       168 g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~------d~~G~tpLh~A~~---~~~--------------~~~d~~g~Tp  224 (507)
                      ..+.||.|+..|+.++|+.|++.++++ +..      |..|+||||+||.   .|+              +.+|.+|+||
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp  210 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  210 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred             cHHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence            447899999999999999999999987 555      8899999999976   554              7899999999


Q ss_pred             cchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          225 MLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       225 LH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      ||+||.+|+.++|++||++             |    +++|.+|.+|+||||+|+..|+.++++
T Consensus       211 Lh~A~~~g~~~~v~~Ll~~-------------g----a~~~~~d~~g~tpl~~A~~~~~~~~~~  257 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLKG-------------R----ALVGTVNEAGETALDIARKKHHKECEE  257 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHHT-------------C----CCCSCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHc-------------C----CCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999966666555             4    568999999999999999999988765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.57  E-value=2.5e-15  Score=145.19  Aligned_cols=74  Identities=15%  Similarity=0.166  Sum_probs=67.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhh
Q 039657          166 EKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDT  243 (507)
Q Consensus       166 ~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~  243 (507)
                      ..|+||||+||..|+.++|+.|++.++++ +.+|.+|+||||+|+..++   +..+.||||+|+..|+.+++++|++.
T Consensus       109 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~---~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          109 RGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK---TTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             SSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT---TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh---ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            56999999999999999999999999997 8899999999999998654   36789999999999999977777765

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.57  E-value=2.2e-15  Score=138.66  Aligned_cols=74  Identities=15%  Similarity=0.162  Sum_probs=67.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhh
Q 039657          166 EKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDT  243 (507)
Q Consensus       166 ~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~  243 (507)
                      ..|+||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|++.++.   ..+.|||++|+..|+.++++.|.++
T Consensus       108 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~---~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          108 RGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT---TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             SSSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT---CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC---cccccHHHHHHHcCHHHHHHHHHHh
Confidence            57999999999999999999999999997 88999999999999987654   4678999999999999988888765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.50  E-value=4.3e-14  Score=145.12  Aligned_cols=103  Identities=11%  Similarity=0.089  Sum_probs=72.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhc
Q 039657          166 EKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARM  231 (507)
Q Consensus       166 ~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~  231 (507)
                      ..|.||||+||..|+.++|+.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|+..
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~  311 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET  311 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC
Confidence            57999999999999999999999999997 8999999999999999987              77899999999999999


Q ss_pred             CCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCC
Q 039657          232 GVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGD  283 (507)
Q Consensus       232 g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~  283 (507)
                      |+.++|++|++....              .......+..|.|+|+++.....
T Consensus       312 g~~~iv~lLl~~~~~--------------~~~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          312 ANADIVTLLRLAKMR--------------EAEAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             TCHHHHHHHHHHHC--------------------------------------
T ss_pred             CCHHHHHHHHHcCCC--------------cccccccCCCCCCHHHHHHHHHh
Confidence            999977777765332              12334567788999998876543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.49  E-value=3.4e-14  Score=140.29  Aligned_cols=82  Identities=17%  Similarity=0.203  Sum_probs=74.2

Q ss_pred             ccCCCCCChHHHHHHHc---CCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCc
Q 039657          162 QSGTEKMDNKILLAAKI---GVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETP  224 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~Tp  224 (507)
                      +..|..|+||||+||..   |+.++++.|++.++++ +.+|.+|+||||+|+..|+              +.+|.+|+||
T Consensus       163 ~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp  241 (278)
T 1dcq_A          163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP  241 (278)
T ss_dssp             SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCH
Confidence            34477899999999999   9999999999999997 8999999999999999988              7899999999


Q ss_pred             cchhhhcCCHHHHHHHHhhC
Q 039657          225 MLIAARMGVTEMVEQILDTF  244 (507)
Q Consensus       225 LH~Aa~~g~~~iv~~Ll~~~  244 (507)
                      ||+|+..|+.++|++|++++
T Consensus       242 L~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          242 LDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcC
Confidence            99999999999776666653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.44  E-value=3.6e-15  Score=153.64  Aligned_cols=106  Identities=17%  Similarity=0.175  Sum_probs=82.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcc--cccccCCCCcHHHHHHHcCC----------c-------ccCCCCCCcc
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAV--IQELNTSEKNLVLLTFEKKN----------A-------QQSGRKETPM  225 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~--~~~~d~~G~tpLh~A~~~~~----------~-------~~d~~g~TpL  225 (507)
                      +.+++||||+||+.|+.++|+.|++.++..  ....|..|+||||+||..|+          .       ..+.+ +|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            445779999999999999999999998621  12456678899999999998          1       11223 8999


Q ss_pred             chhhhcCCHHHHHHHHhhCCchHHHHHHHhccccccccccc--ccCCCCcHHHHHH-hcCCCcccc
Q 039657          226 LIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQ--VDSQGNSALHLAA-KFGDHRPWL  288 (507)
Q Consensus       226 H~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~--~D~~GnTpLHlAa-~~g~~~~v~  288 (507)
                      |+||.+|+.++|++|++++++                 ++.  +|.+|+||||+|+ ..|+.++++
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~-----------------~~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPT-----------------EATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGG-----------------GHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHcCCc-----------------cchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            999999999977777766554                 454  7888999999999 999988764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.43  E-value=7.2e-14  Score=118.07  Aligned_cols=95  Identities=19%  Similarity=0.142  Sum_probs=74.3

Q ss_pred             cccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhccccccc
Q 039657          197 ELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGES  262 (507)
Q Consensus       197 ~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~  262 (507)
                      .+|.+|+||||+|+..++              +.+|..|+||||+|+..|+.+++++|+++             +    +
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-------------g----~   66 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-------------G----A   66 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT-------------T----C
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-------------C----C
Confidence            478999999999999887              67899999999999999999966665554             3    4


Q ss_pred             ccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcc
Q 039657          263 IFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPK  326 (507)
Q Consensus       263 ~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpl  326 (507)
                      .++.+|..|+||||+|+..|+.+++++             +  ++   ...+++.++..|.||.
T Consensus        67 ~~~~~d~~g~tpl~~A~~~~~~~~~~~-------------L--l~---~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           67 DVNARSKDGNTPEHLAKKNGHHEIVKL-------------L--DA---KGADVNARSWGSSHHH  112 (115)
T ss_dssp             CTTCCCTTCCCTTHHHHTTTCHHHHHH-------------H--HT---TSSSHHHHSCCCC---
T ss_pred             CCcccCCCCCCHHHHHHHCCCHHHHHH-------------H--HH---cCCCCCcCCccccccc
Confidence            578999999999999999998776531             0  11   2345678888888874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.36  E-value=1.1e-12  Score=110.40  Aligned_cols=58  Identities=21%  Similarity=0.231  Sum_probs=47.1

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHH
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQI  240 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~L  240 (507)
                      .+|..|+||||+||..|+.++++.|++.++++ +.+|.+|+||                   ||+|+.+|+.+++++|
T Consensus        52 ~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tp-------------------l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           52 AKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTA-------------------FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH-------------------HHHHHHHTCHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcH-------------------HHHHHHcCCHHHHHHh
Confidence            34667999999999999999999999999987 5555555555                   5559999999977765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	507
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.004

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 16/99 (16%)

Query: 223 TPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG 282
            P+  A        V+++L + P+       L +K          D  G   LH +  F 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSL------LLQK----------DQDGRIPLHWSVSFQ 45

Query: 283 DHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDN 321
            H       + ++      +      +      +  N  
Sbjct: 46  AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 84

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 20/143 (13%)

Query: 222 ETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKF 281
           +T + +A        ++ +L  F A       L+ +          +  G +ALHLAA  
Sbjct: 10  DTALHLAVIHQHEPFLDFLLG-FSAGH---EYLDLQ----------NDLGQTALHLAAIL 55

Query: 282 GDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVKEGK 341
           G+           ++          ++               T   V  +      ++  
Sbjct: 56  GEASTV------EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

Query: 342 EWLPKTSESCSVVAALIATVAFA 364
           +     S+ C+   +       +
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDS 132

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 22/139 (15%)

Query: 145 SHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKN 204
                   H    N  +       +   +        E V + L  Y A     N + K 
Sbjct: 22  ILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYA---HYNRNAKQ 78

Query: 205 LVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIF 264
           L      KK  +     E    +AA  G +  ++           L  LL      E + 
Sbjct: 79  L-WSDAHKKGIK----SEVICFVAAITGCSSALD----------TLCLLLTS---DEIV- 119

Query: 265 RQVDSQGNSALHLAAKFGD 283
           + + ++   A  LAA+ G 
Sbjct: 120 KVIQAENYQAFRLAAENGH 138

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 22/249 (8%), Positives = 58/249 (23%), Gaps = 35/249 (14%)

Query: 2   VNSVNENGLTPLHILASKPNAFESSSRLGLFDSIIYCCIDLSKKDDGEDQLFPPNYATCV 61
           V  +         + A   +             ++    +L+  +          +A  +
Sbjct: 119 VKVIQAENYQAFRLAAENGHL-----------HVLNRLCELAPTEIMAMIQAENYHAFRL 167

Query: 62  LLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQV----MCELVQHASLYKYEDNGPK 117
                 +  +  +  L       + + +  + +           ++    L         
Sbjct: 168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF--LLDCPVMLAY 225

Query: 118 RRNSGPKEDEEAFSVSETLPVPDTGEIS---HQNKSTNHKKIENGSAQSGTEKMDNKILL 174
                 +  E+  +      V    E+      +       +   S       M   ++ 
Sbjct: 226 AEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIR 285

Query: 175 AAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVT 234
                + + + RFL S P +                    A   G     + +A R+G  
Sbjct: 286 RNDEVLLDDI-RFLLSIPGIKAL--------------APTATIPGDANELLRLALRLGNQ 330

Query: 235 EMVEQILDT 243
                +L  
Sbjct: 331 GACALLLSI 339

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 27/229 (11%), Positives = 66/229 (28%), Gaps = 34/229 (14%)

Query: 74  VLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGPKEDEEAFSVS 133
           ++ L +        +K+       +         L  +   G                 +
Sbjct: 54  IVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113

Query: 134 ETLPVPDTGEISHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPA 193
               V     +  +  + N ++      +   +     ++ AA+ G  E++   L    A
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 194 VIQELNTSEKNLVLLTFEKKNAQ------------------QSGRKETPMLIAARMGVTE 235
            +   +   +N ++      +                    +  R +TP+++A       
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233

Query: 236 MVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDH 284
           +V+++L+           +N            DS G +AL LA +    
Sbjct: 234 LVQRLLEQEHIE------INDT----------DSDGKTALLLAVELKLK 266

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 24/145 (16%)

Query: 217 QSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALH 276
            + + ETP+ +AAR G TE+ + +L         +A +N K               + LH
Sbjct: 29  SNVKVETPLHMAARAGHTEVAKYLLQN-------KAKVNAK----------AKDDQTPLH 71

Query: 277 LAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDL 336
            AA+ G      L    L                P H   R          +  E  +  
Sbjct: 72  CAARIGHTNMVKL----LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC 127

Query: 337 V-KEGKEWLPKTSESCS--VVAALI 358
           + K+G   L   ++     V   L+
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLL 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	507
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.92
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.86
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.85
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.83
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.83
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.81
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.81
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.8
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.8
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.79
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.79
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.78
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.77
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.76
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.76
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.76
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.76
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.74
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.73
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.73
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.73
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.71
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.68
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.62
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.57
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.56
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.55
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.55
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.51

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.6e-25  Score=214.47  Aligned_cols=135  Identities=19%  Similarity=0.145  Sum_probs=111.4

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC----------------------------
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN----------------------------  214 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~----------------------------  214 (507)
                      .+|..|.||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..++                            
T Consensus        40 ~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  118 (255)
T d1oy3d_          40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD  118 (255)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------
T ss_pred             CcCCCCCCccchHHhhcccccccccccccccc-cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhh
Confidence            44678999999999999999999999999987 8899999999999987664                            


Q ss_pred             ---------------------------------cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccc
Q 039657          215 ---------------------------------AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGE  261 (507)
Q Consensus       215 ---------------------------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~  261 (507)
                                                       +.+|.+|+||||+||.+|+.++|++|++.+++               
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~---------------  183 (255)
T d1oy3d_         119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---------------  183 (255)
T ss_dssp             -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---------------
T ss_pred             hcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccc---------------
Confidence                                             57899999999999999999988888777554               


Q ss_pred             cccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccccc
Q 039657          262 SIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       262 ~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                       ..+.++..|+||||+|++.|+.+++++             +  ++   ...+++.+|++|+||++++...
T Consensus       184 -~~~~~~~~g~TpL~~A~~~~~~~~v~~-------------L--l~---~gadin~~d~~g~t~L~~A~~~  235 (255)
T d1oy3d_         184 -LNKPEPTCGRTPLHLAVEAQAASVLEL-------------L--LK---AGADPTARMYGGRTPLGSALLR  235 (255)
T ss_dssp             -TTCCCTTTCCCHHHHHHHTTCHHHHHH-------------H--HH---TTCCTTCCCTTSCCHHHHHHTS
T ss_pred             -ccccccccccccccccccccHHHHHHH-------------H--HH---CCCCCCCCCCCCCCHHHHHHHC
Confidence             234567899999999999999877532             1  12   2346688999999999997554

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-24  Score=205.15  Aligned_cols=106  Identities=14%  Similarity=0.063  Sum_probs=93.1

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      .+|..|.||||+|+..|+.++++.|++.+.++ +.+|..|.||||+|+..++              +.+|.+|+||||+|
T Consensus        98 ~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~A  176 (223)
T d1uoha_          98 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA  176 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccc
Confidence            34778999999999999999999999999987 8899999999999999987              78999999999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      |..|+.++|++||++             |    ++++.+|.+|+||||+|+ .|+.+++
T Consensus       177 a~~g~~~~v~~LL~~-------------G----ad~~~~d~~g~tpl~~A~-~~~~~i~  217 (223)
T d1uoha_         177 CDEERVEEAKLLVSQ-------------G----ASIYIENKEEKTPLQVAK-GGLGLIL  217 (223)
T ss_dssp             HHTTCHHHHHHHHHT-------------T----CCSCCCCTTSCCHHHHCC-TTHHHHH
T ss_pred             cccCcHHHHHHHHHC-------------C----CCCCCCCCCCCCHHHHHH-CCCHHHH
Confidence            999999966666655             3    567999999999999984 5766654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=1.9e-23  Score=201.59  Aligned_cols=122  Identities=15%  Similarity=0.147  Sum_probs=95.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC---------------------------
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN---------------------------  214 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~---------------------------  214 (507)
                      |.+|.+|+||||+|+..|+.++|+.|+++++++ +.+|.+|+||||+|+..++                           
T Consensus        68 n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  146 (277)
T d2fo1e1          68 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA  146 (277)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred             cccCCCCCeeecccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchh
Confidence            444677889999999999999999999888886 7788888999998887765                           


Q ss_pred             ----------------------------------cccCCCCCCccchhhhcCCHHHHHHHHhhCCc--------------
Q 039657          215 ----------------------------------AQQSGRKETPMLIAARMGVTEMVEQILDTFPA--------------  246 (507)
Q Consensus       215 ----------------------------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~--------------  246 (507)
                                                        +..+.+|+||||+++..|+.++++.++...+.              
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~  226 (277)
T d2fo1e1         147 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  226 (277)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             HHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHH
Confidence                                              34556677777777777777777766554332              


Q ss_pred             -------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          247 -------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       247 -------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                             ..++++|++.|    +++|.+|.+|+||||+|++.|+.++++
T Consensus       227 ~A~~~g~~~iv~~Ll~~g----adin~~d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         227 LAAQEGRIEVVMYLIQQG----ASVEAVDATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTT----CCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCc----CCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence                   12577788777    678999999999999999999988764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.7e-22  Score=204.16  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=99.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAAR  230 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~  230 (507)
                      +..|.||||.++..++.++...++...... ...+.+|.||||+|+..+.              +..|..|.||||.|+.
T Consensus       195 ~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~  273 (408)
T d1n11a_         195 AWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ  273 (408)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCcchhhhccchhhhhhhhhhccccc-cccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhh
Confidence            333444444444444444444443333332 3334445555555555544              5668889999999999


Q ss_pred             cCCHHHHHHHHhhCCc--------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccC
Q 039657          231 MGVTEMVEQILDTFPA--------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLP  290 (507)
Q Consensus       231 ~g~~~iv~~Ll~~~~~--------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~  290 (507)
                      .++.+++++|++.+.+                    ..+++++++.+    ..+|.+|.+|+||||+|++.|+.+++++ 
T Consensus       274 ~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g----~~in~~d~~G~T~Lh~A~~~g~~~iv~~-  348 (408)
T d1n11a_         274 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ----ADVNAKTKLGYSPLHQAAQQGHTDIVTL-  348 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH-
T ss_pred             cCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccc----ccccccCCCCCCHHHHHHHcCCHHHHHH-
Confidence            9999999999988765                    12478888877    7899999999999999999999887632 


Q ss_pred             chhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccccc
Q 039657          291 GAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       291 gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                                    .++   .+.+++.+|++|+||++++.+.
T Consensus       349 --------------Ll~---~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         349 --------------LLK---NGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             --------------HHH---TTCCSCCCCSSSCCHHHHHHHT
T ss_pred             --------------HHH---CCCCCCCCCCCCCCHHHHHHHc
Confidence                          112   2446789999999999999776

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.2e-22  Score=187.80  Aligned_cols=154  Identities=20%  Similarity=0.165  Sum_probs=130.1

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      +..|..|+||||+||..|+.++++.|++..... ...+..+.++++.|+..++              +.+|.+|+||||+
T Consensus        31 ~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~  109 (223)
T d1uoha_          31 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY  109 (223)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhH
Confidence            566899999999999999999999999998887 6778899999999999877              6789999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCc--------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          228 AARMGVTEMVEQILDTFPA--------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~--------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      |+.+|+.+++++|++++.+                    ...+++|...+    ..+|.+|.+|+||||+|+..|+.+++
T Consensus       110 A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~----~~i~~~d~~g~TpL~~Aa~~g~~~~v  185 (223)
T d1uoha_         110 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK----ASTNIQDTEGNTPLHLACDEERVEEA  185 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcccc----ceeeeccCCCCceeccccccCcHHHH
Confidence            9999999999999998766                    12467777776    67999999999999999999998776


Q ss_pred             ccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccccccccccc
Q 039657          288 LLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETHKDLVK  338 (507)
Q Consensus       288 ~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~~~l~~  338 (507)
                      ++               .++   .+.+++.+|++|+||++++...|.+.++
T Consensus       186 ~~---------------LL~---~Gad~~~~d~~g~tpl~~A~~~~~~i~~  218 (223)
T d1uoha_         186 KL---------------LVS---QGASIYIENKEEKTPLQVAKGGLGLILK  218 (223)
T ss_dssp             HH---------------HHH---TTCCSCCCCTTSCCHHHHCCTTHHHHHH
T ss_pred             HH---------------HHH---CCCCCCCCCCCCCCHHHHHHCCCHHHHh
Confidence            32               111   2446789999999999999766655444

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.1e-22  Score=189.27  Aligned_cols=136  Identities=15%  Similarity=0.094  Sum_probs=109.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------------cccCCCC
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------------AQQSGRK  221 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------------~~~d~~g  221 (507)
                      |.+|..|+||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..+.                    .....+|
T Consensus        33 n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  111 (221)
T d1iknd_          33 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG  111 (221)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             ccCCCCCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhccccccccccccccccc
Confidence            445778999999999999999999999999997 8899999999999998876                    4556778


Q ss_pred             CCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhccccccccccc-ccCCCCcHHHHHHhcCCCcccccCchhhhhHHHH
Q 039657          222 ETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQ-VDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEI  300 (507)
Q Consensus       222 ~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~-~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el  300 (507)
                      .||||.|+..|+.+++++|+..++                 .++. .|.+|+||||+|++.|+.+++++           
T Consensus       112 ~t~l~~a~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~G~T~L~~A~~~g~~~~v~~-----------  163 (221)
T d1iknd_         112 HTCLHLASIHGYLGIVELLVSLGA-----------------DVNAQEPCNGRTALHLAVDLQNPDLVSL-----------  163 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTC-----------------CTTCCCTTTCCCHHHHHHHTTCHHHHHH-----------
T ss_pred             chhhhHHhhcCChhheeeecccCc-----------------ccccccccCCCCccccccccccHHHHHH-----------
Confidence            999999999999996666655543                 3444 45689999999999999877531           


Q ss_pred             HHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          301 KWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       301 ~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                        +  +   ..+.+++.+|.+|+||++++....
T Consensus       164 --L--l---~~gad~~~~~~~G~tpl~~A~~~~  189 (221)
T d1iknd_         164 --L--L---KCGADVNRVTYQGYSPYQLTWGRP  189 (221)
T ss_dssp             --H--H---TTTCCSCCCCTTCCCGGGGCTTSS
T ss_pred             --H--H---hcCCcccccCCCCCCHHHHHHHCC
Confidence              1  1   134567899999999999987653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=9.6e-21  Score=177.74  Aligned_cols=134  Identities=18%  Similarity=0.187  Sum_probs=95.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcc-cccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhh
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAV-IQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAA  229 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~-~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa  229 (507)
                      +..|.||+|+|+..+..++++.++..+... ....+..+.||++.++..++              +.+|.+|+||||+|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~  146 (229)
T d1ixva_          67 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA  146 (229)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhh
Confidence            345677777777777777777666665432 24455667777777666654              456778888888888


Q ss_pred             hcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhcc
Q 039657          230 RMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKS  309 (507)
Q Consensus       230 ~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~  309 (507)
                      .+|+.+++++|++.++                ..+|.+|.+|+||||+|++.|+.++++.               .+++ 
T Consensus       147 ~~~~~~~~~~Ll~~~~----------------~~in~~d~~g~TpLh~A~~~~~~~~v~~---------------Ll~~-  194 (229)
T d1ixva_         147 SVGSLKLIELLCGLGK----------------SAVNWQDKQGWTPLFHALAEGHGDAAVL---------------LVEK-  194 (229)
T ss_dssp             HHTCHHHHHHHHTTTC----------------CCSCCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHH-
T ss_pred             hccccccccccccccc----------------ccccccccccCCchhhhcccccHHHHHH---------------HHHh-
Confidence            8888886666665543                4679999999999999999999877631               0111 


Q ss_pred             CCccccccccCCCCCccccccc
Q 039657          310 MPRHFFTRFNDNGKTPKEVFTE  331 (507)
Q Consensus       310 ~~~~~~~~~N~~G~Tpldl~~~  331 (507)
                       .+.+++.+|++|+||++++.+
T Consensus       195 -~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         195 -YGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             -HCCCSCCCCTTSCCTGGGCSC
T ss_pred             -cCCCCCCcCCCCCCHHHHHhh
Confidence             134678999999999999864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.83  E-value=7.1e-21  Score=185.27  Aligned_cols=148  Identities=16%  Similarity=0.142  Sum_probs=114.4

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      .+|.+|+||||+|+.+|+.++|+.|++.+++. ...+..+.+|||.|+..++              +..|.+|.+|+++|
T Consensus        68 ~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a  146 (291)
T d1s70b_          68 YANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA  146 (291)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             ccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccccccchhhcccccCcccccccccCccccccc
Confidence            34667999999999999999999999999886 7778889999999988776              44666777777777


Q ss_pred             hhcCCHHHHHHHHhhCCc-----------------------------------------------hHHHHHHHhcccccc
Q 039657          229 ARMGVTEMVEQILDTFPA-----------------------------------------------NQYLQALLNRKILGE  261 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~-----------------------------------------------~~vv~~Ll~~~~~~~  261 (507)
                      +..++.++++.++.....                                               ..++++|++.+    
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g----  222 (291)
T d1s70b_         147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR----  222 (291)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT----
T ss_pred             cccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccce----
Confidence            777777777776654221                                               01366777666    


Q ss_pred             cccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          262 SIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       262 ~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +.+|.+|.+|+||||+|++.|+.+++++               .++   .+.+++.+|++|+||++++.+.-
T Consensus       223 ~din~~~~~g~TpL~~A~~~g~~~iv~l---------------Ll~---~Gadv~~~d~~G~TaL~~A~e~~  276 (291)
T d1s70b_         223 YDVNIKDYDGWTPLHAAAHWGKEEACRI---------------LVE---NLCDMEAVNKVGQTAFDVADEDI  276 (291)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------HHH---TTCCTTCCCTTSCCTTTSCCSGG
T ss_pred             ecccccccCCCCHHHHHHHcCCHHHHHH---------------HHH---CCCCCCCcCCCCCCHHHHHHHHH
Confidence            6789999999999999999999887642               111   24467889999999999997643

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=7.1e-21  Score=187.81  Aligned_cols=150  Identities=15%  Similarity=0.095  Sum_probs=108.9

Q ss_pred             cccC-CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC------------------cccCCCC
Q 039657          161 AQSG-TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN------------------AQQSGRK  221 (507)
Q Consensus       161 ~~~~-d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~------------------~~~d~~g  221 (507)
                      +|.+ |++|+||||+||..|+.++|+.||+.++++ +.+|..|+||||.||..++                  ..+|..|
T Consensus        99 vn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g  177 (301)
T d1sw6a_          99 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN  177 (301)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             cCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhccccc
Confidence            4444 889999999999999999999999999997 8999999999999997653                  5678999


Q ss_pred             CCccchhhhcCC----HHHHH--------HHHhhCCc------h---------------HHHHHHHhccccccccccccc
Q 039657          222 ETPMLIAARMGV----TEMVE--------QILDTFPA------N---------------QYLQALLNRKILGESIFRQVD  268 (507)
Q Consensus       222 ~TpLH~Aa~~g~----~~iv~--------~Ll~~~~~------~---------------~vv~~Ll~~~~~~~~~in~~D  268 (507)
                      +||||+|+..+.    ..+++        .+++....      +               ..+..+. ........+|.+|
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~in~~D  256 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD-LKWIIANMLNAQD  256 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS-HHHHHHHTTTCCC
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHh-hHHHHhcCccCCC
Confidence            999998886554    33333        33333222      0               0000000 0000013479999


Q ss_pred             CCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccc
Q 039657          269 SQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFT  330 (507)
Q Consensus       269 ~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~  330 (507)
                      .+|+||||+|++.|+.+++++               .++   .+.+++++|++|+||+|.+.
T Consensus       257 ~~G~TpLh~A~~~g~~~iv~~---------------Ll~---~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         257 SNGDTCLNIAARLGNISIVDA---------------LLD---YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHH---------------HHH---TTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHH---------------HHH---CCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999887642               111   24467899999999999873

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.6e-20  Score=171.35  Aligned_cols=148  Identities=18%  Similarity=0.105  Sum_probs=105.6

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC------------------cccCCCCCC
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN------------------AQQSGRKET  223 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~------------------~~~d~~g~T  223 (507)
                      +.+|..|+||||+||..|+.++++.|++.+++. +..+.+|.++++.|...++                  +..+..+.+
T Consensus        34 n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (228)
T d1k1aa_          34 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT  112 (228)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC
T ss_pred             CccCCCCCccceehhcccccccccccccccccc-cccccccccccccccccccccchhhhhhcccccccccccccccccc
Confidence            344678999999999999999999999999887 7888999999999887665                  233334444


Q ss_pred             ccchhhhcCCHHHHHHHHhhCCc---------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcC
Q 039657          224 PMLIAARMGVTEMVEQILDTFPA---------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFG  282 (507)
Q Consensus       224 pLH~Aa~~g~~~iv~~Ll~~~~~---------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g  282 (507)
                      |||.+.........+.|....++                     ..+++.+++.+    ..++.+|..|+||||+|+..|
T Consensus       113 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~----~~~~~~d~~g~t~L~~A~~~g  188 (228)
T d1k1aa_         113 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG----ANVNAQMYSGSSALHSASGRG  188 (228)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCBCTTSCBHHHHHHHHT
T ss_pred             ccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhc----cccccccccCcchHHHHHHcC
Confidence            44444444444444444443332                     01455555555    567899999999999999999


Q ss_pred             CCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccccc
Q 039657          283 DHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       283 ~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      +.+++++               .++.   +.+++.+|.+|+||++++.+.
T Consensus       189 ~~~~v~~---------------Ll~~---Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         189 LLPLVRT---------------LVRS---GADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             CHHHHHH---------------HHHT---TCCTTCCCTTSCCTTTTCSSH
T ss_pred             CHHHHHH---------------HHHC---CCCCCCCCCCCCCHHHHHHhC
Confidence            9887532               1122   345789999999999998654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=1.4e-20  Score=174.07  Aligned_cols=133  Identities=16%  Similarity=0.163  Sum_probs=111.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC------------------------------
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN------------------------------  214 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~------------------------------  214 (507)
                      |++|.||||+||+.|+.++++.|++.++++ +.+|..++++++.++..+.                              
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            557999999999999999999999999997 8899999999999987765                              


Q ss_pred             ------------------cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHH
Q 039657          215 ------------------AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALH  276 (507)
Q Consensus       215 ------------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLH  276 (507)
                                        +.++..|+||||+|+.+|..++++.+++.+.                 .+|.+|.+|+||||
T Consensus        99 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~-----------------~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA-----------------NRDAQDDKDETPLF  161 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-----------------CTTCCCTTCCCHHH
T ss_pred             cccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccc-----------------cccccccccccccc
Confidence                              5688999999999999999996666665543                 46889999999999


Q ss_pred             HHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          277 LAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       277 lAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      +|+..|+.+++++               .++   .+.+++.+|++|+||++++....
T Consensus       162 ~A~~~g~~~~v~~---------------Ll~---~gad~n~~d~~g~Tpl~~A~~~~  200 (209)
T d1ot8a_         162 LAAREGSYEASKA---------------LLD---NFANREITDHMDRLPRDVASERL  200 (209)
T ss_dssp             HHHHTTCHHHHHH---------------HHH---TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             hhccccHHHHHHH---------------HHH---CCCCCCCcCCCCCCHHHHHHHcC
Confidence            9999999887642               111   23456789999999999987653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.1e-20  Score=186.51  Aligned_cols=99  Identities=16%  Similarity=0.161  Sum_probs=72.0

Q ss_pred             CCCCCChHHHHHHHcCCH---HHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------------------
Q 039657          164 GTEKMDNKILLAAKIGVT---EMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------------------  214 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~---~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------------------  214 (507)
                      +|..|+||||.||..|+.   +.++.+++........+|..|+||||+|+..+.                          
T Consensus       136 ~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  215 (301)
T d1sw6a_         136 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP  215 (301)
T ss_dssp             CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcc
Confidence            356788899988887652   122223332222346778888889887664221                          


Q ss_pred             -------------------------------------cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcc
Q 039657          215 -------------------------------------AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRK  257 (507)
Q Consensus       215 -------------------------------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~  257 (507)
                                                           +.+|.+|+||||+||++|+.++|++|++.+             
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G-------------  282 (301)
T d1sw6a_         216 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-------------  282 (301)
T ss_dssp             EEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-------------
T ss_pred             hhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-------------
Confidence                                                 567999999999999999999666666654             


Q ss_pred             cccccccccccCCCCcHHHHHH
Q 039657          258 ILGESIFRQVDSQGNSALHLAA  279 (507)
Q Consensus       258 ~~~~~~in~~D~~GnTpLHlAa  279 (507)
                          +.++.+|++|.||||+|+
T Consensus       283 ----Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         283 ----ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ----CCTTCCCTTSCCGGGGTC
T ss_pred             ----CCCCCCCCCCCCHHHHcC
Confidence                457999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.80  E-value=9.8e-22  Score=198.21  Aligned_cols=126  Identities=16%  Similarity=0.100  Sum_probs=97.2

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCccccccc--CCCCcHHHHHHHcCC-----------------cccCCCCC
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELN--TSEKNLVLLTFEKKN-----------------AQQSGRKE  222 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d--~~G~tpLh~A~~~~~-----------------~~~d~~g~  222 (507)
                      |.+|..|+||||+||++||.++|+.|++.++++ +..|  .+|+||||+||..|+                 +..+.+|.
T Consensus       120 n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~  198 (346)
T d2ajaa1         120 KVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY  198 (346)
T ss_dssp             C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCc
Confidence            444667999999999999999999999999987 5544  569999999999998                 23345678


Q ss_pred             CccchhhhcCCHHHHHHHHhhCCc--------------------------------------------------------
Q 039657          223 TPMLIAARMGVTEMVEQILDTFPA--------------------------------------------------------  246 (507)
Q Consensus       223 TpLH~Aa~~g~~~iv~~Ll~~~~~--------------------------------------------------------  246 (507)
                      ||+|.|+.+||.++|++|++.+++                                                        
T Consensus       199 t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~  278 (346)
T d2ajaa1         199 AFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFY  278 (346)
T ss_dssp             HHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHH
T ss_pred             chhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccch
Confidence            889999999999999999987533                                                        


Q ss_pred             -------------hHHHHHHHhccccc-ccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          247 -------------NQYLQALLNRKILG-ESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       247 -------------~~vv~~Ll~~~~~~-~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                                   -.++++|++.+... ....+..+.+|+||||+|++.||.++++
T Consensus       279 ~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~  334 (346)
T d2ajaa1         279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA  334 (346)
T ss_dssp             HHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHH
T ss_pred             hhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHH
Confidence                         01256666654321 1223456678999999999999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.1e-20  Score=178.28  Aligned_cols=152  Identities=16%  Similarity=0.092  Sum_probs=114.3

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCc--ccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPA--VIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~--~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      .|++|.||||+||++|+.++++.|++.+++  .++.+|.+|+||||+|+..|+              +.+|.+|+||||+
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhh
Confidence            378899999999999999999999998754  457889999999999999988              6789999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCc------h------------H----H--------HHHHHhcccccccccccccCCCCcHHHH
Q 039657          228 AARMGVTEMVEQILDTFPA------N------------Q----Y--------LQALLNRKILGESIFRQVDSQGNSALHL  277 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~------~------------~----v--------v~~Ll~~~~~~~~~in~~D~~GnTpLHl  277 (507)
                      |+..|+.++++.|++....      .            .    .        ..............++.+|.+|.||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            9999999999999887543      0            0    0        0000011112246778999999999999


Q ss_pred             HHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCCCCcccccccc
Q 039657          278 AAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTET  332 (507)
Q Consensus       278 Aa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~  332 (507)
                      |+..|+.++++.             +  ++..  .......+..|.||++++...
T Consensus       165 A~~~~~~~~v~~-------------L--l~~~--~~~~~~~~~~g~TpL~~A~~~  202 (255)
T d1oy3d_         165 AVIHKDAEMVRL-------------L--RDAG--ADLNKPEPTCGRTPLHLAVEA  202 (255)
T ss_dssp             HHHTTCHHHHHH-------------H--HHHT--CCTTCCCTTTCCCHHHHHHHT
T ss_pred             cccccccccccc-------------h--hccc--ccccccccccccccccccccc
Confidence            999999876531             1  1111  111235677899999987544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=4.6e-20  Score=162.36  Aligned_cols=101  Identities=15%  Similarity=0.094  Sum_probs=89.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC----------------------------------
Q 039657          169 DNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN----------------------------------  214 (507)
Q Consensus       169 ~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~----------------------------------  214 (507)
                      .||||.||+.|+.++|+.||+.+++. + .|..|+||||+|+..++                                  
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            49999999999999999999999986 3 69999999999998876                                  


Q ss_pred             -------------cccCCCCCCccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhc
Q 039657          215 -------------AQQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKF  281 (507)
Q Consensus       215 -------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~  281 (507)
                                   +.+|.+|+||||+|+..|+.++|++|++.+                 +++|.+|.+|+||||+|+..
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-----------------ad~~~~d~~g~Tpl~~A~~~  143 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-----------------ADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----------------CCTTCCCTTSCCHHHHHHHT
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccc-----------------cCCcccCCCCCCHHHHHHHc
Confidence                         678999999999999999999666666553                 45799999999999999999


Q ss_pred             CCCcccc
Q 039657          282 GDHRPWL  288 (507)
Q Consensus       282 g~~~~v~  288 (507)
                      |+.++++
T Consensus       144 g~~eiv~  150 (153)
T d1awcb_         144 GNEDLAE  150 (153)
T ss_dssp             TCHHHHH
T ss_pred             CCHHHHH
Confidence            9988764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-19  Score=170.60  Aligned_cols=107  Identities=18%  Similarity=0.150  Sum_probs=89.2

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCc-----ccccccCCCCcHHHHHHHcCC---------------cccCCCCCC
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPA-----VIQELNTSEKNLVLLTFEKKN---------------AQQSGRKET  223 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~-----~~~~~d~~G~tpLh~A~~~~~---------------~~~d~~g~T  223 (507)
                      +|..|.||||.|+..|+.++++.|++.+..     .......+|.||||.|+..++               ...+.+|+|
T Consensus        68 ~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T  147 (221)
T d1iknd_          68 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT  147 (221)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             cccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCC
Confidence            366799999999999999999999987533     334556779999999999887               335678999


Q ss_pred             ccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          224 PMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       224 pLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      |||+|++.|+.++|++|++++                 +++|.+|.+|+||||+|++.++.+++
T Consensus       148 ~L~~A~~~g~~~~v~~Ll~~g-----------------ad~~~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         148 ALHLAVDLQNPDLVSLLLKCG-----------------ADVNRVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTT-----------------CCSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             ccccccccccHHHHHHHHhcC-----------------CcccccCCCCCCHHHHHHHCCCHHHH
Confidence            999999999999776666654                 45799999999999999999987765

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.1e-19  Score=182.49  Aligned_cols=110  Identities=19%  Similarity=0.175  Sum_probs=97.9

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccc
Q 039657          161 AQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPML  226 (507)
Q Consensus       161 ~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH  226 (507)
                      .+..+..|.||||.|+..|+.++++.|++.++++ +..+..+.||||.|+..++              +.+|.+|+||||
T Consensus       257 ~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh  335 (408)
T d1n11a_         257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH  335 (408)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHH
Confidence            3455778999999999999999999999999997 8889999999999998876              689999999999


Q ss_pred             hhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          227 IAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       227 ~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +||++|+.++|++|++++                 +++|.+|.+|+||||+|++.|+.++++
T Consensus       336 ~A~~~g~~~iv~~Ll~~G-----------------Ad~n~~d~~G~t~L~~A~~~~~~~iv~  380 (408)
T d1n11a_         336 QAAQQGHTDIVTLLLKNG-----------------ASPNEVSSDGTTPLAIAKRLGYISVTD  380 (408)
T ss_dssp             HHHHTTCHHHHHHHHHTT-----------------CCSCCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCC-----------------CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999666666554                 457999999999999999999988764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=2.6e-20  Score=158.19  Aligned_cols=93  Identities=17%  Similarity=0.166  Sum_probs=84.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCCH
Q 039657          169 DNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGVT  234 (507)
Q Consensus       169 ~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~~  234 (507)
                      +|||++|+++|+.++|+.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|+.+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            58999999999999999999999997 8899999999999999987              78899999999999999999


Q ss_pred             HHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHH
Q 039657          235 EMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAA  279 (507)
Q Consensus       235 ~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa  279 (507)
                      ++|++|+++             |    +++|.+|.+|+||||+|.
T Consensus        82 ~~v~~Ll~~-------------G----ad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          82 SCVKLLLSK-------------G----ADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHTT-------------C----CCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhcc-------------c----ccceeeCCCCCCHHHHHh
Confidence            966665554             4    457999999999999984

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.7e-19  Score=169.99  Aligned_cols=147  Identities=16%  Similarity=0.111  Sum_probs=112.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHH---------------------------------
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFE---------------------------------  211 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~---------------------------------  211 (507)
                      +..|+||||+|+..|+.++++.|++.++.. ...+..+.+|.+.|+.                                 
T Consensus        36 ~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~  114 (285)
T d1wdya_          36 EEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV  114 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHhhhhccccccc-cccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHH
Confidence            346999999999999999999999887655 4444555555555544                                 


Q ss_pred             cCC------------------------cccCCCCCCccchhhhcCCHHHHHHHHhhCC-c--------------------
Q 039657          212 KKN------------------------AQQSGRKETPMLIAARMGVTEMVEQILDTFP-A--------------------  246 (507)
Q Consensus       212 ~~~------------------------~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~-~--------------------  246 (507)
                      .++                        ...+..|.||||+|+++|+.+++++|+++.. +                    
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~  194 (285)
T d1wdya_         115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD  194 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC
T ss_pred             hcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCccccccccccc
Confidence            333                        3456679999999999999999999998632 2                    


Q ss_pred             ----hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCccccccccCCC
Q 039657          247 ----NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNG  322 (507)
Q Consensus       247 ----~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G  322 (507)
                          ..++++|++.+    +.+|.+|..|.||||.|+..|+.++++.               .++  ..+.+++.+|.+|
T Consensus       195 ~~~~~~i~~~Li~~g----a~~n~~~~~g~t~L~~a~~~~~~~~v~~---------------lL~--~~g~din~~d~~G  253 (285)
T d1wdya_         195 DSDVEAITHLLLDHG----ADVNVRGERGKTPLILAVEKKHLGLVQR---------------LLE--QEHIEINDTDSDG  253 (285)
T ss_dssp             TTTHHHHHHHHHHTT----CCSSCCCTTSCCHHHHHHHTTCHHHHHH---------------HHH--SSSCCTTCCCTTS
T ss_pred             chHHHHHHHHHHHCC----CCCCccCCCCCCccchhhhcCcHHHHHH---------------HHH--cCCCCCcCCCCCC
Confidence                13588888887    6789999999999999999999776531               011  1344678899999


Q ss_pred             CCccccccccc
Q 039657          323 KTPKEVFTETH  333 (507)
Q Consensus       323 ~Tpldl~~~~~  333 (507)
                      .||++++.+..
T Consensus       254 ~TpL~~A~~~~  264 (285)
T d1wdya_         254 KTALLLAVELK  264 (285)
T ss_dssp             CCHHHHHHHTT
T ss_pred             CCHHHHHHHcC
Confidence            99999987653

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.76  E-value=1.1e-19  Score=174.73  Aligned_cols=156  Identities=13%  Similarity=0.144  Sum_probs=114.7

Q ss_pred             ccCCCcccCC-CCCChHHHHHHHcCCHHHHHHHh--------hhCCcccccccCCCCcHHHHHHHcCC------------
Q 039657          156 IENGSAQSGT-EKMDNKILLAAKIGVTEMVDRFL--------KSYPAVIQELNTSEKNLVLLTFEKKN------------  214 (507)
Q Consensus       156 ~~~~~~~~~d-~~g~TpLh~Aa~~G~~~~v~~Ll--------~~~~~~~~~~d~~G~tpLh~A~~~~~------------  214 (507)
                      +....+|..| +.|+||||+||..|+.++|+.|+        +.|+++ +.+|.+|+||||+|+..|+            
T Consensus        20 l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga   98 (277)
T d2fo1e1          20 ITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGA   98 (277)
T ss_dssp             CSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeecccccccccccccccccccc
Confidence            3444455555 46999999999999999987774        557776 8899999999999999987            


Q ss_pred             --cccCCCCCCccchhhhcCCHHHHHHHHhhCCc--------------------------h-------------------
Q 039657          215 --AQQSGRKETPMLIAARMGVTEMVEQILDTFPA--------------------------N-------------------  247 (507)
Q Consensus       215 --~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~~~--------------------------~-------------------  247 (507)
                        +.+|.+|.||||+|+..|+.++++.+......                          .                   
T Consensus        99 d~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (277)
T d2fo1e1          99 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  178 (277)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             ccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccc
Confidence              67899999999999999999999988665211                          0                   


Q ss_pred             ----------------------HHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhh
Q 039657          248 ----------------------QYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQF  305 (507)
Q Consensus       248 ----------------------~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~  305 (507)
                                            .++.+++...   ....+.+|..|+||||+|++.|+.+++++               .
T Consensus       179 ~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~---~~~~~~~d~~g~tpL~~A~~~g~~~iv~~---------------L  240 (277)
T d2fo1e1         179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK---GSNKDKQDEDGKTPIMLAAQEGRIEVVMY---------------L  240 (277)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS---CCCTTCCCTTCCCHHHHHHHHTCHHHHHH---------------H
T ss_pred             cccccccCCCCccccccccccccccccccccc---cccccccCCCCCCHHHHHHHcCCHHHHHH---------------H
Confidence                                  0122222211   24566778888888888888887666531               1


Q ss_pred             hhccCCccccccccCCCCCccccccccc
Q 039657          306 VKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       306 v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                      ++   .+.+++.+|++|+||++++....
T Consensus       241 l~---~gadin~~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         241 IQ---QGASVEAVDATDHTARQLAQANN  265 (277)
T ss_dssp             HH---TTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             HH---CcCCCCCcCCCCCCHHHHHHHcC
Confidence            11   23457889999999999987654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.4e-19  Score=155.82  Aligned_cols=107  Identities=19%  Similarity=0.152  Sum_probs=93.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccch
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLI  227 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~  227 (507)
                      +..|..|+||||+|+ .|+.++++.|++.+.++ +..+.+|.+|++.|+..++              +.+|.+|+||||+
T Consensus        30 n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~  107 (156)
T d1bd8a_          30 DALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL  107 (156)
T ss_dssp             TCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCeeecc
Confidence            344778999999987 58999999999999997 8889999999999999987              6789999999999


Q ss_pred             hhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       228 Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      |++.|+.+++++|++              +    +.++.+|.+|+||||+|++.|+.++++
T Consensus       108 A~~~~~~~i~~~L~~--------------~----~~~~~~d~~G~TpL~~A~~~g~~~iv~  150 (156)
T d1bd8a_         108 AVQEGHTAVVSFLAA--------------E----SDLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHHHTCHHHHHHHHT--------------T----SCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             ccccccccccccccc--------------c----ccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            999999996665542              2    457999999999999999999988764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=9.1e-19  Score=161.64  Aligned_cols=90  Identities=23%  Similarity=0.247  Sum_probs=66.6

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHH
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQIL  241 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll  241 (507)
                      +.++..|+||||+|+..|..++++.+++.+.++                    +.+|.+|.||||+||.+|+.++|+.||
T Consensus       117 ~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~--------------------~~~d~~g~TpL~~A~~~g~~~~v~~Ll  176 (209)
T d1ot8a_         117 NAADNSGKTALHWAAAVNNTEAVNILLMHHANR--------------------DAQDDKDETPLFLAAREGSYEASKALL  176 (209)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT--------------------TCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccCCCCCCcchhhcccCcceeeeeeccccccc--------------------cccccccccccchhccccHHHHHHHHH
Confidence            334555666666666666666666666666654                    445556666666699999999777766


Q ss_pred             hhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          242 DTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       242 ~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      ++++                 ++|.+|.+|+||||+|++.|+.++++
T Consensus       177 ~~ga-----------------d~n~~d~~g~Tpl~~A~~~~~~~iv~  206 (209)
T d1ot8a_         177 DNFA-----------------NREITDHMDRLPRDVASERLHHDIVR  206 (209)
T ss_dssp             HTTC-----------------CTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HCCC-----------------CCCCcCCCCCCHHHHHHHcCCHHHHh
Confidence            6644                 47899999999999999999988874

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.1e-19  Score=154.42  Aligned_cols=108  Identities=15%  Similarity=0.158  Sum_probs=95.7

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      .+|..|.||||+|+ .|+.|+++.|++.++++ +.++.+|.+|++.++..++              +..|..|.+|||+|
T Consensus        29 ~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a  106 (156)
T d1ihba_          29 AQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA  106 (156)
T ss_dssp             CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccccccccccccccccccccccccccccccc
Confidence            34678999999886 79999999999999997 8899999999999998887              67899999999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +..|+.+++++|+++++                .+.+.+|.+|.||||+|++.|+.++++
T Consensus       107 ~~~~~~~~~~~Ll~~~~----------------~~~~~~d~~g~TpL~~A~~~~~~~iv~  150 (156)
T d1ihba_         107 AKEGHLRVVEFLVKHTA----------------SNVGHRNHKGDTACDLARLYGRNEVVS  150 (156)
T ss_dssp             HHTTCHHHHHHHHHHSC----------------CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccc----------------ccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999997777777655                256899999999999999999988764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.9e-19  Score=152.30  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=88.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCC-Cccchhhhc
Q 039657          167 KMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKE-TPMLIAARM  231 (507)
Q Consensus       167 ~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~-TpLH~Aa~~  231 (507)
                      .+.++||+||++|+.++|+.|+++++++ +.+|.+|+||||+|+ .|+              +.+|..|. ||||+|+++
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            3678999999999999999999999997 899999999999775 455              56777765 699999999


Q ss_pred             CCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          232 GVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       232 g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      |+.++|++|++++                 ..++.+|.+|+||||+|++.|+.++++
T Consensus        80 g~~~~v~~Ll~~g-----------------a~~~~~d~~G~T~l~~A~~~g~~~~v~  119 (125)
T d1bi7b_          80 GFLDTLVVLHRAG-----------------ARLDVRDAWGRLPVDLAEELGHRDVAR  119 (125)
T ss_dssp             TCHHHHHHHHHHT-----------------CCSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ccccccccccccc-----------------cccccccCCCCCHHHHHHHcCCHHHHH
Confidence            9999766666654                 457899999999999999999988764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=3.8e-18  Score=159.71  Aligned_cols=143  Identities=18%  Similarity=0.130  Sum_probs=94.1

Q ss_pred             hHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC-----------------cccCCCCCCccchhhhcC
Q 039657          170 NKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN-----------------AQQSGRKETPMLIAARMG  232 (507)
Q Consensus       170 TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~-----------------~~~d~~g~TpLH~Aa~~g  232 (507)
                      ||||+||..|+.++|+.|++..+..++.+|.+|+||||+|+..|+                 +..+..|.||+|+|+..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            566666666666666666666555556666666666666666654                 234555666666666666


Q ss_pred             CHHHHHHHHhhCCc----------------------hHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccC
Q 039657          233 VTEMVEQILDTFPA----------------------NQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLP  290 (507)
Q Consensus       233 ~~~iv~~Ll~~~~~----------------------~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~  290 (507)
                      ..++++.++.....                      ..++++|+..+    ...+.+|.+|+||||+|+..|+.++++. 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~-  156 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG----ASVRIKDKFNQIPLHRAASVGSLKLIEL-  156 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCTTSCCHHHHHHHHTCHHHHHH-
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhc----ccccccCCCCCCccchhhhccccccccc-
Confidence            66666666555432                      11456666666    5568899999999999999998765421 


Q ss_pred             chhhhhHHHHHHhhhhhccCCccccccccCCCCCccccccccc
Q 039657          291 GAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       291 gaal~~~~el~w~~~v~~~~~~~~~~~~N~~G~Tpldl~~~~~  333 (507)
                                     +.. .....++.+|.+|.||++++....
T Consensus       157 ---------------Ll~-~~~~~in~~d~~g~TpLh~A~~~~  183 (229)
T d1ixva_         157 ---------------LCG-LGKSAVNWQDKQGWTPLFHALAEG  183 (229)
T ss_dssp             ---------------HHT-TTCCCSCCCCTTSCCHHHHHHHTT
T ss_pred             ---------------ccc-cccccccccccccCCchhhhcccc
Confidence                           111 123456789999999999987653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.3e-18  Score=163.53  Aligned_cols=108  Identities=19%  Similarity=0.229  Sum_probs=91.6

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhh-CCcccccccCCCCcHHHHHHHcCC------------------cccCCCCCCc
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKS-YPAVIQELNTSEKNLVLLTFEKKN------------------AQQSGRKETP  224 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~-~~~~~~~~d~~G~tpLh~A~~~~~------------------~~~d~~g~Tp  224 (507)
                      .+..|.||||+|+..|+.++++.|++. +.++ +..|..|.++++.+.....                  +.+|.+|+||
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~  222 (285)
T d1wdya_         144 LRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP  222 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             hcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCc
Confidence            356799999999999999999999976 5565 8899999999987655432                  5678999999


Q ss_pred             cchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          225 MLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       225 LH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      ||+|+++|+.++|++||+.+.                .++|.+|.+|+||||+|++.|+.++++
T Consensus       223 L~~a~~~~~~~~v~~lL~~~g----------------~din~~d~~G~TpL~~A~~~~~~eiv~  270 (285)
T d1wdya_         223 LILAVEKKHLGLVQRLLEQEH----------------IEINDTDSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHSSS----------------CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cchhhhcCcHHHHHHHHHcCC----------------CCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999997776665432                568999999999999999999988874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=2e-18  Score=167.67  Aligned_cols=79  Identities=20%  Similarity=0.273  Sum_probs=54.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHHhhC
Q 039657          165 TEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTF  244 (507)
Q Consensus       165 d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll~~~  244 (507)
                      +..|.||||.|+..|+.++++.|++.++++                    +.+|.+|+||||+|+..|+.++|++|++++
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di--------------------n~~~~~g~TpL~~A~~~g~~~iv~lLl~~G  255 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARYDV--------------------NIKDYDGWTPLHAAAHWGKEEACRILVENL  255 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCT--------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCCCChhhHHHHcCChhhhcccccceecc--------------------cccccCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            444555555555555555555555555544                    455666677777799999999666666654


Q ss_pred             CchHHHHHHHhcccccccccccccCCCCcHHHHHHh
Q 039657          245 PANQYLQALLNRKILGESIFRQVDSQGNSALHLAAK  280 (507)
Q Consensus       245 ~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~  280 (507)
                                       +++|.+|.+|+||||+|++
T Consensus       256 -----------------adv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         256 -----------------CDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             -----------------CCTTCCCTTSCCTTTSCCS
T ss_pred             -----------------CCCCCcCCCCCCHHHHHHH
Confidence                             4579999999999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.3e-18  Score=146.73  Aligned_cols=101  Identities=11%  Similarity=0.014  Sum_probs=86.9

Q ss_pred             hHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCCHH
Q 039657          170 NKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGVTE  235 (507)
Q Consensus       170 TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~~~  235 (507)
                      ++||.||..|+.++|+.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|+.+|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            6899999999999999999999997 8999999999999999988              789999999999999999999


Q ss_pred             HHHHHHhhCCchHHHHHHHhcccccccccccccC-CCCcHHHHH--HhcCCCcccc
Q 039657          236 MVEQILDTFPANQYLQALLNRKILGESIFRQVDS-QGNSALHLA--AKFGDHRPWL  288 (507)
Q Consensus       236 iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~-~GnTpLHlA--a~~g~~~~v~  288 (507)
                      +|++|+++++                 .++.+|. +|+||++++  ++.|+.++++
T Consensus        82 ~v~~Ll~~ga-----------------~v~~~~~~~~~~~~~~~~a~~~g~~eiv~  120 (130)
T d1ycsb1          82 VCKFLVESGA-----------------AVFAMTYSDMQTAADKCEEMEEGYTQCSQ  120 (130)
T ss_dssp             HHHHHHHTTC-----------------CTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HHHHHHHcCC-----------------CcccccCCCCCCHHHHHHHHHcChHHHHH
Confidence            7666666544                 4676664 588998776  5678888764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.3e-18  Score=154.21  Aligned_cols=108  Identities=11%  Similarity=0.033  Sum_probs=91.8

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      .......+|||.+.........+.|.....+.....+..|.+|||.|+..+.              +.+|.+|.||||+|
T Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A  184 (228)
T d1k1aa_         105 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA  184 (228)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             ccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHH
Confidence            3455678899999999999999999888888777778899999999998776              67889999999999


Q ss_pred             hhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCccc
Q 039657          229 ARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW  287 (507)
Q Consensus       229 a~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v  287 (507)
                      +.+|+.++|++|++++                 +++|.+|.+|+||||+|++.|+.+++
T Consensus       185 ~~~g~~~~v~~Ll~~G-----------------ad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         185 SGRGLLPLVRTLVRSG-----------------ADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHTCHHHHHHHHHTT-----------------CCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCC-----------------CCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            9999999666666553                 45799999999999999999987765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.8e-18  Score=152.04  Aligned_cols=127  Identities=20%  Similarity=0.201  Sum_probs=104.4

Q ss_pred             hHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCCHH
Q 039657          170 NKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGVTE  235 (507)
Q Consensus       170 TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~~~  235 (507)
                      ++||.||..|+.++|+.|++.++..++.+|..|+||||+|+. ++              +.++.+|.+|++.|+..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            469999999999999999987554458999999999999875 43              677889999999999999999


Q ss_pred             HHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCcccc
Q 039657          236 MVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFF  315 (507)
Q Consensus       236 iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~  315 (507)
                      +++.+++.++                 .+|.+|.+|+||||+|++.|+.+++++                +   ....+.
T Consensus        83 ~~~~~l~~~~-----------------~~n~~~~~~~t~L~~A~~~~~~~i~~~----------------L---~~~~~~  126 (156)
T d1bd8a_          83 TLKVLVEHGA-----------------DVNVPDGTGALPIHLAVQEGHTAVVSF----------------L---AAESDL  126 (156)
T ss_dssp             HHHHHHHTTC-----------------CSCCCCTTSCCHHHHHHHHTCHHHHHH----------------H---HTTSCT
T ss_pred             cccccccccc-----------------ccccccCCCCeeecccccccccccccc----------------c---cccccc
Confidence            7776666544                 468899999999999999999776531                1   123456


Q ss_pred             ccccCCCCCccccccccc
Q 039657          316 TRFNDNGKTPKEVFTETH  333 (507)
Q Consensus       316 ~~~N~~G~Tpldl~~~~~  333 (507)
                      +.+|.+|+||++++....
T Consensus       127 ~~~d~~G~TpL~~A~~~g  144 (156)
T d1bd8a_         127 HRRDARGLTPLELALQRG  144 (156)
T ss_dssp             TCCCTTSCCHHHHHHHSC
T ss_pred             cccCCCCCCHHHHHHHcC
Confidence            789999999999987653

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.4e-17  Score=146.63  Aligned_cols=127  Identities=24%  Similarity=0.205  Sum_probs=103.9

Q ss_pred             hHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchhhhcCCHH
Q 039657          170 NKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIAARMGVTE  235 (507)
Q Consensus       170 TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~Aa~~g~~~  235 (507)
                      +|||+||..|+.++|+.|+++++++ +.+|.+|+||||+|+ .++              +.++.+|.|||+.++.+|+.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            8999999999999999999999997 889999999999876 455              568888999999999999999


Q ss_pred             HHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccccCchhhhhHHHHHHhhhhhccCCcccc
Q 039657          236 MVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFF  315 (507)
Q Consensus       236 iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~~~gaal~~~~el~w~~~v~~~~~~~~~  315 (507)
                      +++.|++.+.                 .++..|..|.+|||+|+..++.++++.               .++.  .+.+.
T Consensus        81 ~~~~l~~~~~-----------------~~~~~~~~~~~~l~~a~~~~~~~~~~~---------------Ll~~--~~~~~  126 (156)
T d1ihba_          81 TLQTLLEFQA-----------------DVNIEDNEGNLPLHLAAKEGHLRVVEF---------------LVKH--TASNV  126 (156)
T ss_dssp             HHHHHHHTTC-----------------CTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHH--SCCCT
T ss_pred             cccccccccc-----------------ccccccccccccccccccccccccccc---------------cccc--ccccc
Confidence            6666665533                 468899999999999999999776521               0111  23356


Q ss_pred             ccccCCCCCcccccccc
Q 039657          316 TRFNDNGKTPKEVFTET  332 (507)
Q Consensus       316 ~~~N~~G~Tpldl~~~~  332 (507)
                      +.+|++|+||++++...
T Consensus       127 ~~~d~~g~TpL~~A~~~  143 (156)
T d1ihba_         127 GHRNHKGDTACDLARLY  143 (156)
T ss_dssp             TCCCTTSCCHHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHc
Confidence            78999999999998765

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=4.3e-16  Score=138.19  Aligned_cols=87  Identities=15%  Similarity=0.208  Sum_probs=63.1

Q ss_pred             CCCCChHHHHHHHc---CCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHHH
Q 039657          165 TEKMDNKILLAAKI---GVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQIL  241 (507)
Q Consensus       165 d~~g~TpLh~Aa~~---G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~Ll  241 (507)
                      +..|+||||+|++.   |+.++|+.|++.++++                    +.+|.+|+||||+||.+|+.++|++|+
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi--------------------n~~d~~g~TpLh~A~~~~~~~~v~~Ll  101 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL--------------------DKQTGKGSTALHYCCLTDNAECLKLLL  101 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT--------------------TCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh--------------------hhhhhhhcccccccccccccccccccc
Confidence            44566666666653   4556666666666654                    455666666666799999999666666


Q ss_pred             hhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          242 DTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       242 ~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      +++                 +.++.+|.+|.||||+|++.|+.+++.
T Consensus       102 ~~g-----------------ad~~~~d~~g~tpL~~A~~~~~~~i~~  131 (154)
T d1dcqa1         102 RGK-----------------ASIEIANESGETPLDIAKRLKHEHCEE  131 (154)
T ss_dssp             HTT-----------------CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccC-----------------ccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            654                 457899999999999999999988764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.57  E-value=1.5e-17  Score=167.08  Aligned_cols=112  Identities=16%  Similarity=0.126  Sum_probs=88.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHH---HhhhCCcccccccCCCCcHHHHHHHcCC--------------ccc--CCCCC
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDR---FLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQ--SGRKE  222 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~---Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~--d~~g~  222 (507)
                      +.++..|.||||+||++|+.++++.   |++.++++ +.+|.+|+||||+||+.|+              +..  +.+|+
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY  162 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCC
Confidence            3447789999999999999877665   78888887 8899999999999999998              222  34699


Q ss_pred             CccchhhhcCCHHHHHHHHhhCCchHHHHHHHhcccccccccccccCCCCcHHHHHHhcCCCcccc
Q 039657          223 TPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPWL  288 (507)
Q Consensus       223 TpLH~Aa~~g~~~iv~~Ll~~~~~~~vv~~Ll~~~~~~~~~in~~D~~GnTpLHlAa~~g~~~~v~  288 (507)
                      ||||+||.+||.++|++|++.+++              ....+..+.+|.||||.|+.+||.++++
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~--------------~~~~~~~~~~~~t~l~~A~~~g~~~iv~  214 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPT--------------EATAMIQAENYYAFRWAAVGRGHHNVIN  214 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGG--------------GHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCc--------------ccccccccCCCcchhhHHhhcCHHHHHH
Confidence            999999999999988888887664              1233555667888999999999988874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-15  Score=130.38  Aligned_cols=77  Identities=9%  Similarity=0.057  Sum_probs=66.4

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCC-cHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          164 GTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEK-NLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       164 ~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~-tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      +|..|.||||+|+ .|+.++++.|++.++++ +.+|..|. ||||+|++.|+              +.+|.+|+||||+|
T Consensus        32 ~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A  109 (125)
T d1bi7b_          32 PNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA  109 (125)
T ss_dssp             CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHH
T ss_pred             ccccccccccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCHHHHH
Confidence            3667899999664 79999999999999987 77777765 69999999887              78899999999999


Q ss_pred             hhcCCHHHHHHHHh
Q 039657          229 ARMGVTEMVEQILD  242 (507)
Q Consensus       229 a~~g~~~iv~~Ll~  242 (507)
                      +++|+.++|++|++
T Consensus       110 ~~~g~~~~v~~Lls  123 (125)
T d1bi7b_         110 EELGHRDVARYLRA  123 (125)
T ss_dssp             HHHTCHHHHHHHSS
T ss_pred             HHcCCHHHHHHHHh
Confidence            99999998888875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=3.2e-15  Score=132.43  Aligned_cols=67  Identities=16%  Similarity=0.187  Sum_probs=55.8

Q ss_pred             CCCcccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHH
Q 039657          158 NGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMV  237 (507)
Q Consensus       158 ~~~~~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv  237 (507)
                      ..+++.+|..|+||||+||..|+.++++.|++.++++ +.+|.+|+||                   ||+|+++|+.+++
T Consensus        71 gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tp-------------------L~~A~~~~~~~i~  130 (154)
T d1dcqa1          71 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETP-------------------LDIAKRLKHEHCE  130 (154)
T ss_dssp             CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH-------------------HHHHHHTTCHHHH
T ss_pred             CCChhhhhhhhccccccccccccccccccccccCccc-cccCCCCCCH-------------------HHHHHHcCCHHHH
Confidence            4578899999999999999999999999999999998 5555555555                   5559999999977


Q ss_pred             HHHHhhC
Q 039657          238 EQILDTF  244 (507)
Q Consensus       238 ~~Ll~~~  244 (507)
                      ++|++..
T Consensus       131 ~~L~~~~  137 (154)
T d1dcqa1         131 ELLTQAL  137 (154)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            7777653

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.9e-15  Score=127.52  Aligned_cols=67  Identities=12%  Similarity=0.069  Sum_probs=61.7

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccCCCCCCccchh
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQSGRKETPMLIA  228 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d~~g~TpLH~A  228 (507)
                      .+|..|+||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..++              +.+|.+|+||||+|
T Consensus        30 ~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          30 RTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             ccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            34668999999999999999999999999997 8999999999999999987              77899999999999


Q ss_pred             hh
Q 039657          229 AR  230 (507)
Q Consensus       229 a~  230 (507)
                      ..
T Consensus       109 ~~  110 (118)
T d1myoa_         109 DN  110 (118)
T ss_dssp             SS
T ss_pred             hH
Confidence            54

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.1e-15  Score=126.15  Aligned_cols=81  Identities=12%  Similarity=0.020  Sum_probs=68.5

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCC--------------cccC-CCCCCcc-
Q 039657          162 QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKN--------------AQQS-GRKETPM-  225 (507)
Q Consensus       162 ~~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~--------------~~~d-~~g~TpL-  225 (507)
                      +.+|.+|+||||+||..|+.++++.|++.++++ +.+|.+|+||||+|+..|+              +.++ .+|+||+ 
T Consensus        28 n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~  106 (130)
T d1ycsb1          28 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD  106 (130)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHH
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHH
Confidence            344678999999999999999999999999997 8999999999999999988              3344 4578875 


Q ss_pred             -chhhhcCCHHHHHHHHhh
Q 039657          226 -LIAARMGVTEMVEQILDT  243 (507)
Q Consensus       226 -H~Aa~~g~~~iv~~Ll~~  243 (507)
                       +.|+.+|+.++|++|++.
T Consensus       107 ~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1         107 KCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHhH
Confidence             456788999988888764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.6e-14  Score=124.79  Aligned_cols=58  Identities=19%  Similarity=0.137  Sum_probs=42.9

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHhhhCCcccccccCCCCcHHHHHHHcCCcccCCCCCCccchhhhcCCHHHHHHH
Q 039657          163 SGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQI  240 (507)
Q Consensus       163 ~~d~~g~TpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A~~~~~~~~d~~g~TpLH~Aa~~g~~~iv~~L  240 (507)
                      .+|..|+||||+||..|+.++|+.|++.++++ +.                   +|.+|+||||+|+.+|+.|+|++|
T Consensus        95 ~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~-------------------~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          95 AKDMLKMTALHWATEHNHQEVVELLIKYGADV-HT-------------------QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TC-------------------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccCchHHHhhhhcchhheeeeccccccCC-cc-------------------cCCCCCCHHHHHHHcCCHHHHHhC
Confidence            34667788888888888888888888887776 34                   455555556669999999988754