Citrus Sinensis ID: 039706
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1166 | 2.2.26 [Sep-21-2011] | |||||||
| Q5R8D8 | 494 | DnaJ homolog subfamily C | yes | no | 0.332 | 0.785 | 0.297 | 3e-34 | |
| Q99615 | 494 | DnaJ homolog subfamily C | no | no | 0.332 | 0.785 | 0.297 | 7e-34 | |
| Q9QYI3 | 494 | DnaJ homolog subfamily C | yes | no | 0.332 | 0.785 | 0.297 | 2e-33 | |
| Q54IP0 | 539 | DnaJ homolog subfamily C | yes | no | 0.329 | 0.712 | 0.248 | 4e-28 | |
| Q9HGM9 | 476 | DnaJ homolog subfamily C | yes | no | 0.293 | 0.718 | 0.257 | 2e-22 | |
| Q84JR9 | 682 | TPR repeat-containing thi | no | no | 0.252 | 0.431 | 0.278 | 3e-20 | |
| Q9SIN1 | 691 | Inactive TPR repeat-conta | no | no | 0.243 | 0.410 | 0.272 | 5e-20 | |
| Q9MAH1 | 699 | TPR repeat-containing thi | no | no | 0.249 | 0.416 | 0.243 | 6e-13 | |
| Q28IV3 | 657 | RNA polymerase II-associa | no | no | 0.091 | 0.162 | 0.351 | 3e-12 | |
| Q54M21 | 502 | DnaJ homolog subfamily C | no | no | 0.328 | 0.762 | 0.229 | 4e-12 |
| >sp|Q5R8D8|DNJC7_PONAB DnaJ homolog subfamily C member 7 OS=Pongo abelii GN=DNAJC7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 203/467 (43%), Gaps = 79/467 (16%)
Query: 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672
NRAAT M LGR R+AL D +V +D F+R ++R CHL+LG A + F+ L+
Sbjct: 67 NRAATLMMLGRFREALGDAQQSVRLDDSFVRGRLREGKCHLSLGNAMAACRSFQRALE-- 124
Query: 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE 732
+D K A +A + A V E + + + + D + +D AL +
Sbjct: 125 ----LDHKNA-QAQQEFKNANAVMEYEKIAETDFEKR---DFRKVVFCMDRALEFAPACH 176
Query: 733 KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLW 792
+ +KAE L ML +Y E + N+ L G + + K V F +
Sbjct: 177 RFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDC-IEKAVQFFV- 234
Query: 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA 852
+A+ HE + L +K GN+AF+
Sbjct: 235 ----------------QALRMAPDHEKA---------CIACRNAKALKAKKEDGNKAFKE 269
Query: 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912
G + A E YT AL + A +CNR LR + DAI DC A+ LD Y+K
Sbjct: 270 GNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIK 329
Query: 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLT 972
A RRA Y Y+ A D+ ++ Q EK+ ++ + L
Sbjct: 330 AYLRRAQCYMDTEQYEEAVRDYEKVY-----QTEKT----------------KEHKQLLK 368
Query: 973 AVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDK-AGQSLVRSDNGDDGL 1031
+ + E +K D Y ILGV+ + S +IK+ YRK AL HHPD+ +G S
Sbjct: 369 SAQLELKKSKRRDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGAS----------- 417
Query: 1032 WKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRY----DLEEETRN 1074
AEV K+ EK FK + EA+ +LSDP K++RY DL+EE N
Sbjct: 418 -----AEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEGTN 459
|
Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm. Pongo abelii (taxid: 9601) |
| >sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 201/467 (43%), Gaps = 79/467 (16%)
Query: 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672
NRAAT M LGR R+AL D +V +D F+R +R CHL+LG A + F+ L+
Sbjct: 67 NRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALE-- 124
Query: 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE 732
+D K A +A + A V E + + + + D + +D AL +
Sbjct: 125 ----LDHKNA-QAQQEFKNANAVMEYEKIAETDFEKR---DFRKVVFCMDRALEFAPACH 176
Query: 733 KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLW 792
+ +KAE L ML +Y E + N+ L G + + K V F +
Sbjct: 177 RFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDC-IEKAVQFFV- 234
Query: 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA 852
+A+ HE + L +K GN+AF+
Sbjct: 235 ----------------QALRMAPDHEKA---------CIACRNAKALKAKKEDGNKAFKE 269
Query: 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912
G + A E YT AL + A +CNR LR + DAI DC A+ LD Y+K
Sbjct: 270 GNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIK 329
Query: 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLT 972
A RRA Y Y+ A D+ ++ Q EK+ ++ + L
Sbjct: 330 AYLRRAQCYMDTEQYEEAVRDYEKVY-----QTEKT----------------KEHKQLLK 368
Query: 973 AVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDK-AGQSLVRSDNGDDGL 1031
+ E +K D Y ILGV+ + S +IK+ YRK AL HHPD+ +G S
Sbjct: 369 NAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGAS----------- 417
Query: 1032 WKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRY----DLEEETRN 1074
AEV K+ EK FK + EA+ +LSDP K++RY DL+EE N
Sbjct: 418 -----AEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEGMN 459
|
Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm. Homo sapiens (taxid: 9606) |
| >sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 203/467 (43%), Gaps = 79/467 (16%)
Query: 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672
NRAAT M LGR R+AL D +V +D F+R +R CHL+LG A + F+ L+
Sbjct: 67 NRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALE-- 124
Query: 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE 732
+D K A +A + A V E ++ A++ + D + +D AL +
Sbjct: 125 ----LDHKNA-QAQQEFKNANAVME-YEKIAEV--DFEKRDFRKVVFCMDRALEFAPACH 176
Query: 733 KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLW 792
+ +KAE L ML +Y E + N+ L G + + K V F +
Sbjct: 177 RFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDC-IEKAVQFFV- 234
Query: 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA 852
+A+ HE + L +K GN+AF+
Sbjct: 235 ----------------QALRMAPDHEKA---------CVACRNAKALKAKKEDGNKAFKE 269
Query: 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912
G + A E YT AL + A +CNR LR + DAI DC A+ LD Y+K
Sbjct: 270 GNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRQLEDAIEDCTNAVKLDDTYIK 329
Query: 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLT 972
A RRA Y ++ A D+ ++ Q EK+ ++ + L
Sbjct: 330 AYLRRAQCYMDTEQFEEAVRDYEKVY-----QTEKT----------------KEHKQLLK 368
Query: 973 AVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDK-AGQSLVRSDNGDDGL 1031
+ E +K D Y ILGV+ + S +IK+ YRK AL HHPD+ +G S
Sbjct: 369 NAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGAS----------- 417
Query: 1032 WKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRY----DLEEETRN 1074
AEV K+ EK FK + EA+ +LSDP K++RY DL+EE N
Sbjct: 418 -----AEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEGMN 459
|
Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes (By similarity). Recruits NR1I3 to the cytoplasm. Mus musculus (taxid: 10090) |
| >sp|Q54IP0|DNJC7_DICDI DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 114/459 (24%), Positives = 203/459 (44%), Gaps = 75/459 (16%)
Query: 613 NRAATRMAL---GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCL 669
NRAA +A+ ++D++ D + A+ ++ F++ RA+ ++ L + +
Sbjct: 43 NRAAAYLAICTKSSLQDSIKDSLKAIELERSFIKGYTRASKAYIHLAQYD---------- 92
Query: 670 QSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS 729
Q+ S + ++ LQ+ ++ + + L + K ++ +L I+ L S
Sbjct: 93 QAASIIVRGLVFDPRNNELLQEKNQIDSIQRTISSLTKEKALSNPSSSLNQIENVLSQSK 152
Query: 730 YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789
Y+ +L +KA L L++Y + L +N L G S+ ++ ++
Sbjct: 153 YNTQLQVLKARVLIELKQYPQASNLMTTLLQEDSRNPEYLYVRGLSLYY---QNNFPLAL 209
Query: 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849
+ ++ L + ++ R+ AL+R +R + +K GNE
Sbjct: 210 QHFQNSLTYDPDYSESRV-----ALKR-------------------LRSIESKKKEGNEY 245
Query: 850 FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN 909
FQ+ + A + +T ALS + + + NRAAA L I++AI DC A+ +D N
Sbjct: 246 FQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPN 305
Query: 910 YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARM 969
Y KA RRA +Y+ A D+ + +L + E L ++++A++
Sbjct: 306 YGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGE-------------LQRNIKEAKI 352
Query: 970 RLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDD 1029
+K + D Y ILGV +IK+ YRK AL++HPDK Q
Sbjct: 353 -------AHKKSLRKDYYKILGVSKEAGETEIKKAYRKLALQYHPDKNNQ---------- 395
Query: 1030 GLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDL 1068
+ E AEK+FK I EAY+VLSD K+ +YD+
Sbjct: 396 -----LPEEEKAQAEKMFKDIGEAYSVLSDEKKKRQYDM 429
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9HGM9|DNJC7_SCHPO DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC543.02c PE=4 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 185/463 (39%), Gaps = 121/463 (26%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
SNRAAT M +G AL D + I PD + Q R + L + +A Y + Q+
Sbjct: 63 SNRAATYMQIGEFELALCDAKQSDRIKPDVPKTQSRIRQAYEGLSILNEAEVYLKNK-QA 121
Query: 672 GSDVCVDQKIAVEASDGLQK-----AQKVSECMQRSAQ--LLQNKTSNDAEIALGVIDEA 724
G +A+ A D LQ+ Q M AQ + QN +IA V+
Sbjct: 122 G--------LALNALDRLQRRIDSTTQPPMSWMYLKAQVYIFQNDMDRAQKIAHDVL--- 170
Query: 725 LFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSEST 784
+L EAL + K +++ +N+ + ++++LD +T
Sbjct: 171 --------RLNPKNVEALVLRGK----------VMYYSGENAKAITHFQEALKLDPDCTT 212
Query: 785 KHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKS 844
F+ VR+L K+
Sbjct: 213 AKTLFK--------------------------------------------QVRKLENTKN 228
Query: 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAI 904
GN+ F+ G + +A E Y+ AL ++ A + NRA L+ +A++D + A+
Sbjct: 229 QGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSDNAL 288
Query: 905 ALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDL 964
A+D +YLK + RA +E + ++ A D I L SD NL +L
Sbjct: 289 AIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIEL-----------DASD--ANLRQEL 335
Query: 965 RQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRS 1024
R+ ++ L ++ RK D Y ILGV + +IK+ YRK AL +HPDK +L
Sbjct: 336 RRLQLEL---KKSKRK----DHYKILGVSKEATDIEIKKAYRKLALVYHPDKNAGNL--- 385
Query: 1025 DNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYD 1067
+AE FK + EAY +LSDP R R+D
Sbjct: 386 -----------------EAEARFKEVGEAYTILSDPESRRRFD 411
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 151/327 (46%), Gaps = 33/327 (10%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
SNRAA A GR+ +A+ +C+ AV DP + R R A+ +L LGE E+A ++ +C+
Sbjct: 249 SNRAAALAASGRLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRH--LCV-- 304
Query: 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS-Y 730
S C DQ LQ+ Q + + ++ + + D + ID A+ +
Sbjct: 305 -SGQCPDQA-------DLQRLQTLEKHLRLCT---EARKIGDWRTVISEIDAAIANGADS 353
Query: 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790
S +L+ KAEA L + ++ LC + P LD + E +
Sbjct: 354 SPQLVACKAEAFLRLHQIKDS-DLCISSI-------PRLDHH----HTQPPEKLFGIVCD 401
Query: 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850
+ C+ + LGR E AI +ER + + E ++ + V+ + ++ GNE F
Sbjct: 402 AYVLCVQAQVDMALGRFENAIVKVERAMTIDHSNSPE-VVSVLNNVKNVAKARTRGNELF 460
Query: 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
+GR+SEA Y L F ++ +CNRAA + L ++ DCN A+ + +Y
Sbjct: 461 SSGRYSEASVAYGDGLKLDA----FNSVLYCNRAACWFKLGMWEKSVDDCNQALRIQPSY 516
Query: 911 LKAISRRATLYEMIRDYDHAASDFHRL 937
KA+ RRA Y + ++ A D+ L
Sbjct: 517 TKALLRRAASYGKLGRWEDAVRDYEVL 543
|
Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIN1|TTL3_ARATH Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 154/337 (45%), Gaps = 53/337 (15%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
SNRAA AL R+ +A+ +C+ AV IDP + R R A+ +L LGE E+A ++ +C
Sbjct: 258 SNRAAALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRH--ICF-- 313
Query: 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS-Y 730
S C DQ LQ+ Q + + ++R + + D + A+ D A+ +
Sbjct: 314 -SGQCPDQA-------DLQRLQTLEKHLRRC---WEARKIGDWKTAIKETDAAIANGADS 362
Query: 731 SEKLLEMKAEALFMLRKYEE------VIQLCEQTFHFAEKNSPPLDANGQSMELDSSEST 784
S +L+ KAEA L++ E+ I + +H + P + G +E
Sbjct: 363 SPQLVACKAEAFLRLKQIEDSDFCVSCIPRLDHHYH----SQPQVKLFGMVVE------- 411
Query: 785 KHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLES----LIPLAGTVRELL 840
+ C+ + LGR E A+ ER ML+ ++ + V+ ++
Sbjct: 412 ------AYVLCIQAQVDMALGRFENAVVKAER------AAMLDQTNPEVVSVLNNVKMVV 459
Query: 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADC 900
++ GNE F +GR SEA Y L + ++ +CNRAA + L ++ DC
Sbjct: 460 RARTRGNELFSSGRFSEACVAYGDGL----KQDDSNSVLYCNRAACWYKLGLWEKSVEDC 515
Query: 901 NLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937
N A+ +Y+KA+ RRA Y + ++ A D+ L
Sbjct: 516 NHALKSQPSYIKALLRRAASYGKLGRWEDAVKDYEFL 552
|
Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. May function as an adaptator protein for BRL2 and may be required for signaling affecting leaf vascular tissue pattern formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 134/332 (40%), Gaps = 41/332 (12%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
SNRAA + L R+ +A+ +C AV DP++ R R A + LG++ A K+ +C
Sbjct: 265 SNRAAALIGLSRIGEAVKECEDAVRSDPNYGRAHHRLALLLIRLGQVNSARKH--LCFLG 322
Query: 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS-Y 730
SD ++ QK+ + + + + D + L D A+ + +
Sbjct: 323 ------------RPSDPME-LQKLEAVEKHLIKCVDARRVTDWKTVLIEADAAIVSGADF 369
Query: 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790
S +L K EA L + ++ Q+ P + ++ F
Sbjct: 370 SPQLFMCKVEAFLKLHRLDDA-----QSKLLEVPKVEPFPVSCSQTRFSGMACEAYIYF- 423
Query: 791 LWRCCLIFKSYFTLGRLEEAIAALERHES----GNGGKMLESLIPLAGTVRELLCRKSAG 846
+ + LGR E A+ A E+ N ML + + L R + G
Sbjct: 424 -----VKAQIEMALGRFENAVMAAEKASQIDPRCNEVAMLHNTVTLVARAR------ARG 472
Query: 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906
N+ +++ R++EA Y L P AI +CNRAA + L +I DCN A+
Sbjct: 473 NDLYKSERYTEASSAYAEGLRLD----PCNAILYCNRAACWFKLGMWERSIEDCNQALRY 528
Query: 907 DGNYLKAISRRATLYEMIRDYDHAASDFHRLI 938
+Y K + RRA + + A SD+ LI
Sbjct: 529 QPSYTKPLLRRAASNSKMERWGAAVSDYEALI 560
|
Involved in responses to osmotic stress and abscisic acid (ABA). May act as a positive regulator of ABA signaling during germination and seedling development under stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIAD 899
L K GN F++G++ EA+E YT + ++ P+ A+ NRA+A+ L+ A +D
Sbjct: 133 LLEKEKGNNYFKSGQYDEAIECYTRGM----DADPYNAVLPTNRASAFFRLKKYAVAESD 188
Query: 900 CNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQ 950
CNLAIAL+ NY KA +RR ++D A D+ +++ L E N+
Sbjct: 189 CNLAIALNHNYAKAYARRGAARLALKDLQGAKEDYEKVLELDVNNFEAKNE 239
|
May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein. Xenopus tropicalis (taxid: 8364) |
| >sp|Q54M21|DNJC3_DICDI DnaJ homolog subfamily C member 3 homolog OS=Dictyostelium discoideum GN=dnajc3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 107/467 (22%), Positives = 199/467 (42%), Gaps = 84/467 (17%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
L RA G+ ALSD A+ +PD + +++ A +LG E+A ++ L+
Sbjct: 72 LFKRAGIYHQKGKNILALSDLNRAIEANPDNIHARLKRAKIQSSLGRFEEAMDEYKRVLK 131
Query: 671 SGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY 730
D +A ++K +KV + +++ +++ + + IA+ L I S
Sbjct: 132 IRPDNS-------QAKQQIEKLKKVEQQLEKVRDMVKVEKNYKDSIAI-----LLDIQSV 179
Query: 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790
L E++ + LCE F + + LD ++M + SE + V+
Sbjct: 180 VSDLKEVR-------------LMLCECFFQQGD-HRKVLD---ETMTILKSEPS-SVAAL 221
Query: 791 LWRCCLIFKSYFTLGRLEEAIAALER-----HESGNGGKMLESLIPLAGTVRELLCRKSA 845
WR K++F++G E A+ L+ ++ N M++ T+ + +
Sbjct: 222 YWRG----KTFFSMGEKEIAMKFLKEGLKFDPDNTNCRAMIK-------TINKFEKSTAN 270
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
E F ++ +A+ AL S + + + ++ ++I CN A+
Sbjct: 271 AQELFNQQKYQDALGQIEDALEIEPNSPTHSTPLYLLKCKCLLKVKKGKESIEACNRALE 330
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLR 965
LD A+ RA Y DY A +D++ K+ + +D I+ + +R
Sbjct: 331 LDELNADALYNRAEAYMYEEDYQKALNDYN-----------KAREHKPNDPQIH--DGIR 377
Query: 966 QARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSD 1025
+A+ A + RKD Y ILG++ S + +IK+ ++K A+++HPDK+ ++
Sbjct: 378 RAQ---KAQQMAKRKD----YYKILGIQKSATPEEIKKAFKKLAIKNHPDKSTET----- 425
Query: 1026 NGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEET 1072
KE +++ D I EAY L D KR RYD+ E+
Sbjct: 426 ------DKEKAQQIYMD-------INEAYEALKDEEKRKRYDMGEDI 459
|
May be involved in the unfolded protein response (UPR) during ER stress. Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1166 | ||||||
| 359479457 | 1380 | PREDICTED: uncharacterized protein LOC10 | 0.822 | 0.694 | 0.544 | 0.0 | |
| 255544936 | 1338 | conserved hypothetical protein [Ricinus | 0.923 | 0.804 | 0.509 | 0.0 | |
| 297734955 | 1018 | unnamed protein product [Vitis vinifera] | 0.746 | 0.854 | 0.541 | 0.0 | |
| 307136074 | 1337 | DNAJ heat shock N-terminal domain-contai | 0.845 | 0.737 | 0.466 | 0.0 | |
| 449444895 | 1341 | PREDICTED: uncharacterized protein LOC10 | 0.849 | 0.739 | 0.460 | 0.0 | |
| 449482523 | 1341 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.849 | 0.739 | 0.459 | 0.0 | |
| 356540948 | 1158 | PREDICTED: uncharacterized protein LOC10 | 0.866 | 0.872 | 0.442 | 0.0 | |
| 356544355 | 1151 | PREDICTED: uncharacterized protein LOC10 | 0.681 | 0.690 | 0.521 | 0.0 | |
| 297811377 | 1163 | DNAJ heat shock N-terminal domain-contai | 0.834 | 0.836 | 0.420 | 0.0 | |
| 30684104 | 1165 | Heat shock protein DnaJ with tetratricop | 0.832 | 0.833 | 0.411 | 0.0 |
| >gi|359479457|ref|XP_002274653.2| PREDICTED: uncharacterized protein LOC100256902 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1095 bits (2833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/1107 (54%), Positives = 738/1107 (66%), Gaps = 148/1107 (13%)
Query: 141 DVKNFVFSGSKKSSDSF--AAASELPDQMKNLNI-------------------------- 172
D FVF S+K DSF +++S L DQMKNLNI
Sbjct: 284 DANKFVFGSSRKGIDSFMGSSSSTLHDQMKNLNIEESVNTNVVEKEEADNETINKNSFLF 343
Query: 173 -TSKGGSGYIVGESENMLSNEMGRKLKIGSVSSDSSAGQTDMGRMSSHIFVKDKQSTNLG 231
++ GY G +EN L+++M RK+KI + D+S GQT+ + LG
Sbjct: 344 GSTGSARGYFSGIAENSLADDM-RKMKIRNGVGDTS-GQTNTEK--------------LG 387
Query: 232 DKKLHDLGKSVPTEVDFQAGLQGKNSGGGEDPVDKAKDGAIPSETASSSSSFSSSGIPFQ 291
+K H++G S+PT+ FQA KN G + P+D++ D I + + SFSS I Q
Sbjct: 388 GEKFHNVGNSIPTKFTFQAVTSVKNLSGSQGPLDQSNDD-IKMKGKPGTFSFSSHDIHLQ 446
Query: 292 SVDNASKVPDVDRTDRMNEFSFMSKQDGMAAPFVGFRTPNQKINLFSGAGQEVEFSAKRG 351
+ +N + P +D+++ + FSF +K + P V F TPN K++LFS +++EFSAKR
Sbjct: 447 AYENTFQAPSMDKSE--DRFSFANKLEERGTPHVDFSTPNPKVDLFSSVNKKIEFSAKRA 504
Query: 352 SVRDTKVKKKRGKLRKPISIPLWHGQDFVSRDSSSPEDPEPSESYSPMDVSPYQETLADT 411
+V DT+VK+++ KL++P W GQDFV R+SSS E+PE SESYSPMDVSPYQETLAD
Sbjct: 505 AVGDTRVKRRKEKLKQPNPNQRWLGQDFVLRESSSQENPEASESYSPMDVSPYQETLADN 564
Query: 412 KCSRETSVASDESFSLDNNDASTDSQPAAPNVAVDEELVAATERMDINDEDVEFRDTKE- 470
+ SRETS S ES LDN+ ASTDS N A+DE+LV AT+ ++IN +DV+ R+TKE
Sbjct: 565 QFSRETSEISVESIHLDNSYASTDSHKTVSNDAIDEDLVVATQCLNINVDDVKGRETKEG 624
Query: 471 --DHSDRGVGSEVPQDESVSGTETESFKSANEEID---DATDNSAETEASSSAGIQRQDS 525
D D+ VG+ +ESVSGTETESFKS E+ D D SAETE S + I +Q +
Sbjct: 625 DEDCFDQSVGAGGSLEESVSGTETESFKSLTEQFDINSDIASTSAETEVSLISDIDKQVN 684
Query: 526 DSRMQFSFPSHSEDIGGSNFTFAASSASQ------------------------------- 554
D R QF F S SED+G +NFTFAASS+ Q
Sbjct: 685 DGRTQFCFASSSEDVGSTNFTFAASSSGQDQSAAAMRYHRKKNRIKVAPDSYDSAPNLKV 744
Query: 555 --------------ASPLLSSGQEERGDLFSSRLKGDRN----SEVDRGQEIKQEPNLAS 596
SPL S G+ ++G++ +S KG RN +EVD+ ++IKQE N S
Sbjct: 745 PYTSSSVQFFPLSGTSPLSSQGRGQKGNISTSLCKG-RNGTDSTEVDKQKDIKQEFNSTS 803
Query: 597 AETIAAQEACEKWRL------------------------------------------SNR 614
A T+AAQEACEKWRL SNR
Sbjct: 804 AATLAAQEACEKWRLRGNQAYTNGDLSKAEDCYTQGVNCISQSETSKSCLRALMLCYSNR 863
Query: 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674
AATRM+LGRMR+AL DC+LA ID +FLRVQVRAA+C+LALGE+EDAS YF+ CLQSG+D
Sbjct: 864 AATRMSLGRMREALGDCLLAAGIDHNFLRVQVRAASCYLALGEVEDASLYFKKCLQSGND 923
Query: 675 VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKL 734
CVD+KIAVEASDGLQK QKVS+CM SA+LL+ +TS D E ALG++DEAL ISS+SEKL
Sbjct: 924 SCVDRKIAVEASDGLQKTQKVSDCMNHSAELLEQRTSRDVETALGILDEALIISSFSEKL 983
Query: 735 LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRC 794
LEMKAEALFMLRKYEEVIQLCEQT AEKNSP L ++G LD S +K SFRLWR
Sbjct: 984 LEMKAEALFMLRKYEEVIQLCEQTLGSAEKNSPTLGSDGHLANLDGSGLSKDSSFRLWRV 1043
Query: 795 CLIFKSYFTLGRLEEAIAALERH-ESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853
LIFKSYF LGRLE+A+ LE+ E GNG K LES IPLA TVRELL K+AGNEAFQ+G
Sbjct: 1044 RLIFKSYFYLGRLEDALTLLEKQKEFGNGNKTLESSIPLAATVRELLRHKNAGNEAFQSG 1103
Query: 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKA 913
RH+EAVEHYTAALSC + S PF AICFCNR+AA+KAL I+DAIADC+LAIALDGNYLKA
Sbjct: 1104 RHAEAVEHYTAALSCNIVSRPFTAICFCNRSAAHKALGQISDAIADCSLAIALDGNYLKA 1163
Query: 914 ISRRATLYEMIRDYDHAASDFHRLIALLTKQI-EKSNQSGVSDRSINLANDLRQARMRLT 972
ISRRATL+EMIRDY A SD RL++LL+KQ+ EK NQ G DRS + NDLRQA++RL+
Sbjct: 1164 ISRRATLFEMIRDYGQATSDLQRLVSLLSKQLEEKVNQPGGYDRSTSFGNDLRQAQLRLS 1223
Query: 973 AVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLW 1032
+EEE RKDIPLDMYLILGVE S S +DIK+ YRKAALRHHPDK GQSL +S+NGD G W
Sbjct: 1224 LMEEEDRKDIPLDMYLILGVEPSASASDIKKAYRKAALRHHPDKTGQSLAKSENGDGGFW 1283
Query: 1033 KEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHAYAQ 1092
KEI EVH+DA+KLFKMI EAYA+LSDPSKRSRYD EEE RN QK+ NGS+TSR H Q
Sbjct: 1284 KEIAEEVHRDADKLFKMIGEAYAILSDPSKRSRYDHEEEMRNAQKRGNGSSTSRVHTDVQ 1343
Query: 1093 NYPFERSSSRRQWREVRRSYDNSAARG 1119
N+PFERSSSRRQWREV SY +S++RG
Sbjct: 1344 NFPFERSSSRRQWREVWGSYGHSSSRG 1370
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255544936|ref|XP_002513529.1| conserved hypothetical protein [Ricinus communis] gi|223547437|gb|EEF48932.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 655/1286 (50%), Positives = 801/1286 (62%), Gaps = 209/1286 (16%)
Query: 10 FSFNTRSVSNS-SKP-TRPRLHKTRKQSKSNSQN-------------------------- 41
SFN+ S+ S KP ++PRL K R+QS NSQN
Sbjct: 77 LSFNSPSIPRSCGKPLSKPRLLKVRRQS--NSQNLKSAADTWAGPGFNPFRPVSSPTEHD 134
Query: 42 ----FNFPGVSVSES-------GTESGFNP-----------------FRAEPGMGLGAHE 73
F F G S SE+ G + G NP R E G +
Sbjct: 135 VSSEFGF-GNSRSEAFDFGVSKGCDVGVNPDSRKWNVENEVVEQMKNVRIESGNVFINNN 193
Query: 74 SLEKNKGGILFGSRNGFESCDIGE----LKIEENLRKLKIDGHRGN------------VE 117
N+ +FGS + ES I + L I +N K+ R N V
Sbjct: 194 LNASNRTNFVFGSDHRNESPGIDDNMKNLNINDNEINDKVVDERTNGIAKFRLRSDDNVT 253
Query: 118 SELENELKQKLSKLTFKDSGEKDDVKNFVFSGSKKSSDSFAAA--SELPDQMKNLNI--- 172
S L NEL +KL+ K++ G K SD+F + S +PDQ+KNLNI
Sbjct: 254 SRLPNELNKKLN---IKET-----------EGGTKVSDAFTESLKSAIPDQIKNLNINES 299
Query: 173 -------------------TSKGGSGYIVGESENMLSNEMGRKLKIGSVSSDSSAGQTDM 213
+ +G Y+ GE E++LS+EM KL +GS +SS G +
Sbjct: 300 ADGNETDNKSSVMDGCASVSREGTRSYVGGERESILSSEMECKLNMGSAIEESS-GHAET 358
Query: 214 GRMSSHIFVKDKQSTNLGDKKLHDLGKSVPTEVDFQAGLQGKNSGGGEDPVDKAKDGAIP 273
G SS IF +D Q+ N DKK HD +PTE F G+QG+ + G + +++ A P
Sbjct: 359 GFSSSRIFEEDMQTGNRNDKKFHDFSNRIPTEFTFMEGMQGREAIGSQFHMNQPNVDAQP 418
Query: 274 SETASSSSSFSSSGIPFQSVDNASKVPDVDRTDRMNEFSFMSKQDGMAAPFVGFRTPNQK 333
S +SS+F SSG+ + A + R ++ + F F SKQDG+ +PFV F+TP+ K
Sbjct: 419 SGVGGTSSAFLSSGL---AAGYAFGLLPTGRVEKRDGFIFTSKQDGVGSPFVEFKTPDPK 475
Query: 334 INLFSGAGQEVEFSAKRGSVRDTKVKKKRGKLRKPISIPLWHGQDFVSRDSSSPEDPEPS 393
N+FS Q+VE SAK + K K K ++P + LW GQDFVSR+S S E PEPS
Sbjct: 476 GNIFSCLNQKVEVSAKFKDTKLKKKKGKL---KQPTKVHLWPGQDFVSRESGSREIPEPS 532
Query: 394 ESYSPMDVSPYQETLADTKCSRETSVASDESFSLDNNDASTDSQPAAPNVAVDEELVAAT 453
+SYSPMDVSPYQETL+DT+ SRETSVAS+ES DN ++STD P + A+DE+L+ AT
Sbjct: 533 DSYSPMDVSPYQETLSDTQFSRETSVASEESLVPDNQNSSTDFPPIVSSDAIDEDLIVAT 592
Query: 454 ERMDINDEDVEFRDTKEDHSDRGVGSEVPQDESVSGTETESFKSANEEID---DATDNSA 510
++M+IN+EDV DTK + SD+G G+E P +ES+SG ETESFKSANEEID D SA
Sbjct: 593 QQMNINEEDVNLTDTKRESSDKGSGAENPPEESISGAETESFKSANEEIDFINDIVVTSA 652
Query: 511 ETEASSSAGIQRQDSDSRMQFSFPSHSEDIGGSNFTFAASSASQAS-------------- 556
E EASSS I+RQDSD ++ S P+ S+D+GGS FTF A+S SQAS
Sbjct: 653 ENEASSSTNIERQDSDV-IKSSSPASSQDMGGSGFTFIAAS-SQASSNRQNKKKNCAKVG 710
Query: 557 ------------PLLSSGQE-----------ERGDLFSSRLKGDRNSEVDRGQEIKQEPN 593
P SS + ++ L + NSE RGQEIKQE +
Sbjct: 711 HDPYNFSLNAKVPYASSSSQFTSLPVSPCLGKKVGLSTPIHMVGENSEGSRGQEIKQESD 770
Query: 594 LASAETIAAQEACEKWRL------------------------------------------ 611
L SA ++AAQEACEKWRL
Sbjct: 771 LISAVSVAAQEACEKWRLRGNQAYTHGELSKAEDCYTQGINCVSRSETSRSCLRALMLCY 830
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
SNRAATRM+LGR++DAL DC +A IDP+FLRVQVRAANC LALGE+EDAS+YF+ CLQ
Sbjct: 831 SNRAATRMSLGRIKDALQDCRMAAEIDPNFLRVQVRAANCFLALGEVEDASQYFKKCLQL 890
Query: 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS 731
GSD+CVD+KIA+EAS GLQKAQKVSEC+Q +A+LL+ KT ND E AL +I E L I YS
Sbjct: 891 GSDMCVDRKIAIEASSGLQKAQKVSECLQHAAELLKRKTPNDVESALELIAEGLVIGPYS 950
Query: 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRL 791
EKLLEMKA++LF+LRKYEEVIQLC+QTF AEKNSP LD QS +LD ++ TK SF L
Sbjct: 951 EKLLEMKADSLFLLRKYEEVIQLCDQTFDSAEKNSPLLDTGYQSADLDGTQLTKDSSFCL 1010
Query: 792 WRCCLIFKSYFTLGRLEEAIAALERHE----SGNGGKMLESLIPLAGTVRELLCRKSAGN 847
WRC LI KSYF LG+LEEAIA+LE+ E G K +ESLIPLA TVRELL K+AGN
Sbjct: 1011 WRCHLILKSYFYLGKLEEAIASLEKQEELIVKRCGNKKIESLIPLAATVRELLRHKAAGN 1070
Query: 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD 907
EAFQAG+HSEA+E+YTAALSC VES PFAAIC+CNRAAAYKAL +TDAIADC+LAIALD
Sbjct: 1071 EAFQAGKHSEAIEYYTAALSCNVESRPFAAICYCNRAAAYKALGLVTDAIADCSLAIALD 1130
Query: 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI-EKSNQSGVSDRSINLANDLRQ 966
NYLKAISRRATLYEMIRDY A SD RL+A+LTKQ+ EK++ SG SDRS NLANDLRQ
Sbjct: 1131 KNYLKAISRRATLYEMIRDYGQAVSDLQRLVAVLTKQVEEKTSLSGSSDRSGNLANDLRQ 1190
Query: 967 ARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDN 1026
ARMRL+ +EE ARK+IPLDMY ILGVE S S +DIK+ YRKAALRHHPDKAGQSL R +N
Sbjct: 1191 ARMRLSTIEEAARKEIPLDMYRILGVEPSASASDIKKAYRKAALRHHPDKAGQSLARIEN 1250
Query: 1027 GDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSR 1086
GDD L KEIG E+H A++LFKMI EAYAVLSDP+KRS+YDLEEE RN QKK NGS+TSR
Sbjct: 1251 GDDWLRKEIGEEIHMHADRLFKMIGEAYAVLSDPTKRSQYDLEEEMRNAQKKHNGSSTSR 1310
Query: 1087 THAYAQNYPFERSSSRRQWREVRRSY 1112
T+ AQ+Y FERS SR QWR V RSY
Sbjct: 1311 TYTDAQSYQFERSGSRGQWRGVWRSY 1336
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734955|emb|CBI17189.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/1040 (54%), Positives = 685/1040 (65%), Gaps = 170/1040 (16%)
Query: 179 GYIVGESENMLSNEMGRKLKIGSVSSDSSAGQTDMGRMSSHIFVKDKQSTNLGDKKLHDL 238
GY G +EN L+++M RK+KI + D+S GQT+ + LG +K H++
Sbjct: 40 GYFSGIAENSLADDM-RKMKIRNGVGDTS-GQTN--------------TEKLGGEKFHNV 83
Query: 239 GKSVPTEVDFQAGLQGKNSGGGEDPVDKAKDGAIPSETASSSSSFSSSGIPFQSVDNASK 298
G S+PT+ FQA KN + +N +
Sbjct: 84 GNSIPTKFTFQAVTSVKN----------------------------------LTYENTFQ 109
Query: 299 VPDVDRTDRMNEFSFMSKQDGMAAPFVGFRTPNQKINLFSGAGQEVEFSAKRGSVRDTKV 358
P +D+++ + FSF +K + P V F TPN K++LFS +++EFSAKR +V DT+V
Sbjct: 110 APSMDKSE--DRFSFANKLEERGTPHVDFSTPNPKVDLFSSVNKKIEFSAKRAAVGDTRV 167
Query: 359 KKKRGKLRKPISIPLWHGQDFVSRDSSSPEDPEPSESYSPMDVSPYQETLADTKCSRETS 418
K+++ KL++P W GQDFV R+SSS E+PE SESYSPMDVSPYQETLAD
Sbjct: 168 KRRKEKLKQPNPNQRWLGQDFVLRESSSQENPEASESYSPMDVSPYQETLAD-------- 219
Query: 419 VASDESFSLDNNDASTDSQPAAPNVAVDEELVAATERMDINDEDVEFRDTKE---DHSDR 475
N+ ASTDS N A+DE+LV AT+ ++IN +DV+ R+TKE D D+
Sbjct: 220 ----------NHYASTDSHKTVSNDAIDEDLVVATQCLNINVDDVKGRETKEGDEDCFDQ 269
Query: 476 GVGSEVPQDESVSGTETESFKSANEEID---DATDNSAETEASSSAGIQRQDSDSRMQFS 532
VG+ +ESVSGTETESFKS E+ D D SAETE S + I +Q +D R QF
Sbjct: 270 SVGAGGSLEESVSGTETESFKSLTEQFDINSDIASTSAETEVSLISDIDKQVNDGRTQFC 329
Query: 533 FPSHSEDIGGSNFTFAASSASQ-------------------------------------- 554
F S SED+G +NFTFAASS+ Q
Sbjct: 330 FASSSEDVGSTNFTFAASSSGQDQSAAAMRYHRKKNRIKVAPDSYDSAPNLKVPYTSSSV 389
Query: 555 -------ASPLLSSGQEERGDLFSSRLKGDRN----SEVDRGQEIKQEPNLASAETIAAQ 603
SPL S G+ ++G++ +S KG RN +EVD+ ++IKQE N SA T+AAQ
Sbjct: 390 QFFPLSGTSPLSSQGRGQKGNISTSLCKG-RNGTDSTEVDKQKDIKQEFNSTSAATLAAQ 448
Query: 604 EACEKWRL------------------------------------------SNRAATRMAL 621
EACEKWRL SNRAATRM+L
Sbjct: 449 EACEKWRLRGNQAYTNGDLSKAEDCYTQGVNCISQSETSKSCLRALMLCYSNRAATRMSL 508
Query: 622 GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681
GRMR+AL DC+LA ID +FLRVQVRAA+C+LALGE+EDAS YF+ CLQSG+D CVD+KI
Sbjct: 509 GRMREALGDCLLAAGIDHNFLRVQVRAASCYLALGEVEDASLYFKKCLQSGNDSCVDRKI 568
Query: 682 AVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEA 741
AVEASDGLQK QKVS+CM SA+LL+ +TS D E ALG++DEAL ISS+SEKLLEMKAEA
Sbjct: 569 AVEASDGLQKTQKVSDCMNHSAELLEQRTSRDVETALGILDEALIISSFSEKLLEMKAEA 628
Query: 742 LFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSY 801
LFMLRKYEEVIQLCEQT AEKNSP L ++G LD S +K SFRLWR LIFKSY
Sbjct: 629 LFMLRKYEEVIQLCEQTLGSAEKNSPTLGSDGHLANLDGSGLSKDSSFRLWRVRLIFKSY 688
Query: 802 FTLGRLEEAIAALERH-ESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860
F LGRLE+A+ LE+ E GNG K LES IPLA TVRELL K+AGNEAFQ+GRH+EAVE
Sbjct: 689 FYLGRLEDALTLLEKQKEFGNGNKTLESSIPLAATVRELLRHKNAGNEAFQSGRHAEAVE 748
Query: 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920
HYTAALSC + S PF AICFCNR+AA+KAL I+DAIADC+LAIALDGNYLKAISRRATL
Sbjct: 749 HYTAALSCNIVSRPFTAICFCNRSAAHKALGQISDAIADCSLAIALDGNYLKAISRRATL 808
Query: 921 YEMIRDYDHAASDFHRLIALLTKQI-EKSNQSGVSDRSINLANDLRQARMRLTAVEEEAR 979
+EMIRDY A SD RL++LL+KQ+ EK NQ G DRS + NDLRQA++RL+ +EEE R
Sbjct: 809 FEMIRDYGQATSDLQRLVSLLSKQLEEKVNQPGGYDRSTSFGNDLRQAQLRLSLMEEEDR 868
Query: 980 KDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEV 1039
KDIPLDMYLILGVE S S +DIK+ YRKAALRHHPDK GQSL +S+NGD G WKEI EV
Sbjct: 869 KDIPLDMYLILGVEPSASASDIKKAYRKAALRHHPDKTGQSLAKSENGDGGFWKEIAEEV 928
Query: 1040 HKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERS 1099
H+DA+KLFKMI EAYA+LSDPSKRSRYD EEE RN QK+ NGS+TSR H QN+PFERS
Sbjct: 929 HRDADKLFKMIGEAYAILSDPSKRSRYDHEEEMRNAQKRGNGSSTSRVHTDVQNFPFERS 988
Query: 1100 SSRRQWREVRRSYDNSAARG 1119
SSRRQWREV SY +S++RG
Sbjct: 989 SSRRQWREVWGSYGHSSSRG 1008
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136074|gb|ADN33923.1| DNAJ heat shock N-terminal domain-containing protein [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/1156 (46%), Positives = 685/1156 (59%), Gaps = 170/1156 (14%)
Query: 108 KIDGHRGNVESELENELKQKLSKLTFKDSGEK---------DDVKNFVFSGSKKSSDSFA 158
K+ N+++ + +EL KL L +DSG + D V F K ++ FA
Sbjct: 198 KVGLWNSNIDNPMVSELPNKLEHLNIEDSGHRGIGSAAFKADGVDMFGLDKGKGVTN-FA 256
Query: 159 ---AASELPDQMKNLNITSKGGS------------------GYIVGESENMLSNEMGRKL 197
+A LP+++K LNI S G V + + LS +M ++
Sbjct: 257 IGSSADSLPEKIKGLNIKDTSNSTNINTHKEKFVSERTQTSGNFVEQKDTFLSRKM-EEM 315
Query: 198 KIGSVSSDSSAGQTDMGRMSSHIFVKDKQSTNLGDKKLHDLGKSVPTEVDFQAGLQGKNS 257
K+ + SS G T+ M + ++ + + + T++ Q + KN
Sbjct: 316 KLDK-RTPSSGGITETTEMQNFSYLD------------RNPNQPLATDMKTQKLQECKNM 362
Query: 258 GGGEDPVDKAKDG------AIPSETASSSSSFSSSGIPFQSVDNASKVPDVDRTDRMNEF 311
GG + P KDG A+PS S F++ G FQ+ D +R F
Sbjct: 363 GGNQFPTYAQKDGNDQNNVAMPSSIFHSDKQFNAVGSTFQATD-------TNRNKETYYF 415
Query: 312 SFMSKQDGMAAPFVGFRTPNQKINLFS-GAGQEVEFSAKRGSVRDTKVKKKRGKLRKPIS 370
+KQ+ + FV T + +FS G Q+ EF+A+R R+ K + G+ P +
Sbjct: 416 RSTTKQENPGSSFVECETSDVNPYIFSAGMTQKFEFNAQRDPTREFGPKSRSGRY-NPTT 474
Query: 371 IPLWHGQ---DFVSRDSSSPEDPEPSESYSPMDVSPYQETLADTKCSRETSVASDESFSL 427
+ L Q DFVSRD E + SE YSPMD SPYQETLA S E SV S+ES L
Sbjct: 475 VQLHIDQETRDFVSRDRDPLERDKASEPYSPMDASPYQETLASDPISPENSVTSNESLVL 534
Query: 428 DNNDASTD-SQPAAPNVAVDEELVAATERMDIND-----EDVEFRDTKEDHSDRGVGSEV 481
D+N D S P N +DE+L+ ATE ++I++ +VE D HS+ +G+E
Sbjct: 535 DHNSVEFDESVPEVLNDVIDEDLLNATESLNISEPGLSATEVEGDDGSLYHSNTNLGAEG 594
Query: 482 PQDESVSGTETESFKSANEEIDDATDNSA---ETEASSSAGIQRQDSDSRMQFSFPSHSE 538
P DESVSG +TES+KSANEE+D + D +A ETEASSS ++RQDSD R QFSF S+SE
Sbjct: 595 PVDESVSGADTESYKSANEELDLSGDLAAISEETEASSSLKLERQDSDGRKQFSFASNSE 654
Query: 539 DIGGSNFTFAASSASQAS------------------------------PL---------- 558
D SNF FAASSA+Q PL
Sbjct: 655 DASRSNFIFAASSAAQGQSSASKRQFKKKSWGKVGQDSHMSPTIGIEVPLSSSSAQFVTF 714
Query: 559 ------LSSGQEERGDLFSSRLKGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRL- 611
+SS + ++GD ++ K S V++G E+KQEP A T+AAQEACEKWRL
Sbjct: 715 SGNSSPISSQKSQKGDSSMAQQKYGVGSWVNKGPEMKQEPVSTMAATVAAQEACEKWRLR 774
Query: 612 -----------------------------------------SNRAATRMALGRMRDALSD 630
SNRAATRM+LGR+RDA+SD
Sbjct: 775 GNQAYASGDLSKAEDHYTQGVNCISRDESSRSCLRALMLCYSNRAATRMSLGRLRDAISD 834
Query: 631 CMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690
C +A AIDP F +V +RAANC+L LGE+++A +YF+ CLQ G+D+CVD+KI VEASDGLQ
Sbjct: 835 CTMAAAIDPGFYKVYLRAANCYLGLGEVDNAIQYFKRCLQPGNDICVDRKIVVEASDGLQ 894
Query: 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEE 750
AQKVSE M+R A+L TS D + AL +I EAL ISS SEKL EMKAEALF+LR+YEE
Sbjct: 895 NAQKVSEFMKRLAELQLRSTSGDMQSALELISEALVISSCSEKLHEMKAEALFVLRRYEE 954
Query: 751 VIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEA 810
VIQ CEQT AEKNSP D Q+ LD SE +K FR+WRC L KSYF LG+LEE
Sbjct: 955 VIQFCEQTLDSAEKNSPSEDIGSQTSNLDDSEISKKFYFRIWRCRLTLKSYFLLGKLEEG 1014
Query: 811 IAALERHES------GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTA 864
+A+LE E+ G G K LES IPLA T++ELL K+AGNEAFQ GR++EAVEHYTA
Sbjct: 1015 LASLEMQEARASAMIGTGRKFLESSIPLATTMKELLRHKAAGNEAFQQGRYAEAVEHYTA 1074
Query: 865 ALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924
ALSC VES PF A+CFCNRAAAYKA + DAIADC+LAIALD Y KAISRRATLYEMI
Sbjct: 1075 ALSCNVESRPFTAVCFCNRAAAYKAQGQVIDAIADCSLAIALDEEYFKAISRRATLYEMI 1134
Query: 925 RDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPL 984
RDY AA+D +L++L +K++EK+ Q SDRS NDLRQ R+RL VEEE+RK+IPL
Sbjct: 1135 RDYGQAANDLQKLVSLFSKELEKTYQYATSDRSSTSTNDLRQTRLRLAEVEEESRKEIPL 1194
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
DMYLILGV+ S S A+IK+ YRKAALR+HPDKAGQSL R+DNGD+ LWK+I VHKDA+
Sbjct: 1195 DMYLILGVDPSASSAEIKKAYRKAALRYHPDKAGQSLARADNGDNVLWKDIAGGVHKDAD 1254
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHA-YAQNYPFERSSSRR 1103
KLFKMI EAYAVLSDP KRSRYD EEE R QKK+NGS+T R+H Q++ FER+S R
Sbjct: 1255 KLFKMIGEAYAVLSDPLKRSRYDAEEEMRTAQKKRNGSSTPRSHTDVHQSHQFERNSVRP 1314
Query: 1104 QWREVRRSYDNSAARG 1119
QWR++ RSY ARG
Sbjct: 1315 QWRDLWRSY---GARG 1327
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444895|ref|XP_004140209.1| PREDICTED: uncharacterized protein LOC101209437 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/1152 (46%), Positives = 677/1152 (58%), Gaps = 161/1152 (13%)
Query: 108 KIDGHRGNVESELENELKQKLSKLTFKDSGEKD---------DVKNFVFSGSKKSSDSFA 158
K+ NV++ + +EL KL L +DSG +D V F K ++S
Sbjct: 201 KVGLWNSNVDNPIVSELPNKLEHLNIEDSGHRDIGSAAFKADGVDMFGLDRGKGVTNSAV 260
Query: 159 AAS--ELPDQMKNLNITSKGGSGYIVGESENMLSNE---------------MGRKLKIGS 201
+S LP+++K LNI S I E +S + RK++
Sbjct: 261 GSSADSLPEKIKGLNIKGTSNSTNINTHKEKFVSERTQRTSGNFVEQKDIFLSRKMEEMK 320
Query: 202 VS--SDSSAGQTDMGRMSSHIFV----KDKQSTNLGDKKLHDLGKSVPTEVDFQAGLQGK 255
+ + SS G T+ M + ++ +TN+ +KL + K
Sbjct: 321 LDKRTPSSGGITETTEMQNFSYLDRNPNQPLATNMKSQKLQEC----------------K 364
Query: 256 NSGGGEDPVDKAKDGAIPSETASSSSSFSSSGIPFQSVDNASKVPDVDRTDRMNEFSFMS 315
+ GG + P KDG + A SS F S I F +V + + D +R F +
Sbjct: 365 DMGGNQFPSYAQKDGNDQNNVAMPSSIFHSD-IQFNAVGSTFQATDTNRNKETCYFRSTT 423
Query: 316 KQDGMAAPFVGFRTPNQKINLFS-GAGQEVEFSAKRGSVRDTKVKKKRGKLRKPISIPL- 373
KQ+ + FV T + +FS G Q +F+A+R R+ K + G+ ++ L
Sbjct: 424 KQENPGSSFVECETSDVNPYIFSAGMTQNFQFNAQRDPTREFGPKSRSGRYNS-TTVQLH 482
Query: 374 --WHGQDFVSRDSSSPEDPEPSESYSPMDVSPYQETLADTKCSRETSVASDESFSLDNND 431
QDFVSRD E + SE YSPMD SPYQETLA S E SV S+ES LD+N
Sbjct: 483 IDQETQDFVSRDRDPLERDKASEPYSPMDASPYQETLASDPISPENSVTSNESLVLDHNS 542
Query: 432 ASTD-SQPAAPNVAVDEELVAATERMDINDEDVEFRDTKEDH-----SDRGVGSEVPQDE 485
D S P N +DE+L+ ATE ++I++ + + + DH S+ G+E P DE
Sbjct: 543 VEFDESVPEVLNDVIDEDLLNATESLNISEPGLSATEVEVDHGSLYHSNTNQGAEGPVDE 602
Query: 486 SVSGTETESFKSANEEIDDATDNSA---ETEASSSAGIQRQDSDSRMQFSFPSHSEDIGG 542
S+SG +TES+KSANEE+D + D +A ETEASSS ++RQDSD R QFSF S+SED
Sbjct: 603 SISGADTESYKSANEELDLSGDLAAISEETEASSSLKLERQDSDGRKQFSFASNSEDASR 662
Query: 543 SNFTFAASSASQAS------------------------------PL-------------- 558
SNF FAAS A+Q PL
Sbjct: 663 SNFIFAASFAAQGQSSASKRQYKKKSWGKVGQDSHMSPTIGIEVPLSSSSAQFVTFSGNS 722
Query: 559 --LSSGQEERGDLFSSRLKGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRL----- 611
+SS + ++GD ++ K S V++G E+KQEP T+AAQEACEKWRL
Sbjct: 723 SPISSQKSQKGDSSMAQHKYGVGSWVNKGPEMKQEPVSTIEATVAAQEACEKWRLRGNQA 782
Query: 612 -------------------------------------SNRAATRMALGRMRDALSDCMLA 634
SNRAATRM+LGR+RDA+SDC +A
Sbjct: 783 YASGDLSKAEDHYTQGVNCISRDESSRSCLRALMLCYSNRAATRMSLGRLRDAISDCTMA 842
Query: 635 VAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694
AIDP F +V +RAANC+L LGE+E+A +YF+ CLQ G+D+CVD+K+ VEASDGLQ AQK
Sbjct: 843 AAIDPGFYKVYLRAANCYLGLGEVENAIQYFKRCLQPGNDICVDRKVVVEASDGLQNAQK 902
Query: 695 VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754
VSE +R A+L TS+D + AL +I EAL ISS SEKL EMKAEALF+L++YEEVIQ
Sbjct: 903 VSEFTKRLAELQLRSTSSDMQSALELISEALVISSCSEKLHEMKAEALFVLQRYEEVIQF 962
Query: 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAAL 814
CEQT + AEKN P D Q+ LD SE +K FR+WRC L KSYF LG+LEE +A+L
Sbjct: 963 CEQTLNSAEKNYPSEDIGSQTSNLDDSEISKKFYFRIWRCRLTLKSYFLLGKLEEGLASL 1022
Query: 815 ERHES------GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSC 868
E E GNG K LES IPLA T+RELL K+AGNEAFQ GR++EAVEHYTAALSC
Sbjct: 1023 EMQEERASAMIGNGRKFLESSIPLAITMRELLRHKAAGNEAFQQGRYAEAVEHYTAALSC 1082
Query: 869 TVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYD 928
VES PF A+CFCNRAAAYKA + DAIADC+LAIALD Y KAISRRATLYEMIRDY
Sbjct: 1083 NVESRPFTAVCFCNRAAAYKAQGQVIDAIADCSLAIALDEEYFKAISRRATLYEMIRDYG 1142
Query: 929 HAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYL 988
AA+D +L+++ +K++EK+ Q SDRS NDLRQ R+RL VEEE+RK+IPLDMYL
Sbjct: 1143 QAANDLQKLVSVFSKELEKTYQYATSDRSGTSTNDLRQTRLRLAEVEEESRKEIPLDMYL 1202
Query: 989 ILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFK 1048
ILGV+ S S A+IK+ YRKAALR+HPDKAGQSL R+DNGD+ LWK+I VHKDA+KLFK
Sbjct: 1203 ILGVDPSASSAEIKKAYRKAALRYHPDKAGQSLARADNGDNVLWKDIAGGVHKDADKLFK 1262
Query: 1049 MIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHA-YAQNYPFERSSSRRQWRE 1107
MI EAYAVLSDP KRSRYD EEE R QKK+NGS+T R+H Q++ FER+S R QWR+
Sbjct: 1263 MIGEAYAVLSDPIKRSRYDAEEEMRTAQKKRNGSSTPRSHTDVHQSHQFERNSVRPQWRD 1322
Query: 1108 VRRSYDNSAARG 1119
+ RSY ARG
Sbjct: 1323 LWRSY---GARG 1331
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449482523|ref|XP_004156311.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101209437 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/1152 (45%), Positives = 676/1152 (58%), Gaps = 161/1152 (13%)
Query: 108 KIDGHRGNVESELENELKQKLSKLTFKDSGEKD---------DVKNFVFSGSKKSSDSFA 158
K+ NV++ + +EL KL L +DSG +D V F K ++S
Sbjct: 201 KVGLWNSNVDNPIVSELPNKLEHLNIEDSGHRDIGSAAFKADGVDMFGLDRGKGVTNSAV 260
Query: 159 AAS--ELPDQMKNLNITSKGGSGYIVGESENMLSNE---------------MGRKLKIGS 201
+S LP+++K LNI S I E +S + RK++
Sbjct: 261 GSSADSLPEKIKGLNIKGTSNSTNINTHKEKFVSERTQRTSGNFVEQKDIFLSRKMEEMK 320
Query: 202 VS--SDSSAGQTDMGRMSSHIFV----KDKQSTNLGDKKLHDLGKSVPTEVDFQAGLQGK 255
+ + SS G T+ M + ++ +TN+ +KL + K
Sbjct: 321 LDKRTPSSGGITETTEMQNFSYLDRNPNQPLATNMKSQKLQEC----------------K 364
Query: 256 NSGGGEDPVDKAKDGAIPSETASSSSSFSSSGIPFQSVDNASKVPDVDRTDRMNEFSFMS 315
+ GG + P KDG + A SS F S I F +V + + D +R F +
Sbjct: 365 DMGGNQFPSYAQKDGNDQNNVAMPSSIFHSD-IQFNAVGSTFQATDTNRNKETCYFRSTT 423
Query: 316 KQDGMAAPFVGFRTPNQKINLFS-GAGQEVEFSAKRGSVRDTKVKKKRGKLRKPISIPL- 373
KQ+ + FV T + +FS G Q +F+A+R R+ K + G+ ++ L
Sbjct: 424 KQENPGSSFVECETSDVNPYIFSAGMTQNFQFNAQRDPTREFGPKSRSGRYNS-TTVQLH 482
Query: 374 --WHGQDFVSRDSSSPEDPEPSESYSPMDVSPYQETLADTKCSRETSVASDESFSLDNND 431
QDFVSRD E + SE YSPMD SPYQETLA S E SV S+ES LD+N
Sbjct: 483 IDQETQDFVSRDRDPLERDKASEPYSPMDASPYQETLASDPISPENSVTSNESLVLDHNS 542
Query: 432 ASTD-SQPAAPNVAVDEELVAATERMDINDEDVEFRDTKEDH-----SDRGVGSEVPQDE 485
D S P N +DE+L+ ATE ++I++ + + + DH S+ G+E P DE
Sbjct: 543 VEFDESVPEVLNDVIDEDLLNATESLNISEPGLSATEVEVDHGSLYHSNTNQGAEGPVDE 602
Query: 486 SVSGTETESFKSANEEIDDATDNSA---ETEASSSAGIQRQDSDSRMQFSFPSHSEDIGG 542
S+SG +TES+KSANEE+D + D +A ETEASSS ++RQDSD R QFSF S+SED
Sbjct: 603 SISGADTESYKSANEELDLSGDLAAISEETEASSSLKLERQDSDGRKQFSFASNSEDASR 662
Query: 543 SNFTFAASSASQAS------------------------------PL-------------- 558
SNF FAAS A+Q PL
Sbjct: 663 SNFIFAASFAAQGQSSASKRQYKKKSWGKVGQDSHMSPTIGIEVPLSSSSAQFVTFSGNS 722
Query: 559 --LSSGQEERGDLFSSRLKGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRL----- 611
+SS + ++GD ++ K S V++G E+KQEP T+AAQEACEKWRL
Sbjct: 723 SPISSQKSQKGDSSMAQHKYGVGSWVNKGPEMKQEPVSTIEATVAAQEACEKWRLRGNQA 782
Query: 612 -------------------------------------SNRAATRMALGRMRDALSDCMLA 634
SNRAATRM+LGR+RDA+SDC +A
Sbjct: 783 YASGDLSKAEDHYTQGVNCISRDESSRSCLRALMLCYSNRAATRMSLGRLRDAISDCTMA 842
Query: 635 VAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694
AIDP F +V +RAANC+L LGE+E+A +YF+ CLQ G+D+CVD+K+ VEASDGLQ AQK
Sbjct: 843 AAIDPGFYKVYLRAANCYLGLGEVENAIQYFKRCLQPGNDICVDRKVVVEASDGLQNAQK 902
Query: 695 VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754
VSE +R A+L TS+D + AL +I EAL ISS SEKL EMKAEALF+L++YEEVIQ
Sbjct: 903 VSEFTKRLAELQLRSTSSDMQSALELISEALVISSCSEKLHEMKAEALFVLQRYEEVIQF 962
Query: 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAAL 814
CEQT + A KN P D Q+ LD SE +K FR+WRC L KSYF LG+LEE +A+L
Sbjct: 963 CEQTLNSAXKNYPSEDIGSQTSNLDDSEISKKFYFRIWRCRLTLKSYFLLGKLEEGLASL 1022
Query: 815 ERHES------GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSC 868
E E GNG K LES IPLA T+RELL K+AGNEAFQ GR++EAVEHYTAALSC
Sbjct: 1023 EMQEERASAMIGNGRKFLESSIPLAITMRELLRHKAAGNEAFQQGRYAEAVEHYTAALSC 1082
Query: 869 TVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYD 928
VES PF A+CFCNRAAAYKA + DAIADC+LAIALD Y KAISRRATLYEMIRDY
Sbjct: 1083 NVESRPFTAVCFCNRAAAYKAQGQVIDAIADCSLAIALDEEYFKAISRRATLYEMIRDYG 1142
Query: 929 HAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYL 988
AA+D +L+++ +K++EK+ Q SDRS NDLRQ R+RL VEEE+RK+IPLDMYL
Sbjct: 1143 QAANDLQKLVSVFSKELEKTYQYATSDRSGTSTNDLRQTRLRLAEVEEESRKEIPLDMYL 1202
Query: 989 ILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFK 1048
ILGV+ S S A+IK+ YRKAALR+HPDKAGQSL R+DNGD+ LWK+I VHKDA+KLFK
Sbjct: 1203 ILGVDPSASSAEIKKAYRKAALRYHPDKAGQSLARADNGDNVLWKDIAGGVHKDADKLFK 1262
Query: 1049 MIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHA-YAQNYPFERSSSRRQWRE 1107
MI EAYAVLSDP KRSRYD EEE R QKK+NGS+T R+H Q++ FER+S R QWR+
Sbjct: 1263 MIGEAYAVLSDPIKRSRYDAEEEMRTAQKKRNGSSTPRSHTDVHQSHQFERNSVRPQWRD 1322
Query: 1108 VRRSYDNSAARG 1119
+ RSY ARG
Sbjct: 1323 LWRSY---GARG 1331
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540948|ref|XP_003538946.1| PREDICTED: uncharacterized protein LOC100800435 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/1221 (44%), Positives = 705/1221 (57%), Gaps = 211/1221 (17%)
Query: 10 FSFNTRSVSNSSKPTRPRLHKTRKQSKSNSQNFN------FPGVSVSESGTESGFNPFRA 63
F+F+T SVS S RPR K RK +N+ FN +V+ + + F A
Sbjct: 29 FTFSTPSVSGLS---RPRFVKVRK--PNNAPAFNPSRNGAAAAANVNAAFATTDFASRIA 83
Query: 64 EPGMGLGAHESLEKNKGGILFGSRNGFESCDIGELKIEENLRKLKIDGHRGNVESELENE 123
+P L KG F + +S + E + E + LKI + + +L NE
Sbjct: 84 DPFRNLKIDA-----KGEFAFATN---DSSRVDENSVSEQINNLKIVTDNDDSD-DLRNE 134
Query: 124 LKQKLSKLTFKDSGEKDDVKNFVFSGSKKSSDSFAAASELPDQMKNLNITSKGGSGYI-- 181
LK+KLS +K G ++ + +A+E+ QMK LN+ S +
Sbjct: 135 LKKKLS------------IKE---GGGSNAAVAENSANEVLYQMKKLNMNDAISSSNVHN 179
Query: 182 -VGESENMLSNEMGRKLKIGSVSSDSSAGQTDMGRMSSHIFVKDKQSTNLGDKKLHDLGK 240
G E L N + + + + D+ R + N+ +K D K
Sbjct: 180 SAGHVEPSLEN-------VTTFRNRETEAAEDLLRKFDKL--------NIVKEKKEDCDK 224
Query: 241 SVPTEVD-FQAGLQGKNSGGGEDPV--DKAKDGAIPSETASSSSSFSSSGIPFQSVDNAS 297
P + F G+ + + GG D S AS S F +G+
Sbjct: 225 --PNLCNPFVEGIHPRVASGGAQVASEDFGMSQGAASALASVSVFFQPAGV--------- 273
Query: 298 KVPDVDRTDRMNEFSFMSKQDGMAAPFVGFRTPNQKINLFSGAGQEVEFSAKRGSVRDTK 357
+ EF F KQD + FV F+TP +I G+E + K VR
Sbjct: 274 --------GKREEFVFTGKQDISGSSFVEFKTPAPQI------GKEGKLKEKGSKVR--- 316
Query: 358 VKKKRGKLRKPISIPLWHGQDFVSRDSSSPEDPEPSESYSPMDVSPYQETLADTKCSRET 417
+ K R K + S P WHGQ FV ++S P+ SPMDVS YQE LA+ + SRE
Sbjct: 317 MNKSREKPKHYSSAPPWHGQSFVLKESV----PQDELQGSPMDVSQYQEKLAENERSREN 372
Query: 418 SVASDESFSLDNNDASTDSQPAAPNVAVDEELVAATERMDINDEDVEFRDTKEDHSDRGV 477
S+ S+ESFS+DNN+ DS+P + +DE+L+ A E ++IN DV RDTKE+ S+ +
Sbjct: 373 SLTSNESFSVDNNNTVNDSEPTSSIDPIDEDLIGAAESLNINGGDVAHRDTKEESSEDQM 432
Query: 478 GS----EVPQDESVSGTETESFKSANEEID---DATDNSAETEASSSAGIQRQDSDSRMQ 530
E P+DESVSG ETESFKSAN+E+D DA+ SAETEA DSD +
Sbjct: 433 CENSYVEDPKDESVSGVETESFKSANDEVDITSDASGVSAETEA--------HDSDRMLH 484
Query: 531 FSFPSHSEDIGGSNFTF------------------------------------------A 548
S ++ S FTF A
Sbjct: 485 LDSALSSRNVNVSGFTFAAASSAEAQSSSPKRLHKKKNVGHDPYNYTPNIKVPYSSSSVA 544
Query: 549 ASSASQASPLLSSGQEERGDLFSSRLKGDRNSEVDRGQE--IKQEPNLASAETIAAQEAC 606
S S S L +SGQ + ++ S K S+ D QE IK+ AQE C
Sbjct: 545 FSPFSGTSSLFTSGQSLKPEVSSPPPK---TSDSDENQEKGIKE-----------AQEGC 590
Query: 607 EKWRL-----------------------------------------SNRAATRMALGRMR 625
E+WRL SN AAT M+LGRMR
Sbjct: 591 ERWRLRGNQAYKKGDLSTAENCYKQGLSCISKEASRSCLRALLLCYSNLAATHMSLGRMR 650
Query: 626 DALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685
DAL DC +A ID +FL+VQ+RAANC+LALGE+E AS+YF+ CLQSG+DVCVD+KIAVEA
Sbjct: 651 DALEDCKMAAEIDQNFLKVQLRAANCYLALGEVEGASQYFKRCLQSGTDVCVDRKIAVEA 710
Query: 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML 745
SDGLQKAQKVS+ + SAQLLQ +T++DAE AL I++AL ISSYSEKLLEMKAEAL ML
Sbjct: 711 SDGLQKAQKVSDLINHSAQLLQRRTASDAERALEHINKALIISSYSEKLLEMKAEALLML 770
Query: 746 RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLG 805
+YEEVIQLC +T AEKN+ PLDA + +LD+S+ +K FR+WRC ++ K+Y LG
Sbjct: 771 CRYEEVIQLCGKTLDSAEKNACPLDAGCKVTDLDNSQLSKGFYFRIWRCSMMLKAYIHLG 830
Query: 806 RLEEAIAALERHE------SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAV 859
+ EE ++ LE+ E + +G K+L+SLIPLA +RE L K+AGN AFQAGRH+EAV
Sbjct: 831 KFEEGLSLLEQQEEKMSAINKSGSKVLDSLIPLAAIIREPLHHKTAGNAAFQAGRHAEAV 890
Query: 860 EHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919
E+YT+ALSC VES PFAA+C+CNRAAAYKAL ITDAIADC+LAIALDGNYLKA+SRRAT
Sbjct: 891 EYYTSALSCNVESRPFAAVCYCNRAAAYKALGQITDAIADCSLAIALDGNYLKALSRRAT 950
Query: 920 LYEMIRDYDHAASDFHRLIALLTKQIE-KSNQSGVSDRSINLANDLRQARMRLTAVEEEA 978
L+EMIRDY AASD RL++LL+K +E +NQ G+SD+SI+ NDL+ +R+RL +EEEA
Sbjct: 951 LFEMIRDYAQAASDLRRLVSLLSKGVEDNANQLGISDKSIHYTNDLKHSRVRLLEMEEEA 1010
Query: 979 RKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAE 1038
RK+IPLDMYLILGVE SVS+++IK+ YRKAALRHHPDKAGQSL +SDNGDD +WK I E
Sbjct: 1011 RKEIPLDMYLILGVEPSVSISEIKKAYRKAALRHHPDKAGQSLTKSDNGDDQIWKVIAEE 1070
Query: 1039 VHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFER 1098
VH+DA++LFK+I EAYAVLSDP+KR+RYD EEE RN+QK+++G +T+ AQ YPFE+
Sbjct: 1071 VHRDADRLFKIIGEAYAVLSDPAKRTRYDAEEEMRNSQKRRHGP-IGKTNVDAQYYPFEQ 1129
Query: 1099 SSSRRQWREVRRSYDNSAARG 1119
SSR+QWR+V RSY NS+ RG
Sbjct: 1130 -SSRKQWRDVYRSYGNSSFRG 1149
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544355|ref|XP_003540618.1| PREDICTED: uncharacterized protein LOC100790770 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/887 (52%), Positives = 596/887 (67%), Gaps = 92/887 (10%)
Query: 310 EFSFMSKQDGMAAPFVGFRTPNQKINLFSGAGQEVEFSAKRGSVRDTKVKKKRGKLRKPI 369
EF F KQD ++ FV F TP KI G+E + K VR + K R K +
Sbjct: 271 EFVFTGKQDISSSSFVEFNTPQPKI------GKEGKLKEKGSKVR---INKSREKQKHYS 321
Query: 370 SIPLWHGQDFVSRDSSSPEDPEPSESYSPMDVSPYQETLADTKCSRETSVASDESFSLDN 429
S W+GQ FV ++S ++P+ S PMDVSPYQE L++ + SRE S+AS+ESFS+DN
Sbjct: 322 SAQPWYGQGFVLKESVPQDEPQGS----PMDVSPYQEKLSENERSREDSLASNESFSVDN 377
Query: 430 NDASTDSQPAAPNVAVDEELVAATERMDINDEDVEFRDTKEDHSDRGVGS----EVPQDE 485
N+ DS+P + +DE+L+AA + +DIN DV RDTKE+ S+ + E P+DE
Sbjct: 378 NNIVNDSEPTSFIDPIDEDLIAAAKSLDINGGDVAHRDTKEESSEDQMRENSCVEDPKDE 437
Query: 486 SVSGTETESFKSANEEID---DATDNSAETEAS--------SSAGIQRQDSDSRMQFSFP 534
S+SG ETESFKSAN+E+D D T SAET A SA R + S F+
Sbjct: 438 SISGVETESFKSANDEVDITSDVTGVSAETGAHDSDRMLHLESALSSRNVNGSGFTFAAA 497
Query: 535 SHSE-------------DIGGSNFTF-------------AASSASQASPLLSSGQEERGD 568
S +E ++G ++ + A S S S L + GQ +
Sbjct: 498 SSTEAQSCSPKRLHKKKNVGHDSYNYTPNIKVPYSSTSVAFSPFSGTSSLFTPGQSLKPK 557
Query: 569 LFSSRLK---GDRNSEVD-------------RGQEIKQEPNLASAETIAAQ--------- 603
+ S K D N E + RG + ++ +L++AE Q
Sbjct: 558 VSSPPPKTSDSDENQEKEIKEAEEACERWRLRGNQAYKKGDLSTAENCYKQGLSCISKEA 617
Query: 604 -EACEKWRL---SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIE 659
+C + L SN AAT M+LGRMRDAL DC +A ID +FL+VQ+RAANC+LALGE+E
Sbjct: 618 SRSCLRALLLCYSNLAATHMSLGRMRDALEDCKMAAEIDQNFLKVQLRAANCYLALGEVE 677
Query: 660 DASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALG 719
AS+YF+ CLQSG++VCVD+KIAVEASDGLQKAQKVS+ + SAQLLQ +T++ AE AL
Sbjct: 678 GASQYFKRCLQSGTNVCVDRKIAVEASDGLQKAQKVSDVINHSAQLLQRRTASYAERALE 737
Query: 720 VIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELD 779
I+EAL ISSYSEKLLEMKAEAL ML +YEEVIQLC++T AEKN+ PLDA + +LD
Sbjct: 738 HINEALIISSYSEKLLEMKAEALLMLCRYEEVIQLCDKTLDSAEKNACPLDAGCKVTDLD 797
Query: 780 SSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHE------SGNGGKMLESLIPLA 833
+S+ +K FR+WRC ++ K+Y LG+ EE ++ LE+ E + +G K+L+SL PLA
Sbjct: 798 NSQLSKGFYFRIWRCSMMLKAYIHLGKFEEGLSLLEQQEEKVSAINKSGSKVLDSLTPLA 857
Query: 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHI 893
+RE L K+AGN AFQAGRH+EAVE+YT+ALSC VES PFAA+C+CNRAAAYKAL I
Sbjct: 858 AIIREPLHHKTAGNAAFQAGRHAEAVEYYTSALSCNVESRPFAAVCYCNRAAAYKALGQI 917
Query: 894 TDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE-KSNQSG 952
TDAIADC+LAIALDGNYLKA+SRRATL+EMIRDY AASD RL++LL+K +E +NQ G
Sbjct: 918 TDAIADCSLAIALDGNYLKALSRRATLFEMIRDYAQAASDLRRLLSLLSKGVEDNANQLG 977
Query: 953 VSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRH 1012
+SD+SIN NDL+Q R+RL +EEEARK+IPLDMYLILGVE SVS+++IK+ YRKAALRH
Sbjct: 978 ISDKSINYTNDLKQNRVRLLEMEEEARKEIPLDMYLILGVEPSVSISEIKKAYRKAALRH 1037
Query: 1013 HPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEET 1072
HPDKAGQSL ++DNGDD +WK I EVH D ++LFK+I EAYAVLSDP+KR+RYD EEE
Sbjct: 1038 HPDKAGQSLTKNDNGDDQIWKVIAEEVHGDVDQLFKIIGEAYAVLSDPAKRARYDAEEEM 1097
Query: 1073 RNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYDNSAARG 1119
RN+QK+++G + AQ YPFE+ S+RRQWREV RSY NS+ RG
Sbjct: 1098 RNSQKRRHGP-IGKNSVDAQYYPFEQ-SNRRQWREVNRSYGNSSFRG 1142
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811377|ref|XP_002873572.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319409|gb|EFH49831.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/1239 (42%), Positives = 694/1239 (56%), Gaps = 266/1239 (21%)
Query: 11 SFNTRSVSNSSKP-TRPRLHKTRKQSKSNSQNFNFPGVSVSESGTESGFNPFR------- 62
SFN+ SS ++PR K R+Q KS QN G S S G FNPF
Sbjct: 25 SFNSAPFPRSSSGLSKPRFSKVRRQVKS--QNLKPSGTSDSIPG--QSFNPFHFRGSFAG 80
Query: 63 ----AEPGMGLGAHESLEKNKGGILFGSRNGFESCDIGELKIEENLRKLKIDGHRGNVES 118
+E G G ++E G +FGS D+G+L +E + G R E
Sbjct: 81 DPTPSEIGFGRSSNE-------GFVFGS------TDVGKLHSDEEI------GKRVMEEM 121
Query: 119 E-LENELKQKLSKLTFKDSGEKDDVKN----FVFSGSKKSSDSFAAASELPDQMKN-LNI 172
E L+ E + K S+L +D+KN F F K S+ FAA ELP + N L I
Sbjct: 122 EKLKIESEGKASRLP-------EDMKNLNSSFSFGVKKGSNSVFAAKDELPTLLSNKLTI 174
Query: 173 -TSKGGSGYIVGES-----------------------------ENMLSNEMGRKLKIGSV 202
+S +G+++ ES E +LS+++ RKL + S+
Sbjct: 175 DSSSRSTGHVIQESMEKLNISERVTDQRHSNNVKSKVSMDYVGEKILSDDLSRKLSVASM 234
Query: 203 SSDSSAGQTDMGRMSSHIFVKDKQSTNLGDKKLHDLGKSVPTEVDFQAGLQGKNSGGGED 262
++D G +S D ++ KK+HD S P F
Sbjct: 235 TTD--------GNLSG-----DSVQGSVNGKKVHDFNSSCPMNYSFV------------- 268
Query: 263 PVDKAKDGAIPSETASSSSSFSSSGIPFQSVDNASKVPDVDRTDRMNEFSFMSKQDGMAA 322
G PS+ NA V DV + +EF+F+S QD
Sbjct: 269 -------GTEPSQNL-----------------NARNVHDVSSSVNTSEFNFVSNQDSRGT 304
Query: 323 PFVGFRTPNQKINLFSGAGQEVEFSAKRGSVRDTKVKKKRGKLRKPISIPLWHGQDFVSR 382
F+ F+TPN K+N FS Q++ F+AK+ SV T+ ++K GK +P+ + L G++F
Sbjct: 305 GFMEFKTPNSKVNPFSSLDQKLGFNAKKDSVGATRARRKGGK--QPVKVQLNIGREFAFA 362
Query: 383 DSSSPEDP-EPSESYSPMDVSPYQETLADTKCSRETSVASDESFSLDNNDASTDSQPAAP 441
+S++P E E+YSPMD+SPY+ T D D S D P AP
Sbjct: 363 ESATPNGSNEAPEAYSPMDISPYEVTE-------------------DCGDFSADIPPTAP 403
Query: 442 NVAVDEELVAATERMDINDED-VEFRDTKEDHSDRGVGSEVPQDESVSGTETESFKSANE 500
N D +LVAATERM+IN+ D + KE ++ + E + S+SG ETESFKSA E
Sbjct: 404 NDLFDADLVAATERMEINEGDEINNYQAKEFNTGKCADHEDLAEGSISGAETESFKSAAE 463
Query: 501 EIDDATDN---SAETEASS------------------------------SAGIQRQDSDS 527
E++ +++ ++E+E +S +G+Q Q S S
Sbjct: 464 EMETSSETFATASESEVTSRYRSDRKENDDHSLSNTDAASSSFTFSASSFSGVQGQLSTS 523
Query: 528 RMQFSFPSHSEDIGGSNFTFAASS-----ASQASPL------LSSGQEERGDLFSSRLKG 576
+ + + + +G + ++ +SQ SPL L +G+ D + K
Sbjct: 524 K-RINRKKNPIKLGQDPYILIPNATLPLKSSQHSPLTGVQSHLPAGKPSERDPLTRLHKP 582
Query: 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRL------------------------- 611
+S +D+ + K N+A QEACEKWRL
Sbjct: 583 INSSVMDKARIEKDVSNVA-------QEACEKWRLRGNNAYKIGDLSRAEESYTQGIDSV 635
Query: 612 -----------------SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA 654
SNRAATRMALGRMR+A++DC +A +ID +FL+VQVRA NC+L+
Sbjct: 636 PRIETSRNCLRALMLCYSNRAATRMALGRMREAIADCTMASSIDSNFLKVQVRAGNCYLS 695
Query: 655 LGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDA 714
LGEIEDAS+YF+ CLQSGS++CVD+KI VEAS+GLQKAQ+VSECM + + LQ +TS DA
Sbjct: 696 LGEIEDASRYFKKCLQSGSEICVDRKIIVEASEGLQKAQRVSECMHEAGRRLQLRTSTDA 755
Query: 715 EIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQ 774
E AL +++E+L ISSYSEKLL MK EAL ML KYE I+LCEQT A KNS P
Sbjct: 756 EKALEILEESLLISSYSEKLLTMKGEALLMLEKYEAAIKLCEQTVDLAGKNSLP------ 809
Query: 775 SMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES------GNGGKMLES 828
DS ++ K +FR+W+C ++ KSYF +G+LEEAIA+LE+ E +G K LES
Sbjct: 810 ----DSHDTPKDTNFRIWQCHVMLKSYFHMGKLEEAIASLEKQEQLLSATKRDGNKTLES 865
Query: 829 LIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYK 888
IPLA T+RELL KSAGNEAFQ+GRH+EAVEHYTAAL+C VES PF A+CFCNRAAAYK
Sbjct: 866 SIPLAATIRELLRLKSAGNEAFQSGRHTEAVEHYTAALACNVESRPFTAVCFCNRAAAYK 925
Query: 889 ALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948
AL +DAIADC+LAIALD NY KAISRRATL+EMIRDY AASD R + +LTKQ+E+
Sbjct: 926 ALGQYSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDTERYVNILTKQMEEK 985
Query: 949 NQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKA 1008
SG+ DR ++AND+RQAR+RL+ +EE++RK+ LDMYL+LGV S S +DI++ YRKA
Sbjct: 986 T-SGIIDRFTSMANDIRQARIRLSELEEKSRKESSLDMYLVLGVVPSCSASDIRKAYRKA 1044
Query: 1009 ALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDL 1068
AL+HHPDKAGQSL R++ D+ LWKEIG EV KD +KLFKMI EAYAVLSDP+KRS+YDL
Sbjct: 1045 ALKHHPDKAGQSLTRNETKDERLWKEIGEEVRKDTDKLFKMIGEAYAVLSDPAKRSQYDL 1104
Query: 1069 EEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWRE 1107
EEE N+QK+++GS+TS A NYPF SSRR WRE
Sbjct: 1105 EEEMHNSQKRRDGSSTS--GADTDNYPFH--SSRRNWRE 1139
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684104|ref|NP_568276.2| Heat shock protein DnaJ with tetratricopeptide repeat [Arabidopsis thaliana] gi|332004425|gb|AED91808.1| Heat shock protein DnaJ with tetratricopeptide repeat [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/1243 (41%), Positives = 687/1243 (55%), Gaps = 272/1243 (21%)
Query: 11 SFNTRSVSNSSKP-TRPRLHKTRKQSKSNSQNFNFPGVSVSESGTESGFNPFR------- 62
SFN+ SS ++PR K R+Q KS QN G S S G FNPF
Sbjct: 26 SFNSAPFPRSSSGLSKPRFSKVRRQVKS--QNLKPSGTSDSLPG--QSFNPFHFRGSFSG 81
Query: 63 ----AEPGMGLGAHESLEKNKGGILFGSRNGFESCDIGE---LKIEENLRKLKIDGHRGN 115
+E G G ++E G +FG + + E +++ E + +LKI
Sbjct: 82 DPTPSEIGFGRSSNE-------GFVFGGSSHVDKLQSDEKIGIRVMEEMERLKI------ 128
Query: 116 VESELENELKQKLSKLTFKDSGEKDDVKN----FVFSGSKKSSDSFAAASELP------- 164
E + K S+L +D++N F F K S++S A ELP
Sbjct: 129 -------ESEGKASRLP-------EDMQNLNSSFSFGVKKGSNNSVFATVELPTLLSNKL 174
Query: 165 ---------------------------DQMKNLNITSKGGSGYIVGESENMLSNEMGRKL 197
DQ +N N+ SK Y+ E +LS+++ RKL
Sbjct: 175 IIDSSSRSTGHVIQESMEKLNISERGTDQKQNNNVKSKVSMDYV---GEKILSDDLSRKL 231
Query: 198 KIGSVSSDSSAGQTDMGRMSSHIFVKDKQSTNLGDKKLHDLGKSVPTEVDFQAGLQGKNS 257
+GS+++D G S F ++ +KK+HD S P F
Sbjct: 232 SVGSMTTD--------GNHSGDSF-----QGSVNEKKVHDFNSSCPMNYSFV-------- 270
Query: 258 GGGEDPVDKAKDGAIPSETASSSSSFSSSGIPFQSVDNASKVPDVDRTDRMNEFSFMSKQ 317
G PS+ NA V DV T ++F+F+S Q
Sbjct: 271 ------------GTEPSQNL-----------------NARNVHDVSSTVNTSDFNFVSNQ 301
Query: 318 DGMAAPFVGFRTPNQKINLFSGAGQEVEFSAKRGSVRDTKVKKKRGKLRKPISIPLWHGQ 377
D + F+ F+TPN K+N FS Q++ F+AK+ SV T +++G ++P+ + L G+
Sbjct: 302 DSVKTGFMEFKTPNSKVNPFSSLDQKLGFNAKKDSVGATTRARRKGG-KQPVKVQLNIGR 360
Query: 378 DFVSRDSSSPEDP-EPSESYSPMDVSPYQETLADTKCSRETSVASDESFSLDNNDASTDS 436
+F +S+ P E E+YSPMD+SPY+ET + RE S D
Sbjct: 361 EFAFAESAIPNGSNEAPEAYSPMDISPYEET----EVCREFSA---------------DI 401
Query: 437 QPAAPNVAVDEELVAATERMDINDED-VEFRDTKEDHSDRGVGSEVPQDESVSGTETESF 495
P APN D ELVAATERM+IN+ D V +E ++ E +S+SG ETESF
Sbjct: 402 PPTAPNYLFDAELVAATERMEINEGDEVNNYQAEEFNTGNCADHEDLAGDSISGAETESF 461
Query: 496 KSANEEIDDATDN---SAETEASSSAGIQRQDSD-------------------------- 526
KSA EE++ +++ ++E+E +S R+++D
Sbjct: 462 KSAAEEMETSSETFATASESEVTSRYKSDRKENDDHSLSNTDAASSSFTFSASSFSGVQG 521
Query: 527 ---SRMQFSFPSHSEDIGGSNFTFAASS-----ASQASPL------LSSGQEERGDLFSS 572
+ + + + +G + ++ +SQ SPL S+G+ D +
Sbjct: 522 PLSTSKRINRKKNPIKLGQDPYILIPNATLPLKSSQHSPLTGVQSHFSTGKPSERDPLTR 581
Query: 573 RLKGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRL--------------------- 611
K NS +++ + K N AAQEACEKWRL
Sbjct: 582 LHKPINNSVMEKARIEKDVSN-------AAQEACEKWRLRGNNAYKIGDLSRAEESYTQG 634
Query: 612 ---------------------SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAAN 650
SNRAATRMALGRMR+A++DC +A +ID +FL+VQVRAAN
Sbjct: 635 IDSVPRIETSRNCLRALMLCYSNRAATRMALGRMREAIADCTMASSIDSNFLKVQVRAAN 694
Query: 651 CHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKT 710
C+L+LGEIEDAS+YF+ CLQSGSD+CVD+KI VEAS+GLQKAQ+VSECM + + LQ +T
Sbjct: 695 CYLSLGEIEDASRYFKKCLQSGSDICVDRKIIVEASEGLQKAQRVSECMHEAGRRLQLRT 754
Query: 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770
DAE AL +++++L IS+YSEKLL MK EAL ML KY+ I+LCEQT A KNSPP
Sbjct: 755 LTDAEKALEILEDSLLISTYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAGKNSPP-- 812
Query: 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES------GNGGK 824
DS ++ K ++FR+W+C L+ KS F +G+LEEAIA+LE+ E G K
Sbjct: 813 --------DSHDTPKDINFRIWQCHLMLKSSFYMGKLEEAIASLEKQEQLLSATKREGNK 864
Query: 825 MLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRA 884
LES IPLA T+RELL K+AGNEAFQ+GRH+EAVEHYTAAL+C VES PF A+CFCNRA
Sbjct: 865 TLESSIPLAATIRELLRLKAAGNEAFQSGRHTEAVEHYTAALACNVESRPFTAVCFCNRA 924
Query: 885 AAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944
AAYKAL +DAIADC+LAIALD NY KAISRRATL+EMIRDY AASD R + +LTKQ
Sbjct: 925 AAYKALGQFSDAIADCSLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERYVNILTKQ 984
Query: 945 IEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRG 1004
+E+ SG DRS +++ND+RQAR+RL+ +EE++RK+ LDMYL+LGV S S +DI++
Sbjct: 985 MEEKT-SGTLDRSTSMSNDIRQARIRLSELEEKSRKENSLDMYLVLGVVPSCSASDIRKA 1043
Query: 1005 YRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRS 1064
YRKAAL+HHPDKAGQSL R++ D+ LWKEIG EV KD +KLFKMI EAYAVLSDP+KRS
Sbjct: 1044 YRKAALKHHPDKAGQSLTRNETKDERLWKEIGEEVRKDTDKLFKMIGEAYAVLSDPAKRS 1103
Query: 1065 RYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWRE 1107
+YDLEEE N+QK+++GS+TS A NYPF SSRR WRE
Sbjct: 1104 QYDLEEEMHNSQKRRDGSSTS--GADTDNYPFH--SSRRNWRE 1142
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1166 | ||||||
| TAIR|locus:505006611 | 1165 | TPR16 "AT5G12430" [Arabidopsis | 0.445 | 0.445 | 0.599 | 7e-182 | |
| TAIR|locus:2062724 | 1108 | TPR15 "tetratricopeptide repea | 0.455 | 0.479 | 0.485 | 4.4e-135 | |
| UNIPROTKB|F1N7H0 | 499 | F1N7H0 "Uncharacterized protei | 0.235 | 0.551 | 0.271 | 1e-33 | |
| UNIPROTKB|Q99615 | 494 | DNAJC7 "DnaJ homolog subfamily | 0.121 | 0.287 | 0.303 | 4.2e-22 | |
| UNIPROTKB|F1S0P4 | 494 | DNAJC7 "Uncharacterized protei | 0.121 | 0.287 | 0.303 | 5.3e-22 | |
| UNIPROTKB|E2QWR5 | 494 | DNAJC7 "Uncharacterized protei | 0.121 | 0.287 | 0.303 | 8.4e-22 | |
| MGI|MGI:1928373 | 494 | Dnajc7 "DnaJ (Hsp40) homolog, | 0.121 | 0.287 | 0.296 | 1.1e-21 | |
| UNIPROTKB|F1NPY5 | 469 | DNAJC7 "Uncharacterized protei | 0.121 | 0.302 | 0.296 | 1.3e-21 | |
| UNIPROTKB|F1NPY6 | 486 | DNAJC7 "Uncharacterized protei | 0.121 | 0.292 | 0.296 | 1.5e-21 | |
| UNIPROTKB|Q566E2 | 438 | Dnajc7 "Dnajc7 protein" [Rattu | 0.121 | 0.324 | 0.289 | 2.5e-21 |
| TAIR|locus:505006611 TPR16 "AT5G12430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1605 (570.0 bits), Expect = 7.0e-182, Sum P(2) = 7.0e-182
Identities = 328/547 (59%), Positives = 414/547 (75%)
Query: 573 RLKGD---RNSEVDRGQEIKQEPNLASAETIAAQEACEKWRL---SNRAATRMALGRMRD 626
RL+G+ + ++ R +E + + S I C + + SNRAATRMALGRMR+
Sbjct: 612 RLRGNNAYKIGDLSRAEESYTQ-GIDSVPRIETSRNCLRALMLCYSNRAATRMALGRMRE 670
Query: 627 ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686
A++DC +A +ID +FL+VQVRAANC+L+LGEIEDAS+YF+ CLQSGSD+CVD+KI VEAS
Sbjct: 671 AIADCTMASSIDSNFLKVQVRAANCYLSLGEIEDASRYFKKCLQSGSDICVDRKIIVEAS 730
Query: 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR 746
+GLQKAQ+VSECM + + LQ +T DAE AL +++++L IS+YSEKLL MK EAL ML
Sbjct: 731 EGLQKAQRVSECMHEAGRRLQLRTLTDAEKALEILEDSLLISTYSEKLLTMKGEALLMLE 790
Query: 747 KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGR 806
KY+ I+LCEQT A KNSPP DS ++ K ++FR+W+C L+ KS F +G+
Sbjct: 791 KYDAAIKLCEQTVDLAGKNSPP----------DSHDTPKDINFRIWQCHLMLKSSFYMGK 840
Query: 807 LEEAIAALERHES------GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860
LEEAIA+LE+ E G K LES IPLA T+RELL K+AGNEAFQ+GRH+EAVE
Sbjct: 841 LEEAIASLEKQEQLLSATKREGNKTLESSIPLAATIRELLRLKAAGNEAFQSGRHTEAVE 900
Query: 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920
HYTAAL+C VES PF A+CFCNRAAAYKAL +DAIADC+LAIALD NY KAISRRATL
Sbjct: 901 HYTAALACNVESRPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKAISRRATL 960
Query: 921 YEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARK 980
+EMIRDY AASD R + +LTKQ+E+ SG DRS +++ND+RQAR+RL+ +EE++RK
Sbjct: 961 FEMIRDYGQAASDMERYVNILTKQMEEKT-SGTLDRSTSMSNDIRQARIRLSELEEKSRK 1019
Query: 981 DIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVH 1040
+ LDMYL+LGV S S +DI++ YRKAAL+HHPDKAGQSL R++ D+ LWKEIG EV
Sbjct: 1020 ENSLDMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSLTRNETKDERLWKEIGEEVR 1079
Query: 1041 KDAEKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSS 1100
KD +KLFKMI EAYAVLSDP+KRS+YDLEEE N+QK+++GS+TS A NYPF S
Sbjct: 1080 KDTDKLFKMIGEAYAVLSDPAKRSQYDLEEEMHNSQKRRDGSSTSG--ADTDNYPFH--S 1135
Query: 1101 SRRQWRE 1107
SRR WRE
Sbjct: 1136 SRRNWRE 1142
|
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| TAIR|locus:2062724 TPR15 "tetratricopeptide repeat 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1219 (434.2 bits), Expect = 4.4e-135, Sum P(4) = 4.4e-135
Identities = 272/560 (48%), Positives = 380/560 (67%)
Query: 573 RLKGD---RNSEVDRGQE-----IKQEPNLASAE-TIAAQEACEKWRLSNRAATRMALGR 623
RL+G+ +N + + +E I P+ ++E ++ C NRAA R++LGR
Sbjct: 557 RLRGNQAYKNGYMSKAEECYTHGINSSPSKDNSEYSVKPLALC----YGNRAAARISLGR 612
Query: 624 MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683
+R+A+SDC +A ++DP +++ +RAANCHL LGE+ A +YF C++S S VC+D++ +
Sbjct: 613 LREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNKCMKSTSSVCLDRRTTI 672
Query: 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALF 743
EA++GLQ+AQ+V++ ++ L+ +T + A AL I AL ISS S+KLL+MKAEALF
Sbjct: 673 EAAEGLQQAQRVADFTSCASIFLEKRTPDGASDALVPIANALSISSCSDKLLQMKAEALF 732
Query: 744 MLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT 803
M+R+Y+EVI+LCE T AE+N G + ++ ST H S +WR I KS+F
Sbjct: 733 MIRRYKEVIELCENTLQTAERNFVSAGIGGTT-NVNGLGSTYH-SLIVWRWNKISKSHFY 790
Query: 804 LGRLEEAIAALERHE------SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSE 857
LG LE+A+ LE+ + + N + ES L T+ ELL K+AGNEA + ++ E
Sbjct: 791 LGNLEKALDILEKLQQVEYTCNENQEECRESPASLVATISELLRYKNAGNEAVRDRKYME 850
Query: 858 AVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917
AVE YTAALS V+S PFAAICFCNRAAA +AL I DAIADC+LA+ALD NY KA+SRR
Sbjct: 851 AVEQYTAALSRNVDSRPFAAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRR 910
Query: 918 ATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVS-DRSINLANDLRQARMRLTAVEE 976
ATL+EMIRDYD AASD RLI++L KQ +K+ S DR+ + +L+QAR RL+ +EE
Sbjct: 911 ATLHEMIRDYDQAASDLQRLISILVKQSDKTKTPETSVDRASS-RKELKQARQRLSVMEE 969
Query: 977 EARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLW-KEI 1035
++++ I LD +LI+GV++S S ADIK+ YRKAALRHHPDKA Q LVRS++ +G W KEI
Sbjct: 970 KSKEGIHLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQILVRSES--EGPWLKEI 1027
Query: 1036 GAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYP 1095
EVHK A++LFKMI EAY+VLSDP+KRS Y+LEEE R + + S SR A A + P
Sbjct: 1028 LEEVHKGADRLFKMIGEAYSVLSDPTKRSDYELEEEIRKARASRE-SYRSRKAAEASSPP 1086
Query: 1096 FERSSSRRQWREVRRSYDNS 1115
++ +SRR W++ R+ N+
Sbjct: 1087 YQ--TSRRYWKDSWRTNQNT 1104
|
|
| UNIPROTKB|F1N7H0 F1N7H0 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 1.0e-33, Sum P(3) = 1.0e-33
Identities = 80/295 (27%), Positives = 129/295 (43%)
Query: 693 QKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEAL-FML-RKYEE 750
Q+ E ++AQ Q + +A I I E F K+ A A+ F L + ++
Sbjct: 120 QRALELDHKNAQAQQEFKNANAVIEYEKIAETDFEKRDFRKVNYNLALAISFPLSERMKK 179
Query: 751 VIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGR---L 807
+ +C HF E+ PP GQS+ +S TK+ S+ C L SY + +
Sbjct: 180 IRAVCVCNLHFVEE-WPP----GQSV---TSSMTKNESYD---CFLYLLSYLCMHLFLWV 228
Query: 808 EEAIAALERHESGNGGKMLES-LIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAAL 866
+ A H K ++ L + L +K GN+AF+ G + A E YT AL
Sbjct: 229 RKLSTASSSHVLRIPPKKKKACLSECLKNAKALKAKKEDGNKAFKEGNYKLAYELYTEAL 288
Query: 867 SCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926
+ A +CNR LR + DAI DC A+ LD Y+KA RRA Y
Sbjct: 289 GIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYLDTEQ 348
Query: 927 YDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKD 981
Y+ A D+ ++ T++ ++ Q + + + L R+ ++ V++ A +D
Sbjct: 349 YEEAVRDYEKVYQ--TEKTKEHKQL-LKNAQLELKKSKRKDYYKILGVDKNASED 400
|
|
| UNIPROTKB|Q99615 DNAJC7 "DnaJ homolog subfamily C member 7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 44/145 (30%), Positives = 71/145 (48%)
Query: 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896
+ L +K GN+AF+ G + A E YT AL + A +CNR LR + DA
Sbjct: 254 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDA 313
Query: 897 IADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDR 956
I DC A+ LD Y+KA RRA Y Y+ A D+ ++ T++ ++ Q + +
Sbjct: 314 IEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ--TEKTKEHKQL-LKNA 370
Query: 957 SINLANDLRQARMRLTAVEEEARKD 981
+ L R+ ++ V++ A +D
Sbjct: 371 QLELKKSKRKDYYKILGVDKNASED 395
|
|
| UNIPROTKB|F1S0P4 DNAJC7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 44/145 (30%), Positives = 71/145 (48%)
Query: 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896
+ L +K GN+AF+ G + A E YT AL + A +CNR LR + DA
Sbjct: 254 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDA 313
Query: 897 IADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDR 956
I DC A+ LD Y+KA RRA Y Y+ A D+ ++ T++ ++ Q + +
Sbjct: 314 IEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ--TEKTKEHKQL-LKNA 370
Query: 957 SINLANDLRQARMRLTAVEEEARKD 981
+ L R+ ++ V++ A +D
Sbjct: 371 QLELKKSKRKDYYKILGVDKNASED 395
|
|
| UNIPROTKB|E2QWR5 DNAJC7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 44/145 (30%), Positives = 71/145 (48%)
Query: 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896
+ L +K GN+AF+ G + A E YT AL + A +CNR LR + DA
Sbjct: 254 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDA 313
Query: 897 IADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDR 956
I DC A+ LD Y+KA RRA Y Y+ A D+ ++ T++ ++ Q + +
Sbjct: 314 IEDCTSAVKLDATYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ--TEKTKEHKQL-LKNA 370
Query: 957 SINLANDLRQARMRLTAVEEEARKD 981
+ L R+ ++ V++ A +D
Sbjct: 371 QLELKKSKRKDYYKILGVDKNASED 395
|
|
| MGI|MGI:1928373 Dnajc7 "DnaJ (Hsp40) homolog, subfamily C, member 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 43/145 (29%), Positives = 71/145 (48%)
Query: 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896
+ L +K GN+AF+ G + A E YT AL + A +CNR LR + DA
Sbjct: 254 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRQLEDA 313
Query: 897 IADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDR 956
I DC A+ LD Y+KA RRA Y ++ A D+ ++ T++ ++ Q + +
Sbjct: 314 IEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYEKVYQ--TEKTKEHKQL-LKNA 370
Query: 957 SINLANDLRQARMRLTAVEEEARKD 981
+ L R+ ++ V++ A +D
Sbjct: 371 QLELKKSKRKDYYKILGVDKNASED 395
|
|
| UNIPROTKB|F1NPY5 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 175 (66.7 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 43/145 (29%), Positives = 71/145 (48%)
Query: 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896
+ L +K GN+AF+ G + A E YT AL + A +CNR LR + +A
Sbjct: 229 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEEA 288
Query: 897 IADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDR 956
I DC A+ LD Y+KA RRA Y Y+ A D+ ++ T++ ++ Q + +
Sbjct: 289 IDDCTNAVKLDETYIKAYLRRAQCYMDTEQYEDAVRDYEKVYQ--TEKTKEHKQL-LKNA 345
Query: 957 SINLANDLRQARMRLTAVEEEARKD 981
+ L R+ ++ V++ A +D
Sbjct: 346 QMELKKSKRKDYYKILGVDKNASED 370
|
|
| UNIPROTKB|F1NPY6 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 175 (66.7 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 43/145 (29%), Positives = 71/145 (48%)
Query: 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896
+ L +K GN+AF+ G + A E YT AL + A +CNR LR + +A
Sbjct: 246 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEEA 305
Query: 897 IADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDR 956
I DC A+ LD Y+KA RRA Y Y+ A D+ ++ T++ ++ Q + +
Sbjct: 306 IDDCTNAVKLDETYIKAYLRRAQCYMDTEQYEDAVRDYEKVYQ--TEKTKEHKQL-LKNA 362
Query: 957 SINLANDLRQARMRLTAVEEEARKD 981
+ L R+ ++ V++ A +D
Sbjct: 363 QMELKKSKRKDYYKILGVDKNASED 387
|
|
| UNIPROTKB|Q566E2 Dnajc7 "Dnajc7 protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 175 (66.7 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 42/145 (28%), Positives = 71/145 (48%)
Query: 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896
+ L +K GN+AF+ G + A E YT AL + A +CNR L+ + DA
Sbjct: 198 KALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLKKLEDA 257
Query: 897 IADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDR 956
I DC A+ LD Y+KA RRA Y ++ A D+ ++ T++ ++ Q + +
Sbjct: 258 IEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKVYQ--TEKTKEHKQL-LKNA 314
Query: 957 SINLANDLRQARMRLTAVEEEARKD 981
+ L R+ ++ V++ A +D
Sbjct: 315 QLELKKSKRKDYYKILGVDKNASED 339
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00022224001 | SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (1161 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1166 | |||
| pfam00226 | 63 | pfam00226, DnaJ, DnaJ domain | 2e-18 | |
| PRK10767 | 371 | PRK10767, PRK10767, chaperone protein DnaJ; Provis | 1e-16 | |
| TIGR02349 | 354 | TIGR02349, DnaJ_bact, chaperone protein DnaJ | 3e-16 | |
| COG0484 | 371 | COG0484, DnaJ, DnaJ-class molecular chaperone with | 5e-16 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-15 | |
| smart00271 | 60 | smart00271, DnaJ, DnaJ molecular chaperone homolog | 2e-14 | |
| PRK14294 | 366 | PRK14294, PRK14294, chaperone protein DnaJ; Provis | 8e-14 | |
| PRK14289 | 386 | PRK14289, PRK14289, chaperone protein DnaJ; Provis | 1e-13 | |
| cd06257 | 55 | cd06257, DnaJ, DnaJ domain or J-domain | 5e-13 | |
| PRK14298 | 377 | PRK14298, PRK14298, chaperone protein DnaJ; Provis | 6e-13 | |
| PRK14297 | 380 | PRK14297, PRK14297, chaperone protein DnaJ; Provis | 2e-12 | |
| PRK14301 | 373 | PRK14301, PRK14301, chaperone protein DnaJ; Provis | 3e-12 | |
| PRK14281 | 397 | PRK14281, PRK14281, chaperone protein DnaJ; Provis | 6e-12 | |
| PRK14277 | 386 | PRK14277, PRK14277, chaperone protein DnaJ; Provis | 7e-12 | |
| PRK14279 | 392 | PRK14279, PRK14279, chaperone protein DnaJ; Provis | 9e-12 | |
| PRK14293 | 374 | PRK14293, PRK14293, chaperone protein DnaJ; Provis | 2e-11 | |
| PRK14292 | 371 | PRK14292, PRK14292, chaperone protein DnaJ; Provis | 3e-11 | |
| PRK14284 | 391 | PRK14284, PRK14284, chaperone protein DnaJ; Provis | 3e-11 | |
| PRK14280 | 376 | PRK14280, PRK14280, chaperone protein DnaJ; Provis | 8e-11 | |
| PRK14283 | 378 | PRK14283, PRK14283, chaperone protein DnaJ; Provis | 1e-10 | |
| PRK14276 | 380 | PRK14276, PRK14276, chaperone protein DnaJ; Provis | 2e-10 | |
| PRK10266 | 306 | PRK10266, PRK10266, curved DNA-binding protein Cbp | 2e-10 | |
| COG2214 | 237 | COG2214, CbpA, DnaJ-class molecular chaperone [Pos | 8e-10 | |
| PRK14295 | 389 | PRK14295, PRK14295, chaperone protein DnaJ; Provis | 1e-09 | |
| PRK14290 | 365 | PRK14290, PRK14290, chaperone protein DnaJ; Provis | 1e-09 | |
| PRK14291 | 382 | PRK14291, PRK14291, chaperone protein DnaJ; Provis | 1e-09 | |
| PRK14278 | 378 | PRK14278, PRK14278, chaperone protein DnaJ; Provis | 1e-09 | |
| PTZ00037 | 421 | PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov | 2e-09 | |
| PRK14299 | 291 | PRK14299, PRK14299, chaperone protein DnaJ; Provis | 3e-09 | |
| PRK14282 | 369 | PRK14282, PRK14282, chaperone protein DnaJ; Provis | 6e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-09 | |
| PRK14300 | 372 | PRK14300, PRK14300, chaperone protein DnaJ; Provis | 7e-09 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 9e-09 | |
| PRK14287 | 371 | PRK14287, PRK14287, chaperone protein DnaJ; Provis | 3e-08 | |
| PRK14285 | 365 | PRK14285, PRK14285, chaperone protein DnaJ; Provis | 4e-08 | |
| PRK14288 | 369 | PRK14288, PRK14288, chaperone protein DnaJ; Provis | 1e-07 | |
| PRK14286 | 372 | PRK14286, PRK14286, chaperone protein DnaJ; Provis | 1e-07 | |
| TIGR03835 | 871 | TIGR03835, termin_org_DnaJ, terminal organelle ass | 1e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-06 | |
| PRK09430 | 267 | PRK09430, djlA, Dna-J like membrane chaperone prot | 1e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-05 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 6e-05 | |
| COG5407 | 610 | COG5407, SEC63, Preprotein translocase subunit Sec | 9e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 1e-04 | |
| PRK14296 | 372 | PRK14296, PRK14296, chaperone protein DnaJ; Provis | 1e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-04 | |
| TIGR02552 | 135 | TIGR02552, LcrH_SycD, type III secretion low calci | 8e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.001 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.002 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.003 | |
| COG1076 | 174 | COG1076, DjlA, DnaJ-domain-containing proteins 1 [ | 0.003 |
| >gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-18
Identities = 37/83 (44%), Positives = 43/83 (51%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV S +IK+ YRK AL++HPDK N D AE
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDK---------NPGDP-----------AAE 40
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I EAY VLSDP KR+ YD
Sbjct: 41 EKFKEINEAYEVLSDPEKRAIYD 63
|
DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63 |
| >gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-16
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LGV + S +IK+ YRK A+++HPD+ N D K+AE
Sbjct: 5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDR---------NPGD-----------KEAE 44
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I EAY VLSDP KR+ YD
Sbjct: 45 EKFKEIKEAYEVLSDPQKRAAYD 67
|
Length = 371 |
| >gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-16
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV S +IK+ YRK A ++HPD R+ + K+AE
Sbjct: 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPD-------RNKD--------------KEAE 39
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I EAY VLSDP KR++YD
Sbjct: 40 EKFKEINEAYEVLSDPEKRAQYD 62
|
This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354 |
| >gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 5e-16
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 20/84 (23%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV S +IK+ YRK A ++HPD+ N D K+AE
Sbjct: 5 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDR---------NPGD-----------KEAE 44
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYDL 1068
+ FK I EAY VLSDP KR+ YD
Sbjct: 45 EKFKEINEAYEVLSDPEKRAAYDQ 68
|
Length = 371 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 4e-15
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
GN ++ G + EA+E+Y AL E P A + N AAAY L +A+ D A+
Sbjct: 7 GNLYYKLGDYDEALEYYEKAL----ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
LD + KA Y + Y+ A + + + L
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-14
Identities = 34/78 (43%), Positives = 42/78 (53%), Gaps = 19/78 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV S+ +IK+ YRK AL++HPDK N D ++AE
Sbjct: 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDK---------NPGD----------KEEAE 42
Query: 1045 KLFKMIAEAYAVLSDPSK 1062
+ FK I EAY VLSDP K
Sbjct: 43 EKFKEINEAYEVLSDPEK 60
|
Length = 60 |
| >gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 8e-14
Identities = 37/83 (44%), Positives = 46/83 (55%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV S +IK+ YRK A+++HPD+ + GD K+AE
Sbjct: 5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDR--------NPGD------------KEAE 44
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+LFK AEAY VLSDP KR YD
Sbjct: 45 ELFKEAAEAYEVLSDPKKRGIYD 67
|
Length = 366 |
| >gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LGV + +V +IK+ YRK A+++HPDK + GD K+AE
Sbjct: 6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDK--------NPGD------------KEAE 45
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK AEAY VLSDP KRSRYD
Sbjct: 46 EKFKEAAEAYDVLSDPDKRSRYD 68
|
Length = 386 |
| >gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 5e-13
Identities = 33/75 (44%), Positives = 39/75 (52%), Gaps = 20/75 (26%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV S +IK+ YRK AL++HPDK N DD +AE
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDK---------NPDD-----------PEAE 40
Query: 1045 KLFKMIAEAYAVLSD 1059
+ FK I EAY VLSD
Sbjct: 41 EKFKEINEAYEVLSD 55
|
DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55 |
| >gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 6e-13
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILG+ SV DIK+ YRK A+++HPDK + DAE
Sbjct: 6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP---------------------DAE 44
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I+EAYAVLSD KR++YD
Sbjct: 45 EKFKEISEAYAVLSDAEKRAQYD 67
|
Length = 377 |
| >gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LG+E S +IK+ +RK A+++HPDK + G+ K+AE
Sbjct: 5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDK--------NKGN------------KEAE 44
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I EAY VLSDP K+++YD
Sbjct: 45 EKFKEINEAYQVLSDPQKKAQYD 67
|
Length = 380 |
| >gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-12
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 20/85 (23%)
Query: 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKD 1042
D Y +LGV S +IK+ YRK AL++HPD+ N D+ +
Sbjct: 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDR---------NPDN-----------PE 42
Query: 1043 AEKLFKMIAEAYAVLSDPSKRSRYD 1067
AE+ FK AEAY VL D KR+RYD
Sbjct: 43 AEQKFKEAAEAYEVLRDAEKRARYD 67
|
Length = 373 |
| >gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 6e-12
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LGV S +IK+ YRK AL++HPDK N D+ K+AE
Sbjct: 4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDK---------NPDN-----------KEAE 43
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK + EAY VLS+ KR RYD
Sbjct: 44 EHFKEVNEAYEVLSNDDKRRRYD 66
|
Length = 397 |
| >gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 7e-12
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV+ + + +IK+ YR+ A ++HPD + GD K+AE
Sbjct: 6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPD--------LNPGD------------KEAE 45
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I EAY +LSDP KR++YD
Sbjct: 46 QKFKEINEAYEILSDPQKRAQYD 68
|
Length = 386 |
| >gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 9e-12
Identities = 36/89 (40%), Positives = 43/89 (48%), Gaps = 23/89 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y LGV S S +IK+ YRK A HPD N D AE
Sbjct: 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDA---------NPGD-----------PAAE 49
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYDLEEETR 1073
+ FK ++EA+ VLSDP+KR YD ETR
Sbjct: 50 ERFKAVSEAHDVLSDPAKRKEYD---ETR 75
|
Length = 392 |
| >gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-11
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 982 IPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHK 1041
+ D Y ILGV ++KR YR+ A ++HPD + KE GAE
Sbjct: 1 MAADYYEILGVSRDADKDELKRAYRRLARKYHPD---------------VNKEPGAE--- 42
Query: 1042 DAEKLFKMIAEAYAVLSDPSKRSRYD 1067
++ FK I AY VLSDP R+RYD
Sbjct: 43 --DR-FKEINRAYEVLSDPETRARYD 65
|
Length = 374 |
| >gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 3e-11
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 21/84 (25%)
Query: 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDA 1043
+D Y +LGV + S +IK YRK AL++HPD+ N + G A
Sbjct: 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDR---------NKEKG------------A 40
Query: 1044 EKLFKMIAEAYAVLSDPSKRSRYD 1067
+ F I EAYAVLSD KR+ YD
Sbjct: 41 AEKFAQINEAYAVLSDAEKRAHYD 64
|
Length = 371 |
| >gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 20/84 (23%)
Query: 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDA 1043
+D Y ILGV + S +IK+ YRK A+++HPDK + GD +A
Sbjct: 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDK--------NPGD------------AEA 40
Query: 1044 EKLFKMIAEAYAVLSDPSKRSRYD 1067
EK FK ++EAY VLSD KR YD
Sbjct: 41 EKRFKEVSEAYEVLSDAQKRESYD 64
|
Length = 391 |
| >gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 8e-11
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LGV S S +IK+ YRK + ++HPD + KE GA E
Sbjct: 5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPD---------------INKEEGA-----DE 44
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
K FK I+EAY VLSD KR++YD
Sbjct: 45 K-FKEISEAYEVLSDDQKRAQYD 66
|
Length = 376 |
| >gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LGV+ + +IK+ YRK A ++HPD + + + AE
Sbjct: 6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---------------------EGAE 44
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I+EAYAVLSD KR RYD
Sbjct: 45 EKFKEISEAYAVLSDDEKRQRYD 67
|
Length = 378 |
| >gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
+ Y LGV S +IK+ YRK + ++HPD + KE GAE E
Sbjct: 5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPD---------------INKEPGAE-----E 44
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
K +K + EAY LSDP KR+ YD
Sbjct: 45 K-YKEVQEAYETLSDPQKRAAYD 66
|
Length = 380 |
| >gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y I+GV+ + + IK YR+ A ++HPD + + DAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP---------------------DAE 43
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYDLEEETRN-----TQKKQNGSNTSRTHAYAQNYP--FE 1097
FK +AEA+ VLSD +R+ YD + RN Q + + + + F
Sbjct: 44 ARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIFG 103
Query: 1098 RSSSRRQWREVRRSYD 1113
+ + + + R R +D
Sbjct: 104 QHARQSRQRPAARGHD 119
|
Length = 306 |
| >gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.2 bits (145), Expect = 8e-10
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 23/144 (15%)
Query: 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDA 1043
LD Y ILGV + S+ +IK+ YRK AL++HPD+ N D K A
Sbjct: 6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDR---------NPGD----------PKVA 46
Query: 1044 EKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRR 1103
E+ FK I EAY +LSDP +R+ YD G + + A+ + +
Sbjct: 47 EEKFKEINEAYEILSDPERRAEYDKIGA----DNYFPGKSYRESAAFPIEGSLQLTGLYE 102
Query: 1104 QWREVRRSYDNSAARGDIYSISFN 1127
+WR R + A+ D+ S +
Sbjct: 103 EWRGKRNKTERKASLADLLSRGLS 126
|
Length = 237 |
| >gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LGV + A+IK+ YRK A +HPD ++ GD AE
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPD--------ANKGDAK------------AE 49
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I+EAY VLSD KR YD
Sbjct: 50 ERFKEISEAYDVLSDEKKRKEYD 72
|
Length = 389 |
| >gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 1e-09
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 22/99 (22%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV+ + S DIK+ +R+ A + HPD + N +AE
Sbjct: 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPD------LHPGN-------------KAEAE 44
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSN 1083
+ FK I+EAY VLSDP KR +YD +T GSN
Sbjct: 45 EKFKEISEAYEVLSDPQKRRQYD---QTGTVDFGAGGSN 80
|
Length = 365 |
| >gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV + + +IK+ YR+ A ++HPD K +AE
Sbjct: 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPD---------------FNKN------PEAE 42
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I EAY VLSDP KR YD
Sbjct: 43 EKFKEINEAYQVLSDPEKRKLYD 65
|
Length = 382 |
| >gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 34/84 (40%), Positives = 41/84 (48%), Gaps = 21/84 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LGV + S A+IKR YRK A HPD N D+ A+
Sbjct: 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDV---------NPDEE------------AQ 42
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYDL 1068
+ FK I+ AY VLSDP KR DL
Sbjct: 43 EKFKEISVAYEVLSDPEKRRIVDL 66
|
Length = 378 |
| >gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 24/82 (29%)
Query: 986 MYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEK 1045
+Y +L + + ++IK+ YRK A++HHPDK G D EK
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-----------------------DPEK 66
Query: 1046 LFKMIAEAYAVLSDPSKRSRYD 1067
FK I+ AY VLSDP KR YD
Sbjct: 67 -FKEISRAYEVLSDPEKRKIYD 87
|
Length = 421 |
| >gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 25/85 (29%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKD-- 1042
D Y ILGV + S +IK+ ++K A ++HPD V+K
Sbjct: 5 DYYAILGVPKNASQDEIKKAFKKLARKYHPD-----------------------VNKSPG 41
Query: 1043 AEKLFKMIAEAYAVLSDPSKRSRYD 1067
AE+ FK I EAY VLSDP KR YD
Sbjct: 42 AEEKFKEINEAYTVLSDPEKRRIYD 66
|
Length = 291 |
| >gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-09
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 19/83 (22%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV + + +IKR Y++ HPD+ E K+AE
Sbjct: 5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDR-------------------HPENRKEAE 45
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I EAY VLSDP KR+ YD
Sbjct: 46 QKFKEIQEAYEVLSDPQKRAMYD 68
|
Length = 369 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 7e-09
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL-RHITD 895
K+ GN F+ G + EA+E Y AL E P A + N A AY L + +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKAL----ELDPDNAEAYYNLALAYLKLGKDYEE 56
Query: 896 AIADCNLAIALD 907
A+ D A+ LD
Sbjct: 57 ALEDLEKALELD 68
|
Length = 69 |
| >gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 7e-09
Identities = 38/107 (35%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV + S AD+K+ Y K A ++HPD KDAE
Sbjct: 4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA---------------------KDAE 42
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYDL--EEETRNTQKKQNGSNTSRTHA 1089
K FK I AY VL D KR+ YD + +N Q + G N H
Sbjct: 43 KKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGGNHGGFHP 89
|
Length = 372 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 9e-09
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN+A++ ++A++ Y+ A+ C + + + NRAA + AL + D
Sbjct: 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDP-----VYYSNRAACHNALGDWEKVVEDTTA 185
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDF 934
A+ LD +Y KA++RRA Y+ + Y A D
Sbjct: 186 ALELDPDYSKALNRRANAYDGLGKYADALLDL 217
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 3e-08
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LGV+ + SV ++K+ YRK A ++HPD DAE
Sbjct: 5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPD---------------------VNKAPDAE 43
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
FK + EAY LSDP K++ YD
Sbjct: 44 DKFKEVKEAYDTLSDPQKKAHYD 66
|
Length = 371 |
| >gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 4e-08
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILG+ S +IK+ YRK A+++HPDK N + K+AE
Sbjct: 4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDK---------NKGN-----------KEAE 43
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+FK EAY VL D +KR++YD
Sbjct: 44 SIFKEATEAYEVLIDDNKRAQYD 66
|
Length = 365 |
| >gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 1e-07
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 25/104 (24%)
Query: 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDA 1043
L Y IL VE + IK+ YRK AL++HPD+ + GD K+A
Sbjct: 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDR--------NAGD------------KEA 42
Query: 1044 EKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRT 1087
E+ FK+I EAY VLSD KR+ YD R +K N + S++
Sbjct: 43 EEKFKLINEAYGVLSDEKKRALYD-----RYGKKGLNQAGASQS 81
|
Length = 369 |
| >gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 20/81 (24%)
Query: 987 YLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKL 1046
Y ILGV S + +IK YRK A+++HPDK + G+ K++E+
Sbjct: 7 YDILGVSKSANDEEIKSAYRKLAIKYHPDK--------NKGN------------KESEEK 46
Query: 1047 FKMIAEAYAVLSDPSKRSRYD 1067
FK EAY +L DP KR YD
Sbjct: 47 FKEATEAYEILRDPKKRQAYD 67
|
Length = 372 |
| >gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
Score = 52.9 bits (126), Expect = 1e-06
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LG++ +IK+ +RK A ++HPD+ N DA
Sbjct: 3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDR---------NKA------------PDAA 41
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+F I EA VLS+P KR+ YD
Sbjct: 42 SIFAEINEANDVLSNPKKRANYD 64
|
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY-EMIRDYDHAASDFH 935
A N A L +AI A+ LD + +A A Y ++ +DY+ A D
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 936 RLIAL 940
+ + L
Sbjct: 63 KALEL 67
|
Length = 69 |
| >gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDK 1016
D Y +LGV S +IKR YRK HHPDK
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
|
Length = 267 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
N AA LG+ +AL D A+ +DPD + + LG+ E+A + + L+
Sbjct: 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (112), Expect = 2e-05
Identities = 52/304 (17%), Positives = 101/304 (33%), Gaps = 23/304 (7%)
Query: 712 NDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771
+ +++ + + + LLE L +L + E ++L E+ +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 772 NG------QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKM 825
+ L+ + + L + ++ LG L EA+ E ++
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL-----EL 117
Query: 826 LESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAA 885
LE + L + G ++ G + EA+E Y AL A A
Sbjct: 118 LEKALALDPDPDLAEALLALG-ALYELGDYEEALELYEKALELD-PELNELAEALLALGA 175
Query: 886 AYKALRHITDAIADCNLAIALDGN-YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944
+AL +A+ A+ L+ + +A+ LY + Y+ A + + + L
Sbjct: 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235
Query: 945 IEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRG 1004
E NLA L + A+E + LG+ + +A+
Sbjct: 236 AEALY---------NLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALEL 286
Query: 1005 YRKA 1008
KA
Sbjct: 287 LEKA 290
|
Length = 291 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
EAF + AV+ YT A ++ P A + +RA A L + T+A+AD N AI
Sbjct: 9 AKEAFVDDDFALAVDLYTQA----IDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE 64
Query: 906 LDGNYLKAISRRATLYEMIRDYDHA 930
LD + KA R+ T + +Y A
Sbjct: 65 LDPSLAKAYLRKGTACMKLEEYQTA 89
|
Length = 356 |
| >gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 9e-05
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILG++ S DIK+ YR +++ HPDKA + E+ + E
Sbjct: 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKA---------------PPMVNELRSEYE 143
Query: 1045 KLFKMIAEAYAVLSDPSKRSRY 1066
+ +K I +AY +L+D +R Y
Sbjct: 144 EKYKTITKAYGLLTDKKRRENY 165
|
Length = 610 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
L N LG +AL A+ +DPD A + LG+ E+A + + L+
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
|
Length = 100 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 75/343 (21%), Positives = 119/343 (34%), Gaps = 66/343 (19%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
SNRAA ALG + D A+ +DPD+ + R AN + LG+ DA +
Sbjct: 164 SNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADA--LLDLTASC 221
Query: 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS 731
D +++ A L+K ++ ++L+ K N + F+ +Y
Sbjct: 222 IIDGFRNEQSAQAVERLLKK-----FAESKAKEILETKPEN--------LPSVTFVGNY- 267
Query: 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQS-MELDSSESTKHVSFR 790
L + + E+ +L E+T NGQ + L S ES S+
Sbjct: 268 --LQSFRPKPRP--AGLEDSNELDEET------------GNGQLQLGLKSPESKADESYE 311
Query: 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850
F+ LG+L E A G
Sbjct: 312 --EAARAFEKALDLGKLGEKEAIALNLR---------------------------GTFKC 342
Query: 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
G+H EA+ LS ++E P + RA+ L A D + A+ L+
Sbjct: 343 LKGKHLEALAD----LSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398
Query: 911 LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGV 953
RA L+ + ++ A D+ + I L I Q GV
Sbjct: 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LGV + S +I++ YRK A ++HPD DA
Sbjct: 5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP---------------------DAH 43
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
I EA VL D KR +YD
Sbjct: 44 DKMVEINEAADVLLDKDKRKQYD 66
|
Length = 372 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 879 CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLI 938
N Y L +A+ A+ LD + A A Y + Y+ A D+ + +
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 939 AL 940
L
Sbjct: 62 EL 63
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE-IEDASKYFRMCL 669
L N LG +A+ A+ +DPD A +L LG+ E+A + L
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 670 Q 670
+
Sbjct: 66 E 66
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 8e-04
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 18/116 (15%)
Query: 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853
+ Y+ LG +EA+ E+ + L + ++ G
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEK------------ALELDPDNADAYYNL--AAAYYKLG 48
Query: 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN 909
++ EA+E Y AL ++ A + N AY L +A+ A+ LD N
Sbjct: 49 KYEEALEDYEKALELDPDN----AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
AA L +A+ LA A+DPD R AA C LALGE E A K + ++
Sbjct: 58 AACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIE 113
|
Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (97), Expect = 0.001
Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAA-NCHLALGEIEDASKYFRMCL 669
L N ALG+ +AL A+A+DPD + A LG+ E+A + + L
Sbjct: 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157
Query: 670 QSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS- 728
+ D ++ A L + E AL ++++AL ++
Sbjct: 158 EL------DPELNELAEALLALGALLEA-------------LGRYEEALELLEKALKLNP 198
Query: 729 SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765
+ L L KYEE ++ E+ N
Sbjct: 199 DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIAL-------DGNYLKAISRRATLYEMIR 925
HP A N A + L +A+ A+ L +A++ A LY +
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 926 DYDHAASDFHRLIALLTK 943
DYD A + +AL
Sbjct: 61 DYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAI-------DPDFLRVQVRAANCHLALGEIEDASK 663
L+N A LG +AL A+ + P+ R A +LALG+ ++A +
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67
Query: 664 YFRMCLQ 670
Y L
Sbjct: 68 YLEKALA 74
|
Length = 78 |
| >gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 33/139 (23%), Positives = 45/139 (32%), Gaps = 21/139 (15%)
Query: 882 NRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941
AY R + A+ KA+ + A + Y R LL
Sbjct: 26 ELQRAYHPDRFGKASEAE----------QRKALQQSAEVNP---AYQTLKDPLLRAEYLL 72
Query: 942 TKQ---IEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSV 998
+ + D A L Q+ +R E + D D +LGVE
Sbjct: 73 ALADGLDHAKERQTLRDI----AFLLEQSELREELEEAREQLD-REDALKVLGVEIKADQ 127
Query: 999 ADIKRGYRKAALRHHPDKA 1017
IK+ YRK HPDKA
Sbjct: 128 DAIKKAYRKLLSEQHPDKA 146
|
Length = 174 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1166 | |||
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 100.0 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.97 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.95 | |
| COG0484 | 371 | DnaJ DnaJ-class molecular chaperone with C-termina | 99.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| PRK14296 | 372 | chaperone protein DnaJ; Provisional | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.82 | |
| PRK14288 | 369 | chaperone protein DnaJ; Provisional | 99.82 | |
| PRK14286 | 372 | chaperone protein DnaJ; Provisional | 99.81 | |
| PRK14277 | 386 | chaperone protein DnaJ; Provisional | 99.81 | |
| PRK14285 | 365 | chaperone protein DnaJ; Provisional | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| PRK14279 | 392 | chaperone protein DnaJ; Provisional | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| PRK14282 | 369 | chaperone protein DnaJ; Provisional | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| PRK14276 | 380 | chaperone protein DnaJ; Provisional | 99.79 | |
| PRK14287 | 371 | chaperone protein DnaJ; Provisional | 99.79 | |
| KOG0712 | 337 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.79 | |
| PRK14297 | 380 | chaperone protein DnaJ; Provisional | 99.79 | |
| PRK14284 | 391 | chaperone protein DnaJ; Provisional | 99.79 | |
| PTZ00037 | 421 | DnaJ_C chaperone protein; Provisional | 99.79 | |
| PRK14278 | 378 | chaperone protein DnaJ; Provisional | 99.78 | |
| PRK14280 | 376 | chaperone protein DnaJ; Provisional | 99.78 | |
| PRK14298 | 377 | chaperone protein DnaJ; Provisional | 99.78 | |
| PRK14301 | 373 | chaperone protein DnaJ; Provisional | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.78 | |
| PRK14295 | 389 | chaperone protein DnaJ; Provisional | 99.77 | |
| PRK14291 | 382 | chaperone protein DnaJ; Provisional | 99.77 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.77 | |
| PRK10767 | 371 | chaperone protein DnaJ; Provisional | 99.76 | |
| PRK14294 | 366 | chaperone protein DnaJ; Provisional | 99.76 | |
| PRK14281 | 397 | chaperone protein DnaJ; Provisional | 99.75 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.75 | |
| PRK14283 | 378 | chaperone protein DnaJ; Provisional | 99.75 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.75 | |
| TIGR02349 | 354 | DnaJ_bact chaperone protein DnaJ. This model repre | 99.74 | |
| PRK14300 | 372 | chaperone protein DnaJ; Provisional | 99.74 | |
| PRK14289 | 386 | chaperone protein DnaJ; Provisional | 99.74 | |
| PRK14290 | 365 | chaperone protein DnaJ; Provisional | 99.73 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| KOG0713 | 336 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.71 | |
| PRK14292 | 371 | chaperone protein DnaJ; Provisional | 99.71 | |
| PRK14293 | 374 | chaperone protein DnaJ; Provisional | 99.7 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.7 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.7 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.68 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.68 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.67 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.64 | |
| PRK14299 | 291 | chaperone protein DnaJ; Provisional | 99.63 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG0715 | 288 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.6 | |
| PRK10266 | 306 | curved DNA-binding protein CbpA; Provisional | 99.59 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.59 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.57 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.55 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.53 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.51 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.51 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.5 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.49 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.43 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.43 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.42 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.42 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.41 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.37 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.37 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.37 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| KOG0716 | 279 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.35 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.31 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.31 | |
| KOG0718 | 546 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.31 | |
| KOG0717 | 508 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.3 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.29 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.27 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.27 | |
| KOG0691 | 296 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.23 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.23 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.23 | |
| PF00226 | 64 | DnaJ: DnaJ domain; InterPro: IPR001623 The prokary | 99.23 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.22 | |
| PTZ00341 | 1136 | Ring-infected erythrocyte surface antigen; Provisi | 99.2 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.19 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.19 | |
| KOG0719 | 264 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.17 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.17 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.15 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.13 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.12 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.11 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.08 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.07 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.06 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.03 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.02 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.02 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| smart00271 | 60 | DnaJ DnaJ molecular chaperone homology domain. | 98.99 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.98 | |
| PHA03102 | 153 | Small T antigen; Reviewed | 98.97 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.97 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.95 | |
| TIGR03835 | 871 | termin_org_DnaJ terminal organelle assembly protei | 98.93 | |
| cd06257 | 55 | DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho | 98.93 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.92 | |
| PRK05014 | 171 | hscB co-chaperone HscB; Provisional | 98.91 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.9 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| COG2214 | 237 | CbpA DnaJ-class molecular chaperone [Posttranslati | 98.88 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.87 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| PRK01356 | 166 | hscB co-chaperone HscB; Provisional | 98.86 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.83 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.82 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.82 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.82 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.81 | |
| KOG0720 | 490 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.81 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.8 | |
| KOG0721 | 230 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.8 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.77 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.77 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.76 | |
| PRK03578 | 176 | hscB co-chaperone HscB; Provisional | 98.76 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.75 | |
| PRK00294 | 173 | hscB co-chaperone HscB; Provisional | 98.75 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.73 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.73 | |
| KOG0722 | 329 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.72 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.72 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.71 | |
| KOG0714 | 306 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.69 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.68 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.68 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.67 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.66 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 98.66 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.65 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.65 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.63 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.61 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.6 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.6 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.59 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.57 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.56 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.55 | |
| PRK09430 | 267 | djlA Dna-J like membrane chaperone protein; Provis | 98.53 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.53 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.52 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.52 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.51 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.51 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.49 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.47 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.46 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.46 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.45 | |
| PTZ00100 | 116 | DnaJ chaperone protein; Provisional | 98.44 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.44 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.44 | |
| PHA02624 | 647 | large T antigen; Provisional | 98.43 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.4 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.39 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.39 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.37 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.35 | |
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 98.35 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.3 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.28 | |
| TIGR00714 | 157 | hscB Fe-S protein assembly co-chaperone HscB. This | 98.26 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.25 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.24 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.21 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.21 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.18 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.17 | |
| PRK01773 | 173 | hscB co-chaperone HscB; Provisional | 98.17 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.15 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.14 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.14 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.12 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.1 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.09 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.09 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.08 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.07 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.06 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.05 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.0 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.0 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.0 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.97 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.96 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.94 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.91 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.87 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.86 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.84 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.78 | |
| COG5269 | 379 | ZUO1 Ribosome-associated chaperone zuotin [Transla | 97.78 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.74 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.72 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.69 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.69 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.64 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.63 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.6 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.59 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.57 | |
| KOG1150 | 250 | consensus Predicted molecular chaperone (DnaJ supe | 97.57 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.55 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.55 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.53 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.46 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.45 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.42 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.41 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.4 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.4 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.4 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.33 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.31 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.29 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.18 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.18 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.13 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.12 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.11 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.1 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.07 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.95 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.91 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.9 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 96.86 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 96.8 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 96.79 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.78 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.77 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.76 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.73 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.72 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.64 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.62 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.61 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.52 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.5 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.5 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.46 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.36 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.32 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.18 | |
| KOG0431 | 453 | consensus Auxilin-like protein and related protein | 96.17 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.13 | |
| KOG0568 | 342 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.1 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.06 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.0 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.91 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.85 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.74 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.66 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.65 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.58 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.56 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.51 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.4 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.16 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.15 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.11 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.98 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.96 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.83 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.76 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 94.73 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 94.71 | |
| KOG0723 | 112 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.68 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 94.63 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.62 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.57 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.46 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 94.35 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.34 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.34 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.34 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.31 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.18 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.16 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 94.13 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.07 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.06 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.97 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 93.95 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 93.92 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.57 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.52 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.42 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.37 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 93.29 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.09 | |
| KOG3192 | 168 | consensus Mitochondrial J-type chaperone [Posttran | 92.58 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 92.57 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 92.56 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 92.51 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 92.47 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 92.45 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 92.22 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 92.19 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.18 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 91.76 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 91.69 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 91.59 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.44 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.42 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 91.35 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 91.32 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 91.26 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.1 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 90.75 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 90.72 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.6 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 90.49 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 90.05 | |
| COG1076 | 174 | DjlA DnaJ-domain-containing proteins 1 [Posttransl | 89.84 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.81 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 89.59 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 89.17 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.06 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.74 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 88.66 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 88.54 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 88.15 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.03 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.84 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.46 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 87.28 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 87.02 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.59 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.43 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 86.36 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 86.34 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 85.82 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 85.5 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.46 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 85.38 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 85.34 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 85.15 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 84.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 84.86 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.75 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 84.68 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.54 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 83.33 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.73 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.63 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 82.62 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 82.4 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 82.28 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 82.03 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 81.81 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 81.23 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 81.18 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.02 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 80.39 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 80.28 |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=401.26 Aligned_cols=419 Identities=24% Similarity=0.317 Sum_probs=360.1
Q ss_pred hhHHHHHHHHHhchH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 594 LASAETIAAQEACEK--WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 594 ~A~a~~~aAIe~~e~--~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
+|...+.+||+..|. .++|.||.+|+.+|+-..|+.++.++|++.|++..|..++|.+++.+|++++|...|..+|+.
T Consensus 56 DALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 56 DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc
Confidence 456678888887776 447889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHH
Q 039706 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEV 751 (1166)
Q Consensus 672 ~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeA 751 (1166)
+|.+... .++...+.. +.+.+.....+......|++..||+++..+|++.|+++.++..+|.||...|+...|
T Consensus 136 ~~s~~~~----~eaqskl~~---~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~A 208 (504)
T KOG0624|consen 136 EPSNGLV----LEAQSKLAL---IQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKA 208 (504)
T ss_pred CCCcchh----HHHHHHHHh---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHH
Confidence 9975332 233333333 334445555555556789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhh
Q 039706 752 IQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIP 831 (1166)
Q Consensus 752 i~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~ 831 (1166)
|..++.+-++..++.+. .+.++.+++..|+.+.++..++.++..+++. +.|.+
T Consensus 209 I~Dlk~askLs~DnTe~-------------------------~ykis~L~Y~vgd~~~sL~~iRECLKldpdH--K~Cf~ 261 (504)
T KOG0624|consen 209 IHDLKQASKLSQDNTEG-------------------------HYKISQLLYTVGDAENSLKEIRECLKLDPDH--KLCFP 261 (504)
T ss_pred HHHHHHHHhccccchHH-------------------------HHHHHHHHHhhhhHHHHHHHHHHHHccCcch--hhHHH
Confidence 99999999887766543 3568899999999999999999999988773 56778
Q ss_pred hccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 832 LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 832 L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
.+...+.+...+.-+......++|.++++.+++.++.+|+..+.....+..+..|+..-+++.+||..|.++|.++|+++
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence 88888888888888888999999999999999999988665555666667788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhHHhhhhccCccchhhhcc
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILG 991 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~e~~~rk~~~~dyY~iLG 991 (1166)
.++..+|.+|+...+|+.|+.+|++|+++++.+.. +...+.+|++..++... .|||+|||
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~-------------~reGle~Akrlkkqs~k-------RDYYKILG 401 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR-------------AREGLERAKRLKKQSGK-------RDYYKILG 401 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH-------------HHHHHHHHHHHHHHhcc-------chHHHHhh
Confidence 99999999999999999999999999999877744 34557777776665442 59999999
Q ss_pred cCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhcccchhhh
Q 039706 992 VESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEE 1071 (1166)
Q Consensus 992 l~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~~YD~~~~ 1071 (1166)
|.++++..||.+||||+|.+||||... .+++++.|+++|..|..|-+||+||+||+.+|.+++
T Consensus 402 VkRnAsKqEI~KAYRKlAqkWHPDNFq-----------------dEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD 464 (504)
T KOG0624|consen 402 VKRNASKQEITKAYRKLAQKWHPDNFQ-----------------DEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED 464 (504)
T ss_pred hcccccHHHHHHHHHHHHHhcCCcccc-----------------CHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence 999999999999999999999999975 356789999999999999999999999999999998
Q ss_pred hhhhhccCCCCC
Q 039706 1072 TRNTQKKQNGSN 1083 (1166)
Q Consensus 1072 ~~~~~~~~~g~~ 1083 (1166)
+..+...++|+|
T Consensus 465 PLD~Es~q~GGG 476 (504)
T KOG0624|consen 465 PLDPESQQGGGG 476 (504)
T ss_pred CCChhhccCCCC
Confidence 876665544443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=363.49 Aligned_cols=378 Identities=30% Similarity=0.427 Sum_probs=322.9
Q ss_pred hhCcchhHHHHHHHHHhchH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 039706 589 KQEPNLASAETIAAQEACEK--WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFR 666 (1166)
Q Consensus 589 k~ep~~A~a~~~aAIe~~e~--~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fe 666 (1166)
++.+.++...+..||++|+. .+|.|||.+|+.+++|++|+-++++.++++|.+.+++.+.+.|+..+++..+|...|+
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence 44566777888899999987 4589999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC---CChHHHHHHHHHHHH
Q 039706 667 MCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS---SYSEKLLEMKAEALF 743 (1166)
Q Consensus 667 kALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~---P~~~~al~~lA~~y~ 743 (1166)
.. .| .....|+..+++.+... |....+..+.+.|+.
T Consensus 142 ~~---~~--------------------------------------~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~ 180 (486)
T KOG0550|consen 142 SK---QA--------------------------------------YKAANALPTLEKLAPSHSREPACFKAKLLKAECLA 180 (486)
T ss_pred hh---hh--------------------------------------hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhh
Confidence 11 00 01112333333333222 666788899999999
Q ss_pred HccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 039706 744 MLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGG 823 (1166)
Q Consensus 744 ~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~ 823 (1166)
.++++++|+...-..+++++.+..+ +++.|.++++.++.+.|+.+|++++..+|.
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~a-------------------------l~vrg~~~yy~~~~~ka~~hf~qal~ldpd 235 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEA-------------------------LYVRGLCLYYNDNADKAINHFQQALRLDPD 235 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHH-------------------------HHhcccccccccchHHHHHHHhhhhccChh
Confidence 9999999999999999998877654 456788999999999999999999888776
Q ss_pred chhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 824 KMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 824 k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
. .........+..+..+...|+.+++.|+|..|.++|++||.++|.+...++.+|+|+|.+...+|+..+|+.+|+.|
T Consensus 236 h--~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 236 H--QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred h--hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 4 33445566778888999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhHHhhhhccCc
Q 039706 904 IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIP 983 (1166)
Q Consensus 904 LeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~e~~~rk~~~ 983 (1166)
+.++|.++++|+.+|.||+.+++|++|+++|++|+++... -++.+.|++|+..|++.+ +
T Consensus 314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--------------~e~r~~l~~A~~aLkkSk---R---- 372 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--------------CEIRRTLREAQLALKKSK---R---- 372 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------cchHHHHHHHHHHHHHhh---h----
Confidence 9999999999999999999999999999999999987433 134566888888887554 2
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++||+.++++..+|+++||++||.||||++..+ +++||.+|+++++||.+|+||.+|
T Consensus 373 kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-------------------q~eaE~kFkevgeAy~il~d~~kr 433 (486)
T KOG0550|consen 373 KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-------------------QKEAEAKFKEVGEAYTILSDPMKR 433 (486)
T ss_pred hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-------------------hHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4999999999999999999999999999999998632 689999999999999999999999
Q ss_pred cccchhhhhhh
Q 039706 1064 SRYDLEEETRN 1074 (1166)
Q Consensus 1064 ~~YD~~~~~~~ 1074 (1166)
.+||.+.+.+.
T Consensus 434 ~r~dsg~dle~ 444 (486)
T KOG0550|consen 434 VRFDSGQDLEE 444 (486)
T ss_pred hhcccccchhh
Confidence 99999887655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=295.24 Aligned_cols=298 Identities=16% Similarity=0.167 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+|.|+|.++...|+++.|+..|+.+|+++|++.++|.++|.+|...|+.+.|.++|..+|+++|+..-.+..+..+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999986655555555555
Q ss_pred HhhhHHhHHHHHHHHHHHHH------------hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQ------------NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLC 755 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~------------~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~l 755 (1166)
..+++.++..++.++..... ...+|+...||.+|++|++++|...++|+++|.+|-.++.|++|+.+|
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 55555555555555433221 224899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccc
Q 039706 756 EQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGT 835 (1166)
Q Consensus 756 ekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~ 835 (1166)
.+++.+.|+...++ .++|.+|+.+|.++-|+..|++++...|
T Consensus 276 ~rAl~lrpn~A~a~-------------------------gNla~iYyeqG~ldlAI~~Ykral~~~P------------- 317 (966)
T KOG4626|consen 276 LRALNLRPNHAVAH-------------------------GNLACIYYEQGLLDLAIDTYKRALELQP------------- 317 (966)
T ss_pred HHHHhcCCcchhhc-------------------------cceEEEEeccccHHHHHHHHHHHHhcCC-------------
Confidence 99999999887663 3345555555555555555555533222
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
....++.++|+++-..|+..+|+.+|.+||.+. |..+.+.+|+|.+|..+|.+++|...|.+|++..|..+.++.
T Consensus 318 -~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~----p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n 392 (966)
T KOG4626|consen 318 -NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC----PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN 392 (966)
T ss_pred -CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence 223344444555555555555555555555544 444555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+||.+|..+|++++|+.+|++||.+.|.-.+..
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 555555555555555555555555555444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=290.26 Aligned_cols=328 Identities=16% Similarity=0.132 Sum_probs=260.3
Q ss_pred chhHHHhhhHHhhCcchhHHHHHHHH-------------------Hhch--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 578 RNSEVDRGQEIKQEPNLASAETIAAQ-------------------EACE--KWRLSNRAATRMALGRMRDALSDCMLAVA 636 (1166)
Q Consensus 578 ~~a~~~~~~aik~ep~~A~a~~~aAI-------------------e~~e--~~ay~nrA~ayl~lG~y~eAI~~fekALe 636 (1166)
..++..+..++.+.|++..++...|+ .+.| ..+...+|..+-.+|+..+|..+|.+||+
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 45566666666666666555443222 2222 23345566666666666666666666666
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH---------
Q 039706 637 IDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQ--------- 707 (1166)
Q Consensus 637 ldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~--------- 707 (1166)
.+|.++-+|..||-++..+|+...|+++|++|++++|....++..+..++..+....++..++.++.....
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl 292 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL 292 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce
Confidence 66666666666666666666666666666666666666666665566655555555555555544432211
Q ss_pred ---hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchh
Q 039706 708 ---NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSEST 784 (1166)
Q Consensus 708 ---~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~ 784 (1166)
++.+|..+-||..|+++|++.|..++++.++|.++-..|+..+|..+|.++|.+.|+.+++
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada---------------- 356 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA---------------- 356 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH----------------
Confidence 4568999999999999999999999999999999999999999999999999999987654
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHH
Q 039706 785 KHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTA 864 (1166)
Q Consensus 785 ~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~k 864 (1166)
..+||.+|..+|.+++|...|.++ +...+..+.++.++|.+|.++|++++|+.+|++
T Consensus 357 ---------m~NLgni~~E~~~~e~A~~ly~~a--------------l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 357 ---------MNNLGNIYREQGKIEEATRLYLKA--------------LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred ---------HHHHHHHHHHhccchHHHHHHHHH--------------HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 467999999999999999999998 444555678889999999999999999999999
Q ss_pred HHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 865 ALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 865 ALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
||.+. |..+.+|.|+|.+|..+|+...|+.+|.+||.++|.+++|+.+||.+|...|+..+|+..|+.||++.|+-
T Consensus 414 alrI~----P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 414 ALRIK----PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHhcC----chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhh
Q 039706 945 IEKS 948 (1166)
Q Consensus 945 ~e~~ 948 (1166)
.++.
T Consensus 490 pdA~ 493 (966)
T KOG4626|consen 490 PDAY 493 (966)
T ss_pred chhh
Confidence 7754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-24 Score=268.19 Aligned_cols=314 Identities=18% Similarity=0.131 Sum_probs=251.3
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA 654 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~ 654 (1166)
..++.|+..+.++|...|+ +..|+|+|.+|+.+|+|++|+.+|.+||+++|++.++|+++|.+|..
T Consensus 141 ~~~~~Ai~~y~~al~~~p~--------------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKPD--------------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred CCHHHHHHHHHHHHhcCCc--------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3456666666666666664 13578999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCchhHHHHHHHH-HHH--hhhHHh--------------HHHH-------------------
Q 039706 655 LGEIEDASKYFRMCLQSGSDVCVDQKIAVEA-SDG--LQKAQK--------------VSEC------------------- 698 (1166)
Q Consensus 655 lGd~eeAl~~fekALel~P~n~~a~~~l~Ea-~~~--L~k~~~--------------~~e~------------------- 698 (1166)
+|++++|+..|..++.+++........+.+. ... ...... +..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999999988877655432111111000 000 000000 0000
Q ss_pred --------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 699 --------MQRSAQLLQNKTSNDAEIALGVIDEALFIS---SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 699 --------~~~a~~~l~~~~~gd~eeALe~lekALel~---P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.............++|++|+..|++++... |....++..+|.+++.+|++++|+..|++++.++|.+..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 000001111123468999999999999864 777889999999999999999999999999999886532
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
.+..+|.++..+|++++|+..|++++...+ .....+..+|.
T Consensus 367 -------------------------~~~~la~~~~~~g~~~eA~~~~~~al~~~p--------------~~~~~~~~lg~ 407 (615)
T TIGR00990 367 -------------------------SYIKRASMNLELGDPDKAEEDFDKALKLNS--------------EDPDIYYHRAQ 407 (615)
T ss_pred -------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------CCHHHHHHHHH
Confidence 256789999999999999999999855433 34566778899
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
+++..|++++|+.+|++++.++ |.+..+|.++|.++..+|++++|+..|++++.+.|+++.++..+|.+|..+|++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLD----PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC----ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 9999999999999999999998 888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 039706 928 DHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~ 945 (1166)
++|+..|++++++.|+..
T Consensus 484 ~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETK 501 (615)
T ss_pred HHHHHHHHHHHhcCCccc
Confidence 999999999999988753
|
|
| >COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-26 Score=261.74 Aligned_cols=152 Identities=28% Similarity=0.392 Sum_probs=118.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.+|||+||||||++||||+++. .++|+++|++|+|||+|||||+||
T Consensus 4 ~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g--------------------~~~AeeKFKEI~eAYEVLsD~eKR 63 (371)
T COG0484 4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG--------------------DKEAEEKFKEINEAYEVLSDPEKR 63 (371)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------------------CHHHHHHHHHHHHHHHHhCCHHHH
Confidence 599999999999999999999999999999999973 168999999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC------CCCCCCCceEEeeeeeeecccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD------NSAARGDIYSISFNLRIASNKRCY 1137 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~------~~~~rG~~~~~~~~lsf~ea~~G~ 1137 (1166)
+.||+++..... .+|++++++. .|+. .....|.++|++.. ...++|.++.+.+.|+|+||++|+
T Consensus 64 a~YD~fG~~~~~---~gg~gg~g~~------~fgg-~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~ 133 (371)
T COG0484 64 AAYDQFGHAGFK---AGGFGGFGFG------GFGG-DFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGV 133 (371)
T ss_pred HHhhccCccccc---cCCcCCCCcC------CCCC-CHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCc
Confidence 999999875432 1111111110 1111 12244666664221 234479999999999999999999
Q ss_pred cceeeceeeeee-eecceeeeeecccccc
Q 039706 1138 RPFVTIREFMAC-ACQWRYQIVESQTEDC 1165 (1166)
Q Consensus 1138 ~K~i~~~~~~~C-~C~G~~q~~~~~~~~c 1165 (1166)
++.|.+.+..+| +|+|+|-.--..+++|
T Consensus 134 ~~~i~~~~~~~C~~C~GsGak~gt~~~tC 162 (371)
T COG0484 134 KKEIRVTRSVTCSTCHGSGAKPGTDPKTC 162 (371)
T ss_pred eeeEecceeeECCcCCCCCCCCCCCCCcC
Confidence 999999999999 9998876666666666
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=238.16 Aligned_cols=336 Identities=23% Similarity=0.242 Sum_probs=258.9
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
+++.++.-|.++|.++|.+. ..|.||..+|..+|+|.+|+.+..+.++++|.++++|.++|.+++-+
T Consensus 17 d~~~ai~~~t~ai~l~p~nh-------------vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSPTNH-------------VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred cHHHHHHHHHHHHccCCCcc-------------chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 34555555555555555533 23677999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhH-------------------------------------------
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKA------------------------------------------- 692 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~------------------------------------------- 692 (1166)
|+|++|+..|.+.|+.+|++......+.++.......
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999999999999999866555554443111000
Q ss_pred -----HhHHH--------------------------------------------------HHHHHHHHHHhhcCCCHHHH
Q 039706 693 -----QKVSE--------------------------------------------------CMQRSAQLLQNKTSNDAEIA 717 (1166)
Q Consensus 693 -----~~~~e--------------------------------------------------~~~~a~~~l~~~~~gd~eeA 717 (1166)
..+.. ........-..+...++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 00000 00000000112336778899
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHH
Q 039706 718 LGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLI 797 (1166)
Q Consensus 718 Le~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lL 797 (1166)
+++|..+++++ .+...+.++|.+|+.++.+.+++..+..+++.....- .+...+. -.+..+
T Consensus 244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-----------ad~klIa-------k~~~r~ 304 (539)
T KOG0548|consen 244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-----------ADYKLIA-------KALARL 304 (539)
T ss_pred HHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-----------HHHHHHH-------HHHHHh
Confidence 99999999999 8889999999999999999999999999887644211 1111111 112447
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCch-------hhhhhh-----hccchHHHHHHhhhhHHHHHcCChHHHHHHHHHH
Q 039706 798 FKSYFTLGRLEEAIAALERHESGNGGKM-------LESLIP-----LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAA 865 (1166)
Q Consensus 798 A~ay~~lGd~eeAl~~lekAl~~~~~k~-------le~a~~-----L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kA 865 (1166)
|.+|...++++.|+.+|++++....... .+.... ....+..+...+..|+.+|+.|+|..|+.+|++|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8899999999999999999765322211 111111 1223344566677899999999999999999999
Q ss_pred HhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 866 LSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 866 Lel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
|..+ |.++.+|+|+|.||.+++.+..|+.+|+++++++|++..+|++.|.++..+.+|+.|+..|+++++++|++.
T Consensus 385 Ikr~----P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 385 IKRD----PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HhcC----CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 9988 999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred Hh
Q 039706 946 EK 947 (1166)
Q Consensus 946 e~ 947 (1166)
+.
T Consensus 461 e~ 462 (539)
T KOG0548|consen 461 EA 462 (539)
T ss_pred HH
Confidence 64
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=250.51 Aligned_cols=313 Identities=13% Similarity=0.024 Sum_probs=258.4
Q ss_pred CcchhHHHHHHHHH--hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 591 EPNLASAETIAAQE--ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 591 ep~~A~a~~~aAIe--~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
++..+.+.+..++. +....+++.+|.+++..|++++|+..|++++.++|++..++..+|.++..+|++++|+..|+++
T Consensus 57 ~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444 4445778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH-----------HHHHhhcCCCHHHHHHHHHHHHHhCC-ChHHHHH
Q 039706 669 LQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA-----------QLLQNKTSNDAEIALGVIDEALFISS-YSEKLLE 736 (1166)
Q Consensus 669 Lel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~-----------~~l~~~~~gd~eeALe~lekALel~P-~~~~al~ 736 (1166)
++++|++...+..+..++...++...+...+..+. ........|++++|+..+++++...| .....+.
T Consensus 137 l~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~ 216 (656)
T PRK15174 137 WLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAG 216 (656)
T ss_pred HHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHH
Confidence 99999988777777666666555554443332221 01123457999999999999998876 3344556
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHH----HHH
Q 039706 737 MKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEE----AIA 812 (1166)
Q Consensus 737 ~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~ee----Al~ 812 (1166)
.++.++..+|++++|+..|++++.+.|++... +..+|.+|...|++++ |+.
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~-------------------------~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAAL-------------------------RRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH-------------------------HHHHHHHHHHcCCchhhHHHHHH
Confidence 67889999999999999999999988764321 4568999999999986 799
Q ss_pred HHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc
Q 039706 813 ALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH 892 (1166)
Q Consensus 813 ~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq 892 (1166)
.|++++...| .....+..+|.++...|++++|+.+|++++.++ |.++.++.++|.+|..+|+
T Consensus 272 ~~~~Al~l~P--------------~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~----P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 272 HWRHALQFNS--------------DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH----PDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHHHHHhhCC--------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCC
Confidence 9998754443 345667778999999999999999999999988 8888999999999999999
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 893 ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 893 ~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+++|+..|++++..+|++..++..+|.++..+|++++|+..|++++++.|+...
T Consensus 334 ~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 334 YTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 999999999999999999888888899999999999999999999999998764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=251.04 Aligned_cols=264 Identities=16% Similarity=0.147 Sum_probs=208.2
Q ss_pred CChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHH
Q 039706 622 GRMRDALSDCMLAVAI---DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSEC 698 (1166)
Q Consensus 622 G~y~eAI~~fekALel---dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~ 698 (1166)
++|++|+..|++++.+ .|....+|..+|.++..+|++++|+.+|++++.++|.+...+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~------------------ 369 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI------------------ 369 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH------------------
Confidence 4566666667776665 3566667777777777777777777777777777776432111
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 699 MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 699 ~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
..+.+ +...|++++|+..|+++++++|.++.+++.+|.+++.+|++++|+.+|++++.+.|++..
T Consensus 370 --~la~~--~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~----------- 434 (615)
T TIGR00990 370 --KRASM--NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF----------- 434 (615)
T ss_pred --HHHHH--HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH-----------
Confidence 11111 234799999999999999999999999999999999999999999999999999886532
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
.+..+|.+++.+|++++|+..|++++...+ .....+..+|.++...|++++|
T Consensus 435 --------------~~~~la~~~~~~g~~~eA~~~~~~al~~~P--------------~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 435 --------------SHIQLGVTQYKEGSIASSMATFRRCKKNFP--------------EAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred --------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHccCHHHH
Confidence 245789999999999999999999854333 3355677789999999999999
Q ss_pred HHHHHHHHhccccCCch--hHHHHHHHHHHH-HHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 859 VEHYTAALSCTVESHPF--AAICFCNRAAAY-KALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~--~a~a~~nlA~ay-~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
+..|++|+.+.+...+. ....+.+.+.++ ...|++++|+..|++++.++|++..++..+|.+|..+|++++|+.+|+
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998543222 222334444444 447999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHH
Q 039706 936 RLIALLTKQIE 946 (1166)
Q Consensus 936 kALeL~P~~~e 946 (1166)
+++++.+...+
T Consensus 567 ~A~~l~~~~~e 577 (615)
T TIGR00990 567 RAAELARTEGE 577 (615)
T ss_pred HHHHHhccHHH
Confidence 99998766433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-22 Score=260.91 Aligned_cols=306 Identities=15% Similarity=0.057 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
|.+..+|.+++..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|++...+..+..++..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 44566789999999999999999999999999999999999999999999999999999999999987666555444321
Q ss_pred hhhHHhHHHHHHH---------------------HHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC
Q 039706 689 LQKAQKVSECMQR---------------------SAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK 747 (1166)
Q Consensus 689 L~k~~~~~e~~~~---------------------a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd 747 (1166)
. ...++..++.. ......+...|++++|+..|+++++++|+++.+++.+|.+|..+|+
T Consensus 432 ~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 Q-SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred c-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 1 11111111110 0011113358999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhh
Q 039706 748 YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLE 827 (1166)
Q Consensus 748 yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le 827 (1166)
+++|+..+++++...|.++..+ +.++..+...+++++|+.+++++........+.
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~-------------------------~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQV-------------------------YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHH-------------------------HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 9999999999999988775542 223333444455555555544422111100000
Q ss_pred hh-hh-------------------------hccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHH
Q 039706 828 SL-IP-------------------------LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFC 881 (1166)
Q Consensus 828 ~a-~~-------------------------L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~ 881 (1166)
.. .. +...+.....+..+|.++...|++++|+.+|+++++++ |.+..+++
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~----P~~~~a~~ 641 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE----PGNADARL 641 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHH
Confidence 00 00 00011122334456667777777777777777777666 66666777
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 882 NRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 882 nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
++|.+|..+|++++|++.|+++++..|+++.++..+|.++..+|++++|+..|++++...|+.
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 777777777777777777777777777777777777777777777777777777776665443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=240.59 Aligned_cols=343 Identities=15% Similarity=0.134 Sum_probs=264.6
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHH-------------------HH--hchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAA-------------------QE--ACEKWRLSNRAATRMALGRMRDALSDCMLA 634 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aA-------------------Ie--~~e~~ay~nrA~ayl~lG~y~eAI~~fekA 634 (1166)
.+..++..+..++..+|+........+ +. +..+..++.+|.+|...|++++|+..|+++
T Consensus 412 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 412 DPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred ChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345566667777776665443322211 11 123456888999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH-----------
Q 039706 635 VAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA----------- 703 (1166)
Q Consensus 635 LeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~----------- 703 (1166)
++++|.+..+++.+|.++...|++++|+..|++++...|.+...+..+..++...++...+...+..+.
T Consensus 492 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 571 (899)
T TIGR02917 492 LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571 (899)
T ss_pred HhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHH
Confidence 999999999999999999999999999999999999999887766666666655555544444433321
Q ss_pred -HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 704 -QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 704 -~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
....+...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|.+...
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------------- 637 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA-------------- 637 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH--------------
Confidence 11113458999999999999999999999999999999999999999999999999888765432
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh---------------hhhhhh-----ccchHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML---------------ESLIPL-----AGTVRELLCR 842 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l---------------e~a~~L-----~~~~~~a~~l 842 (1166)
+..++.+|...|++++|+..|++++...+.... ..+..+ ...+.....+
T Consensus 638 -----------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 706 (899)
T TIGR02917 638 -----------LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF 706 (899)
T ss_pred -----------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH
Confidence 345677777777777777777776654443110 000000 1112234456
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
..+|.++...|++++|+..|++++... |.. ..+.+++.++..+|++++|+..+++++..+|++..+++.+|.+|.
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA----PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC----CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 667999999999999999999999887 433 677889999999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 923 MIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 923 ~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+|++++|+..|+++++..|++....
T Consensus 782 ~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999998876544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=242.22 Aligned_cols=359 Identities=11% Similarity=0.000 Sum_probs=257.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
...+..++..|++.+|+..++.++...|.+..+++.+|.+++..|++++|+..|++++.++|++...+..+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la-------- 117 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVA-------- 117 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHH--------
Confidence 345778899999999999999999999999999999999999999999999999999999999754332221
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
.. +...|++++|+..|++++.+.|.++.++..++.++..+|++++|+..+++++...|.....
T Consensus 118 ------------~~--l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a--- 180 (656)
T PRK15174 118 ------------SV--LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM--- 180 (656)
T ss_pred ------------HH--HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH---
Confidence 11 2347999999999999999999999999999999999999999999999998888865322
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ 851 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~ 851 (1166)
+..+ ..++..|++++|+..+++++...+.. ....+..++.++..
T Consensus 181 ----------------------~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~-------------~~~~~~~l~~~l~~ 224 (656)
T PRK15174 181 ----------------------IATC-LSFLNKSRLPEDHDLARALLPFFALE-------------RQESAGLAVDTLCA 224 (656)
T ss_pred ----------------------HHHH-HHHHHcCCHHHHHHHHHHHHhcCCCc-------------chhHHHHHHHHHHH
Confidence 1112 24677888888888888865433211 01112334677788
Q ss_pred cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH----HHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD----AIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 852 ~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee----Ai~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
.|++++|+..|++++.+. |.++.+++++|.+|..+|++++ |+..|+++++++|+++.++..+|.++..+|++
T Consensus 225 ~g~~~eA~~~~~~al~~~----p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 225 VGKYQEAIQTGESALARG----LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred CCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 888888888888888877 7778888888888888888885 78888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhHHhhhhccCccchhhhcc--cCCCCCHHHHHHHH
Q 039706 928 DHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILG--VESSVSVADIKRGY 1005 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~e~~~rk~~~~dyY~iLG--l~~~as~~eIkkaY 1005 (1166)
++|+..|++++++.|++.......+..- .-.+....|...+..+-.... . ...++..++ +......++-.. +
T Consensus 301 ~eA~~~l~~al~l~P~~~~a~~~La~~l---~~~G~~~eA~~~l~~al~~~P-~-~~~~~~~~a~al~~~G~~deA~~-~ 374 (656)
T PRK15174 301 EKAIPLLQQSLATHPDLPYVRAMYARAL---RQVGQYTAASDEFVQLAREKG-V-TSKWNRYAAAALLQAGKTSEAES-V 374 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHhCc-c-chHHHHHHHHHHHHCCCHHHHHH-H
Confidence 8888888888888888766543222110 001122233333322221111 1 111111111 222333444444 4
Q ss_pred HHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 1006 RKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 1006 rklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+.+++.+|+..+. .-++.-..+.++++.+..+.+|
T Consensus 375 l~~al~~~P~~~~~----------------------~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 375 FEHYIQARASHLPQ----------------------SFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHHhChhhchh----------------------hHHHHHHHHHHHHHhcCCccch
Confidence 45566668998642 2234556788888888888766
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=255.86 Aligned_cols=312 Identities=13% Similarity=0.047 Sum_probs=233.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
..+|.+++..|++++|+..|+++++++|++..++..+|.+|..+|++++|+.+|+++++++|++..... +..+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~-~~~l------ 345 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK-WESL------ 345 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH-HHHH------
Confidence 456999999999999999999999999999999999999999999999999999999999998543111 0000
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
.....++............|++++|+..|++++.++|.+..++..+|.+|..+|++++|+..|+++++++|.+..++..
T Consensus 346 -l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~ 424 (1157)
T PRK11447 346 -LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRG 424 (1157)
T ss_pred -HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0001111112222223458999999999999999999999999999999999999999999999999999988765443
Q ss_pred cCcccccCccchhh-----------------hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 772 NGQSMELDSSESTK-----------------HVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~-----------------~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
++.++......... ........+..+|.++...|++++|+..|++++...|.
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~----------- 493 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG----------- 493 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------
Confidence 33322111000000 00011223456788899999999999999998554443
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHH-----------
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLA----------- 903 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekA----------- 903 (1166)
..+.+..+|.+|...|++++|+..|++++.+. |.++..++.++..+...+++++|+..++++
T Consensus 494 ---~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~----P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~ 566 (1157)
T PRK11447 494 ---SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK----PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQE 566 (1157)
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHH
Confidence 35567778999999999999999999999877 666666666666665666666655554431
Q ss_pred -----------------------------HHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhc
Q 039706 904 -----------------------------IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSN 949 (1166)
Q Consensus 904 -----------------------------LeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~ 949 (1166)
++..|.++.+++.+|.+|..+|++++|+..|++++++.|++.+...
T Consensus 567 l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~ 641 (1157)
T PRK11447 567 LAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL 641 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2346777788888888888888888888888888888888776553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-21 Score=242.87 Aligned_cols=297 Identities=18% Similarity=0.117 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+++.+|..++..|+|++|+..+++++.++|.++.+++.+|.+|..+|++++|+..|++++...|........+..++.
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL 101 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999999999999987655555555555
Q ss_pred HhhhHHhHHHHHHHH-------------HHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 688 GLQKAQKVSECMQRS-------------AQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a-------------~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
..++...+...+... .....+...|++++|+..|++++..+|.+..++..+|.+++..|++++|+..
T Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (899)
T TIGR02917 102 LQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL 181 (899)
T ss_pred HCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHH
Confidence 444444433332211 1112234589999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
+++++...|.+... +..+|.+++..|++++|+..|++++...+.
T Consensus 182 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~----------- 225 (899)
T TIGR02917 182 IDEVLTADPGNVDA-------------------------LLLKGDLLLSLGNIELALAAYRKAIALRPN----------- 225 (899)
T ss_pred HHHHHHhCCCChHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----------
Confidence 99999987754321 456889999999999999999998554333
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
....+..++.++...|++++|...+++++... |....+++.+|.++...|++++|+..|++++..+|++..++
T Consensus 226 ---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 298 (899)
T TIGR02917 226 ---NPAVLLALATILIEAGEFEEAEKHADALLKKA----PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298 (899)
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHH
Confidence 34456677889999999999999999999877 66677888899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
+.+|.++..+|++++|+..|+++++..|.+...
T Consensus 299 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 331 (899)
T TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 999999999999999999999999998876543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=227.88 Aligned_cols=313 Identities=11% Similarity=-0.061 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.++..+|.++...|++++|+..++++++.+|++.. ++.+|.++...|++++|+..|++++++.|++...+..+..++..
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44556888888899999999999999999999888 88899999999999999999999999988876554433332211
Q ss_pred hhhHH----------------------------------------------hHHHHHHHHHH------------------
Q 039706 689 LQKAQ----------------------------------------------KVSECMQRSAQ------------------ 704 (1166)
Q Consensus 689 L~k~~----------------------------------------------~~~e~~~~a~~------------------ 704 (1166)
..... .+...+..+..
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 11000 00000000000
Q ss_pred -HHHhhcCCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 705 -LLQNKTSNDAEIALGVIDEALFISSYS-EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 705 -~l~~~~~gd~eeALe~lekALel~P~~-~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
+......+++++|+..|+++++..|.. ..+...+|.+|+.+|++++|+..|++++...|.+...
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~-------------- 308 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADL-------------- 308 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC--------------
Confidence 001124577888888888887775432 2234446788888888888888888887765543110
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh-hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML-ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEH 861 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l-e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~ 861 (1166)
.......++.++...|++++|+..++++....+.... .......+.......+..+|.++...|++++|++.
T Consensus 309 -------~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 309 -------SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred -------ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0011234666788999999999999987665443210 00001112223345666789999999999999999
Q ss_pred HHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 862 YTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 862 y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
|++++... |.+..++..+|.++...|++++|++.+++++.++|++..+++.+|.+++.++++++|...++++++..
T Consensus 382 l~~al~~~----P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 382 ARELAYNA----PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHhC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999988 88899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHh
Q 039706 942 TKQIEK 947 (1166)
Q Consensus 942 P~~~e~ 947 (1166)
|++...
T Consensus 458 Pd~~~~ 463 (765)
T PRK10049 458 PQDPGV 463 (765)
T ss_pred CCCHHH
Confidence 998753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=205.34 Aligned_cols=312 Identities=17% Similarity=0.183 Sum_probs=244.7
Q ss_pred hCcchhHHHHHHHHHhchH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039706 590 QEPNLASAETIAAQEACEK--WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRM 667 (1166)
Q Consensus 590 ~ep~~A~a~~~aAIe~~e~--~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fek 667 (1166)
.+++.|+.++..||++||. ..|.||+.||..+|+|++-++++.+||+++|++.++++++|.++..+|++++|+....-
T Consensus 129 kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv 208 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV 208 (606)
T ss_pred ccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence 3456678899999999986 56899999999999999999999999999999999999999999999999999988764
Q ss_pred HHHcCC-Cc----hhHHHHHHH-----HHHHhhh-HH-----------------------------hHHHHHHHHHHHHH
Q 039706 668 CLQSGS-DV----CVDQKIAVE-----ASDGLQK-AQ-----------------------------KVSECMQRSAQLLQ 707 (1166)
Q Consensus 668 ALel~P-~n----~~a~~~l~E-----a~~~L~k-~~-----------------------------~~~e~~~~a~~~l~ 707 (1166)
.--++- ++ +...+.|-. +...+.. -. +.......+...+.
T Consensus 209 ~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~ 288 (606)
T KOG0547|consen 209 LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALE 288 (606)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHH
Confidence 322211 11 111111100 1111110 00 00011112222222
Q ss_pred hhcCCCHHHHHHHHHHHHHhC----CCh---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCc
Q 039706 708 NKTSNDAEIALGVIDEALFIS----SYS---------EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQ 774 (1166)
Q Consensus 708 ~~~~gd~eeALe~lekALel~----P~~---------~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~ 774 (1166)
......|..|...+.+..... ..+ +.++.++|..++..|++-.|...+..++.++|.+...
T Consensus 289 ~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l------ 362 (606)
T KOG0547|consen 289 KGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL------ 362 (606)
T ss_pred hhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH------
Confidence 222346777777776654332 112 5778889999999999999999999999998865431
Q ss_pred ccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCC
Q 039706 775 SMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGR 854 (1166)
Q Consensus 775 ~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~ 854 (1166)
|..++.+|....+.++....|.+|...++. ....|+.+|.+++-+++
T Consensus 363 -------------------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--------------n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 363 -------------------YIKRAAAYADENQSEKMWKDFNKAEDLDPE--------------NPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred -------------------HHHHHHHHhhhhccHHHHHHHHHHHhcCCC--------------CCchhHhHHHHHHHHHH
Confidence 456899999999999999999998665544 35667778999999999
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHH
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDF 934 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~y 934 (1166)
|++|+..|++++.++ |.++..|..++.+.++++++++++..|+.++...|+.++.|...|.++..+++|++|++.|
T Consensus 410 ~e~A~aDF~Kai~L~----pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 410 YEEAIADFQKAISLD----PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 039706 935 HRLIALLTKQ 944 (1166)
Q Consensus 935 ekALeL~P~~ 944 (1166)
.+|++|.|..
T Consensus 486 D~ai~LE~~~ 495 (606)
T KOG0547|consen 486 DKAIELEPRE 495 (606)
T ss_pred HHHHhhcccc
Confidence 9999998883
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-19 Score=208.75 Aligned_cols=280 Identities=14% Similarity=0.071 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
..|.+|..++..|++++|+..|+++++.+|++..++..+|.+|...|++++|+..+++++...+.... .
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~---------- 105 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE-Q---------- 105 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH-H----------
Confidence 35668999999999999999999999999999999999999999999999999999998874322110 0
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
. ...+..+... +...|++++|+..|+++++..|....++..++.++...|++++|+..+++++...|.....
T Consensus 106 ----~-~~~~~~La~~--~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 177 (389)
T PRK11788 106 ----R-LLALQELGQD--YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV- 177 (389)
T ss_pred ----H-HHHHHHHHHH--HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-
Confidence 0 0111222222 2357999999999999999999999999999999999999999999999999877643210
Q ss_pred cccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 770 DANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 770 ~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
.....+..+|.++...|++++|+.+|++++...+. ....+..+|..+
T Consensus 178 -------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------------~~~~~~~la~~~ 224 (389)
T PRK11788 178 -------------------EIAHFYCELAQQALARGDLDAARALLKKALAADPQ--------------CVRASILLGDLA 224 (389)
T ss_pred -------------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC--------------CHHHHHHHHHHH
Confidence 01112456889999999999999999997543322 244566789999
Q ss_pred HHcCChHHHHHHHHHHHhccccCCchh-HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHH
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHPFA-AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p~~-a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdye 928 (1166)
...|++++|++.|++++..+ |.. ..++..++.+|..+|++++|+..++++++..|+... +..++.++...|+++
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~ 299 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQD----PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPE 299 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHC----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHH
Confidence 99999999999999999876 443 567888999999999999999999999999998754 488999999999999
Q ss_pred HHHHHHHHHHHHhhhhHH
Q 039706 929 HAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 929 eAi~~yekALeL~P~~~e 946 (1166)
+|+..|+++++..|+...
T Consensus 300 ~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 300 AAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHHHHHHHHHHhCcCHHH
Confidence 999999999999887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=213.50 Aligned_cols=268 Identities=14% Similarity=0.116 Sum_probs=227.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~ 694 (1166)
+.....+-+..+|+..|.+.-...++-..++.++|++|+.+++|++|..+|+.+-++.|--.....++..++-.|++.-
T Consensus 326 ~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v- 404 (638)
T KOG1126|consen 326 GYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV- 404 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH-
Confidence 3334445677999999999666777888999999999999999999999999999999874443333333332332211
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccC
Q 039706 695 VSECMQRSAQLLQNKTSNDAEIALGV-IDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANG 773 (1166)
Q Consensus 695 ~~e~~~~a~~~l~~~~~gd~eeALe~-lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g 773 (1166)
++.+ .+.++..+|..|+.|..+|.||-.+++++.||.++++|++++|....+
T Consensus 405 ----------------------~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa----- 457 (638)
T KOG1126|consen 405 ----------------------ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA----- 457 (638)
T ss_pred ----------------------HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh-----
Confidence 1222 234677899999999999999999999999999999999999976543
Q ss_pred cccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC
Q 039706 774 QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853 (1166)
Q Consensus 774 ~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G 853 (1166)
|.++|.-+....++|.|..+|+.| +...++...+|+.+|.+|.+++
T Consensus 458 --------------------yTLlGhE~~~~ee~d~a~~~fr~A--------------l~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 458 --------------------YTLLGHESIATEEFDKAMKSFRKA--------------LGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred --------------------hhhcCChhhhhHHHHhHHHHHHhh--------------hcCCchhhHHHHhhhhheeccc
Confidence 567888889999999999999998 4455667788999999999999
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
+++.|.-+|++|++++ |.+..+.+.+|.++.++|+.++|+..|++|+.++|.++-..+.+|.++..+++|++|+..
T Consensus 504 k~e~Ae~~fqkA~~IN----P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEIN----PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred hhhHHHHHHHhhhcCC----ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHhh
Q 039706 934 FHRLIALLTKQIEKS 948 (1166)
Q Consensus 934 yekALeL~P~~~e~~ 948 (1166)
+++..++.|++....
T Consensus 580 LEeLk~~vP~es~v~ 594 (638)
T KOG1126|consen 580 LEELKELVPQESSVF 594 (638)
T ss_pred HHHHHHhCcchHHHH
Confidence 999999999886543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=221.89 Aligned_cols=307 Identities=10% Similarity=-0.010 Sum_probs=208.1
Q ss_pred HhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 604 EACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 604 e~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
++.+..++.++|.++...|++.+|+..|+++++++|.+..++..+|.++...|++++|+..++++++..|++.. +..+
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l- 122 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL- 122 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH-
Confidence 34445557889999999999999999999999999999999999999999999999999999999999998643 2111
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAE 763 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p 763 (1166)
..+ +...|++++|+..|++++++.|.++.++..++.++...+..++|+..+++++. .|
T Consensus 123 -------------------a~~--l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 123 -------------------AYV--YKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred -------------------HHH--HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 111 22479999999999999999999999999999999999999999988886554 32
Q ss_pred CCCCCc----------cc--------------------cCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 039706 764 KNSPPL----------DA--------------------NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAA 813 (1166)
Q Consensus 764 ~n~~a~----------~~--------------------~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~ 813 (1166)
...... .. +..++...+...........++...++ +++..|++++|+..
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHH
Confidence 210000 00 000000000000000001111111133 34677999999999
Q ss_pred HHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhch
Q 039706 814 LERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHI 893 (1166)
Q Consensus 814 lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ 893 (1166)
|++++...+. .+..+..+ +|.+|+..|++++|+.+|++++..++.........+..++.++...|++
T Consensus 260 ~~~ll~~~~~-----------~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 260 YQRLKAEGQI-----------IPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhccCCC-----------CCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 9997543211 01122222 3667777777777777777777655221111134555666677777777
Q ss_pred hHHHHHHHHHHHhCCC---------------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 894 TDAIADCNLAIALDGN---------------YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 894 eeAi~~lekALeldP~---------------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
++|+..+++++...|. ...++..+|.++...|++++|+..|++++...|.+.+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~ 396 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR 396 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 7777777777777652 245666777777777777777777777777777775544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-18 Score=205.89 Aligned_cols=360 Identities=16% Similarity=0.066 Sum_probs=227.1
Q ss_pred ccccccccCCCCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHH
Q 039706 566 RGDLFSSRLKGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF-LRV 644 (1166)
Q Consensus 566 r~~~~~~l~~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~-~~A 644 (1166)
+.-++..+.+.++.|..++.-.+++.|++..+-+. +|.+.+..++|..|+.+|++||.++|.. +..
T Consensus 135 ~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlG-------------kA~i~ynkkdY~~al~yyk~al~inp~~~aD~ 201 (1018)
T KOG2002|consen 135 RGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLG-------------KARIAYNKKDYRGALKYYKKALRINPACKADV 201 (1018)
T ss_pred hhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHH-------------HHHHHhccccHHHHHHHHHHHHhcCcccCCCc
Confidence 33445556666788888999999999998877776 5666666666666666666666666654 345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHH-------------------
Q 039706 645 QVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL------------------- 705 (1166)
Q Consensus 645 ~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~------------------- 705 (1166)
.+.+|.|+..+|+.+.|+..|+++++++|.+..+.-.|..+.......+.....+..+..+
T Consensus 202 rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy 281 (1018)
T KOG2002|consen 202 RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY 281 (1018)
T ss_pred cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh
Confidence 5666666666666666666666666666654433333333222222111111111111100
Q ss_pred ---------------------------------HHhhcCCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHccCHHHH
Q 039706 706 ---------------------------------LQNKTSNDAEIALGVIDEALFISSYS-EKLLEMKAEALFMLRKYEEV 751 (1166)
Q Consensus 706 ---------------------------------l~~~~~gd~eeALe~lekALel~P~~-~~al~~lA~~y~~lGdyeeA 751 (1166)
-.+..+|+|++|..+|.+++..++++ .-.++.+|..|+..|+++.|
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHH
Confidence 01223667777777777777666666 55566667777777777777
Q ss_pred HHHHHHHHHhccCCCCCccccCcccccCccc-----hh-----hhh---hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 752 IQLCEQTFHFAEKNSPPLDANGQSMELDSSE-----ST-----KHV---SFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 752 i~~lekALel~p~n~~a~~~~g~~l~ld~~~-----~~-----~~~---~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
+.+|+++++..|++.....++|.++...... .. +.. ......|..++.+|. .++.-.++.+|..|+
T Consensus 362 ~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 362 KFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE-QTDPWASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH-hcChHHHHHHHHHHH
Confidence 7777777777666665554444433222100 00 000 000112223333332 233333355555542
Q ss_pred cCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc-----ccC-CchhHHHHHHHHHHHHHhhc
Q 039706 819 SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT-----VES-HPFAAICFCNRAAAYKALRH 892 (1166)
Q Consensus 819 ~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~-----~e~-~p~~a~a~~nlA~ay~~lGq 892 (1166)
. .+... ...--++.+.++|..++..|.+.+|..+|..|+... .+. ........||+|.++.++++
T Consensus 441 d--------~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 441 D--------ILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred H--------HHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 1 00001 111235677889999999999999999999999862 111 12345678999999999999
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 893 ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 893 ~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
++.|.+.|..++..+|.++++|+++|.+....+...+|...+..++.++..+++++
T Consensus 512 ~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 512 TEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR 567 (1018)
T ss_pred hhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence 99999999999999999999999999888888999999999999999998888876
|
|
| >PRK14296 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-21 Score=221.71 Aligned_cols=149 Identities=24% Similarity=0.307 Sum_probs=104.1
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++. ..|+++|++|++||+||+||.||
T Consensus 4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---------------------~~a~~~F~~i~~AyevLsD~~KR 62 (372)
T PRK14296 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---------------------PDAHDKMVEINEAADVLLDKDKR 62 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------chHHHHHHHHHHHHHHhcCHHHh
Confidence 499999999999999999999999999999999752 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCC-cc---CCchhhhhhhhhcccC---CCCCCCCceEEeeeeeeeccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYP-FE---RSSSRRQWREVRRSYD---NSAARGDIYSISFNLRIASNKRC 1136 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~-f~---~~~~~~~~~~~~~~~~---~~~~rG~~~~~~~~lsf~ea~~G 1136 (1166)
+.||.++.... ..+.+.+ ++..++...|. ++ .+.....|..+|++.. ...++|.++.+.+.|+|+|+++|
T Consensus 63 ~~YD~~G~~~~--~~~~~~~-~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G 139 (372)
T PRK14296 63 KQYDQFGHAAF--DGSSGFS-SNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFG 139 (372)
T ss_pred hhhhhccchhh--cCCCCcC-cCCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCC
Confidence 99999775311 1101100 00000000000 00 0001122344444211 12246889999999999999999
Q ss_pred ccceeeceeeeee-eecceee
Q 039706 1137 YRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1137 ~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
+++.|++.+.+.| +|+|+|.
T Consensus 140 ~~~~i~~~~~~~C~~C~G~G~ 160 (372)
T PRK14296 140 VDKIIELDLLTNCSKCFGSGA 160 (372)
T ss_pred eeEEEEEeeeeccCCCCCCcc
Confidence 9999999888777 7776654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=221.70 Aligned_cols=270 Identities=10% Similarity=-0.020 Sum_probs=228.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
...+|+++|.+++. +++.+|+..+.+++...|+.. .++.+|.++...|++++|+..|++++...|....
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a--------- 544 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNED--------- 544 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHH---------
Confidence 56778899999987 899999999999999999764 4677788888999999999999998776555211
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
.+..+.. ....|++++|+.+|++++...|....++..++..+..+|++++|+..|+++++++|+ .
T Consensus 545 -----------~~~la~a---ll~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~ 609 (987)
T PRK09782 545 -----------LLAAANT---AQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-A 609 (987)
T ss_pred -----------HHHHHHH---HHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-H
Confidence 1111111 224799999999999999999988888887777788889999999999999999884 2
Q ss_pred CCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh
Q 039706 767 PPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG 846 (1166)
Q Consensus 767 ~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG 846 (1166)
.. +..+|.++..+|++++|+..|++++...|. ....+.++|
T Consensus 610 ~a-------------------------~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd--------------~~~a~~nLG 650 (987)
T PRK09782 610 NA-------------------------YVARATIYRQRHNVPAAVSDLRAALELEPN--------------NSNYQAALG 650 (987)
T ss_pred HH-------------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHH
Confidence 21 456889999999999999999998554443 456778889
Q ss_pred HHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
.++...|++++|+.+|++|++++ |.++.+++++|.++..+|++++|+.+|++|++++|+.+.+....|.+.....+
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~----P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGL----PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence 99999999999999999999988 88899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 039706 927 YDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 927 yeeAi~~yekALeL~P~~~ 945 (1166)
++.|.+.|.++..+.|...
T Consensus 727 ~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 727 FRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHhhcCccch
Confidence 9999999999999888765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=208.70 Aligned_cols=274 Identities=14% Similarity=0.118 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
.|.+.++|.+|+.+++|++|..+|+.+-+++|-..+..-....++..+.+--+--..-+..+..+|+.+..|..+
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~----- 427 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCAL----- 427 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHh-----
Confidence 388999999999999999999999999999998888777777888877766555555566777788776655433
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
+.++. -+++++.||.+|++|++++|....+|.++|.-+.....++.|..+|+.||..+|.+-.
T Consensus 428 ---------------GNcfS--LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 428 ---------------GNCFS--LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred ---------------cchhh--hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 22222 2689999999999999999999999999999999999999999999999999887533
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
+ |+-+|.+|.++++++.|.-+|++|+..+|.. ...+..+|.
T Consensus 491 A-------------------------wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--------------svi~~~~g~ 531 (638)
T KOG1126|consen 491 A-------------------------WYGLGTVYLKQEKLEFAEFHFQKAVEINPSN--------------SVILCHIGR 531 (638)
T ss_pred H-------------------------HHhhhhheeccchhhHHHHHHHhhhcCCccc--------------hhHHhhhhH
Confidence 2 5679999999999999999999986655543 334445699
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
.+.+.|+.++|+..|++|+.++ |.++.+.+.+|.++..+++|++|+..+++.-++-|+..-+++.+|.+|..+|+.
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld----~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLD----PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcC----CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHH
Q 039706 928 DHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e 946 (1166)
+.|+..|--|+.++|+..+
T Consensus 608 ~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 608 DLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHhhHHHhcCCCccch
Confidence 9999999999999998755
|
|
| >PRK14288 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-20 Score=219.54 Aligned_cols=143 Identities=29% Similarity=0.436 Sum_probs=102.9
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.+|||+|||++|++||||+++.. ..|+++|++|++||+||+||.||
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~--------------------~~a~~~f~~i~~AYevLsd~~kR 62 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD--------------------KEAEEKFKLINEAYGVLSDEKKR 62 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------cHHHHHHHHHHHHHHHhccHHHH
Confidence 4999999999999999999999999999999998521 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.++.... . .++.+.++ + .++ |+ .....|..+|++.. ...++|.++.+.+.|+|+|+++|++
T Consensus 63 ~~YD~~G~~~~--~-~~~~~~~~---~-~~~-f~--~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~ 132 (369)
T PRK14288 63 ALYDRYGKKGL--N-QAGASQSD---F-SDF-FE--DLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCK 132 (369)
T ss_pred HHHHHhccccc--c-cCCCCccc---c-ccc-hh--hHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeE
Confidence 99999775311 0 00100000 0 000 11 00011222232100 1124688999999999999999999
Q ss_pred ceeeceeeeee-eecceee
Q 039706 1139 PFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1139 K~i~~~~~~~C-~C~G~~q 1156 (1166)
+.|++.+.+.| +|+|+|.
T Consensus 133 ~~i~~~r~~~C~~C~G~G~ 151 (369)
T PRK14288 133 KTIKVQYQSVCESCDGTGA 151 (369)
T ss_pred EEEEEEeeccCCCCCCccc
Confidence 99999988888 7777663
|
|
| >PRK14286 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-20 Score=217.02 Aligned_cols=149 Identities=25% Similarity=0.369 Sum_probs=106.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++. ...|+++|++|++||+||+||.+|
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--------------------~~~a~~~f~~i~~Ay~vL~d~~kR 63 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG--------------------NKESEEKFKEATEAYEILRDPKKR 63 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------------------chHHHHHHHHHHHHHHHhccHHHH
Confidence 499999999999999999999999999999999752 146889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC---------CCCCCCCceEEeeeeeeeccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD---------NSAARGDIYSISFNLRIASNK 1134 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~---------~~~~rG~~~~~~~~lsf~ea~ 1134 (1166)
+.||.++...... +.++.+.++...+. . .|+ .....|..+|++.. ...++|.++.+.+.|+|+|++
T Consensus 64 ~~YD~~G~~g~~~-~~~~~~~~~~~~~~-~-~~~--~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~ 138 (372)
T PRK14286 64 QAYDQFGKAGVNA-GAGGFGQGAYTDFS-D-IFG--DFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAA 138 (372)
T ss_pred HHHHHhCchhhcc-ccCCCCCCCccccc-c-ccc--chhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHh
Confidence 9999977531100 00010000000000 0 011 11123444554211 112468899999999999999
Q ss_pred ccccceeeceeeeee-eecceeee
Q 039706 1135 RCYRPFVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1135 ~G~~K~i~~~~~~~C-~C~G~~q~ 1157 (1166)
+|+++.|++.+.+.| +|+|+|..
T Consensus 139 ~G~~k~i~~~r~~~C~~C~G~G~~ 162 (372)
T PRK14286 139 LGREYKIEIPRLESCVDCNGSGAS 162 (372)
T ss_pred CCeeEEEEeeccccCCCCcCCCcC
Confidence 999999999998888 88877653
|
|
| >PRK14277 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-20 Score=216.44 Aligned_cols=153 Identities=25% Similarity=0.410 Sum_probs=106.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.+|
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~kr 64 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD--------------------KEAEQKFKEINEAYEILSDPQKR 64 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hHHHHHHHHHHHHHHHhCCHHHH
Confidence 4999999999999999999999999999999997521 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCC-CCCCCccCCchhhhhhhhhccc-C-------CCCCCCCceEEeeeeeeeccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAY-AQNYPFERSSSRRQWREVRRSY-D-------NSAARGDIYSISFNLRIASNK 1134 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~-~-------~~~~rG~~~~~~~~lsf~ea~ 1134 (1166)
+.||.++...... ...+.++.+..++ ...+.|..++....|.++|+.+ + ...++|.++.+.+.|+|+|++
T Consensus 65 ~~yD~~G~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~ 143 (386)
T PRK14277 65 AQYDQFGHAAFDP-GGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAA 143 (386)
T ss_pred HHHHhhccccccc-cccccCCcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHh
Confidence 9999977532110 0000100000000 0001111111112244444432 1 112368899999999999999
Q ss_pred ccccceeeceeeeee-eecceeee
Q 039706 1135 RCYRPFVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1135 ~G~~K~i~~~~~~~C-~C~G~~q~ 1157 (1166)
.|+++.|++.+.+.| +|+|+|..
T Consensus 144 ~G~~~~v~~~r~~~C~~C~G~G~~ 167 (386)
T PRK14277 144 FGTEKEIEVERFEKCDVCKGSGAK 167 (386)
T ss_pred CCeEEEEEEEeeccCCCCCCCCcC
Confidence 999999999988888 88876653
|
|
| >PRK14285 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-20 Score=213.68 Aligned_cols=150 Identities=28% Similarity=0.391 Sum_probs=107.2
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.+|
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~kr 62 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN--------------------KEAESIFKEATEAYEVLIDDNKR 62 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--------------------HHHHHHHHHHHHHHHHHcCcchh
Confidence 4899999999999999999999999999999997521 36888999999999999999999
Q ss_pred cccchhhhhhhhhccCCCC-CCCCCCCCCCCCCccCCchhhhhhhhhccc-C----CCCCCCCceEEeeeeeeecccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGS-NTSRTHAYAQNYPFERSSSRRQWREVRRSY-D----NSAARGDIYSISFNLRIASNKRCY 1137 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~----~~~~rG~~~~~~~~lsf~ea~~G~ 1137 (1166)
+.||.++.... ..+++. +..+.. +.....|+ .....|..+|++. + ...++|.++.+.+.|+|+|+++|+
T Consensus 63 ~~yd~~g~~~~--~~~~~~~~~~~g~-~~~~~~~~--~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~ 137 (365)
T PRK14285 63 AQYDRFGHTAF--EGGGGFEGFSGGF-SGFSDIFE--DFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGY 137 (365)
T ss_pred HHHHhcCcchh--ccCCCccccCCCc-cccccccc--cHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCe
Confidence 99999775321 111110 000000 00000011 1112345555431 1 112468899999999999999999
Q ss_pred cceeeceeeeee-eecceeeee
Q 039706 1138 RPFVTIREFMAC-ACQWRYQIV 1158 (1166)
Q Consensus 1138 ~K~i~~~~~~~C-~C~G~~q~~ 1158 (1166)
++.|++.+.+.| +|+|+|...
T Consensus 138 ~~~i~~~r~~~C~~C~G~G~~~ 159 (365)
T PRK14285 138 KNNINITRNMLCESCLGKKSEK 159 (365)
T ss_pred EEEEEeeecccCCCCCCcccCC
Confidence 999999998888 888777543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-18 Score=216.74 Aligned_cols=263 Identities=13% Similarity=-0.047 Sum_probs=217.2
Q ss_pred cCChHH---HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 621 LGRMRD---ALSDCMLAVAIDPD--FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 621 lG~y~e---AI~~fekALeldP~--~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
.|+..+ +...+.+++..+|. +..+|+.+|.|+.. +++++|+..|.+++...|+...
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~------------------ 511 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ------------------ 511 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH------------------
Confidence 455544 45555666666777 99999999999998 8999999999999999987321
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcc
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQS 775 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~ 775 (1166)
.....+.....|++++|+..|++++...|.. ..+..+|.++...|++++|+.+|++++.+.|.....
T Consensus 512 -----~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l------- 578 (987)
T PRK09782 512 -----HRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL------- 578 (987)
T ss_pred -----HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH-------
Confidence 1111222235899999999999988876664 457788999999999999999999999987654211
Q ss_pred cccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 776 MELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 776 l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
+..++..+...|++++|+..|++++...|. ...+..+|.++.+.|++
T Consensus 579 ------------------~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~---------------~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 579 ------------------YWWLHAQRYIPGQPELALNDLTRSLNIAPS---------------ANAYVARATIYRQRHNV 625 (987)
T ss_pred ------------------HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------------HHHHHHHHHHHHHCCCH
Confidence 223455566779999999999998543332 45677889999999999
Q ss_pred HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 856 eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
++|+.+|++++.++ |.++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+
T Consensus 626 deA~~~l~~AL~l~----Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 626 PAAVSDLRAALELE----PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHhhccCC
Q 039706 936 RLIALLTKQIEKSNQSG 952 (1166)
Q Consensus 936 kALeL~P~~~e~~~~~~ 952 (1166)
+++++.|+......+.+
T Consensus 702 ~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 702 LVIDDIDNQALITPLTP 718 (987)
T ss_pred HHHhcCCCCchhhhhhh
Confidence 99999998876554333
|
|
| >PRK14279 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-20 Score=216.03 Aligned_cols=162 Identities=25% Similarity=0.315 Sum_probs=108.3
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++.. +.|+++|++|++||+||+||+||
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vLsD~~KR 68 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD--------------------PAAEERFKAVSEAHDVLSDPAKR 68 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------hHHHHHHHHHHHHHHHhcchhhh
Confidence 4999999999999999999999999999999998521 46889999999999999999999
Q ss_pred cccchhhhhhh--hhccCC--C-CCCCCCCC----CCCCC--CccC-----Cchh-hhhhhhhcccC-----CCCCCCCc
Q 039706 1064 SRYDLEEETRN--TQKKQN--G-SNTSRTHA----YAQNY--PFER-----SSSR-RQWREVRRSYD-----NSAARGDI 1121 (1166)
Q Consensus 1064 ~~YD~~~~~~~--~~~~~~--g-~~~~~~~~----~~~~~--~f~~-----~~~~-~~~~~~~~~~~-----~~~~rG~~ 1121 (1166)
++||.+++... ...... + .+.++... ...++ .|+. .+.+ ..|..+|++.. ...++|.+
T Consensus 69 ~~YD~~G~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~d 148 (392)
T PRK14279 69 KEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGND 148 (392)
T ss_pred hHHHHhhhhccccccccccccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCC
Confidence 99999864211 000000 0 00000000 00010 0110 0000 11222332111 11246889
Q ss_pred eEEeeeeeeecccccccceeeceeeeee-eecceeeeeecccccc
Q 039706 1122 YSISFNLRIASNKRCYRPFVTIREFMAC-ACQWRYQIVESQTEDC 1165 (1166)
Q Consensus 1122 ~~~~~~lsf~ea~~G~~K~i~~~~~~~C-~C~G~~q~~~~~~~~c 1165 (1166)
+.+.+.|+|+|+++|+++.|++.+.+.| +|+|+|...-..+..|
T Consensus 149 i~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C 193 (392)
T PRK14279 149 LETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVC 193 (392)
T ss_pred eEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCC
Confidence 9999999999999999999999988888 8887776544444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-17 Score=191.99 Aligned_cols=285 Identities=13% Similarity=-0.022 Sum_probs=220.2
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF----LRVQVRAANCH 652 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~----~~A~~~LA~ly 652 (1166)
++.|+..+.+++..+|++. .+++.+|.+|...|++++|+..+++++...+.. ..++..+|.+|
T Consensus 51 ~~~A~~~~~~al~~~p~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETV-------------ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred hHHHHHHHHHHHhcCcccH-------------HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4555555555555555433 345668999999999999999999998854322 36789999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH
Q 039706 653 LALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE 732 (1166)
Q Consensus 653 l~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~ 732 (1166)
...|++++|+..|+++++..|.+...+. ..... ....|++++|+..+++++...|...
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~--------------------~la~~--~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQ--------------------QLLEI--YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHH--------------------HHHHH--HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999988776322111 11111 2247999999999999999887642
Q ss_pred -----HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCH
Q 039706 733 -----KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRL 807 (1166)
Q Consensus 733 -----~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~ 807 (1166)
.++..+|.++...+++++|+.+|+++++..|.... .+..+|.+|...|++
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------------------~~~~la~~~~~~g~~ 230 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR-------------------------ASILLGDLALAQGDY 230 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH-------------------------HHHHHHHHHHHCCCH
Confidence 35678999999999999999999999998775422 145689999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHH
Q 039706 808 EEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAY 887 (1166)
Q Consensus 808 eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay 887 (1166)
++|+..++++....+. .....+..++.+|...|++++|+..+++++... |... .+..++.++
T Consensus 231 ~~A~~~~~~~~~~~p~-------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p~~~-~~~~la~~~ 292 (389)
T PRK11788 231 AAAIEALERVEEQDPE-------------YLSEVLPKLMECYQALGDEAEGLEFLRRALEEY----PGAD-LLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHHHChh-------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCch-HHHHHHHHH
Confidence 9999999997543221 112345667899999999999999999999987 5443 348899999
Q ss_pred HHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH--hhCHHHHHHHHHHHHH
Q 039706 888 KALRHITDAIADCNLAIALDGNYLKAISRRATLYEM--IRDYDHAASDFHRLIA 939 (1166)
Q Consensus 888 ~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~--lGdyeeAi~~yekALe 939 (1166)
...|++++|+..++++++..|++...+..++..+.. .|+..+|+..+++.++
T Consensus 293 ~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999999999999999999999988665444443322 4588888888887775
|
|
| >PRK14282 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-20 Score=213.10 Aligned_cols=152 Identities=26% Similarity=0.382 Sum_probs=104.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++.. ...|+++|++|++||+||+||.+|
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------------------~~~a~~~f~~i~~Ay~vL~d~~kR 64 (369)
T PRK14282 4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN-------------------RKEAEQKFKEIQEAYEVLSDPQKR 64 (369)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc-------------------hhHHHHHHHHHHHHHHHhcChhhH
Confidence 4999999999999999999999999999999997521 135889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCC-CccCCchhhhhhhhhcccC------CCCCCCCceEEeeeeeeeccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNY-PFERSSSRRQWREVRRSYD------NSAARGDIYSISFNLRIASNKRC 1136 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~------~~~~rG~~~~~~~~lsf~ea~~G 1136 (1166)
+.||.++........ .++++.+.. +...| .|+.......|..+|++.. ...++|.++.+.+.|+|+|+++|
T Consensus 65 ~~YD~~g~~~~~~~~-~~~~~~g~~-~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G 142 (369)
T PRK14282 65 AMYDRFGYVGEQPPY-QETESGGGF-FEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLING 142 (369)
T ss_pred HHHhhcCcccccccc-ccCCCCCcc-cccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCC
Confidence 999997653111000 000000000 00000 0110000122444444321 11246889999999999999999
Q ss_pred ccceeeceeeeee-eecceee
Q 039706 1137 YRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1137 ~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
+++.|++.+.+.| +|+|+|.
T Consensus 143 ~~~~i~~~r~~~C~~C~G~G~ 163 (369)
T PRK14282 143 AEIPVEYDRYETCPHCGGTGV 163 (369)
T ss_pred eEEEEEeeecccCCCCCccCC
Confidence 9999999988777 7776653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-17 Score=198.70 Aligned_cols=300 Identities=14% Similarity=0.117 Sum_probs=228.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
...|..++..|++++|+..|..+|+++|.+..+|+.||.||.++|+.++|+..+-.|-.++|.++..|..+.+..
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls----- 217 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS----- 217 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH-----
Confidence 446888888999999999999999999999999999999999999999999999999999999876665554432
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
..+|.+.+|+-+|.+||+..|.+....+.++.+|.++|++..|+..+.+++.+.|... +..
T Consensus 218 -----------------~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d--~er 278 (895)
T KOG2076|consen 218 -----------------EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD--IER 278 (895)
T ss_pred -----------------HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh--HHH
Confidence 2368899999999999999999999999999999999999999999999999988211 110
Q ss_pred cCccc---------ccCccchhhhhh---------hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--------
Q 039706 772 NGQSM---------ELDSSESTKHVS---------FRLWRCCLIFKSYFTLGRLEEAIAALERHES----GN-------- 821 (1166)
Q Consensus 772 ~g~~l---------~ld~~~~~~~~~---------~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~----~~-------- 821 (1166)
.-.++ ..+.....+.+. ...--+..++.+|+....++.|+..+..... .+
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 00000 000000000000 0011134567777888888888877765322 00
Q ss_pred ------------CCc---hhhh---hhh---h---------------c--cchHHHHHHhhhhHHHHHcCChHHHHHHHH
Q 039706 822 ------------GGK---MLES---LIP---L---------------A--GTVRELLCRKSAGNEAFQAGRHSEAVEHYT 863 (1166)
Q Consensus 822 ------------~~k---~le~---a~~---L---------------~--~~~~~a~~l~~lG~~~~~~G~yeEAie~y~ 863 (1166)
+.. .+.. ++- + . ........++.++.+|...|+|.+|+.+|.
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 000 0000 000 0 0 012335677889999999999999999999
Q ss_pred HHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 864 AALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 864 kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
.++...+ -.++.+|+.+|.||..+|.+++|++.|+++|.+.|++.++...|+.+|..+|+.++|++.++...
T Consensus 439 ~i~~~~~---~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 439 PITNREG---YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhcCcc---ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9987652 23478999999999999999999999999999999999999999999999999999999999877
|
|
| >PRK14276 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-19 Score=212.23 Aligned_cols=148 Identities=25% Similarity=0.327 Sum_probs=104.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.||
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~a~~~f~~i~~Ay~vL~d~~kR 62 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE---------------------PGAEEKYKEVQEAYETLSDPQKR 62 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------cCHHHHHHHHHHHHHHhcCHhhh
Confidence 499999999999999999999999999999999752 35788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.++.... ..+.+++.++...+.....|+ .....|..+|++.+ ...++|.++.+.+.|+|+|+++|++
T Consensus 63 ~~YD~~G~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~ 138 (380)
T PRK14276 63 AAYDQYGAAGA--NGGFGGGAGGFGGFDGSGGFG--GFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKE 138 (380)
T ss_pred hhHhhcCCccc--cCCCCCCCCCCCCcccccccc--chhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeE
Confidence 99999775311 000000000000000000011 11123455554211 1124688999999999999999999
Q ss_pred ceeeceeeeee-eecceee
Q 039706 1139 PFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1139 K~i~~~~~~~C-~C~G~~q 1156 (1166)
+.|++.+.+.| +|+|+|.
T Consensus 139 ~~i~~~~~~~C~~C~G~G~ 157 (380)
T PRK14276 139 KEVSYNREATCHTCNGSGA 157 (380)
T ss_pred EEEEeeccccCCCCcCccc
Confidence 99999988777 7776654
|
|
| >PRK14287 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-19 Score=211.46 Aligned_cols=140 Identities=28% Similarity=0.396 Sum_probs=103.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++. ..|+++|++|++||+||+||.||
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~~~~~f~~i~~Ay~~L~d~~kR 62 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA---------------------PDAEDKFKEVKEAYDTLSDPQKK 62 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHHhCcHhHH
Confidence 499999999999999999999999999999999751 36888999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.++..... . +.++++. .. |+ +....|..+|++.. ...++|.++.+.+.|+|+|+++|++
T Consensus 63 ~~YD~~G~~~~~--~--~~~~~~~----~~--f~--~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~ 130 (371)
T PRK14287 63 AHYDQFGHTDPN--Q--GFGGGGA----GD--FG--GFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKE 130 (371)
T ss_pred HHHHhhCCcccc--c--ccCCCCC----cc--cc--chHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeE
Confidence 999997753110 0 1000000 00 11 11122444444211 1124688999999999999999999
Q ss_pred ceeeceeeeee-eecceee
Q 039706 1139 PFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1139 K~i~~~~~~~C-~C~G~~q 1156 (1166)
+.|++.+.+.| +|+|+|.
T Consensus 131 ~~i~~~r~~~C~~C~G~G~ 149 (371)
T PRK14287 131 TEIEIPREETCGTCHGSGA 149 (371)
T ss_pred EEEEEeeeccCCCCCCccc
Confidence 99999988777 7776653
|
|
| >KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-19 Score=203.53 Aligned_cols=137 Identities=31% Similarity=0.394 Sum_probs=106.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
..||.+|+|.++|+.+|||+|||+||++|||||++ .|.++|++|.+||+|||||+||
T Consensus 4 ~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~-----------------------~~~ekfkei~~AyevLsd~ekr 60 (337)
T KOG0712|consen 4 TKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNP-----------------------DAGEKFKEISQAYEVLSDPEKR 60 (337)
T ss_pred cccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCc-----------------------cHHHHHHHHHHHHHHhcCHHHH
Confidence 47999999999999999999999999999999996 4788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc-CCCCCCCCceEEeeeeeeecccccccceee
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY-DNSAARGDIYSISFNLRIASNKRCYRPFVT 1142 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~rG~~~~~~~~lsf~ea~~G~~K~i~ 1142 (1166)
+.||.+++... +.++.|+++++ | ..|.+ |+++ ..+..||.++...+.|+++|...|.++.+.
T Consensus 61 ~~yD~~g~~~~-~~g~~~~g~~~---------f------~~~F~-~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~ 123 (337)
T KOG0712|consen 61 EIYDQYGEEGL-QGGGGGGGFGG---------F------SQFFG-FGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLF 123 (337)
T ss_pred HHHHhhhhhhh-cccCCCCCCcc---------H------HHhcc-CCCcCccccccCCCceEEEEEEHHHhhcCCcccee
Confidence 99999986432 21111111111 1 11111 2222 223445899999999999999999999999
Q ss_pred ceeeeee-eecceeeeeec
Q 039706 1143 IREFMAC-ACQWRYQIVES 1160 (1166)
Q Consensus 1143 ~~~~~~C-~C~G~~q~~~~ 1160 (1166)
+.....| .|+|+|-.-..
T Consensus 124 l~~~~iCs~C~GsGgksg~ 142 (337)
T KOG0712|consen 124 LSRNFICSKCSGSGGKSGS 142 (337)
T ss_pred cccCccCCcCCCCCCCCCC
Confidence 9999999 99988764433
|
|
| >PRK14297 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-19 Score=210.54 Aligned_cols=147 Identities=28% Similarity=0.407 Sum_probs=104.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++. ...|+++|++|++||+||+||.+|
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--------------------~~~a~~~f~~i~~Ay~vL~d~~~r 63 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG--------------------NKEAEEKFKEINEAYQVLSDPQKK 63 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------------------cHHHHHHHHHHHHHHHHhcCHhhh
Confidence 499999999999999999999999999999999752 146889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccC-Cchhhhhhhhhccc-C------CCCCCCCceEEeeeeeeecccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFER-SSSRRQWREVRRSY-D------NSAARGDIYSISFNLRIASNKR 1135 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~-~------~~~~rG~~~~~~~~lsf~ea~~ 1135 (1166)
+.||.++..... .+++.+.++. ..+.+.. +.....|..+|++. + ...++|.++.+.+.|+|+|++.
T Consensus 64 ~~yD~~G~~~~~--~~~~~~~~~~----~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~ 137 (380)
T PRK14297 64 AQYDQFGTADFN--GAGGFGSGGF----GGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVF 137 (380)
T ss_pred CchhhcCccccc--ccCCCCCCCC----CCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcC
Confidence 999997753110 0011000010 0111110 01112344455421 0 1124688999999999999999
Q ss_pred cccceeeceeeeee-eecceee
Q 039706 1136 CYRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1136 G~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
|+++.|++.+.+.| +|+|+|.
T Consensus 138 G~~~~i~~~r~~~C~~C~G~G~ 159 (380)
T PRK14297 138 GVEKEISVTRNENCETCNGTGA 159 (380)
T ss_pred CeEEEEEeeeeccCCCcccccc
Confidence 99999999887777 6666553
|
|
| >PRK14284 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-19 Score=211.57 Aligned_cols=155 Identities=27% Similarity=0.403 Sum_probs=106.2
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhc
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRS 1064 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~ 1064 (1166)
+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.||+
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~kR~ 61 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD--------------------AEAEKRFKEVSEAYEVLSDAQKRE 61 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------hHHHHHHHHHHHHHHHhcCHHHHH
Confidence 899999999999999999999999999999998621 468899999999999999999999
Q ss_pred ccchhhhhhhhhccCCCCCCCCCCC--CC-CCC--CccC--CchhhhhhhhhcccC---------CCCCCCCceEEeeee
Q 039706 1065 RYDLEEETRNTQKKQNGSNTSRTHA--YA-QNY--PFER--SSSRRQWREVRRSYD---------NSAARGDIYSISFNL 1128 (1166)
Q Consensus 1065 ~YD~~~~~~~~~~~~~g~~~~~~~~--~~-~~~--~f~~--~~~~~~~~~~~~~~~---------~~~~rG~~~~~~~~l 1128 (1166)
.||.++...... +.++.++++... +. ..| .|+. +.....|..+|++.+ ...++|.++.+.+.|
T Consensus 62 ~YD~~G~~g~~~-g~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~v 140 (391)
T PRK14284 62 SYDRYGKDGPFA-GAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITL 140 (391)
T ss_pred HHHhcccccccc-ccCCcCCCCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEE
Confidence 999987531100 000000001000 00 000 0110 000122333443211 112467899999999
Q ss_pred eeecccccccceeeceeeeee-eecceeeeeec
Q 039706 1129 RIASNKRCYRPFVTIREFMAC-ACQWRYQIVES 1160 (1166)
Q Consensus 1129 sf~ea~~G~~K~i~~~~~~~C-~C~G~~q~~~~ 1160 (1166)
+|+|+++|+++.|++.+.+.| +|+|+|...-.
T Consensus 141 slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 173 (391)
T PRK14284 141 SFEEAAKGVEKELLVSGYKSCDACSGSGANSSQ 173 (391)
T ss_pred EHHHHhCCeeEEEEEeeeccCCCCcccccCCCC
Confidence 999999999999999988888 78777654333
|
|
| >PTZ00037 DnaJ_C chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=212.24 Aligned_cols=132 Identities=27% Similarity=0.413 Sum_probs=100.6
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||++|||+++|+.+|||+|||++|++|||||++ .+++|++|++||+||+||.|
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~------------------------~~e~F~~i~~AYevLsD~~k 82 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG------------------------DPEKFKEISRAYEVLSDPEK 82 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc------------------------hHHHHHHHHHHHHHhccHHH
Confidence 359999999999999999999999999999999974 13689999999999999999
Q ss_pred hcccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC--CCCCCCCceEEeeeeeeecccccccce
Q 039706 1063 RSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD--NSAARGDIYSISFNLRIASNKRCYRPF 1140 (1166)
Q Consensus 1063 R~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~--~~~~rG~~~~~~~~lsf~ea~~G~~K~ 1140 (1166)
|+.||.++.... . ++..+. + ....|..+|++.. ...++|.++.+.+.|+|+|+++|+++.
T Consensus 83 R~~YD~~G~~~~--~---~~~~~~---d----------~~d~f~~~Fggg~~~~~~~rg~di~~~l~vtLee~~~G~~~~ 144 (421)
T PTZ00037 83 RKIYDEYGEEGL--E---GGEQPA---D----------ASDLFDLIFGGGRKPGGKKRGEDIVSHLKVTLEQIYNGAMRK 144 (421)
T ss_pred HHHHhhhcchhc--c---cCCCCc---c----------hhhhHHHhhccccccccccCCCCEEEEeeeeHHHHhCCCceE
Confidence 999999765211 0 000000 0 0112333333211 223568999999999999999999999
Q ss_pred eeceeeeee-eecceee
Q 039706 1141 VTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1141 i~~~~~~~C-~C~G~~q 1156 (1166)
|++...+.| +|+|+|.
T Consensus 145 i~~~r~~~C~~C~G~G~ 161 (421)
T PTZ00037 145 LAINKDVICANCEGHGG 161 (421)
T ss_pred EEeeccccccccCCCCC
Confidence 999988888 7777663
|
|
| >PRK14278 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-19 Score=208.83 Aligned_cols=140 Identities=29% Similarity=0.375 Sum_probs=103.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~---------------------~~a~~~f~~i~~Ay~vL~d~~~r 61 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD---------------------EEAQEKFKEISVAYEVLSDPEKR 61 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc---------------------HHHHHHHHHHHHHHHHhchhhhh
Confidence 489999999999999999999999999999999852 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC------CCCCCCCceEEeeeeeeecccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD------NSAARGDIYSISFNLRIASNKRCY 1137 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~------~~~~rG~~~~~~~~lsf~ea~~G~ 1137 (1166)
+.||.++.... . ++++.++. .. .|+ +....|..+|++.+ ...++|.++.+.+.|+|+|+++|+
T Consensus 62 ~~YD~~G~~~~---~-~~~~~~g~---~~--~f~--~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~ 130 (378)
T PRK14278 62 RIVDLGGDPLE---S-AGGGGGGF---GG--GFG--GLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGV 130 (378)
T ss_pred hhhhccCCccc---c-ccCCCCCC---Cc--CcC--chhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCe
Confidence 99999765211 0 01000000 00 111 11123445554321 012368899999999999999999
Q ss_pred cceeeceeeeee-eeccee
Q 039706 1138 RPFVTIREFMAC-ACQWRY 1155 (1166)
Q Consensus 1138 ~K~i~~~~~~~C-~C~G~~ 1155 (1166)
++.|++...+.| +|+|+|
T Consensus 131 ~~~i~~~~~~~C~~C~G~G 149 (378)
T PRK14278 131 TKQVTVDTAVLCDRCHGKG 149 (378)
T ss_pred EEEEEEEeeccCCCCcCcc
Confidence 999999988777 776655
|
|
| >PRK14280 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-19 Score=208.79 Aligned_cols=145 Identities=27% Similarity=0.381 Sum_probs=104.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~a~~~f~~i~~Ay~vL~d~~kr 62 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE---------------------EGADEKFKEISEAYEVLSDDQKR 62 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHhccHhHH
Confidence 499999999999999999999999999999999752 35889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.++..... .+.+.++.+...+...|.|+ ..|..+|++.+ ...++|.++.+.+.|+|+|+++|++
T Consensus 63 ~~yD~~G~~~~~--~~~~~~~~~~~~~~~~~~~~-----d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~ 135 (376)
T PRK14280 63 AQYDQFGHAGPN--QGFGGGGFGGGDFGGGFGFE-----DIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKE 135 (376)
T ss_pred HHHHhcCccccc--cCcCCCCCCCCCccccccch-----hhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCce
Confidence 999997753110 00000000000000001111 23444554211 1124688999999999999999999
Q ss_pred ceeeceeeeee-eecceee
Q 039706 1139 PFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1139 K~i~~~~~~~C-~C~G~~q 1156 (1166)
+.|++.+.+.| +|+|+|.
T Consensus 136 ~~i~~~r~~~C~~C~G~G~ 154 (376)
T PRK14280 136 KEIEIPKEETCDTCHGSGA 154 (376)
T ss_pred eEEEEeeeccCCCCCCccc
Confidence 99999998888 7877664
|
|
| >PRK14298 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-19 Score=208.27 Aligned_cols=143 Identities=29% Similarity=0.382 Sum_probs=103.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~vL~d~~kR 63 (377)
T PRK14298 5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---------------------PDAEEKFKEISEAYAVLSDAEKR 63 (377)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---------------------hhHHHHHHHHHHHHHHhcchHhh
Confidence 499999999999999999999999999999999752 35788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC----CCCCCCCceEEeeeeeeecccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD----NSAARGDIYSISFNLRIASNKRCYRP 1139 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~----~~~~rG~~~~~~~~lsf~ea~~G~~K 1139 (1166)
+.||.++.... .. +.++.+.... . .|+ +....|..+|++.. ...++|.++.+.+.|+|+|+++|+++
T Consensus 64 ~~YD~~G~~g~--~~--~~~~~~~~~~-~--~~~--~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~ 134 (377)
T PRK14298 64 AQYDRFGHAGI--DN--QYSAEDIFRG-A--DFG--GFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRK 134 (377)
T ss_pred hhhhhcCcccc--cc--ccCccccccc-C--CcC--cchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEE
Confidence 99999775211 00 0000000000 0 011 00122444444211 12346889999999999999999999
Q ss_pred eeeceeeeee-eecceee
Q 039706 1140 FVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1140 ~i~~~~~~~C-~C~G~~q 1156 (1166)
.|++...+.| +|+|+|.
T Consensus 135 ~i~~~r~~~C~~C~G~G~ 152 (377)
T PRK14298 135 DIDVPRAERCSTCSGTGA 152 (377)
T ss_pred EEEEEeeccCCCCCCCcc
Confidence 9999988877 7776654
|
|
| >PRK14301 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-19 Score=207.59 Aligned_cols=146 Identities=27% Similarity=0.380 Sum_probs=104.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.+|
T Consensus 4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~kr 63 (373)
T PRK14301 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN--------------------PEAEQKFKEAAEAYEVLRDAEKR 63 (373)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC--------------------hHHHHHHHHHHHHHHHhcchhhh
Confidence 4999999999999999999999999999999997521 36888999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhc--cc----CCCCCCCCceEEeeeeeeecccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRR--SY----DNSAARGDIYSISFNLRIASNKRCY 1137 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~--~~----~~~~~rG~~~~~~~~lsf~ea~~G~ 1137 (1166)
+.||.++.... . +++ ++++.. +..+ .|+ .....|..+|+ +. .....+|.++.+.+.|+|+|++.|+
T Consensus 64 ~~yD~~g~~g~--~-~~~-~~~g~~-~~~~-~~~--~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~ 135 (373)
T PRK14301 64 ARYDRFGHAGV--N-GNG-GFGGFS-SAED-IFS--HFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGD 135 (373)
T ss_pred hhhhhcccccc--c-cCC-CCCCcc-cccc-ccc--chHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCc
Confidence 99999775311 0 001 001110 0000 111 00112233332 10 1122468899999999999999999
Q ss_pred cceeeceeeeee-eecceeee
Q 039706 1138 RPFVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1138 ~K~i~~~~~~~C-~C~G~~q~ 1157 (1166)
++.|++.+.+.| +|+|+|..
T Consensus 136 ~k~i~~~r~~~C~~C~G~G~~ 156 (373)
T PRK14301 136 EVTLRIPKNVTCDDCGGSGAA 156 (373)
T ss_pred eEEEEeeecccCCCCCCcccC
Confidence 999999888887 77776653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.6e-17 Score=196.26 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF-LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~-~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
...+|++|.+|..+|+|++|..+|.++++.+|++ .-+++.+|..|+..|+++.|..+|+++++..|++.....++.-++
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 3458999999999999999999999999999998 889999999999999999999999999999999998888887777
Q ss_pred HHh
Q 039706 687 DGL 689 (1166)
Q Consensus 687 ~~L 689 (1166)
...
T Consensus 387 a~~ 389 (1018)
T KOG2002|consen 387 AHS 389 (1018)
T ss_pred Hhh
Confidence 666
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=179.71 Aligned_cols=285 Identities=12% Similarity=0.089 Sum_probs=235.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAI-DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALel-dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
-++.++..+.+.++|+..+++.+.. -|.+...-...|.++..+.++++|+..|+.+++.+|-...+...+..++-....
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 3567777888999999999999988 789988889999999999999999999999999999766665555554433333
Q ss_pred HHhHHHHHHHHHHHHH------------hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 692 AQKVSECMQRSAQLLQ------------NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~------------~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
..++.-+.......-. +...++.++|+.+|++||+++|....+|.++|.-|..+.+...|+..|++|+
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 2222211111111000 1236789999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHH
Q 039706 760 HFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVREL 839 (1166)
Q Consensus 760 el~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a 839 (1166)
+++|.+..+ |+-||++|..++.+.=|+-+|++|....| .+.
T Consensus 392 di~p~DyRA-------------------------WYGLGQaYeim~Mh~YaLyYfqkA~~~kP--------------nDs 432 (559)
T KOG1155|consen 392 DINPRDYRA-------------------------WYGLGQAYEIMKMHFYALYYFQKALELKP--------------NDS 432 (559)
T ss_pred hcCchhHHH-------------------------HhhhhHHHHHhcchHHHHHHHHHHHhcCC--------------Cch
Confidence 999976443 46699999999999999999999854333 345
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-------hCCChHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA-------LDGNYLK 912 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe-------ldP~~~~ 912 (1166)
..|..+|++|.+.++.++|+.+|.+|+... ..+..++..+|.+|.+++++.+|..+|++.++ .+|.-.+
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~----dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLG----DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 567778999999999999999999999887 66778999999999999999999999999998 5677788
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
+..-||.-+.+.++|++|-.+..+++.-
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999999999999998888755
|
|
| >PRK14295 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-19 Score=207.81 Aligned_cols=158 Identities=25% Similarity=0.302 Sum_probs=105.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.+|
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~~r 68 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD--------------------AKAEERFKEISEAYDVLSDEKKR 68 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hhHHHHHHHHHHHHHHHCchhhH
Confidence 4999999999999999999999999999999997521 36889999999999999999999
Q ss_pred cccch----hhhhhhhhccCCCCCCCCCCCCCCCCCccC------Cchh-hhhhhhhccc-C-----CCCCCCCceEEee
Q 039706 1064 SRYDL----EEETRNTQKKQNGSNTSRTHAYAQNYPFER------SSSR-RQWREVRRSY-D-----NSAARGDIYSISF 1126 (1166)
Q Consensus 1064 ~~YD~----~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~------~~~~-~~~~~~~~~~-~-----~~~~rG~~~~~~~ 1126 (1166)
+.||. ++.... ....+++++++...+..+ .|+. .++. ..|.++|+.+ + ...++|.++.+.+
T Consensus 69 ~~yD~~~~~~G~~g~-~~~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l 146 (389)
T PRK14295 69 KEYDEARSLFGNGGF-RPGPGGGGGGGFNFDLGD-LFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEV 146 (389)
T ss_pred HHHHHHHhhhccccc-ccCCCCCCCCCCCccccc-ccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEE
Confidence 99998 443211 000000000000000000 0110 0000 0122333321 1 1224688999999
Q ss_pred eeeeecccccccceeeceeeeee-eecceeeeeecccc
Q 039706 1127 NLRIASNKRCYRPFVTIREFMAC-ACQWRYQIVESQTE 1163 (1166)
Q Consensus 1127 ~lsf~ea~~G~~K~i~~~~~~~C-~C~G~~q~~~~~~~ 1163 (1166)
.|+|+|++.|+++.|++.+.+.| +|+|+|...-..+.
T Consensus 147 ~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 184 (389)
T PRK14295 147 TLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPR 184 (389)
T ss_pred EEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCc
Confidence 99999999999999999988888 77777654433333
|
|
| >PRK14291 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-19 Score=206.45 Aligned_cols=146 Identities=25% Similarity=0.395 Sum_probs=102.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~vLsd~~kR 61 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---------------------PEAEEKFKEINEAYQVLSDPEKR 61 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------ccHHHHHHHHHHHHHHhcCHHHH
Confidence 499999999999999999999999999999999852 36788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhh---------ccc----C-----CCCCCCCceEEe
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVR---------RSY----D-----NSAARGDIYSIS 1125 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~---------~~~----~-----~~~~rG~~~~~~ 1125 (1166)
+.||.++..... .. +....+...+ ..+.+. .....|.++| ++. . ....+|.++.+.
T Consensus 62 ~~YD~~g~~~~~--~~-~~~~~~~~~~-~~~~~~--~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~ 135 (382)
T PRK14291 62 KLYDQFGHAAFS--GS-GQQQQGQEGF-SDFGGG--NIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQT 135 (382)
T ss_pred HHHhhhcccccc--cc-cCcccccccc-ccccCC--CHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEE
Confidence 999997753211 00 0000000000 001000 0111122221 110 0 012257899999
Q ss_pred eeeeeecccccccceeeceeeeee-eecceee
Q 039706 1126 FNLRIASNKRCYRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1126 ~~lsf~ea~~G~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
+.|+|+|+++|+++.|++.+.+.| +|+|+|.
T Consensus 136 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~ 167 (382)
T PRK14291 136 VEISLEEAYTGTTVSLEVPRYVPCEACGGTGY 167 (382)
T ss_pred EEEEHHHhhCCEEEEEEEeeeccCCCCccccC
Confidence 999999999999999999988888 7877664
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-16 Score=175.53 Aligned_cols=284 Identities=16% Similarity=0.168 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CchhHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGS--DVCVDQKIAVE 684 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P--~n~~a~~~l~E 684 (1166)
+.+.+|..|.++...|....|+..|..++...|-++.||..|+.+..... .......--| ..+.....+..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e-------~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE-------ILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH-------HHHHHHhcCcccchHHHHHHHHH
Confidence 35778999999999999999999999999999999999999988764321 1111111112 11111122222
Q ss_pred HHHHhhhH-------HhHHHH------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHH--------------
Q 039706 685 ASDGLQKA-------QKVSEC------MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEM-------------- 737 (1166)
Q Consensus 685 a~~~L~k~-------~~~~e~------~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~-------------- 737 (1166)
++..+... ...... +.....+...+.+.++++|+..|+.+++.+|...+-.-.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 22222211 111110 111122222456889999999999999999864322222
Q ss_pred --------------------HHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHH
Q 039706 738 --------------------KAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLI 797 (1166)
Q Consensus 738 --------------------lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lL 797 (1166)
+|..|...++.++|+.+|+++|+++|....+ |.++
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a-------------------------WTLm 370 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSA-------------------------WTLM 370 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHH-------------------------HHHh
Confidence 2333444556677777777777777754332 3557
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhH
Q 039706 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA 877 (1166)
Q Consensus 798 A~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a 877 (1166)
|.-|..+.+...|+..|++|++ ..+.+-.+|+.+|++|--.+-..=|+-+|++|+++- |.+.
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvd--------------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k----PnDs 432 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVD--------------INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK----PNDS 432 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHh--------------cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC----CCch
Confidence 7777777777777777777633 334455667777777777777777777777777766 7777
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.+|..+|.||.++++.++|+.+|.+|+........++..+|.+|..++++.+|..+|++.++.
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777667777777777777777777777777777764
|
|
| >PRK10767 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=203.98 Aligned_cols=146 Identities=29% Similarity=0.416 Sum_probs=104.2
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++.. ..|+++|++|++||++|+||.+|
T Consensus 4 ~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~~L~d~~~r 63 (371)
T PRK10767 4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD--------------------KEAEEKFKEIKEAYEVLSDPQKR 63 (371)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------HHHHHHHHHHHHHHHHhcchhhh
Confidence 4999999999999999999999999999999997521 35889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc----CCCCCCCCceEEeeeeeeecccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY----DNSAARGDIYSISFNLRIASNKRCYRP 1139 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~rG~~~~~~~~lsf~ea~~G~~K 1139 (1166)
+.||.++..... .+.+.+ +..+. . .|.. .....|..+|++. ....++|.++.+.+.|+|+|+++|+++
T Consensus 64 ~~yd~~g~~~~~--~~~~~~--~~~~~-~--~~~~-~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~ 135 (371)
T PRK10767 64 AAYDQYGHAAFE--QGGGGG--GFGGG-G--GFGD-IFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTK 135 (371)
T ss_pred hHhhhccccccc--cCCCCC--CCCCc-c--cccc-chhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeE
Confidence 999997653110 000000 00000 0 0110 0001122333220 011246889999999999999999999
Q ss_pred eeeceeeeee-eecceeee
Q 039706 1140 FVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1140 ~i~~~~~~~C-~C~G~~q~ 1157 (1166)
.|.+...+.| +|+|+|..
T Consensus 136 ~v~~~r~~~C~~C~G~G~~ 154 (371)
T PRK10767 136 EIRIPTLVTCDTCHGSGAK 154 (371)
T ss_pred EEeeeecccCCCCCCcccC
Confidence 9999998888 88877653
|
|
| >PRK14294 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=203.30 Aligned_cols=145 Identities=30% Similarity=0.399 Sum_probs=103.8
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.+|
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~~~~~f~~~~~Ay~vL~d~~~r 63 (366)
T PRK14294 4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD--------------------KEAEELFKEAAEAYEVLSDPKKR 63 (366)
T ss_pred CChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------hHHHHHHHHHHHHHHHhccHHHH
Confidence 4999999999999999999999999999999997521 36888999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhc-c-cC-----CCCCCCCceEEeeeeeeeccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRR-S-YD-----NSAARGDIYSISFNLRIASNKRC 1136 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~-~~-----~~~~rG~~~~~~~~lsf~ea~~G 1136 (1166)
+.||.++.... . +++.++.+. +. + .|+ .....|.++|+ + .. ...++|.++.+.+.|+|+|+++|
T Consensus 64 ~~yD~~G~~g~--~-~~~~~~~~~--~~-~-~~~--~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G 134 (366)
T PRK14294 64 GIYDQYGHEGL--S-GTGFSGFSG--FD-D-IFS--SFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFG 134 (366)
T ss_pred HHHHhhccccc--c-CCCCCCcCc--cc-c-chh--hhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCC
Confidence 99999875311 0 011100000 00 0 011 00112344443 1 10 11245889999999999999999
Q ss_pred ccceeeceeeeee-eecceeee
Q 039706 1137 YRPFVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1137 ~~K~i~~~~~~~C-~C~G~~q~ 1157 (1166)
+++.|++...+.| +|+|+|..
T Consensus 135 ~~~~i~~~r~~~C~~C~G~G~~ 156 (366)
T PRK14294 135 TEKEIRIQKLETCEECHGSGCE 156 (366)
T ss_pred eEEEEEeeecccCCCCCCcccc
Confidence 9999999888777 77766543
|
|
| >PRK14281 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-18 Score=203.38 Aligned_cols=148 Identities=28% Similarity=0.405 Sum_probs=103.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||++|+||.+|
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~~r 62 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN--------------------KEAEEHFKEVNEAYEVLSNDDKR 62 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hHHHHHHHHHHHHHHHhhhhhhh
Confidence 4899999999999999999999999999999997521 36888999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc---------------CC--------CCCCCC
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY---------------DN--------SAARGD 1120 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~---------------~~--------~~~rG~ 1120 (1166)
+.||.++..........+.+ ++.... .+.|. ..+..|..+|++. +. ...+|.
T Consensus 63 ~~yD~~g~~~~~~~~~~~~~-~~~~~~--~~~~~--d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 137 (397)
T PRK14281 63 RRYDQFGHAGVGSSAASGGG-PGYGGG--GGDFN--DIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGT 137 (397)
T ss_pred hhhhhccchhhccccccCCC-CCCCcC--CCCHH--HHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCC
Confidence 99999765321100000000 000000 00010 0011122333210 00 013578
Q ss_pred ceEEeeeeeeecccccccceeeceeeeee-eecceee
Q 039706 1121 IYSISFNLRIASNKRCYRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1121 ~~~~~~~lsf~ea~~G~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
++.+.+.|+|+|+++|+++.|++.+.+.| +|+|+|.
T Consensus 138 di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~ 174 (397)
T PRK14281 138 DLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGS 174 (397)
T ss_pred CEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCccc
Confidence 99999999999999999999999998888 8887664
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=193.43 Aligned_cols=259 Identities=11% Similarity=0.015 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHcCCCch
Q 039706 609 WRLSNRAATRMAL---GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG---------EIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 609 ~ay~nrA~ayl~l---G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG---------d~eeAl~~fekALel~P~n~ 676 (1166)
+.+|.+|..++.. +.+++|+..|++|++++|++..+|..+|.+|..++ ++++|+..++++++++|++.
T Consensus 259 ~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~ 338 (553)
T PRK12370 259 TMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP 338 (553)
T ss_pred HHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH
Confidence 4467777766544 35789999999999999999999999999987553 36777777777777777754
Q ss_pred hHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHH
Q 039706 677 VDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCE 756 (1166)
Q Consensus 677 ~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~le 756 (1166)
..+..+ +.+ +...|++++|+.+|+++++++|.++.+++.+|.+|..+|++++|+..++
T Consensus 339 ~a~~~l--------------------g~~--~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 339 QALGLL--------------------GLI--NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHH--------------------HHH--HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 332211 111 1135677777777777777777777777777777777777777777777
Q ss_pred HHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV 836 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~ 836 (1166)
++++++|.+... +..++.+++..|++++|+..+++++... .+
T Consensus 397 ~Al~l~P~~~~~-------------------------~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------------~p 438 (553)
T PRK12370 397 ECLKLDPTRAAA-------------------------GITKLWITYYHTGIDDAIRLGDELRSQH-------------LQ 438 (553)
T ss_pred HHHhcCCCChhh-------------------------HHHHHHHHHhccCHHHHHHHHHHHHHhc-------------cc
Confidence 777777754321 1112333444555666666555542211 01
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
.....+..+|.++...|++++|+..+.+++... |....++..++..|..+|+ +|...+++.++..-....-...
T Consensus 439 ~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~ 512 (553)
T PRK12370 439 DNPILLSMQVMFLSLKGKHELARKLTKEISTQE----ITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL 512 (553)
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc----chhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH
Confidence 112233444555555555555555555554433 4444455555555555552 4444444444332221111222
Q ss_pred HHHHHHHhhCHHHHHHH
Q 039706 917 RATLYEMIRDYDHAASD 933 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~ 933 (1166)
.+.+|.-.|+-+.|..+
T Consensus 513 ~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 513 LPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHHHHHhhhHHHHHH
Confidence 44455555555544444
|
|
| >PRK14283 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-18 Score=202.82 Aligned_cols=150 Identities=25% Similarity=0.357 Sum_probs=103.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||.++|+.+|||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~a~~~f~~i~~Ay~~Lsd~~kR 63 (378)
T PRK14283 5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---------------------EGAEEKFKEISEAYAVLSDDEKR 63 (378)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHhchhHHH
Confidence 499999999999999999999999999999999752 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCC-CccCCchhhhhhhh-hcccC-CCCCCCCceEEeeeeeeecccccccce
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNY-PFERSSSRRQWREV-RRSYD-NSAARGDIYSISFNLRIASNKRCYRPF 1140 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~-~f~~~~~~~~~~~~-~~~~~-~~~~rG~~~~~~~~lsf~ea~~G~~K~ 1140 (1166)
+.||.+++... . ................+ .|.. +....|..+ |++.. ...++|.++.+.+.|+|+|+++|+++.
T Consensus 64 ~~YD~~G~~g~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~ 140 (378)
T PRK14283 64 QRYDQFGHAGM-D-GFSQEDIFNNINFEDIFQGFGF-GIGNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKD 140 (378)
T ss_pred HHHhhhccccc-c-cccccccccccCcccccccccc-chhhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceE
Confidence 99999765311 0 00000000000000000 0000 000111111 12111 112468899999999999999999999
Q ss_pred eeceeeeee-eecceeee
Q 039706 1141 VTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1141 i~~~~~~~C-~C~G~~q~ 1157 (1166)
|++.+.+.| +|+|+|..
T Consensus 141 i~~~r~~~C~~C~G~G~~ 158 (378)
T PRK14283 141 IKVRHTKKCPVCNGSRAE 158 (378)
T ss_pred EEeeeeccCCCCCccccC
Confidence 999999888 88887653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=179.00 Aligned_cols=183 Identities=15% Similarity=0.086 Sum_probs=152.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
..+++..|+..--..+++++.+.++++.++.|++...+.+.|+..++++|.++|+....-.. ... .-
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~-----------~~~--~k 247 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA-----------SMM--PK 247 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH-----------hhh--HH
Confidence 37999999999999999999999999999999999999999999999999999976543000 000 00
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
.+..+..-|.-.+..|++.+|.+.|..++..+|.. ....+..|.+++.+..++|+..+||...+.|+.++
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n----------~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN----------KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc----------cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 12234567888999999999999999998888763 23456778899999999999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 870 VESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 870 ~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
+....+|..+|.||+.+++|++|+++|++|+++..+ ......+..+
T Consensus 318 ----~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 318 ----SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence 999999999999999999999999999999998766 4443333333
|
|
| >TIGR02349 DnaJ_bact chaperone protein DnaJ | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-18 Score=199.43 Aligned_cols=147 Identities=29% Similarity=0.388 Sum_probs=105.5
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhc
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRS 1064 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~ 1064 (1166)
+||++|||+++++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~vL~d~~~R~ 59 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD---------------------KEAEEKFKEINEAYEVLSDPEKRA 59 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------ccHHHHHHHHHHHHHHhhChHHHH
Confidence 69999999999999999999999999999999751 357889999999999999999999
Q ss_pred ccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-------CCCCCCCceEEeeeeeeecccccc
Q 039706 1065 RYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-------NSAARGDIYSISFNLRIASNKRCY 1137 (1166)
Q Consensus 1065 ~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-------~~~~rG~~~~~~~~lsf~ea~~G~ 1137 (1166)
.||.++..... .+.+.+..+...+ ....|+ .....|..+|++.. ...++|.++.+.+.|+|+|+++|+
T Consensus 60 ~yd~~g~~~~~--~~~~~~~~~~~~~-~~~~~~--~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~ 134 (354)
T TIGR02349 60 QYDQFGHAGFN--GGGGGGGGGFNGF-DIGFFG--DFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGV 134 (354)
T ss_pred hhhhccccccc--ccCcCCCCCcCCc-cccCcC--chhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCe
Confidence 99997653111 0001000000000 000111 11123444554311 122468899999999999999999
Q ss_pred cceeeceeeeee-eecceeee
Q 039706 1138 RPFVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1138 ~K~i~~~~~~~C-~C~G~~q~ 1157 (1166)
++.|++.+.+.| +|+|+|..
T Consensus 135 ~~~i~~~r~~~C~~C~G~G~~ 155 (354)
T TIGR02349 135 EKEIEIPRKESCETCHGTGAK 155 (354)
T ss_pred eEEEEeecCCcCCCCCCCCCC
Confidence 999999999988 88887753
|
This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. |
| >PRK14300 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-18 Score=200.70 Aligned_cols=153 Identities=27% Similarity=0.405 Sum_probs=107.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||+|||++|++||||+++. ..|+++|++|++||++|+||.+|
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~L~d~~~r 61 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA---------------------KDAEKKFKEINAAYDVLKDEQKR 61 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------cCHHHHHHHHHHHHHHhhhHhHh
Confidence 489999999999999999999999999999999752 25788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc----CC-----CCCCCCceEEeeeeeeeccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY----DN-----SAARGDIYSISFNLRIASNK 1134 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~~-----~~~rG~~~~~~~~lsf~ea~ 1134 (1166)
+.||.++..... ...+.++.+.. ..| .. .....|.++|+.+ .. ...+|.++.+.+.|+|+|++
T Consensus 62 ~~yD~~G~~~~~--~~~~~~~~g~~---~~~--~~-~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~ 133 (372)
T PRK14300 62 AAYDRFGHDAFQ--NQQSRGGGGNH---GGF--HP-DINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAF 133 (372)
T ss_pred hHHHhccccccc--cccccCCCCCC---Ccc--cc-chhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHh
Confidence 999997653111 00000000000 000 00 0001133333221 10 11368899999999999999
Q ss_pred ccccceeeceeeeee-eecceeeeeecccccc
Q 039706 1135 RCYRPFVTIREFMAC-ACQWRYQIVESQTEDC 1165 (1166)
Q Consensus 1135 ~G~~K~i~~~~~~~C-~C~G~~q~~~~~~~~c 1165 (1166)
.|+++.|++.+.+.| +|+|+|...-.++..|
T Consensus 134 ~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C 165 (372)
T PRK14300 134 HGIEKNISFSSEVKCDTCHGSGSEKGETVTTC 165 (372)
T ss_pred CCceEEEEeeeccccCCCCCcccCCCCCCccC
Confidence 999999999999888 8888775443333433
|
|
| >PRK14289 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-18 Score=200.14 Aligned_cols=148 Identities=29% Similarity=0.428 Sum_probs=104.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.+||++|||++|++||||+++.. +.|+++|++|++||++|+||.+|
T Consensus 5 ~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------------------~~a~~~f~~i~~Ay~~L~d~~~R 64 (386)
T PRK14289 5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD--------------------KEAEEKFKEAAEAYDVLSDPDKR 64 (386)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--------------------hHHHHHHHHHHHHHHHhcCHHHH
Confidence 4999999999999999999999999999999998521 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc----------C-----CCCCCCCceEEeeee
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY----------D-----NSAARGDIYSISFNL 1128 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----------~-----~~~~rG~~~~~~~~l 1128 (1166)
+.||.++.... ..+.+.++..+ . .+.+. ..+..|.++|+++ . ....+|.++.+.+.|
T Consensus 65 ~~yD~~G~~~~--~~~~~~~~~~~--~--~~~~~--~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~v 136 (386)
T PRK14289 65 SRYDQFGHAGV--GGAAGGGGFSG--E--GMSME--DIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKL 136 (386)
T ss_pred HHHHHhccccc--ccCCCCCCCCC--C--CcChh--hhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEE
Confidence 99999775311 00001000000 0 00000 0001121122210 0 012357899999999
Q ss_pred eeecccccccceeeceeeeee-eecceeeeee
Q 039706 1129 RIASNKRCYRPFVTIREFMAC-ACQWRYQIVE 1159 (1166)
Q Consensus 1129 sf~ea~~G~~K~i~~~~~~~C-~C~G~~q~~~ 1159 (1166)
+|+|+++|+++.|++.+.+.| +|+|+|...-
T Consensus 137 sLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 168 (386)
T PRK14289 137 NLKEISTGVEKKFKVKKYVPCSHCHGTGAEGN 168 (386)
T ss_pred EHHHhhCCeEEEEEEEeecccCCCCCCCCCCC
Confidence 999999999999999999988 8887775433
|
|
| >PRK14290 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-18 Score=197.64 Aligned_cols=145 Identities=28% Similarity=0.374 Sum_probs=103.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++|++|||++|++||||+++.. ...|+++|++|++||++|+||.+|
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------------------~~~a~~~f~~i~~Ay~~L~d~~~r 63 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN-------------------KAEAEEKFKEISEAYEVLSDPQKR 63 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------------------hhHHHHHHHHHHHHHHHhcChhhh
Confidence 4899999999999999999999999999999997521 236889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc-C--------C-CC--CCCCceEEeeeeeee
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY-D--------N-SA--ARGDIYSISFNLRIA 1131 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~--------~-~~--~rG~~~~~~~~lsf~ 1131 (1166)
+.||.++..... .++++.. . .... .|+ .....|..+|++. . . .. ++|.++.+.+.|+|+
T Consensus 64 ~~yd~~G~~~~~---~~~~~~~-~-~~~~--~~~--~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLe 134 (365)
T PRK14290 64 RQYDQTGTVDFG---AGGSNFN-W-DNFT--HFS--DINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLE 134 (365)
T ss_pred hhhcccCCcccc---cCCCCcc-c-cccc--ccc--chhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHH
Confidence 999997653110 0000000 0 0000 011 1112244444421 0 0 01 127799999999999
Q ss_pred cccccccceeeceeeeee-eecceee
Q 039706 1132 SNKRCYRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1132 ea~~G~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
|++.|+++.|++.+.+.| +|+|+|.
T Consensus 135 e~~~G~~~~i~~~r~~~C~~C~G~g~ 160 (365)
T PRK14290 135 DAYYGTEKRIKYRRNAMCPDCSGTGA 160 (365)
T ss_pred HhcCCEEEEEEeeecccCCCCccccC
Confidence 999999999999988888 7777664
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=180.62 Aligned_cols=242 Identities=18% Similarity=0.155 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
++..+|..++-.|++..|..+|+.+|.++|.+...|+.+|.+|....+.++-.+.|.
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~----------------------- 384 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFN----------------------- 384 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHH-----------------------
Confidence 344555555666666666666666666666665556666666555555555555444
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
+|..++|.++++|+.+|.+++-+++|++|+..|++++.++|.+..+
T Consensus 385 ---------------------------------~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~- 430 (606)
T KOG0547|consen 385 ---------------------------------KAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA- 430 (606)
T ss_pred ---------------------------------HHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH-
Confidence 4555666677788888888888888888888888888888866432
Q ss_pred cccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 770 DANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 770 ~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
+..++.+.+++++++++...|+.+...-| ...+.+...|.++
T Consensus 431 ------------------------~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP--------------~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 431 ------------------------YIQLCCALYRQHKIAESMKTFEEAKKKFP--------------NCPEVYNLFAEIL 472 (606)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CCchHHHHHHHHH
Confidence 44567777888888888888887633222 2234444458889
Q ss_pred HHcCChHHHHHHHHHHHhccccCCc--hhHHHHHHHHHHHH-HhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHP--FAAICFCNRAAAYK-ALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p--~~a~a~~nlA~ay~-~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
..+++|+.|++.|..|+.+.+..+. .++..+.+.|.+.. -.+++..|+..+++|+++||..-.|+..||.+.+.+|+
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998832111 14555555554433 34889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 039706 927 YDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 927 yeeAi~~yekALeL~P~~~e 946 (1166)
.++|++.|++++.+.....+
T Consensus 553 i~eAielFEksa~lArt~~E 572 (606)
T KOG0547|consen 553 IDEAIELFEKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 99999999999988666544
|
|
| >KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-18 Score=186.92 Aligned_cols=69 Identities=48% Similarity=0.720 Sum_probs=64.9
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.|||++|||+++|+..|||+|||||||+|||||++.. +.|.+.|+.|+.||+|||||.||
T Consensus 16 rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd--------------------p~A~e~F~~in~AYEVLsDpekR 75 (336)
T KOG0713|consen 16 RDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD--------------------PNANEKFKEINAAYEVLSDPEKR 75 (336)
T ss_pred CCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--------------------HHHHHHHHHHHHHHHHhcCHHHH
Confidence 5999999999999999999999999999999999853 68999999999999999999999
Q ss_pred cccchhhhh
Q 039706 1064 SRYDLEEET 1072 (1166)
Q Consensus 1064 ~~YD~~~~~ 1072 (1166)
+.||.+++.
T Consensus 76 k~YD~~GEe 84 (336)
T KOG0713|consen 76 KHYDTYGEE 84 (336)
T ss_pred HHHHhhhHh
Confidence 999998853
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-17 Score=184.27 Aligned_cols=263 Identities=20% Similarity=0.140 Sum_probs=112.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 613 NRAATRMALGRMRDALSDCMLAV-AI-DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekAL-el-dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
.+|.+++..|++++|+..+.+.+ .. .|++...|..+|.+...+++++.|+..|++++..++.+..+.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~----------- 81 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY----------- 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence 46999999999999999997655 44 488999999999999999999999999999999877643221
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
..+..+ ...+++++|+.++.++.+..+ ++..+.....++...++++++...++++....+.. .
T Consensus 82 ---------~~l~~l---~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~--- 144 (280)
T PF13429_consen 82 ---------ERLIQL---LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP-D--- 144 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T---
T ss_pred ---------cccccc---ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC-C---
Confidence 111111 246899999999999887664 46677778889999999999999999987543211 0
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
....+..+|.++...|+.++|+..|++++...| .+......++..+.
T Consensus 145 -------------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P--------------~~~~~~~~l~~~li 191 (280)
T PF13429_consen 145 -------------------SARFWLALAEIYEQLGDPDKALRDYRKALELDP--------------DDPDARNALAWLLI 191 (280)
T ss_dssp --------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T--------------T-HHHHHHHHHHHC
T ss_pred -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------CCHHHHHHHHHHHH
Confidence 012246689999999999999999999854433 34455666788899
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
..|++++|.+.+....... |.++.+|..+|.+|..+|++++|+.+|++++..+|+++..+..+|.++...|++++|
T Consensus 192 ~~~~~~~~~~~l~~~~~~~----~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA----PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred HCCChHHHHHHHHHHHHHC----cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999888888887765 667778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 039706 931 ASDFHRLIAL 940 (1166)
Q Consensus 931 i~~yekALeL 940 (1166)
...++++++.
T Consensus 268 ~~~~~~~~~~ 277 (280)
T PF13429_consen 268 LRLRRQALRL 277 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999999865
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-16 Score=169.39 Aligned_cols=273 Identities=18% Similarity=0.106 Sum_probs=228.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHhC---C-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 616 ATRMALGRMRDALSDCMLAVAID---P-------DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeld---P-------~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
.+++...+.+.|-..+...++++ | .++.-..++|.||+++|-+.+|.+.++.+|+..|.-
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~---------- 256 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---------- 256 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch----------
Confidence 35667778888888887777654 2 123334689999999999999999999999876651
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
+.+..+...+ ....+...|+..|.+.+...|.+...+...|+++..++++++|+++|+.++++.|.+
T Consensus 257 -----------dTfllLskvY--~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 257 -----------DTFLLLSKVY--QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN 323 (478)
T ss_pred -----------hHHHHHHHHH--HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 1111122222 246788999999999999999999999999999999999999999999999999988
Q ss_pred CCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhh
Q 039706 766 SPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSA 845 (1166)
Q Consensus 766 ~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~l 845 (1166)
.++. ..+|.-|++-++.|-|+.+|++.+. ......+.+.++
T Consensus 324 vEai-------------------------Acia~~yfY~~~PE~AlryYRRiLq--------------mG~~speLf~Ni 364 (478)
T KOG1129|consen 324 VEAI-------------------------ACIAVGYFYDNNPEMALRYYRRILQ--------------MGAQSPELFCNI 364 (478)
T ss_pred ceee-------------------------eeeeeccccCCChHHHHHHHHHHHH--------------hcCCChHHHhhH
Confidence 7762 2266778999999999999999743 333446678889
Q ss_pred hHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q 039706 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR 925 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG 925 (1166)
|.+++-.++++-++..|++|+... ......+.+|||+|.+....|++.-|..+|+.||..|+++.+++.+||.+-...|
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG 443 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC
Confidence 999999999999999999999876 2234568899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHhhccC
Q 039706 926 DYDHAASDFHRLIALLTKQIEKSNQS 951 (1166)
Q Consensus 926 dyeeAi~~yekALeL~P~~~e~~~~~ 951 (1166)
+.++|...|..|-.+.|...+...+.
T Consensus 444 ~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 444 DILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred chHHHHHHHHHhhhhCccccccccce
Confidence 99999999999999999887765443
|
|
| >PRK14292 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-17 Score=193.56 Aligned_cols=141 Identities=28% Similarity=0.426 Sum_probs=104.3
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~---------------------~~a~~~~~~i~~Ay~vL~d~~~r 60 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE---------------------KGAAEKFAQINEAYAVLSDAEKR 60 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------hhHHHHHHHHHHHHHHhcchhhh
Confidence 489999999999999999999999999999999752 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-------CCCCCCCceEEeeeeeeeccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-------NSAARGDIYSISFNLRIASNKRC 1136 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-------~~~~rG~~~~~~~~lsf~ea~~G 1136 (1166)
+.||.++..... +.+ +++.. ..+.|+ ....|..+|++.. ....+|.++.+.+.|+|+|+++|
T Consensus 61 ~~yd~~G~~~~~---~~~-~~~~~----~~~~~d---~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G 129 (371)
T PRK14292 61 AHYDRFGTAPGA---GMP-GGDPF----GGMGFD---PMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAG 129 (371)
T ss_pred hhHhhcCCcccc---ccc-CCccc----CccCCC---hHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCC
Confidence 999997753210 000 00000 001111 1122444444211 11246789999999999999999
Q ss_pred ccceeeceeeeee-eecceee
Q 039706 1137 YRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1137 ~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
+++.|++.+...| +|+|+|.
T Consensus 130 ~~~~v~~~r~~~C~~C~G~G~ 150 (371)
T PRK14292 130 EEVEVEVDRLTECEHCHGSRT 150 (371)
T ss_pred eEEEEEEEeeecCCCCccccc
Confidence 9999999988888 8877664
|
|
| >PRK14293 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-17 Score=193.82 Aligned_cols=147 Identities=26% Similarity=0.364 Sum_probs=105.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++|++|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~a~~~f~~i~~Ay~vL~~~~~R 61 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE---------------------PGAEDRFKEINRAYEVLSDPETR 61 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------cCHHHHHHHHHHHHHHHhchHHH
Confidence 489999999999999999999999999999999752 25788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----------CCCCCCCceEEeeeeeeec
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----------NSAARGDIYSISFNLRIAS 1132 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----------~~~~rG~~~~~~~~lsf~e 1132 (1166)
+.||.++.... . ++.+..+. .+ +. +....|..+|+++. ....+|.++.+.+.|+|+|
T Consensus 62 ~~yd~~g~~g~--~--~~~~~~~~-~~-----~~--~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee 129 (374)
T PRK14293 62 ARYDQFGEAGV--S--GAAGFPDM-GD-----MG--GFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFRE 129 (374)
T ss_pred HHHhhcccccc--c--cCCCcCCc-cc-----cc--chHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHH
Confidence 99999765211 0 01000000 00 00 00112333443210 1123578999999999999
Q ss_pred ccccccceeeceeeeee-eecceeeeeecccc
Q 039706 1133 NKRCYRPFVTIREFMAC-ACQWRYQIVESQTE 1163 (1166)
Q Consensus 1133 a~~G~~K~i~~~~~~~C-~C~G~~q~~~~~~~ 1163 (1166)
++.|+++.|++.+.+.| +|+|+|......++
T Consensus 130 ~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 161 (374)
T PRK14293 130 AIFGGEKEIRIPHLETCETCRGSGAKPGTGPT 161 (374)
T ss_pred HhCCceEEEEeeccccCCCCCCcCCCCCCCCe
Confidence 99999999999998888 88877654433333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-15 Score=161.07 Aligned_cols=276 Identities=15% Similarity=0.150 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
...++.+|..++..|++..|+..|..|++.||++..+++++|.+|+.+|+-..|+..+.++|++.|+...++
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR-------- 109 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR-------- 109 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH--------
Confidence 345788999999999999999999999999999999999999999999999999999999999999943221
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH---HHH------------HHHHHHHHHccCHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE---KLL------------EMKAEALFMLRKYEEVI 752 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~---~al------------~~lA~~y~~lGdyeeAi 752 (1166)
+.+... ..++|.+++|..-|+.+|.-+|.+. +++ ......++..|++..||
T Consensus 110 -----------iQRg~v---llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 110 -----------IQRGVV---LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred -----------HHhchh---hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 111112 2358999999999999999988432 222 22333455568999999
Q ss_pred HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 753 QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 753 ~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
.++..+|++.|=+.. .+...+.+|...|+...|+..++.+.....
T Consensus 176 ~~i~~llEi~~Wda~-------------------------l~~~Rakc~i~~~e~k~AI~Dlk~askLs~---------- 220 (504)
T KOG0624|consen 176 EMITHLLEIQPWDAS-------------------------LRQARAKCYIAEGEPKKAIHDLKQASKLSQ---------- 220 (504)
T ss_pred HHHHHHHhcCcchhH-------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHhccc----------
Confidence 999999998763211 135688999999999999999988643222
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHH------------HHHHHHHHhhchhHHHHHH
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFC------------NRAAAYKALRHITDAIADC 900 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~------------nlA~ay~~lGq~eeAi~~l 900 (1166)
...+.++.+..+++..|+.+.++...+++|+++ |+.-.||- .-+......++|.++++..
T Consensus 221 ----DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld----pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~g 292 (504)
T KOG0624|consen 221 ----DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD----PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAG 292 (504)
T ss_pred ----cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 224556677899999999999999999999999 44433332 1233455678899999999
Q ss_pred HHHHHhCCChHHH----HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 901 NLAIALDGNYLKA----ISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 901 ekALeldP~~~~A----~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+++++.+|..+.. ...+-.||..-+++.+|++...++|.++|++.+..
T Consensus 293 e~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 293 EKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 9999999985543 44467889999999999999999999999987754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-15 Score=173.77 Aligned_cols=274 Identities=15% Similarity=0.102 Sum_probs=229.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQV-RAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~-~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+-.+|..++...+|.+.+..++..++.+|-+..++- .+| |+..+|+..+-...-.+.+...|+.+..|.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~--------- 316 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWF--------- 316 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchh---------
Confidence 456788888999999999999999999998877664 455 888888887777777777788888544322
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
..+.++ .-.+.+.+|..+|.++..++|....+|...|..+...+..++|+.+|..|-++-|....+
T Consensus 317 -----------aVg~YY--l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP- 382 (611)
T KOG1173|consen 317 -----------AVGCYY--LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP- 382 (611)
T ss_pred -----------hHHHHH--HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch-
Confidence 222222 236999999999999999999999999999999999999999999999999998765432
Q ss_pred cccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 770 DANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 770 ~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
...+|.-|.+.++++-|...|.+|....|. +...+..+|.++
T Consensus 383 ------------------------~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~--------------Dplv~~Elgvva 424 (611)
T KOG1173|consen 383 ------------------------SLYLGMEYMRTNNLKLAEKFFKQALAIAPS--------------DPLVLHELGVVA 424 (611)
T ss_pred ------------------------HHHHHHHHHHhccHHHHHHHHHHHHhcCCC--------------cchhhhhhhhee
Confidence 345899999999999999999998554443 456677889999
Q ss_pred HHcCChHHHHHHHHHHHhcccc---CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 850 FQAGRHSEAVEHYTAALSCTVE---SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e---~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
+..+.|.+|+.+|+.++...+. ..+.-...+.|+|.+|.+++.+++||.+++++|.+.|.++.++..+|.+|..+|+
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 9999999999999999954321 1123456789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 039706 927 YDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 927 yeeAi~~yekALeL~P~~~e 946 (1166)
++.|+..|.++|.+.|.+.-
T Consensus 505 ld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 505 LDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred hHHHHHHHHHHHhcCCccHH
Confidence 99999999999999998843
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.7e-16 Score=178.63 Aligned_cols=263 Identities=16% Similarity=0.108 Sum_probs=193.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
|..|..+++.|...+|+-.|+.|+..+|.+++||..||.++...++-..|+..+++|++++|++
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N---------------- 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN---------------- 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc----------------
Confidence 3469999999999999999999999999999999999999999998888888888888777764
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
.+++..||..|...|.-.+|+.++.+.|...|........
T Consensus 353 ----------------------------------------leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a 392 (579)
T KOG1125|consen 353 ----------------------------------------LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSA 392 (579)
T ss_pred ----------------------------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcccc
Confidence 3445556666666666677777777776665543211000
Q ss_pred cCcccccCcc---c-hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 772 NGQSMELDSS---E-STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 772 ~g~~l~ld~~---~-~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
-...+.. . +.... +..-.++|-.+.. ..+...+......+|.
T Consensus 393 ---~~~~~~~~~~s~~~~~~-------------------l~~i~~~fLeaa~------------~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 393 ---GENEDFENTKSFLDSSH-------------------LAHIQELFLEAAR------------QLPTKIDPDVQSGLGV 438 (579)
T ss_pred ---CccccccCCcCCCCHHH-------------------HHHHHHHHHHHHH------------hCCCCCChhHHhhhHH
Confidence 0000000 0 00000 1111122222111 1111234556677899
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
+|+..++|++|+.+|+.||... |.+..+|+.||.++..-.+.++||..|.+||++.|.++.+++++|.+|+.+|.|
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~----Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVK----PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcC----CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 9999999999999999999988 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhh
Q 039706 928 DHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRL 971 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~L 971 (1166)
.+|+.+|-.||.+.++......... ....+.+-||.+-..+
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~---~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPM---ASENIWQTLRLALSAM 555 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCc---chHHHHHHHHHHHHHc
Confidence 9999999999999887543221111 1245666666555444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-14 Score=166.89 Aligned_cols=314 Identities=17% Similarity=0.083 Sum_probs=223.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhH
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKA 692 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~ 692 (1166)
..|.+.+..|+|+.|+..|..||.++|.+.-.|.++..+|..+|+|++|++.-.+++++.|+=+ .
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~-------k-------- 71 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWA-------K-------- 71 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchh-------h--------
Confidence 4688999999999999999999999999999999999999999999999999999999999821 1
Q ss_pred HhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc---------------------CHHHH
Q 039706 693 QKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR---------------------KYEEV 751 (1166)
Q Consensus 693 ~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG---------------------dyeeA 751 (1166)
.+.+.+..+ ...|+|++|+..|.+.|+.+|.+..++..++.++.... ++-..
T Consensus 72 -----gy~r~Gaa~--~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~ 144 (539)
T KOG0548|consen 72 -----GYSRKGAAL--FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLS 144 (539)
T ss_pred -----HHHHhHHHH--HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhc
Confidence 122222222 24799999999999999999999999999999883321 11122
Q ss_pred HHHHHHHHHhccCCCCCccccCc----------cc-----------------ccCc-------cchhh------hhhhhh
Q 039706 752 IQLCEQTFHFAEKNSPPLDANGQ----------SM-----------------ELDS-------SESTK------HVSFRL 791 (1166)
Q Consensus 752 i~~lekALel~p~n~~a~~~~g~----------~l-----------------~ld~-------~~~~~------~~~~~~ 791 (1166)
-..|...++..+.++..+..+.. ++ ...+ ..... ......
T Consensus 145 ~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 145 DPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred cHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhh
Confidence 23444445544444433211110 00 0000 00000 001112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh--------------hhhhhh-----------ccchH-HHHHHhhh
Q 039706 792 WRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML--------------ESLIPL-----------AGTVR-ELLCRKSA 845 (1166)
Q Consensus 792 wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l--------------e~a~~L-----------~~~~~-~a~~l~~l 845 (1166)
.....+|...+...+++.|+++|..++........ ..++.. ..... .+..+..+
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 33456888889999999999999987764411100 000000 00000 11223346
Q ss_pred hHHHHHcCChHHHHHHHHHHHhccc----------------------cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 846 GNEAFQAGRHSEAVEHYTAALSCTV----------------------ESHPFAAICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kALel~~----------------------e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
|+.|.+.++|+.|+.+|.++|.... -..|.-+.-....|..++..|+|..|+..|.+|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8899999999999999999987441 112333445556789999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 904 IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 904 LeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|..+|+++.+|.+||.||.+++.+..|+.+.+.+++++|+.....
T Consensus 385 Ikr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 385 IKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred HhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 999999999999999999999999999999999999988876654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-14 Score=182.70 Aligned_cols=369 Identities=12% Similarity=-0.048 Sum_probs=234.8
Q ss_pred cccCCCCchhHHHhhhHHhhCcchhHH-------------------HHHHHHHhchHHHHHHH--HHHHHHcCChHHHHH
Q 039706 571 SSRLKGDRNSEVDRGQEIKQEPNLASA-------------------ETIAAQEACEKWRLSNR--AATRMALGRMRDALS 629 (1166)
Q Consensus 571 ~~l~~~~~~a~~~~~~aik~ep~~A~a-------------------~~~aAIe~~e~~ay~nr--A~ayl~lG~y~eAI~ 629 (1166)
.....++..|+..+.++++.+|++..+ ++..++++.+.+++..+ |.+|..+|+|++|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444566789999999999999997421 12222323333455555 779999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHH--------
Q 039706 630 DCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQR-------- 701 (1166)
Q Consensus 630 ~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~-------- 701 (1166)
.|+++++++|+++.++..++.+|...++.++|+..+++++..+|.+... ..+..++....+...+...+..
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999988885433 2222222111111000000000
Q ss_pred ------HHHH-------------HH---------------------hh---------cCC---CHHHHHHHHHHHHHh--
Q 039706 702 ------SAQL-------------LQ---------------------NK---------TSN---DAEIALGVIDEALFI-- 727 (1166)
Q Consensus 702 ------a~~~-------------l~---------------------~~---------~~g---d~eeALe~lekALel-- 727 (1166)
.... +. .. ... -.+.|+..+++.+..
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 0000 00 00 000 123445555555542
Q ss_pred -CCCh----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc-------------------ccCcccccCccch
Q 039706 728 -SSYS----EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD-------------------ANGQSMELDSSES 783 (1166)
Q Consensus 728 -~P~~----~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~-------------------~~g~~l~ld~~~~ 783 (1166)
.|.. ..++.-+-.++..++++.+++..|+.+....... +.+. .+..++..++...
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 2211 1222333334444555555555554433221111 1000 0000000000000
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh-hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 784 TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML-ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 784 ~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l-e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
. ....+.....|..+|...+++++|..++++.....|-... -....-.+++.-......++..+.-.|++.+|.+.+
T Consensus 362 ~--~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 362 R--NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred C--CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 0000000123566788899999999999997653331100 000011233444556666789999999999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 863 TAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
++.+... |.+..++..+|.++...|.+.+|+..++.++.++|.+..+...+|.+++.++++.+|....+.+++..|
T Consensus 440 e~l~~~a----P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 440 EDLSSTA----PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHhC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 9999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHh
Q 039706 943 KQIEK 947 (1166)
Q Consensus 943 ~~~e~ 947 (1166)
++...
T Consensus 516 e~~~~ 520 (822)
T PRK14574 516 EDIPS 520 (822)
T ss_pred CchhH
Confidence 98753
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-15 Score=168.36 Aligned_cols=217 Identities=18% Similarity=0.094 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+|+++|.+|..+|++.+|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------------------ 127 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------------------ 127 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------
Confidence 35666666666666666666666666666666666666666666666666666655555554
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
+|.+..++..+|.+++..|++++|+..++++++++|+++.
T Consensus 128 --------------------------------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-- 167 (296)
T PRK11189 128 --------------------------------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-- 167 (296)
T ss_pred --------------------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--
Confidence 4555566677777777777777777777777777665421
Q ss_pred cccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 770 DANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 770 ~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
..+| ..++...+++++|+..+.++....+. ..+ ..+..+
T Consensus 168 -------------------~~~~-----~~l~~~~~~~~~A~~~l~~~~~~~~~--------------~~~---~~~~~~ 206 (296)
T PRK11189 168 -------------------RALW-----LYLAESKLDPKQAKENLKQRYEKLDK--------------EQW---GWNIVE 206 (296)
T ss_pred -------------------HHHH-----HHHHHccCCHHHHHHHHHHHHhhCCc--------------ccc---HHHHHH
Confidence 0111 11233456777777777654211100 000 013344
Q ss_pred HHcCChHHH--HHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHhh
Q 039706 850 FQAGRHSEA--VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG-NYLKAISRRATLYEMIR 925 (1166)
Q Consensus 850 ~~~G~yeEA--ie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP-~~~~A~~~LA~ay~~lG 925 (1166)
+..|++.++ ++.+.+++...+...|..+.+|+++|.+|..+|++++|+.+|++|++++| ++++..+.+..+....+
T Consensus 207 ~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 207 FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 445555433 22233222222222266778999999999999999999999999999996 77777766666555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-15 Score=180.02 Aligned_cols=239 Identities=11% Similarity=-0.038 Sum_probs=189.2
Q ss_pred HHHHHHHHHc---CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 039706 646 VRAANCHLAL---GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVID 722 (1166)
Q Consensus 646 ~~LA~lyl~l---Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~le 722 (1166)
+..|..++.. +.+++|+..|+++++++|++...+..+..++..+.... .....+++++|+..++
T Consensus 262 ~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g-------------~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 262 YLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMG-------------IFDKQNAMIKAKEHAI 328 (553)
T ss_pred HHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC-------------CcccchHHHHHHHHHH
Confidence 3445444332 35689999999999999997655544433222111100 0113567899999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHH
Q 039706 723 EALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYF 802 (1166)
Q Consensus 723 kALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~ 802 (1166)
++++++|+++.++..+|.++..+|++++|+..|+++++++|++..+ +..+|.+|.
T Consensus 329 ~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-------------------------~~~lg~~l~ 383 (553)
T PRK12370 329 KATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI-------------------------KYYYGWNLF 383 (553)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-------------------------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999976543 456899999
Q ss_pred HcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHH
Q 039706 803 TLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCN 882 (1166)
Q Consensus 803 ~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~n 882 (1166)
..|++++|+..+++++..+|.. ...+..++.+++..|++++|+..+++++... .|..+.++.+
T Consensus 384 ~~G~~~eAi~~~~~Al~l~P~~--------------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~---~p~~~~~~~~ 446 (553)
T PRK12370 384 MAGQLEEALQTINECLKLDPTR--------------AAAGITKLWITYYHTGIDDAIRLGDELRSQH---LQDNPILLSM 446 (553)
T ss_pred HCCCHHHHHHHHHHHHhcCCCC--------------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc---cccCHHHHHH
Confidence 9999999999999987766542 1122234556778999999999999998764 2667788999
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 883 RAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 883 lA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
+|.+|..+|++++|+..+.+++...|....++..++.+|..+|+ +|...++++++..
T Consensus 447 la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998884 7888888866543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=153.69 Aligned_cols=202 Identities=21% Similarity=0.126 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+++++|.+|+..|++++|+..+++++..+|.+..++..+|.+|..+|++++|+..|++++++.|.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------------- 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-------------- 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------------
Confidence 446678888888888888888888888888888888888888888888888888888777665544
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
+..++..+|.++..+|++++|+..+++++...+.. .
T Consensus 98 ------------------------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~- 133 (234)
T TIGR02521 98 ------------------------------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-Q- 133 (234)
T ss_pred ------------------------------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-c-
Confidence 33456667788888888888888888887532100 0
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
....+..+|.+
T Consensus 134 ---------------------------------------------------------------------~~~~~~~l~~~ 144 (234)
T TIGR02521 134 ---------------------------------------------------------------------PARSLENAGLC 144 (234)
T ss_pred ---------------------------------------------------------------------chHHHHHHHHH
Confidence 00112224666
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdye 928 (1166)
+...|++++|+..|.+++... |.....+..+|.++...|++++|+..+++++.+.|..+..+..++.++...|+++
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQID----PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhC----cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 777777777778887777766 5666778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 039706 929 HAASDFHRLIALL 941 (1166)
Q Consensus 929 eAi~~yekALeL~ 941 (1166)
+|....+.+....
T Consensus 221 ~a~~~~~~~~~~~ 233 (234)
T TIGR02521 221 AAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHhhC
Confidence 8888877766553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-13 Score=172.44 Aligned_cols=360 Identities=12% Similarity=-0.021 Sum_probs=225.5
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKW--RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA 654 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~--ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~ 654 (1166)
|..+++.+++- ++.-|...+..++...|.. +.+.++.++...|++++|+..|++++.-+|....++..+|.+|..
T Consensus 38 y~~aii~~r~G---d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAG---DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 34445444433 2345667777777766664 345888889999999999999999994444455555556889999
Q ss_pred cCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHH-----------HHHHHhhcCCCHHHHHHHHHH
Q 039706 655 LGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRS-----------AQLLQNKTSNDAEIALGVIDE 723 (1166)
Q Consensus 655 lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a-----------~~~l~~~~~gd~eeALe~lek 723 (1166)
+|++++|++.|+++++.+|+++..+..+..++....+..++......+ ...+.....+++.+|+..|++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999999999998776665555444444444433322221 111112225667669999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHH----------------------------------------------
Q 039706 724 ALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQ---------------------------------------------- 757 (1166)
Q Consensus 724 ALel~P~~~~al~~lA~~y~~lGdyeeAi~~lek---------------------------------------------- 757 (1166)
+++..|.+.+++..+..++...|-...|++++.+
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 9999999999988888888888776666554442
Q ss_pred --HHHhccCCCCCcccc--------Cccccc-Cccchhh--------hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 758 --TFHFAEKNSPPLDAN--------GQSMEL-DSSESTK--------HVSFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 758 --ALel~p~n~~a~~~~--------g~~l~l-d~~~~~~--------~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
++...+..+++...+ ..+... ....+.. ...+..+.....|.+|+.+++.++|+.+|++++
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 111111111100000 000000 0000000 000001111224455555555555555555543
Q ss_pred cCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc-----------cCCchhHHHHHHHHHHH
Q 039706 819 SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV-----------ESHPFAAICFCNRAAAY 887 (1166)
Q Consensus 819 ~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~-----------e~~p~~a~a~~nlA~ay 887 (1166)
...+.. ...+........+-.+|...++|++|..++++.....| ..+|....+...++.++
T Consensus 355 ~~~~~~--------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 355 YSDGKT--------FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred hccccc--------cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 322210 01111222234456678888888888888888877443 23455667777788888
Q ss_pred HHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 888 KALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 888 ~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
...|++.+|++.+++.+...|.+...+..+|.++...|.+.+|...++.++.+.|++...
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 888888888888888888888888888888888888888888888888888887776553
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-14 Score=166.80 Aligned_cols=288 Identities=10% Similarity=0.006 Sum_probs=208.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
...+|...+..|+|..|...+.++.+..|+...+++..|.++..+|+++.|..+|.++.+..|+......
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~---------- 156 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE---------- 156 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH----------
Confidence 3668899999999999999999999999999999999999999999999999999999998887422110
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
...+.. ....+++++|+..++++++..|+++.++..++.++...|+|++|+..+.+.++..........
T Consensus 157 --------~~~a~l---~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~ 225 (409)
T TIGR00540 157 --------IARTRI---LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA 225 (409)
T ss_pred --------HHHHHH---HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 000111 224799999999999999999999999999999999999999999999999977433222110
Q ss_pred ------ccCcc---------------cccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 771 ------ANGQS---------------MELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 771 ------~~g~~---------------l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
..+.+ ....+.... .....+..++..+...|++++|+..+++++...++.....
T Consensus 226 ~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~----~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~- 300 (409)
T TIGR00540 226 DLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRR----HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS- 300 (409)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHh----CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-
Confidence 00000 000110000 0112234577788888888888888888766544421000
Q ss_pred hhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhH--HHHHHHHHHHHHhhchhHHHHHHH--HHHH
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA--ICFCNRAAAYKALRHITDAIADCN--LAIA 905 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a--~a~~nlA~ay~~lGq~eeAi~~le--kALe 905 (1166)
...+ ........++...+++.++++++.. |.++ .++..+|.++++.|+|++|.++|+ .+++
T Consensus 301 ---------~~~l--~~~~~l~~~~~~~~~~~~e~~lk~~----p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 301 ---------LPLC--LPIPRLKPEDNEKLEKLIEKQAKNV----DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred ---------hHHH--HHhhhcCCCChHHHHHHHHHHHHhC----CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 0011 1222334567777888888888776 6777 777788888888888888888888 5777
Q ss_pred hCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 906 ldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
..|+... +..+|.++..+|+.++|..+|++++.+
T Consensus 366 ~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 366 EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7787655 448888888888888888888887755
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-14 Score=156.95 Aligned_cols=298 Identities=12% Similarity=0.018 Sum_probs=227.1
Q ss_pred hchHHHHHH-HHHHHHHcCChHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 605 ACEKWRLSN-RAATRMALGRMRD--ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 605 ~~e~~ay~n-rA~ayl~lG~y~e--AI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
...+|.+.. .+.+.+..++... +..++-.-...-|++...+..+|.|++..|++.+|+..|++++-++|.+......
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 444555432 3445555555444 4555555666779999999999999999999999999999999999987666555
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHH------------HhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHH
Q 039706 682 AVEASDGLQKAQKVSECMQRSAQLL------------QNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 682 l~Ea~~~L~k~~~~~e~~~~a~~~l------------~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdye 749 (1166)
+.-+...-..+..+..+...+.... ..+..+++..|+.+.+++|..+|.+..++.++|.+++.+++.+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchH
Confidence 5444443333333332222221111 1234789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 750 EVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
+|+-.|+.+..+.|-. +..|.-+..+|...|++.+|+...+.+...-
T Consensus 352 ~A~IaFR~Aq~Lap~r-------------------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-------- 398 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYR-------------------------LEIYRGLFHSYLAQKRFKEANALANWTIRLF-------- 398 (564)
T ss_pred HHHHHHHHHHhcchhh-------------------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------
Confidence 9999999999987743 2235567889999999999998887753211
Q ss_pred hhhccchHHHHHHhhhh-HH-HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 830 IPLAGTVRELLCRKSAG-NE-AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG-~~-~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
...+..+...| .+ ++.----++|...|+++|.+. |....+-..+|.++...|.+.+++..++++|...
T Consensus 399 ------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~----P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 399 ------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN----PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred ------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC----CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 12233333333 22 233334578999999999998 8888899999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|+ ...+..||.++...+.+++|+.+|..|+.++|++..
T Consensus 469 ~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 469 PD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred cc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 86 457888999999999999999999999999998743
|
|
| >PRK14299 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-16 Score=175.48 Aligned_cols=138 Identities=27% Similarity=0.371 Sum_probs=95.2
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||+++++.++||+|||++|++||||+++. ..|+++|++|++||++|+||.+|
T Consensus 4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~L~d~~kr 62 (291)
T PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS---------------------PGAEEKFKEINEAYTVLSDPEKR 62 (291)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHHhcCHHHH
Confidence 499999999999999999999999999999999752 36888999999999999999999
Q ss_pred cccchhhhhhhhhc-cCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-------------CCCCCCCceEEeeeee
Q 039706 1064 SRYDLEEETRNTQK-KQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-------------NSAARGDIYSISFNLR 1129 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~-~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-------------~~~~rG~~~~~~~~ls 1129 (1166)
+.||.++....... .+...+.++...+ ..+.++ .....|..+|++++ ...++|.++.+.+.|+
T Consensus 63 ~~yD~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~is 139 (291)
T PRK14299 63 RIYDTYGTTAASAGWQGPPPGPPGGGDF-SGFNVG--DFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLT 139 (291)
T ss_pred HHHHhcCCccccccccCCCCCCCCCCCc-cccCcC--CHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEec
Confidence 99999775311000 0000000000000 001111 11122444444211 1234688999999999
Q ss_pred eecccccccceeecee
Q 039706 1130 IASNKRCYRPFVTIRE 1145 (1166)
Q Consensus 1130 f~ea~~G~~K~i~~~~ 1145 (1166)
|+|++.|+++.|++..
T Consensus 140 L~ea~~G~~~~i~l~g 155 (291)
T PRK14299 140 LEEAYRGGEKVVEVAG 155 (291)
T ss_pred HHHHhCCCeEEEeeCC
Confidence 9999999999997753
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.9e-14 Score=158.04 Aligned_cols=80 Identities=11% Similarity=-0.011 Sum_probs=71.5
Q ss_pred HHHHHHHHHhc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 039706 596 SAETIAAQEAC--EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGS 673 (1166)
Q Consensus 596 ~a~~~aAIe~~--e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P 673 (1166)
...+..|+... .+.+|+++|.+|..+|++++|+..|+++++++|++..+|..+|.++...|++++|++.|+++++++|
T Consensus 84 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 84 RNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34445555544 4588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc
Q 039706 674 DV 675 (1166)
Q Consensus 674 ~n 675 (1166)
++
T Consensus 164 ~~ 165 (296)
T PRK11189 164 ND 165 (296)
T ss_pred CC
Confidence 85
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-14 Score=164.11 Aligned_cols=253 Identities=13% Similarity=0.048 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
+.-..+| +++.+|+..+=...-.+.+...|+.+-.|+..|.-|+..|++.+|..+|.++..++|....+|..+
T Consensus 280 ~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~f------ 352 (611)
T KOG1173|consen 280 CLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAF------ 352 (611)
T ss_pred hHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHH------
Confidence 4445566 999999999888888899999999999999999999999999999999999999999866554332
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
+..+. ..++.++|+.+|..|-++-|.+-.-.+.+|.-|.+++.++-|...+.+|+.+.|.++-.
T Consensus 353 --------------ghsfa--~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv 416 (611)
T KOG1173|consen 353 --------------GHSFA--GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV 416 (611)
T ss_pred --------------hHHhh--hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh
Confidence 22222 36889999999999999999888888889999999999999999999999999987543
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
+..+|.+.+..+.|.+|+.+|+.++..-... +...+.-...+.++|.+
T Consensus 417 -------------------------~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~-------~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 417 -------------------------LHELGVVAYTYEEYPEALKYFQKALEVIKSV-------LNEKIFWEPTLNNLGHA 464 (611)
T ss_pred -------------------------hhhhhheeehHhhhHHHHHHHHHHHHHhhhc-------cccccchhHHHHhHHHH
Confidence 3558889999999999999999985211110 11111234457789999
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
+.+.++|++||.+|+++|.+. |.++.++..+|.+|..+|+++.|+++|.+||.+.|++.-+--.|+.+
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~----~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLS----PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcC----CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999999999999999999997666555533
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-13 Score=165.65 Aligned_cols=264 Identities=17% Similarity=0.129 Sum_probs=197.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAI--------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALel--------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
..++|..|...|+|++|+..|++|+++ .|.-......+|.+|..++++.+|+..|++|+.+--.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~-------- 273 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE-------- 273 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH--------
Confidence 355788888888888888888888877 4444445555777777777777777777777653100
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 039706 683 VEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 683 ~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~ 762 (1166)
..| ..+|....++.++|.+|...|++++|..+|++++++.
T Consensus 274 ---------------------------~~G-------------~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 274 ---------------------------VFG-------------EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred ---------------------------hcC-------------CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 001 1234456788899999999999999999999999997
Q ss_pred cCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHH
Q 039706 763 EKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCR 842 (1166)
Q Consensus 763 p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l 842 (1166)
...... ....+.. .+..++.++...+++++|+.++++++..-... .-..++..+..+
T Consensus 314 ~~~~~~----------~~~~v~~-------~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~------~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 314 EKLLGA----------SHPEVAA-------QLSELAAILQSMNEYEEAKKLLQKALKIYLDA------PGEDNVNLAKIY 370 (508)
T ss_pred HHhhcc----------ChHHHHH-------HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh------ccccchHHHHHH
Confidence 652211 2222222 24678899999999999999999974421100 011223456677
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC-------CChH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD-------GNYL 911 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld-------P~~~ 911 (1166)
.++|..|+..|+|.+|.+.|++||.+.. .........+.++|..|.+++++.+|...|.+++.+. |+-.
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 8899999999999999999999998763 3345667888999999999999999999999998773 5556
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
..|.+||.+|..+|+|++|+++.++++.......
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999997654443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-13 Score=160.19 Aligned_cols=287 Identities=9% Similarity=0.007 Sum_probs=210.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ-VRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~-~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
++..|...+..|+|++|.....++-...+ ++..+ ...+.+..+.|+++.|..+|.++.+..|++......
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l-------- 157 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEI-------- 157 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHH--------
Confidence 46688888899999999977777655433 34444 444666699999999999999999998885321110
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
..+.. +...|++++|+..++++++..|.++.++..++.+|...|+|++|+..+.++.+.........
T Consensus 158 ----------~~a~l---~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~ 224 (398)
T PRK10747 158 ----------TRVRI---QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHR 224 (398)
T ss_pred ----------HHHHH---HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHH
Confidence 11111 23489999999999999999999999999999999999999999999988887655432211
Q ss_pred ccc-Ccc----c----cc-Cccchh-------hhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 770 DAN-GQS----M----EL-DSSEST-------KHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 770 ~~~-g~~----l----~l-d~~~~~-------~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
..+ ..+ + .. +..... ............++..+...|+.++|...+++++...++.
T Consensus 225 ~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~-------- 296 (398)
T PRK10747 225 AMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE-------- 296 (398)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--------
Confidence 100 000 0 00 000000 0000011223457889999999999999999975533331
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
.... .......++.++|++.+++.++.. |.++..+..+|.++...++|++|..+|++++++.|+..
T Consensus 297 -------~l~~--l~~~l~~~~~~~al~~~e~~lk~~----P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~- 362 (398)
T PRK10747 297 -------RLVL--LIPRLKTNNPEQLEKVLRQQIKQH----GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY- 362 (398)
T ss_pred -------HHHH--HHhhccCCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-
Confidence 1111 112234589999999999999877 89999999999999999999999999999999999865
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
.+..++.++..+|+.++|..+|++++.+.
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 46679999999999999999999998764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-13 Score=151.67 Aligned_cols=272 Identities=15% Similarity=0.067 Sum_probs=220.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDF-LRVQVRAANCHLALG--EIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~-~~A~~~LA~lyl~lG--d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+.|-.|++.|+++.|++.+.-.-..+..- ..+-.+|..+++.+| ++..|.++...++.++.-++.+..
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~-------- 494 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT-------- 494 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh--------
Confidence 678899999999999999886554444333 234556666666643 788999999998887654432110
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
.... ..+..|++++|++.|.+||.-+..+.++++++|..+..+|+.++|+.+|-++-.+-.++.+
T Consensus 495 -----------nkgn---~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e- 559 (840)
T KOG2003|consen 495 -----------NKGN---IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE- 559 (840)
T ss_pred -----------cCCc---eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH-
Confidence 0000 1234799999999999999999999999999999999999999999999887655443322
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
.+..++.+|..+.+..+|+++|.++... .+.+...+..+|.+
T Consensus 560 ------------------------vl~qianiye~led~aqaie~~~q~~sl--------------ip~dp~ilskl~dl 601 (840)
T KOG2003|consen 560 ------------------------VLVQIANIYELLEDPAQAIELLMQANSL--------------IPNDPAILSKLADL 601 (840)
T ss_pred ------------------------HHHHHHHHHHHhhCHHHHHHHHHHhccc--------------CCCCHHHHHHHHHH
Confidence 2466899999999999999999986322 22334556667999
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdye 928 (1166)
|-+.|+-.+|.+++-.....- |.+..+.-++|..|....-+++||.+|++|--+.|+..+-.+.+|.|+.+.|+|+
T Consensus 602 ydqegdksqafq~~ydsyryf----p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRYF----PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred hhcccchhhhhhhhhhccccc----CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999988887766 8888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHhh
Q 039706 929 HAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 929 eAi~~yekALeL~P~~~e~~ 948 (1166)
.|...|+..-..+|++++..
T Consensus 678 ka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HHHHHHHHHHHhCccchHHH
Confidence 99999999999999987743
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-12 Score=159.21 Aligned_cols=333 Identities=17% Similarity=0.128 Sum_probs=223.7
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
++..|+.-....|+++|.+..+++. +|.+|-.+|+..+|+...-.|-.++|++...|..+|....++
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~t-------------L~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYT-------------LGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHH-------------HHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 3456666666777777776665554 788888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHH----------------HHHHH-hhcCCCHHHHH
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRS----------------AQLLQ-NKTSNDAEIAL 718 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a----------------~~~l~-~~~~gd~eeAL 718 (1166)
|.+.+|.-+|.+||+.+|.++.-......++...+....+...+..+ ..... ....++-+.|+
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888888888888888876544333333333333332222221111 11011 12345558888
Q ss_pred HHHHHHHHhC--CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccCCCCC-----------------------ccc
Q 039706 719 GVIDEALFIS--SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF--AEKNSPP-----------------------LDA 771 (1166)
Q Consensus 719 e~lekALel~--P~~~~al~~lA~~y~~lGdyeeAi~~lekALel--~p~n~~a-----------------------~~~ 771 (1166)
..++.++... -....-+..++.+++....++.|+......... .++..+. +..
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 8888888733 233456678899999999999998877665541 1110000 000
Q ss_pred ---cCcccccCccchhh---------h--hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchH
Q 039706 772 ---NGQSMELDSSESTK---------H--VSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVR 837 (1166)
Q Consensus 772 ---~g~~l~ld~~~~~~---------~--~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~ 837 (1166)
.--++.++...... . .......+..++.+|...|++.+|+.+|..+..... ..
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-------------~~ 447 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG-------------YQ 447 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-------------cc
Confidence 00001111111110 0 111233456789999999999999999988643322 22
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC--------
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN-------- 909 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~-------- 909 (1166)
.+..|+.+|.+|..++.|++|+++|.++|.++ |.+..+...++.+|.++|+.++|++.++..+.-|+.
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~----p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILA----PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 36678889999999999999999999999998 999999999999999999999999999987633322
Q ss_pred -hHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 910 -YLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 910 -~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
.....+.+..+|...|+.++=+..-...+
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 24567788999999999998544443333
|
|
| >KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.2e-16 Score=172.39 Aligned_cols=141 Identities=27% Similarity=0.384 Sum_probs=105.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++||+.++++..|||.||++||++||||.+.. +.|.++|++|.+||+||+|++||
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~---------------------~~a~~kF~eI~~AYEiLsd~eKR 101 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD---------------------KEASKKFKEISEAYEILSDEEKR 101 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC---------------------cchhhHHHHHHHHHHHhcCHHHH
Confidence 389999999999999999999999999999999863 37999999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccCCCCCCCCceEEeeeeeeecccccccceeec
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYDNSAARGDIYSISFNLRIASNKRCYRPFVTI 1143 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~rG~~~~~~~~lsf~ea~~G~~K~i~~ 1143 (1166)
+.||..+... .++.+ + .+ ...+...+++-.+-...+.+..+...+.|+||++|+++.+++
T Consensus 102 ~~YD~~~~~~-----~~~~~--g-------~~------~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~ 161 (288)
T KOG0715|consen 102 QEYDVYGLEQ-----HGEFG--G-------NP------FDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISF 161 (288)
T ss_pred HHHHHhhhhc-----ccccc--C-------Cc------cchHHHhhcccccccccCcccccccccCHHHHhhccccceEE
Confidence 9999977532 00000 0 11 111222222201111224466677899999999999999999
Q ss_pred eeeeee-eecceeeeeecccccc
Q 039706 1144 REFMAC-ACQWRYQIVESQTEDC 1165 (1166)
Q Consensus 1144 ~~~~~C-~C~G~~q~~~~~~~~c 1165 (1166)
.....| +|.|.+-......+.|
T Consensus 162 ~~~~~~~t~~~~~~~~~~~~~~~ 184 (288)
T KOG0715|consen 162 NVLSDCETCFGSGAEEGAKRESC 184 (288)
T ss_pred EeecccccccCcCcccccccccc
Confidence 999999 9999884444444444
|
|
| >PRK10266 curved DNA-binding protein CbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-15 Score=170.49 Aligned_cols=136 Identities=29% Similarity=0.370 Sum_probs=94.8
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||+|||++|++||||+++. ..|+++|++|++||++|+||.+|
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~---------------------~~~~~~f~~i~~Ay~~L~~~~kr 62 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE---------------------PDAEARFKEVAEAWEVLSDEQRR 62 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHhhhHHHH
Confidence 489999999999999999999999999999999641 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.++...... +.+..........+.+. .....|..+|+.+. ...++|.++.+.+.|+|+|++.|++
T Consensus 63 ~~yD~~g~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~~ 136 (306)
T PRK10266 63 AEYDQLWQHRNDP----QFNRQFQHGDGQSFNAE--DFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHK 136 (306)
T ss_pred HHHHHhhccccCc----ccccccccCCCCCCCCC--CHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCce
Confidence 9999865311000 00000000000011111 11122444444321 1223578999999999999999999
Q ss_pred ceeeceee
Q 039706 1139 PFVTIREF 1146 (1166)
Q Consensus 1139 K~i~~~~~ 1146 (1166)
+.|+++..
T Consensus 137 k~i~~~~~ 144 (306)
T PRK10266 137 RTISYNLP 144 (306)
T ss_pred EEEEEecc
Confidence 99988744
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-13 Score=160.68 Aligned_cols=283 Identities=19% Similarity=0.072 Sum_probs=221.6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhhhHHhHHHHHHH
Q 039706 623 RMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV-CVDQKIAVEASDGLQKAQKVSECMQR 701 (1166)
Q Consensus 623 ~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n-~~a~~~l~Ea~~~L~k~~~~~e~~~~ 701 (1166)
...++++.+++|++.+|+++.+.+.++.-|..+++.+.|+.+.++++++++.+ ...|. .
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~wh--------------------L 518 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWH--------------------L 518 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHH--------------------H
Confidence 46789999999999999999999999999999999999999999999996653 23232 2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcccc---------
Q 039706 702 SAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDAN--------- 772 (1166)
Q Consensus 702 a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~--------- 772 (1166)
+...+. ..+++.+|+...+.++.-.|++......+..+-...++.++|+..+...|.+...........
T Consensus 519 LALvlS--a~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk 596 (799)
T KOG4162|consen 519 LALVLS--AQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLK 596 (799)
T ss_pred HHHHHh--hhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhh
Confidence 222222 368888999999999999888888888888888888999999888888887765221110000
Q ss_pred ---Cccc----------------------------ccCccch----hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 773 ---GQSM----------------------------ELDSSES----TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 773 ---g~~l----------------------------~ld~~~~----~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
..+. .+....+ ....+.....|...+..+...+..++|..++.++
T Consensus 597 ~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 597 AGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred cccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 0000 0000000 0011111223456788888899999999999886
Q ss_pred hcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHH
Q 039706 818 ESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAI 897 (1166)
Q Consensus 818 l~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi 897 (1166)
... .+..+..++..|..+...|++.+|.+.|..|+.++ |.+..+...+|.++.+.|+..-|.
T Consensus 677 ~~~--------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld----P~hv~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 677 SKI--------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD----PDHVPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred Hhc--------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhCCcchHH
Confidence 322 23456778888999999999999999999999999 888899999999999999988888
Q ss_pred H--HHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 898 A--DCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 898 ~--~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
. .+..|++++|.+.++|+.+|.++..+|+.++|..+|+.|+++.+.++
T Consensus 739 ~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 739 KRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8 99999999999999999999999999999999999999999977653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=155.78 Aligned_cols=249 Identities=14% Similarity=0.051 Sum_probs=213.6
Q ss_pred HHH-HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 609 WRL-SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 609 ~ay-~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
|.| ..+|.||+++|-+.+|...++.+|+..| .++.+..|+.+|.+..+...|+..|...+..-|.+..-+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l-------- 293 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYL-------- 293 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhh--------
Confidence 444 5689999999999999999999999775 678999999999999999999999999999988753211
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.+.+..+...+++++|+++|..+++.+|.+.++...+|.-|+.-++.+-|+.+|+++|++.-.+++
T Consensus 294 --------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 294 --------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE 359 (478)
T ss_pred --------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence 111111224688999999999999999999999999999999999999999999999998765543
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
. ++++|.+.+..++++-++..|++++.... .....++.|+++|.
T Consensus 360 L-------------------------f~NigLCC~yaqQ~D~~L~sf~RAlstat-----------~~~~aaDvWYNlg~ 403 (478)
T KOG1129|consen 360 L-------------------------FCNIGLCCLYAQQIDLVLPSFQRALSTAT-----------QPGQAADVWYNLGF 403 (478)
T ss_pred H-------------------------HhhHHHHHHhhcchhhhHHHHHHHHhhcc-----------Ccchhhhhhhccce
Confidence 2 57899999999999999999999754221 12345788999999
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
++...|++.-|..+|+-||..+ +.+..++.|+|.+-.+.|+.++|..+++.|-.+.|+-.+..++++.+
T Consensus 404 vaV~iGD~nlA~rcfrlaL~~d----~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 404 VAVTIGDFNLAKRCFRLALTSD----AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred eEEeccchHHHHHHHHHHhccC----cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 9999999999999999999877 89999999999999999999999999999999999888777776544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=157.71 Aligned_cols=123 Identities=29% Similarity=0.473 Sum_probs=113.2
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
....++.++..|+-+++.++|.+|+..|++||+++ |.++..|+|+|.+|.++|+|+.|+++|+.||.+||.+.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~----P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay 152 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD----PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH
Confidence 34457788899999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhH
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAV 974 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~ 974 (1166)
.+||.+|+.+|+|++|+..|++||+++|.+.. ++..|+.|+..+.+.
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~-------------~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALELDPDNES-------------YKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhccCCCcHH-------------HHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999854 456688888777653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-12 Score=146.46 Aligned_cols=331 Identities=16% Similarity=0.051 Sum_probs=245.2
Q ss_pred CchhHHHhhhHHhhCcch--hHHHHHHHH--HhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039706 577 DRNSEVDRGQEIKQEPNL--ASAETIAAQ--EACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCH 652 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~--A~a~~~aAI--e~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~ly 652 (1166)
+..-+.+-.+....+|.. +.+-+.-|| .+|....|...+..--.-|..++-...+++|+..-|.....|++.|..+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 344444555555555543 233333333 3666677776666666778888888899999999999988999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHH-------------HHHHHhhcCCCHHHHHH
Q 039706 653 LALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRS-------------AQLLQNKTSNDAEIALG 719 (1166)
Q Consensus 653 l~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a-------------~~~l~~~~~gd~eeALe 719 (1166)
...|+...|...+.+|++.+|++...+.....+...-...+.+..++.++ ..+ .+.++..++|+.
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~--er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANL--ERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHH--HHHhhhHHHHHH
Confidence 99999999999999999999986554443333322222233333332222 111 234788999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHH
Q 039706 720 VIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFK 799 (1166)
Q Consensus 720 ~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ 799 (1166)
+++++|+..|....+|+++|.++..+++.+.|...|..-++..|...+. |.+++.
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL-------------------------WllLak 727 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL-------------------------WLLLAK 727 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH-------------------------HHHHHH
Confidence 9999999999999999999999999999999999999999999976553 456888
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-------
Q 039706 800 SYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES------- 872 (1166)
Q Consensus 800 ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~------- 872 (1166)
+--..|..-.|...++++... ++..+..|+..-..-++.|+.++|.....+||+--|.+
T Consensus 728 leEk~~~~~rAR~ildrarlk--------------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEa 793 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLK--------------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEA 793 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhc--------------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHH
Confidence 888889999999999998443 34445566666667778888888888888887754210
Q ss_pred -------------------CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 873 -------------------HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 873 -------------------~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
...++.+++..|..+....++++|.+.|.+|+.++|++.++|...-..+...|.-++-.+.
T Consensus 794 I~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred HHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 1224556667788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhhhHHhh
Q 039706 934 FHRLIALLTKQIEKS 948 (1166)
Q Consensus 934 yekALeL~P~~~e~~ 948 (1166)
|.++....|.+.+.|
T Consensus 874 ~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 874 LKKCETAEPTHGELW 888 (913)
T ss_pred HHHHhccCCCCCcHH
Confidence 888888888777766
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-12 Score=150.18 Aligned_cols=218 Identities=15% Similarity=0.094 Sum_probs=174.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG-EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG-d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~ 694 (1166)
.++...+++++|+..+.++|+++|.+..+|..++.++..+| ++++|+..+.++++.+|.+...+.....+...+
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l----- 119 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKL----- 119 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHc-----
Confidence 44777899999999999999999999999999999999999 689999999999999999755443322211111
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCc
Q 039706 695 VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQ 774 (1166)
Q Consensus 695 ~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~ 774 (1166)
....+++++.+++++|+++|.+..+|..++.++..+++|++|++++.++|+++|.+..+
T Consensus 120 ---------------~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA------ 178 (320)
T PLN02789 120 ---------------GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA------ 178 (320)
T ss_pred ---------------CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH------
Confidence 11124678999999999999999999999999999999999999999999999988654
Q ss_pred ccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCC
Q 039706 775 SMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGR 854 (1166)
Q Consensus 775 ~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~ 854 (1166)
|..++.++..+++. +. ....
T Consensus 179 -------------------W~~R~~vl~~~~~l--------------------------------------~~---~~~~ 198 (320)
T PLN02789 179 -------------------WNQRYFVITRSPLL--------------------------------------GG---LEAM 198 (320)
T ss_pred -------------------HHHHHHHHHhcccc--------------------------------------cc---cccc
Confidence 22233332222110 00 0012
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEM 923 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~ 923 (1166)
.++++++..++|.++ |.+..+|+.++.++.. +++..+|+..|.+++..+|....|+..|+.+|..
T Consensus 199 ~e~el~y~~~aI~~~----P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILAN----PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhC----CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 456788888999998 8899999999999988 5667889999999999999999999999999985
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-12 Score=139.32 Aligned_cols=276 Identities=14% Similarity=0.145 Sum_probs=207.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
|-.|.-++-..+.++|+..|..+++.+|...++++.||++|...|+.+.|+..-+..+ ..|+.....+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~---------- 107 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRL---------- 107 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHH----------
Confidence 4468888888999999999999999999999999999999999999999999876654 46664332222
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
......+..++ ..|-++.|...|...+.....-..++..+..+|....+|++||+..++.+++.+.....
T Consensus 108 ----lAl~qL~~Dym---~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~--- 177 (389)
T COG2956 108 ----LALQQLGRDYM---AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV--- 177 (389)
T ss_pred ----HHHHHHHHHHH---HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---
Confidence 22222333333 36889999999999887766777899999999999999999999999999987754221
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ 851 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~ 851 (1166)
. ....|+.++..+....+++.|+..+.+|+..++. .+.+-..+|.++..
T Consensus 178 ----------e-------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~--------------cvRAsi~lG~v~~~ 226 (389)
T COG2956 178 ----------E-------IAQFYCELAQQALASSDVDRARELLKKALQADKK--------------CVRASIILGRVELA 226 (389)
T ss_pred ----------H-------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc--------------ceehhhhhhHHHHh
Confidence 1 1123567888888888888888888887543332 33344456888888
Q ss_pred cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHH
Q 039706 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 852 ~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi 931 (1166)
.|+|+.|++.|+.+++.+ ....+.+.-.+..||.++|+.++.+..+.++.+..+. +.+...++.+-....-.++|.
T Consensus 227 ~g~y~~AV~~~e~v~eQn---~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq 302 (389)
T COG2956 227 KGDYQKAVEALERVLEQN---PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQ 302 (389)
T ss_pred ccchHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHH
Confidence 888888888888888876 2344567777788888888888888888888887765 445556666666666677777
Q ss_pred HHHHHHHHHhhh
Q 039706 932 SDFHRLIALLTK 943 (1166)
Q Consensus 932 ~~yekALeL~P~ 943 (1166)
.++.+-+...|.
T Consensus 303 ~~l~~Ql~r~Pt 314 (389)
T COG2956 303 AYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHhhCCc
Confidence 776666655444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-12 Score=143.09 Aligned_cols=319 Identities=18% Similarity=0.127 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCC--------chhHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS--GSD--------VCVDQ 679 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel--~P~--------n~~a~ 679 (1166)
.+.|.|..+.+.|+|+.||..|+.+++..|++..+ ++|-.|++..|+-++-.+.|.+.+.+ .|+ +..+.
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~-~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA-LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh-hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 46889999999999999999999999999987654 56788999999999999999999874 111 11122
Q ss_pred HHHHHHH--HHhhhHHhH-----HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHccCHH
Q 039706 680 KIAVEAS--DGLQKAQKV-----SECMQRSAQLLQNKTSNDAEIALGVIDEALFIS---SYSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 680 ~~l~Ea~--~~L~k~~~~-----~e~~~~a~~~l~~~~~gd~eeALe~lekALel~---P~~~~al~~lA~~y~~lGdye 749 (1166)
.++.++. ..|...++- ..++..+..++.-.-.-+|...-++.-+.++.. |-..++-..+|--|++.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2222221 112221111 111111111111001111111111111111111 122233444555555555555
Q ss_pred HHHHHHHHHHHhccCCCCC-ccccCcccccC-ccchhh-hhh---------hhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 750 EVIQLCEQTFHFAEKNSPP-LDANGQSMELD-SSESTK-HVS---------FRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a-~~~~g~~l~ld-~~~~~~-~~~---------~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
.|++.+.-.-+.+.....+ ..++..+.-+. +..... ..| +....+.+.|.+.+..|++++|.+.|+++
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 5555543322222111111 00000000000 000000 000 00111233455667788888888888887
Q ss_pred hcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHH
Q 039706 818 ESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAI 897 (1166)
Q Consensus 818 l~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi 897 (1166)
+ .....-..+++++|..+..+|++++|+++|-+.-.+- ..++.+++.+|.+|..+.+..+||
T Consensus 517 l--------------~ndasc~ealfniglt~e~~~~ldeald~f~klh~il----~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 517 L--------------NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL----LNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred H--------------cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhhCHHHHH
Confidence 3 3334456677888888888888888888888776655 567888888888888888888888
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 898 ADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 898 ~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
+++.++..+-|+++..+..||.+|-..|+..+|.+++-.....+|-+++.
T Consensus 579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ 628 (840)
T KOG2003|consen 579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET 628 (840)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence 88888888888888888888888888888888888888888888887763
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-14 Score=162.03 Aligned_cols=233 Identities=18% Similarity=0.114 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
++.+|..+|.....+++++.|+..|++++..++..+..+.+++.+ +..+++++|+..++++.+..++. .
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-~--------- 111 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-R--------- 111 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc-c---------
Confidence 345567789999999999999999999999999999999999999 79999999999999887755431 1
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS--SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~--P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
.+..+... ....++++++...++++.... +.++.++..+|.++...|++++|+.+|++++++.|+
T Consensus 112 -----------~l~~~l~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 112 -----------YLLSALQL--YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp -----------------H---HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred -----------hhhHHHHH--HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 11111111 124689999999999977655 678899999999999999999999999999999997
Q ss_pred CCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhh
Q 039706 765 NSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKS 844 (1166)
Q Consensus 765 n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~ 844 (1166)
+... ...++.++...|+++++...+....... +.....+..
T Consensus 179 ~~~~-------------------------~~~l~~~li~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~ 219 (280)
T PF13429_consen 179 DPDA-------------------------RNALAWLLIDMGDYDEAREALKRLLKAA--------------PDDPDLWDA 219 (280)
T ss_dssp -HHH-------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHH---------------HTSCCHCHH
T ss_pred CHHH-------------------------HHHHHHHHHHCCChHHHHHHHHHHHHHC--------------cCHHHHHHH
Confidence 6432 2346677888899999777777642211 122234556
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
+|.++...|++++|+.+|++++..+ |.++..+..+|.++...|+.++|...+.+++..
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~----p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLN----PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHS----TT-HHHHHHHHHHHT------------------
T ss_pred HHHHhcccccccccccccccccccc----ccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999988 999999999999999999999999999998753
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-13 Score=157.02 Aligned_cols=228 Identities=14% Similarity=0.109 Sum_probs=158.5
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG 656 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG 656 (1166)
...|..-+-.+++++|.++.+... +|.++...++-..||..++++++++|++.+++..||..|...|
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~-------------LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQK-------------LGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHH-------------hhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 467777788888888887766666 8999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC--ChHHH
Q 039706 657 EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS--YSEKL 734 (1166)
Q Consensus 657 d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P--~~~~a 734 (1166)
.-.+|+.++.+-|...|........-.+ ......... .....+..-.+.|-.|....| .++++
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~--~~~~~~~s~-------------~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGEN--EDFENTKSF-------------LDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCcc--ccccCCcCC-------------CCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 9999999999999887763110000000 000000000 000001111222223333333 34444
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 039706 735 LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAAL 814 (1166)
Q Consensus 735 l~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~l 814 (1166)
+..||.+|...++|++|+.+|+.||...|+
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pn-------------------------------------------------- 462 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPN-------------------------------------------------- 462 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCc--------------------------------------------------
Confidence 444444444444444444444444444443
Q ss_pred HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchh
Q 039706 815 ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHIT 894 (1166)
Q Consensus 815 ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~e 894 (1166)
+...|..+|-.+....+.++||..|++||++. |....++||+|.+++.+|.|+
T Consensus 463 -----------------------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq----P~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 463 -----------------------DYLLWNRLGATLANGNRSEEAISAYNRALQLQ----PGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred -----------------------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC----CCeeeeehhhhhhhhhhhhHH
Confidence 34446666888888889999999999999988 999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 039706 895 DAIADCNLAIALDGN 909 (1166)
Q Consensus 895 eAi~~lekALeldP~ 909 (1166)
+|+.+|-.||.+.+.
T Consensus 516 EA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999998654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=139.87 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHH
Q 039706 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEA 810 (1166)
Q Consensus 731 ~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeA 810 (1166)
....+..+|.++...|++++|+..+++++...|.+.. .+..+|.+|...|++++|
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------------------------~~~~la~~~~~~~~~~~A 84 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL-------------------------AYLALALYYQQLGELEKA 84 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH-------------------------HHHHHHHHHHHcCCHHHH
Confidence 3577888999999999999999999999888765422 145688899999999999
Q ss_pred HHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh
Q 039706 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 811 l~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l 890 (1166)
+..+++++...+. ....+..+|..+...|++++|+..|.+++... ..+.....+.++|.++...
T Consensus 85 ~~~~~~al~~~~~--------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 85 EDSFRRALTLNPN--------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--LYPQPARSLENAGLCALKA 148 (234)
T ss_pred HHHHHHHHhhCCC--------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHc
Confidence 9999987543332 23456677999999999999999999999753 1245567889999999999
Q ss_pred hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
|++++|+..|.+++..+|.+..++..+|.++...|++++|+..+++++.+.|...
T Consensus 149 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 203 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203 (234)
T ss_pred CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999999999999999865543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.5e-13 Score=147.71 Aligned_cols=294 Identities=17% Similarity=0.145 Sum_probs=204.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDFL----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
-|.-++++|++...+..|+.||+.-.++. ..|.+||++|+.+++|++|+++-..-|.+... +-..+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~----------lgdkl 92 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL----------LGDKL 92 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH----------hcchh
Confidence 58889999999999999999999887663 57889999999999999999986543332110 00011
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHccCH-------------HH
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS------YSEKLLEMKAEALFMLRKY-------------EE 750 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P------~~~~al~~lA~~y~~lGdy-------------ee 750 (1166)
.. +. .-..++..+. -.|.|++|+.+..+-|.+.- ....+++++|.+|...|+. ++
T Consensus 93 GE---AK-ssgNLGNtlK--v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~e 166 (639)
T KOG1130|consen 93 GE---AK-SSGNLGNTLK--VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAE 166 (639)
T ss_pred cc---cc-ccccccchhh--hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHH
Confidence 11 00 1111111221 36888899888777765542 2347889999999988752 33
Q ss_pred HHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhh
Q 039706 751 VIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLI 830 (1166)
Q Consensus 751 Ai~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~ 830 (1166)
+...++.+++....+......++ .-......|-.||..|+.+|+|+.|+..-+.- ++.+.
T Consensus 167 v~~al~~Av~fy~eNL~l~~~lg------------Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~R--------L~ia~ 226 (639)
T KOG1130|consen 167 VTSALENAVKFYMENLELSEKLG------------DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLR--------LEIAQ 226 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh------------hHHhhcchhcccCceeeeeccHHHHHHHHHHH--------HHHHH
Confidence 44444444443322211000000 00111123456888999999999999988763 23333
Q ss_pred hhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC
Q 039706 831 PLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 831 ~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP 908 (1166)
+.......-.++-++|+++.-.|+++.|+++|..++.+.. ......+..-|.+|.+|.-+.++++||.++.+-|.+..
T Consensus 227 efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 227 EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556778899999999999999999999877653 34455677778899999999999999999999887742
Q ss_pred ------ChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 909 ------NYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 909 ------~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
....+++.||.+|-.+|..++|+...++.+++..+
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999887543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-11 Score=142.98 Aligned_cols=376 Identities=15% Similarity=0.056 Sum_probs=231.7
Q ss_pred CcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 591 EPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 591 ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
+|+.+..-+..|++.|+...- +=.+|..+.-|..|...+++|-+.=|.....|...|.+-...|+.+.-...+.+++.
T Consensus 391 ~~~darilL~rAveccp~s~d--LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~ 468 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMD--LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLS 468 (913)
T ss_pred ChHHHHHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456666777788888887532 223455667788888888888888888888888888888888888887777777765
Q ss_pred c-CCC-chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHH------------------HhhcCCCHHHHHHHHHHHHHhCCC
Q 039706 671 S-GSD-VCVDQKIAVEASDGLQKAQKVSECMQRSAQLL------------------QNKTSNDAEIALGVIDEALFISSY 730 (1166)
Q Consensus 671 l-~P~-n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l------------------~~~~~gd~eeALe~lekALel~P~ 730 (1166)
. ..+ ....+..+..-.........+..|.......+ .....+.++-|+..|..+|+..|.
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~ 548 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC 548 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc
Confidence 2 111 11111111111111111111111111111000 012356677888888888888888
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHH
Q 039706 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEA 810 (1166)
Q Consensus 731 ~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeA 810 (1166)
...+|...+..--.-|..++-..++++++...|..... |.+.+..+...|+...|
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~l-------------------------wlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEIL-------------------------WLMYAKEKWKAGDVPAA 603 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhH-------------------------HHHHHHHHHhcCCcHHH
Confidence 88888888777777888888888888888887754321 34567777888888888
Q ss_pred HHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh
Q 039706 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 811 l~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l 890 (1166)
+..+.++.+..++ ....++..-.+.+...+++.|..+|.+|.... ....+|+.-+.....+
T Consensus 604 r~il~~af~~~pn--------------seeiwlaavKle~en~e~eraR~llakar~~s-----gTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 604 RVILDQAFEANPN--------------SEEIWLAAVKLEFENDELERARDLLAKARSIS-----GTERVWMKSANLERYL 664 (913)
T ss_pred HHHHHHHHHhCCC--------------cHHHHHHHHHHhhccccHHHHHHHHHHHhccC-----CcchhhHHHhHHHHHh
Confidence 8888887443333 23334444555666777777777777776543 3445677777777777
Q ss_pred hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhh
Q 039706 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMR 970 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~ 970 (1166)
+..++|+..|+++|+..|++.+.|+.+|+++..+++.+.|...|...++..|.....|.-.... .+....+-+|+.-
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl---eEk~~~~~rAR~i 741 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL---EEKDGQLVRARSI 741 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH---HHHhcchhhHHHH
Confidence 7777777777777777777777777777777777777777777777777777766555322221 1222334455554
Q ss_pred hhhHHhhhhccCccchhhhcccCCCCCHHHHHHHHHHHHhccCCCC
Q 039706 971 LTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDK 1016 (1166)
Q Consensus 971 Lk~~e~~~rk~~~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK 1016 (1166)
|....-... ....-|.+.+.+...++-.++.+.....||+-.|.-
T Consensus 742 ldrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 742 LDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 443321111 112223333333333444455555555666655543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=147.62 Aligned_cols=256 Identities=15% Similarity=0.014 Sum_probs=190.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFL-RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~-~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+...|.++..+|+++.|..++.++++..|+.. .+...++.+++..|+++.|+..++++++..|+++.....+..++...
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 44467888888999999999999988888875 46666788999999999999999999999898887777777777777
Q ss_pred hhHHhHHHHHHHHHHHH----------------HhhcCCCHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHccCHH
Q 039706 690 QKAQKVSECMQRSAQLL----------------QNKTSNDAEIALGVIDEALFISS----YSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l----------------~~~~~gd~eeALe~lekALel~P----~~~~al~~lA~~y~~lGdye 749 (1166)
++...+...+..+.... .....+..++++..+.++....| +++.++..+|..+...|+++
T Consensus 201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 76665554443332110 00112223344557777777777 58899999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 750 EVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
+|+..++++++..|++.... + ...........++.+.+++.+++++...++.
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~---------------------~--~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~----- 332 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAIS---------------------L--PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK----- 332 (409)
T ss_pred HHHHHHHHHHhhCCCcccch---------------------h--HHHHHhhhcCCCChHHHHHHHHHHHHhCCCC-----
Confidence 99999999999988764320 0 0112233344678888999998875443331
Q ss_pred hhhccchHHHHHHhhhhHHHHHcCChHHHHHHHH--HHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYT--AALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~--kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
..+..+..+|.++++.|+|++|.++|+ .+++.. |.... +..+|.++.++|+.++|..++++++.+
T Consensus 333 -------~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~----p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 333 -------PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ----LDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred -------hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC----CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112566678999999999999999999 566665 55544 558999999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-12 Score=135.27 Aligned_cols=203 Identities=16% Similarity=0.017 Sum_probs=167.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 703 AQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 703 ~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
...+.+...|++..|...+++||+.+|.+..+|..+|.+|..+|+.+.|-+.|++++.++|++...
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV-------------- 105 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV-------------- 105 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch--------------
Confidence 334445568999999999999999999999999999999999999999999999999999987654
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
+.+.|..++.+|++++|...|++|+....- ......+.++|.+.++.|+++.|.++|
T Consensus 106 -----------LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y------------~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 106 -----------LNNYGAFLCAQGRPEEAMQQFERALADPAY------------GEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred -----------hhhhhHHHHhCCChHHHHHHHHHHHhCCCC------------CCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 355677788899999999999987543221 123455677888899999999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 863 TAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
+++|+++ |..+.....++..++..|+|..|..++++....-+-.+..+.....+-..+||-+.|-.+=.+...++|
T Consensus 163 ~raL~~d----p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 163 KRALELD----PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHhC----cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999888 777778888888899999999999999888887777777777777788888888888888888888888
Q ss_pred hhHH
Q 039706 943 KQIE 946 (1166)
Q Consensus 943 ~~~e 946 (1166)
...+
T Consensus 239 ~s~e 242 (250)
T COG3063 239 YSEE 242 (250)
T ss_pred CcHH
Confidence 7655
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-10 Score=135.37 Aligned_cols=298 Identities=14% Similarity=-0.032 Sum_probs=191.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH---HHHHH
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI---AVEAS 686 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~---l~Ea~ 686 (1166)
.+|..|...|++..|...+.++....|.. .+..+..|.++...|++++|...++++++..|.+...... +....
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~ 90 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLG 90 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhc
Confidence 36777777788888888888877777644 4566677788888888888888888888888876544331 00000
Q ss_pred HHhhhHHhHHH------------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 687 DGLQKAQKVSE------------CMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 687 ~~L~k~~~~~e------------~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
........... .+............|++++|+..+++++++.|.++.++..+|.+|+..|++++|+..
T Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 91 DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 00000011111 111112222334689999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
+++++...|..+.. ....+..++.++...|++++|+..|+++....+...
T Consensus 171 l~~~l~~~~~~~~~---------------------~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~--------- 220 (355)
T cd05804 171 MESWRDTWDCSSML---------------------RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESD--------- 220 (355)
T ss_pred HHhhhhccCCCcch---------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCC---------
Confidence 99999887742211 011234689999999999999999999744332100
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc-c-CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC---
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV-E-SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN--- 909 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~-e-~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~--- 909 (1166)
..........+...+...|....+..+ +.+..... . ..+........++.++...|+.++|...++......-.
T Consensus 221 ~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 299 (355)
T cd05804 221 PALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD 299 (355)
T ss_pred hHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc
Confidence 000000000111122233322222221 11111100 0 00222233346888899999999999999887664322
Q ss_pred ------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 910 ------YLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 910 ------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
...+...+|.++...|++++|+..+..++.+.
T Consensus 300 ~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 300 NKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999875
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8e-11 Score=139.74 Aligned_cols=247 Identities=15% Similarity=0.026 Sum_probs=186.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhH
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDFLR-VQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKA 692 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~~~-A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~ 692 (1166)
-|.+....|+++.|..+|.++.+.+|+... .....+.++...|++++|+..++++++..|+++.....+..++...++.
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence 355558999999999999999999998854 4455699999999999999999999999999988888888887777776
Q ss_pred HhHHHHHHHHHHHHH--------------------hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHH
Q 039706 693 QKVSECMQRSAQLLQ--------------------NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVI 752 (1166)
Q Consensus 693 ~~~~e~~~~a~~~l~--------------------~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi 752 (1166)
..+...+..+..... .....+.+.....++..-...|+++.++..+|..+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 666544433322110 001122223333333333445678999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 753 QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 753 ~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
..++++++..+ ++. ..+.......++.+++++.+++.+.
T Consensus 284 ~~L~~~l~~~~-~~~---------------------------l~~l~~~l~~~~~~~al~~~e~~lk------------- 322 (398)
T PRK10747 284 QIILDGLKRQY-DER---------------------------LVLLIPRLKTNNPEQLEKVLRQQIK------------- 322 (398)
T ss_pred HHHHHHHhcCC-CHH---------------------------HHHHHhhccCCChHHHHHHHHHHHh-------------
Confidence 99999998433 211 0112223345999999999998743
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
..+.+...+..+|..+...++|.+|.++|+++++.. |.... +..++.++.++|+.++|..+|++++.+.
T Consensus 323 -~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~----P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 323 -QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR----PDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344456677778999999999999999999999987 66544 5579999999999999999999998764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-10 Score=131.61 Aligned_cols=317 Identities=11% Similarity=0.084 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH-
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD- 687 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~- 687 (1166)
..-+..+.||...++-+.|+.....+.... ..+...+.+++.+-.-++..++.-.|...+...|--......+.+...
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 445678999999999999998876543321 346677888888888888778888888877766542111111111000
Q ss_pred HhhhH---------HhHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHH
Q 039706 688 GLQKA---------QKVSECMQRSAQLLQNK--TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCE 756 (1166)
Q Consensus 688 ~L~k~---------~~~~e~~~~a~~~l~~~--~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~le 756 (1166)
..... .....+...-..++... ....+.-+..++-+....-|++..++..+|.+++..|++.+|+..|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 00000 00001111111111111 12334455566666677789999999999999999999999999999
Q ss_pred HHHHhccCCCCCccccCcccccCcc--chhhhhh-------hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhh
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSS--ESTKHVS-------FRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLE 827 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~--~~~~~~~-------~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le 827 (1166)
++.-++|.+......++.++...+. ...+... .....|..-+..++...+++.|+.+-+++++.++
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~----- 331 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP----- 331 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-----
Confidence 9999999888776666555533222 1111100 0011234456778889999999999999854433
Q ss_pred hhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHH-----------
Q 039706 828 SLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA----------- 896 (1166)
Q Consensus 828 ~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeA----------- 896 (1166)
+....+...|..+...++.++|+-+|+.|+.+. |....+|..+-.+|+..|++.+|
T Consensus 332 ---------r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La----p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 332 ---------RNHEALILKGRLLIALERHTQAVIAFRTAQMLA----PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred ---------ccchHHHhccHHHHhccchHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 345566677999999999999999999999988 88888998888888888776655
Q ss_pred -------------------------HHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 897 -------------------------IADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 897 -------------------------i~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
...++++|.+.|.+..|...+|.++...|.+++++..+++++..+|+.
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 445667777788899999999999999999999999999999887765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.5e-11 Score=142.20 Aligned_cols=211 Identities=16% Similarity=0.115 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHH
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWR 793 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr 793 (1166)
..+++..+++|++.+|.++.+.+.++.-|..+++.+.|++++++++++++..... .
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~----------------------~-- 515 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK----------------------A-- 515 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH----------------------H--
Confidence 4678888888888899888888888888888899999999999888886544221 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCc-------------------hhhhh-------------------------
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGK-------------------MLESL------------------------- 829 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k-------------------~le~a------------------------- 829 (1166)
|.+++.++...+++.+|+.....++...+.+ .+..+
T Consensus 516 whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~l 595 (799)
T KOG4162|consen 516 WHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRL 595 (799)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhh
Confidence 3446666666666666666555544322210 00000
Q ss_pred ---------------------hhhc-------------------cc-----hHHHHHHhhhhHHHHHcCChHHHHHHHHH
Q 039706 830 ---------------------IPLA-------------------GT-----VRELLCRKSAGNEAFQAGRHSEAVEHYTA 864 (1166)
Q Consensus 830 ---------------------~~L~-------------------~~-----~~~a~~l~~lG~~~~~~G~yeEAie~y~k 864 (1166)
..+. +. ......|...+..+...+.-++|..++.+
T Consensus 596 k~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 596 KAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred hcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 0000 00 00122344567788888888999999999
Q ss_pred HHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHH--HHHHHHHHhh
Q 039706 865 ALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAAS--DFHRLIALLT 942 (1166)
Q Consensus 865 ALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~--~yekALeL~P 942 (1166)
|-.+. +..+..|+.+|.++...|++.+|.+.|..|+.++|+++.+...+|.+|...|+..-|.. .+..+++++|
T Consensus 676 a~~~~----~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 676 ASKID----PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHhcc----hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 99888 89999999999999999999999999999999999999999999999999999888887 9999999999
Q ss_pred hhHHhhccCC
Q 039706 943 KQIEKSNQSG 952 (1166)
Q Consensus 943 ~~~e~~~~~~ 952 (1166)
.+.+.|...|
T Consensus 752 ~n~eaW~~LG 761 (799)
T KOG4162|consen 752 LNHEAWYYLG 761 (799)
T ss_pred CCHHHHHHHH
Confidence 9999996554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-11 Score=129.22 Aligned_cols=205 Identities=16% Similarity=0.020 Sum_probs=152.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
...+|..|+..|++..|...+++||+.||++..+|..+|.+|..+|+.+.|.+.|++|+.++|+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---------------- 101 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN---------------- 101 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----------------
Confidence 4568999999999999999999999999999999999999999999999999999988776665
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
+.+++.+.|..++.+|+|++|...|++++.. |.....
T Consensus 102 ----------------------------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~-- 138 (250)
T COG3063 102 ----------------------------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEP-- 138 (250)
T ss_pred ----------------------------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCc--
Confidence 4456677777777777888888777777743 322211
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
...+.++|.|.++.|+++.|..+|++++..++. .......++..++
T Consensus 139 --------------------s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~--------------~~~~~l~~a~~~~ 184 (250)
T COG3063 139 --------------------SDTLENLGLCALKAGQFDQAEEYLKRALELDPQ--------------FPPALLELARLHY 184 (250)
T ss_pred --------------------chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC--------------CChHHHHHHHHHH
Confidence 112455777777778888888888777544443 2344555677888
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
..|+|..|..++++...-. +..+..+.....+-..+|+-+.|-.+=.+.-.+.|...+
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~----~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 185 KAGDYAPARLYLERYQQRG----GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hcccchHHHHHHHHHHhcc----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 8888888888888876644 444555554555666778887777777777777776554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-11 Score=133.14 Aligned_cols=69 Identities=13% Similarity=0.015 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFL---RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~---~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~ 676 (1166)
...++++|..++..|++++|+..|++++..+|.+. .+++.+|.+|..+|++++|+..|+++++..|++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 34567889999999999999999999999998765 6789999999999999999999999988888743
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-12 Score=143.81 Aligned_cols=191 Identities=10% Similarity=-0.014 Sum_probs=159.0
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR-KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG-dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
.+.+++|+..+.++|.++|.+..+|..++.++..++ ++++|+..+.+++..+|++..+
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa--------------------- 108 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI--------------------- 108 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH---------------------
Confidence 578899999999999999999999999999999999 6899999999999999987554
Q ss_pred hhHHHHHHHHHHHHcCCH--HHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 790 RLWRCCLIFKSYFTLGRL--EEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~--eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
|...+.++..+++. ++++.++.+++. ..++...+|..++.++...++|++|+++++++|+
T Consensus 109 ----W~~R~~~l~~l~~~~~~~el~~~~kal~--------------~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 109 ----WHHRRWLAEKLGPDAANKELEFTRKILS--------------LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred ----hHHHHHHHHHcCchhhHHHHHHHHHHHH--------------hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23345555666653 678888888743 3444566777789999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHh---hch----hHHHHHHHHHHHhCCChHHHHHHHHHHHHH----hhCHHHHHHHHHH
Q 039706 868 CTVESHPFAAICFCNRAAAYKAL---RHI----TDAIADCNLAIALDGNYLKAISRRATLYEM----IRDYDHAASDFHR 936 (1166)
Q Consensus 868 l~~e~~p~~a~a~~nlA~ay~~l---Gq~----eeAi~~lekALeldP~~~~A~~~LA~ay~~----lGdyeeAi~~yek 936 (1166)
++ +.+..+|+.++.++..+ +.+ ++++.++.++|.++|++..+|..++.++.. ++...+|+..+.+
T Consensus 171 ~d----~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 171 ED----VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HC----CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 98 88999999999998876 333 478899999999999999999999999987 5567788888888
Q ss_pred HHHHhhhh
Q 039706 937 LIALLTKQ 944 (1166)
Q Consensus 937 ALeL~P~~ 944 (1166)
++...|+.
T Consensus 247 ~~~~~~~s 254 (320)
T PLN02789 247 VLSKDSNH 254 (320)
T ss_pred hhcccCCc
Confidence 77654443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-11 Score=151.46 Aligned_cols=247 Identities=14% Similarity=0.064 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..++..+...|...+++++|+..|+.+++..|+...+|+.+|.++++.+++.+|... .++.+-+.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~------------- 95 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ------------- 95 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc-------------
Confidence 356788899999999999999999999999999999999999999999998888776 55554333
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
..+| .+++++...+...+.+..+++.+|.||-.+|++++|+..|+++|+++|+++.
T Consensus 96 -----------------------~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~ 151 (906)
T PRK14720 96 -----------------------NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE 151 (906)
T ss_pred -----------------------ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH
Confidence 2344 5666666667677888889999999999999999999999999999988765
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
+ +.++|..|... ++++|+.++.+| ..
T Consensus 152 a-------------------------LNn~AY~~ae~-dL~KA~~m~~KA----------------------------V~ 177 (906)
T PRK14720 152 I-------------------------VKKLATSYEEE-DKEKAITYLKKA----------------------------IY 177 (906)
T ss_pred H-------------------------HHHHHHHHHHh-hHHHHHHHHHHH----------------------------HH
Confidence 4 45677788888 999999999987 22
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCc----------------hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHP----------------FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p----------------~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
.++..++|.++.+++.+.+..++..-. ....++.-+=.+|...++|++++..+..+|+++|.+.
T Consensus 178 ~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 178 RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence 356677888888888888877632111 1122333344788899999999999999999999999
Q ss_pred HHHHHHHHHHHHh--------------------hCHHHHHHHHHHHHHHhhhhHHh
Q 039706 912 KAISRRATLYEMI--------------------RDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 912 ~A~~~LA~ay~~l--------------------GdyeeAi~~yekALeL~P~~~e~ 947 (1166)
.+...++.+|... ..+..|+..|++.+.+.+.+.-.
T Consensus 258 ~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~ 313 (906)
T PRK14720 258 KAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNFVY 313 (906)
T ss_pred hhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCEEE
Confidence 9999999999743 24567777777777777766543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-11 Score=147.11 Aligned_cols=324 Identities=12% Similarity=-0.009 Sum_probs=225.1
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHH
Q 039706 620 ALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECM 699 (1166)
Q Consensus 620 ~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~ 699 (1166)
...+...|+..|-++++++|..+.++..||.+|...-+...|.++|.+|.++++.+..+.....+.+......+.+....
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34458899999999999999999999999999999999999999999999999998877777766666555554443321
Q ss_pred HHHH--------------HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 700 QRSA--------------QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 700 ~~a~--------------~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
.... +...+...++..+|+..++.|+..+|.+...|..+|++|...|+|..|+..+.++..++|..
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 1111 11113457889999999999999999999999999999999999999999999999999865
Q ss_pred CCCccccCcccccCccc-hh------hhhh----------hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------CC
Q 039706 766 SPPLDANGQSMELDSSE-ST------KHVS----------FRLWRCCLIFKSYFTLGRLEEAIAALERHES-------GN 821 (1166)
Q Consensus 766 ~~a~~~~g~~l~ld~~~-~~------~~~~----------~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~-------~~ 821 (1166)
.....-.. +++-+... .. ..++ -....+.+++..++..|=+.+|...+++.+. ..
T Consensus 630 ~y~~fk~A-~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 KYGRFKEA-VMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred HHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 32210000 00000000 00 0000 0011122333444444444444444444322 00
Q ss_pred ----------------------CCch----hhhhhh-------h----------------ccchHHHHHHhhhhHHHHH-
Q 039706 822 ----------------------GGKM----LESLIP-------L----------------AGTVRELLCRKSAGNEAFQ- 851 (1166)
Q Consensus 822 ----------------------~~k~----le~a~~-------L----------------~~~~~~a~~l~~lG~~~~~- 851 (1166)
++.. +..... + .........|+++|..|++
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 0000 000000 0 0000112345677766665
Q ss_pred -------cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 852 -------AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 852 -------~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
..+-..|+.++.+++++. ..+...|..+|.+ ...|.+.-|..+|-+++.+.|....+|.++|.++...
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~----ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLC----ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHh----hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 223357899999999887 7788889989888 6668899999999999999999999999999999999
Q ss_pred hCHHHHHHHHHHHHHHhhhhHHhhc
Q 039706 925 RDYDHAASDFHRLIALLTKQIEKSN 949 (1166)
Q Consensus 925 GdyeeAi~~yekALeL~P~~~e~~~ 949 (1166)
.|++.|...|.++..++|.+...|.
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~Wl 888 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWL 888 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHH
Confidence 9999999999999999999988773
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=137.98 Aligned_cols=280 Identities=15% Similarity=0.081 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+++.++.-.+..++|.+.+..++.+|+-.|.+++.+...|..+..+|+-++|..+...++..++.+...|..+.-
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl---- 83 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL---- 83 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH----
Confidence 4578899999999999999999999999999999999999999999999999999999999999987776655422
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
+ ++...+|.+||.+|..|+.+.|++..+|..++.+..++++|+-....-.+.+++.|.....
T Consensus 84 ----------------~--~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~ 145 (700)
T KOG1156|consen 84 ----------------L--QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS 145 (700)
T ss_pred ----------------H--HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH
Confidence 1 3457899999999999999999999999999999999999999999999999988754321
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
|...+.+++..|++..|+..++........ ..-..........+....+
T Consensus 146 -------------------------w~~~Avs~~L~g~y~~A~~il~ef~~t~~~------~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 146 -------------------------WIGFAVAQHLLGEYKMALEILEEFEKTQNT------SPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCCHHHHHHHHHHHHHHHH
Confidence 455788899999999999988875332210 0011122334455556778
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdye 928 (1166)
..+.|.+++|++.+..--..- -+........|..++.++++++|+..|...|..+|++...+..+-.++....+--
T Consensus 195 ~~E~g~~q~ale~L~~~e~~i----~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQI----VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHcccHHHHHHHHHhhhhHH----HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhH
Confidence 889999999988876643211 2334455668899999999999999999999999999999888877776444444
Q ss_pred HHH-HHHHHHHHHhhhhH
Q 039706 929 HAA-SDFHRLIALLTKQI 945 (1166)
Q Consensus 929 eAi-~~yekALeL~P~~~ 945 (1166)
+++ ..|...-+..|...
T Consensus 271 ~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHE 288 (700)
T ss_pred HHHHHHHHHHhhcCcccc
Confidence 555 56666555555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-10 Score=138.21 Aligned_cols=209 Identities=20% Similarity=0.134 Sum_probs=170.3
Q ss_pred cCCCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCcc
Q 039706 710 TSNDAEIALGVIDEALFI--------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSS 781 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel--------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~ 781 (1166)
.+|+|+.|+..++.|+++ .|.-...+..+|.+|..+++|.+|+.+|+++|.+....... +..
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~----------~h~ 280 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE----------DHP 280 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC----------CCH
Confidence 589999999999999998 56666667779999999999999999999999886543221 111
Q ss_pred chhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHH
Q 039706 782 ESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEH 861 (1166)
Q Consensus 782 ~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~ 861 (1166)
..+..+..||.+|+..|++++|..++++|+..... ............+.+++.++...+++++|+.+
T Consensus 281 -------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~------~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 281 -------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK------LLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred -------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH------hhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 11233577999999999999999999998542211 11233445566778889999999999999999
Q ss_pred HHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--------CChHHHHHHHHHHHHHhhCHHH
Q 039706 862 YTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD--------GNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 862 y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--------P~~~~A~~~LA~ay~~lGdyee 929 (1166)
|++++++.. ..++..+..+.++|.+|+.+|+|.+|.+.|++||.+. +.....+..+|..|..++++.+
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 999998753 3445678899999999999999999999999999874 3446788899999999999999
Q ss_pred HHHHHHHHHHHh
Q 039706 930 AASDFHRLIALL 941 (1166)
Q Consensus 930 Ai~~yekALeL~ 941 (1166)
|...|.+++.+.
T Consensus 428 a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 428 AEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHHHH
Confidence 999999999987
|
|
| >KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-13 Score=142.99 Aligned_cols=70 Identities=47% Similarity=0.763 Sum_probs=64.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..++|.+||++++++.++||++||++++++|||+++.. +++.++|++|++||+||+||.+
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~--------------------P~~~dkf~eIN~Ay~ILsD~~k 89 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN--------------------PEATDKFKEINTAYAILSDPTK 89 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC--------------------chhHHHHHHHHHHHHHhcChhh
Confidence 46899999999999999999999999999999998742 4688999999999999999999
Q ss_pred hcccchhhhh
Q 039706 1063 RSRYDLEEET 1072 (1166)
Q Consensus 1063 R~~YD~~~~~ 1072 (1166)
|..||.++..
T Consensus 90 R~~YD~~g~~ 99 (279)
T KOG0716|consen 90 RNVYDEYGEL 99 (279)
T ss_pred hhhHHHhhhH
Confidence 9999997653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-10 Score=125.83 Aligned_cols=202 Identities=13% Similarity=0.050 Sum_probs=169.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
..+.++|+..|-..++.+|...++++.+|.++...|..+.||.+-+..+. .|+... ..+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~--------------------~qr 106 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTF--------------------EQR 106 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCch--------------------HHH
Confidence 68889999999999999999999999999999999999999999776653 343221 123
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
...+..||.-|+..|-++.|...|....+. ..-...++..+-.+|....+|++||+..++...+.+
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 344577999999999999999999885221 111233455668899999999999999999998874
Q ss_pred c-CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 871 E-SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 871 e-~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
. ..-.-+..||.+|..+....+.+.|+..+.+|++.+|+...|-..+|.++...|+|++|++.|+.+++.+|+-...
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH
Confidence 2 3345678999999999999999999999999999999999999999999999999999999999999998887653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-10 Score=132.13 Aligned_cols=308 Identities=18% Similarity=0.080 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
.+.-.|..+..+|+-++|...+..++..|+...-.|.-+|.++....+|++|+++|+.|+.++|+|..-+..+.-+..+
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q- 121 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ- 121 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-
Confidence 3444899999999999999999999999999999999999999999999999999999999999986544433322222
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
.++++-....-.+.+++.|.....|...|.++...|+|..|+..++...+.....+...
T Consensus 122 ---------------------mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~ 180 (700)
T KOG1156|consen 122 ---------------------MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKE 180 (700)
T ss_pred ---------------------HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH
Confidence 35555566666677788888888888888888888888888888777766553222211
Q ss_pred cccC--------cc-cccCccc--------hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 770 DANG--------QS-MELDSSE--------STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 770 ~~~g--------~~-l~ld~~~--------~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
.... .. ......+ ......-.+......+.+++.++++++|+..|...+...|+ ....
T Consensus 181 ~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-----n~~Y 255 (700)
T KOG1156|consen 181 DYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-----NLDY 255 (700)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-----hHHH
Confidence 0000 00 0000000 00001111122234677788888888888888886444443 1111
Q ss_pred ccchHHHHH-HhhhhHH----H--------------------HHcCChHHHHH---------------------------
Q 039706 833 AGTVRELLC-RKSAGNE----A--------------------FQAGRHSEAVE--------------------------- 860 (1166)
Q Consensus 833 ~~~~~~a~~-l~~lG~~----~--------------------~~~G~yeEAie--------------------------- 860 (1166)
+.....+.- ....+.. | ..-.++.+.+.
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k 335 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK 335 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH
Confidence 111111110 0000000 0 00001111111
Q ss_pred --HHHHH-------Hhccc----------cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 861 --HYTAA-------LSCTV----------ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 861 --~y~kA-------Lel~~----------e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
..++. +.-.. +....-.++++.++.-|..+|+++.|..+++.||..-|+.++.|...|.++
T Consensus 336 ~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~ 415 (700)
T KOG1156|consen 336 VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIF 415 (700)
T ss_pred hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 11111 10000 011122455667888899999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHhhhh
Q 039706 922 EMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 922 ~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
...|++++|...+.++.+++-.+
T Consensus 416 kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 416 KHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HhcCChHHHHHHHHHHHhccchh
Confidence 99999999999999998886554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-09 Score=132.53 Aligned_cols=309 Identities=18% Similarity=0.085 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
.+..++.++...|++++|+..++.....-.+...++..+|.+|+.+|++++|...|...|..+|++..-...+..+....
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 34557888999999999999999988888888999999999999999999999999999999999876655555543111
Q ss_pred h-----hHHhHHHHHHHHHHHHH----------hhcC-CCHHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHH
Q 039706 690 Q-----KAQKVSECMQRSAQLLQ----------NKTS-NDAEIA-LGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVI 752 (1166)
Q Consensus 690 ~-----k~~~~~e~~~~a~~~l~----------~~~~-gd~eeA-Le~lekALel~P~~~~al~~lA~~y~~lGdyeeAi 752 (1166)
. ........+......+. .... ..+... -.++...|.. .-|.+...+-.+|....+..-..
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHH
Confidence 1 11111222222111110 0001 123222 2333333332 23344444444444222222222
Q ss_pred HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 753 QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 753 ~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
.++...+......... -. ............+|.++.++..|...|++++|+.++++++..+|
T Consensus 164 ~l~~~~~~~l~~~~~~-------~~-~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP---------- 225 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSF-------SN-GDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP---------- 225 (517)
T ss_pred HHHHHHHHhhcccCCC-------CC-ccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC----------
Confidence 2333322211111000 00 00111223345679999999999999999999999999855444
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC---
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN--- 909 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~--- 909 (1166)
..++.+...|.++-..|++.+|.+.++.|-.++ ..+--+-...+..+++.|++++|+..+..-...+-+
T Consensus 226 ----t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD----~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 226 ----TLVELYMTKARILKHAGDLKEAAEAMDEARELD----LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred ----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC----hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 456778888999999999999999999999998 666666666778888999999999999877655421
Q ss_pred ------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 910 ------YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 910 ------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.......-|.+|...|++..|+..|..+.+.+.+..+
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 1222344699999999999999999999988766544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-09 Score=139.08 Aligned_cols=290 Identities=10% Similarity=-0.028 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCchhHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDP-DFLRVQVRAANCHLALGEIEDASKYFRMCLQS--GSDVCVDQKIAVEA 685 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP-~~~~A~~~LA~lyl~lGd~eeAl~~fekALel--~P~n~~a~~~l~Ea 685 (1166)
..|..+..+|.+.|++++|+..|+++.+... -+...|..+...|.+.|++++|+..|...... .|+ ...+..+..+
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a 551 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence 3455567778888888888888888876543 25677888888888888888888888877653 444 2223333333
Q ss_pred HHHhhhHHhHHHHHHHHH---------------HHHHhhcCCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHccCHH
Q 039706 686 SDGLQKAQKVSECMQRSA---------------QLLQNKTSNDAEIALGVIDEALFIS-SYSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~---------------~~l~~~~~gd~eeALe~lekALel~-P~~~~al~~lA~~y~~lGdye 749 (1166)
+........+...+.... .+..+.+.|++++|++.|+++.+.. +.+...|..+...|.+.|+++
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d 631 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Confidence 333222222222221111 0111335788888888888887765 345677778888888888888
Q ss_pred HHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 750 EVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
+|+.+|.+..+..- .+. ...|..+..+|...|++++|+.+++........
T Consensus 632 eAl~lf~eM~~~Gv---------------~PD---------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~------ 681 (1060)
T PLN03218 632 FALSIYDDMKKKGV---------------KPD---------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK------ 681 (1060)
T ss_pred HHHHHHHHHHHcCC---------------CCC---------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------
Confidence 88888887765421 011 112445667788888888888888876432111
Q ss_pred hhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--C
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--D 907 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--d 907 (1166)
.....+..+...|.+.|++++|++.|++..... . ..+...|..+...|.+.|++++|++.+++.... .
T Consensus 682 -------pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g--~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 682 -------LGTVSYSSLMGACSNAKNWKKALELYEDIKSIK--L-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred -------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 123456667888889999999999998886542 1 234567888888899999999999999987664 3
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
|+ ...|..+..++...|++++|...+.++++.
T Consensus 752 Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 752 PN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 54 456666778888899999999988888753
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=128.19 Aligned_cols=183 Identities=17% Similarity=0.036 Sum_probs=135.0
Q ss_pred hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCC
Q 039706 727 ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGR 806 (1166)
Q Consensus 727 l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd 806 (1166)
.++..+..++.+|..++..|++++|+..+++++...|.++.. ...++.+|.+|+..|+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----------------------~~a~~~la~~~~~~~~ 85 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA----------------------EQAQLDLAYAYYKSGD 85 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH----------------------HHHHHHHHHHHHhcCC
Confidence 344566788888888888888888888888888887754321 0113557888888888
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc--------CChHHHHHHHHHHHhccccCCchh-H
Q 039706 807 LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA--------GRHSEAVEHYTAALSCTVESHPFA-A 877 (1166)
Q Consensus 807 ~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~--------G~yeEAie~y~kALel~~e~~p~~-a 877 (1166)
+++|+..|++++...+... .....+..+|.+++.. +++++|++.|++++...|.+.... +
T Consensus 86 ~~~A~~~~~~~l~~~p~~~-----------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 154 (235)
T TIGR03302 86 YAEAIAAADRFIRLHPNHP-----------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA 154 (235)
T ss_pred HHHHHHHHHHHHHHCcCCC-----------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH
Confidence 8888888888755444311 1122455567777665 789999999999999874331110 0
Q ss_pred ------------HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 878 ------------ICFCNRAAAYKALRHITDAIADCNLAIALDGN---YLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 878 ------------~a~~nlA~ay~~lGq~eeAi~~lekALeldP~---~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
.....+|.+|...|++.+|+..|++++...|+ .+.+++.+|.+|..+|++++|+.+++.+....|
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11246788999999999999999999999765 468999999999999999999999888776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-12 Score=147.76 Aligned_cols=72 Identities=38% Similarity=0.629 Sum_probs=67.1
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|+|+++|+.+||++|||++++-+||||+. .++.++.|+++|.+|.+||+||+||++|
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~-----------------dpd~K~~AE~~F~~i~~AyEVLsDp~kR 71 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT-----------------DPDQKKAAEEKFQRIQRAYEVLSDPQKR 71 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccC-----------------ChhHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 48999999999999999999999999999999985 3567899999999999999999999999
Q ss_pred cccchhhhh
Q 039706 1064 SRYDLEEET 1072 (1166)
Q Consensus 1064 ~~YD~~~~~ 1072 (1166)
.+||.+++.
T Consensus 72 aIYD~~G~q 80 (546)
T KOG0718|consen 72 AIYDNYGEQ 80 (546)
T ss_pred HHHHHhhhc
Confidence 999997763
|
|
| >KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-12 Score=147.92 Aligned_cols=69 Identities=43% Similarity=0.714 Sum_probs=63.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
..||++|||.++++..+||++||++||+|||||++..+ ++|.++|+.|..||+|||||+.|
T Consensus 8 ~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~i-------------------eeat~~F~~i~aAYeVLSdp~eR 68 (508)
T KOG0717|consen 8 RCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRI-------------------EEATQQFQLIQAAYEVLSDPQER 68 (508)
T ss_pred hHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccH-------------------HHHHHHHHHHHHHHHHhcChHhh
Confidence 48999999999999999999999999999999987432 58999999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
..||....
T Consensus 69 ~wyd~hre 76 (508)
T KOG0717|consen 69 AWYDSHRE 76 (508)
T ss_pred hhHHHHHH
Confidence 99998654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-10 Score=142.01 Aligned_cols=283 Identities=10% Similarity=-0.057 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCchhHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS--GSDVCVDQKIAVEAS 686 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel--~P~n~~a~~~l~Ea~ 686 (1166)
..+..+...|.+.|++++|+..|++. .+.+..+|..+...|.+.|++++|+..|++..+. .|+. .....+..++
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~-~t~~~ll~a~ 335 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ-FTFSIMIRIF 335 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Confidence 34566788999999999999999865 4567789999999999999999999999998764 4542 2333333444
Q ss_pred HHhhhHHhHHHHHHHHHH-------------HHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHH
Q 039706 687 DGLQKAQKVSECMQRSAQ-------------LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQ 753 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~-------------~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~ 753 (1166)
..+.........+..... ...+.+.|++++|+..|++..+ .+...|..+...|.+.|+.++|++
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHH
Confidence 444333333332222111 1113347888888888887643 245677788888888888888888
Q ss_pred HHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhc
Q 039706 754 LCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLA 833 (1166)
Q Consensus 754 ~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~ 833 (1166)
+|++.++..-. |.. ..+..+..++...|.+++|+.+|+......+
T Consensus 413 lf~~M~~~g~~---------------Pd~---------~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g----------- 457 (697)
T PLN03081 413 MFERMIAEGVA---------------PNH---------VTFLAVLSACRYSGLSEQGWEIFQSMSENHR----------- 457 (697)
T ss_pred HHHHHHHhCCC---------------CCH---------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC-----------
Confidence 88887654211 111 1134456677788888888888887532111
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKA 913 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A 913 (1166)
.......|..+...|.+.|++++|.+.++++- . ..+..+|..+..++...|+++.|...+++.+++.|++...
T Consensus 458 -~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~-----~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~ 530 (697)
T PLN03081 458 -IKPRAMHYACMIELLGREGLLDEAYAMIRRAP-F-----KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN 530 (697)
T ss_pred -CCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-C-----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcc
Confidence 11123345556788889999999998887652 1 2245578888888889999999999999999999988888
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
|..++.+|...|++++|.+.++...+.
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999988877643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-09 Score=135.43 Aligned_cols=290 Identities=9% Similarity=0.009 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-chhHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDP-DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD-VCVDQKIAVEAS 686 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP-~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~-n~~a~~~l~Ea~ 686 (1166)
..|..+-.+|...|++++|+..|.++.+... -+...|..+..+|.+.|++++|.+.|+.+.+.... +...+..+...+
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy 517 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3355566778899999999999999988653 35678889999999999999999999998875422 344455555555
Q ss_pred HHhhhHHhHHHHHHHHH-------------HHHHhhcCCCHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHHccCHH
Q 039706 687 DGLQKAQKVSECMQRSA-------------QLLQNKTSNDAEIALGVIDEALFI----SSYSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~-------------~~l~~~~~gd~eeALe~lekALel----~P~~~~al~~lA~~y~~lGdye 749 (1166)
....+...+...+.... .+..+...|++++|++.+++.... .|+ ...|..+..+|.+.|+++
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVD 596 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHH
Confidence 54444444433332221 011133578999999999988753 344 467777888899999999
Q ss_pred HHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 750 EVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
+|+++|+.+.+...... ...|..+...|...|++++|+.+|.+.....-.
T Consensus 597 eA~elf~~M~e~gi~p~------------------------~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~------ 646 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGT------------------------PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK------ 646 (1060)
T ss_pred HHHHHHHHHHHcCCCCC------------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------
Confidence 99999998876532110 012455778899999999999999986432111
Q ss_pred hhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--C
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--D 907 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--d 907 (1166)
.+...+..+...|.+.|++++|++.|.++++.. ...+..+|..+..+|.+.|++++|+..|++.... .
T Consensus 647 -------PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G---~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 647 -------PDEVFFSALVDVAGHAGDLDKAFEILQDARKQG---IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred -------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 123456667788999999999999999998753 2446678999999999999999999999998764 4
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
| +...|..+...|.+.|++++|+..|+++...
T Consensus 717 P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 717 P-TVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 5 4678999999999999999999999988653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-10 Score=129.36 Aligned_cols=216 Identities=16% Similarity=0.081 Sum_probs=159.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHH
Q 039706 637 IDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEI 716 (1166)
Q Consensus 637 ldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~ee 716 (1166)
.||+++.+|..+|.++...|+.+.|...+.++.+..|.+...... .. ...+.....|++++
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----------------~~---~~a~~~~~~g~~~~ 61 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERER----------------AH---VEALSAWIAGDLPK 61 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH----------------HH---HHHHHHHHcCCHHH
Confidence 389999999999999999999999999999999887764321111 01 11222334799999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cCCCCCccccCcccccCccchhhhhhhhhHHHH
Q 039706 717 ALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA-EKNSPPLDANGQSMELDSSESTKHVSFRLWRCC 795 (1166)
Q Consensus 717 ALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~-p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~ 795 (1166)
|+..++++++..|.+..++.. +..+..++++..+...+.+++... +..+. ..+.+.
T Consensus 62 A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~~~~ 118 (355)
T cd05804 62 ALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPD----------------------YWYLLG 118 (355)
T ss_pred HHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCC----------------------cHHHHH
Confidence 999999999999999877776 667777776666665555555431 11111 112245
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCch
Q 039706 796 LIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF 875 (1166)
Q Consensus 796 lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~ 875 (1166)
.+|.++...|++++|+..+++++...+. ....+..+|.+++..|++++|+.+|.+++...+.....
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~--------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~ 184 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD--------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML 184 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC--------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch
Confidence 6788999999999999999997554443 24556677999999999999999999999876432223
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC
Q 039706 876 AAICFCNRAAAYKALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 876 ~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP 908 (1166)
....|..+|.++..+|++++|+..|++++...|
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 345677899999999999999999999987666
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-12 Score=141.56 Aligned_cols=70 Identities=40% Similarity=0.638 Sum_probs=64.6
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+||+...++..+|+++||+.|++|||||++.+ +.|.++|..|++||+||+|+.+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~d--------------------P~A~ekFq~L~eAy~VL~D~~~ 63 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGD--------------------PQAAEKFQELSEAYEVLSDEES 63 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC--------------------hHHHHHHHHHHHHHHHhcCHHH
Confidence 35999999999999999999999999999999999843 4699999999999999999999
Q ss_pred hcccchhhhh
Q 039706 1063 RSRYDLEEET 1072 (1166)
Q Consensus 1063 R~~YD~~~~~ 1072 (1166)
|..||+.+..
T Consensus 64 R~~YDk~~k~ 73 (296)
T KOG0691|consen 64 RAAYDKLRKS 73 (296)
T ss_pred HHHHHHHhhh
Confidence 9999997763
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-09 Score=121.71 Aligned_cols=294 Identities=15% Similarity=0.048 Sum_probs=192.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~ 694 (1166)
-..+...++|++|+..+.++|...|+...+....-.++.++++|++|+...++-..+.-.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~------------------- 79 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN------------------- 79 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-------------------
Confidence 3456778999999999999999999999999999999999999999996554422211110
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcccc--
Q 039706 695 VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDAN-- 772 (1166)
Q Consensus 695 ~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~-- 772 (1166)
.+ .+..++-.++.+..++|+..++ ..++.+..++..+|.+++++++|++|+..|+.+++...+..+.....
T Consensus 80 ---~~-~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl 152 (652)
T KOG2376|consen 80 ---SF-FFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANL 152 (652)
T ss_pred ---hh-hHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 00 0222333445899999999998 45666778999999999999999999999999987655443221000
Q ss_pred ---C-----cccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhh-hccchHHHHHHh
Q 039706 773 ---G-----QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIP-LAGTVRELLCRK 843 (1166)
Q Consensus 773 ---g-----~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~-L~~~~~~a~~l~ 843 (1166)
+ +.++..+.... . .+..+++.+.++...|+|.+|++.+++++............. -...........
T Consensus 153 ~a~~a~l~~~~~q~v~~v~e-~---syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 153 LAVAAALQVQLLQSVPEVPE-D---SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHHhhhHHHHHhccCCCc-c---hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 0 01111111111 1 123367889999999999999999999844221111000000 011112233456
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHH--------------------------------------------
Q 039706 844 SAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAIC-------------------------------------------- 879 (1166)
Q Consensus 844 ~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a-------------------------------------------- 879 (1166)
.++.++..+|+.++|...|...|..++...|..+.+
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 678999999999999999999888763222221111
Q ss_pred -HHHHHHHHHHhh----------------------------------chhHHHHHHHHHHHhCCCh-HHHHHHHHHHHHH
Q 039706 880 -FCNRAAAYKALR----------------------------------HITDAIADCNLAIALDGNY-LKAISRRATLYEM 923 (1166)
Q Consensus 880 -~~nlA~ay~~lG----------------------------------q~eeAi~~lekALeldP~~-~~A~~~LA~ay~~ 923 (1166)
+.|++...+..+ .+..|+..+...-+-+|.. ....+.++.+...
T Consensus 309 i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 309 IYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 122222222111 2334444555555556666 5678888999999
Q ss_pred hhCHHHHHHHHHHHH
Q 039706 924 IRDYDHAASDFHRLI 938 (1166)
Q Consensus 924 lGdyeeAi~~yekAL 938 (1166)
+|+++.|+..+...+
T Consensus 389 ~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 389 QGNPEVALEILSLFL 403 (652)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999999554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=117.55 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=98.3
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
+..+|.++...|++++|+.+|++++.++ |.+..+|+++|.++..+|++++|+..|++++.++|.++.+++++|.++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ----PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4456999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 922 EMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 922 ~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
..+|++++|+..|++++++.|++.+.+
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999999999987755
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-10 Score=129.07 Aligned_cols=288 Identities=15% Similarity=0.077 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAID------PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeld------P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
.|..+|.+|+.+++|.+|+++-..-|.+. -..+++--+||+++--+|.|++|+.+..+-|.+...
T Consensus 57 IYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~are--------- 127 (639)
T KOG1130|consen 57 IYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARE--------- 127 (639)
T ss_pred HHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHH---------
Confidence 37889999999999999998765444332 234567788999999999999999999887754221
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHh-----------------hcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQN-----------------KTSNDAEIALGVIDEALFISSYS------EKLLEMKAE 740 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~-----------------~~~gd~eeALe~lekALel~P~~------~~al~~lA~ 740 (1166)
+-. ++.+...++.....+... .....++.|+++|..-|++.... ..++-++|.
T Consensus 128 -LgD---rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGN 203 (639)
T KOG1130|consen 128 -LGD---RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGN 203 (639)
T ss_pred -HhH---HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCc
Confidence 111 111111112211111110 00123556677777766654322 246678899
Q ss_pred HHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 039706 741 ALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESG 820 (1166)
Q Consensus 741 ~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~ 820 (1166)
.|+.+|+|++||..-+.-|.+....... + ..-..+.++|.+|..+|+++.|+++|+.+
T Consensus 204 TyYlLGdf~~ai~~H~~RL~ia~efGDr---------------A----aeRRA~sNlgN~hiflg~fe~A~ehYK~t--- 261 (639)
T KOG1130|consen 204 TYYLLGDFDQAIHFHKLRLEIAQEFGDR---------------A----AERRAHSNLGNCHIFLGNFELAIEHYKLT--- 261 (639)
T ss_pred eeeeeccHHHHHHHHHHHHHHHHHhhhH---------------H----HHHHhhcccchhhhhhcccHhHHHHHHHH---
Confidence 9999999999999999888886654321 0 00112457999999999999999999986
Q ss_pred CCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhHHHH
Q 039706 821 NGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITDAIA 898 (1166)
Q Consensus 821 ~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~eeAi~ 898 (1166)
+..++++......+...+.+|+.|.-..+|++||.++.+-|.+.. +.......+++.+|.+|..+|..++|+.
T Consensus 262 -----l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 262 -----LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred -----HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 445667777778888999999999999999999999999888763 2233456677889999999999999999
Q ss_pred HHHHHHHhC-----CC-hHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 899 DCNLAIALD-----GN-YLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 899 ~lekALeld-----P~-~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
+.++.+++. +. ...+..++....+.+|.-+--....+..
T Consensus 337 fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~te~~ 381 (639)
T KOG1130|consen 337 FAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVDDTELI 381 (639)
T ss_pred HHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCCcHHHH
Confidence 999988763 32 4567777888888887655444444333
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-09 Score=136.92 Aligned_cols=282 Identities=12% Similarity=0.008 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCchhHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS-GSDVCVDQKIAVEASD 687 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel-~P~n~~a~~~l~Ea~~ 687 (1166)
..+..+...|.+.|++++|+..|++..+ .+...|..+...|.+.|++++|+..|++.+.. .|+ ......+..+..
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd-~~t~~~lL~a~~ 500 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN-SVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC-HhHHHHHHHHHh
Confidence 3456678899999999999999987643 45568889999999999999999999998763 343 333333333433
Q ss_pred HhhhHHhHHHHHHHHHH-------------HHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQ-------------LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~-------------~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
.+.......+....... ...+.+.|++++|+..|+.. +.+...|..+...|...|+.++|+.+
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 34333333332222111 11234589999999999886 55778899999999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
|++..+..-. |... .+..+-.++...|.+++|+.+|+...... .
T Consensus 577 f~~M~~~g~~---------------Pd~~---------T~~~ll~a~~~~g~v~ea~~~f~~M~~~~------------g 620 (857)
T PLN03077 577 FNRMVESGVN---------------PDEV---------TFISLLCACSRSGMVTQGLEYFHSMEEKY------------S 620 (857)
T ss_pred HHHHHHcCCC---------------CCcc---------cHHHHHHHHhhcChHHHHHHHHHHHHHHh------------C
Confidence 9998764221 1111 02334567889999999999999863211 1
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
.......|..+...+.+.|++++|.+.+++.- +. | +..+|..+-.++...++.+.|....+++++++|++...|
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~----p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-IT----P-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 11234556777899999999999999998862 22 3 356777777777888999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
..++.+|...|+|++|.+..+...+.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999988877643
|
|
| >PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.2e-12 Score=109.33 Aligned_cols=64 Identities=44% Similarity=0.749 Sum_probs=58.9
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhc
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRS 1064 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~ 1064 (1166)
+||++|||++.++.++|+++|+++++++|||+.+.. ...++..|..|++||++|+||.+|+
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~-------------------~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGD-------------------EAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTST-------------------HHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhh-------------------hhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 589999999999999999999999999999997632 0468899999999999999999999
Q ss_pred ccc
Q 039706 1065 RYD 1067 (1166)
Q Consensus 1065 ~YD 1067 (1166)
.||
T Consensus 62 ~YD 64 (64)
T PF00226_consen 62 RYD 64 (64)
T ss_dssp HHH
T ss_pred hcC
Confidence 998
|
Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A .... |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=118.73 Aligned_cols=113 Identities=11% Similarity=-0.032 Sum_probs=102.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
..+|.++...|++++|+..|++++..+ +.....+..+|.++...|++++|+..|++++.++ |
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~--------------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~----p 89 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQ--------------PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD----A 89 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----C
Confidence 347889999999999999999984443 4457778889999999999999999999999998 9
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR 925 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG 925 (1166)
.++.+|+++|.++..+|++++|+..|.+++.+.|+++.++..++.+...++
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998877654
|
|
| >PTZ00341 Ring-infected erythrocyte surface antigen; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-11 Score=151.81 Aligned_cols=68 Identities=31% Similarity=0.369 Sum_probs=62.3
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||+++|+..+||+|||++|++|||||++. ..|..+|+.|++||+|||||.+
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~---------------------~~A~ekFq~I~EAYeVLSDp~k 630 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG---------------------NEGFHKFKKINEAYQILGDIDK 630 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------------------chHHHHHHHHHHHHHHhCCHHH
Confidence 4699999999999999999999999999999999862 2477899999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||.++.
T Consensus 631 Rk~YD~~G~ 639 (1136)
T PTZ00341 631 KKMYNKFGY 639 (1136)
T ss_pred HHHHhhccc
Confidence 999999765
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=119.11 Aligned_cols=112 Identities=35% Similarity=0.500 Sum_probs=101.2
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc-CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE-SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e-~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
...+..++..|+.+|..|+|++|...|..||.+.|. .......+|.|+|.|+++++.++.||..|.+||+++|.+.+|+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 344666778899999999999999999999998752 2245678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
.+||.+|.++..|++|+.+|+++++++|...+.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 999999999999999999999999999988654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-09 Score=131.87 Aligned_cols=275 Identities=14% Similarity=0.025 Sum_probs=204.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh----hHHhHHH
Q 039706 622 GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ----KAQKVSE 697 (1166)
Q Consensus 622 G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~----k~~~~~e 697 (1166)
+....|..+|..++..||.+ ...+|.+......|.+|...+.....+.-+.. .+.++.-.+. +.-.+..
T Consensus 382 ~~l~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~----slselswc~~~~~ek~mdva~ 454 (1238)
T KOG1127|consen 382 SILSWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLSFNDD----SLSELSWCLPRALEKMMDVAL 454 (1238)
T ss_pred HHHHHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhhcCch----hhhHhhHHHHHhHHhhhhHHH
Confidence 34455666777777777766 55566677777778888777776665541111 0111111111 1111111
Q ss_pred HHHHH---HHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCc
Q 039706 698 CMQRS---AQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQ 774 (1166)
Q Consensus 698 ~~~~a---~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~ 774 (1166)
+.... .....-...++...|+.+|-+++++++....++..+|.+|..--+...|..+|++|.++++.+..+
T Consensus 455 ~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea------ 528 (1238)
T KOG1127|consen 455 LLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA------ 528 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh------
Confidence 11110 000111235678999999999999999999999999999999999999999999999998876544
Q ss_pred ccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCC
Q 039706 775 SMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGR 854 (1166)
Q Consensus 775 ~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~ 854 (1166)
+..++..|....+++.|....-.+-+. .+.....+.|..+|-.|...++
T Consensus 529 -------------------aaa~adtyae~~~we~a~~I~l~~~qk------------a~a~~~k~nW~~rG~yyLea~n 577 (1238)
T KOG1127|consen 529 -------------------AAASADTYAEESTWEEAFEICLRAAQK------------APAFACKENWVQRGPYYLEAHN 577 (1238)
T ss_pred -------------------HHHHHHHhhccccHHHHHHHHHHHhhh------------chHHHHHhhhhhccccccCccc
Confidence 234788899999999998885543111 1112223445557999999999
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHH
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDF 934 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~y 934 (1166)
+..|+..|+.|+..+ |.+..+|..+|.+|...|+|..|++.|.+|..++|.+.-+.+..|.+...+|+|.+|+..+
T Consensus 578 ~h~aV~~fQsALR~d----PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTD----PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred hhhHHHHHHHHhcCC----chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 039706 935 HRLIALLTKQ 944 (1166)
Q Consensus 935 ekALeL~P~~ 944 (1166)
...+......
T Consensus 654 ~~ii~~~s~e 663 (1238)
T KOG1127|consen 654 GLIIYAFSLE 663 (1238)
T ss_pred HHHHHHHHHH
Confidence 9998765444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5e-09 Score=133.22 Aligned_cols=280 Identities=15% Similarity=0.045 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-hhHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV-CVDQKIAVEASD 687 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n-~~a~~~l~Ea~~ 687 (1166)
..|..+..+|.+.|++++|+..|++..+ | +...|..+...|.+.|++++|+..|++.++....- ......+..+..
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 3455677899999999999999988753 3 45678899999999999999999999988754321 112222222222
Q ss_pred HhhhHHhHHHHHHHH-------------HHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 688 GLQKAQKVSECMQRS-------------AQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a-------------~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
.+............. ...-.+.+.|++++|+..|++. .+.+...|..+...|.+.|++++|+.+
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 222222111111110 0111134578999999988875 345677888899999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
|++.....-. +.. ..+..+..+|...|++++|...+.........
T Consensus 313 f~~M~~~g~~---------------pd~---------~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~----------- 357 (697)
T PLN03081 313 YYEMRDSGVS---------------IDQ---------FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP----------- 357 (697)
T ss_pred HHHHHHcCCC---------------CCH---------HHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-----------
Confidence 9887653211 000 11344556677777777777777665332111
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--CCChHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--DGNYLK 912 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--dP~~~~ 912 (1166)
.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|++.|++.++. .|+ ..
T Consensus 358 --~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~ 427 (697)
T PLN03081 358 --LDIVANTALVDLYSKWGRMEDARNVFDRMPR-------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HV 427 (697)
T ss_pred --CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HH
Confidence 1122333445566666666666666665542 13445666666666666666666666665553 233 34
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIA 939 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALe 939 (1166)
.+..+..++...|+.++|...|+.+.+
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 455555666666666666666666554
|
|
| >KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-11 Score=128.91 Aligned_cols=70 Identities=40% Similarity=0.650 Sum_probs=64.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+.|.+|||.+.++..+|++||+++||+||||+.. ++...+|...|+.|+.||.||+|.++|
T Consensus 14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~------------------eed~~ea~~kFq~l~k~y~iLsDeekR 75 (264)
T KOG0719|consen 14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH------------------EEDKVEATEKFQQLQKAYQILSDEEKR 75 (264)
T ss_pred cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch------------------hhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 48999999999999999999999999999999963 455678999999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||..+.
T Consensus 76 ~~YDetG~ 83 (264)
T KOG0719|consen 76 AVYDETGS 83 (264)
T ss_pred HHHhccCC
Confidence 99998554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-08 Score=113.49 Aligned_cols=286 Identities=13% Similarity=0.078 Sum_probs=207.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
.+-|..-+..|+|.+|.....++-+-.+.-.-+|+.-|.+.-++|+++.|-.++.++-++.++...
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l-------------- 153 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL-------------- 153 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH--------------
Confidence 445667777899999999999988888888889999999999999999999999999998555221
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
...+..+...+ ..++++.|...++++++..|.++.++....++|+..|+|.+...++.+.-+..--..+-...
T Consensus 154 ----~v~ltrarlll---~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~ 226 (400)
T COG3071 154 ----AVELTRARLLL---NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR 226 (400)
T ss_pred ----HHHHHHHHHHH---hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH
Confidence 11122222233 48999999999999999999999999999999999999999988887765442211110000
Q ss_pred c------Cccccc-Cccchhh----------hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 772 N------GQSMEL-DSSESTK----------HVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 772 ~------g~~l~l-d~~~~~~----------~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
+ +.+-+. +...... ..-........++.-+..+|++++|.+.++.+++...+..+
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L-------- 298 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL-------- 298 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH--------
Confidence 0 000000 0000000 00000111123556678889999999999887654444211
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
..+. -...-+++..=++..++.+... |.++.+++.+|..|++.+.|.+|-.+++.|+...|. ...+
T Consensus 299 -----~~~~----~~l~~~d~~~l~k~~e~~l~~h----~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~ 364 (400)
T COG3071 299 -----CRLI----PRLRPGDPEPLIKAAEKWLKQH----PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDY 364 (400)
T ss_pred -----HHHH----hhcCCCCchHHHHHHHHHHHhC----CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhH
Confidence 1111 2245677888888888888877 778899999999999999999999999999998875 6678
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
..+|.++..+|+..+|.+.+++++.+
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88999999999999999999999854
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=136.20 Aligned_cols=161 Identities=14% Similarity=0.040 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHH
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWR 793 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr 793 (1166)
..+++..+.....-.|..++++.++|.+...+|++++|...++.++++.|++..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a------------------------- 122 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA------------------------- 122 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH-------------------------
Confidence 3445555555566788999999999999999999999999999999999987543
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
...++.++.+++++++|+..+++++... +..+..+..+|.++.+.|+|++|+++|++++..+
T Consensus 123 ~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~---- 184 (694)
T PRK15179 123 FILMLRGVKRQQGIEAGRAEIELYFSGG--------------SSSAREILLEAKSWDEIGQSEQADACFERLSRQH---- 184 (694)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcC--------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC----
Confidence 3457888888888888888888874433 3446677778888888888888888888888755
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
|..+.+|.++|.++..+|+.++|...|++|++....-.+.|.++
T Consensus 185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 77788888888888888888888888888888876655555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-09 Score=115.49 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=120.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHH
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQ 693 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~ 693 (1166)
+|-|++.+|+|++|+..|.-+...+.-..+.+++||.|++.+|.|.+|.....+| |+++....++..+...+..-.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHH
Confidence 7999999999999999999998877778899999999999999999999877664 666666666666655555544
Q ss_pred hHHHHHHHHHHHHH--------hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 694 KVSECMQRSAQLLQ--------NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 694 ~~~e~~~~a~~~l~--------~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
+.......+...+. .+..-.|++||+.|.++|.-+|....+-..+|.||+++.-|+-+.+.+.-.|...|+.
T Consensus 139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 44433333222211 2335679999999999999999999999999999999999999999999999888876
Q ss_pred CC
Q 039706 766 SP 767 (1166)
Q Consensus 766 ~~ 767 (1166)
.-
T Consensus 219 ti 220 (557)
T KOG3785|consen 219 TI 220 (557)
T ss_pred HH
Confidence 43
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.5e-10 Score=118.58 Aligned_cols=147 Identities=17% Similarity=0.115 Sum_probs=118.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCC----CCchhhh-----hhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHH
Q 039706 796 LIFKSYFTLGRLEEAIAALERHESGN----GGKMLES-----LIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAAL 866 (1166)
Q Consensus 796 lLA~ay~~lGd~eeAl~~lekAl~~~----~~k~le~-----a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kAL 866 (1166)
..+-.|+..|++.......++..... .....+. ...+...+.....|..+|.+|...|++++|+.+|++|+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al 100 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQAL 100 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456888888887766554432211 0111111 12244556678889999999999999999999999999
Q ss_pred hccccCCchhHHHHHHHHHHH-HHhhc--hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 867 SCTVESHPFAAICFCNRAAAY-KALRH--ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 867 el~~e~~p~~a~a~~nlA~ay-~~lGq--~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.++ |.++.++.++|.++ ...|+ +++|+..++++++++|+++.+++.+|.++..+|+|++|+..|++++++.|.
T Consensus 101 ~l~----P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 101 QLR----GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HhC----CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 998 89999999999975 67787 599999999999999999999999999999999999999999999999877
Q ss_pred hHH
Q 039706 944 QIE 946 (1166)
Q Consensus 944 ~~e 946 (1166)
+.+
T Consensus 177 ~~~ 179 (198)
T PRK10370 177 RVN 179 (198)
T ss_pred Ccc
Confidence 543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-10 Score=128.19 Aligned_cols=110 Identities=29% Similarity=0.427 Sum_probs=96.5
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-----------CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES-----------HPFAAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~-----------~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
+...+..|+.|++.|+|..|+..|++|+..-... ......++.|+|.||.++++|.+|+..|+++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4456677999999999999999999998754210 11235689999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|++.+|++++|.+|+.+++|+.|+.+|++|+++.|.+..+.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAAR 328 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999996543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=117.24 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=108.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHH
Q 039706 621 LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQ 700 (1166)
Q Consensus 621 lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~ 700 (1166)
.++.++++..++++++.+|++..+|+.+|.+|..+|++++|+..|++++++.|++...+..+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA----------------- 114 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALA----------------- 114 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-----------------
Confidence 567799999999999999999999999999999999999999999999999999654322221
Q ss_pred HHHHHHHhhcCCC--HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 701 RSAQLLQNKTSND--AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 701 ~a~~~l~~~~~gd--~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
..++ ...|+ +++|+..++++++.+|.+..++.++|.+++.+|+|++|+.++++++++.|...
T Consensus 115 --~aL~--~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 115 --TVLY--YQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred --HHHH--HhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 1111 12455 69999999999999999999999999999999999999999999999988654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-10 Score=127.12 Aligned_cols=95 Identities=27% Similarity=0.336 Sum_probs=78.8
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
.|..|+..|.++|+++|+++ .+|.|||.+|.++|.|+.|+++|+.||.+||.+.++|.+||.+|+.+
T Consensus 96 ~Y~eAv~kY~~AI~l~P~nA-------------VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTNA-------------VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred hHHHHHHHHHHHHhcCCCcc-------------hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34555555555555555544 44667999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
|++++|++.|+++|+++|++...+..|.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 9999999999999999999865444443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-08 Score=129.24 Aligned_cols=290 Identities=16% Similarity=0.042 Sum_probs=200.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDF-----LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~-----~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
...+|.++...|++++|+..+++++...|.. ..++..+|.++...|++++|..++++++.......
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g--------- 525 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD--------- 525 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc---------
Confidence 4557889999999999999999999865543 24567889999999999999999999987533210
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC--------hHHHHHHHHHHHHHccCHHHHHHHHHH
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY--------SEKLLEMKAEALFMLRKYEEVIQLCEQ 757 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~--------~~~al~~lA~~y~~lGdyeeAi~~lek 757 (1166)
............ .......|+++.|...+++++.+... ...++..+|.+++..|++++|...+.+
T Consensus 526 -----~~~~~~~~~~~l--a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 526 -----VYHYALWSLLQQ--SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred -----chHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 000000011111 11123589999999999999876321 233466789999999999999999999
Q ss_pred HHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchH
Q 039706 758 TFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVR 837 (1166)
Q Consensus 758 ALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~ 837 (1166)
++.+....... .....+..++.++...|++++|...+.++........ .. ...
T Consensus 599 al~~~~~~~~~--------------------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~------~~-~~~ 651 (903)
T PRK04841 599 GLEVLSNYQPQ--------------------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR------YH-SDW 651 (903)
T ss_pred hHHhhhccCch--------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc------cc-HhH
Confidence 98875432110 0112235688899999999999999988643111100 00 000
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC------CChH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD------GNYL 911 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld------P~~~ 911 (1166)
...........+...|+.+.|..++.................+..+|.++..+|++++|+..+++++... ...+
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 0001111123445678999999888776643211111122345689999999999999999999999863 2345
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.++..+|.+|...|++++|...+++|+++...
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 68889999999999999999999999998654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=109.52 Aligned_cols=103 Identities=11% Similarity=0.037 Sum_probs=97.8
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
......++.+|..++..|++++|...|+-+..++ |.+...|+++|.|+..+|+|.+|+..|.+|+.++|+++.+++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 3456677888999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
++|.||+.+|+.+.|+..|+.++.+..
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-08 Score=117.76 Aligned_cols=253 Identities=13% Similarity=0.071 Sum_probs=154.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 039706 641 FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGV 720 (1166)
Q Consensus 641 ~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~ 720 (1166)
+.++++..+.++...|++++|+++++.....-.+.. .++..-+.++ ...|++++|...
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~--------------------~~~E~rA~ll--~kLg~~~eA~~~ 60 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKL--------------------AVLEKRAELL--LKLGRKEEAEKI 60 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH--------------------HHHHHHHHHH--HHcCCHHHHHHH
Confidence 456788889999999999999999987665444311 1111112222 247999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHH
Q 039706 721 IDEALFISSYSEKLLEMKAEALFMLR-----KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCC 795 (1166)
Q Consensus 721 lekALel~P~~~~al~~lA~~y~~lG-----dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~ 795 (1166)
|..+|..+|++...+..+..++.... ..+....+|++.....|....+ .
T Consensus 61 y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~--------------------------~ 114 (517)
T PF12569_consen 61 YRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP--------------------------R 114 (517)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch--------------------------h
Confidence 99999999999999999888884443 4667788888887777754322 0
Q ss_pred HHHHHHHHcCCHHHHHHHH-HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 796 LIFKSYFTLGRLEEAIAAL-ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 796 lLA~ay~~lGd~eeAl~~l-ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
.+...+..-..|...+..| ...+...-.........++..+........+...+...-.......... ....+...
T Consensus 115 rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~---~~~~~~p~ 191 (517)
T PF12569_consen 115 RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD---DEEKEPPS 191 (517)
T ss_pred HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc---ccccCCch
Confidence 1111111112333333332 2332222111122222233333222222222222221111000000000 00001111
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
...++++.+|..|..+|++++|+.++++||+..|+.++.|+..|.+|...|++.+|...++.|..+++.+
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 2245678889999999999999999999999999999999999999999999999999999999887665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.8e-08 Score=126.43 Aligned_cols=277 Identities=10% Similarity=-0.030 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCchhHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS--GSDVCVDQKIAVEAS 686 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel--~P~n~~a~~~l~Ea~ 686 (1166)
..|..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..|++..+. .|+... ...+..+.
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t-~~~ll~a~ 399 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT-IASVLSAC 399 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-HHHHHHHH
Confidence 446667788888888888888888753 234567888888888889999998888877653 355321 11111122
Q ss_pred HHhhhHHhHHHHHHHHHH-------------HHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHH
Q 039706 687 DGLQKAQKVSECMQRSAQ-------------LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQ 753 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~-------------~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~ 753 (1166)
............+..+.. ...+.+.|++++|+..|++..+ .+...|..+...|...|++++|+.
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHH
Confidence 222222221111111100 0012235566666666655322 233445555555666666666666
Q ss_pred HHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhc
Q 039706 754 LCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLA 833 (1166)
Q Consensus 754 ~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~ 833 (1166)
.|++.+...+.+... +..+-.++...|.++.+...+..++...-.
T Consensus 477 lf~~m~~~~~pd~~t-------------------------~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~---------- 521 (857)
T PLN03077 477 FFRQMLLTLKPNSVT-------------------------LIAALSACARIGALMCGKEIHAHVLRTGIG---------- 521 (857)
T ss_pred HHHHHHhCCCCCHhH-------------------------HHHHHHHHhhhchHHHhHHHHHHHHHhCCC----------
Confidence 666554321100000 111112222233333333332222110000
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--CCChH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--DGNYL 911 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--dP~~~ 911 (1166)
.+...+..+-..|.+.|++++|...|+.. ..+..+|..+...|.+.|+.++|+..|++.++. .|+ .
T Consensus 522 ---~~~~~~naLi~~y~k~G~~~~A~~~f~~~--------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~ 589 (857)
T PLN03077 522 ---FDGFLPNALLDLYVRCGRMNYAWNQFNSH--------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-E 589 (857)
T ss_pred ---ccceechHHHHHHHHcCCHHHHHHHHHhc--------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-c
Confidence 00111122334555566666666655553 123445555556666666666666666655543 233 2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIA 939 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALe 939 (1166)
..+..+-.++.+.|++++|...|+.+.+
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 2344444455556666666666665553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=107.43 Aligned_cols=107 Identities=20% Similarity=0.223 Sum_probs=99.7
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
+........+|..++..|++++|+..|++++.++ |.+..+|+++|.++..+|++++|+..|++++.++|.++..++
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD----PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 3345667778999999999999999999999988 888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.+|.+|..+|++++|+..|++++++.|++..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999887754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=125.73 Aligned_cols=103 Identities=29% Similarity=0.358 Sum_probs=97.4
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
+...|..++..|+|++|+.+|++||.++ |.++.+|+++|.+|..+|++++|+.++++||.++|.++.+|+++|.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 4556899999999999999999999998 888999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 922 EMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 922 ~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
..+|+|++|+..|++++++.|.+....
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999986643
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.1e-07 Score=106.04 Aligned_cols=331 Identities=12% Similarity=0.045 Sum_probs=197.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH--HHHHHHHHHh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ--KIAVEASDGL 689 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~--~~l~Ea~~~L 689 (1166)
+.+|.|++++++.++|+.+++ .+++....++...|.+++++++|++|+..|+..++.+.++.... ..+..+...+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 689999999999999999998 55777778899999999999999999999999988665532221 1121211111
Q ss_pred hh-----HHhH-----HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC--------C-------hHHHHHHHHHHHHH
Q 039706 690 QK-----AQKV-----SECMQRSAQLLQNKTSNDAEIALGVIDEALFISS--------Y-------SEKLLEMKAEALFM 744 (1166)
Q Consensus 690 ~k-----~~~~-----~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P--------~-------~~~al~~lA~~y~~ 744 (1166)
.- ...+ ..+++.+-. ....|+|.+|++.+++|+.+.- . -..+...+|.+|..
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~---~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACI---LIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11 1111 112222222 3358999999999999965531 1 12567889999999
Q ss_pred ccCHHHHHHHHHHHHHhccCCCCCccccCc---ccccCccchh------------h-------hhhhhh--HHHHHHHHH
Q 039706 745 LRKYEEVIQLCEQTFHFAEKNSPPLDANGQ---SMELDSSEST------------K-------HVSFRL--WRCCLIFKS 800 (1166)
Q Consensus 745 lGdyeeAi~~lekALel~p~n~~a~~~~g~---~l~ld~~~~~------------~-------~~~~~~--wr~~lLA~a 800 (1166)
+|+.++|...|...+..+|.+.+....... ++..|..... . -+...- ..+.+.+..
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877653211110 1111111111 0 000000 112333444
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCchhhhh----hh---------------h--ccchHHHHHHhhhhHHHHHcCChHHHH
Q 039706 801 YFTLGRLEEAIAALERHESGNGGKMLESL----IP---------------L--AGTVRELLCRKSAGNEAFQAGRHSEAV 859 (1166)
Q Consensus 801 y~~lGd~eeAl~~lekAl~~~~~k~le~a----~~---------------L--~~~~~~a~~l~~lG~~~~~~G~yeEAi 859 (1166)
.+..+.-+.+.+.....-...+...+... .. . ..........+.++...+.+|+++.|+
T Consensus 317 ~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred HHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 44555555555444332111211111000 00 0 001112345556788889999999999
Q ss_pred HHHHHHHhccc---cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-------CCChHHHHHHHHHHHHHhhCHHH
Q 039706 860 EHYTAALSCTV---ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL-------DGNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 860 e~y~kALel~~---e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel-------dP~~~~A~~~LA~ay~~lGdyee 929 (1166)
+.+...+.... ..-...+.+-..+-..|+..+..+-|.+.+..|+.. .+..-..+...+..-++-|+-++
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 99983331110 000123334444555677777766677777766653 22222344455666677799999
Q ss_pred HHHHHHHHHHHhhhhHHhh
Q 039706 930 AASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 930 Ai~~yekALeL~P~~~e~~ 948 (1166)
|...|++.++..|.+.+..
T Consensus 477 a~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred HHHHHHHHHHhCCchHHHH
Confidence 9999999999988887643
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-10 Score=127.14 Aligned_cols=237 Identities=14% Similarity=0.078 Sum_probs=176.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
+-.+|..|+.+|+|++||.||.+++.++|.++-.+.++|.+|+++..+..|......|+.++..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---------------- 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---------------- 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH----------------
Confidence 3458999999999999999999999999999999999999999999999998888877765421
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
...+|..++.+-..+|...+|...|+.+|.+.|++.+
T Consensus 164 ----------------------------------------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E--- 200 (536)
T KOG4648|consen 164 ----------------------------------------YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE--- 200 (536)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH---
Confidence 2234556677777778888888888888888776422
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
|-..|..+..+.++.-. .+ ..+. .+........+...+..|+.++
T Consensus 201 --------------------------LkK~~a~i~Sl~E~~I~-~K---sT~G-----~~~A~Q~~~Q~l~~K~~G~~Fs 245 (536)
T KOG4648|consen 201 --------------------------LKKSLARINSLRERKIA-TK---STPG-----FTPARQGMIQILPIKKPGYKFS 245 (536)
T ss_pred --------------------------HHHHHHHhcchHhhhHH-hh---cCCC-----CCccccchhhhccccCcchhhh
Confidence 11222222222222111 11 1111 1111122223333456689999
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
..+.|+.|+.+|..-+..+ ..+..+-.+ +..|.+.-+++.|+..|.+++.++|.+..+..+++.+---+|...+|
T Consensus 246 k~~~~~~~i~~~~~~~A~~----~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~ 320 (536)
T KOG4648|consen 246 KKAMRSVPVVDVVSPRATI----DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEV 320 (536)
T ss_pred hhhccccceeEeecccccc----CccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhc
Confidence 9999999999999887765 334444444 78899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHH
Q 039706 931 ASDFHRLIALLTKQIE 946 (1166)
Q Consensus 931 i~~yekALeL~P~~~e 946 (1166)
..+++.++.+.|.+..
T Consensus 321 K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 321 KPTKQTAVKVAPAVET 336 (536)
T ss_pred Ccchhheeeecccccc
Confidence 9999999998887644
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.9e-09 Score=130.57 Aligned_cols=135 Identities=11% Similarity=-0.070 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+++++|.+...+|++++|+..++.+++++|++..++..+|.++.+++++++|+..+++++..+|++......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~--- 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK--- 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH---
Confidence 57899999999999999999999999999999999999999999999999999999999999999997554333222
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
++ ...|++++|+++|++++...|+.+.++..+|.++..+|+.++|...|++++.....
T Consensus 163 -----------------~l--~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 163 -----------------SW--DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred -----------------HH--HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 12 23799999999999999999999999999999999999999999999999988553
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-09 Score=122.25 Aligned_cols=255 Identities=16% Similarity=0.139 Sum_probs=172.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPD-FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~-~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~ 694 (1166)
..++-.|+|..+|..++ ....+|. ..+..+.+.++|+.+|+++..+..+...- .|. ..
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~-l~----------------- 67 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPE-LQ----------------- 67 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCC-CH-----------------
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--Chh-HH-----------------
Confidence 45677899999998887 3334442 35677899999999999987766543311 222 11
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcccc
Q 039706 695 VSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS--SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDAN 772 (1166)
Q Consensus 695 ~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~--P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~ 772 (1166)
.+..+..++. ...+-+.++..++..+... +.++.+....|.++...|++++|++.+.+.- +
T Consensus 68 ---av~~la~y~~--~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~-----~------- 130 (290)
T PF04733_consen 68 ---AVRLLAEYLS--SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG-----S------- 130 (290)
T ss_dssp ---HHHHHHHHHC--TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT-----C-------
T ss_pred ---HHHHHHHHHh--CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC-----c-------
Confidence 1111112221 1235566676666655333 2456677788889999999999988875430 0
Q ss_pred CcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc
Q 039706 773 GQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA 852 (1166)
Q Consensus 773 g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~ 852 (1166)
+....+...+|+.+++++.|.+.++...+.+.+. ....+..+++.+..
T Consensus 131 ------------------lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~--------------~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 131 ------------------LELLALAVQILLKMNRPDLAEKELKNMQQIDEDS--------------ILTQLAEAWVNLAT 178 (290)
T ss_dssp ------------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH--------------HHHHHHHHHHHHHH
T ss_pred ------------------ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH--------------HHHHHHHHHHHHHh
Confidence 0112346788999999999999999875544432 22222234444444
Q ss_pred C--ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH-HH
Q 039706 853 G--RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY-DH 929 (1166)
Q Consensus 853 G--~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy-ee 929 (1166)
| .+.+|.-.|++..+.. +..+.++..+|.|++.+|+|++|...+.+|+..+|.+++++.+++.+...+|+. +.
T Consensus 179 g~e~~~~A~y~f~El~~~~----~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKF----GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred CchhHHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 4 6999999999976654 567788999999999999999999999999999999999999999999999998 56
Q ss_pred HHHHHHHHHHHhhhh
Q 039706 930 AASDFHRLIALLTKQ 944 (1166)
Q Consensus 930 Ai~~yekALeL~P~~ 944 (1166)
+.+++.++....|.+
T Consensus 255 ~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 255 AERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHhCCCC
Confidence 667777777777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >smart00271 DnaJ DnaJ molecular chaperone homology domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.7e-10 Score=95.38 Aligned_cols=59 Identities=54% Similarity=0.821 Sum_probs=53.3
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
+||.+|||++.++.++|+++|+++++++|||+.+.. ...++..|+.|++||++|+||.+
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-------------------~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-------------------KEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------------------hHHHHHHHHHHHHHHHHHcCCCC
Confidence 799999999999999999999999999999997621 35788999999999999999863
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=120.15 Aligned_cols=104 Identities=36% Similarity=0.492 Sum_probs=99.2
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
.++..|+.||++|.|++||.||.+++.++ |.++..+.|+|.+|++++++..|..+|+.|+.++..+.+||.+++.+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~----P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVY----PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccC----CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 36778999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 921 YEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 921 y~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
...+|+..+|.++++.+|+|.|+..+..
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHHH
Confidence 9999999999999999999999976654
|
|
| >PHA03102 Small T antigen; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-10 Score=113.92 Aligned_cols=63 Identities=27% Similarity=0.445 Sum_probs=58.0
Q ss_pred chhhhcccCCCC--CHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 985 DMYLILGVESSV--SVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 985 dyY~iLGl~~~a--s~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
.+|++|||++++ +..+||+|||++|+++||||.+ .+++|++|++||++|+|+.+
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg------------------------~~e~~k~in~Ay~~L~d~~~ 61 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG------------------------DEEKMKELNTLYKKFRESVK 61 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc------------------------hhHHHHHHHHHHHHHhhHHH
Confidence 689999999999 9999999999999999999964 23689999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|..||.++.
T Consensus 62 r~~yd~~g~ 70 (153)
T PHA03102 62 SLRDLDGEE 70 (153)
T ss_pred hccccccCC
Confidence 999999764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=123.00 Aligned_cols=225 Identities=19% Similarity=0.147 Sum_probs=175.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHH
Q 039706 639 PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIAL 718 (1166)
Q Consensus 639 P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeAL 718 (1166)
|..+.....+|.++..+|-...|+..|++.-..+| +..++ ...|+..+|-
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw~~---------------------vi~CY---------~~lg~~~kae 444 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMWDP---------------------VILCY---------LLLGQHGKAE 444 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHH---------------------HHHHH---------HHhcccchHH
Confidence 45566778889999999999999998887432211 11111 1246677777
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHH
Q 039706 719 GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIF 798 (1166)
Q Consensus 719 e~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA 798 (1166)
....+-++ .|.++.+|..+|.+....--|++|.++.+..-... ...+|
T Consensus 445 ei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA-------------------------------~r~~~ 492 (777)
T KOG1128|consen 445 EINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARA-------------------------------QRSLA 492 (777)
T ss_pred HHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHH-------------------------------HHhhc
Confidence 77777777 56667777777777777766777766655432210 12244
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH
Q 039706 799 KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 799 ~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
...+..++|+++.++++..+. ..+-....|+.+|.++.+.++++.|+++|..++.++ |+++.
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~--------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~----Pd~~e 554 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLE--------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE----PDNAE 554 (777)
T ss_pred cccccchhHHHHHHHHHHHhh--------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC----CCchh
Confidence 555667899999999998633 344456778889999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+|+|++.+|..+++-.+|...+.+|++.+-.++..|.+.-.+....|.+++|+..|.+.+.+...
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999889999999999999999999999999999876443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.7e-08 Score=108.29 Aligned_cols=217 Identities=16% Similarity=0.192 Sum_probs=126.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 039706 647 RAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALF 726 (1166)
Q Consensus 647 ~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALe 726 (1166)
..|.+|...+++++|..+|.++..+. ..+.........+..+..++. ..++++|+.+|++|+.
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~--------------~~~~~~~~Aa~~~~~Aa~~~k---~~~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCY--------------EKLGDKFEAAKAYEEAANCYK---KGDPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHH--------------HHTT-HHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHH--------------HHcCCHHHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHH
Confidence 34778888888888888888876531 112222222333333333332 2366666666666643
Q ss_pred hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHc-C
Q 039706 727 ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL-G 805 (1166)
Q Consensus 727 l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~l-G 805 (1166)
+|...|++..|...+ ..+|.+|... |
T Consensus 103 --------------~y~~~G~~~~aA~~~---------------------------------------~~lA~~ye~~~~ 129 (282)
T PF14938_consen 103 --------------IYREAGRFSQAAKCL---------------------------------------KELAEIYEEQLG 129 (282)
T ss_dssp --------------HHHHCT-HHHHHHHH---------------------------------------HHHHHHHCCTT-
T ss_pred --------------HHHhcCcHHHHHHHH---------------------------------------HHHHHHHHHHcC
Confidence 233444444443332 2355556555 6
Q ss_pred CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC--chh-HHHHHH
Q 039706 806 RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH--PFA-AICFCN 882 (1166)
Q Consensus 806 d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~--p~~-a~a~~n 882 (1166)
++++|+.+|++|.. ..............+..+|.++...++|++|++.|++++....... ... ...+..
T Consensus 130 d~e~Ai~~Y~~A~~--------~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 130 DYEKAIEYYQKAAE--------LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp -HHHHHHHHHHHHH--------HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--------HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 77777777776522 1111111223344566779999999999999999999987532111 222 245677
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCChH-----HHHHHHHHHHH--HhhCHHHHHHHHHHHHHHh
Q 039706 883 RAAAYKALRHITDAIADCNLAIALDGNYL-----KAISRRATLYE--MIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 883 lA~ay~~lGq~eeAi~~lekALeldP~~~-----~A~~~LA~ay~--~lGdyeeAi~~yekALeL~ 941 (1166)
.+.|++..|++..|...+++....+|... .....+-.++. ....+.+|+..|....+++
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 88899999999999999999999998653 34445555554 3456888888888777664
|
|
| >TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.6e-10 Score=133.83 Aligned_cols=67 Identities=39% Similarity=0.641 Sum_probs=61.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||+++++..+||++||+++++||||+.+. ..+..+|++|++||++|+||.+|
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---------------------~eAeekFqeINEAYEVLSDP~KR 60 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---------------------PDAASIFAEINEANDVLSNPKKR 60 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHHhCCHHHH
Confidence 389999999999999999999999999999999752 35778999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||.++.
T Consensus 61 a~YD~fG~ 68 (871)
T TIGR03835 61 ANYDKYGH 68 (871)
T ss_pred HHHhhhcc
Confidence 99999764
|
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. |
| >cd06257 DnaJ DnaJ domain or J-domain | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-09 Score=91.31 Aligned_cols=55 Identities=55% Similarity=0.780 Sum_probs=50.2
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCC
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSD 1059 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd 1059 (1166)
+||++||+++.++.++|+++|++++++||||+.+.. ..+...|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--------------------~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--------------------PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999998621 4688999999999999986
|
DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.6e-07 Score=116.49 Aligned_cols=290 Identities=12% Similarity=0.008 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPD---------FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQK 680 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~---------~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~ 680 (1166)
....++.+++..|++++|...+..+...-+. ...+...+|.++...|++++|..++++++...+.......
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 3456788888999999999999988765321 2345566788899999999999999999986444211000
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHccCHHHHHHH
Q 039706 681 IAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY------SEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 681 ~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~------~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
.. ..... .......|++++|+..+++++..... ....+..+|.+++..|++++|...
T Consensus 491 --------------~~-a~~~l--g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 491 --------------IV-ATSVL--GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred --------------HH-HHHHH--HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 00 01111 11123589999999999999876432 124567889999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
+++++.+....... .. ....+.+..+|.+++..|++++|...+++++..... ..
T Consensus 554 ~~~al~~~~~~~~~-------------~~----~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~--------~~- 607 (903)
T PRK04841 554 QEKAFQLIEEQHLE-------------QL----PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN--------YQ- 607 (903)
T ss_pred HHHHHHHHHHhccc-------------cc----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc--------cC-
Confidence 99999875432110 00 001112345788999999999999999987442111 11
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCch-hHHHH--HHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF-AAICF--CNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~-~a~a~--~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
....+..+..+|.++...|++++|...+.+++.+....... ..... ......+...|+.+.|...+.......+...
T Consensus 608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 687 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN 687 (903)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc
Confidence 11234455667999999999999999999998764221110 11111 1123445567889999888877654322221
Q ss_pred ----HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 912 ----KAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 912 ----~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
..+..+|.++..+|++++|+..|++++....
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENAR 722 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2256789999999999999999999998743
|
|
| >PRK05014 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-09 Score=113.25 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=61.8
Q ss_pred chhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 985 DMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 985 dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
+||.+|||++. ++..+|+++|+++++++|||+.... ++..+..|...|+.|++||++|+||.+
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~---------------~~~~~~~a~~~s~~iN~AY~~L~dp~~ 66 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANA---------------SERERLLAVQQAATINDAYQTLKHPLK 66 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCC---------------cHHHHHHHHHHHHHHHHHHHHHCChhH
Confidence 79999999986 6789999999999999999997521 223455688899999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|..|+..+.
T Consensus 67 Ra~Yll~l~ 75 (171)
T PRK05014 67 RAEYLLSLH 75 (171)
T ss_pred HHHHHHHhc
Confidence 999997553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.5e-07 Score=96.72 Aligned_cols=204 Identities=16% Similarity=0.071 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
-.++.+|.||+...+|..|..+|++.-.+.|...+..+..|..+++.+.+..|+......... |. ........++...
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~~-L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-PA-LHSRVLQLQAAIK 122 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-HH-HHHHHHHHHHHHh
Confidence 347888888888888888888888888888888888888888888888888888877655432 11 1111111111111
Q ss_pred hhh--HHhHHHH------------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 689 LQK--AQKVSEC------------MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 689 L~k--~~~~~e~------------~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
+.. ......+ +...+++ .++.|+|+.|+.-|+.|++.....+-+-+++|.+++..++|..|+.+
T Consensus 123 Yse~Dl~g~rsLveQlp~en~Ad~~in~gCl--lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~ 200 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSENEADGQINLGCL--LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH 200 (459)
T ss_pred cccccCcchHHHHHhccCCCccchhccchhe--eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence 100 0000000 0111111 24579999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccch----hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSES----TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~----~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lek 816 (1166)
..++++..-.+.+.+.+-...--.|-..+ .-+.......+.+.+-++++.++++.|.+.+..
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 99998877666554333222111121111 112222334456678889999999999988765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-08 Score=99.84 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=88.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 039706 629 SDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQN 708 (1166)
Q Consensus 629 ~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~ 708 (1166)
+.|++++.++|++..+++.+|.+++..|++++|+..|++++.++|.+...+..+ +.. +
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l--------------------a~~--~ 61 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGL--------------------AAC--C 61 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH--------------------HHH--H
Confidence 356777778887777777888888888888888888888777777654322211 111 1
Q ss_pred hcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 709 KTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 709 ~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
...+++++|+..+++++.++|.++..++.+|.+|..+|++++|+..+++++++.|++..
T Consensus 62 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 62 QMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 12467777888888888888888899999999999999999999999999999887643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-07 Score=100.02 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=49.7
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh---CH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR---DY 927 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG---dy 927 (1166)
.+|+--+||+.+.+.++.- +.+..+|..++.+|...|+|++|.-++++++-+.|.++..+.++|.+++-+| ++
T Consensus 132 a~GK~l~aIk~ln~YL~~F----~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKF----MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HcCCcHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 3444445555555555544 4555555555555555555555555555555555555555555555555443 34
Q ss_pred HHHHHHHHHHHHHhhhhHH
Q 039706 928 DHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e 946 (1166)
+-|..+|.+++++.|.+..
T Consensus 208 ~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHHHHHhChHhHH
Confidence 4455555555555554433
|
|
| >COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-09 Score=116.17 Aligned_cols=66 Identities=50% Similarity=0.784 Sum_probs=61.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhh-hHHHHHHHHHHHHHHhCCCch
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHK-DAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
.+||.+|||.++++..+|+++||++|++||||+++.. . .|++.|+.|++||++|+|+.+
T Consensus 6 ~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~--------------------~~~a~~~f~~i~~Ay~vLsd~~~ 65 (237)
T COG2214 6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGD--------------------PKVAEEKFKEINEAYEILSDPER 65 (237)
T ss_pred hhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------------------hhHHHHHHHHHHHHHHHhhCHHH
Confidence 5899999999999999999999999999999998632 1 588999999999999999999
Q ss_pred hcccchh
Q 039706 1063 RSRYDLE 1069 (1166)
Q Consensus 1063 R~~YD~~ 1069 (1166)
|..||..
T Consensus 66 r~~yd~~ 72 (237)
T COG2214 66 RAEYDKI 72 (237)
T ss_pred HHHhhhh
Confidence 9999985
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-08 Score=105.84 Aligned_cols=179 Identities=16% Similarity=0.080 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHH
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWR 793 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr 793 (1166)
...++..+-+.....|.+..+ ..++..|...|+-+.+..+..+++...|.+...
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~l------------------------- 102 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDREL------------------------- 102 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHH-------------------------
Confidence 344666677777888999888 999999999999999998888877665543211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..+|+..+..|++.+|+..++++... .+.+...|..+|.+|.+.|++++|...|.+|+++.
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l--------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~---- 164 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARL--------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA---- 164 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcc--------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc----
Confidence 123788889999999999999997443 33456677778999999999999999999999988
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
+..+.++.|+|..|+-.|+++.|..++..+...-+.+..+..+|+.+....|++++|...-.+
T Consensus 165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 888889999999999999999999999999888888899999999999999999988876544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-06 Score=95.06 Aligned_cols=174 Identities=16% Similarity=0.089 Sum_probs=146.8
Q ss_pred hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhh
Q 039706 708 NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHV 787 (1166)
Q Consensus 708 ~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~ 787 (1166)
....++...|..++++.....|.+..+..+.|..+...|.|++|+++|+..|+-+|.+...
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~------------------- 122 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI------------------- 122 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH-------------------
Confidence 3447888999999999988889999999999999999999999999999999988866432
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 788 SFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 788 ~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
+.....+...+|+.-+|++.+..- +..-+.+.++|..++.+|+..|+|++|+-+|++.+-
T Consensus 123 ------~KRKlAilka~GK~l~aIk~ln~Y--------------L~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 123 ------RKRKLAILKAQGKNLEAIKELNEY--------------LDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred ------HHHHHHHHHHcCCcHHHHHHHHHH--------------HHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 223344566788888999888774 334456788889999999999999999999999998
Q ss_pred ccccCCchhHHHHHHHHHHHHHhh---chhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 868 CTVESHPFAAICFCNRAAAYKALR---HITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 868 l~~e~~p~~a~a~~nlA~ay~~lG---q~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
+. |.++.++..+|.+++-+| ++.-|.++|.++|+++|.+..+++.+-.+...+
T Consensus 183 ~~----P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 183 IQ----PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred cC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 87 999999999999998776 477899999999999999999988876665444
|
|
| >PRK01356 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-09 Score=111.24 Aligned_cols=70 Identities=23% Similarity=0.398 Sum_probs=60.1
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.+||.+||+++. ++..+|+++|+++++++|||+... ...+..+...+..|++||++|+||.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~-----------------~~~k~~~~~~s~~in~AY~~L~dp~ 64 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT-----------------LQEKEQNLIIASELNNAYSTLKDAL 64 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------------HHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 389999999986 789999999999999999999742 1234456678999999999999999
Q ss_pred hhcccchhh
Q 039706 1062 KRSRYDLEE 1070 (1166)
Q Consensus 1062 kR~~YD~~~ 1070 (1166)
+|..|+...
T Consensus 65 ~Ra~YlL~l 73 (166)
T PRK01356 65 KRAEYMLLL 73 (166)
T ss_pred HHHHHHHHc
Confidence 999998865
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-07 Score=106.16 Aligned_cols=158 Identities=22% Similarity=0.154 Sum_probs=133.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCC
Q 039706 634 AVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSND 713 (1166)
Q Consensus 634 ALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd 713 (1166)
+...+|....+++..|..++..|++++|+..+...+...|+|+..+....+ + ....++
T Consensus 298 ~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~--------------------i--~~~~nk 355 (484)
T COG4783 298 AKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGD--------------------I--LLEANK 355 (484)
T ss_pred HHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHH--------------------H--HHHcCC
Confidence 334458888999999999999999999999999999999998653332222 1 224789
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHH
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWR 793 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr 793 (1166)
..+|++.+++++.++|..+.+++++|.+|++.|++.+|+..+...+..+|+++..
T Consensus 356 ~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~------------------------- 410 (484)
T COG4783 356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG------------------------- 410 (484)
T ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH-------------------------
Confidence 9999999999999999999999999999999999999999999999999987653
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
|.+|+.+|-.+|+..+|...+ +..|+-.|+|++|+..+..|.+..
T Consensus 411 w~~LAqay~~~g~~~~a~~A~-------------------------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 411 WDLLAQAYAELGNRAEALLAR-------------------------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhCchHHHHHHH-------------------------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 456999999999988887766 456778899999999999998765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.6e-07 Score=99.38 Aligned_cols=69 Identities=10% Similarity=-0.028 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLR---VQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~---A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~ 676 (1166)
+..+|..|..++..|+|++|+..|++++...|.... +.+.+|.+|++++++++|+..|++.+++.|+++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 344677888888889999999999999998887754 448888999999999999999999888888753
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.8e-07 Score=97.74 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~ 676 (1166)
++..+|..|..++..|+|.+|+..|++++...|.. ..+++.+|.+++..|++++|+..|++.++..|.+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 35678899999999999999999999999998865 68999999999999999999999999999999853
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=89.43 Aligned_cols=67 Identities=27% Similarity=0.306 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHhh
Q 039706 876 AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR-DYDHAASDFHRLIALLT 942 (1166)
Q Consensus 876 ~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG-dyeeAi~~yekALeL~P 942 (1166)
++.+|..+|.++..+|++++|+.+|+++|+++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46788899999999999999999999999999999999999999999998 79999999999998876
|
... |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.6e-07 Score=107.43 Aligned_cols=211 Identities=15% Similarity=0.056 Sum_probs=164.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
-.+|..++.+|-...|+..|++. ..|-....||..+|+..+|.....+-++ .|.++..+..+.++.....-
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHH
Confidence 55899999999999999999875 4567778999999999999999888888 44445555555555444333
Q ss_pred HHhHHHHHHH----HHHHHH--hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 692 AQKVSECMQR----SAQLLQ--NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 692 ~~~~~e~~~~----a~~~l~--~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
.+++-++... +..++. ....++|++|..+++..++++|-....|+.+|.+.+++++++.|..+|..++.++|++
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 3333322221 111211 2346899999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhh
Q 039706 766 SPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSA 845 (1166)
Q Consensus 766 ~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~l 845 (1166)
..+ |.+++.+|...++..+|...+.+|+..+.. ....|.+.
T Consensus 553 ~ea-------------------------WnNls~ayi~~~~k~ra~~~l~EAlKcn~~--------------~w~iWENy 593 (777)
T KOG1128|consen 553 AEA-------------------------WNNLSTAYIRLKKKKRAFRKLKEALKCNYQ--------------HWQIWENY 593 (777)
T ss_pred hhh-------------------------hhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--------------CCeeeech
Confidence 766 567899999999999999999998654322 22234445
Q ss_pred hHHHHHcCChHHHHHHHHHHHhccc
Q 039706 846 GNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
-.+..+.|.+++|++.|.+.+.+..
T Consensus 594 mlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 594 MLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhhhhhcccHHHHHHHHHHHHHhhh
Confidence 6677899999999999999988753
|
|
| >KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-09 Score=120.77 Aligned_cols=69 Identities=45% Similarity=0.639 Sum_probs=64.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..|.|.+|||+.++++++||+.|||+|.-.||||+.. +.|++.|+.|..||++|+|+.+
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~---------------------~~A~Eafk~Lq~Afevig~~~k 292 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI---------------------PRAEEAFKKLQVAFEVIGDSVK 292 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC---------------------hhHHHHHHHHHHHHHHhcchhh
Confidence 5799999999999999999999999999999999863 5899999999999999999999
Q ss_pred hcccchhhhh
Q 039706 1063 RSRYDLEEET 1072 (1166)
Q Consensus 1063 R~~YD~~~~~ 1072 (1166)
|++||.....
T Consensus 293 R~eYd~e~~k 302 (490)
T KOG0720|consen 293 RKEYDLELKK 302 (490)
T ss_pred hhHHHHHHHH
Confidence 9999986543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.3e-08 Score=87.58 Aligned_cols=97 Identities=29% Similarity=0.364 Sum_probs=90.5
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
+..+|..++..|++++|+..+++++... |....+++.+|.++...+++++|+..|++++.+.|.+..++..+|.++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 5567999999999999999999999987 666789999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHhh
Q 039706 922 EMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 922 ~~lGdyeeAi~~yekALeL~P 942 (1166)
..+|++++|...+++++++.|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 999999999999999998765
|
|
| >KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-09 Score=110.54 Aligned_cols=73 Identities=33% Similarity=0.610 Sum_probs=64.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
-|.|+|||+.+.+++.|||++||+|.+++||||.+.. ..-++.|.+|+.||+.|+|+..|
T Consensus 99 fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~--------------------~~~e~~~~~I~KAY~aLTD~~sr 158 (230)
T KOG0721|consen 99 FDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE--------------------EGDEEFFEAIAKAYQALTDKKSR 158 (230)
T ss_pred CCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc--------------------chhHHHHHHHHHHHHHhcchhhH
Confidence 4899999999999999999999999999999998631 35677899999999999999999
Q ss_pred cccchhhhhhhhh
Q 039706 1064 SRYDLEEETRNTQ 1076 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~ 1076 (1166)
..|.+++.++.++
T Consensus 159 eN~ekYG~PDGpq 171 (230)
T KOG0721|consen 159 ENWEKYGNPDGPQ 171 (230)
T ss_pred HHHHHhCCCCCcc
Confidence 9999988765443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=106.11 Aligned_cols=190 Identities=18% Similarity=0.095 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhH
Q 039706 713 DAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLW 792 (1166)
Q Consensus 713 d~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~w 792 (1166)
+|++|...|++| |.+|...++|++|...|.++.......... +....
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~-------------------~~Aa~ 76 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDK-------------------FEAAK 76 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-H-------------------HHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCH-------------------HHHHH
Confidence 566666666665 666777777777777777776664432110 11112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc-CChHHHHHHHHHHHhcccc
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA-GRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~-G~yeEAie~y~kALel~~e 871 (1166)
.+...+.+|... ++++|+.+|+++. ...........-+..+..+|.+|... +++++|+++|++|+++...
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~--------~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAI--------EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHH--------HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHH--------HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 233345555444 8888888888762 22222333334466677789999998 9999999999999987532
Q ss_pred --CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC------hH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 872 --SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN------YL-KAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 872 --~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~------~~-~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
.......++.++|.++..+|+|++|+..|++++...-+ .. ..++..+.|++.+||+..|...|++....+|
T Consensus 148 e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 148 EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22334678889999999999999999999999875321 12 3567788899999999999999999987766
Q ss_pred hh
Q 039706 943 KQ 944 (1166)
Q Consensus 943 ~~ 944 (1166)
.-
T Consensus 228 ~F 229 (282)
T PF14938_consen 228 SF 229 (282)
T ss_dssp TS
T ss_pred CC
Confidence 54
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=111.40 Aligned_cols=114 Identities=11% Similarity=0.118 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
+...|..++..|+|.+|+..|.+||+++|++..+|+.+|.+|+.+|++++|+..+++++.++|.+...+..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~--------- 75 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR--------- 75 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH---------
Confidence 46689999999999999999999999999999999999999999999999999999999999986432221
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG 746 (1166)
.+.+ +...|+|++|+..|++++.++|.+..++..++.|...+.
T Consensus 76 -----------lg~~--~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 76 -----------KGTA--CMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred -----------HHHH--HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1111 234799999999999999999999999998888876663
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-05 Score=87.71 Aligned_cols=347 Identities=14% Similarity=0.052 Sum_probs=216.4
Q ss_pred hHHHHHHHHHhch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 039706 595 ASAETIAAQEACE--KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672 (1166)
Q Consensus 595 A~a~~~aAIe~~e--~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~ 672 (1166)
|-+-...|++... -..|...|.+-|+......|...+.+|+.+-|.--+.|+..-..-..+|+..-|.+.|++-+...
T Consensus 92 ARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~ 171 (677)
T KOG1915|consen 92 ARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWE 171 (677)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC
Confidence 3344444544332 23466677788888888888888888888888887888877777778888888888888888888
Q ss_pred CCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHH-------HH----hhcCCCHHHHHHHHHHHHHhCCCh---HHHHHHH
Q 039706 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL-------LQ----NKTSNDAEIALGVIDEALFISSYS---EKLLEMK 738 (1166)
Q Consensus 673 P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~-------l~----~~~~gd~eeALe~lekALel~P~~---~~al~~l 738 (1166)
|+. .++.........+.....+...+.+...+ +. ....|...-|...|++|++.-.++ ..+....
T Consensus 172 P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaF 250 (677)
T KOG1915|consen 172 PDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAF 250 (677)
T ss_pred CcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 873 33444444444444444444333332111 00 234788899999999998865543 3455556
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhccCCCCCc--c-------ccCccccc----------Ccc--chhhhhhhhhHHHHHH
Q 039706 739 AEALFMLRKYEEVIQLCEQTFHFAEKNSPPL--D-------ANGQSMEL----------DSS--ESTKHVSFRLWRCCLI 797 (1166)
Q Consensus 739 A~~y~~lGdyeeAi~~lekALel~p~n~~a~--~-------~~g~~l~l----------d~~--~~~~~~~~~~wr~~lL 797 (1166)
|..-..+..++.|.-+|.-+|..-|.+-... . ..|.-.-+ ... .....+.+..| ..+
T Consensus 251 A~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW--fdy 328 (677)
T KOG1915|consen 251 AEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW--FDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH--HHH
Confidence 6666778889999999999999888762210 0 00000000 000 00001111222 333
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh-HHHHHcCChHHHHHHHHHHHhccccCCchh
Q 039706 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG-NEAFQAGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 798 A~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG-~~~~~~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
..+....|+.+.-.+.|++|+..-|...-. ..=.+-+..|.+.+ ..-+...+.+.+.+.|+.+|++-|...-..
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanvpp~~ek-----r~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtF 403 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANVPPASEK-----RYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTF 403 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccCCchhHH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchH
Confidence 445556799999999999987654431100 00001122222221 223467788889999999999886666677
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhcc
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQ 950 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~ 950 (1166)
+.+|...|....++.+...|...+-.||-+.|.+ +.....-.+-.++++++.....|++.|+..|.+...|..
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 8888888888888888888888888888777753 333334455567777888888888888888877666633
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-08 Score=88.23 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCC
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG-EIEDASKYFRMCLQSGS 673 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG-d~eeAl~~fekALel~P 673 (1166)
+..|+++|.+++.+|+|++|+.+|.++|+++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567889999999999999999999999999999999999999999999 79999999999999987
|
... |
| >PRK03578 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=107.40 Aligned_cols=74 Identities=28% Similarity=0.452 Sum_probs=61.9
Q ss_pred ccchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCC
Q 039706 983 PLDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDP 1060 (1166)
Q Consensus 983 ~~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~ 1060 (1166)
..+||.+||+++. ++..+|+++|++++++||||+.... +...+..+...+..|++||++|+||
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~---------------~~~e~~~a~~~s~~iN~AY~tL~~p 69 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAA---------------GDAEKRVAMQWATRANEAYQTLRDP 69 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---------------CHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 3699999999985 6789999999999999999997531 2233456677789999999999999
Q ss_pred chhcccchhhh
Q 039706 1061 SKRSRYDLEEE 1071 (1166)
Q Consensus 1061 ~kR~~YD~~~~ 1071 (1166)
.+|..|+..+.
T Consensus 70 ~~Ra~Yll~l~ 80 (176)
T PRK03578 70 LKRARYLLHLR 80 (176)
T ss_pred hhHHHHHHHhc
Confidence 99999998553
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-07 Score=98.27 Aligned_cols=181 Identities=15% Similarity=0.081 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 039706 624 MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA 703 (1166)
Q Consensus 624 y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~ 703 (1166)
...|+..+-+....+|++..+ ..++..|...|+-+.+..+..+++...|.+......
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~---------------------- 105 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA---------------------- 105 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH----------------------
Confidence 334666777778889999999 999999999999999999999887777664221100
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccch
Q 039706 704 QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSES 783 (1166)
Q Consensus 704 ~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~ 783 (1166)
........|++..|+..+.++..+.|.+..+|..+|.+|.++|+.++|...|.+++++.|..+..
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~--------------- 170 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSI--------------- 170 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchh---------------
Confidence 11113357999999999999999999999999999999999999999999999999999977553
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHH
Q 039706 784 TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYT 863 (1166)
Q Consensus 784 ~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~ 863 (1166)
..++|..|+..|+++.|..++..+....+. ......+++.+....|++.+|...-.
T Consensus 171 ----------~nNlgms~~L~gd~~~A~~lll~a~l~~~a--------------d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 171 ----------ANNLGMSLLLRGDLEDAETLLLPAYLSPAA--------------DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ----------hhhHHHHHHHcCCHHHHHHHHHHHHhCCCC--------------chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 467889999999999999999886332221 23334556777778888888876655
Q ss_pred HHH
Q 039706 864 AAL 866 (1166)
Q Consensus 864 kAL 866 (1166)
+-+
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 444
|
|
| >PRK00294 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-08 Score=106.98 Aligned_cols=73 Identities=23% Similarity=0.386 Sum_probs=62.6
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.+||.++|+++. .+..+|+++||+++.++|||+.... +...+..+...|..|++||++|+||.
T Consensus 4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~---------------~~~e~~~a~~~s~~IN~AY~~L~~p~ 68 (173)
T PRK00294 4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADA---------------PEREQRLALERSASLNEAYQTLKSPP 68 (173)
T ss_pred CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---------------cHHHHHHHHHHHHHHHHHHHHhCChh
Confidence 589999999987 6689999999999999999997531 23345668889999999999999999
Q ss_pred hhcccchhhh
Q 039706 1062 KRSRYDLEEE 1071 (1166)
Q Consensus 1062 kR~~YD~~~~ 1071 (1166)
+|..|+....
T Consensus 69 ~Ra~YlL~l~ 78 (173)
T PRK00294 69 RRARYLLALS 78 (173)
T ss_pred hhHHHHHHhc
Confidence 9999998653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7e-06 Score=93.82 Aligned_cols=249 Identities=19% Similarity=0.086 Sum_probs=167.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPD-FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~-~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
|..=|.+.-.+|+++.|=.++.++-++.++ ...+++.++.+++..|++..|.....++++..|.++....+...++...
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~ 200 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRL 200 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHh
Confidence 333455666778888888888888777333 3456777788888888888888888888888887777777766666666
Q ss_pred hhHHhHHHHHHHHHHHH-------------------H-hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHH
Q 039706 690 QKAQKVSECMQRSAQLL-------------------Q-NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l-------------------~-~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdye 749 (1166)
+.+..+..........- . ....+..+.=..+++..-..--.++.+...+|.-+..+|+++
T Consensus 201 g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~ 280 (400)
T COG3071 201 GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHD 280 (400)
T ss_pred ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChH
Confidence 66555443333221110 0 000111111111222221122245678888999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 750 EVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
+|.+...++++..-+. . + +..+ -....++.+.=++.+++.+...
T Consensus 281 ~A~~~i~~~Lk~~~D~---------------~-L----------~~~~--~~l~~~d~~~l~k~~e~~l~~h-------- 324 (400)
T COG3071 281 EAQEIIEDALKRQWDP---------------R-L----------CRLI--PRLRPGDPEPLIKAAEKWLKQH-------- 324 (400)
T ss_pred HHHHHHHHHHHhccCh---------------h-H----------HHHH--hhcCCCCchHHHHHHHHHHHhC--------
Confidence 9999999999764321 1 0 1111 1234567777777777753333
Q ss_pred hhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
+.....+..+|..+++.+.|.+|..+|+.||+.. ..+..|..+|.++.++|+..+|.+.++.++.+
T Consensus 325 ------~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-----~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 ------PEDPLLLSTLGRLALKNKLWGKASEALEAALKLR-----PSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ------CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3334667788999999999999999999999874 45677888999999999999999999999854
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-07 Score=90.31 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
+..++.+|..++..|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+.+|++++...|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 3567889999999999999999999999999876 578999999999999999999999998887776
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=101.33 Aligned_cols=194 Identities=15% Similarity=0.157 Sum_probs=150.5
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
..+|.+||+++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|.... ++
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q---------------------Yr 81 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ---------------------YR 81 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH---------------------HH
Confidence 567999999999999999999999999999999999999999999999888775321 11
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhh--------------------hhccchHHHHHHhhhhHHHH
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLI--------------------PLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~--------------------~L~~~~~~a~~l~~lG~~~~ 850 (1166)
...+..++..+.+..|+......... ......+. .-.+....+....+.|-+.+
T Consensus 82 ----lY~AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 ----LYQAQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLY 155 (459)
T ss_pred ----HHHHHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheee
Confidence 23567777788888888776654221 11111111 11222345667788899999
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh----CCC-----------------
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL----DGN----------------- 909 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel----dP~----------------- 909 (1166)
+.|+|++|++-|+.|++.. ...+.+-+++|.|+++.+++..|+++....++. .|.
T Consensus 156 kegqyEaAvqkFqaAlqvs----GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVS----GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred ccccHHHHHHHHHHHHhhc----CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 9999999999999999987 778888999999999999999999998888764 232
Q ss_pred --------hHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 910 --------YLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 910 --------~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
-.+++...+.+++..++++.|.+.+.
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 13567778899999999999887654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=91.84 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=93.8
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISR 916 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~ 916 (1166)
..++.+|..+...|++++|+..|.+++...+.. +....+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 346678999999999999999999999877322 3346789999999999999999999999999998885 678999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 917 RATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+|.++..++++++|+..|+++++..|++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999999999999999999999888644
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.9e-09 Score=111.37 Aligned_cols=67 Identities=37% Similarity=0.682 Sum_probs=61.1
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.++|++|||.+.++..+|++|||++|++||||+++. +++.++|+.|.+||++|.|.+.|
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~---------------------~e~k~~F~~iAtayeilkd~e~r 91 (329)
T KOG0722|consen 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD---------------------PESKKLFVKIATAYEILKDNETR 91 (329)
T ss_pred hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC---------------------chhhhhhhhhhcccccccchhhH
Confidence 489999999999999999999999999999999873 35568999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
..||-..+
T Consensus 92 t~ydyald 99 (329)
T KOG0722|consen 92 TQYDYALD 99 (329)
T ss_pred HhHHHHhc
Confidence 99997554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=99.11 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=83.2
Q ss_pred hccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 832 LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 832 L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
+......+..+..+|..+...|++++|+.+|++++.+.+.. +....++.++|.++..+|++++|+..+.+++.+.|.+.
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 44456677888899999999999999999999999876321 23467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCH
Q 039706 912 KAISRRATLYEMIRDY 927 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdy 927 (1166)
.++..+|.+|..+|+.
T Consensus 107 ~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 107 SALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHHcCCh
Confidence 9999999999988773
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-05 Score=79.85 Aligned_cols=193 Identities=23% Similarity=0.213 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhh
Q 039706 711 SNDAEIALGVIDEALF--ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVS 788 (1166)
Q Consensus 711 ~gd~eeALe~lekALe--l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~ 788 (1166)
.+.+..++..+..++. ..+.....+...+.++..++.+.+++..+..++...+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 131 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA-------------------- 131 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchH--------------------
Confidence 5667777777777765 567777888888999999999999999999988776643111
Q ss_pred hhhHHHHHHHH-HHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 789 FRLWRCCLIFK-SYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 789 ~~~wr~~lLA~-ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
....+. ++...|+++.|+..+.+++...+. .......+...+..+...+++.+|+..+.+++.
T Consensus 132 -----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 132 -----EALLALGALYELGDYEEALELYEKALELDPE-----------LNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 122334 788999999999999987432221 012233344445557888999999999999998
Q ss_pred ccccCCch-hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 868 CTVESHPF-AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 868 l~~e~~p~-~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.. +. ....+..++.++...+++..|+..+..++...|.....+..++..+...+.+++|...+.+++...|.
T Consensus 196 ~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LN----PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hC----cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 87 55 57889999999999999999999999999999987788888888888777899999999999998776
|
|
| >KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-08 Score=114.18 Aligned_cols=69 Identities=55% Similarity=0.741 Sum_probs=61.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|++.+.++..+|++||+++|++|||||++. . +..|+.+|++|++||++|+|+.+|
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~------------------~-~~~~~~~~~~~~ea~~~ls~~~kr 63 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPS------------------P-KEVAEAKFKEIAEAYEVLSDPKKR 63 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCC------------------c-hhhHHHHHhhhhccccccCCHHHh
Confidence 489999999999999999999999999999999752 1 245666999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
..||.++.
T Consensus 64 ~~~d~~~~ 71 (306)
T KOG0714|consen 64 KIYDQYGE 71 (306)
T ss_pred hhccccCc
Confidence 99999876
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.4e-06 Score=91.55 Aligned_cols=290 Identities=14% Similarity=0.108 Sum_probs=193.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAI----DPDF--LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALel----dP~~--~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
.-++.++..+|.|++++...-..+.. +... .+++.++++.+..+-++.+++.+-+..+.+-...+.....
T Consensus 47 G~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g---- 122 (518)
T KOG1941|consen 47 GCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG---- 122 (518)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc----
Confidence 34556667777777776654443332 2212 3567777777777777777777777766653221100000
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
.............+.++++++.|+.|+.+.... ..++..++.++-.+.++++|+-+..+++
T Consensus 123 -------------q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 123 -------------QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred -------------hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 000001111223567899999999999875322 2577889999999999999999999999
Q ss_pred HhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHH
Q 039706 760 HFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVREL 839 (1166)
Q Consensus 760 el~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a 839 (1166)
++-....- + . ...-++...++.++.+|..+|++-.|.++.+++. +.++......-.+
T Consensus 190 ~lv~s~~l-----------~--d--~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~--------klal~~Gdra~~a 246 (518)
T KOG1941|consen 190 ELVNSYGL-----------K--D--WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM--------KLALQHGDRALQA 246 (518)
T ss_pred HHHHhcCc-----------C--c--hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH--------HHHHHhCChHHHH
Confidence 88553321 0 0 1112333445678999999999999999998862 2333344455566
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhH-----HHHHHHHHHHhCCC---
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE--SHPFAAICFCNRAAAYKALRHITD-----AIADCNLAIALDGN--- 909 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~ee-----Ai~~lekALeldP~--- 909 (1166)
..+.-+|.+|...|+.+.|..-|+.|...-.. +.-....++...|.|+..+.-..+ |++.-.+++++...
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~ 326 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA 326 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh
Confidence 77788899999999999999999999875422 222334566667777766655555 88888888887543
Q ss_pred ---hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 910 ---YLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 910 ---~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
-.+.+.+++.+|..+|.-++-...+.++-+..
T Consensus 327 K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 327 KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 24678899999999998888777777766553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.2e-07 Score=112.14 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=92.2
Q ss_pred HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcC
Q 039706 726 FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLG 805 (1166)
Q Consensus 726 el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lG 805 (1166)
..+|.+..++..++.+|...+++++|++.++.+++..|+.... ++.+|.+|+..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~-------------------------yy~~G~l~~q~~ 79 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA-------------------------LYISGILSLSRR 79 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh-------------------------HHHHHHHHHhhc
Confidence 4568888899999999999999999999999888888866443 455777888888
Q ss_pred CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHH
Q 039706 806 RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAA 885 (1166)
Q Consensus 806 d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ 885 (1166)
++.+|... .++ .......++ .++++|...+... +.+-.+++.+|.
T Consensus 80 ~~~~~~lv--~~l----------------------------~~~~~~~~~-~~ve~~~~~i~~~----~~~k~Al~~LA~ 124 (906)
T PRK14720 80 PLNDSNLL--NLI----------------------------DSFSQNLKW-AIVEHICDKILLY----GENKLALRTLAE 124 (906)
T ss_pred chhhhhhh--hhh----------------------------hhcccccch-hHHHHHHHHHHhh----hhhhHHHHHHHH
Confidence 87666555 321 122222233 3444443333322 333445555555
Q ss_pred HHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 886 AYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 886 ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
||.++|++++|...|+++|+++|+++.++.++|..|... +.++|+.++.+|+..
T Consensus 125 ~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 125 AYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555 555555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-06 Score=102.08 Aligned_cols=128 Identities=20% Similarity=0.097 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
+-.+..++..|++++|+..++..+. ..+.+.+.+-..+.+++..++..+|++.+++++.++ |
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~--------------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~----P 371 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIA--------------AQPDNPYYLELAGDILLEANKAKEAIERLKKALALD----P 371 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----C
Confidence 3456666777777777777766522 233345555556777777777777777777777776 6
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
....++.++|.+|++.|++.+|+..++..+..+|+++..|..||.+|..+|+..+|...+-+.+.+
T Consensus 372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 667777777777777777777777777777777777777777777777777777776666665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-07 Score=94.40 Aligned_cols=99 Identities=15% Similarity=0.027 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..+|.+|..++..|++++|+..|+-++.+||.+...|+.||.|+..+|+|++|+..|.+++.++|+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-------------- 101 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-------------- 101 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------------
Confidence 456888999999999999999999999999999999999999999999988888888887665554
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAE 763 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p 763 (1166)
++..+.+.|.|++.+|+.+.|+..|+.++....
T Consensus 102 ------------------------------------------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 102 ------------------------------------------APQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ------------------------------------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 566777888888888888888888888887764
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-07 Score=101.47 Aligned_cols=110 Identities=27% Similarity=0.313 Sum_probs=102.4
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
.+..++..|+.|++.++|..|+..|+++|+........++.+|.|+|.|.+.+|+|..|+.+|.+|+.++|.+.+++++=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 56778888999999999999999999999988777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
|.|++.+.++.+|+.+.+..+.++.+....
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 999999999999999999998887766443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-07 Score=95.52 Aligned_cols=112 Identities=16% Similarity=0.117 Sum_probs=93.8
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKA 913 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A 913 (1166)
.....+..+..+|..+...|+|++|+..|++++.+.+. .+..+.+|+++|.+|..+|++++|+..|++++.++|.+..+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 34456777888899999999999999999999988632 23356799999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------HhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 914 ISRRATLYE-------MIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 914 ~~~LA~ay~-------~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+..+|.+|. .+|++++|+.++++++....+...
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~ 148 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIA 148 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 888888777777777666555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.8e-08 Score=87.95 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=73.7
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
..|+|++|+.+|+++++..+.+ + +...++.+|.||+++|+|++|+..+++ +..+|.+...++.+|.++..+|+|++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~-~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTN-P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGT-H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCC-h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3689999999999999988321 1 677888899999999999999999999 888999999999999999999999999
Q ss_pred HHHHHHH
Q 039706 931 ASDFHRL 937 (1166)
Q Consensus 931 i~~yekA 937 (1166)
+..|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999875
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-07 Score=104.55 Aligned_cols=147 Identities=19% Similarity=0.154 Sum_probs=116.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCC-chhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGG-KMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~-k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
....|..|+..|+|..|...|++++..-.. .....-..-.........+++++.++.++++|.+|+...+++|.++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--- 287 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--- 287 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---
Confidence 345788999999999999999997541110 0000000001111235568899999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH-HHHHHHHHHHhhhh
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA-ASDFHRLIALLTKQ 944 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA-i~~yekALeL~P~~ 944 (1166)
|.+..+++.+|.+|..+++|+.|+.+|++|++++|.+..+...+..+..+..++.+. .+.|.+++...+..
T Consensus 288 -~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 288 -PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred -CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999998888777665 77788888665443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.3e-06 Score=92.51 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHH
Q 039706 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAI 811 (1166)
Q Consensus 732 ~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl 811 (1166)
.+++.+++..+.++-++.+++.+....+.+....+.. ++.+ ....++.++..++.+++++
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~----------~~gq----------~~l~~~~Ahlgls~fq~~L 142 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ----------LGGQ----------VSLSMGNAHLGLSVFQKAL 142 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc----------ccch----------hhhhHHHHhhhHHHHHHHH
Confidence 3678889999999999999999998888774433311 1111 1244888999999999999
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc------CCchhHHHHHHHHH
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE------SHPFAAICFCNRAA 885 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e------~~p~~a~a~~nlA~ 885 (1166)
+.|+.|+.... ......-+...+..+|..+-...+|++|+-+..+|+++-.. +......+++.++.
T Consensus 143 esfe~A~~~A~--------~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 143 ESFEKALRYAH--------NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHhh--------ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 99999854211 11111223445667799999999999999999999886521 12345667888999
Q ss_pred HHHHhhchhHHHHHHHHHHHhC------CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 886 AYKALRHITDAIADCNLAIALD------GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 886 ay~~lGq~eeAi~~lekALeld------P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
++..+|+.-+|.++|++|.++. +.++..+.-+|.+|...|+.+.|..-|+.|+.....
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 9999999999999999998873 456677788999999999999999999999876443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.2e-07 Score=98.90 Aligned_cols=125 Identities=18% Similarity=0.117 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 039706 624 MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA 703 (1166)
Q Consensus 624 y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~ 703 (1166)
.+.-+.-++..|..+|++.+.|..||.+|+.+|++..|...|.+|+++.|+++.....+.+++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL----------------- 200 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL----------------- 200 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------
Confidence 566677788889999999999999999999999999999999999999999876554444432
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 704 QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 704 ~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
+.........++...+++++..+|.+..++..+|..++..|+|.+|+..++..+...|.+.+
T Consensus 201 --~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 201 --YYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred --HHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 11123556788999999999999999999999999999999999999999999999887654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00014 Score=84.34 Aligned_cols=190 Identities=12% Similarity=-0.026 Sum_probs=141.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHH
Q 039706 721 IDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKS 800 (1166)
Q Consensus 721 lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~a 800 (1166)
|+..+..+|.+.++|+.+-.+....|+.+.-.+.|++|+..-|....- ... .-|.-+|.-+ .-..
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ek------------r~W--~RYIYLWinY-alye 375 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEK------------RYW--RRYIYLWINY-ALYE 375 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHH------------HHH--HHHHHHHHHH-HHHH
Confidence 777888899999999999999999999999999999999765532110 000 0011112111 1112
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHH
Q 039706 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICF 880 (1166)
Q Consensus 801 y~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~ 880 (1166)
-+...+.+.+...|+.++..-|++ ....+..|+..|.-..++.+...|.+.+-.||... |.+- ++
T Consensus 376 Ele~ed~ertr~vyq~~l~lIPHk----------kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c----PK~K-lF 440 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDLIPHK----------KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC----PKDK-LF 440 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCcc----------cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC----Cchh-HH
Confidence 245688999999999987655553 22334445555888889999999999999999877 4332 23
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 881 CNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 881 ~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
-..-.+-.++++++.+...|++-|+..|.+..+|...|.+-..+|+.+.|...|+-|+..
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 333355678999999999999999999999999999999999999999999999998853
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-07 Score=82.96 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV 675 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n 675 (1166)
+.+|..++..|+|++|+..|+++++.+|++..+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999999999999999999999999999999999985
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-07 Score=100.46 Aligned_cols=121 Identities=27% Similarity=0.340 Sum_probs=105.8
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
+..+...|+.++...+|..||.+|.+||.++ |..+..|.|+|.||+++++++.+..+|.+|++++|+.+.+++.+|
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~n----P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICIN----PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcC----CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 4456677999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhh
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRL 971 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~L 971 (1166)
..++....|++|+..+++|..+...+.-. . ...+...|+.|+..-
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl~r~~~~~---~-----~~di~~~L~~ak~~~ 130 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSLLREQPFT---F-----GDDIPKALRDAKKKR 130 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhcCCCC---C-----cchHHHHHHHHHhCc
Confidence 99999999999999999999886554321 1 234667777777543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=96.68 Aligned_cols=185 Identities=17% Similarity=0.120 Sum_probs=137.2
Q ss_pred CCCHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSE-KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~-~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
..+|.-|+..++-.+..+.... .+..++|.|++++|+|++|+..|.-+.+. +++++
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~--------------------- 91 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPA--------------------- 91 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCc---------------------
Confidence 6789999999998887765444 67889999999999999999999887763 22221
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh-----------hhhhhhccch-HHHHHHhhhhHHHHHcCChHH
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML-----------ESLIPLAGTV-RELLCRKSAGNEAFQAGRHSE 857 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l-----------e~a~~L~~~~-~~a~~l~~lG~~~~~~G~yeE 857 (1166)
.+ +..++.+++.+|.|.+|.....++....-..-+ +....+.... ...+-.+.++.+.+..-.|.+
T Consensus 92 el--~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQe 169 (557)
T KOG3785|consen 92 EL--GVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQE 169 (557)
T ss_pred cc--chhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHH
Confidence 11 356899999999999999998886331111000 0011111111 112334566777888889999
Q ss_pred HHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 858 AVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 858 Aie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
||+.|++.|.-+ |....+-.++|.||.++.-|+-+.+.+.-.|+..|+.+-|...++..++++
T Consensus 170 AIdvYkrvL~dn----~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 170 AIDVYKRVLQDN----PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHhcC----hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 999999999766 777777788999999999999999999999999999988887777766654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.3e-07 Score=79.50 Aligned_cols=65 Identities=26% Similarity=0.291 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
+++++|.+++..|++++|+..++++++..|....+++.+|.++...+++++|+.+|++++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 46788999999999999999999999999988888899999999988888888888888776665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00021 Score=72.99 Aligned_cols=239 Identities=23% Similarity=0.240 Sum_probs=172.9
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhhhHHhHH
Q 039706 621 LGRMRDALSDCMLAVAIDPD--FLRVQVRAANCHLALGEIEDASKYFRMCLQ--SGSDVCVDQKIAVEASDGLQKAQKVS 696 (1166)
Q Consensus 621 lG~y~eAI~~fekALeldP~--~~~A~~~LA~lyl~lGd~eeAl~~fekALe--l~P~n~~a~~~l~Ea~~~L~k~~~~~ 696 (1166)
.+.+..++..+..++...+. ....+..++..+...+.+..+...+..++. ..+....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 96 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAE------------------- 96 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHH-------------------
Confidence 57788888888888888886 478888999999999999999999988876 2332111
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhccCCCCCccccCcc
Q 039706 697 ECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAE-ALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQS 775 (1166)
Q Consensus 697 e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~-~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~ 775 (1166)
.+...... ....+.+..++..+..++...+.........+. ++...+++++|+..+.+++...|....
T Consensus 97 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------- 165 (291)
T COG0457 97 -ALLNLGLL--LEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNE-------- 165 (291)
T ss_pred -HHHHHHHH--HHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc--------
Confidence 11111111 112456888999999998887776555666666 899999999999999999775542000
Q ss_pred cccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 776 MELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 776 l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
....+..++..+...++++.|+..+.+++...+.. ....+..++..+...+++
T Consensus 166 --------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 166 --------------LAEALLALGALLEALGRYEEALELLEKALKLNPDD-------------DAEALLNLGLLYLKLGKY 218 (291)
T ss_pred --------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------------chHHHHHhhHHHHHcccH
Confidence 01112334455778899999999999974433321 345566678899999999
Q ss_pred HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 856 eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
.+|+..+..++... +.....+..++..+...+.+.+|...+.+++...|. +..++..+...
T Consensus 219 ~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 279 (291)
T COG0457 219 EEALEYYEKALELD----PDNAEALYNLALLLLELGRYEEALEALEKALELDPD----LYNLGLALLLL 279 (291)
T ss_pred HHHHHHHHHHHhhC----cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc----hhhhhHHHHHH
Confidence 99999999999987 556677778888888777899999999999999997 44444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00042 Score=83.16 Aligned_cols=331 Identities=13% Similarity=0.031 Sum_probs=202.4
Q ss_pred CCchhHHHhhhHHhhCcchhH-----HHHHHHHHhchH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHH
Q 039706 576 GDRNSEVDRGQEIKQEPNLAS-----AETIAAQEACEK---WRLSNRAATRMALGRMRDALSDCMLAVAIDP---DFLRV 644 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~-----a~~~aAIe~~e~---~ay~nrA~ayl~lG~y~eAI~~fekALeldP---~~~~A 644 (1166)
.+...+.+.-.-|.++|+... +-....|.-... -.|..+|.-|++.|.+++|...|++++..-- ++..+
T Consensus 208 Sn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~i 287 (835)
T KOG2047|consen 208 SNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQI 287 (835)
T ss_pred chhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHH
Confidence 334455555555666666443 223333332222 2267788888888888888888888887432 22222
Q ss_pred HHHHH-----HHHHHcC-------------ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 039706 645 QVRAA-----NCHLALG-------------EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLL 706 (1166)
Q Consensus 645 ~~~LA-----~lyl~lG-------------d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l 706 (1166)
+-..+ .+...++ +++-.+..|+..+...|-.. .....-++...+.+++.+..
T Consensus 288 fd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l-------NsVlLRQn~~nV~eW~kRV~--- 357 (835)
T KOG2047|consen 288 FDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL-------NSVLLRQNPHNVEEWHKRVK--- 357 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH-------HHHHHhcCCccHHHHHhhhh---
Confidence 21111 1111111 12233333444433333200 00000011111222222221
Q ss_pred HhhcCCCHHHHHHHHHHHHH-hCCCh-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 707 QNKTSNDAEIALGVIDEALF-ISSYS-----EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 707 ~~~~~gd~eeALe~lekALe-l~P~~-----~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
...++..+-+..|.+|+. ++|.. ..+|...|..|...|+.+.|...++++++..=..
T Consensus 358 --l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~--------------- 420 (835)
T KOG2047|consen 358 --LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT--------------- 420 (835)
T ss_pred --hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc---------------
Confidence 125778888999998875 45543 4789999999999999999999999998763211
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhh---hhcc-chHHHHHHhhhhHHHHHcCChH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLI---PLAG-TVRELLCRKSAGNEAFQAGRHS 856 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~---~L~~-~~~~a~~l~~lG~~~~~~G~ye 856 (1166)
+. -....|+..|..-+...+++.|+.++++|......+.+...- +... -.+.+..|...+...-..|-++
T Consensus 421 --v~----dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 421 --VE----DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred --hH----HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 11 011235667888888999999999999987644442211111 1110 1122333444477777888899
Q ss_pred HHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--CChHHHHHH---HHHHHHHhhCHHHHH
Q 039706 857 EAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD--GNYLKAISR---RATLYEMIRDYDHAA 931 (1166)
Q Consensus 857 EAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--P~~~~A~~~---LA~ay~~lGdyeeAi 931 (1166)
.-...|++.|++- -..+.+-.|.|..+..-.-+++|.+.|++.|.+. |.-.+.|.. .....+.--..+.|.
T Consensus 495 stk~vYdriidLr----iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 495 STKAVYDRIIDLR----IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 9999999999876 6677888899999999999999999999999997 444455443 333334445789999
Q ss_pred HHHHHHHHHhhh
Q 039706 932 SDFHRLIALLTK 943 (1166)
Q Consensus 932 ~~yekALeL~P~ 943 (1166)
..|++||+..|-
T Consensus 571 dLFEqaL~~Cpp 582 (835)
T KOG2047|consen 571 DLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHhcCCH
Confidence 999999998883
|
|
| >PRK09430 djlA Dna-J like membrane chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-07 Score=102.21 Aligned_cols=64 Identities=34% Similarity=0.474 Sum_probs=54.7
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCC
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSD 1059 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd 1059 (1166)
..++|.+||+.++++.++||++||+++++||||+.... ..+++..+.|+++|++|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~-------------g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAK-------------GLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCC-------------CCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999997421 12345567899999999999999975
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-06 Score=89.66 Aligned_cols=118 Identities=12% Similarity=0.052 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 606 CEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 606 ~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
...++++++|..|...|++++|+.+|++++.+.|+. ..+++.+|.+|..+|++++|+.+|++++.+.|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344678999999999999999999999999987764 57899999999999999999999999999999876655555
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh
Q 039706 683 VEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS 731 (1166)
Q Consensus 683 ~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~ 731 (1166)
..++..+.+..........+ ...+.+|+.++++++..+|.+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A--------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA--------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH--------HHHHHHHHHHHHHHHhhCchh
Confidence 44444433322221111111 233667788888888888765
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-06 Score=84.88 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=89.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYS---EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKH 786 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~---~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~ 786 (1166)
..+++..+...++..+...|.. ..+.+.+|.+++..|++++|+..|+.++...|+..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-------------------- 82 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-------------------- 82 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH--------------------
Confidence 3788888888899999888877 56778899999999999999999999988654321
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHH
Q 039706 787 VSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAAL 866 (1166)
Q Consensus 787 ~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kAL 866 (1166)
+.......++.+++..|++++|+..++.. .........+..+|.++...|++++|+..|++||
T Consensus 83 --l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 83 --LKPLARLRLARILLQQGQYDEALATLQQI---------------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 11122355888889999999999988662 1112233445557888888888888888888875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-06 Score=106.23 Aligned_cols=138 Identities=12% Similarity=0.022 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHc--CC
Q 039706 607 EKWRLSNRAATRMALGR---MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE--------IEDASKYFRMCLQS--GS 673 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~---y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd--------~eeAl~~fekALel--~P 673 (1166)
+++.+|.+|..|+..+. +..|+.+|++|++++|+++.+|..++.+|..... ...|.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 34557889999987765 8899999999999999999999999998866432 34455555555443 22
Q ss_pred CchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHH
Q 039706 674 DVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQ 753 (1166)
Q Consensus 674 ~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~ 753 (1166)
..+.. +... .+.....|++++|...+++|+.++| +..+|..+|.++...|++++|++
T Consensus 418 ~~~~~-------------------~~al---a~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 418 VLPRI-------------------YEIL---AVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred CChHH-------------------HHHH---HHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 21110 0001 1112236999999999999999999 57899999999999999999999
Q ss_pred HHHHHHHhccCCCC
Q 039706 754 LCEQTFHFAEKNSP 767 (1166)
Q Consensus 754 ~lekALel~p~n~~ 767 (1166)
.|++|+.++|..+.
T Consensus 475 ~~~~A~~L~P~~pt 488 (517)
T PRK10153 475 AYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHhcCCCCch
Confidence 99999999997653
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.9e-07 Score=93.72 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=77.8
Q ss_pred chhHHHHHHHHHhchH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 039706 593 NLASAETIAAQEACEK-------WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYF 665 (1166)
Q Consensus 593 ~~A~a~~~aAIe~~e~-------~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~f 665 (1166)
.-|...|..||+.||. ..|.|||.++++++.+..||.+|.+||+++|.+.+|+.++|.+|..+..|++|+..|
T Consensus 112 eeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDy 191 (271)
T KOG4234|consen 112 EEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDY 191 (271)
T ss_pred HHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3466777888888876 448999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchhH
Q 039706 666 RMCLQSGSDVCVD 678 (1166)
Q Consensus 666 ekALel~P~n~~a 678 (1166)
+++++++|....+
T Consensus 192 Kki~E~dPs~~ea 204 (271)
T KOG4234|consen 192 KKILESDPSRREA 204 (271)
T ss_pred HHHHHhCcchHHH
Confidence 9999999985443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=90.15 Aligned_cols=100 Identities=14% Similarity=0.050 Sum_probs=93.7
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
.......+..|..++..|+|++|...|+-+..++ +.+...|..+|.|+..+++|++|+..|..|..++++++...+
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d----~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD----FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 3456667778999999999999999999998888 888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHH
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIA 939 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALe 939 (1166)
..|.||+.+|+...|+..|+.++.
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999997
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.8e-07 Score=79.60 Aligned_cols=63 Identities=21% Similarity=0.151 Sum_probs=46.5
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 882 NRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 882 nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.+|..++..|++++|+..|+++++.+|.++.+++.+|.++..+|++++|+..|++++++.|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777777777777777777777777777777777765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-05 Score=85.58 Aligned_cols=170 Identities=7% Similarity=-0.052 Sum_probs=113.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKL---LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKH 786 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~a---l~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~ 786 (1166)
..|+|++|+..|++++...|..+.+ .+++|.+|+++++|++|+..+++.++..|+++..
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------------------ 105 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------------ 105 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------------------
Confidence 4799999999999999999987644 4899999999999999999999999999988653
Q ss_pred hhhhhHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 787 VSFRLWRCCLIFKSYFTLG---------------R---LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 787 ~~~~~wr~~lLA~ay~~lG---------------d---~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
.+.++.+|.+++.++ + ..+|+..|++.+..-|+...
T Consensus 106 ----~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y---------------------- 159 (243)
T PRK10866 106 ----DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY---------------------- 159 (243)
T ss_pred ----HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh----------------------
Confidence 122455666654443 1 23455556554443333110
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhh
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRATLYEMIR 925 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA~ay~~lG 925 (1166)
..+|...+..+- ...+.--+.+|..|.+.|.|..|+.-++.+++..|+. .++++.+..+|..+|
T Consensus 160 ------a~~A~~rl~~l~-------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 160 ------TTDATKRLVFLK-------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred ------HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcC
Confidence 111111111110 1112222356777778888888888888888777653 567788888888888
Q ss_pred CHHHHHHHHHH
Q 039706 926 DYDHAASDFHR 936 (1166)
Q Consensus 926 dyeeAi~~yek 936 (1166)
..++|......
T Consensus 227 ~~~~a~~~~~~ 237 (243)
T PRK10866 227 LNAQADKVAKI 237 (243)
T ss_pred ChHHHHHHHHH
Confidence 88887776543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-05 Score=85.10 Aligned_cols=163 Identities=18% Similarity=0.089 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhh
Q 039706 711 SNDAEIALGVIDEALFISSY---SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHV 787 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~---~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~ 787 (1166)
.|+|.+|+..|++++...|. .+.+++.+|.+++..++|++|+..+++.+...|..+..
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------------- 78 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------------- 78 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-------------------
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-------------------
Confidence 56666666666666655543 35778888899999999999999999999888876432
Q ss_pred hhhhHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChH
Q 039706 788 SFRLWRCCLIFKSYFTL-----------GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHS 856 (1166)
Q Consensus 788 ~~~~wr~~lLA~ay~~l-----------Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~ye 856 (1166)
.+.++.+|.+++.+ ....+|+..|+..+..-|+. .-..
T Consensus 79 ---~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S----------------------------~y~~ 127 (203)
T PF13525_consen 79 ---DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS----------------------------EYAE 127 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS----------------------------TTHH
T ss_pred ---hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc----------------------------hHHH
Confidence 11234455554433 22345555555543322221 1111
Q ss_pred HHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhhCHHHH
Q 039706 857 EAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 857 EAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA~ay~~lGdyeeA 930 (1166)
+|...+..+- ...+.--+.+|..|.+.|.|..|+..++.+|+..|+. .+++..++.+|..+|..+.|
T Consensus 128 ~A~~~l~~l~-------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 128 EAKKRLAELR-------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 2222111111 1112223446777888888888888888888887764 35677788888888877744
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.2e-05 Score=88.55 Aligned_cols=273 Identities=13% Similarity=0.072 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH-HHHHhhcCCCHHHHHHH
Q 039706 642 LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA-QLLQNKTSNDAEIALGV 720 (1166)
Q Consensus 642 ~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~-~~l~~~~~gd~eeALe~ 720 (1166)
...|..||..|.+.|.++.|...|++++..--.. .+-.....++..+...--... +..+. ........-+++-.+..
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv-rDFt~ifd~Ya~FEE~~~~~~-me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV-RDFTQIFDAYAQFEESCVAAK-MELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh-hhHHHHHHHHHHHHHHHHHHH-HhhhhhcccChhhhhhHHHHHHH
Confidence 4578999999999999999999999999743221 111112222222221110000 00000 00000111234444555
Q ss_pred HHHHH------------HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hccCCCCCccccCcccccCccchhhhh
Q 039706 721 IDEAL------------FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFH-FAEKNSPPLDANGQSMELDSSESTKHV 787 (1166)
Q Consensus 721 lekAL------------el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALe-l~p~n~~a~~~~g~~l~ld~~~~~~~~ 787 (1166)
|+.++ ..+|.+..-|..+ +-+..++..+-+..|.+|+. .+|..... .
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~G------------------s 385 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVG------------------S 385 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCC------------------C
Confidence 55544 4456666655554 44557889999999998875 34543321 0
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 788 SFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 788 ~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
...+ |..+|..|...|+++.|...++++....-. .-...+..|.+-|..-++..+++.|+.+.++|..
T Consensus 386 ~~~L--w~~faklYe~~~~l~~aRvifeka~~V~y~----------~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 386 PGTL--WVEFAKLYENNGDLDDARVIFEKATKVPYK----------TVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred hhhH--HHHHHHHHHhcCcHHHHHHHHHHhhcCCcc----------chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 1122 456899999999999999999997442221 1122355666678888999999999999999986
Q ss_pred ccc--------cCCch------hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 868 CTV--------ESHPF------AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 868 l~~--------e~~p~------~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
+-. +..|- ...+|...+.....+|-++.....|+++|.+.--.+....+.|..+....-+++|.+.
T Consensus 454 vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 454 VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 531 11221 2456777788888889999999999999999888889999999999999999999999
Q ss_pred HHHHHHHhh--hhHHhh
Q 039706 934 FHRLIALLT--KQIEKS 948 (1166)
Q Consensus 934 yekALeL~P--~~~e~~ 948 (1166)
|++.+.+++ ...+.|
T Consensus 534 YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 534 YERGISLFKWPNVYDIW 550 (835)
T ss_pred HHcCCccCCCccHHHHH
Confidence 999998864 344555
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.4e-06 Score=83.11 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
.|..+...+..+++..+...++..+.-.|+. ..+++.+|.+++..|++++|...|+.++...|+.... .+
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~--~~----- 86 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK--PL----- 86 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH--HH-----
Confidence 4455666667999999999999999999988 6788999999999999999999999999977653110 00
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
..+..+.. ....|++++|+..++. +.-.+..+.++..+|.+|+.+|++++|+..|+++|
T Consensus 87 ---------a~l~LA~~---~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 87 ---------ARLRLARI---LLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---------HHHHHHHH---HHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 01111112 2348999999999976 44456677899999999999999999999999875
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-06 Score=96.42 Aligned_cols=104 Identities=10% Similarity=-0.009 Sum_probs=89.9
Q ss_pred HhhhhHHH-HHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC---hHHHHHHH
Q 039706 842 RKSAGNEA-FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN---YLKAISRR 917 (1166)
Q Consensus 842 l~~lG~~~-~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~---~~~A~~~L 917 (1166)
.+..+..+ +..|+|++|+..|+..+...|.. +..+.+++++|.+|+..|++++|+..|.+++...|+ .+++++.+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34445554 56799999999999999988433 344689999999999999999999999999999877 57899999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|.+|..+|++++|+..|+++++.+|+...
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 99999999999999999999999988643
|
|
| >PTZ00100 DnaJ chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-07 Score=90.02 Aligned_cols=51 Identities=27% Similarity=0.468 Sum_probs=45.8
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhC
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLS 1058 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLs 1058 (1166)
.++|++||+.+.++.++|+++||++++++|||+.+ ....|++|++||++|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG------------------------s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNGG------------------------STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC------------------------CHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999953 2357899999999984
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-05 Score=85.66 Aligned_cols=103 Identities=17% Similarity=0.019 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..++.||..|-.+|-+.-|.-+|.++|.+.|+-+.++..+|.-+...|+|+.|.+.|...++++|.+..+
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya---------- 135 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA---------- 135 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH----------
Confidence 4579999999999999999999999999999999999999999999999999999999999999985321
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHH
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEK 733 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~ 733 (1166)
...+.+..+-.|+|.-|.+-+.+-.+.+|.+|-
T Consensus 136 ------------~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 136 ------------HLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ------------HhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 111222233468888888888888888888763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-06 Score=98.30 Aligned_cols=229 Identities=16% Similarity=0.064 Sum_probs=152.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
.+.++++|+.+|++...+...... .+....+...++..+....+-+.++..++..+.-.... .
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~-~------------- 100 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGE-S------------- 100 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS----C-------------
T ss_pred HHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhcccc-c-------------
Confidence 345788999999999887666442 23345566667766655456666666555443221110 0
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
...+ ....+......|++++|+..+.+. .+.+.......+|+.+++++.|...++.+-+++.+..
T Consensus 101 -----~~~~-~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~---- 165 (290)
T PF04733_consen 101 -----NEIV-QLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI---- 165 (290)
T ss_dssp -----HHHH-HHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH----
T ss_pred -----cHHH-HHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH----
Confidence 0011 111112234579999999888764 5678888899999999999999999988776543210
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHH--HHHHcC--CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFK--SYFTLG--RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG 846 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~--ay~~lG--d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG 846 (1166)
...++. +.+..| .+.+|.-.|++.....+ .....+..++
T Consensus 166 -----------------------l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~--------------~t~~~lng~A 208 (290)
T PF04733_consen 166 -----------------------LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG--------------STPKLLNGLA 208 (290)
T ss_dssp -----------------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----------------SHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC--------------CCHHHHHHHH
Confidence 122333 334444 69999999998533221 2345567789
Q ss_pred HHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhch-hHHHHHHHHHHHhCCChHH
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHI-TDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~-eeAi~~lekALeldP~~~~ 912 (1166)
.+++.+|+|++|.+.+.+|+..+ |.++.++.|++.+...+|+. +.+.+++.+....+|+++-
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~----~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKD----PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999877 88999999999999999998 4566677887778898764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-07 Score=112.60 Aligned_cols=59 Identities=24% Similarity=0.443 Sum_probs=54.7
Q ss_pred cchhhhcccCCCC--CHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESSV--SVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~a--s~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.++|++||+++.+ +..+||++||++|++|||||.+ ++++|++|++||++|+|+.
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG------------------------deekfk~Ln~AYevL~d~~ 66 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG------------------------DEEKMKRLNSLYKKLQEGV 66 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC------------------------cHHHHHHHHHHHHHHhcHH
Confidence 3899999999999 9999999999999999999953 2468999999999999999
Q ss_pred hhccc
Q 039706 1062 KRSRY 1066 (1166)
Q Consensus 1062 kR~~Y 1066 (1166)
+|.+|
T Consensus 67 k~~r~ 71 (647)
T PHA02624 67 KSARQ 71 (647)
T ss_pred Hhhhc
Confidence 99999
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.1e-06 Score=96.96 Aligned_cols=134 Identities=13% Similarity=0.014 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCC
Q 039706 610 RLSNRAATRMALG---RMRDALSDCMLAV---AIDPDFLRVQVRAANCHLAL---------GEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 610 ay~nrA~ayl~lG---~y~eAI~~fekAL---eldP~~~~A~~~LA~lyl~l---------Gd~eeAl~~fekALel~P~ 674 (1166)
-+|.||...+..+ ....|+..|.+|+ .++|.++.+|..+|.|+... .+..+|....++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 5578888887766 4578999999999 99999999999999999865 2456899999999999999
Q ss_pred chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 675 VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 675 n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
++.+...+.-+ + ...++++.|+..|++|+.++|+.+.+++..|.++...|+.++|++.
T Consensus 337 Da~a~~~~g~~--------------------~--~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 337 DGKILAIMGLI--------------------T--GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred CHHHHHHHHHH--------------------H--HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 86654333211 1 1256799999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC
Q 039706 755 CEQTFHFAEKN 765 (1166)
Q Consensus 755 lekALel~p~n 765 (1166)
+++++++.|..
T Consensus 395 i~~alrLsP~~ 405 (458)
T PRK11906 395 IDKSLQLEPRR 405 (458)
T ss_pred HHHHhccCchh
Confidence 99999998854
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-06 Score=94.13 Aligned_cols=104 Identities=13% Similarity=0.030 Sum_probs=82.5
Q ss_pred HHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 609 WRLSNRAATR-MALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 609 ~ay~nrA~ay-l~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
..+|..|..+ +..|+|++|+..|+..+...|+. +.+++.+|.+|+..|++++|+..|++++...|++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s--------- 213 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS--------- 213 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------
Confidence 4456677776 56799999999999999999988 5899999999999999999999999999988873
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
|..+++++.+|.++..+|++++|+..|+++++..|+
T Consensus 214 --------------------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 214 --------------------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred --------------------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 233455556666666666677777766666666665
Q ss_pred C
Q 039706 765 N 765 (1166)
Q Consensus 765 n 765 (1166)
.
T Consensus 250 s 250 (263)
T PRK10803 250 T 250 (263)
T ss_pred C
Confidence 4
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.8e-05 Score=94.29 Aligned_cols=274 Identities=14% Similarity=0.056 Sum_probs=147.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH------HHHhh
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA------SDGLQ 690 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea------~~~L~ 690 (1166)
.|...|.|++|++..+.-=++ ..-..|++.|.-+...++.+.|+++|+++-.. . -....++.+- +..-.
T Consensus 835 lyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h--a-fev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVH--A-FEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh--H-HHHHHHHHhChHHHHHHHHhc
Confidence 444555555555544322111 12357889999999999999999999986321 1 0011111111 11111
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
+-..+..+|. .++. ..|+.+.||.+|..|- -|+.+..+++-+|+.++|.++.++.-..
T Consensus 910 ~d~~L~~WWg---qYlE--S~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA~esgd~--------- 967 (1416)
T KOG3617|consen 910 RDESLYSWWG---QYLE--SVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIAEESGDK--------- 967 (1416)
T ss_pred cchHHHHHHH---HHHh--cccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHHHhcccH---------
Confidence 1122222222 2322 4788888888888763 3566677777788888887766543211
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC------CCchhh-hhhh--hccchH---H
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGN------GGKMLE-SLIP--LAGTVR---E 838 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~------~~k~le-~a~~--L~~~~~---~ 838 (1166)
..++.||+.|...|++.+|+..|.+|..-. ..+.++ .+.. +..... .
T Consensus 968 ---------------------AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~ 1026 (1416)
T KOG3617|consen 968 ---------------------AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVS 1026 (1416)
T ss_pred ---------------------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHH
Confidence 125668888999999999999888863310 000000 0000 000000 0
Q ss_pred H-HHHhhh-------hHHHHHcCChHHHHHHHHH-----HHhcc-ccCC-chhHHHHHHHHHHHHHhhchhHHHHHH---
Q 039706 839 L-LCRKSA-------GNEAFQAGRHSEAVEHYTA-----ALSCT-VESH-PFAAICFCNRAAAYKALRHITDAIADC--- 900 (1166)
Q Consensus 839 a-~~l~~l-------G~~~~~~G~yeEAie~y~k-----ALel~-~e~~-p~~a~a~~nlA~ay~~lGq~eeAi~~l--- 900 (1166)
+ ..+-.+ -..|.+.|.+.+|++..=+ ||++- .+.. ..++.++..-+..+....+|++|+..+
T Consensus 1027 aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1027 AARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 111111 1334444444444442211 11111 1111 234556665666777778888887754
Q ss_pred ---HHHHHhC----------------C---------ChHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 901 ---NLAIALD----------------G---------NYLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 901 ---ekALeld----------------P---------~~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
+.||.+. | .....+..+|.+++.+|.|..|.+-|.+|=
T Consensus 1107 r~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1107 REFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 4444431 1 123578889999999999999999888763
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.4e-06 Score=94.06 Aligned_cols=112 Identities=24% Similarity=0.147 Sum_probs=102.0
Q ss_pred hhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhC
Q 039706 831 PLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH---ITDAIADCNLAIALD 907 (1166)
Q Consensus 831 ~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq---~eeAi~~lekALeld 907 (1166)
.+..++.++.-|..+|.+|+..+++..|...|.+|+.+. |.++.++..+|.+++.... -.+|...++++|.+|
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 356677788889999999999999999999999999999 8999999999998876643 678999999999999
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|.++.+++.+|..++..|+|.+|+..++..+.+.|.+..
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999887744
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7e-05 Score=95.69 Aligned_cols=264 Identities=15% Similarity=0.034 Sum_probs=190.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ-SGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe-l~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
..+.+++-.+-.++|++.+.-+|+..-.|++.-.-++++++.++|.+.+++||. +++.... +++
T Consensus 1433 e~~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee---------------EKL 1497 (1710)
T KOG1070|consen 1433 EERDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE---------------EKL 1497 (1710)
T ss_pred hhcccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH---------------HHH
Confidence 334445555567899999999999999999999999999999999999999997 3333110 111
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcc
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQS 775 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~ 775 (1166)
. .|..+..+.. .-|.-+...+.|++|.+.+ +...+|..+..+|..-+++++|.++|+..++...+..
T Consensus 1498 N-iWiA~lNlEn--~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--------- 1564 (1710)
T KOG1070|consen 1498 N-IWIAYLNLEN--AYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR--------- 1564 (1710)
T ss_pred H-HHHHHHhHHH--hhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh---------
Confidence 1 1111111111 1355666778888887765 3456888899999999999999999999998755221
Q ss_pred cccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 776 MELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 776 l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
.+ |..++..++...+-+.|...+.+|+..-|. .........-|..-|+.|+-
T Consensus 1565 --------------~v--W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk------------~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1565 --------------KV--WIMYADFLLRQNEAEAARELLKRALKSLPK------------QEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred --------------hH--HHHHHHHHhcccHHHHHHHHHHHHHhhcch------------hhhHHHHHHHHHHHhhcCCc
Confidence 12 455788899999999999999998553332 23344444558888999999
Q ss_pred HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--CChHHHHHHHHHHHHHh-hCHHHHHH
Q 039706 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD--GNYLKAISRRATLYEMI-RDYDHAAS 932 (1166)
Q Consensus 856 eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--P~~~~A~~~LA~ay~~l-GdyeeAi~ 932 (1166)
+.+..+|+-.|..+ |....+|.-+...-.+.++...+...|++++.+. |...+.++.+-.-|.+. |+-+.+..
T Consensus 1617 eRGRtlfEgll~ay----PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAY----PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred hhhHHHHHHHHhhC----ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999877 8888999888888888999999999999999875 55666666666666654 44333333
Q ss_pred HHHHHHHH
Q 039706 933 DFHRLIAL 940 (1166)
Q Consensus 933 ~yekALeL 940 (1166)
.=.+|++.
T Consensus 1693 VKarA~EY 1700 (1710)
T KOG1070|consen 1693 VKARAKEY 1700 (1710)
T ss_pred HHHHHHHH
Confidence 33344443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-05 Score=84.43 Aligned_cols=109 Identities=13% Similarity=0.082 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
..+|+++|.++..+|++++|+..|++++.+.|+. ..+|..+|.+|..+|++++|+.+|++++.+.|.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3456889999999999999999999999997763 4689999999999999999999999999999987655444444
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCC-------HHHHHHHHHHHHHhCCCh
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSND-------AEIALGVIDEALFISSYS 731 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd-------~eeALe~lekALel~P~~ 731 (1166)
++..+.+.. ...|+ +.+|+.+|++++..+|.+
T Consensus 115 i~~~~~~~~---------------~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 115 ICHYRGEQA---------------IEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHhhHHH---------------HHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 433332211 12344 456677777777777754
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-06 Score=90.07 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=93.6
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccc----cCC----------chhHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV----ESH----------PFAAICFCNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~----e~~----------p~~a~a~~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
...+...|+.++++|+|.+|+..|..||..-. ... .....++.|.+.|++..|+|-++++.|..+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 44566779999999999999999999986431 111 2235578899999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 905 ALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 905 eldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
..+|.+.+||+.+|.++...=+..+|..+|.++|+++|....
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 999999999999999999999999999999999999887644
|
|
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.5e-07 Score=104.20 Aligned_cols=89 Identities=31% Similarity=0.536 Sum_probs=77.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
-|.|++||+..+++..+||++||++..|+||||.+. ...+.|.+-|+.+++|..||..|.|...|
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~---------------mvn~~rse~Ee~y~~ItkAY~~lTd~k~r 162 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP---------------MVNELRSEYEEKYKTITKAYGLLTDKKRR 162 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCC---------------CChhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 389999999999999999999999999999999863 23566788999999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCC
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRT 1087 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~ 1087 (1166)
+.|=.++.++.++..+.|-..++.
T Consensus 163 enyl~yGtPd~pQhts~gIAlPk~ 186 (610)
T COG5407 163 ENYLNYGTPDSPQHTSEGIALPKV 186 (610)
T ss_pred HHHHhcCCCCCCccccceeecchh
Confidence 999999887777766666655554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.1e-06 Score=80.47 Aligned_cols=95 Identities=28% Similarity=0.354 Sum_probs=86.8
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh----HHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY----LKAISRRA 918 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~----~~A~~~LA 918 (1166)
-..|..+...|+.+.|++.|.++|.+. |..+.+|+|+|.+|.-+|+.++|+.++++|+++.... ..++..+|
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~----P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLA----PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhc----ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 345888899999999999999999998 9999999999999999999999999999999997543 46799999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHh
Q 039706 919 TLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
.+|..+|+-+.|..+|+.|-++-
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhC
Confidence 99999999999999999998773
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-06 Score=80.21 Aligned_cols=81 Identities=28% Similarity=0.372 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSY--SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVS 788 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~--~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~ 788 (1166)
+++|+.|+.+++++++..|. +..+++.+|.||+.+|+|++|+..+++ +...+.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---------------------- 58 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---------------------- 58 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH----------------------
Confidence 58999999999999999995 566788899999999999999999998 66655321
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
...+++|.+++.+|++++|+.+|+++
T Consensus 59 ---~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 ---DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 12346799999999999999999874
|
|
| >TIGR00714 hscB Fe-S protein assembly co-chaperone HscB | Back alignment and domain information |
|---|
Probab=98.26 E-value=1e-06 Score=91.15 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhcccchhhh
Q 039706 996 VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEE 1071 (1166)
Q Consensus 996 as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~~YD~~~~ 1071 (1166)
.+..+|+++|++++.++|||+.... +...+..+...|..|++||++|+||.+|..|+..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~---------------~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASG---------------SAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCC---------------ChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 5678999999999999999997521 122345688899999999999999999999998664
|
This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.4e-05 Score=92.08 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHHHH---HhCCChHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 711 SNDAEIALGVIDEAL---FISSYSEKLLEMKAEALFMLR---------KYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 711 ~gd~eeALe~lekAL---el~P~~~~al~~lA~~y~~lG---------dyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
....+.|+.+|.+|+ .++|....+|..+|.|++..- ...+|.+..+++++++|.+
T Consensus 271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D------------- 337 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD------------- 337 (458)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-------------
Confidence 445678999999999 999999999999999987641 1223333444444443332
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
+.++..+|.++...++++.|
T Consensus 338 ------------------------------------------------------------a~a~~~~g~~~~~~~~~~~a 357 (458)
T PRK11906 338 ------------------------------------------------------------GKILAIMGLITGLSGQAKVS 357 (458)
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHhhcchhhH
Confidence 33344456666667778888
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH-HHHhhCHHHHHHHHHH
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL-YEMIRDYDHAASDFHR 936 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a-y~~lGdyeeAi~~yek 936 (1166)
+..|++|+.++ |..+.+|+.+|.++...|+.++|++.+++|++++|....+-...-.+ .+.-...++|+..|-+
T Consensus 358 ~~~f~rA~~L~----Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 358 HILFEQAKIHS----TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHhhcC----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 88888888887 88888888888888888888888888888888888876665554444 3444556677766644
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.9e-06 Score=76.74 Aligned_cols=69 Identities=17% Similarity=0.347 Sum_probs=49.5
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC-------CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALD-------GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld-------P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
|..+.++.++|.+|..+|+|++|+.+|++++++. |..+.++.++|.+|..+|++++|+..|++++++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 5566777777777777777888877777777652 22356677788888888888888888888877653
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-05 Score=99.00 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc--------CChHHHHH
Q 039706 792 WRCCLIFKSYFTLGR---LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA--------GRHSEAVE 860 (1166)
Q Consensus 792 wr~~lLA~ay~~lGd---~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~--------G~yeEAie 860 (1166)
|.+++.|..|+..++ +..|+.+|++++..+|+. +.++-.++.++... .++..|..
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~--------------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF--------------TYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc--------------HHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 335566766766554 889999999997766663 22222223322221 23456666
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 861 ~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
...+++.+. ..+..+.+|.-+|..+...|++++|+..+++|+.++|+ ..+|..+|.+|...|++++|+..|++|+.+
T Consensus 406 ~~~~a~al~--~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 406 ELDNIVALP--ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHhhhcc--cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 667766642 12556788888999999999999999999999999995 789999999999999999999999999999
Q ss_pred hhhhHH
Q 039706 941 LTKQIE 946 (1166)
Q Consensus 941 ~P~~~e 946 (1166)
+|....
T Consensus 483 ~P~~pt 488 (517)
T PRK10153 483 RPGENT 488 (517)
T ss_pred CCCCch
Confidence 988653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0001 Score=89.52 Aligned_cols=285 Identities=16% Similarity=0.072 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH--------HHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchh
Q 039706 609 WRLSNRAATRMALGRMRDALSDCM--------LAVA---IDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCV 677 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fe--------kALe---ldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~ 677 (1166)
..|-|+|....+..+.+-|.-++- +||+ .+|+.. -...|.+...+|-+++|+..|+++-..+
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~--eakvAvLAieLgMlEeA~~lYr~ckR~D----- 830 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED--EAKVAVLAIELGMLEEALILYRQCKRYD----- 830 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch--hhHHHHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence 457788877777777766655442 2222 244433 3345677788888888888888865421
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHH
Q 039706 678 DQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQ 757 (1166)
Q Consensus 678 a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lek 757 (1166)
.+..+++ ..|.|++|++..+.-=.+. -...|+++|.-+...++.+.|+++|++
T Consensus 831 -----------------------LlNKlyQ--s~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 831 -----------------------LLNKLYQ--SQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred -----------------------HHHHHHH--hcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 1111221 3677777776554422221 235678888888888999999999887
Q ss_pred HHHhccCCCCCccccCcccccCccchhhhhh----hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-------CCchh
Q 039706 758 TFHFAEKNSPPLDANGQSMELDSSESTKHVS----FRLWRCCLIFKSYFTLGRLEEAIAALERHESGN-------GGKML 826 (1166)
Q Consensus 758 ALel~p~n~~a~~~~g~~l~ld~~~~~~~~~----~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~-------~~k~l 826 (1166)
+-...-+. -+.+..++..+..... ..+|+| .|..+...|+.+.|+.+|..|..-- -.-..
T Consensus 884 ~~~hafev-------~rmL~e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 884 AGVHAFEV-------FRMLKEYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKT 954 (1416)
T ss_pred cCChHHHH-------HHHHHhChHHHHHHHHhccchHHHHH--HHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCc
Confidence 52111000 0011112222211110 023444 6777888999999999999975410 00112
Q ss_pred hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhc------cccCCchhHHHH-----------HHHHHHHHH
Q 039706 827 ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSC------TVESHPFAAICF-----------CNRAAAYKA 889 (1166)
Q Consensus 827 e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel------~~e~~p~~a~a~-----------~nlA~ay~~ 889 (1166)
.++..+.....+..+.+.+|..|...|++.+|+..|++|-.. ..++.-.+ .+| ...|.-|..
T Consensus 955 ~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d-~L~nlal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen 955 DKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKD-RLANLALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred hHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHhhcCchhHHHHHHHHHH
Confidence 334445555555666677899999999999999999887443 21211111 111 111222333
Q ss_pred hh-chhHHHHHHHHH------H-----------------HhCC-ChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 890 LR-HITDAIADCNLA------I-----------------ALDG-NYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 890 lG-q~eeAi~~lekA------L-----------------eldP-~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
+| +...|+..|.+| | .++| .+++.+.+-+..+....+|++|+..+-.+
T Consensus 1034 ~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1034 LGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred cchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 43 444455444332 2 1234 35667777788888999999998765433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00064 Score=77.61 Aligned_cols=260 Identities=16% Similarity=0.042 Sum_probs=170.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFL-RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~-~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+..-|++-+..|+|+.|..-|+-.+. +|.-- -.+..|-....++|..+.|+.|-+++....|.-..+....
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~At------- 194 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARAT------- 194 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHH-------
Confidence 33445555566666666666655543 33221 1111112222345666666666666666555532221111
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC---CChH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS---SYSE-----KLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~---P~~~-----~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
+-.....|+|+.||.+++...... +... .++..++..+.. -+...|.....+++++
T Consensus 195 ---------------Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL 258 (531)
T COG3898 195 ---------------LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKL 258 (531)
T ss_pred ---------------HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhc
Confidence 011234799999999998876532 3221 222333333332 3578899999999999
Q ss_pred ccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHH
Q 039706 762 AEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLC 841 (1166)
Q Consensus 762 ~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~ 841 (1166)
.|+..++ ....+.+|+..|+..++-.+++.+-+..+++.
T Consensus 259 ~pdlvPa-------------------------av~AAralf~d~~~rKg~~ilE~aWK~ePHP~---------------- 297 (531)
T COG3898 259 APDLVPA-------------------------AVVAARALFRDGNLRKGSKILETAWKAEPHPD---------------- 297 (531)
T ss_pred CCccchH-------------------------HHHHHHHHHhccchhhhhhHHHHHHhcCCChH----------------
Confidence 9987654 24467899999999999999999766555532
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
++..|....--+.++.-++++-.+. ...|++......++.+-+..|++..|....+.++.+.|. ..++..++.+-
T Consensus 298 ---ia~lY~~ar~gdta~dRlkRa~~L~-slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIe 372 (531)
T COG3898 298 ---IALLYVRARSGDTALDRLKRAKKLE-SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIE 372 (531)
T ss_pred ---HHHHHHHhcCCCcHHHHHHHHHHHH-hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHH
Confidence 2444555555566777777665543 345888999999999999999999999999999999996 45677788888
Q ss_pred HHh-hCHHHHHHHHHHHHHH
Q 039706 922 EMI-RDYDHAASDFHRLIAL 940 (1166)
Q Consensus 922 ~~l-GdyeeAi~~yekALeL 940 (1166)
... ||-.++..++-++++-
T Consensus 373 eAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 373 EAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhccCchHHHHHHHHHHhcC
Confidence 765 9999999999999864
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00033 Score=76.81 Aligned_cols=247 Identities=12% Similarity=0.059 Sum_probs=163.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
.-|+-.|+|..+|....+.-.. +......+.+++.|+.+|.+..-+......- ..|- .
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~l--q------------------ 73 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPL--Q------------------ 73 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHccccccccccccccc-CChH--H------------------
Confidence 4577789999998887775443 3677788889999999999876555433221 1110 0
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccC
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFI--SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANG 773 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel--~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g 773 (1166)
++.....++. ..++.+.-+.-+.+.+.. ...+..++..-|.+|++-+++++|+..+.....+.-
T Consensus 74 --Avr~~a~~~~--~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~---------- 139 (299)
T KOG3081|consen 74 --AVRLLAEYLE--LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEA---------- 139 (299)
T ss_pred --HHHHHHHHhh--CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHH----------
Confidence 0011111111 122223333333333222 223345667778899999999999988776332210
Q ss_pred cccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC
Q 039706 774 QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853 (1166)
Q Consensus 774 ~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G 853 (1166)
..+-..++.++.+++-|...+++....+.+..+. ..+.+|..+ ....+
T Consensus 140 --------------------~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt---------QLA~awv~l---a~gge 187 (299)
T KOG3081|consen 140 --------------------AALNVQILLKMHRFDLAEKELKKMQQIDEDATLT---------QLAQAWVKL---ATGGE 187 (299)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH---------HHHHHHHHH---hccch
Confidence 1234467788888999999998875544432110 112222221 12335
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
.+.+|.-+|++.-+.. +..+.++...|.|++.+++|++|...++.||..++.+++++.++-.+-..+|.-.++...
T Consensus 188 k~qdAfyifeE~s~k~----~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKT----PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred hhhhHHHHHHHHhccc----CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 6889999999987644 677888999999999999999999999999999999999999999999999988777665
Q ss_pred H
Q 039706 934 F 934 (1166)
Q Consensus 934 y 934 (1166)
+
T Consensus 264 ~ 264 (299)
T KOG3081|consen 264 N 264 (299)
T ss_pred H
Confidence 4
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.6e-06 Score=73.17 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=55.7
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchh
Q 039706 618 RMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCV 677 (1166)
Q Consensus 618 yl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~ 677 (1166)
++..|+|++|+..|++++..+|++..+++.+|.||+.+|++++|...+++++..+|+++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 467899999999999999999999999999999999999999999999999999998644
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.4e-05 Score=80.29 Aligned_cols=200 Identities=15% Similarity=0.075 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 039706 642 LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVI 721 (1166)
Q Consensus 642 ~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~l 721 (1166)
+..++.+|.+|-.+|-..-|.-.|.+++.+.|+.+. .++.++.++. ..|+|+.|.+.|
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~--------------------vfNyLG~Yl~--~a~~fdaa~eaF 122 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE--------------------VFNYLGIYLT--QAGNFDAAYEAF 122 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH--------------------HHHHHHHHHH--hcccchHHHHHh
Confidence 456788899999999999999999999999998432 3344444443 379999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHH
Q 039706 722 DEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSY 801 (1166)
Q Consensus 722 ekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay 801 (1166)
+..++++|....++.++|..++.-|+|.-|.+.+.+-.+.+|+++- -.+|.|. -
T Consensus 123 ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf---------------------R~LWLYl-----~ 176 (297)
T COG4785 123 DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF---------------------RSLWLYL-----N 176 (297)
T ss_pred hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH---------------------HHHHHHH-----H
Confidence 9999999999999999999999999999999999998888886542 2344332 1
Q ss_pred HHcCCHHHHHHHHHH-HhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC---CchhH
Q 039706 802 FTLGRLEEAIAALER-HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES---HPFAA 877 (1166)
Q Consensus 802 ~~lGd~eeAl~~lek-Al~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~---~p~~a 877 (1166)
...-+..+|...+.+ +...+. .-+-+.. +-+-.|+..+ ...++++.+-..++ .....
T Consensus 177 E~k~dP~~A~tnL~qR~~~~d~---------------e~WG~~i---V~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LT 237 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAEKSDK---------------EQWGWNI---VEFYLGKISE-ETLMERLKADATDNTSLAEHLT 237 (297)
T ss_pred HhhCCHHHHHHHHHHHHHhccH---------------hhhhHHH---HHHHHhhccH-HHHHHHHHhhccchHHHHHHHH
Confidence 233456667665544 311111 1111110 1111222221 11222222221110 02235
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCC
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP 908 (1166)
.+|+.+|..|..+|+.++|...|+.|+..+-
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 6788899999999999999999999988653
|
|
| >PRK01773 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-06 Score=89.49 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=61.9
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.+||.++|++.. .+...+++.|+++..++|||+.... ++..+..+...-..||+||.+|+||-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~---------------~~~eq~~a~~~ss~iN~AY~tLkdPl 66 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANS---------------SAQEQRLAMQKSAEVNDALQILKDPI 66 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCC---------------CHHHHHHHHHHHHHHHHHHHHHCChH
Confidence 389999999976 8899999999999999999998531 34556678888999999999999999
Q ss_pred hhcccchhh
Q 039706 1062 KRSRYDLEE 1070 (1166)
Q Consensus 1062 kR~~YD~~~ 1070 (1166)
+|..|=..+
T Consensus 67 ~RA~YLL~L 75 (173)
T PRK01773 67 LRAEAIIAL 75 (173)
T ss_pred HHHHHHHHh
Confidence 999996644
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-06 Score=101.87 Aligned_cols=105 Identities=30% Similarity=0.374 Sum_probs=98.7
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
..+...++.++..+.|+.|+..|.+||+++ |..+..+.+++.++.+.+.+..|+.++.+||+++|.+.++|+++|.
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ld----pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELD----PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGT 80 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcC----CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccH
Confidence 345567889999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 920 LYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 920 ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+.+.++.+.+|+.+|+....+.|+.....
T Consensus 81 a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 81 AVMALGEFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHhHHHHHHHHHHHHHhhhcCcCcHHHH
Confidence 99999999999999999999999987654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.1e-06 Score=72.34 Aligned_cols=70 Identities=24% Similarity=0.187 Sum_probs=47.7
Q ss_pred hHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
..+|+..++|++|++++++++.++ |.++..|..+|.+|..+|++.+|+.+|+++++..|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD----PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC----cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 345666777777777777777766 6666777777777777777777777777777777766666555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00053 Score=74.76 Aligned_cols=165 Identities=15% Similarity=0.199 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHH
Q 039706 715 EIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRC 794 (1166)
Q Consensus 715 eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~ 794 (1166)
+..+..+++-+. .+.+.++.++.-++.|.-.+..+.++++.+|...++ ..
T Consensus 166 ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~------------------------L~ 215 (366)
T KOG2796|consen 166 ESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ------------------------LL 215 (366)
T ss_pred hhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHH------------------------HH
Confidence 555666666443 467788999999999999999999999977543221 12
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
..+|.+.++.|+.+.|..++++... ....+.........+++.+.++.-.++|.+|...|++.+..+ +
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek--------~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D----~ 283 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEK--------VTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD----P 283 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--------HHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC----C
Confidence 4588999999999999999997532 122244444456677788888999999999999999999888 8
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH---HHHHHHHHHH
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL---KAISRRATLY 921 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~---~A~~~LA~ay 921 (1166)
.++.+-++.|.|++-+|+..+|++..+.++...|... ...+++-.+|
T Consensus 284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 8889999999999999999999999999999998743 2344454444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0011 Score=82.41 Aligned_cols=231 Identities=14% Similarity=0.058 Sum_probs=153.5
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHH
Q 039706 619 MALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSEC 698 (1166)
Q Consensus 619 l~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~ 698 (1166)
+..+++.+|+..+.+.++..|+..-+....|..+.++|++++|..+++..-.+.+++....
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL------------------- 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL------------------- 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH-------------------
Confidence 4567899999999999999999999999999999999999999977776555555422111
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 699 MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 699 ~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
..+... ++..+++++|..+|++++..+|. .+.++.+-.+|.+.+.|.+-.+.--+..+..|+++..
T Consensus 81 -q~l~~~--y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy---------- 146 (932)
T KOG2053|consen 81 -QFLQNV--YRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY---------- 146 (932)
T ss_pred -HHHHHH--HHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch----------
Confidence 111111 23478899999999999999999 8899999999999999987666655555666655321
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHH---------HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAI---------AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl---------~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
. |..+..++...-..+.+. ...++.+...+ + + ....++..+ -.++
T Consensus 147 ------------f--WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k-~-------~s~aE~~Ly---l~iL 200 (932)
T KOG2053|consen 147 ------------F--WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-K-I-------ESEAEIILY---LLIL 200 (932)
T ss_pred ------------H--HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-c-c-------chHHHHHHH---HHHH
Confidence 1 223333333333333222 22222222111 0 0 011111122 3466
Q ss_pred HHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
..+++|++|.+.+..-+.-- ..+.+...-......+..+++|.+-.+.+.+++..++++
T Consensus 201 ~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 78899999999995443211 113333333445567788999999999999999999987
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=71.76 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=59.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchh
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCV 677 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~ 677 (1166)
..+|+..++|++|+..+++++.++|+++.+|+.+|.+|..+|++.+|+..|+++++..|++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 568999999999999999999999999999999999999999999999999999999998644
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.6e-05 Score=90.83 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=102.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchh
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
+...+...++++.|+..+++....++. + ...++.++...++..+|+..+.++|... |.+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---------------v--~~~LA~v~l~~~~E~~AI~ll~~aL~~~----p~d 233 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---------------V--AVLLARVYLLMNEEVEAIRLLNEALKEN----PQD 233 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---------------H--HHHHHHHHHhcCcHHHHHHHHHHHHHhC----CCC
Confidence 344556678999999999996444432 1 2235788888899999999999999877 788
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
+.++...|..++..++++.|+..+++|+.+.|.....|+.||.+|..+|+|++|+..+..
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999987663
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=94.13 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=62.4
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRV---QVRAANCHLALGEIEDASKYFRMCLQSG 672 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A---~~~LA~lyl~lGd~eeAl~~fekALel~ 672 (1166)
+..+++|+|+|.+|+.+|+|++|+..|++||+++|++..+ |+++|.+|..+|++++|+.+|++|+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4445667789999999999999999999999999999865 9999999999999999999999999973
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.2e-05 Score=86.76 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=94.8
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRA 918 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA 918 (1166)
+++.+..+++.|+|.+|...|..-|+..|.. +..+.++|+||.+++.+|+|++|...|..+++-.|.. +++++.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 6677889999999999999999999987543 6778899999999999999999999999999988765 57899999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.++..+|+.++|...|+++++.+|....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999998744
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.5e-05 Score=76.34 Aligned_cols=98 Identities=16% Similarity=0.022 Sum_probs=86.5
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC---hHHHHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN---YLKAISRR 917 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~---~~~A~~~L 917 (1166)
.++++|.++-..|+.++|+.+|++++.... ..+....++..+|.+|..+|++++|+..+++++...|+ +..+...+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 456679999999999999999999998642 23455779999999999999999999999999999888 77888889
Q ss_pred HHHHHHhhCHHHHHHHHHHHHH
Q 039706 918 ATLYEMIRDYDHAASDFHRLIA 939 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALe 939 (1166)
+.++..+|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999987774
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.4e-06 Score=71.84 Aligned_cols=66 Identities=18% Similarity=0.063 Sum_probs=44.9
Q ss_pred HHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
+..|+|++|+..|++++..+ |.+..+++.+|.||.+.|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 45667777777777777666 6666777777777777777777777777777777776666655554
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.4e-06 Score=95.33 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=50.2
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH---HHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI---CFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~---a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
..+..+..+.++|.+|+..|+|++|+.+|++||+++ |.+.. +|+|+|.||..+|++++|++++++||++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445567777777777777777777777777777776 55553 4777777777777777777777777776
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.6e-05 Score=77.03 Aligned_cols=106 Identities=22% Similarity=0.126 Sum_probs=92.8
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH---HHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL---KAIS 915 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~---~A~~ 915 (1166)
...++..|...++.|+|.+|++.|+......|-. +....+.+.++.+|+..++|++|+..+++-|+++|.++ -+++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3456667999999999999999999998776432 56678889999999999999999999999999999875 5799
Q ss_pred HHHHHHHHhhC---------------HHHHHHHHHHHHHHhhhhH
Q 039706 916 RRATLYEMIRD---------------YDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 916 ~LA~ay~~lGd---------------yeeAi~~yekALeL~P~~~ 945 (1166)
.+|.+++.+.. ..+|...|++.+..+|+..
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 99999999887 8899999999999999864
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00086 Score=73.81 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc
Q 039706 606 CEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV 675 (1166)
Q Consensus 606 ~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n 675 (1166)
.++.-||+.|...+..|+|.+|+..|+.+....|.. .++.+.++.++++.+++++|+..+++-+.+.|.+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence 355668889999999999999999999988887755 5788889999999999999999999998888874
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.3e-05 Score=74.05 Aligned_cols=66 Identities=23% Similarity=0.175 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
.++|++|.++-.+|+.++|+..|++++...... ..+++.+|..|..+|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 356788888888888888888888888865433 568888888888888888888888887776665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.6e-05 Score=71.85 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=60.2
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc---cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV---ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~---e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
..+..+.++|.+|...|+|++|+.+|++++++.. ...+..+.++.++|.+|..+|++++|+.++++|+++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3466788899999999999999999999998732 2334568899999999999999999999999999863
|
... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.9e-05 Score=86.55 Aligned_cols=161 Identities=14% Similarity=0.033 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 039706 733 KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIA 812 (1166)
Q Consensus 733 ~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~ 812 (1166)
.+...+...|+.+.+...+......++.+..+.+++ +.+.+..++..|++.+|.+
T Consensus 207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~-------------------------l~LKsq~eY~~gn~~kA~K 261 (696)
T KOG2471|consen 207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMA-------------------------LLLKSQLEYAHGNHPKAMK 261 (696)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHH-------------------------HHHHHHHHHHhcchHHHHH
Confidence 455666677777777777777776666655433221 3557888999999999999
Q ss_pred HHHHH-hcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh-cc----c---------cCCchhH
Q 039706 813 ALERH-ESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS-CT----V---------ESHPFAA 877 (1166)
Q Consensus 813 ~lekA-l~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe-l~----~---------e~~p~~a 877 (1166)
.+... +...+ ...+-+.......+.++|-++++.+.|.-++.+|.+||. .. . -......
T Consensus 262 lL~~sni~~~~------g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~ 335 (696)
T KOG2471|consen 262 LLLVSNIHKEA------GGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSM 335 (696)
T ss_pred HHHhccccccc------CccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccch
Confidence 98763 11111 111223333456678999999999999999999999995 11 0 1123457
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
.++||.|..|+..|+.-.|.++|.+++...-.++..|+++|.|.+..
T Consensus 336 eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 336 EILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999998754
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.1e-05 Score=82.77 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
+|+.|..++..|+|..|...|..-|+..|+. +.|++.||.+++.+|+|+.|...|..+++-.|+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence 6888999999999999999999999999976 689999999999999999999999999887776
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
.|..++.++.+|.++..+|+.++|...|+++++..|...
T Consensus 211 ----------------------------------------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 211 ----------------------------------------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred ----------------------------------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 355667777888888888888888888888888877654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00037 Score=89.39 Aligned_cols=196 Identities=14% Similarity=0.017 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cCCCCCccccCcccccCccchhhhhhhhhH
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA-EKNSPPLDANGQSMELDSSESTKHVSFRLW 792 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~-p~n~~a~~~~g~~l~ld~~~~~~~~~~~~w 792 (1166)
..+..+-+++.+..+|++.-.|..+...++.+++.++|.+..++||..- +... ..-..+|
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe-------------------eEKLNiW 1500 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE-------------------EEKLNIW 1500 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh-------------------HHHHHHH
Confidence 3345667888999999999999999999999999999999999999642 1110 1112233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
. .+-.....-|.-+.-.+.|++|.+... -...+..+..+|...+++++|.++|+..++.-
T Consensus 1501 i--A~lNlEn~yG~eesl~kVFeRAcqycd---------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--- 1560 (1710)
T KOG1070|consen 1501 I--AYLNLENAYGTEESLKKVFERACQYCD---------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF--- 1560 (1710)
T ss_pred H--HHHhHHHhhCcHHHHHHHHHHHHHhcc---------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh---
Confidence 2 222333444566666778887633221 12345567889999999999999999999865
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhc
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN--YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSN 949 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~--~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~ 949 (1166)
.....+|...|..++...+-+.|...+.+||..-|. +.+....-|.+-++.||-+.+...|+-.+.-+|+..+.|.
T Consensus 1561 -~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~ 1638 (1710)
T KOG1070|consen 1561 -GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWS 1638 (1710)
T ss_pred -cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHH
Confidence 466789999999999999999999999999999998 8888888999999999999999999999999999999884
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.2e-05 Score=88.30 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=69.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchh
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
++++|...++-.+|+..+.+++...+ .....+...+..+...++|+.|+.+.++|+.+. |..
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p--------------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls----P~~ 267 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENP--------------QDSELLNLQAEFLLSKKKYELALEIAKKAVELS----PSE 267 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----chh
Confidence 55666666666666666666532222 224445556888899999999999999999988 999
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
..+|+.||.+|..+|+++.|+..++.+
T Consensus 268 f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 268 FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999887744
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00025 Score=82.55 Aligned_cols=313 Identities=16% Similarity=0.094 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH-HHhCCC------C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLA-VAIDPD------F--LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ 679 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekA-LeldP~------~--~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~ 679 (1166)
.+++..+..++..|+|.+|...+... +...|. . -..|.++|.++++++.|..+..+|.+||+. .+...
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N---~c~qL 317 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN---SCSQL 317 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH---HHHHH
Confidence 45666899999999999999887653 222333 2 235789999999999999999999999961 00000
Q ss_pred HH-HHH-HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC----------
Q 039706 680 KI-AVE-ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK---------- 747 (1166)
Q Consensus 680 ~~-l~E-a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd---------- 747 (1166)
.. +.. -...+...... +..+..+. .+...|+.-.|.++|.+++...-.+|.+|..+|+|.+...+
T Consensus 318 ~~g~~~~~~~tls~nks~-eilYNcG~--~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s 394 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSM-EILYNCGL--LYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSS 394 (696)
T ss_pred hccCCCCcceehhcccch-hhHHhhhH--HHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCC
Confidence 00 000 00000011111 12222222 22348999999999999999999999999999999876421
Q ss_pred ---------------------------------------HHHHHHHHHHHHHhccCCCCCc-------------------
Q 039706 748 ---------------------------------------YEEVIQLCEQTFHFAEKNSPPL------------------- 769 (1166)
Q Consensus 748 ---------------------------------------yeeAi~~lekALel~p~n~~a~------------------- 769 (1166)
.+=|.-+++.+|-+-|.....-
T Consensus 395 ~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~ 474 (696)
T KOG2471|consen 395 LSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHE 474 (696)
T ss_pred cccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCC
Confidence 1123334444444432211000
Q ss_pred ---------cccCcccc----cCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch
Q 039706 770 ---------DANGQSME----LDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV 836 (1166)
Q Consensus 770 ---------~~~g~~l~----ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~ 836 (1166)
...+.-.. ..+.........+...+...+.+-..+|+.-.|+....+.++... + ...
T Consensus 475 e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~---------l-S~~ 544 (696)
T KOG2471|consen 475 EGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD---------L-SKI 544 (696)
T ss_pred CCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh---------h-hhH
Confidence 00000000 000000011112223334455666788999999998888543211 1 111
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc-----------------------c--cCC---------chhHHHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT-----------------------V--ESH---------PFAAICFCN 882 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~-----------------------~--e~~---------p~~a~a~~n 882 (1166)
....-++..|.++.-..+..+|+.++.--+--+ + ... .-...++++
T Consensus 545 ~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~n 624 (696)
T KOG2471|consen 545 YKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFAN 624 (696)
T ss_pred HHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHH
Confidence 223334445777788888888888776522110 0 000 012356788
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 883 RAAAYKALRHITDAIADCNLAIALDG--NYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 883 lA~ay~~lGq~eeAi~~lekALeldP--~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
+|.+|.-++++++|...+..|..+-+ ..++|....-.+-+++|+...|+..+++.
T Consensus 625 La~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 625 LAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 99999999999999999988888876 55677776667777888888888877764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0065 Score=69.69 Aligned_cols=267 Identities=14% Similarity=0.033 Sum_probs=183.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDF--LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~--~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
.|.+-...|+-..|...-.++-.+-..+ +-+++.-+..-+..|+++.|.+.|+..+. +|+.
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt---------------- 152 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET---------------- 152 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH----------------
Confidence 4555666778888888877776544444 34556667778888999999999998764 4441
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
..+-.-+.++.....|+.+.|+.+-+.+-...|.-+.++...-...+..|+|+.|+++++......--..
T Consensus 153 -----RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~----- 222 (531)
T COG3898 153 -----RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK----- 222 (531)
T ss_pred -----HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch-----
Confidence 0112223344455689999999999999999999999988888999999999999999987664321110
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFT-LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~-lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
... -+....++-+.+... .-+...|.....++.+..++ .+-...-.+..++
T Consensus 223 ---------~~a-----eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pd--------------lvPaav~AAralf 274 (531)
T COG3898 223 ---------DVA-----ERSRAVLLTAKAMSLLDADPASARDDALEANKLAPD--------------LVPAAVVAARALF 274 (531)
T ss_pred ---------hhH-----HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc--------------cchHHHHHHHHHH
Confidence 000 000001122222222 23456666666655333332 2223334578899
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH---HhCCChHHHHHHHHHHHHHhhCH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAI---ALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekAL---eldP~~~~A~~~LA~ay~~lGdy 927 (1166)
+.|+..++-..++.+.+.. .+|. ++.+|....--+.++.-++++- .+.|++.+..+.++..-+.-|+|
T Consensus 275 ~d~~~rKg~~ilE~aWK~e--PHP~-------ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 275 RDGNLRKGSKILETAWKAE--PHPD-------IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred hccchhhhhhHHHHHHhcC--CChH-------HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 9999999999999999876 2233 3445555555566666666654 45799999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 039706 928 DHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~ 944 (1166)
..|...-+.+..+.|..
T Consensus 346 ~~ARa~Aeaa~r~~pre 362 (531)
T COG3898 346 SAARAKAEAAAREAPRE 362 (531)
T ss_pred HHHHHHHHHHhhhCchh
Confidence 99999999888887764
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00019 Score=72.60 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~ 676 (1166)
++..+|+.|...+..|+|.+|+..|+.+....|.. ..+.+.||.+|+..+++++|+..+++.++++|.++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 45668899999999999999999999999988754 68999999999999999999999999999999864
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00055 Score=71.37 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=120.3
Q ss_pred HhhCcchhHHHHHHHHHhchHHH-HHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 039706 588 IKQEPNLASAETIAAQEACEKWR-LSNRAATRMALGRMRDALSDCMLAVA-IDPDFLRVQVRAANCHLALGEIEDASKYF 665 (1166)
Q Consensus 588 ik~ep~~A~a~~~aAIe~~e~~a-y~nrA~ayl~lG~y~eAI~~fekALe-ldP~~~~A~~~LA~lyl~lGd~eeAl~~f 665 (1166)
-+++|+...-+...+++..|+.. .+.+|.++..+|++.+|...|++++. +.-.+...++.+|++++..+++..|...+
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35678877777777777777644 68899999999999999999999986 55677889999999999999999999999
Q ss_pred HHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc
Q 039706 666 RMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML 745 (1166)
Q Consensus 666 ekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l 745 (1166)
++..+..|..-.... ...+.+.+ ...|.+.+|...|+.++...|. +......+..+..+
T Consensus 148 e~l~e~~pa~r~pd~------------------~Ll~aR~l--aa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~q 206 (251)
T COG4700 148 EDLMEYNPAFRSPDG------------------HLLFARTL--AAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQ 206 (251)
T ss_pred HHHhhcCCccCCCCc------------------hHHHHHHH--HhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHh
Confidence 999998776211111 11112222 2479999999999999999886 56778889999999
Q ss_pred cCHHHHHHHHHHHHHh
Q 039706 746 RKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 746 GdyeeAi~~lekALel 761 (1166)
|+..+|..-+..+.+.
T Consensus 207 gr~~ea~aq~~~v~d~ 222 (251)
T COG4700 207 GRLREANAQYVAVVDT 222 (251)
T ss_pred cchhHHHHHHHHHHHH
Confidence 9999988777666543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0016 Score=71.55 Aligned_cols=204 Identities=16% Similarity=0.089 Sum_probs=136.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHH--------------HHHHHHHHHHhccCCCCCccccCcc
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEE--------------VIQLCEQTFHFAEKNSPPLDANGQS 775 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyee--------------Ai~~lekALel~p~n~~a~~~~g~~ 775 (1166)
-.|.|.++|...++.-... ........+++.|+.+|+|.. |+..+...++. |.+... ....+
T Consensus 20 Y~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~-e~~~~~--~~~~l 95 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLEL-ESNKKS--ILASL 95 (299)
T ss_pred HhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhC-cchhHH--HHHHH
Confidence 3688888888776654333 667788888999999998764 33333333322 111000 00000
Q ss_pred cc--cCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC
Q 039706 776 ME--LDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853 (1166)
Q Consensus 776 l~--ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G 853 (1166)
.+ .+.... ...+| ...-|.+|...+++++|++.+... ..++.....-.++.+..
T Consensus 96 ~E~~a~~~~~----sn~i~-~l~aa~i~~~~~~~deAl~~~~~~-------------------~~lE~~Al~VqI~lk~~ 151 (299)
T KOG3081|consen 96 YELVADSTDG----SNLID-LLLAAIIYMHDGDFDEALKALHLG-------------------ENLEAAALNVQILLKMH 151 (299)
T ss_pred HHHHHhhccc----hhHHH-HHHhhHHhhcCCChHHHHHHHhcc-------------------chHHHHHHHHHHHHHHH
Confidence 00 000000 00122 234577899999999999998763 11222222356788899
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh----hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL----RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l----Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyee 929 (1166)
+++-|...++++.+++ +-.++..+|.+|..+ +++.+|.-.|+..-+..|-.+..+...|.|++.+++|++
T Consensus 152 r~d~A~~~lk~mq~id------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQID------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHH
Confidence 9999999999999876 223445566666544 458999999999888777778999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHh
Q 039706 930 AASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 930 Ai~~yekALeL~P~~~e~ 947 (1166)
|...++.+|..+++..+.
T Consensus 226 Ae~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 226 AESLLEEALDKDAKDPET 243 (299)
T ss_pred HHHHHHHHHhccCCCHHH
Confidence 999999999988877653
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.7e-06 Score=91.09 Aligned_cols=96 Identities=27% Similarity=0.423 Sum_probs=89.9
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
+..+..++..|.+++||++|+.||.++ |..+.+|..++.+++++++...|+.+|..|+.++|+....|-.++.+..
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~ln----p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELN----PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccC----CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 344667788999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHhh
Q 039706 923 MIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 923 ~lGdyeeAi~~yekALeL~P 942 (1166)
.+|+|++|..+|+.+.+++=
T Consensus 194 llg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HhhchHHHHHHHHHHHhccc
Confidence 99999999999999998743
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=75.25 Aligned_cols=87 Identities=21% Similarity=0.219 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc----------hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH----------ITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq----------~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
|+.|.+.++.....+ |.++..+++=|.+++.+.+ +++|+.-|+.||.++|+..++++.+|.+|..+
T Consensus 7 FE~ark~aea~y~~n----P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN----PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 678999999998888 8899999988888887644 67789999999999999999999999999877
Q ss_pred hC-----------HHHHHHHHHHHHHHhhhhH
Q 039706 925 RD-----------YDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 925 Gd-----------yeeAi~~yekALeL~P~~~ 945 (1166)
+. |++|..+|++|+.+.|.+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 54 6667777777777777654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.3e-05 Score=84.45 Aligned_cols=68 Identities=32% Similarity=0.611 Sum_probs=57.9
Q ss_pred cchhhhcccC---CCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCC
Q 039706 984 LDMYLILGVE---SSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDP 1060 (1166)
Q Consensus 984 ~dyY~iLGl~---~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~ 1060 (1166)
.++|.+|||+ ..++..+|.++.++..++||||+... .|+ ...+.-|+.|..||+||+|+
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa------~g~------------~~~d~fFk~iqkA~evL~D~ 104 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAA------GGN------------KGCDEFFKLIQKAREVLGDR 104 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhc------cCC------------CCcHHHHHHHHHHHHHhccH
Confidence 5899999987 46889999999999999999999631 122 35678899999999999999
Q ss_pred chhcccchh
Q 039706 1061 SKRSRYDLE 1069 (1166)
Q Consensus 1061 ~kR~~YD~~ 1069 (1166)
.+|..||.-
T Consensus 105 ~~R~qyDS~ 113 (379)
T COG5269 105 KLRLQYDSN 113 (379)
T ss_pred HHHhhcccc
Confidence 999999973
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0004 Score=71.86 Aligned_cols=88 Identities=9% Similarity=0.079 Sum_probs=79.6
Q ss_pred HhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhh
Q 039706 707 QNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKH 786 (1166)
Q Consensus 707 ~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~ 786 (1166)
..+..|++++|...|.-+...+|.+++.++.+|.|+..+++|++|+..|..+..+.++++.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p------------------ 107 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP------------------ 107 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc------------------
Confidence 34458999999999999999999999999999999999999999999999999998877654
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039706 787 VSFRLWRCCLIFKSYFTLGRLEEAIAALERHES 819 (1166)
Q Consensus 787 ~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~ 819 (1166)
.+..|.+|+.+|+.+.|+..|+.++.
T Consensus 108 -------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 -------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34589999999999999999998755
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0023 Score=69.11 Aligned_cols=103 Identities=15% Similarity=0.031 Sum_probs=73.1
Q ss_pred hhhHHHHHc-CChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH-------HH
Q 039706 844 SAGNEAFQA-GRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL-------KA 913 (1166)
Q Consensus 844 ~lG~~~~~~-G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~-------~A 913 (1166)
.+|.+|-.. .++++||.+|++|-+... +.....-.++...|..-..+++|.+|+..|+++....-++. ..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 346665544 788888888888866432 12223345666677777789999999999999887654332 23
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
++.-|.|++...|.-.|...+++..+++|.-.+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 455678888888988899999999988887644
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.004 Score=65.18 Aligned_cols=130 Identities=14% Similarity=0.085 Sum_probs=104.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
+.|+..+..+|++.+|..+|++++... -..+...++.+++..+..+++.+|...+++..+.++...
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~-------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r- 158 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGI-------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR- 158 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccc-------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC-
Confidence 468999999999999999999974311 112345567789999999999999999999998875433
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.+.....+|.+|..+|++.+|...|+.++...|. +.+....+..+..+|+..+|...|..+...
T Consensus 159 -~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 159 -SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred -CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3334455688999999999999999999999886 678888899999999999998877766644
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.032 Score=65.73 Aligned_cols=318 Identities=15% Similarity=0.089 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 610 RLSNRAATRMALG--RMRDALSDCMLAVAIDPDF---LRVQVRAANCHL-ALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 610 ay~nrA~ayl~lG--~y~eAI~~fekALeldP~~---~~A~~~LA~lyl-~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
++..+|..+...+ +...+|.+++..+...|.+ ++.++++|.+++ ...+++.|..++++|..+...-+..+....
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf 88 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKF 88 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhh
Confidence 3566788888888 9999999999999988866 456788887664 578999999999999876433222111111
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH----HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE----KLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~----~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
+++ ..+..++-.. ...+..|...+.+++++....+ .+++.+|+++.-..++.-|++.+.--.
T Consensus 89 ~a~-------------SlLa~lh~~~-~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga 154 (629)
T KOG2300|consen 89 QAA-------------SLLAHLHHQL-AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGA 154 (629)
T ss_pred HHH-------------HHHHHHHHHh-cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccc
Confidence 111 1111111111 1255566666777776664443 345566677766777776666532111
Q ss_pred Hhc-cCCCCC-------------------------ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 039706 760 HFA-EKNSPP-------------------------LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAA 813 (1166)
Q Consensus 760 el~-p~n~~a-------------------------~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~ 813 (1166)
... +...+. ...++.+.+....+.....+.+...+.+-..-|...|+...+...
T Consensus 155 ~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~ 234 (629)
T KOG2300|consen 155 ESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPA 234 (629)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHH
Confidence 000 000000 000011111111111111122222222223345667887776666
Q ss_pred HHHHhc-----CCC-----Cchh-----hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC--c--
Q 039706 814 LERHES-----GNG-----GKML-----ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH--P-- 874 (1166)
Q Consensus 814 lekAl~-----~~~-----~k~l-----e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~--p-- 874 (1166)
+++... ..+ .+.+ ....-+....-.+..+..--.--...|-|++|.++-+++|....... +
T Consensus 235 lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~ 314 (629)
T KOG2300|consen 235 LKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLM 314 (629)
T ss_pred HHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccch
Confidence 665322 010 0000 00000101011122222222222466778889888888886542111 1
Q ss_pred ------hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC---CC-------hHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 875 ------FAAICFCNRAAAYKALRHITDAIADCNLAIALD---GN-------YLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 875 ------~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld---P~-------~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
.....+-++..|-.-.|++.+|++....+.+.. |. .+..++.+|.-....+.|++|...|..|+
T Consensus 315 srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~ 394 (629)
T KOG2300|consen 315 SRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEAT 394 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHH
Confidence 123456678888899999999999888777653 43 24456667777777788999999998888
Q ss_pred HHh
Q 039706 939 ALL 941 (1166)
Q Consensus 939 eL~ 941 (1166)
++.
T Consensus 395 k~t 397 (629)
T KOG2300|consen 395 KLT 397 (629)
T ss_pred Hhh
Confidence 764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0077 Score=65.51 Aligned_cols=140 Identities=12% Similarity=0.093 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 039706 642 LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVI 721 (1166)
Q Consensus 642 ~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~l 721 (1166)
...|...+.+|....++++|..++.+|.+-..++. ..-.+...+..+..++. ....+.++..+|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--------------slfhAAKayEqaamLak--e~~klsEvvdl~ 94 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--------------SLFHAAKAYEQAAMLAK--ELSKLSEVVDLY 94 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--------------cHHHHHHHHHHHHHHHH--HHHHhHHHHHHH
Confidence 34566778888888999999998888875332211 11111222222222222 345566667777
Q ss_pred HHHHHhC-----CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHH
Q 039706 722 DEALFIS-----SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCL 796 (1166)
Q Consensus 722 ekALel~-----P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~l 796 (1166)
++|..+. |+....-+.+|.-.+..-+.++|+++|++++.+-...... . ....++..
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~-------------~------ma~el~gk 155 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRD-------------Q------MAFELYGK 155 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchH-------------H------HHHHHHHH
Confidence 7766543 4444444455555666777888888888887764432111 0 01112334
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 039706 797 IFKSYFTLGRLEEAIAALER 816 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lek 816 (1166)
.+++|..+.++++|-..+.+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHH
Confidence 55666666666666665554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0084 Score=64.87 Aligned_cols=173 Identities=14% Similarity=0.045 Sum_probs=97.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCChH------HHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 710 TSNDAEIALGVIDEALFISSYSE------KLLEMKAEALFML-RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~------~al~~lA~~y~~l-GdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
+..+.++|+.++++++++..+-. ..+..+|++|..- .++++||.+|+++-+........ .
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-------------s 151 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-------------S 151 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-------------h
Confidence 35678888888888888765432 3455788888765 99999999999998775432110 0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
...- .+...+..-..+++|.+|+..|++.....-+..+. ....-..++..|.+++-..+.-.|...+
T Consensus 152 sANK------C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL-------Kys~KdyflkAgLChl~~~D~v~a~~AL 218 (288)
T KOG1586|consen 152 SANK------CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL-------KYSAKDYFLKAGLCHLCKADEVNAQRAL 218 (288)
T ss_pred hHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-------HhHHHHHHHHHHHHhHhcccHHHHHHHH
Confidence 0001 11234555567899999999999953322221110 1111223344566667667776666666
Q ss_pred HHHHhccccCC-chhHHHHHHHHHHHH--HhhchhHHHHHHHHHHHhCC
Q 039706 863 TAALSCTVESH-PFAAICFCNRAAAYK--ALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 863 ~kALel~~e~~-p~~a~a~~nlA~ay~--~lGq~eeAi~~lekALeldP 908 (1166)
++..+++|.-. ......+-.|..+.. ....+.+++..|+....+|.
T Consensus 219 eky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~ 267 (288)
T KOG1586|consen 219 EKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQ 267 (288)
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHH
Confidence 77666663211 111222222222221 22345566666665555543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.054 Score=68.39 Aligned_cols=302 Identities=13% Similarity=0.023 Sum_probs=185.4
Q ss_pred HHHHHHHHHHH-HcCChHHHHHHHHHHHHhC--CCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch-hHHH
Q 039706 609 WRLSNRAATRM-ALGRMRDALSDCMLAVAID--PDFL----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC-VDQK 680 (1166)
Q Consensus 609 ~ay~nrA~ayl-~lG~y~eAI~~fekALeld--P~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~-~a~~ 680 (1166)
..++.+|.+|+ ...+++.|...+++++.+. ++.. .+.+.++.+|.+.+... |+..++++++...... ..+.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 44677888888 6788999999999998776 4433 34566788888887777 8888888887432210 0000
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC--CChHH----HHHHHHHHHHHccCHHHHHHH
Q 039706 681 IAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS--SYSEK----LLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 681 ~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~--P~~~~----al~~lA~~y~~lGdyeeAi~~ 754 (1166)
.++..+...+ ....+++..|++.++.+.... ..++. +....+.+++..+..+++++.
T Consensus 139 ----------------~~frll~~~l-~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~ 201 (608)
T PF10345_consen 139 ----------------YAFRLLKIQL-ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLEL 201 (608)
T ss_pred ----------------HHHHHHHHHH-HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 0111110111 111279999999999988765 33332 234456666777878889999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc------CCC--Cc-h
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES------GNG--GK-M 825 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~------~~~--~k-~ 825 (1166)
+++++...... +.++.. .......|.+.+--.++...|++..+...+++... ..+ .. .
T Consensus 202 l~~~~~~~~~~-----------q~~~~~--~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~ 268 (608)
T PF10345_consen 202 LQRAIAQARSL-----------QLDPSV--HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWD 268 (608)
T ss_pred HHHHHHHHhhc-----------ccCCCC--CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence 98886554322 012222 22344455555555567788888777776655321 111 00 0
Q ss_pred hhhhhhh-------------------ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC-------c-----
Q 039706 826 LESLIPL-------------------AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH-------P----- 874 (1166)
Q Consensus 826 le~a~~L-------------------~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~-------p----- 874 (1166)
-+..+++ ....-.+..+.--|..+...+..+.|.+++.+++..-.... +
T Consensus 269 ~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~ 348 (608)
T PF10345_consen 269 EDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSE 348 (608)
T ss_pred CCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHH
Confidence 0001111 11111244455557777788888889888888876532111 0
Q ss_pred ----------hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC---C------ChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 875 ----------FAAICFCNRAAAYKALRHITDAIADCNLAIALD---G------NYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 875 ----------~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld---P------~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
....++..++.+..-++++..|......+.... | -.+..++..|..+...|+.+.|...|.
T Consensus 349 ~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 349 ASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 012344567777888899999999888777653 2 246778889999999999999999999
Q ss_pred HHHHHh
Q 039706 936 RLIALL 941 (1166)
Q Consensus 936 kALeL~ 941 (1166)
+.+-..
T Consensus 429 ~~~~~~ 434 (608)
T PF10345_consen 429 KPRFLL 434 (608)
T ss_pred hhHHhh
Confidence 655443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.043 Score=69.10 Aligned_cols=207 Identities=16% Similarity=0.093 Sum_probs=140.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 710 TSNDAEIALGVIDEALFISSY---------SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~---------~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
...++.+|-..+.++...-+. ...+...+|.+....++.++|+.+.+.++..-|.+..
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~------------- 493 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY------------- 493 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc-------------
Confidence 367788887777776554322 2356678899999999999999999999998776543
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC--ChHHH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG--RHSEA 858 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G--~yeEA 858 (1166)
+.++..+..++.+.+-.|++++|+.+.+.+.+. +.......-.++.....+.++..+| .+++.
T Consensus 494 -------~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~--------a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~ 558 (894)
T COG2909 494 -------RSRIVALSVLGEAAHIRGELTQALALMQQAEQM--------ARQHDVYHLALWSLLQQSEILEAQGQVARAEQ 558 (894)
T ss_pred -------hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH--------HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 234444577899999999999999999886331 1112223344566667788888888 34444
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC----CC--hH-HHHHHHHHHHHHhhCHHHHH
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD----GN--YL-KAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld----P~--~~-~A~~~LA~ay~~lGdyeeAi 931 (1166)
...|...-.......+........++.++..--+++.+.....+.+++- |. .. -+++.++.++...|++++|.
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~ 638 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL 638 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4444443332222334444455556666555555888887777777663 22 22 23358999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 039706 932 SDFHRLIALLTKQ 944 (1166)
Q Consensus 932 ~~yekALeL~P~~ 944 (1166)
..+.+...+.-..
T Consensus 639 ~~l~~~~~l~~~~ 651 (894)
T COG2909 639 AQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHhcCC
Confidence 9999988775443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0017 Score=64.22 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
-+-|.++...|+++.|++.|.+++.. -+..+.+|.+.+..+.-+|+.++|++.+++|+++......
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l--------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCL--------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHh--------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence 44677888999999999999998443 3445778899999999999999999999999999855555
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
....+|+.+|.+|..+|+.+.|..+|+.|-++...++.
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 66778999999999999999999999999988765443
|
|
| >KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.8e-05 Score=77.07 Aligned_cols=66 Identities=32% Similarity=0.551 Sum_probs=58.0
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
.++.|++|.+.+..+.++|++.||++.+-.||||++.. ++.|...|-.+..||..|-|+.-
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd-------------------~~rAqkAFdivkKA~k~l~n~~~ 112 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD-------------------AERAQKAFDIVKKAYKLLENDKI 112 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc-------------------HHHHHHHHHHHHHHHHHHhCHHH
Confidence 46899999999999999999999999999999999743 46899999999999999998886
Q ss_pred hcccc
Q 039706 1063 RSRYD 1067 (1166)
Q Consensus 1063 R~~YD 1067 (1166)
|.+-+
T Consensus 113 rkr~~ 117 (250)
T KOG1150|consen 113 RKRCL 117 (250)
T ss_pred HHHHH
Confidence 55543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.016 Score=64.12 Aligned_cols=173 Identities=15% Similarity=0.080 Sum_probs=107.9
Q ss_pred cCCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYS---EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKH 786 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~---~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~ 786 (1166)
..|+|.+|+..|+.+....|.. ..+.+.++.++++.++|++|+..+++-+.+.|.++.+
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~------------------ 107 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA------------------ 107 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh------------------
Confidence 4899999999999999888754 5889999999999999999999999999999988664
Q ss_pred hhhhhHHHHHHHHHHHHc-----CC---HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 787 VSFRLWRCCLIFKSYFTL-----GR---LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 787 ~~~~~wr~~lLA~ay~~l-----Gd---~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
.+.+++.|.+++.. .+ ..+|+..++..+..-|+..... ++ ..=
T Consensus 108 ----dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~---------dA----------------~~~ 158 (254)
T COG4105 108 ----DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP---------DA----------------KAR 158 (254)
T ss_pred ----hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh---------hH----------------HHH
Confidence 12245566665432 12 2344444444433333211100 00 000
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
+..+...| +.-=..+|..|.+.|.|..|+..++.+++.-|+. .+++..+..+|..+|-.++|... .
T Consensus 159 i~~~~d~L----------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~ 227 (254)
T COG4105 159 IVKLNDAL----------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-A 227 (254)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-H
Confidence 11111111 1112235566777777777777777777765543 45677777777777777777654 3
Q ss_pred HHHHH
Q 039706 936 RLIAL 940 (1166)
Q Consensus 936 kALeL 940 (1166)
++|..
T Consensus 228 ~vl~~ 232 (254)
T COG4105 228 KVLGA 232 (254)
T ss_pred HHHHh
Confidence 44433
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.2 Score=59.38 Aligned_cols=310 Identities=15% Similarity=0.058 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCchhHHHHH
Q 039706 609 WRLSNRAATRMALG-RMRDALSDCMLAVAIDPDFL----RVQVRAANCHLALGEIEDASKYFRMCLQS-GSDVCVDQKIA 682 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG-~y~eAI~~fekALeldP~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel-~P~n~~a~~~l 682 (1166)
.++..+|.+|.... .+..|...+++||++...++ +..++||.++.-..++..|++.+.-.... ++-.....+.+
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ 168 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRML 168 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHH
Confidence 45677899999887 88999999999999876553 56788999999999999999875322221 11111111111
Q ss_pred HHHH-----HHhhhHHhHHHHHHHHHHH-----------------------HHhhcCCCHHHH---HHHHHHHHHh-CCC
Q 039706 683 VEAS-----DGLQKAQKVSECMQRSAQL-----------------------LQNKTSNDAEIA---LGVIDEALFI-SSY 730 (1166)
Q Consensus 683 ~Ea~-----~~L~k~~~~~e~~~~a~~~-----------------------l~~~~~gd~eeA---Le~lekALel-~P~ 730 (1166)
.-+. ..-.+...+......++.. ..+...|+...+ +..++..+.. .+.
T Consensus 169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence 0000 0000111111111111111 112234444443 3334433321 111
Q ss_pred ------------hHH--HHHH----HHHHH-------HHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhh
Q 039706 731 ------------SEK--LLEM----KAEAL-------FMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTK 785 (1166)
Q Consensus 731 ------------~~~--al~~----lA~~y-------~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~ 785 (1166)
.+. .|.- -+.+| +..|-+++|+++-++++....+.... +. ...-
T Consensus 249 ~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~----------d~-~sri 317 (629)
T KOG2300|consen 249 SRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQA----------DL-MSRI 317 (629)
T ss_pred CCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccc----------cc-hhHH
Confidence 011 1111 11222 23477889999999988775443332 10 0011
Q ss_pred hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 786 HVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES---GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 786 ~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~---~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
...++...+-.++.+-.-.|++.+|+..+..+.. ..+.+ +......+..+..+|.....-+.|+.|...|
T Consensus 318 lsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~-------~Llr~~~~~ih~LlGlys~sv~~~enAe~hf 390 (629)
T KOG2300|consen 318 LSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTP-------LLLRAHEAQIHMLLGLYSHSVNCYENAEFHF 390 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCch-------HHHHHhHHHHHHHHhhHhhhcchHHHHHHHH
Confidence 1122223344566777889999999998887533 22221 2223344556677788888999999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-hCCCh----------HHHHHHHHHHHHHhhCHHHHH
Q 039706 863 TAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA-LDGNY----------LKAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe-ldP~~----------~~A~~~LA~ay~~lGdyeeAi 931 (1166)
..|+++. +.....+.+-.|+|.+|...++-+. +.++++ +.|.+ ..+++-.|...+..+++.||.
T Consensus 391 ~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK 465 (629)
T KOG2300|consen 391 IEATKLT-ESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAK 465 (629)
T ss_pred HHHHHhh-hHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999875 2223445666789999999776443 333333 34442 346777888888999999999
Q ss_pred HHHHHHHHHh
Q 039706 932 SDFHRLIALL 941 (1166)
Q Consensus 932 ~~yekALeL~ 941 (1166)
..+++.+++.
T Consensus 466 ~~l~e~Lkma 475 (629)
T KOG2300|consen 466 RFLRETLKMA 475 (629)
T ss_pred HHHHHHHhhc
Confidence 9999999875
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0005 Score=77.31 Aligned_cols=90 Identities=26% Similarity=0.409 Sum_probs=72.8
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
.|.-|+..|...|+.+-.+... .+..|.|||++.+.+|+|..||.+|.+|+.++|.+.+++++-|.|++.+
T Consensus 96 ryk~A~~~Yt~Glk~kc~D~dl---------navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 96 RYKDAVESYTEGLKKKCADPDL---------NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHHHHHHHHhhcCCCccH---------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 3455666666666644332211 1235899999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCC
Q 039706 656 GEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~ 674 (1166)
.++++|..+.+..++++-+
T Consensus 167 e~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHhhhhhhhHH
Confidence 9999999999998876544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00097 Score=72.79 Aligned_cols=138 Identities=10% Similarity=0.025 Sum_probs=112.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cC
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ES 872 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~ 872 (1166)
+.++.++.-.++|.-.+..+.+.+..++ +.+......+|.+.++.|+.+.|..+|++.-+.+. ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~-------------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~ 247 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYP-------------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG 247 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCC-------------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc
Confidence 4466677778899999999988654332 22344455679999999999999999996543321 12
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
......+..+.+.+|.-.+++..|...+.+++..||.++.+..+.|.|++.+|+..+|++.++.+++..|...
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3455678888999999999999999999999999999999999999999999999999999999999988764
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00012 Score=86.07 Aligned_cols=98 Identities=22% Similarity=0.229 Sum_probs=85.0
Q ss_pred CCCCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039706 574 LKGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHL 653 (1166)
Q Consensus 574 ~~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl 653 (1166)
.+.++.|+.-+-++|.++||.|.-+ .+||.+++..++|..|+.++.+||+++|...++|++.|.++.
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~-------------anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYF-------------ANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeee-------------chhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 3556788888888888888866444 459999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 654 ALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 654 ~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
.++++.+|+..|++...+.|+.....+.+.|
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 9999999999999999999997665555444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.063 Score=62.23 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHh------hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 875 FAAICFCNRAAAYKAL------RHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~l------Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
..+.++..+|.-...+ +..++++..|..|+.++|...++|+.+|..+..+
T Consensus 250 ~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 250 LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 3456677777777777 7889999999999999999999999999888755
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.011 Score=64.38 Aligned_cols=173 Identities=13% Similarity=0.054 Sum_probs=120.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDF------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
|..-|.+|....+|++|..++.+|++-..++ +++|-..|.++..+..+.++..+|++|..+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l------------- 100 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL------------- 100 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------------
Confidence 4555677888899999999999999654433 567888888888999999999999998764
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
+..-+..+.+...+.++...+. ..+.++|+.+|++++.+-... .+.+...+++|.++.++.+|...+.+-
T Consensus 101 -Y~E~GspdtAAmaleKAak~le---nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 101 -YVECGSPDTAAMALEKAAKALE---NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred -HHHhCCcchHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 2223333444555666666664 688999999999998764322 356677888999999999998877765
Q ss_pred HHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039706 759 FHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES 819 (1166)
Q Consensus 759 Lel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~ 819 (1166)
..+.-.... -+.. ...+.....+|+...+|..|..+++...+
T Consensus 177 ~~~~~~~~~-----------y~~~--------~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 177 GVAADKCDA-----------YNSQ--------CKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hhHHHHHhh-----------cccH--------HHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 443221100 0000 00112233456667799999999988544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.018 Score=69.89 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
+.+..+|.-|...|+..+|...|-+|-
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 566778888888888888877765543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.19 Score=63.32 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=68.1
Q ss_pred chhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 039706 578 RNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE 657 (1166)
Q Consensus 578 ~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd 657 (1166)
..|.....+-+++-|+..-+-.. .|.++.++|++++|..+++..-...+++...+--+-.||..+++
T Consensus 26 kkal~~~~kllkk~Pn~~~a~vL-------------kaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNALYAKVL-------------KALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHH-------------HHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence 34445555556666765444444 78899999999999977777666778888888999999999999
Q ss_pred hHHHHHHHHHHHHcCCC
Q 039706 658 IEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 658 ~eeAl~~fekALel~P~ 674 (1166)
+++|...|++++..+|.
T Consensus 93 ~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS 109 (932)
T ss_pred hhHHHHHHHHHHhhCCc
Confidence 99999999999999998
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.033 Score=69.43 Aligned_cols=279 Identities=14% Similarity=-0.017 Sum_probs=179.5
Q ss_pred chhHHHHHHHHHhchHHHHHHHHHHHHHc-----CChHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcC-----C
Q 039706 593 NLASAETIAAQEACEKWRLSNRAATRMAL-----GRMRDALSDCMLAVA-----IDPDFLRVQVRAANCHLALG-----E 657 (1166)
Q Consensus 593 ~~A~a~~~aAIe~~e~~ay~nrA~ayl~l-----G~y~eAI~~fekALe-----ldP~~~~A~~~LA~lyl~lG-----d 657 (1166)
..+..++..+-+.-...+.+.+|.+|+.- .+.+.|+.+|+.+.. ..-.++.+.+.+|.+|.... +
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcccc
Confidence 34445566556666667778888888875 589999999999977 11225668899999999853 6
Q ss_pred hHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhCCChHHHHH
Q 039706 658 IEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKT-SNDAEIALGVIDEALFISSYSEKLLE 736 (1166)
Q Consensus 658 ~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~-~gd~eeALe~lekALel~P~~~~al~ 736 (1166)
+..|+.+|.++..+...+. ...++.++.... ..++..|..+|..|... ....+.+
T Consensus 309 ~~~A~~~~~~aA~~g~~~a----------------------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~ 364 (552)
T KOG1550|consen 309 YEKALKLYTKAAELGNPDA----------------------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIY 364 (552)
T ss_pred HHHHHHHHHHHHhcCCchH----------------------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHH
Confidence 7889999999988764421 112222222222 35688999999998765 4567888
Q ss_pred HHHHHHHH----ccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHH-cCCHHHHH
Q 039706 737 MKAEALFM----LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT-LGRLEEAI 811 (1166)
Q Consensus 737 ~lA~~y~~----lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~-lGd~eeAl 811 (1166)
.+|.||.. ..+...|..++.++.+..+ +.+ ...++..+.. .+.+..++
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A-------------------------~~~~~~~~~~g~~~~~~~~ 417 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKGN--PSA-------------------------AYLLGAFYEYGVGRYDTAL 417 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhh-------------------------HHHHHHHHHHccccccHHH
Confidence 88888875 3578999999999987752 111 1122322222 26666666
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH-HH---cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHH
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA-FQ---AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAY 887 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~-~~---~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay 887 (1166)
..+.......- ......+..+....... .. ..+...+...|.++.. ..+..+.+.+|.+|
T Consensus 418 ~~~~~~a~~g~----------~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~------~g~~~a~~~lgd~y 481 (552)
T KOG1550|consen 418 ALYLYLAELGY----------EVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA------QGNADAILKLGDYY 481 (552)
T ss_pred HHHHHHHHhhh----------hHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh------ccCHHHHhhhccee
Confidence 55544211000 00000011111111011 11 2256677778877765 45667778888887
Q ss_pred HHh----hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHh
Q 039706 888 KAL----RHITDAIADCNLAIALDGNYLKAISRRATLYEMI---RDYDHAASDFHRLIALL 941 (1166)
Q Consensus 888 ~~l----Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l---GdyeeAi~~yekALeL~ 941 (1166)
..- .+++.|...|.+|.... +.+.+++|.++..- ..+..|..+|.++.+..
T Consensus 482 ~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 482 YYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred eecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 754 45899999999998877 89999999999742 22788888888887653
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.001 Score=71.96 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=71.4
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
-|+.++..+..+|..+|..+ .+|.|||.+|+++.+++.+..+|.+|++++|+.+++++.+|.+++..
T Consensus 25 ~y~~ai~~y~raI~~nP~~~-------------~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVA-------------SYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred hhchHHHHHHHHHhcCCCcc-------------hhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 35566666666666555533 45677999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHc
Q 039706 656 GEIEDASKYFRMCLQS 671 (1166)
Q Consensus 656 Gd~eeAl~~fekALel 671 (1166)
..|++|+..+.+|+.+
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999999765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0057 Score=72.56 Aligned_cols=207 Identities=15% Similarity=0.051 Sum_probs=124.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc---ccCccccc-Cccchhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD---ANGQSMEL-DSSESTK 785 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~---~~g~~l~l-d~~~~~~ 785 (1166)
+..+.+.-++...+||+++|+++.+|..+|+- ...-..+|..+|+++++.......... ..+..... .......
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 35778888999999999999999999888763 233467788888888876554322100 00000000 0000001
Q ss_pred hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHH
Q 039706 786 HVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAA 865 (1166)
Q Consensus 786 ~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kA 865 (1166)
..+. -..+|.+...+|+.++|++.++..++..+ .......+.++...+...+.|.++...+.+.
T Consensus 258 ~~y~----KrRLAmCarklGr~~EAIk~~rdLlke~p------------~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 258 LVYA----KRRLAMCARKLGRLREAIKMFRDLLKEFP------------NLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhh----HHHHHHHHHHhCChHHHHHHHHHHHhhCC------------ccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1111 25588888999999999999988643222 1223445666778888888998888877775
Q ss_pred HhccccCCchhHHHHHHHHHHHHH-hhc---------------hhHHHHHHHHHHHhCCChHHHHHHH------HHHHHH
Q 039706 866 LSCTVESHPFAAICFCNRAAAYKA-LRH---------------ITDAIADCNLAIALDGNYLKAISRR------ATLYEM 923 (1166)
Q Consensus 866 Lel~~e~~p~~a~a~~nlA~ay~~-lGq---------------~eeAi~~lekALeldP~~~~A~~~L------A~ay~~ 923 (1166)
=++ .-|..+...|..|.+..+ .++ -..|++.+.+|++.+|.-++.++.+ -.-+.+
T Consensus 322 dDi---~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilk 398 (539)
T PF04184_consen 322 DDI---SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILK 398 (539)
T ss_pred ccc---cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcC
Confidence 222 235556655555554332 121 1346788888888888877665543 122344
Q ss_pred hhCHHHHHHHHHHHH
Q 039706 924 IRDYDHAASDFHRLI 938 (1166)
Q Consensus 924 lGdyeeAi~~yekAL 938 (1166)
.|| .||+.+---.+
T Consensus 399 rGD-SEAiaYAf~hL 412 (539)
T PF04184_consen 399 RGD-SEAIAYAFFHL 412 (539)
T ss_pred CCc-HHHHHHHHHHH
Confidence 454 66666544433
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00043 Score=55.92 Aligned_cols=43 Identities=23% Similarity=0.050 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANC 651 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~l 651 (1166)
.+++.+|.+|..+|++++|+..|+++|+.+|++..+|..+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4678899999999999999999999999999999999988863
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0023 Score=66.95 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhccCC
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRK-----------YEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGd-----------yeeAi~~lekALel~p~n 765 (1166)
+++|+.-|++||.++|+..++++.+|.+|..++. |++|..+|++++..+|.+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5678889999999999999999999999988764 788999999999999876
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.045 Score=66.59 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc---chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG---TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~---~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
.|-..|.+|....++++|+++|++. ....+++.|.. ....+..-..-|.-+...|+++.|+.+|-+|-.+
T Consensus 663 lydkagdlfeki~d~dkale~fkkg------daf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~- 735 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKG------DAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL- 735 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcc------cHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH-
Confidence 3445677778888899999999873 11222332211 1111222223377788889999999888766321
Q ss_pred ccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 870 VESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 870 ~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
..--.+....++|.+|+..++..-... .-...|-.++.-|...|+|+-|.+.|.+
T Consensus 736 -----------~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 736 -----------IKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred -----------HHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHh
Confidence 111223344556666666655433221 1122233445555666666666655544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.037 Score=62.22 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
.-+..+...+..|++.+|...|..++...|++..+...+|.||+..|+.+.|...+... |....+.... .
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~-----~- 205 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAH-----G- 205 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHH-----H-
Confidence 34556888999999999999999999999999999999999999999999999887653 3211110000 0
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
+ ...+..+......++. ..+++.+..+|++..+.+.+|..|...|++++|++.+-..+..+...
T Consensus 206 -----l---~a~i~ll~qaa~~~~~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 206 -----L---QAQIELLEQAAATPEI----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred -----H---HHHHHHHHHHhcCCCH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 0 0001111111123333 33556777899999999999999999999999999998888776543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.014 Score=69.45 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=43.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~ 672 (1166)
...+..+.++-++...+||+++|+.+.||..||.-.. .-..+|..+|+++++..
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAG 230 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHH
Confidence 3345678899999999999999999999998876433 34788999999988753
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.11 Score=63.46 Aligned_cols=125 Identities=18% Similarity=0.051 Sum_probs=95.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHH
Q 039706 804 LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNR 883 (1166)
Q Consensus 804 lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nl 883 (1166)
....+.|.+.++.....- +..+..+...|..+...|+.++|++.|++++.....-......+++.+
T Consensus 246 ~~~~~~a~~lL~~~~~~y--------------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El 311 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--------------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFEL 311 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHH
Confidence 345677777777753333 334556677899999999999999999999865444445677899999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHhhCH-------HHHHHHHHHHHHHhh
Q 039706 884 AAAYKALRHITDAIADCNLAIALDGNY-LKAISRRATLYEMIRDY-------DHAASDFHRLIALLT 942 (1166)
Q Consensus 884 A~ay~~lGq~eeAi~~lekALeldP~~-~~A~~~LA~ay~~lGdy-------eeAi~~yekALeL~P 942 (1166)
|.++..+.+|++|..++.+.++.+.-. +-..+..|.||..+++. ++|...|+++-.+..
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876543 33445678999999999 666666666655543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00067 Score=51.30 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPD 640 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~ 640 (1166)
.+|+++|.+|+.+|++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777788888888888888888777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00073 Score=54.57 Aligned_cols=42 Identities=26% Similarity=0.180 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
.+|..+|.+|..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999999988875
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00046 Score=52.80 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 039706 630 DCMLAVAIDPDFLRVQVRAANCHLALGEIEDASK 663 (1166)
Q Consensus 630 ~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~ 663 (1166)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999963
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0095 Score=60.53 Aligned_cols=106 Identities=18% Similarity=0.062 Sum_probs=80.4
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccC-----Cc-------------hhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVES-----HP-------------FAAICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~-----~p-------------~~a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
+...|......++...++..+.+++.+.... .. ....++..++..+...|++++|+..+.++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3334666677888999999999999876210 01 11334456777788999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 904 IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 904 LeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
+.++|.+-.+|..+-.+|..+|++.+|+..|+++.....+....
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999887776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00096 Score=50.42 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~ 909 (1166)
.+|+++|.+|..+|++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0007 Score=51.81 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=28.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHH
Q 039706 899 DCNLAIALDGNYLKAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 899 ~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi 931 (1166)
+|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378888999999999999999999999988886
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.01 Score=57.87 Aligned_cols=102 Identities=18% Similarity=0.294 Sum_probs=79.5
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccc--------cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-------
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTV--------ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL------- 906 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~--------e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel------- 906 (1166)
.+..|.-.+..|-|++|...|++|+++.. +..-.++.|+..|+.++..+|+|++++...+++|..
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 33446667788999999999999998763 223356889999999999999999999988888854
Q ss_pred CCC----hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 907 DGN----YLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 907 dP~----~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+.+ .+.+.+.+|.++..+|+.++|+..|+.+-++..+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 333 3556788999999999999999999999987443
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0013 Score=81.82 Aligned_cols=52 Identities=35% Similarity=0.481 Sum_probs=44.6
Q ss_pred cchhhhcccCCC----CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhC
Q 039706 984 LDMYLILGVESS----VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLS 1058 (1166)
Q Consensus 984 ~dyY~iLGl~~~----as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLs 1058 (1166)
.+.|++|.++.+ -..+.|+++|+|+|.||||||++ +-.++|..+++||+.|.
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP-----------------------EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP-----------------------EGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc-----------------------hHHHHHHHHHHHHHHHH
Confidence 478999988743 33588999999999999999986 56689999999999998
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.3 Score=55.77 Aligned_cols=288 Identities=13% Similarity=0.104 Sum_probs=170.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAI--DPDF--------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALel--dP~~--------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
..++.......++++++..|.+++.. -|.. ..+...++.+|...|++++-....+..-..
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf---------- 77 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPF---------- 77 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH----------
Confidence 45778888888999999999999884 1222 346788999999999998877666553321
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccCHHHHHHHH
Q 039706 682 AVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRKYEEVIQLC 755 (1166)
Q Consensus 682 l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGdyeeAi~~l 755 (1166)
...+.+...+ .....+..... ...+....-+..+...++..-.. ..+-..++.+|+..++|.+|+...
T Consensus 78 ----~~~v~Kakaa-KlvR~Lvd~~~-~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~ 151 (411)
T KOG1463|consen 78 ----LSSVSKAKAA-KLVRSLVDMFL-KIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALI 151 (411)
T ss_pred ----HHHhhhHHHH-HHHHHHHHHHc-cCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1111111111 11111111111 01222334444444444432211 123356788999999999999988
Q ss_pred HHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccc
Q 039706 756 EQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGT 835 (1166)
Q Consensus 756 ekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~ 835 (1166)
...+.--..... .... +....+=..+|+.+.+..+|...+..|.-... .++-.
T Consensus 152 ~~L~rElKKlDD-------------K~lL------vev~llESK~y~~l~Nl~KakasLTsART~An--------aiYcp 204 (411)
T KOG1463|consen 152 NDLLRELKKLDD-------------KILL------VEVHLLESKAYHALRNLPKAKASLTSARTTAN--------AIYCP 204 (411)
T ss_pred HHHHHHHHhccc-------------ccce------eeehhhhhHHHHHHhcchhHHHHHHHHHHhhc--------ccccC
Confidence 887754332211 1110 01123356788999999999888877532111 11111
Q ss_pred h-HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhH--HHHHHHHHHHhCCCh
Q 039706 836 V-RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITD--AIADCNLAIALDGNY 910 (1166)
Q Consensus 836 ~-~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~ee--Ai~~lekALeldP~~ 910 (1166)
+ -++..-+.-|..+....+|.-|..+|-+|++-.. ..+..-...+-.+-.|-..++..++ ++-.-..+++.+...
T Consensus 205 PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~ 284 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRD 284 (411)
T ss_pred HHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcc
Confidence 1 1222223347777777999999999999987431 1112233344444455556666655 555556778888888
Q ss_pred HHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHhh
Q 039706 911 LKAISRRATLYE--MIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 911 ~~A~~~LA~ay~--~lGdyeeAi~~yekALeL~P 942 (1166)
.+|+...|.++. .+.+|+.|+..|..=+.-+|
T Consensus 285 i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 285 IDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 999999999986 45678888888777665443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0033 Score=74.12 Aligned_cols=107 Identities=26% Similarity=0.278 Sum_probs=94.5
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh---chhHHHHHHHHHHHhCCChHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR---HITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG---q~eeAi~~lekALeldP~~~~ 912 (1166)
+..++..+..|+-.+-...+..||.+|.+++... |....+|.++|.++++.+ +.-.|+.+|..|++++|...+
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~----~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k 446 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYV----PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK 446 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhc----cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence 4456666777888888889999999999999887 889999999999998764 566799999999999999999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
||+.|+.++..++++.+|+.+...+....|.+..
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 9999999999999999999999988888886654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.032 Score=60.80 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=63.9
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
.+.+...+++..|+|-+++++....|... |.+..+|+.+|.++...=+..+|.+++.++|+++|.-..+..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~----~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH----PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 35567889999999999999999999988 999999999999999999999999999999999997665543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0027 Score=47.62 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDF 641 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~ 641 (1166)
+|+.+|.+|+.+|+|++|+.+|+++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666777777777777777777777777653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.2 Score=56.91 Aligned_cols=165 Identities=15% Similarity=0.020 Sum_probs=126.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhhh
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS-GSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel-~P~n~~a~~~l~Ea~~~L~k 691 (1166)
-.+..+...|++.+|-...++.|+-.|++.-++..--.+++.+|+...-...+++++-. +++-+-.
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~------------- 174 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY------------- 174 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH-------------
Confidence 34677888999999999999999999999999999999999999999999999998876 5552110
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
.+.....++.....|-|.+|.+..++++++++.+.-+...++.++...+++.++.+...+.-....
T Consensus 175 ------sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-------- 240 (491)
T KOG2610|consen 175 ------SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-------- 240 (491)
T ss_pred ------HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh--------
Confidence 111122222334579999999999999999999999999999999999999999998776532221
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
++.....+ .|...+..|...+.|+.|++.|.+-
T Consensus 241 -------~s~mlasH------NyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 241 -------QSWMLASH------NYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred -------hhhHHHhh------hhHHHHHhhhcccchhHHHHHHHHH
Confidence 11111111 1334667788889999999999873
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.35 Score=61.50 Aligned_cols=61 Identities=23% Similarity=0.223 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 606 CEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 606 ~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
.++..|..+|.+.+..|...+||+.|-+| +++..|...-.+..+.|.|++-+.++..|.+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 34556777888888888888888777654 44556777777777778888877777776654
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.051 Score=65.18 Aligned_cols=97 Identities=19% Similarity=0.122 Sum_probs=84.8
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchh-HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFA-AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~-a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
.....|+-..|+.++..|+... |.. .....++|.++.+-+...+|-..+.++|.+....+-.++.+|.+|+.+.+
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~----p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLA----PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccC----hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 3446688899999999999776 332 34567899999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHhh
Q 039706 927 YDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 927 yeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+.|++.|++|+.+.|++++..
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECE 713 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhH
Confidence 9999999999999999987643
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.42 Score=60.61 Aligned_cols=252 Identities=14% Similarity=0.031 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHH
Q 039706 642 LRVQVRAANCHLALGEIEDASKYFRMCLQSGSD--VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALG 719 (1166)
Q Consensus 642 ~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~--n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe 719 (1166)
+...+..|..+....++++|...+.++...-+. .......+.+ ..+.........++++.|++
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae---------------~~aL~a~val~~~~~e~a~~ 479 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAE---------------FQALRAQVALNRGDPEEAED 479 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHH---------------HHHHHHHHHHhcCCHHHHHH
Confidence 445566678888888999998888877653222 1111111111 11111122234899999999
Q ss_pred HHHHHHHhCCCh-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHH
Q 039706 720 VIDEALFISSYS-----EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRC 794 (1166)
Q Consensus 720 ~lekALel~P~~-----~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~ 794 (1166)
+.+.++..-|.. ..++...+.+..-.|++++|..+..++.+...... ..++..|..
T Consensus 480 lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-------------------~~~l~~~~~ 540 (894)
T COG2909 480 LARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD-------------------VYHLALWSL 540 (894)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-------------------cHHHHHHHH
Confidence 999999887654 35677889999999999999999999988865432 235667777
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 795 CLIFKSYFTLGRL--EEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 795 ~lLA~ay~~lGd~--eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
+..+.++..+|+. ++....+.... ...+...+.........+.++...-+++.+.......+++-...
T Consensus 541 ~~~s~il~~qGq~~~a~~~~~~~~~~----------~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~ 610 (894)
T COG2909 541 LQQSEILEAQGQVARAEQEKAFNLIR----------EQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY 610 (894)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc
Confidence 8888999999933 23333332210 01111111111111222333333333677766666666543221
Q ss_pred Cc---hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--CC---hH--HHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 873 HP---FAAICFCNRAAAYKALRHITDAIADCNLAIALD--GN---YL--KAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 873 ~p---~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--P~---~~--~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
.+ ....+++.+|.++...|++++|...+.....+- +. +. .++.-........|++++|...+.+.
T Consensus 611 ~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 611 TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 12 223344689999999999999999999887663 21 11 12222233345679999998888773
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0033 Score=47.17 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCC
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~ 909 (1166)
+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.13 Score=58.34 Aligned_cols=159 Identities=12% Similarity=-0.061 Sum_probs=115.5
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-ccCCCCCccccCcccccCccchhhhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF-AEKNSPPLDANGQSMELDSSESTKHVS 788 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel-~p~n~~a~~~~g~~l~ld~~~~~~~~~ 788 (1166)
..|++.+|...++++|.-.|.+.-++..--.+++.+|+...-...+++++.. +++.+- ..|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~------------------~sY 176 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC------------------YSY 176 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH------------------HHH
Confidence 4788889999999999999999888888888999999999988888887754 222211 111
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhc
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel 868 (1166)
. .-.++..+...|-|++|.+...++++. +..+.++...++.++...+++.++.+...+--..
T Consensus 177 v----~GmyaFgL~E~g~y~dAEk~A~ralqi--------------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~ 238 (491)
T KOG2610|consen 177 V----HGMYAFGLEECGIYDDAEKQADRALQI--------------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD 238 (491)
T ss_pred H----HHHHHhhHHHhccchhHHHHHHhhccC--------------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc
Confidence 1 234666778889999999999887443 3345677777788889999999999887765332
Q ss_pred cccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 039706 869 TVESHPFAAICFCNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 869 ~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
-....-....-|..-|.+|..-+.|+.|++.|++-+
T Consensus 239 Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 239 WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 111111223345567888888899999999998765
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.041 Score=58.46 Aligned_cols=105 Identities=11% Similarity=0.085 Sum_probs=82.4
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh-HHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY-LKAIS 915 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~-~~A~~ 915 (1166)
.-....+.++..++..+++++|+..++.++.... .....+.+-.++|.+..++|++++|+..++..-. +.. +..-.
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~e 163 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-DENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAE 163 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHH
Confidence 3355667789999999999999999999996531 1234456677899999999999999999886542 222 23355
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.+|.++...|+-++|+..|+++++..+..
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 68999999999999999999999876443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.4 Score=55.72 Aligned_cols=318 Identities=13% Similarity=0.004 Sum_probs=174.9
Q ss_pred hCcchhHHHHHHHHHhchH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHc
Q 039706 590 QEPNLASAETIAAQEACEK--------WRLSNRAATRMALGRMRDALSDCMLAVAIDPD----FLRVQVRA--ANCHLAL 655 (1166)
Q Consensus 590 ~ep~~A~a~~~aAIe~~e~--------~ay~nrA~ayl~lG~y~eAI~~fekALeldP~----~~~A~~~L--A~lyl~l 655 (1166)
.+.+.|..++..|+..|.. .+.+.++.+|.+.+... |+..++++|+.--+ .+...+++ ...++..
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~ 152 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH 152 (608)
T ss_pred CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence 3455677788888877753 22355688888888777 99999999986544 22222333 3333344
Q ss_pred CChHHHHHHHHHHHHcCC--CchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC----
Q 039706 656 GEIEDASKYFRMCLQSGS--DVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS---- 729 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P--~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P---- 729 (1166)
+++..|++.++.+..+.. .++. ...+..+..++.....+..+++++.+++++....
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~------------------~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPA------------------VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHH------------------HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 799999999998887542 2111 1111111222222335666677777776643221
Q ss_pred ------ChHHHHHHH--HHHHHHccCHHHHHHHHH---HHHHhccCCC--CCccccCccc-cc------C---ccchh--
Q 039706 730 ------YSEKLLEMK--AEALFMLRKYEEVIQLCE---QTFHFAEKNS--PPLDANGQSM-EL------D---SSEST-- 784 (1166)
Q Consensus 730 ------~~~~al~~l--A~~y~~lGdyeeAi~~le---kALel~p~n~--~a~~~~g~~l-~l------d---~~~~~-- 784 (1166)
....++..+ -.+++..|+++.+...++ +.+....+.. ..|...+.+. .. + +....
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl 294 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWL 294 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeec
Confidence 123334333 335566777766655544 4444333322 0111111110 00 0 00000
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC-------c---hhhhhhhhc--cchHHHHHHhhhhHHHHHc
Q 039706 785 KHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGG-------K---MLESLIPLA--GTVRELLCRKSAGNEAFQA 852 (1166)
Q Consensus 785 ~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~-------k---~le~a~~L~--~~~~~a~~l~~lG~~~~~~ 852 (1166)
......+..|..-|..++..+..++|.+++++++..-.. . .+..+.... ...-....+..++...+-.
T Consensus 295 ~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~ 374 (608)
T PF10345_consen 295 PKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIR 374 (608)
T ss_pred CHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHC
Confidence 000111233444566777778777888888886541110 0 000000000 0011233445568888999
Q ss_pred CChHHHHHHHHHHHhccccC-----CchhHHHHHHHHHHHHHhhchhHHHHHHH--------HHHHhCCC---hHHHHHH
Q 039706 853 GRHSEAVEHYTAALSCTVES-----HPFAAICFCNRAAAYKALRHITDAIADCN--------LAIALDGN---YLKAISR 916 (1166)
Q Consensus 853 G~yeEAie~y~kALel~~e~-----~p~~a~a~~nlA~ay~~lGq~eeAi~~le--------kALeldP~---~~~A~~~ 916 (1166)
++|..|......+....... ....+.+++..|..+...|+.+.|+..|. .+....+. ..-+.++
T Consensus 375 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LN 454 (608)
T PF10345_consen 375 GDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALN 454 (608)
T ss_pred cCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHH
Confidence 99999999998887654211 23457788999999999999999999998 33333333 2345566
Q ss_pred HHHHHHHhhC
Q 039706 917 RATLYEMIRD 926 (1166)
Q Consensus 917 LA~ay~~lGd 926 (1166)
+..++...+.
T Consensus 455 l~~I~~~~~~ 464 (608)
T PF10345_consen 455 LAIILQYESS 464 (608)
T ss_pred HHHHhHhhcc
Confidence 7777775554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.8 Score=50.19 Aligned_cols=137 Identities=13% Similarity=-0.011 Sum_probs=93.7
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHH
Q 039706 729 SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLE 808 (1166)
Q Consensus 729 P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~e 808 (1166)
......+...+.+..+.|.++.|...+.++....+..... .+. .....++++...|+..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----------~~~-----------v~~e~akllw~~g~~~ 201 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----------LPR-----------VFLEYAKLLWAQGEQE 201 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----------Ccc-----------hHHHHHHHHHHcCCHH
Confidence 3556788999999999999999999999988765433210 000 1234678889999999
Q ss_pred HHHHHHHHHhcCCCCch--------hhhh------------hhhccchHHHHHHhhhhHHHHHc------CChHHHHHHH
Q 039706 809 EAIAALERHESGNGGKM--------LESL------------IPLAGTVRELLCRKSAGNEAFQA------GRHSEAVEHY 862 (1166)
Q Consensus 809 eAl~~lekAl~~~~~k~--------le~a------------~~L~~~~~~a~~l~~lG~~~~~~------G~yeEAie~y 862 (1166)
+|+..++..+....... +... .........+..+..+|...... +.+++++..|
T Consensus 202 ~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~ 281 (352)
T PF02259_consen 202 EAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYY 281 (352)
T ss_pred HHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 99999988655111110 0000 01111223355666677777777 8999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHh
Q 039706 863 TAALSCTVESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA~ay~~l 890 (1166)
.+|+.++ |....+|+..|..+..+
T Consensus 282 ~~a~~~~----~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 282 KEATKLD----PSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHhC----hhHHHHHHHHHHHHHHH
Confidence 9999988 77778888888776544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.11 Score=63.39 Aligned_cols=124 Identities=18% Similarity=0.036 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
....+.|...++..++..|+..-.++..|+++...|+.++|++.+++++......
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~------------------------- 300 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW------------------------- 300 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-------------------------
Confidence 4566777777777777778777777777777777777777777777766321100
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
++. ....+..+|..+.-..+|++|..+|.+.++.+
T Consensus 301 -------------------------------------------~Ql-~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s- 335 (468)
T PF10300_consen 301 -------------------------------------------KQL-HHLCYFELAWCHMFQHDWEEAAEYFLRLLKES- 335 (468)
T ss_pred -------------------------------------------HhH-HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-
Confidence 000 12234556788888888888888888888754
Q ss_pred cCCchhHHHHHHHHHHHHHhhch-------hHHHHHHHHHHHh
Q 039706 871 ESHPFAAICFCNRAAAYKALRHI-------TDAIADCNLAIAL 906 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~-------eeAi~~lekALel 906 (1166)
.-..+...|..|.|+..+++. ++|.+.+.++-.+
T Consensus 336 --~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 336 --KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred --ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 234566677788889999988 6777777666544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.14 Score=60.19 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=63.5
Q ss_pred HHhhcCCCHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 706 LQNKTSNDAEIALGVIDEALFI----SSYSEKLLEMKAEALFM---LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 706 l~~~~~gd~eeALe~lekALel----~P~~~~al~~lA~~y~~---lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
+.++...+|+.-+.+++.+-.+ -+....+...+|.++.+ .|+.++|+..+..++.......+
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~----------- 217 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP----------- 217 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh-----------
Confidence 3355677888888888776655 35567888999999999 99999999999997654332211
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHH---------cCCHHHHHHHHHHHhcCCC
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFT---------LGRLEEAIAALERHESGNG 822 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~---------lGd~eeAl~~lekAl~~~~ 822 (1166)
..+.++|.+|-. ...+++|+..|.++....+
T Consensus 218 -------------d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 218 -------------DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred -------------HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 013455665532 2247788888888755443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.46 E-value=3.4 Score=50.18 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=70.7
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHH-HHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 844 SAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAA-AYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 844 ~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~-ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
..-+...+..-...|...|.+|-+.. .....+|..-|. -|...++..-|...|+..|...++.+..-+....-+.
T Consensus 371 ~~mn~irR~eGlkaaR~iF~kaR~~~----r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 371 QYMNFIRRAEGLKAARKIFKKAREDK----RTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhcc----CCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 33455556667788888888886543 111233332232 3668899999999999999999999888888888889
Q ss_pred HhhCHHHHHHHHHHHHHH
Q 039706 923 MIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 923 ~lGdyeeAi~~yekALeL 940 (1166)
.+++-..|...|++++..
T Consensus 447 ~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTS 464 (656)
T ss_pred HhCcchhHHHHHHHHHhc
Confidence 999999999999999976
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.09 Score=53.35 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH---HHHH-HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHH
Q 039706 644 VQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ---KIAV-EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALG 719 (1166)
Q Consensus 644 A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~---~~l~-Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe 719 (1166)
.+...|......++.+.++..+++++.+........ ..+. .....+.. ....+...+... ....|++++|+.
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~--~~~~~~~~l~~~--~~~~~~~~~a~~ 83 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRE--LYLDALERLAEA--LLEAGDYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHH--HHHHHHHHHHHH--HHHTT-HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHH--HHHHHHHHHHHH--HHhccCHHHHHH
Confidence 344556666777888888888888888754321110 0010 11111111 011122222222 235899999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 720 VIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 720 ~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
.+++++.++|.+..++..+..+|..+|++.+|+..|+++...
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988655
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.73 Score=52.45 Aligned_cols=135 Identities=17% Similarity=0.061 Sum_probs=91.0
Q ss_pred HHcCChHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcC----CCchhHHHHHHHH
Q 039706 619 MALGRMRDALSDCMLAVAID----PDF----LRVQVRAANCHLALG-EIEDASKYFRMCLQSG----SDVCVDQKIAVEA 685 (1166)
Q Consensus 619 l~lG~y~eAI~~fekALeld----P~~----~~A~~~LA~lyl~lG-d~eeAl~~fekALel~----P~n~~a~~~l~Ea 685 (1166)
...|+++.|..++.++-.+. |+. ...++..|..++..+ +++.|..++++++++- +..... ....+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~-~~~~e- 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS-PDGSE- 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccC-CcHHH-
Confidence 46789999999999886544 433 456788888888999 9999999999999862 110000 00000
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~ 762 (1166)
.+..-+...+..++.......+++|+.+++.+-...|+.+.++.+.-.++...++.+++.+.+.+++...
T Consensus 82 -------lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 82 -------LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred -------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 0111111222222322233456678888888878889988888888888888999999999999988653
|
It is also involved in sporulation []. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0036 Score=70.99 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=75.6
Q ss_pred hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhh
Q 039706 708 NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHV 787 (1166)
Q Consensus 708 ~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~ 787 (1166)
....|.++.||+++..+|.++|....+|..++.++++++++..||..|..++.++|+....
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~------------------- 184 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKG------------------- 184 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccc-------------------
Confidence 3458999999999999999999999999999999999999999999999999999876543
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 788 SFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 788 ~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
|...+.+...+|++++|...++.+
T Consensus 185 ------ykfrg~A~rllg~~e~aa~dl~~a 208 (377)
T KOG1308|consen 185 ------YKFRGYAERLLGNWEEAAHDLALA 208 (377)
T ss_pred ------cchhhHHHHHhhchHHHHHHHHHH
Confidence 233677888899999999999886
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.057 Score=61.53 Aligned_cols=131 Identities=12% Similarity=0.006 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH-cCChHHHHHHHHHHHhccccCCc
Q 039706 796 LIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ-AGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 796 lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~-~G~yeEAie~y~kALel~~e~~p 874 (1166)
.+.....+.+..+.|..+|.+|+..... ....|...|.+.+. .++.+.|...|+.+++.. +
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~--------------~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f----~ 67 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRC--------------TYHVYVAYALMEYYCNKDPKRARKIFERGLKKF----P 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS---------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCC--------------CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC----C
Confidence 3446666677799999999998532221 12234444666566 566666999999999987 7
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL---KAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~---~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.+..+|......+..+++.+.|...|++++..-|... ..|......-...|+.+.....++++.++.|+.
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 7888888888889999999999999999998876655 567777777778899999999999999988874
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.1 Score=55.11 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=28.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 633 LAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 633 kALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
+-++-+| +++.|..+|...+..-.++-|...|-++-.
T Consensus 684 qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 684 QFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred HHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 3345455 678999999999888888999888877643
|
|
| >KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.012 Score=71.03 Aligned_cols=61 Identities=33% Similarity=0.451 Sum_probs=50.0
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhC
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLS 1058 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLs 1058 (1166)
.-++-+.|..-.+..+||++|||+.|.+||||..+. ......+..|++.|-.+.+||+...
T Consensus 389 s~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~-------------gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 389 SGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQK-------------GASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred cCcccCchhhccCHHHHHHHHHhhhheeCcccccCC-------------cccHHHHHHHHHHHHHHHHHHHhhh
Confidence 335556677778899999999999999999999753 1356778999999999999997654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.13 E-value=3.6 Score=49.96 Aligned_cols=61 Identities=18% Similarity=0.099 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
.+|+.+-.-+-.. -++++...|++.+..-|..+.+|.......+...+|+.-...|.+||.
T Consensus 21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 21 DSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555444333 777777777777777777777777777777777777777777777765
|
|
| >KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.013 Score=62.26 Aligned_cols=55 Identities=27% Similarity=0.524 Sum_probs=46.6
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH-HhC
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYA-VLS 1058 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~-vLs 1058 (1166)
-..||.+|||...++..+++.+|.++|.++|||-... +....+|.+|.+||. ||+
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~---------------------~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE---------------------EADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc---------------------cccHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999998541 123357999999994 887
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.53 Score=59.94 Aligned_cols=215 Identities=13% Similarity=0.081 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHH-
Q 039706 640 DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIAL- 718 (1166)
Q Consensus 640 ~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeAL- 718 (1166)
+.+.+|.++|.+.++.|...+|++.|-+|= +|. ......++.....+++.+..++..+..-.. ....+.++
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikad--Dps---~y~eVi~~a~~~~~~edLv~yL~MaRkk~~---E~~id~eLi 1173 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPS---NYLEVIDVASRTGKYEDLVKYLLMARKKVR---EPYIDSELI 1173 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcH---HHHHHHHHHHhcCcHHHHHHHHHHHHHhhc---CccchHHHH
Confidence 446789999999999999999999998752 343 222222333333333333333322221111 11111111
Q ss_pred ---HHHHHHHH-----hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 719 ---GVIDEALF-----ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 719 ---e~lekALe-----l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
....+.-+ ..|+.+. ....|.-++..+.|+.|.-+|..
T Consensus 1174 ~AyAkt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------------------------------- 1219 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------------------------------- 1219 (1666)
T ss_pred HHHHHhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHHH---------------------------------
Confidence 00111110 1222222 22344555555555555544432
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCc-hhhhhh-----hhc-----cchHHHHHHhhhhHHHHHcCChHHHH
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGK-MLESLI-----PLA-----GTVRELLCRKSAGNEAFQAGRHSEAV 859 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k-~le~a~-----~L~-----~~~~~a~~l~~lG~~~~~~G~yeEAi 859 (1166)
+..+..++..+.++|+|..|....++|-....=+ ..-.|+ .+. ...-.++.+-.+.+.|...|-|++-|
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHH
Confidence 2224568888999999999999888863211000 000000 000 01112334445566777888888888
Q ss_pred HHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHH
Q 039706 860 EHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCN 901 (1166)
Q Consensus 860 e~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~le 901 (1166)
.+++.+|.+. ......+..+|.+|.+- ++++-.+.++
T Consensus 1300 sl~Ea~LGLE----RAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1300 SLLEAGLGLE----RAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred HHHHhhhchh----HHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 8888888766 55556666777666543 3444444443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.65 Score=58.07 Aligned_cols=235 Identities=11% Similarity=0.000 Sum_probs=144.9
Q ss_pred hchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCch
Q 039706 605 ACEKWRLSNRAATRMALG-----RMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG---EIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG-----~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG---d~eeAl~~fekALel~P~n~ 676 (1166)
...+.+.+.+|.+|+... ++..|+..|.++..+ .++.+.+.+|.+|..-. ++..|.++|..|.+..-.
T Consensus 285 ~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-- 360 (552)
T KOG1550|consen 285 KGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-- 360 (552)
T ss_pred hcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh--
Confidence 334556788999999853 788899999998876 46678999999998766 578999999998765422
Q ss_pred hHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc-cCHHHHHH
Q 039706 677 VDQKIAVEASDGLQKAQKVSECMQRSAQLLQ--NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML-RKYEEVIQ 753 (1166)
Q Consensus 677 ~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~--~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l-GdyeeAi~ 753 (1166)
..+..+..++. .....+...|..++.++.+.. .+.+.+.++.++..- +++..+..
T Consensus 361 --------------------~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~ 418 (552)
T KOG1550|consen 361 --------------------LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALA 418 (552)
T ss_pred --------------------HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHH
Confidence 11112222222 123568899999999999887 334444444444333 77777777
Q ss_pred HHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 754 LCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT----LGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 754 ~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~----lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
.+....++.-..... ... + +......+.. ..+.+.+...+.++..
T Consensus 419 ~~~~~a~~g~~~~q~---------------~a~-----~-l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---------- 467 (552)
T KOG1550|consen 419 LYLYLAELGYEVAQS---------------NAA-----Y-LLDQSEEDLFSRGVISTLERAFSLYSRAAA---------- 467 (552)
T ss_pred HHHHHHHhhhhHHhh---------------HHH-----H-HHHhccccccccccccchhHHHHHHHHHHh----------
Confidence 666555443222111 000 0 0000000111 1244555555555311
Q ss_pred hhhccchHHHHHHhhhhHHHHHc----CChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH---hhchhHHHHHHHH
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQA----GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA---LRHITDAIADCNL 902 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~----G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~---lGq~eeAi~~lek 902 (1166)
.....+...+|..|+.- .+++.|...|..|... . +...+++|.++.. ..++..|..++.+
T Consensus 468 ------~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~-----~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 468 ------QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ-----G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred ------ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh-----h--hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 11233344456666543 4699999999999753 2 7888899988863 1227889999999
Q ss_pred HHHhCCC
Q 039706 903 AIALDGN 909 (1166)
Q Consensus 903 ALeldP~ 909 (1166)
+.+.+..
T Consensus 535 ~~~~~~~ 541 (552)
T KOG1550|consen 535 ASEEDSR 541 (552)
T ss_pred HHhcCch
Confidence 9887654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.42 Score=51.00 Aligned_cols=117 Identities=10% Similarity=0.102 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCChH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhH
Q 039706 716 IALGVIDEALFISSYSE---KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLW 792 (1166)
Q Consensus 716 eALe~lekALel~P~~~---~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~w 792 (1166)
+.+..+++....++... ...+.+|..+...+++++|+..++.++....+. .+...
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De----------------------~lk~l 127 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE----------------------NLKAL 127 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH----------------------HHHHH
Confidence 33444444444443332 334567777778888888888887777442211 11122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
.-.+|+.+.+.+|.+++|+..+.... ...-........|.++...|+-.+|+..|++|+...
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~---------------~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIK---------------EESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccc---------------cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 23457777888888888887776521 111112222335777777777777777777777654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.68 Score=54.60 Aligned_cols=127 Identities=11% Similarity=-0.066 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHc-CCCchhH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAI----DPDFLRVQVRAANCHLA---LGEIEDASKYFRMCLQS-GSDVCVD 678 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALel----dP~~~~A~~~LA~lyl~---lGd~eeAl~~fekALel-~P~n~~a 678 (1166)
.+....++=.+|....+|+.=+...+..-.+ -++.....+.+|-++-+ .|+.++|+..+..++.. .+.++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3344577788899999999888888876665 34567788899999999 99999999999996654 3333333
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC
Q 039706 679 QKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK 747 (1166)
Q Consensus 679 ~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd 747 (1166)
..++..++..+-. .. ........++|+..|.++.++.|+ ...-.++|.++...|.
T Consensus 220 ~gL~GRIyKD~~~---------~s----~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFL---------ES----NFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHH---------Hc----CccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 3333333322200 00 000122366777777777777743 2333445555555554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.68 Score=51.36 Aligned_cols=230 Identities=13% Similarity=0.141 Sum_probs=126.8
Q ss_pred cCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH
Q 039706 621 LGRMRDALSDCMLAVAIDPDF----LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS 696 (1166)
Q Consensus 621 lG~y~eAI~~fekALeldP~~----~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~ 696 (1166)
....++|+..|++++++.+.- .+|+-++..+++++++|++-+..|.+.|..-.. . +...+ ..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS-A--------VTrNy-----SE 105 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS-A--------VTRNY-----SE 105 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-H--------Hhccc-----cH
Confidence 458899999999999999865 468899999999999999999999988752110 0 00000 00
Q ss_pred HHHHHHHHHHHhh-----cCCCHHHHHHHHHHHHHhCCChHHHH----HHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 697 ECMQRSAQLLQNK-----TSNDAEIALGVIDEALFISSYSEKLL----EMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 697 e~~~~a~~~l~~~-----~~gd~eeALe~lekALel~P~~~~al----~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.++..+..+.... -+.-|+..+..+..| .+..+| ..++.+|+..++|.+-...+.++-........
T Consensus 106 KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA-----KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 106 KSINSILDYISTSKNMDLLQEFYETTLDALKDA-----KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh-----hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1111111111100 011233334433333 223333 46899999999999888887776655443321
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHH-hhhh
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCR-KSAG 846 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l-~~lG 846 (1166)
....+--...+..|.+--..|-.+.+-..-..+|++++.... +++ .+.-.-.. ---|
T Consensus 181 -------------edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKS------AIP---HPlImGvIRECGG 238 (440)
T KOG1464|consen 181 -------------EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKS------AIP---HPLIMGVIRECGG 238 (440)
T ss_pred -------------chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhc------cCC---chHHHhHHHHcCC
Confidence 111110011112223333456666666666677777654221 111 11111111 1126
Q ss_pred HHHHHcCChHHHHHHHHHHHhcc-ccCCchhHHHH--HHHHHHHHHhh
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCT-VESHPFAAICF--CNRAAAYKALR 891 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~-~e~~p~~a~a~--~nlA~ay~~lG 891 (1166)
..+++.|+|++|-..|=+|++-. ....|....|+ .-+|..+++.|
T Consensus 239 KMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 239 KMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred ccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 77889999999999888888643 23345555554 34444444433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.022 Score=42.76 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
.+|+.+|.+|..+|++++|+..|++++++.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3556666666666666666666666666655
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.7 Score=52.32 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN--YLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~--~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
|.+..+-+.+|..|...|++++|++.+-..+..+-. +..+...+-.++...|.-+.+...|+
T Consensus 233 Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 233 PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 555555666666666666666666666555555432 23444444455555553333333333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.018 Score=43.22 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~ 909 (1166)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888888888888888888888888888874
|
... |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.9 Score=48.35 Aligned_cols=284 Identities=11% Similarity=0.083 Sum_probs=156.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh----CC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAI----DP----DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALel----dP----~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
.+|.-....+++++|+..|.++|.. +. ....+...++.+|...|++..-.+......+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~------------- 74 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREA------------- 74 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH-------------
Confidence 3566777889999999999999865 21 22357789999999999987655554432221
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
...+.+... ...+..+...+ .+....++.-+..++..++..-.. ..+-..++.+|++.|+|.+|+......
T Consensus 75 -m~~ftk~k~-~KiirtLiekf-~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 75 -MEDFTKPKI-TKIIRTLIEKF-PYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred -HHHhcchhH-HHHHHHHHHhc-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 111111110 01111111111 122455666666666666544221 133356788899999999999988877
Q ss_pred HHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHH
Q 039706 759 FHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRE 838 (1166)
Q Consensus 759 Lel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~ 838 (1166)
+.--.....- +..+ ..+.+-..+|+...+..++...+..|.-.... ...+..-.
T Consensus 152 l~ElKk~DDK-----------~~Li--------~vhllESKvyh~irnv~KskaSLTaArt~Ans-------~YCPpqlq 205 (421)
T COG5159 152 LHELKKYDDK-----------INLI--------TVHLLESKVYHEIRNVSKSKASLTAARTLANS-------AYCPPQLQ 205 (421)
T ss_pred HHHHHhhcCc-----------ccee--------ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhc-------cCCCHHHH
Confidence 7543322110 0001 11233567788888888777777654211100 01111112
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC--CchhHHHHHHHHHHHHHhhchhH--HHHHHHHHHH-hCCChHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES--HPFAAICFCNRAAAYKALRHITD--AIADCNLAIA-LDGNYLKA 913 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~--~p~~a~a~~nlA~ay~~lGq~ee--Ai~~lekALe-ldP~~~~A 913 (1166)
+..-+.-|.......+|.-|..+|-+|++--... +......+-.+-.....+++.++ |+-.-..+++ .+...+++
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~a 285 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRA 285 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHH
Confidence 2222334777788889999999999998743211 11111111112222223344333 3322333444 45566778
Q ss_pred HHHHHHHHH--HhhCHHHHHHHHHHHH
Q 039706 914 ISRRATLYE--MIRDYDHAASDFHRLI 938 (1166)
Q Consensus 914 ~~~LA~ay~--~lGdyeeAi~~yekAL 938 (1166)
+...+.+|. .+.+|..|+..|..-+
T Consensus 286 m~avaea~~NRsL~df~~aL~qY~~el 312 (421)
T COG5159 286 MLAVAEAFGNRSLKDFSDALAQYSDEL 312 (421)
T ss_pred HHHHHHHhCCCcHhhHHHHHHHhhHHh
Confidence 888888875 4567777777776654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.22 Score=56.80 Aligned_cols=133 Identities=14% Similarity=-0.050 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA-LGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~-lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
|........+.+..+.|...|.+|++..+-...+|...|.+-+. .++.+.|...|+.+++..|.+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~------------ 71 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD------------ 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH------------
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH------------
Confidence 44455566666679999999999996666678999999999777 56666699999999998777432
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE---KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~---~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
++..+...+. ..++.+.|..+|++++..-|... .+|......-...|+.+....+.+++.++.|..
T Consensus 72 --------~~~~Y~~~l~--~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 72 --------FWLEYLDFLI--KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp --------HHHHHHHHHH--HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred --------HHHHHHHHHH--HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 2222223332 36889999999999998876554 677788888888999999999999999987763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.51 E-value=7.7 Score=46.37 Aligned_cols=52 Identities=8% Similarity=-0.060 Sum_probs=47.4
Q ss_pred HHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 884 AAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 884 A~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
|.-++..|+|.++.-+..-..+++| .+.++..+|.+++...+|++|..++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3446789999999999999999999 899999999999999999999998865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.3 Score=53.69 Aligned_cols=106 Identities=10% Similarity=-0.063 Sum_probs=63.3
Q ss_pred HHHHHHHcCChHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 614 RAATRMALGRMRD--ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 614 rA~ayl~lG~y~e--AI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
.-..+...++++. ..+.+.....+.|..+--.+..|.++...|+.+.|+..++.++. +. +.+
T Consensus 237 ~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~--------------~kQ 300 (546)
T KOG3783|consen 237 FISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IR--------------MKQ 300 (546)
T ss_pred HHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HH--------------HHH
Confidence 3344444444433 33334444557899988888999999999998888888888765 21 111
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKA 739 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA 739 (1166)
... .-.+..+.... -+.+|.+|-..+..+...+..+.-.|..++
T Consensus 301 ~~~-l~~fE~aw~~v---~~~~~~~aad~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 301 VKS-LMVFERAWLSV---GQHQYSRAADSFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHH-HHHHHHHHHHH---HHHHHHHHhhHHHHHHhhhhhhHHHHHHHH
Confidence 111 11222222222 245677777777777777766666665555
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.57 Score=55.40 Aligned_cols=177 Identities=13% Similarity=0.008 Sum_probs=113.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHH
Q 039706 723 EALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYF 802 (1166)
Q Consensus 723 kALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~ 802 (1166)
..|..+|...+.+..++.++..+|+++.|.+.+++||-..... +.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~-----------------------------------~~ 75 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA-----------------------------------FH 75 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------------------------------HH
Confidence 3567899999999999999999999999999999998442210 00
Q ss_pred HcCCHHHHHHHHHHHh-cCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHH
Q 039706 803 TLGRLEEAIAALERHE-SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFC 881 (1166)
Q Consensus 803 ~lGd~eeAl~~lekAl-~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~ 881 (1166)
..|.... ...... ...-.....+.....++......+.+.|-|..|+++.+-.+.+++..+|.-..+
T Consensus 76 ---------~~F~~~~~~~~~g~-~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll-- 143 (360)
T PF04910_consen 76 ---------PSFSPFRSNLTSGN-CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL-- 143 (360)
T ss_pred ---------HHhhhhhcccccCc-cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH--
Confidence 0000000 000000 000000011112223334446677899999999999999999996655544333
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHhCC-C----hHHHHHHHHHHHHHhhCH---------------HHHHHHHHHHHHHh
Q 039706 882 NRAAAYKALRHITDAIADCNLAIALDG-N----YLKAISRRATLYEMIRDY---------------DHAASDFHRLIALL 941 (1166)
Q Consensus 882 nlA~ay~~lGq~eeAi~~lekALeldP-~----~~~A~~~LA~ay~~lGdy---------------eeAi~~yekALeL~ 941 (1166)
.+-....+.++|+--+..++....... + .+..-+.+|.++..+++- +.|...+++|+..+
T Consensus 144 ~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 144 FIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 334444566777777777776554211 1 234567788888888888 89999999999999
Q ss_pred hhhHH
Q 039706 942 TKQIE 946 (1166)
Q Consensus 942 P~~~e 946 (1166)
|.-..
T Consensus 224 P~vl~ 228 (360)
T PF04910_consen 224 PWVLV 228 (360)
T ss_pred HHHHH
Confidence 98755
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.15 E-value=4.8 Score=48.03 Aligned_cols=200 Identities=14% Similarity=0.142 Sum_probs=112.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC
Q 039706 652 HLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK-VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY 730 (1166)
Q Consensus 652 yl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~-~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~ 730 (1166)
..+.++...|.+++.-...++|......+.+.. ...+++.-- -...+.+...+ +..++.+-..+-+
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls-~~~lq~Iv~~DD~~~Tklr~y------------L~lwe~~qs~DiD 374 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKILDPRISVSEKLLLS-PKVLQDIVCEDDESYTKLRDY------------LNLWEEIQSYDID 374 (549)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcC-HHHHHHHHhcchHHHHHHHHH------------HHHHHHHHhhccc
Confidence 357789999999999888899987654443211 111111100 01112222222 2223332222222
Q ss_pred ---hHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCC
Q 039706 731 ---SEKLLEMKAEALFMLRK-YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGR 806 (1166)
Q Consensus 731 ---~~~al~~lA~~y~~lGd-yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd 806 (1166)
-...+..-|.-|.+.|. -++|++.++.+++..+.+... .... . .+-...
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec---------------~n~v-------~-----~fvKq~ 427 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIEC---------------ENIV-------F-----LFVKQA 427 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHH---------------HHHH-------H-----HHHHHH
Confidence 23455667788888887 788999999888876643211 0000 0 011111
Q ss_pred HHHHHH-----HH---HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH
Q 039706 807 LEEAIA-----AL---ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 807 ~eeAl~-----~l---ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
|.+|+. .+ +..+...+ ..++.....++.....-|.-++..|+|.++.-+-.=..+++ | .+.
T Consensus 428 Y~qaLs~~~~~rLlkLe~fi~e~g------l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia----P-S~~ 496 (549)
T PF07079_consen 428 YKQALSMHAIPRLLKLEDFITEVG------LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA----P-SPQ 496 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcC------CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----C-cHH
Confidence 222221 11 11111000 01111122233334445677889999999988777777777 6 889
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHH
Q 039706 879 CFCNRAAAYKALRHITDAIADCNL 902 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lek 902 (1166)
+|..+|.|++..++|++|..++..
T Consensus 497 ~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 497 AYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHh
Confidence 999999999999999999999874
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.11 Score=58.72 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
...+.|+-.+|.+.++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|+.+|+..++..|++...
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34566778889999999999999999999999999999999999999999999999999999999988664
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.9 Score=44.79 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=64.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 739 AEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 739 A~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
|.-.+.-|-|++|...|++++......+.. ....+.-+....+..|+.++..+|+|++++....++
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~e-------------EaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a- 81 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAE-------------EAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA- 81 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TT-------------S---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH-
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChH-------------hhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH-
Confidence 444556688999999999999887665432 111122223333455777888888888887776654
Q ss_pred cCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHH
Q 039706 819 SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIA 898 (1166)
Q Consensus 819 ~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~ 898 (1166)
+.+|++-=+++.+....-..+.+++|.++..+|+.++|+.
T Consensus 82 ----------------------------------------L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~ 121 (144)
T PF12968_consen 82 ----------------------------------------LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALK 121 (144)
T ss_dssp ----------------------------------------HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ----------------------------------------HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHH
Confidence 2222222222211111122344567777788888888888
Q ss_pred HHHHHHHh
Q 039706 899 DCNLAIAL 906 (1166)
Q Consensus 899 ~lekALel 906 (1166)
.|+.+-++
T Consensus 122 ~fr~agEM 129 (144)
T PF12968_consen 122 EFRMAGEM 129 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.1 Score=55.05 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=27.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
.++.+.|+|.. +...++.-.+..+ -...|.+-..-|++++|.+.|-.+
T Consensus 713 ~AFVrc~dY~G-ik~vkrl~~i~s~----~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 713 HAFVRCGDYAG-IKLVKRLRTIHSK----EQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred hhhhhhccccc-hhHHHHhhhhhhH----HHHhHhHhhhhcchhHhhhhhhcc
Confidence 45666677653 4444444333322 234566666678888888877543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.83 E-value=8.6 Score=43.75 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHh----CC------CC----HHHHHHHHHHHHHcCChHHHHH
Q 039706 609 WRLSNRAATRMALG-RMRDALSDCMLAVAI----DP------DF----LRVQVRAANCHLALGEIEDASK 663 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG-~y~eAI~~fekALel----dP------~~----~~A~~~LA~lyl~lGd~eeAl~ 663 (1166)
..+|+.|...+..+ +++.|+..+++|+++ .+ +. ..++..++.+|+..+.++...+
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 34799999999999 999999999999887 22 11 4567888999998887654433
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.053 Score=41.86 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+|..+|.+|..+|+|++|+.+|+++|.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4667777777777777777777776655433
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.55 Score=54.93 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=81.2
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc-------CCc--hh-----HHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE-------SHP--FA-----AICFCNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e-------~~p--~~-----a~a~~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
++..+.-|..++++++|..|+--|..||++-.. ..+ .+ ..+--.+..||+++++.+.|+....+.|
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 344455577888899999999989888886520 111 11 2233468899999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 905 ALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 905 eldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.++|.+..-++..|.++..+.+|.+|...+--|.-+
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887766644
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.71 E-value=2.8 Score=47.60 Aligned_cols=182 Identities=13% Similarity=-0.036 Sum_probs=119.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML----RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTK 785 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l----GdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~ 785 (1166)
...++..|+..+..+-.. ........++.+|..- .++.+|+..|+.+.... ++.
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~~~------------------ 110 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--LAE------------------ 110 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--cHH------------------
Confidence 357788888888877652 2235667777777664 46788888888554331 111
Q ss_pred hhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc-----C--C
Q 039706 786 HVSFRLWRCCLIFKSYFT----LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA-----G--R 854 (1166)
Q Consensus 786 ~~~~~~wr~~lLA~ay~~----lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~-----G--~ 854 (1166)
..+.||..|.. ..++.+|..+|+++........ ....+.+|..|..- - +
T Consensus 111 -------a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------------~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 111 -------ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------------ALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred -------HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------------HHHHHHHHHHHHcChhhhcccHH
Confidence 13457777766 4489999999999744322210 22233344444332 1 3
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh-----
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR----- 925 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG----- 925 (1166)
...|+..|.+|-... +..+.+++|.+|.. ..++.+|+.+|.+|.+... ..+.+.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 171 DKKALYLYRKAAELG------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred HHhHHHHHHHHHHhc------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchh
Confidence 347999999987643 66788888888764 3478999999999999876 88888888 666555
Q ss_pred ----------CHHHHHHHHHHHHHHhh
Q 039706 926 ----------DYDHAASDFHRLIALLT 942 (1166)
Q Consensus 926 ----------dyeeAi~~yekALeL~P 942 (1166)
+...|..++..+....+
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 66777777777665433
|
|
| >KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.061 Score=51.28 Aligned_cols=53 Identities=38% Similarity=0.530 Sum_probs=44.2
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.--.||||.+..+.+.||+++|+.-+..|||+-+.. -.-..|+||+++|....
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP------------------------YlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP------------------------YLASKINEAKDLLEGTS 109 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH------------------------HHHHHHHHHHHHHhccc
Confidence 345689999999999999999999999999997642 34568999999997543
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.049 Score=62.42 Aligned_cols=105 Identities=24% Similarity=0.256 Sum_probs=88.8
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccc-----------c----CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTV-----------E----SHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~-----------e----~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
..+.|+..++.++|..|..-|.+++..-. + .......++.+++.+-+.++.+..|+..+..+++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 34558889999999999999998876421 0 11223456778999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 907 DGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 907 dP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
++...+++++++..|..+.++++|+++++.+....|.+..
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 9999999999999999999999999999999998888755
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.12 Score=43.89 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAAN 650 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~ 650 (1166)
.+|.+|..++++|+|.+|..+++.+|+++|++..+......
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45667778888888888888888888888887776654443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.046 Score=40.47 Aligned_cols=31 Identities=39% Similarity=0.511 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+++.+|.+|..+|++++|+..|+++++.+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666655554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.46 E-value=3.8 Score=57.19 Aligned_cols=87 Identities=14% Similarity=0.061 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHh---ccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHH
Q 039706 855 HSEAVEHYTAALS---CTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 855 yeEAie~y~kALe---l~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi 931 (1166)
..+-|-.+++++- .++......+.+|...|.+....|+++.|-.++-.|.+.. -+.++..+|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 4455555555542 2234456778999999999999999999999999998877 5789999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 039706 932 SDFHRLIALLTK 943 (1166)
Q Consensus 932 ~~yekALeL~P~ 943 (1166)
..+++.++++-.
T Consensus 1723 ~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1723 SVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHhhcc
Confidence 999999966433
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.35 E-value=8.3 Score=43.21 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=103.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG-EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG-d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
++....+-..|+..-..+|.++|.+..+|..+-.|+..++ +..+-+.++..+++-+|.|...+..-
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR------------- 118 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR------------- 118 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH-------------
Confidence 3455667788999999999999999988877777776654 67888899999999888864433221
Q ss_pred HHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 696 SECMQRSAQLLQNKTSNDAE-IALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~e-eALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
..++. ..|++. .-++....+|..+..+..+|..+-.++...+.|+.-+.++.+.|+.+-.|..+|.
T Consensus 119 -------r~ive--~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 119 -------RVIVE--LLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred -------HHHHH--HhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 11111 134555 6688888999999999999999999999999999999999999998877766654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.16 Score=43.01 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
.+++.+|..+.++|+|.+|..+++.+|+++|++..+......+-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 46788899999999999999999999999999888776554443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.22 Score=54.49 Aligned_cols=92 Identities=23% Similarity=0.182 Sum_probs=69.5
Q ss_pred HHHcCChHHHHHHHHHHHhccc---cCCchhHHHHHHHHHHHHHhhchh-------HHHHHHHHHHHhCC------ChHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTV---ESHPFAAICFCNRAAAYKALRHIT-------DAIADCNLAIALDG------NYLK 912 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~---e~~p~~a~a~~nlA~ay~~lGq~e-------eAi~~lekALeldP------~~~~ 912 (1166)
+.....+++|++.|.-||-... ......+.++..+|++|..+++.+ .|+..|.+|++... +...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3445688899999998876442 223355788899999999888844 56666666665432 2356
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.++.+|.++.++|++++|+.+|.+++..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 7888999999999999999999999954
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.55 Score=61.81 Aligned_cols=189 Identities=16% Similarity=0.118 Sum_probs=137.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 039706 735 LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAAL 814 (1166)
Q Consensus 735 l~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~l 814 (1166)
....+......+.+.+|.+ +-+++.+..+.... -... ....|..++.++..++++++|+..-
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~----------~h~~-------~~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGV----------LHPE-------VASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhh----------cchh-------HHHHHHHHHHHHhhhcchHHHHHhc
Confidence 3455566666777777777 55555443211100 0001 1223567999999999999999988
Q ss_pred HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc----ccCCchhHHHHHHHHHHHHHh
Q 039706 815 ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT----VESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 815 ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~----~e~~p~~a~a~~nlA~ay~~l 890 (1166)
.++.-... ...-...+.....+.+++...+..++...|+..+.+++.+. .+.+|.-+....+++.++..+
T Consensus 997 ~ka~ii~e------R~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 997 RKACIISE------RVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred ccceeeec------hhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH
Confidence 87522111 11123345667778888888899999999999999998764 245788888999999999999
Q ss_pred hchhHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 891 RHITDAIADCNLAIALDG--------NYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP--------~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
++++.|+.+++.|+++.- .....+..++.++..++++..|+...+....+++.....
T Consensus 1071 ~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~ 1135 (1236)
T KOG1839|consen 1071 EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGP 1135 (1236)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCC
Confidence 999999999999998752 234567778999999999999999999999888887654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.07 Score=39.47 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPD 640 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~ 640 (1166)
+++++|.+|..+|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.18 E-value=20 Score=44.48 Aligned_cols=107 Identities=12% Similarity=-0.008 Sum_probs=86.6
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC-CChHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD-GNYLKAISR 916 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld-P~~~~A~~~ 916 (1166)
+...|.....--...|+++...-.|++++--- ......|.+.+.-....|+..-|-..+.++.++. |..+..++.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c----A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC----ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH----hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 34445555566678899999999999998644 5667889888888888899999988888888875 667777888
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 917 RATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
-+..-...|++..|...|+++.+-.|..++..
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~ 403 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVV 403 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhH
Confidence 88888899999999999999998887766543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.52 Score=44.47 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHHhhhH
Q 039706 627 ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV--CVDQKIAVEASDGLQKA 692 (1166)
Q Consensus 627 AI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n--~~a~~~l~Ea~~~L~k~ 692 (1166)
.+..++++++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ...++.+.++...+...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4678899999999999999999999999999999999999999988764 44555555555555443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.13 E-value=2 Score=49.93 Aligned_cols=52 Identities=23% Similarity=0.139 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
.+..+.+|++||+.+|.+..++..+-.+..+..+-++..+.+++++...|..
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~ 98 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGS 98 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Confidence 3456788999999999999999999999999999999999999999988764
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.1 Score=53.07 Aligned_cols=163 Identities=14% Similarity=0.055 Sum_probs=99.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCchhHHHHHH--HHHHHhhhHH--hHHHHHHHHH
Q 039706 633 LAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG-----SDVCVDQKIAV--EASDGLQKAQ--KVSECMQRSA 703 (1166)
Q Consensus 633 kALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~-----P~n~~a~~~l~--Ea~~~L~k~~--~~~e~~~~a~ 703 (1166)
..|..+|-+..++++++.++..+|+++.|.+.+++||-.- |.......... .....+.... ....++.+..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 3467899999999999999999999999999999998531 11000000000 0000000111 1111122222
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhCCC-hHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCcc
Q 039706 704 QLLQNKTSNDAEIALGVIDEALFISSY-SEK-LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSS 781 (1166)
Q Consensus 704 ~~l~~~~~gd~eeALe~lekALel~P~-~~~-al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~ 781 (1166)
.. ..+.|-+..|+++.+-++.++|. ++- +++.+=...++.++|+=-+..++........+.
T Consensus 111 ~~--L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~--------------- 173 (360)
T PF04910_consen 111 QS--LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNW--------------- 173 (360)
T ss_pred HH--HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhh---------------
Confidence 22 34689999999999999999998 664 455555556677888888888876654211110
Q ss_pred chhhhhhhhhHHHHHHHHHHHHcCCH---------------HHHHHHHHHH
Q 039706 782 ESTKHVSFRLWRCCLIFKSYFTLGRL---------------EEAIAALERH 817 (1166)
Q Consensus 782 ~~~~~~~~~~wr~~lLA~ay~~lGd~---------------eeAl~~lekA 817 (1166)
.... ....+-++.+++.+++- +.|...+++|
T Consensus 174 -~~~l----Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 174 -LSLL----PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred -hhhC----ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHH
Confidence 0000 01124577788888887 7888888876
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.34 Score=54.82 Aligned_cols=68 Identities=15% Similarity=-0.001 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
+.|+=.+|+..++++.|+.+.+.++.++|+.+.-+..+|.+|.++|.+..|+..++..++..|+.+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 57788899999999999999999999999999999999999999999999999999999999986543
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.12 Score=57.94 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=70.5
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
.+......+....+.|+.++|..+|+.|+.++ |.++.++...|.....-++.-+|-.+|-+||.+.|.+.+|+.++
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlala----P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALA----PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcC----CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 34444556677789999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred HHHH
Q 039706 918 ATLY 921 (1166)
Q Consensus 918 A~ay 921 (1166)
+...
T Consensus 191 ~RT~ 194 (472)
T KOG3824|consen 191 ARTT 194 (472)
T ss_pred hccc
Confidence 7654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.97 E-value=18 Score=43.29 Aligned_cols=187 Identities=12% Similarity=0.027 Sum_probs=109.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHH
Q 039706 721 IDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKS 800 (1166)
Q Consensus 721 lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~a 800 (1166)
+++++..-|..+++|+.....+...++-+.|+...++++...|... ..++..
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~----------------------------~~lse~ 342 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLT----------------------------MFLSEY 342 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchh----------------------------eeHHHH
Confidence 4445555566666777777777777777777777777666555311 224555
Q ss_pred HHHcCCHHHHHHHHHHHhc----------------CCCCchhhhhhhh--ccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 801 YFTLGRLEEAIAALERHES----------------GNGGKMLESLIPL--AGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 801 y~~lGd~eeAl~~lekAl~----------------~~~~k~le~a~~L--~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
|-...+-+....+|+++.+ .+.+. +...++ ....+...++.-.-+.-.+..-.+.|...|
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~--e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F 420 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNF--EYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLF 420 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCc--cccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555555555555322 00000 000000 000011111121233444555677788888
Q ss_pred HHHHhccccCCchhHHHHHHHH-HHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 863 TAALSCTVESHPFAAICFCNRA-AAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA-~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
.++-+.. -....+|..-| .-|...+++.-|-..|+..+...|+.+......-.-+..+++-..|...|+.+++..
T Consensus 421 ~k~rk~~----~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 421 IKLRKEG----IVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred HHHhccC----CCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 8886543 12222332222 236678999999999999999999887666666667788999999999999888653
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.48 Score=53.39 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=61.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
+.|.-....|+.++|...|+.|+.++|++++++..+|.....-.+.-+|-++|-+||.++|.+..+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 456677889999999999999999999999999999999999999999999999999999997654
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.92 E-value=3.8 Score=45.73 Aligned_cols=170 Identities=11% Similarity=0.013 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR-KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG-dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
...-..|+.+.+.+|.++|.+..+|..+-.++..++ +..+-++++.++++-.|+|-..
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQv--------------------- 114 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQV--------------------- 114 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhH---------------------
Confidence 345577888999999999999888888777777664 5677888999999888887543
Q ss_pred hhHHHHHHHHHHHHcCCHH-HHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhc
Q 039706 790 RLWRCCLIFKSYFTLGRLE-EAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~e-eAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel 868 (1166)
|.+ .-.+...+|+.. .-+...+.++..+.. .-.++.+. -.++..-+.|+.-+.+..+.|+.
T Consensus 115 --WHH--Rr~ive~l~d~s~rELef~~~~l~~DaK------------NYHaWshR--qW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 115 --WHH--RRVIVELLGDPSFRELEFTKLMLDDDAK------------NYHAWSHR--QWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred --HHH--HHHHHHHhcCcccchHHHHHHHHhcccc------------chhhhHHH--HHHHHHHhhHHHHHHHHHHHHHH
Confidence 322 122333444544 444555544332221 12233333 45556666788888888888887
Q ss_pred cccCCchhHHHHHHHHHHHHH------hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 039706 869 TVESHPFAAICFCNRAAAYKA------LRHITDAIADCNLAIALDGNYLKAISRRATLYEM 923 (1166)
Q Consensus 869 ~~e~~p~~a~a~~nlA~ay~~------lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~ 923 (1166)
+ ..+-.+|..+--+... .-..+.-+.+..+.|.+.|++..+|..|.-++..
T Consensus 177 D----i~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 177 D----IRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred h----hhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 6 3333444433211111 1234455677778888889988888888777664
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.11 Score=36.58 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPD 640 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~ 640 (1166)
+|+++|.+|+.++++++|+..|+++++++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3556666666666666666666666666654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.52 E-value=5 Score=49.38 Aligned_cols=79 Identities=10% Similarity=-0.014 Sum_probs=42.9
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
.+..+.+...+.-|.+.|.+.-.+. .+-..+...++|.+|....++--++- ...|+..|+-+...
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD~k------------siVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGDLK------------SLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhccHH------------HHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhh
Confidence 3444445555555666665542211 12234556677777766655432222 23556666666667
Q ss_pred hCHHHHHHHHHHHH
Q 039706 925 RDYDHAASDFHRLI 938 (1166)
Q Consensus 925 GdyeeAi~~yekAL 938 (1166)
.++++|.+.|.+|=
T Consensus 818 DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAG 831 (1081)
T ss_pred hhHHHHHHHHHHhc
Confidence 77777777666553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.8 Score=45.97 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=75.4
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC--ChHH----
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG--NYLK---- 912 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP--~~~~---- 912 (1166)
...+..+|..|.+.|++++|+++|.++.+.. .........+.++-.+....+++..+..++.+|-.+-. .+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4567778999999999999999999988754 22234456777888888999999999999999877642 2222
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIA 939 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALe 939 (1166)
.....|..++..++|.+|...|-.++.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 233456777778889888888876653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.13 Score=39.69 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVA 636 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALe 636 (1166)
|.++|.+|..+|+|++|+.+|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.29 E-value=3.4 Score=48.14 Aligned_cols=166 Identities=11% Similarity=-0.000 Sum_probs=101.1
Q ss_pred HHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 039706 582 VDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDA 661 (1166)
Q Consensus 582 ~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeA 661 (1166)
.++.+.+..+|++..+.+.-+ +..+..........-....-.+..+..|++||+.+|++...++.+-.++....+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li-~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELI-EFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHH-HHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 466777888888777665421 1111110000000111122246678899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHh-h--hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC----------
Q 039706 662 SKYFRMCLQSGSDVCVDQKIAVEASDGL-Q--KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS---------- 728 (1166)
Q Consensus 662 l~~fekALel~P~n~~a~~~l~Ea~~~L-~--k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~---------- 728 (1166)
.+-+++++..+|.+..-|..+......- . .+..+...+. +++..+.....-.
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~---------------~~l~~L~~~~~~~~~~~~~~~~~ 149 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE---------------KCLRALSRRRSGRMTSHPDLPEL 149 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH---------------HHHHHHHHhhccccccccchhhH
Confidence 9999999999998765554433322210 0 1112222222 2222222221111
Q ss_pred -CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Q 039706 729 -SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAE 763 (1166)
Q Consensus 729 -P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p 763 (1166)
.....++..+...+...|-.+.|+..++-.++++=
T Consensus 150 e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 150 EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 11235566777888889999999999999998854
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.14 Score=35.92 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCC
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP 908 (1166)
+|.++|.++..++++++|+..+.++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.11 Score=52.95 Aligned_cols=73 Identities=29% Similarity=0.488 Sum_probs=53.0
Q ss_pred ccchhhhcccC--CCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCC
Q 039706 983 PLDMYLILGVE--SSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDP 1060 (1166)
Q Consensus 983 ~~dyY~iLGl~--~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~ 1060 (1166)
+.+||.+.|.. ......-....|..-..+.|||+.....+ .....|.+.-..|++||.+|.||
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~---------------~~~d~a~eqSa~lnkAY~TLk~p 71 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFA---------------GDTDQASEQSAELNKAYDTLKDP 71 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCccccccccc---------------ccchhHHHHHHHHHHHHHHHHhH
Confidence 35789988744 34445555557788888999999653211 11246778899999999999999
Q ss_pred chhcccchhh
Q 039706 1061 SKRSRYDLEE 1070 (1166)
Q Consensus 1061 ~kR~~YD~~~ 1070 (1166)
-+|++|=..+
T Consensus 72 L~RA~Yilkl 81 (168)
T KOG3192|consen 72 LARARYLLKL 81 (168)
T ss_pred HHHHHHHHHH
Confidence 9999996543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.15 Score=55.29 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=56.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~ 676 (1166)
......++.+.|.+.|.+|+.+-|.+...|+++|....+.|+++.|.+.|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456678999999999999999999999999999999999999999999999999999853
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.79 Score=56.08 Aligned_cols=102 Identities=10% Similarity=0.038 Sum_probs=86.0
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
+.+.|.-+|+.++|..+++.|...+...+ ......+....+++.||+.+.+.+.|+++++.|-+.+|..+-..+..-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 44567888999999999999999987543 1223447788999999999999999999999999999999988888888
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 920 LYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 920 ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+....+.-++|+...........+
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhhhcc
Confidence 888899999999998887765444
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.1 Score=43.91 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=69.2
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc-----------hhHHHHHHHHHHHhCCChHHH
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH-----------ITDAIADCNLAIALDGNYLKA 913 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq-----------~eeAi~~lekALeldP~~~~A 913 (1166)
++..++..|++-+|++..+..+....+. ...+.++...|.++..+.. .-.|++.+.++..+.|..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~-~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED-ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC-CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 4677899999999999999999876322 2223566667777766543 446899999999999998777
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
++.+|.-+-....|++++.--+++|.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 777777666666666666666666543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.2 Score=54.05 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 792 WRCCLIFKSYFT-LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 792 wr~~lLA~ay~~-lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
|.+..++..|.+ .|+..+|+.++..++...+. ...-..++.+|.++++.|...+|--.+..|+.-.
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~------------h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA- 279 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSR------------HNKDIALLSLATVLHRAGFSADAAVILHAALDDA- 279 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc------------ccccchhhhHHHHHHHcccccchhheeehhccCC-
Confidence 556667777655 69999999999997543222 2223345678999999999999999999888765
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 871 ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
+....-++.++.++..++.+...+..|..+.+.+|....+.-.++.+-.-+.+..++++-..+.
T Consensus 280 ---~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~ 343 (886)
T KOG4507|consen 280 ---DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRS 343 (886)
T ss_pred ---ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556668999999999999999999999999999987666555544444344444444433333
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=11 Score=42.83 Aligned_cols=136 Identities=10% Similarity=-0.056 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCch-hHH
Q 039706 609 WRLSNRAATRMAL----GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDASKYFRMCLQSGSDVC-VDQ 679 (1166)
Q Consensus 609 ~ay~nrA~ayl~l----G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeAl~~fekALel~P~n~-~a~ 679 (1166)
.+.+.++..|..- .++.+|+..|..+ .+..++.+.+.||.+|.. ..++.+|..+|+++.+..-... ...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 4566677777654 3688899999944 456788899999999987 4599999999999998754321 000
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH----ccCHHHHHHHH
Q 039706 680 KIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM----LRKYEEVIQLC 755 (1166)
Q Consensus 680 ~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~----lGdyeeAi~~l 755 (1166)
..+... +.. .. ......-+...|+..|.++-... ++.+...+|.+|.. ..++.+|+..|
T Consensus 152 ~~l~~~-------------~~~-g~-~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy 214 (292)
T COG0790 152 YRLGLA-------------YLS-GL-QALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWY 214 (292)
T ss_pred HHHHHH-------------HHc-Ch-hhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Confidence 000000 000 00 00001123357888888887765 67788888888865 45899999999
Q ss_pred HHHHHhcc
Q 039706 756 EQTFHFAE 763 (1166)
Q Consensus 756 ekALel~p 763 (1166)
.++.+...
T Consensus 215 ~~Aa~~g~ 222 (292)
T COG0790 215 KKAAEQGD 222 (292)
T ss_pred HHHHHCCC
Confidence 99987643
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=92.22 E-value=52 Score=43.77 Aligned_cols=55 Identities=18% Similarity=0.010 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 623 RMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 623 ~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
.+.+|+..|++. .-.|.-+--|+..|.+|.++|+|++-+++|..|++..|..+.-
T Consensus 534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 577888888774 4467777889999999999999999999999999988876543
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.19 E-value=5.7 Score=45.50 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC---ccccCcccccCccchhhhhh
Q 039706 712 NDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP---LDANGQSMELDSSESTKHVS 788 (1166)
Q Consensus 712 gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a---~~~~g~~l~ld~~~~~~~~~ 788 (1166)
.+..+-|.....||+++|.++.++..+|+-- .--..+|..+++++|+........ ....+... ......+..
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~---da~~rRDtn 272 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH---EAQLRRDTN 272 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch---hhhhhcccc
Confidence 4455667777789999999999998887632 233566777777777653321110 00000000 000111112
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERHES 819 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~ 819 (1166)
...+.-..++.+..++|+..+|++.++....
T Consensus 273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 2233346789999999999999999988644
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.33 Score=60.87 Aligned_cols=108 Identities=27% Similarity=0.355 Sum_probs=96.0
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh--hchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL--RHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l--Gq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
+......|+.+++.++|.+|.-.|..++.+-|..+...+.+..+++.||+.+ ++|..++..++.|+...|....+++.
T Consensus 53 a~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~ 132 (748)
T KOG4151|consen 53 ALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLK 132 (748)
T ss_pred HHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhh
Confidence 4445567999999999999999999999998877888899999999998865 68999999999999999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 917 RATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
++.+|..++.++-|++++.-.....|.+.+
T Consensus 133 r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 133 RARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 999999999999999998877777777744
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.39 Score=57.44 Aligned_cols=78 Identities=24% Similarity=0.233 Sum_probs=64.3
Q ss_pred HHHHHHHHhchH--HHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 597 AETIAAQEACEK--WRLSNRAATRMAL---GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 597 a~~~aAIe~~e~--~ay~nrA~ayl~l---G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
..+..|+...+. ..|.|||.++++. |+.-.|+.+|..|++++|...+||++|++++..++++.+|+.+...+...
T Consensus 395 ~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 395 SHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred HHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 344455544433 4478899999885 57788999999999999999999999999999999999999998877777
Q ss_pred CCC
Q 039706 672 GSD 674 (1166)
Q Consensus 672 ~P~ 674 (1166)
.|.
T Consensus 475 ~Pt 477 (758)
T KOG1310|consen 475 FPT 477 (758)
T ss_pred Cch
Confidence 774
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.69 E-value=27 Score=43.47 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPD------FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~------~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
..+.|.|.-+++..+|..|++.|...+..-|. +++....++.||+.+.+.+.|+++++.|-+.+|.++......
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 44678899999999999999999999987664 467888999999999999999999999999999876544443
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.59 E-value=3.3 Score=54.97 Aligned_cols=173 Identities=12% Similarity=0.043 Sum_probs=117.2
Q ss_pred CCCHHHHHH------HHHHH-HHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccch
Q 039706 711 SNDAEIALG------VIDEA-LFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSES 783 (1166)
Q Consensus 711 ~gd~eeALe------~lekA-Lel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~ 783 (1166)
.+.+.+|.+ .+... -.+.|.....|..++.++..++++++|+....++.-+..... ..+....
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~----------g~ds~~t 1014 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL----------GKDSPNT 1014 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc----------cCCCHHH
Confidence 556666666 44433 234688889999999999999999999999888765543321 1222222
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHH
Q 039706 784 TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYT 863 (1166)
Q Consensus 784 ~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~ 863 (1166)
...+..++...+..++...|+..+.+++....- ......+.-+....+++.++...++++.|+.+.+
T Consensus 1015 -------~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L------s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le 1081 (1236)
T KOG1839|consen 1015 -------KLAYGNLALYEFAVKNLSGALKSLNRALKLKLL------SSGEDHPPTALSFINLELLLLGVEEADTALRYLE 1081 (1236)
T ss_pred -------HHHhhHHHHHHHhccCccchhhhHHHHHHhhcc------ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 233566788888888999999998886442211 1111234445555666777888899999999999
Q ss_pred HHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 864 AALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 864 kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
.|+++.. ...-..+.++..+|.++..++++..|+...+....+
T Consensus 1082 ~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1082 SALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9998653 122345667777777777777777777777666554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.44 E-value=9 Score=42.89 Aligned_cols=125 Identities=13% Similarity=0.001 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc----CCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHES----GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~----~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
..+|.+|+..++|.+-.+.+.+.-. .++...+. .....++.|-..-..|..+.+-..-..+|+++|.+..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k------KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKS 222 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK------KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKS 222 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh------ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhc
Confidence 4588999999988877777666322 22222221 2222234444445667777777777788999987652
Q ss_pred c-CCchh-HHHHHHHHHHHHHhhchhHHHHHHHHHHHhC-----CChHH--HHHHHHHHHHHhh
Q 039706 871 E-SHPFA-AICFCNRAAAYKALRHITDAIADCNLAIALD-----GNYLK--AISRRATLYEMIR 925 (1166)
Q Consensus 871 e-~~p~~-a~a~~nlA~ay~~lGq~eeAi~~lekALeld-----P~~~~--A~~~LA~ay~~lG 925 (1166)
. .+|.- ..+.-.=|..+++.|+|++|..+|=.|.+.. |.... -|+-+|..+++.|
T Consensus 223 AIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 223 AIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 1 12222 1222223556788899999999999988753 33322 3444566665554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.2 Score=45.05 Aligned_cols=80 Identities=10% Similarity=0.075 Sum_probs=60.7
Q ss_pred HHHhhhhHHHHHcC---ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 840 LCRKSAGNEAFQAG---RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G---~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
...+++++++.... +..+.|.+++..+.- ......-.+.|.+|..++++++|+.|+.+++..|+..|++..+...
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34455566666554 456788899999862 2334556788889999999999999999999999999999888765
Q ss_pred HHHHH
Q 039706 917 RATLY 921 (1166)
Q Consensus 917 LA~ay 921 (1166)
.-.+.
T Consensus 111 k~~ie 115 (149)
T KOG3364|consen 111 KETIE 115 (149)
T ss_pred HHHHH
Confidence 54444
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=91.35 E-value=2.3 Score=46.58 Aligned_cols=108 Identities=15% Similarity=-0.034 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCC-------hHHHHHHHHHHHhccc--cCCch
Q 039706 805 GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGR-------HSEAVEHYTAALSCTV--ESHPF 875 (1166)
Q Consensus 805 Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~-------yeEAie~y~kALel~~--e~~p~ 875 (1166)
-.+++|++.|.-|+... .+.-......+..++.+|++|...++ +..|++.|.+|++... ...-.
T Consensus 91 Rt~~~ai~~YkLAll~~-------~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCA-------QIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCHHHHHHHHHHHHHHH-------HHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 35667777776653210 00011122345556666777777776 4556667777765442 12234
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH-HHHHHHHH
Q 039706 876 AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL-KAISRRAT 919 (1166)
Q Consensus 876 ~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~-~A~~~LA~ 919 (1166)
...+++.+|.++.++|++++|+.+|.+++....... ..+..+|.
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 567888999999999999999999999997643322 34444443
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.32 E-value=33 Score=39.62 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
..-+...+..+..+-|.....||+++|..+.+|..+|.--.. -..+|...|++||+.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEAT--TIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHHH
Confidence 344445566777888999999999999999999988865433 367888888888864
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.26 E-value=17 Score=48.21 Aligned_cols=130 Identities=14% Similarity=0.065 Sum_probs=87.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---ChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLAL----G---EIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~l----G---d~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
-.+++....|+.|+..|++...--|.- .+|.+++|..++.+ | .+++|+..|++... .|..
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------- 551 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGA--------- 551 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCC---------
Confidence 456777888999999999999888865 46889999888754 2 36666666665432 2221
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc-----CHHHHHHHHHHHH
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR-----KYEEVIQLCEQTF 759 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG-----dyeeAi~~lekAL 759 (1166)
-+..++.++.+...++|++-+..|.-|++..|..+.+-..+-.+-+++. .-..|....--++
T Consensus 552 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (932)
T PRK13184 552 -------------PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLAL 618 (932)
T ss_pred -------------chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333455555667899999999999999999888755544444333332 2334555555666
Q ss_pred HhccCCCC
Q 039706 760 HFAEKNSP 767 (1166)
Q Consensus 760 el~p~n~~ 767 (1166)
...|....
T Consensus 619 ~~~~~~~~ 626 (932)
T PRK13184 619 WIAPEKIS 626 (932)
T ss_pred HhCccccc
Confidence 66666543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.10 E-value=13 Score=39.38 Aligned_cols=117 Identities=13% Similarity=0.035 Sum_probs=81.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
....+.+....|+...|+..|..+-...+.+ .+..-.+.+..+..+...|-|++-....+.. ..+.+
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt~~P----------~~~rd~ARlraa~lLvD~gsy~dV~srvepL---a~d~n 163 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADTSIP----------QIGRDLARLRAAYLLVDNGSYDDVSSRVEPL---AGDGN 163 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccCCCc----------chhhHHHHHHHHHHHhccccHHHHHHHhhhc---cCCCC
Confidence 3557788889999999999998864433322 1111122333577788889888766555443 22455
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
|....+.-.||.+-++.|++.+|...|..... +..-+....+++.+.+.+
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 77777888889999999999999999988766 666677777787776543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.75 E-value=2.7 Score=41.12 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=72.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHh
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDFLRV---QVRAANCHLALGEIEDASKYFRMCLQS-GSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~~~A---~~~LA~lyl~lGd~eeAl~~fekALel-~P~n~~a~~~l~Ea~~~L 689 (1166)
+|..++..|++-+|++..+..+...++...+ +...|.++..+ +... +|+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~-------------- 55 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDV-------------- 55 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchH--------------
Confidence 6778888888888888888888888776543 33444444332 2222 3320
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
.. --.-.|++.+.++..+.|..+..++.+|.-+-...-|++++.-++++|.+
T Consensus 56 -----------k~---------~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 56 -----------KF---------RYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -----------HH---------HHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 00 01224788999999999999999999988887788889999988888865
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=90.72 E-value=1.3 Score=41.68 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=48.7
Q ss_pred HHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 858 AVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY--LKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 858 Aie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~--~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
.+..++++++.+ |.+..+.+.+|.++...|++++|++.+-.++..++++ ..+...+-.++..+|.-+.-+..|+
T Consensus 7 ~~~al~~~~a~~----P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAAN----PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHS----TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 345666677666 7777788888888888888888888888888777665 4555666666666666554555554
Q ss_pred HHH
Q 039706 936 RLI 938 (1166)
Q Consensus 936 kAL 938 (1166)
+-+
T Consensus 83 RkL 85 (90)
T PF14561_consen 83 RKL 85 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=2.6 Score=50.12 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=89.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
..|+.-.|-..+..+|...|..+....+.+.+...+|.|+.|.+.+..+-.+-..-..+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~--------------------- 359 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST--------------------- 359 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH---------------------
Confidence 47899899999999999999999999999999999999999998876554432211100
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
...+-+.++.+|++++|+...+-.+. ..+...+...-.+.....+|-+++|.-++++.+.++
T Consensus 360 ----~~~~~r~~~~l~r~~~a~s~a~~~l~--------------~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 360 ----LRCRLRSLHGLARWREALSTAEMMLS--------------NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred ----HHHHHHhhhchhhHHHHHHHHHHHhc--------------cccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 12244667889999999988876532 222223333334555667788999999999999887
Q ss_pred c
Q 039706 870 V 870 (1166)
Q Consensus 870 ~ 870 (1166)
+
T Consensus 422 ~ 422 (831)
T PRK15180 422 P 422 (831)
T ss_pred C
Confidence 4
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.24 Score=53.92 Aligned_cols=59 Identities=20% Similarity=0.155 Sum_probs=36.1
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
...+.++.+.|.+.|.+|+.+. |..+..|+.+|....+.|+++.|.+.|++.|+++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~la----p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA----PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC----chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4445566666666666666655 5566666666666666666666666666666666554
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=90.05 E-value=13 Score=41.41 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 644 VQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 644 A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
-++.+|.++.+.++|++++.++++++..+++
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 3567888888899999999999998888765
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.84 E-value=3.2 Score=43.98 Aligned_cols=61 Identities=33% Similarity=0.466 Sum_probs=51.3
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVL 1057 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vL 1057 (1166)
.+.|.+|++.......+|+++|+++...+|||+.... ....+..+.+++.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~-------------~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAK-------------GLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHh-------------cCCHHHHHHHHHHHHHHHHHHHhc
Confidence 5889999999999999999999999999999997521 123455678999999999999743
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.81 E-value=7.5 Score=44.32 Aligned_cols=85 Identities=21% Similarity=0.119 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
+|..-+...+++++ .....++..++..+...++++.++..+++.+.++|.+-.+|..+-.+|+..|+...|+..
T Consensus 136 ~f~~WV~~~R~~l~------e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~ 209 (280)
T COG3629 136 RFDEWVLEQRRALE------ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRA 209 (280)
T ss_pred hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHH
Confidence 36666666667765 456778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 039706 934 FHRLIALLTKQ 944 (1166)
Q Consensus 934 yekALeL~P~~ 944 (1166)
|+++-++..+.
T Consensus 210 y~~l~~~~~ed 220 (280)
T COG3629 210 YRQLKKTLAEE 220 (280)
T ss_pred HHHHHHHhhhh
Confidence 99998874443
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.59 E-value=18 Score=47.23 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVA----IDPDFLRVQVRAANCHLALGEI--EDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALe----ldP~~~~A~~~LA~lyl~lGd~--eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
|..++..|...|++++|++.+..... .++.....+-..-..+..++.- +-..++-.-.+.-+|..... ++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~--If-- 582 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ--IF-- 582 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhhee--ee--
Confidence 56677777777777777777777766 3444445555544455555544 55555555555555542110 00
Q ss_pred HHHHhhhHHh-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Q 039706 685 ASDGLQKAQK-VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY-SEKLLEMKAEALF 743 (1166)
Q Consensus 685 a~~~L~k~~~-~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~-~~~al~~lA~~y~ 743 (1166)
..... ....+ .....+.+.......-++.+++.++...-. ...++..++..|.
T Consensus 583 -----t~~~~~~~~si-s~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 583 -----TSEDKQEAESI-SRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred -----eccChhhhccC-CHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 00000 00000 011222233456677788888888876644 3444444444444
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=89.17 E-value=2.5 Score=39.89 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=44.1
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCc-----hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHP-----FAAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p-----~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
...+.++|.+|++.+.+.++....... ....++.++|.++...|++++|+..+++|+.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 346789999999999888876532211 235567778888888888888888888888774
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.06 E-value=15 Score=38.94 Aligned_cols=131 Identities=11% Similarity=-0.054 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDF--LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~--~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
|.-|.-+...+..++|+..|..+-+-.-.. .-+.++.|.++.+.|+...|+.+|..+-.-.|- +..
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~----------- 129 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQI----------- 129 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cch-----------
Confidence 444556667789999999998876654433 457789999999999999999999987764432 110
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEAL-FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFH 760 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekAL-el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALe 760 (1166)
..-+.++...+.....|-|++....++.+- ..+|.-..+...+|.+-++.|++..|...|.++..
T Consensus 130 ------~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 130 ------GRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ------hhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 001111222222234677777666555432 23455667888999999999999999999998875
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.74 E-value=6.9 Score=47.64 Aligned_cols=154 Identities=18% Similarity=0.100 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYS-EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~-~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
.+++++++..+... ++-|.- .......+..+..+|-++.|++..+.--
T Consensus 274 ~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------------------------ 322 (443)
T PF04053_consen 274 RGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------------------------ 322 (443)
T ss_dssp TT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------------------------
T ss_pred cCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------------------------
Confidence 46677766665421 112222 3445666777777888888876643110
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
..-.+...+|+++.|++..++. .....|..+|..++..|+++-|.++|.++=.
T Consensus 323 ------~rFeLAl~lg~L~~A~~~a~~~-------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-- 375 (443)
T PF04053_consen 323 ------HRFELALQLGNLDIALEIAKEL-------------------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-- 375 (443)
T ss_dssp ------HHHHHHHHCT-HHHHHHHCCCC-------------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---
T ss_pred ------HHhHHHHhcCCHHHHHHHHHhc-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--
Confidence 1223456788888888766442 1344678889999999999999888888743
Q ss_pred ccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 870 VESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 870 ~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
+..+..+|...|+.+.-.+..+.|....- +...-.+++.+|+.++.+..+.++
T Consensus 376 ----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 ----------FSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ----------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 23344566667776554444444443322 122334456677777777766554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.66 E-value=14 Score=45.45 Aligned_cols=134 Identities=15% Similarity=0.056 Sum_probs=77.3
Q ss_pred CChHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCchhHHHHHHH
Q 039706 622 GRMRDALSDCMLAVAI------------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS-----GSDVCVDQKIAVE 684 (1166)
Q Consensus 622 G~y~eAI~~fekALel------------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel-----~P~n~~a~~~l~E 684 (1166)
.-|++|...|.-|+.. .|-+...++++|.+...+|+.+-|....+++|-. .|..........-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3455666666666543 4777899999999999999999999988888751 2221100000000
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH-HHccCHHHHHHHHHHH
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY-SEKLLEMKAEAL-FMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~-~~~al~~lA~~y-~~lGdyeeAi~~lekA 758 (1166)
-+... ......-++.+... .....|-|..|+++..-++.++|. ++.....+..+| ++..+|+=-|+.++..
T Consensus 332 ~y~~~-eNR~FyL~l~r~m~--~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 332 PYIYP-ENRQFYLALFRYMQ--SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cccch-hhHHHHHHHHHHHH--HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00000 00001111111111 123589999999999999999997 665544444444 3445666555555544
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=88.54 E-value=46 Score=37.65 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHHHccCHHHHHHHHH
Q 039706 730 YSEKLLEMKAEALFMLRKYEEVIQLCE 756 (1166)
Q Consensus 730 ~~~~al~~lA~~y~~lGdyeeAi~~le 756 (1166)
.++.++..+|..|++.+++.+|..++-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 467899999999999999999887763
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.15 E-value=46 Score=39.57 Aligned_cols=139 Identities=10% Similarity=-0.038 Sum_probs=92.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc--chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCc
Q 039706 799 KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG--TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHP 874 (1166)
Q Consensus 799 ~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~--~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p 874 (1166)
..++...++.+|.+.-+..+..- +..-.. +.-.+..|+.+...|-..++...-...+...+.... ....
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i-------~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e 206 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASI-------SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEE 206 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH-------HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcch
Confidence 34455688999988877642210 000000 111233445556677777886666666665555432 1223
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHH----hCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIA----LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALe----ldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
..+.+.+.+-.+|+.-+.|+.|-....++.- .+...+..++.+|.+...+.+|..|.+++-+|+...|.+
T Consensus 207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 4466677788899999999999988887651 122456678889999999999999999999999998874
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.03 E-value=92 Score=40.01 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=32.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 621 LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 621 lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
.+++..-+..+ ...|......+.++.++...|+.++|.....++-..
T Consensus 112 ~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 112 REDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred ccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 44555544422 224788888888899999999988887777766543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.84 Score=35.35 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
++.++|.+|..+|++++|+.++++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 34445555555555555555555555443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.46 E-value=47 Score=47.31 Aligned_cols=118 Identities=9% Similarity=-0.044 Sum_probs=70.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCC--CC-HHH-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDP--DF-LRV-QVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP--~~-~~A-~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+|.+-+..+.|..|+.++++- ...+ .+ ..+ +..+=.+|...++++.-.-.+.. ...+|.
T Consensus 1389 La~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s--------------- 1451 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS--------------- 1451 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc---------------
Confidence 344555566666666666663 1111 11 122 23333366666666655544432 111222
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
...+.+.....|+|..|..+|++++..+|+....+...-...+..+.+...+...+-..
T Consensus 1452 -----------l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1452 -----------LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred -----------HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 11223334457999999999999999999987777777777778888888877655443
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.28 E-value=23 Score=43.73 Aligned_cols=185 Identities=13% Similarity=0.000 Sum_probs=104.9
Q ss_pred ccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----
Q 039706 745 LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES----- 819 (1166)
Q Consensus 745 lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~----- 819 (1166)
..-|++|...|.-++...+.+.... ++ ... .+.+..+..++.++..+|+.+.|...+++++-
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~-----lL-~ss-------PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a 317 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLI-----LL-ISS-------PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRA 317 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceee-----ee-ccC-------CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 4568888888888877655443220 11 111 12233356788999999999998888888643
Q ss_pred --CCCCchhhhhh---hhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchh
Q 039706 820 --GNGGKMLESLI---PLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHIT 894 (1166)
Q Consensus 820 --~~~~k~le~a~---~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~e 894 (1166)
..-......|. ....+.....++...-..+.+.|-|..|.++.+-.+++++..+|.-.. +.+-...++..+|+
T Consensus 318 ~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l--~~ID~~ALrareYq 395 (665)
T KOG2422|consen 318 LHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGIL--YLIDIYALRAREYQ 395 (665)
T ss_pred hccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHH--HHHHHHHHHHHhHH
Confidence 11000000000 011111222333334556678999999999999999999554443322 11222223444455
Q ss_pred HHHHHHHHH-----HHhCCChHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHhhhhH
Q 039706 895 DAIADCNLA-----IALDGNYLKAISRRATLYEMIRD---YDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 895 eAi~~lekA-----LeldP~~~~A~~~LA~ay~~lGd---yeeAi~~yekALeL~P~~~ 945 (1166)
=-|..++.. |.+-|+.+.. ..+|..|..... .+.|..++.+|+.+.|..+
T Consensus 396 wiI~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl 453 (665)
T KOG2422|consen 396 WIIELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHPLVL 453 (665)
T ss_pred HHHHHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHH
Confidence 444444443 3344654422 335555655544 6789999999999999543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.02 E-value=39 Score=40.59 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
+..+.+|+-...-+...++-+.|+....+++...|. ..+.++.+|....+-++-..+|+++.+-..
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 555666766666667778888888888888877776 677888888888887777777777665433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.59 E-value=4.9 Score=41.95 Aligned_cols=86 Identities=12% Similarity=-0.150 Sum_probs=72.8
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
+..+..........++.+++...+...--+. |..+.+-..-|.++...|+|.+|+..++.+.+-.|..+.+-..++
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLR----P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLR----PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3345556677778889999988887776666 888888888999999999999999999999998999998888899
Q ss_pred HHHHHhhCHH
Q 039706 919 TLYEMIRDYD 928 (1166)
Q Consensus 919 ~ay~~lGdye 928 (1166)
.|+..++|..
T Consensus 86 ~CL~~~~D~~ 95 (160)
T PF09613_consen 86 LCLYALGDPS 95 (160)
T ss_pred HHHHHcCChH
Confidence 9999998854
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.43 E-value=1.4 Score=34.07 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
+.++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 468899999999999999999999999875
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.36 E-value=22 Score=40.27 Aligned_cols=105 Identities=13% Similarity=0.018 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc-cC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV-ES 872 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~-e~ 872 (1166)
-+.+..+|+..|.|.+|+..+...+. ....+...+.....+.....+|....+..++...++.|-.... ..
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~--------ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y 199 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLH--------ELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY 199 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH--------HHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC
Confidence 35577889999999999998877422 2223333344455556667788888888888888877754431 11
Q ss_pred Cch--hHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 873 HPF--AAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 873 ~p~--~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
.|. .+.+-..-|..+..-.+|.-|-.+|-.|++-
T Consensus 200 CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 200 CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 121 1222223355556667888888888888764
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=86.34 E-value=2.7 Score=39.69 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=50.0
Q ss_pred HHHHhhchhHHHHHHHHHHHhCC---------ChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 886 AYKALRHITDAIADCNLAIALDG---------NYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 886 ay~~lGq~eeAi~~lekALeldP---------~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
-..+.++|..|++.+.+.+.... ....+++.+|.++...|++++|+..+++|+++..+..+
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 34578999999998888886632 23567889999999999999999999999999766644
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.82 E-value=1e+02 Score=41.39 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=33.9
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
..+...+..++++-+|.+...+.+.- +..+.+ .|.+...|.+|+..+..+-
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd-----~~~av~------ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD-----PEEAVA------LLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC-----HHHHHH------HHhhHhHHHHHHHHHHhcc
Confidence 44567778888999998888887742 333333 3455567778877766554
|
|
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=85.50 E-value=68 Score=36.02 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhccc----cCCchhHHHHHHHHHHHH-HhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHH
Q 039706 855 HSEAVEHYTAALSCTV----ESHPFAAICFCNRAAAYK-ALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 855 yeEAie~y~kALel~~----e~~p~~a~a~~nlA~ay~-~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyee 929 (1166)
.+.|.+.|+.|+++.. ..+|....+..|.+..|+ -+++.++|+....+|+.-.- +.+- .+ -++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai---------~~ld-~l--~ee 211 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI---------AELD-TL--GEE 211 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------HHhh-cc--Chh
Confidence 3467778888877642 233444455566666555 45888888887777765321 1110 01 023
Q ss_pred HHHHHHHHHHHhhhhHHhhc
Q 039706 930 AASDFHRLIALLTKQIEKSN 949 (1166)
Q Consensus 930 Ai~~yekALeL~P~~~e~~~ 949 (1166)
...+-..++++..+|+..|.
T Consensus 212 ~y~dstlImqLLrDNL~lW~ 231 (244)
T smart00101 212 SYKDSTLIMQLLRDNLTLWT 231 (244)
T ss_pred hhHHHHHHHHHHHHHHHhcc
Confidence 33445556667777777663
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.46 E-value=11 Score=40.78 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=33.6
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeA 896 (1166)
+.....+|..| ...+-++|+.+|.++|++.......++.++..+|.+|.++++++.|
T Consensus 141 ~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33344444333 3556667777777777666444455666666666666666666655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.38 E-value=1.2e+02 Score=40.88 Aligned_cols=24 Identities=8% Similarity=-0.169 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHH
Q 039706 881 CNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 881 ~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
..++.-+..++++-+|-......+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 445556667777777766665554
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.34 E-value=1.9 Score=48.43 Aligned_cols=70 Identities=16% Similarity=0.076 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
....++=.+|...++++.|..+.++.+.++|.++.-+.-+|.+|..+|.+.-|+.+++..++..|+....
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 3455666778889999999999999999999999999999999999999999999999999999887653
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.15 E-value=81 Score=40.71 Aligned_cols=144 Identities=9% Similarity=-0.119 Sum_probs=69.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDP-------DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP-------~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
-+.++...+.|+.-...|.+||..-- ..+++|...-..|+..-..++-+.++...+... - +.......+
T Consensus 196 ~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~---D~~~~~~~~ 271 (881)
T KOG0128|consen 196 FGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-L---DEDTRGWDL 271 (881)
T ss_pred ccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-c---hhhhhHHHH
Confidence 34445556777777888888876321 124455555555655555566666666666543 1 111111111
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHH-------HHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIAL-------GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeAL-------e~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
....+..... .....++.|+ ..+++.+...|.-...|..+-..-...|..-.-...+++++
T Consensus 272 ~~~sk~h~~~------------~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 272 SEQSKAHVYD------------VETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred HHHHhcchHH------------HHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1111000000 0112222222 23334444444444555555566666676666666666766
Q ss_pred HhccCCCCCccccC
Q 039706 760 HFAEKNSPPLDANG 773 (1166)
Q Consensus 760 el~p~n~~a~~~~g 773 (1166)
.-.+.....|..++
T Consensus 340 ~E~~~~~~~wi~y~ 353 (881)
T KOG0128|consen 340 AEMVLDRALWIGYG 353 (881)
T ss_pred HhccccHHHHhhhh
Confidence 66555544444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.89 E-value=12 Score=45.72 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=55.4
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH
Q 039706 618 RMALGRMRDALSDCMLAVAIDPDFL-RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS 696 (1166)
Q Consensus 618 yl~lG~y~eAI~~fekALeldP~~~-~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~ 696 (1166)
.+..+++++++..... -++-|.-+ .-...++..+..+|-.+.|++..+. |+
T Consensus 271 av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~~---------------------- 322 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----PD---------------------- 322 (443)
T ss_dssp HHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------HH----------------------
T ss_pred HHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----hH----------------------
Confidence 3456777776666531 22233333 3355666777777877777764321 11
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 697 ECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 697 e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
.+...++ ..|+.+.|++... ..+++..|..+|.+.+..|+++-|..+|+++
T Consensus 323 ---~rFeLAl---~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 323 ---HRFELAL---QLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp ---HHHHHHH---HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred ---HHhHHHH---hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 1112222 2566666665332 2346778889999999999999998888775
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.86 E-value=44 Score=41.73 Aligned_cols=236 Identities=14% Similarity=0.056 Sum_probs=117.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
..|+..|.+++|....-- -+--+ -|..||.-.+..=+++-|.+.|.++..+.
T Consensus 564 ~q~Ieag~f~ea~~iacl--gVv~~---DW~~LA~~ALeAL~f~~ARkAY~rVRdl~----------------------- 615 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACL--GVTDT---DWRELAMEALEALDFETARKAYIRVRDLR----------------------- 615 (1081)
T ss_pred hhhhhccchhhhhccccc--ceecc---hHHHHHHHHHhhhhhHHHHHHHHHHhccH-----------------------
Confidence 357777888877553321 11112 25566666666667888888888764320
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcc
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQS 775 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~ 775 (1166)
++.....+-.....|.. |+ -.++|.++...|++.||..+|.+.=..+.
T Consensus 616 --~L~li~EL~~~k~rge~--------------P~----~iLlA~~~Ay~gKF~EAAklFk~~G~enR------------ 663 (1081)
T KOG1538|consen 616 --YLELISELEERKKRGET--------------PN----DLLLADVFAYQGKFHEAAKLFKRSGHENR------------ 663 (1081)
T ss_pred --HHHHHHHHHHHHhcCCC--------------ch----HHHHHHHHHhhhhHHHHHHHHHHcCchhh------------
Confidence 11111111111111221 11 13467777777888888777754311100
Q ss_pred cccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 776 MELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 776 l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
+...+.-.|.+-+++-|+..|.-++-..+.++-.. .... +..-+..+..+...|+.
T Consensus 664 ---------AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~------------WAr~---~kePkaAAEmLiSaGe~ 719 (1081)
T KOG1538|consen 664 ---------ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD------------WARN---IKEPKAAAEMLISAGEH 719 (1081)
T ss_pred ---------HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH------------Hhhh---cCCcHHHHHHhhcccch
Confidence 00011112234455666666666665555554100 0000 00112236667778888
Q ss_pred HHHHHHH------HHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHH
Q 039706 856 SEAVEHY------TAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 856 eEAie~y------~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyee 929 (1166)
.+|+... +-++++...........+..++.-+..+..+.-|-+.|.+.=. ...+-+++...++|.+
T Consensus 720 ~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~e 791 (1081)
T KOG1538|consen 720 VKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDE 791 (1081)
T ss_pred hhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchH
Confidence 8887643 2233332111133334444455555556666666666654321 2234556677888888
Q ss_pred HHHHHHHHHHHhhh
Q 039706 930 AASDFHRLIALLTK 943 (1166)
Q Consensus 930 Ai~~yekALeL~P~ 943 (1166)
|...-++.-++.|+
T Consensus 792 AFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 792 AFALAEKHPEFKDD 805 (1081)
T ss_pred hHhhhhhCcccccc
Confidence 88877665555444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.75 E-value=6.2 Score=41.96 Aligned_cols=102 Identities=17% Similarity=0.008 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..+|..|...|++++|++.|.++...... ....+..++.+-.+.+..++|..+..+..+|-.+.....
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTS-----------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 356899999999999999999997443222 123455566677888899999999999999876542211
Q ss_pred --chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 874 --PFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 874 --p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
.....+....|..++..++|..|...|-.++.-
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 122334555677788889999999888776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.68 E-value=1.5 Score=34.72 Aligned_cols=33 Identities=6% Similarity=0.187 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
++|..||.+-+..++|++|+.+|++++++..+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999999999999875443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.54 E-value=29 Score=36.38 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ 679 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~ 679 (1166)
+.....+-+..++.+++...+.-+--+.|.....-..-|.+++..|++.+|+..|+.+..-.|..+...
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k 81 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK 81 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence 456667777888999999999988899999999999999999999999999999999888777755433
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.33 E-value=19 Score=44.60 Aligned_cols=99 Identities=18% Similarity=0.056 Sum_probs=81.4
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHH-HHHHhCCChHHHHHHH------
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCN-LAIALDGNYLKAISRR------ 917 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~le-kALeldP~~~~A~~~L------ 917 (1166)
+...+...+....|+.....++..+ +..+.++.++|.+....|....|+..+. .+....|.+......+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVN----PENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQL 148 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcC----cccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHH
Confidence 5666777888888999999999988 8889999999999888887666665554 4889999988776666
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
+..+..+++..+|...++++..+.|++.+.
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 888888888999999999999999888543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.73 E-value=5.5 Score=45.38 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
.++..++..+...|+++.++..+++.+.++|.+-.+|.++-..|+..|+...|+..|++.-.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999998655
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.63 E-value=6.7 Score=39.82 Aligned_cols=72 Identities=13% Similarity=0.025 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHH
Q 039706 609 WRLSNRAATRMALG---RMRDALSDCMLAVA-IDPDF-LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQK 680 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG---~y~eAI~~fekALe-ldP~~-~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~ 680 (1166)
...+++|.++.... +.++.|.+++..++ ..|.. -+..+.||..++++++|+.|+.+...+|+..|++..+..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 33577777777654 56778999999996 55544 467789999999999999999999999999999765443
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=82.62 E-value=13 Score=44.86 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=25.3
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
+..+...|..|.+.|+...|+.+|..|+.+.
T Consensus 370 af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 370 AFHMVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3444556889999999999999999998765
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=82.40 E-value=20 Score=40.13 Aligned_cols=62 Identities=15% Similarity=-0.050 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 627 ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 627 AI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
|+.+|.+|+.+.|.+...|.++|.++...|+.-.|+-+|-+++-..--.+.++..+..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999996543334444444444333
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.28 E-value=1.1e+02 Score=35.87 Aligned_cols=105 Identities=14% Similarity=0.025 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc-cC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV-ES 872 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~-e~ 872 (1166)
-..+..+|+..++|.+|+......+ .+..++......++.+.....+|+...+..+|...++.|-.... -.
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~--------rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY 202 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLL--------RELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY 202 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc
Confidence 3567889999999999999988752 22223333333445555667889999999999999888865331 00
Q ss_pred -Cc-hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 873 -HP-FAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 873 -~p-~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
+| ..+.+=..-|..+..-.+|..|..+|-+|++-
T Consensus 203 cpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 203 CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred cCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 11 22233334466677778999999999998874
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.03 E-value=1.6e+02 Score=38.26 Aligned_cols=273 Identities=10% Similarity=-0.039 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 039706 627 ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLL 706 (1166)
Q Consensus 627 AI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l 706 (1166)
=|.-++.-+.+++.....++.|-.++...|++++-...-..+-++.|..+..|..+......+.
T Consensus 98 ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt---------------- 161 (881)
T KOG0128|consen 98 EIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMT---------------- 161 (881)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc----------------
Confidence 3455566667778788888888888888888887777777766777766555544433221111
Q ss_pred HhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccC
Q 039706 707 QNKTSNDAEIALGVIDEALFISSYSEKLLEMKAE-------ALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELD 779 (1166)
Q Consensus 707 ~~~~~gd~eeALe~lekALel~P~~~~al~~lA~-------~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld 779 (1166)
..++-..+...+++++.-. .++.+|...+. .+...++++....+|.++|....... +
T Consensus 162 ---~s~~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~------------t 225 (881)
T KOG0128|consen 162 ---QSEERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHI------------T 225 (881)
T ss_pred ---cCcchhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhh------------c
Confidence 1355566666677776433 22333333333 33445677888888888876432110 0
Q ss_pred ccchhhhhhhhhHH-HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 780 SSESTKHVSFRLWR-CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 780 ~~~~~~~~~~~~wr-~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
+ -..+|. +..+-.+|...-..++-+.++...+...-+. .........+...-.......+++.|
T Consensus 226 -----~--G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~--------~~~~~~~~~~sk~h~~~~~~~~~~~a 290 (881)
T KOG0128|consen 226 -----E--GAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDE--------DTRGWDLSEQSKAHVYDVETKKLDDA 290 (881)
T ss_pred -----c--cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchh--------hhhHHHHHHHHhcchHHHHhccHHHH
Confidence 0 012232 2334455666666667777776654322110 00000000000000111222333444
Q ss_pred HHHHHHHHhccc---cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH-HhhCHHHHHHHH
Q 039706 859 VEHYTAALSCTV---ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE-MIRDYDHAASDF 934 (1166)
Q Consensus 859 ie~y~kALel~~---e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~-~lGdyeeAi~~y 934 (1166)
+..+.+.+.... ...+.....|..+-.-....|....-...+++++.-.+.....|...+..+- .++-.+.+...+
T Consensus 291 ~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~ 370 (881)
T KOG0128|consen 291 LKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVH 370 (881)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccccccccccccccc
Confidence 333322221110 0002233334334444455566666666777777766666666666554432 333334444555
Q ss_pred HHHHHHhhhhHH
Q 039706 935 HRLIALLTKQIE 946 (1166)
Q Consensus 935 ekALeL~P~~~e 946 (1166)
-+++...|-..+
T Consensus 371 ~ra~R~cp~tgd 382 (881)
T KOG0128|consen 371 PRAVRSCPWTGD 382 (881)
T ss_pred chhhcCCchHHH
Confidence 555555444433
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.81 E-value=2.2 Score=49.39 Aligned_cols=127 Identities=16% Similarity=0.078 Sum_probs=88.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCC---Cchhhhh-hhh-ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNG---GKMLESL-IPL-AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~---~k~le~a-~~L-~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e 871 (1166)
.+.-.+..++++.|+.-|.+++..-. ....... -.+ ...........+++...++.+.+..|+..-..++..+
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~-- 305 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDE-- 305 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccC--
Confidence 34456778888888888887654111 0000000 000 0111123344557788889999999999888888866
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
+....+++.++..+..+.++++|++++..+....|++......+..+-....++
T Consensus 306 --~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 306 --RSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred --hhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 778889999999999999999999999999999999887776666555554443
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=81.23 E-value=3.8 Score=48.29 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
--.+..||+.+++.+.|+....+.|.++|.+..-+++.|.|+..+.+|.+|...+.-+.-
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999887766543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.18 E-value=1.6e+02 Score=36.95 Aligned_cols=119 Identities=13% Similarity=-0.054 Sum_probs=90.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchh
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
....-...|+++...-.|++++-... .-.+.|...+......|+..-|-..+..+.++. .+..
T Consensus 303 yLdf~i~~g~~~~~~~l~ercli~cA--------------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~---~k~~ 365 (577)
T KOG1258|consen 303 YLDFEITLGDFSRVFILFERCLIPCA--------------LYDEFWIKYARWMESSGDVSLANNVLARACKIH---VKKT 365 (577)
T ss_pred HhhhhhhcccHHHHHHHHHHHHhHHh--------------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc---CCCC
Confidence 34455678999999999999732111 123334444555566689999988888888775 2445
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHH
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAAS 932 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~ 932 (1166)
+.+...-|..-...|++..|...++++..--|+...+-...+.....+|..+.+..
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 55666667777788999999999999998889999999999999999999998886
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.02 E-value=9.5 Score=35.17 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=44.8
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
....|.-++...+.++|+..++++|+.... .+....++-.+..+|...|+|.+++++.-+=+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466677888888888888888876633 3445556666777788888888887776555443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.39 E-value=7.2 Score=44.02 Aligned_cols=67 Identities=13% Similarity=-0.030 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
-++=.+|+..++++.|+.+.++.+.++|..+.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 4556788999999999999999999999999999999999999999999999999999999986543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.28 E-value=52 Score=43.25 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=36.0
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 618 RMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 618 yl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
++++.++..-++..+..|...+ -|..|+.+|...|++++|++.+.....-
T Consensus 484 llrlen~~c~vee~e~~L~k~~----~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 484 LLRLENNHCDVEEIETVLKKSK----KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred hhhccCCCcchHHHHHHHHhcc----cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3344444445556666665544 4778899999999999999999998763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1166 | ||||
| 2dmx_A | 92 | Solution Structure Of The J Domain Of Dnaj Homolog | 2e-10 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 3e-09 | ||
| 1hdj_A | 77 | Human Hsp40 (Hdj-1), Nmr Length = 77 | 5e-08 | ||
| 2o37_A | 92 | J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S | 2e-07 | ||
| 2y4t_A | 450 | Crystal Structure Of The Human Co-Chaperone P58(Ipk | 2e-07 | ||
| 2ctp_A | 78 | Solution Structure Of J-Domain From Human Dnaj Subf | 4e-07 | ||
| 2lgw_A | 99 | Solution Structure Of The J Domain Of Hsj1a Length | 4e-07 | ||
| 2ej7_A | 82 | Solution Structure Of The Dnaj Domain Of The Human | 7e-07 | ||
| 1bqz_A | 77 | J-Domain (Residues 1-77) Of The Escherichia Coli N- | 9e-07 | ||
| 4gco_A | 126 | Central Domain Of Stress-Induced Protein-1 (Sti-1) | 1e-06 | ||
| 2y4u_A | 450 | Crystal Structure Of Human P58(Ipk) In Space Group | 2e-06 | ||
| 1bq0_A | 103 | J-Domain (Residues 1-77) Of The Escherichia Coli N- | 2e-06 | ||
| 1xbl_A | 107 | Nmr Structure Of The J-Domain (Residues 2-76) In Th | 2e-06 | ||
| 3upv_A | 126 | Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = | 2e-06 | ||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 3e-06 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 3e-06 | ||
| 3lz8_A | 329 | Structure Of A Putative Chaperone Dnaj From Klebsie | 6e-06 | ||
| 2ctw_A | 109 | Solution Structure Of J-Domain From Mouse Dnaj Subf | 8e-06 | ||
| 2cug_A | 88 | Solution Structure Of The J Domain Of The Pseudo Dn | 8e-06 | ||
| 2dba_A | 148 | The Solution Structure Of The Tetratrico Peptide Re | 1e-05 | ||
| 2ctr_A | 88 | Solution Structure Of J-Domain From Human Dnaj Subf | 2e-05 | ||
| 2och_A | 73 | J-domain Of Dnj-12 From Caenorhabditis Elegans Leng | 2e-05 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 3e-05 | ||
| 3q47_B | 137 | Crystal Structure Of Tpr Domain Of Chip Complexed W | 3e-05 | ||
| 2dn9_A | 79 | Solution Structure Of J-Domain From The Dnaj Homolo | 3e-05 | ||
| 3sz7_A | 164 | Crystal Structure Of The Sgt2 Tpr Domain From Asper | 3e-05 | ||
| 2kqx_A | 73 | Nmr Structure Of The J-Domain (Residues 2-72) In Th | 1e-04 | ||
| 2lo1_A | 71 | Nmr Structure Of The Protein Bc008182, A Dnaj-Like | 2e-04 | ||
| 1p5q_A | 336 | Crystal Structure Of Fkbp52 C-Terminal Domain Lengt | 4e-04 | ||
| 1wao_1 | 477 | Pp5 Structure Length = 477 | 5e-04 | ||
| 1a17_A | 166 | Tetratricopeptide Repeats Of Protein Phosphatase 5 | 6e-04 | ||
| 1wjz_A | 94 | Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P | 7e-04 | ||
| 2l6l_A | 155 | Solution Structure Of Human J-Protein Co-Chaperone, | 8e-04 |
| >pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77 | Back alignment and structure |
|
| >pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92 | Back alignment and structure |
|
| >pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 | Back alignment and structure |
|
| >pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78 | Back alignment and structure |
|
| >pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99 | Back alignment and structure |
|
| >pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82 | Back alignment and structure |
|
| >pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77 | Back alignment and structure |
|
| >pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126 | Back alignment and structure |
|
| >pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 | Back alignment and structure |
|
| >pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103 | Back alignment and structure |
|
| >pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107 | Back alignment and structure |
|
| >pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126 | Back alignment and structure |
|
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329 | Back alignment and structure |
|
| >pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109 | Back alignment and structure |
|
| >pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88 | Back alignment and structure |
|
| >pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148 | Back alignment and structure |
|
| >pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88 | Back alignment and structure |
|
| >pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137 | Back alignment and structure |
|
| >pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79 | Back alignment and structure |
|
| >pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164 | Back alignment and structure |
|
| >pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73 | Back alignment and structure |
|
| >pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71 | Back alignment and structure |
|
| >pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336 | Back alignment and structure |
|
| >pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477 | Back alignment and structure |
|
| >pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166 | Back alignment and structure |
|
| >pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94 | Back alignment and structure |
|
| >pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 273 bits (701), Expect = 9e-82
Identities = 89/486 (18%), Positives = 169/486 (34%), Gaps = 96/486 (19%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVR 647
+ +P+ A RA +A+G+ + AL D + + DF +++
Sbjct: 53 VDGDPDNYIA-------------YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99
Query: 648 AANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQ 707
+ L G++++A F+ L+S + EA L K+ ++ ++
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPS----ENEEKEAQSQLIKSDEMQRLRSQALNAFG 155
Query: 708 NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767
+ D A+ +D+ L + + +L E++AE + + I + N+
Sbjct: 156 SG---DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLE 827
I Y+ LG E +++ + + L+
Sbjct: 213 AF-------------------------YKISTLYYQLGDHELSLSEVR--------ECLK 239
Query: 828 S------LIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFC 881
V++L + E + GR+++A Y + + +
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299
Query: 882 NRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941
+ +AI C+ + ++ + + A+ RA Y + YD A D+
Sbjct: 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY------- 352
Query: 942 TKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADI 1001
+ + + +Q R L + ++ D Y ILGV+ + +I
Sbjct: 353 -------------ETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399
Query: 1002 KRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061
+ YRK AL+ HPD E K AEK F IA A VLSDP
Sbjct: 400 IKAYRKLALQWHPDNFQ-----------------NEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 1062 KRSRYD 1067
R ++D
Sbjct: 443 MRKKFD 448
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 3e-20
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 29/167 (17%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860
T +++A +E+H G + AG+ ++A+
Sbjct: 13 LGTENLYFQSMADVEKH-------------------------LELGKKLLAAGQLADALS 47
Query: 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920
+ AA+ + P I + RA + A+ A+ D I L ++ A +R L
Sbjct: 48 QFHAAV----DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103
Query: 921 YEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQA 967
D A DF +++ + E+ +S + QA
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 150
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G + + +++ L A + DA++ + A+
Sbjct: 10 GVDLGTENLYFQSMADVEKHL---------------ELGKKLLAAGQLADALSQFHAAVD 54
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
D + A RRAT++ + A D ++I L
Sbjct: 55 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 5e-43
Identities = 57/356 (16%), Positives = 123/356 (34%), Gaps = 53/356 (14%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVR 647
+ +P+ A RA +A+G+ + AL D +A+ DF +++
Sbjct: 30 VDGDPDNYIA-------------YYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 76
Query: 648 AANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQ 707
+ L G++++A F+ L+S E + + K E + +Q L
Sbjct: 77 RGHLLLKQGKLDEAEDDFKKVLKSNPS-------EQEEKEAESQLVKADEMQRLRSQALD 129
Query: 708 NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767
D A+ +D+ L + + +L E++AE + + I +
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA--------- 180
Query: 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALE---RHESGNGGK 824
+L S + I Y+ LG E +++ + + + +
Sbjct: 181 --------SKLKSDNTEAF--------YKISTLYYQLGDHELSLSEVRECLKLDQDH--- 221
Query: 825 MLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRA 884
+ V++L + E + GR+++A Y + + +
Sbjct: 222 --KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERIC 279
Query: 885 AAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ +AI C+ + ++ + + A+ RA Y + YD A D+
Sbjct: 280 HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 1e-17
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
G + AG+ ++A+ + AA+ + P I + RA + A+ A+ D
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAV----DGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
IAL ++ A +R L D A DF +++
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 100
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 6e-16
Identities = 33/225 (14%), Positives = 69/225 (30%), Gaps = 30/225 (13%)
Query: 717 ALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSM 776
AL A+ + +A + K + + + +
Sbjct: 22 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK-----------------VI 64
Query: 777 ELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER-HESGNGGKMLESLIPLAGT 835
L + + G+L+EA ++ +S + +
Sbjct: 65 ALKMDFTAAR--LQRGHL------LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116
Query: 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD 895
E+ +S +AF ++ A+ L E + A RA +
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKIL----EVCVWDAELRELRAECFIKEGEPRK 172
Query: 896 AIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
AI+D A L + +A + +TLY + D++ + S+ + L
Sbjct: 173 AISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVR 647
+K EP++A + + +A+ C + ++PD +
Sbjct: 261 MKTEPSVAEYTVRS---------KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD 311
Query: 648 AANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694
A +L ++A + + + + DQ + +GL+KAQ+
Sbjct: 312 RAEAYLIEEMYDEAIQDYEAAQEHNEN---DQ----QIREGLEKAQR 351
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 880 FCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIA 939
A + DA++ + A+ D + A RRAT++ + A D ++IA
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 940 L 940
L
Sbjct: 66 L 66
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-27
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 12/137 (8%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN F ++ EA Y A++ +P A+ + NRA Y ++ A+ADC
Sbjct: 13 KEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLAN 962
A+ LDG +KA + YD A ++ R + K + D ++ +
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY-----SLAKEQRLNFGD---DIPS 120
Query: 963 DLRQARMRLTAVEEEAR 979
LR A+ + EE R
Sbjct: 121 ALRIAKKKRWNSIEERR 137
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-10
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
+NRA + + + AL+DC A+ +D ++ C L + ++A +
Sbjct: 47 TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS- 105
Query: 672 GSDVCVDQKIAV--EASDGLQKAQK 694
+ +Q++ + L+ A+K
Sbjct: 106 ---LAKEQRLNFGDDIPSALRIAKK 127
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-27
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
+ G E F AV+ YT + + P A + NRAAA L +AIADCN
Sbjct: 8 RLEGKEYFTKSDWPNAVKAYTEMI----KRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSIN-LA 961
AI D N+++A R+AT +++Y A + +G S R I+ L
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR-----TKDAEVNNGSSAREIDQLY 118
Query: 962 NDLRQAR 968
Q R
Sbjct: 119 YKASQQR 125
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-09
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
SNRAA L +A++DC A+ DP+F+R +R A +A+ E A +
Sbjct: 42 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 6e-27
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
+ GNE F+ G + A+ YT AL + A+ NRAA + L A + +
Sbjct: 32 RKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
AI DG +KA+ RR+ E + D A D R ++L
Sbjct: 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-09
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
NRAA + L A ++ A+ D ++ R + LG ++ A + C+
Sbjct: 69 RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-26
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ GNE F+ G + A+ HY A+ + P AI + NRAA L A+ DC+
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAV----KRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
I LD ++K R+A +R++ A + + +
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 5e-11
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
SNRAA L + AL DC + +D F++ +R A C +A+ E A + + LQ
Sbjct: 51 SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ- 109
Query: 672 GSDVCVDQKIAVEASDGLQKAQK 694
VD EA +G++ +
Sbjct: 110 -----VDPSNE-EAREGVRNCLR 126
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-26
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN+A G +A++ Y+ A+ + P + + NR+AAY A D
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAI----KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ L ++ K SR+A E + ++ A + +
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 6e-10
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
SNR+A G + A D V + PD+ + R A L E+A + + L+
Sbjct: 41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-26
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ GNE FQ G + +A++HYT A+ + +P A + NRAA Y L A+ DC
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAI----KRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
I L+ ++K +R+A E ++DY A + + + L
Sbjct: 76 CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-10
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
SNRAA L + AL DC + ++P F++ R A A+ + A ++ L
Sbjct: 54 SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD- 112
Query: 672 GSDVCVDQKIAVEASDGLQKAQK 694
+D EA+DG Q+
Sbjct: 113 -----LDSSCK-EAADGYQRCMM 129
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-25
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ N+ F+A + A++ Y+ A+ E +P AI + NR+ AY A+ D
Sbjct: 17 KTQANDYFKAKDYENAIKFYSQAI----ELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
AI LD Y+K RRA + + A D+ ++ +
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-10
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
NR+ + AL D A+ +D +++ R A ++ALG+ A + + ++
Sbjct: 50 YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVK 109
Query: 671 SGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIAL 718
V +A Q+ K+ + + ++ +L
Sbjct: 110 ------VKPHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-25
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ GNE + AV Y A+ E +P A+ FCNRAAAY L + A+ DC
Sbjct: 16 KTEGNEQMKVENFEAAVHFYGKAI----ELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
AI +D Y KA R + + A + + + + L
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-09
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
NRAA LG A+ DC A+ IDP + + R +L + +A Y++ L+
Sbjct: 50 CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 7e-25
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 26/213 (12%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN F ++ EA Y A++ +P A+ + NRA Y ++ A+ADC
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLAN 962
A+ LDG +KA + YD A ++ R +L +Q ++ +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD--------DIPS 115
Query: 963 DLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLV 1022
LR A+ + EE R +++ L + R+ L
Sbjct: 116 ALRIAKKKRWNSIEERRIHQESELHSYL--------TRLIAAERERELEECQRNH----- 162
Query: 1023 RSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYA 1055
+ DDG + A + +K + E ++
Sbjct: 163 -EGHEDDGHIRAQQACIEAKHDKYMADMDELFS 194
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-12
Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 4/163 (2%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
+NRA + + + AL+DC A+ +D ++ C L + ++A +
Sbjct: 42 TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
Query: 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQ----LLQNKTSNDAEIALGVIDEALFI 727
+ ++ + ++ + K ++ + +R L T A ++E
Sbjct: 102 AKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRN 161
Query: 728 SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770
E ++A+ + K+++ + ++ F ++ D
Sbjct: 162 HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRD 204
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 4e-24
Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
KS GN A +S+A++ YT AL P I NRAAAY A A D L
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQAL----SIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSD 955
A +D Y KA SR + DY A + + I + + G+
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
LSNRAA A G+ A D LA +DP + + R + + + A + + ++
Sbjct: 48 LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107
Query: 671 SGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALG 719
+ + D GL+ ++ E R A+ + + A + G
Sbjct: 108 AEGNGGSD-----AMKRGLETTKRKIEEANRGAEPPADDVDDAAGASRG 151
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 3e-23
Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN F+ G + EAV Y + + P + + N+A A L T AI C
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLI----TAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 903 AIALDGNYLKAISRRATLYEM------IRDYDHAASDFHRLIALLTK 943
+ R Y + + + L +
Sbjct: 64 GLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDR 110
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-08
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFR 666
SN+A + LG A+ C + V +R+ L + A +
Sbjct: 42 SNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQ 95
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 2e-21
Identities = 54/364 (14%), Positives = 111/364 (30%), Gaps = 49/364 (13%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ 645
I+ +PN SN +A ++ G + + A+ I PD +
Sbjct: 50 YAIELDPNEPVF-------------YSNISACYISTGDLEKVIEFTTKALEIKPDHSKAL 96
Query: 646 VRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL 705
+R A+ + +LG DA + +G + +E + Q + ++E + +
Sbjct: 97 LRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR 156
Query: 706 LQNKTSNDAEI--ALGVIDEALFISSYSEKLLEMKAEALF------MLRKYEEVIQLCEQ 757
++ + G+ D L +SS + A AL + +E +
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216
Query: 758 TFHFAEKN-SPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816
+ L AN L + + + +F L +A L+
Sbjct: 217 LLTKSTDMYHSLLSANTVDDPLRENAALAL----CYTGIF----HFLKNNLLDAQVLLQE 268
Query: 817 HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA 876
I L T + E + + A+ + +P
Sbjct: 269 ------------SINLHPTPNSYIFL---ALTLADKENSQEFFKFFQKAV----DLNPEY 309
Query: 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936
+ +R Y L+ +A D A +L+ + + A L + + + F+
Sbjct: 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369
Query: 937 LIAL 940
Sbjct: 370 TKLK 373
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 1e-15
Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 805 GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTA 864
G + ++ L K+ GN F A +EA+++Y
Sbjct: 1 GSHMNGEPDIA--------QLKGLSPSQRQAYAVQL--KNRGNHFFTAKNFNEAIKYYQY 50
Query: 865 ALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924
A+ E P + + N +A Y + + I A+ + ++ KA+ RRA+ E +
Sbjct: 51 AI----ELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106
Query: 925 RDYDHAASDF 934
++ A D
Sbjct: 107 GNFTDAMFDL 116
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 7e-12
Identities = 37/378 (9%), Positives = 81/378 (21%), Gaps = 105/378 (27%)
Query: 585 GQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRV 644
+++ + + A + K + LS + + +
Sbjct: 197 SDALQRLYSATDEGYLVANDLLTK-----------STDMYHSLLSANTVDDPLRENAALA 245
Query: 645 QVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQ 704
H + DA + + + +
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESIN----------------------------LHPTPN 277
Query: 705 LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMK----------AEALFMLRKYEEVIQL 754
E + +K +++ + F+L+ Y+ +
Sbjct: 278 SYIFLAL--TLADKENSQEF--FKFF-QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332
Query: 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAAL 814
++ + L+ ++ CL + G+ E+ A
Sbjct: 333 FQK-----------------AQSLNPENVYPYIQ----LACL----LYKQGKFTESEAFF 367
Query: 815 ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS------- 867
+ P T+ E+ G A++ Y A
Sbjct: 368 N--------ETKL-KFP---TLPEVPTFF--AEILTDRGDFDTAIKQYDIAKRLEEVQEK 413
Query: 868 -----CTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922
+ ++ AI A LD +A A L
Sbjct: 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473
Query: 923 MIRDYDHAASDFHRLIAL 940
+ D A F L
Sbjct: 474 QMEKIDEAIELFEDSAIL 491
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 5e-11
Identities = 40/331 (12%), Positives = 88/331 (26%), Gaps = 54/331 (16%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
L NR +A+ A+ +DP+ + C+++ G++E ++ L+
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 671 SGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY 730
+ + + + R A ++ LG +A +
Sbjct: 88 ------IKPDHS--------------KALLRRASANES---------LGNFTDA--MFDL 116
Query: 731 SE-KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789
S L A + + + + + ++ S ++ F
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEG-----RGSQVLPSNTSLASFF 171
Query: 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849
++ L S T + A A L L+ L + +
Sbjct: 172 GIFDSHLEVSSVNTSSNYDTAYALL--------SDALQRLYSATDEGYLV----ANDLLT 219
Query: 850 FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN 909
+ + T AA+ C + ++ DA +I L
Sbjct: 220 KSTDMYHSLLSANTVDD----PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275
Query: 910 YLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ A + F + + L
Sbjct: 276 P-NSYIFLALTLADKENSQEFFKFFQKAVDL 305
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 42/378 (11%), Positives = 85/378 (22%), Gaps = 96/378 (25%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ 645
+ N A A L + DA ++ + P
Sbjct: 234 VDDPLRENAALA-------------LCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSY 279
Query: 646 VRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL 705
+ A ++ K+F+ + + Q+
Sbjct: 280 IFLALTLADKENSQEFFKFFQKAVDLNPEY--------------------PPTYYHRGQM 319
Query: 706 LQNKTSNDAEIALGVIDEALFISSYSEKLLEMK----------AEALFMLRKYEEVIQLC 755
L A + +K + A L+ K+ E
Sbjct: 320 YFI---------LQDYKNA--KEDF-QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367
Query: 756 EQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIA--- 812
+ + + + G + AI
Sbjct: 368 NE-----------------TKLKFPTLPEVP--------TFFAEILTDRGDFDTAIKQYD 402
Query: 813 -ALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE 871
A E K+ + PL G L + S + + A++ T A E
Sbjct: 403 IAKRLEE--VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC----E 456
Query: 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS-----RRATLYEMIRD 926
P + A + I +AI + L + + A + + +R
Sbjct: 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRA 516
Query: 927 YDHAASDFHRLIALLTKQ 944
++ +A +
Sbjct: 517 DPIISAKMELTLARYRAK 534
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 15/88 (17%), Positives = 26/88 (29%)
Query: 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912
G H + A+ NR + ++ +AI AI LD N
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 913 AISRRATLYEMIRDYDHAASDFHRLIAL 940
S + Y D + + + +
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEI 88
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-21
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 11/105 (10%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN+A++ A++HY A E P N+AA Y C
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAK----ELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 903 AIALDGN-------YLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
AI + KA +R Y Y A +++ +A
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 6e-07
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQV-------RAANCHLALGEIEDASK 663
++N+AA G C A+ + + R N + + +DA
Sbjct: 41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100
Query: 664 YFRMCLQ 670
++ L
Sbjct: 101 FYNKSLA 107
|
| >2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 1e-20
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILG + S +++D+K+ Y+K L +HPDK D A ++
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDK---------QSTDV-----PAGTVEECV 56
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ F I +A+ +L + + YD
Sbjct: 57 QKFIEIDQAWKILGNEETKREYD 79
|
| >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 3e-20
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILG + S +++D+K+ Y+K L +HPDK D A ++
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDK---------QSADV-----PAGTMEECM 62
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ F I +A+ +L + + +YD
Sbjct: 63 QKFIEIDQAWKILGNEETKKKYD 85
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 3e-20
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN A++ +A HY A+ E P + N+AA Y + + + C
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAI----ELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 903 AIALDGN-------YLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
A+ + KA+SR ++ D A FHR ++
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQV-------RAANCHLALGEIEDASK 663
+N+AA + + + C AV + + RA N ++ A +
Sbjct: 45 YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104
Query: 664 YFRMCLQ 670
+F L
Sbjct: 105 WFHRSLS 111
|
| >2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 3e-20
Identities = 36/83 (43%), Positives = 42/83 (50%), Gaps = 19/83 (22%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
Y IL V S S DIK+ YR+ AL+ HPDK N D+ + AE
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDK---------NPDN----------KEFAE 43
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
K FK +AEAY VLSD KR YD
Sbjct: 44 KKFKEVAEAYEVLSDKHKREIYD 66
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 4e-20
Identities = 48/331 (14%), Positives = 98/331 (29%), Gaps = 42/331 (12%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
SN +A +++G ++ + A+ + PD+ +V +R A+ + LG+ DA
Sbjct: 43 SNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL------ 96
Query: 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS 731
+++ + + E + L + + + G ID A +
Sbjct: 97 -------SVLSLNGDFNDASIEPMLE------RNLNKQAMSKLKEKFGDIDTATATPTEL 143
Query: 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRL 791
+ + + F + ++N EL +
Sbjct: 144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG---------- 193
Query: 792 WRCCLIFKSYFTLGRLEEAIAALERHESGNGG--KMLESLIPLAGTVRELLCRKSAGNEA 849
L + ++A + + L + L + G
Sbjct: 194 ----LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL--EHTGIFK 247
Query: 850 FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN 909
F A E A+ E P + A T+ + A+ LD N
Sbjct: 248 FLKNDPLGAHEDIKKAI----ELFPRVNS-YIYMALIMADRNDSTEYYNYFDKALKLDSN 302
Query: 910 YLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
R + ++++YD A DF + L
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 1e-15
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN+ F+ ++ +A+++Y AL + + N +A Y ++ + +
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALEL----KE-DPVFYSNLSACYVSVGDLKKVVEMSTK 64
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDF 934
A+ L +Y K + RRA+ E + + A D
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDL 96
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 2e-14
Identities = 46/363 (12%), Positives = 94/363 (25%), Gaps = 70/363 (19%)
Query: 587 EIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQV 646
+ + N AS E + R + A+ ++++ D A A +
Sbjct: 100 SLNGDFNDASIEPML-----------ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148
Query: 647 RAA-NCHLALGEIEDASKYFRMCLQSGSDVCVDQ--KIAVEASDGLQKAQKVSECMQRSA 703
+ + L + + +F + + D+ + E +GL K S A
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA 208
Query: 704 QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAE 763
K + E L +E + LE F+ + ++
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK------ 262
Query: 764 KNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGG 823
++EL V+ ++ + E +
Sbjct: 263 -----------AIELFP-----RVNSYIYMALI----MADRNDSTEYYNYFD-------- 294
Query: 824 KMLESLIPLAGTVRELLCRKSA------GNEAFQAGRHSEAVEHYTAALSCTVESHPFAA 877
K L+ L ++ G F + +A + + A P
Sbjct: 295 KALK------------LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL----DPENI 338
Query: 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937
+ A D + A + + A + D+D A +
Sbjct: 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398
Query: 938 IAL 940
I L
Sbjct: 399 IEL 401
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 4e-13
Identities = 42/415 (10%), Positives = 113/415 (27%), Gaps = 84/415 (20%)
Query: 543 SNFTFAASSASQASPLLSSGQEERGDLFSSRLKGDRNSEVDR--------GQEIKQEPNL 594
+ A ++ ++ S + ++++ + S + + + + + L
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190
Query: 595 ASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA 654
+ + + + E + ++ + T+ A + L +
Sbjct: 191 MNGLSNLYKRSPESYDKADESFTK-AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 655 LGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDA 714
+ A + + ++ V +A+ ++ ++ ND+
Sbjct: 250 KNDPLGAHEDIKKAIELFPRVNSYIYMAL---------------------IMADR--NDS 286
Query: 715 EIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQ 774
D+AL + S + + + + F+L+ Y++ + ++
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK----------------- 329
Query: 775 SMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834
+ ELD ++ CL + + ++
Sbjct: 330 AKELDPENIFPYIQ----LACL----AYRENKFDDCETLFSE------------AKRKFP 369
Query: 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAY------- 887
E+ +A++ Y A+ E + A
Sbjct: 370 EAPEVPNFF--AEILTDKNDFDKALKQYDLAI----ELENKLDGIYVGIAPLVGKATLLT 423
Query: 888 --KALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ + +A A LD +A A + D D A + F L
Sbjct: 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 3e-11
Identities = 43/387 (11%), Positives = 92/387 (23%), Gaps = 87/387 (22%)
Query: 557 PLLSSGQEERGDLFSSRLKGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAA 616
++ + F+ + ++ K + LA + L +
Sbjct: 199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS-------------LEHTGI 245
Query: 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676
+ A D A+ + P + A + + YF L+ S+
Sbjct: 246 FKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLDSNN- 303
Query: 677 VDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLE 736
S Q+ + + A D+A + +
Sbjct: 304 -------------------SSVYYHRGQMNFIL--QNYDQAGKDFDKAKELDPENIFPYI 342
Query: 737 MKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCL 796
A + K+++ L + A++ P ++ E
Sbjct: 343 QLACLAYRENKFDDCETLFSE----AKRKFP-----------EAPE------------VP 375
Query: 797 IFK--SYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVR----ELLCRKSAGNEAF 850
F ++A+ + +E L + L+ + +
Sbjct: 376 NFFAEILTDKNDFDKALKQYD--------LAIE-LENKLDGIYVGIAPLVGKATLLTRNP 426
Query: 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
EA A + P + A I +AI + L
Sbjct: 427 TVENFIEATNLLEKAS----KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482
Query: 911 LKAIS----RRATLYEM-IRDYDHAAS 932
+ + A + IR A
Sbjct: 483 EEKLQAITFAEAAKVQQRIRSDPVLAK 509
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 5e-11
Identities = 37/336 (11%), Positives = 94/336 (27%), Gaps = 51/336 (15%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
L ++ + DA+ A+ + D + +A C++++G+++ + L+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSA-CYVSVGDLKKVVEMSTKALE 67
Query: 671 SGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY 730
+ + + + R A + A+ + +
Sbjct: 68 ------LKPDYS--------------KVLLRRASANEGL--GKFADAMFDLSVLSLNGDF 105
Query: 731 SEKLLEM---KAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHV 787
++ +E + + K +E + + S + + + T
Sbjct: 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS-- 163
Query: 788 SFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847
S+F + + E A + + +++ L L ++S +
Sbjct: 164 ----------MASFFGIFKPELTFANYDESNEAD-KELMNGLSNLY--------KRSPES 204
Query: 848 EAFQAGRHSEAVEHYTAALSC---TVESHPFAAICFCNRAAAYKALRHITDAIADCNLAI 904
++A + L + AI + A D AI
Sbjct: 205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264
Query: 905 ALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
L + A + D + F + + L
Sbjct: 265 ELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKL 299
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 32/160 (20%)
Query: 801 YFTLGRLEEAIA----ALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA-GRH 855
+F + ++AI ALE L SA + + G
Sbjct: 16 FFRNKKYDDAIKYYNWALE-------------LKEDP----VFYSNLSA---CYVSVGDL 55
Query: 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCN-LAIALDGN--YLK 912
+ VE T AL E P + RA+A + L DA+ D + L++ D N ++
Sbjct: 56 KKVVEMSTKAL----ELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIE 111
Query: 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSG 952
+ R + + D A T+ + +
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 5e-20
Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 26/152 (17%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSC--------------TVESHPFAAICFCNRAAAYK 888
+ GNE F + EA++ Y AL+ VE + N + Y
Sbjct: 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL 74
Query: 889 ALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948
+ + +A + + + KA+ RRA D A D L+ + +
Sbjct: 75 NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL-----RNHPA 129
Query: 949 NQSGVSDRSINLANDLRQARMRLTAVEEEARK 980
S V A +++ R + ++R
Sbjct: 130 AASVV-------AREMKIVTERRAEKKADSRV 154
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 8/60 (13%), Positives = 26/60 (43%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
+N + + +G + +A + + + R A +A ++++A + ++ L+
Sbjct: 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125
|
| >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 5e-20
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 19/83 (22%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +L V S IK+ YRK AL+ HPDK N ++ ++AE
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDK---------NPEN----------KEEAE 50
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK +AEAY VLSD KR YD
Sbjct: 51 RRFKQVAEAYEVLSDAKKRDIYD 73
|
| >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 8e-20
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
+Y +LG++ + + DIK+ YRK AL++HPDK N D+ +A
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDK---------NPDN-----------PEAA 57
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
FK I A+A+L+D +KR+ YD
Sbjct: 58 DKFKEINNAHAILTDATKRNIYD 80
|
| >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 8e-20
Identities = 35/83 (42%), Positives = 42/83 (50%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y LG+ S +IKR YR+ ALR+HPDK N + AE
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDK---------NKE------------PGAE 42
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK IAEAY VLSDP KR +D
Sbjct: 43 EKFKEIAEAYDVLSDPRKREIFD 65
|
| >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-19
Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 19/83 (22%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
+ Y +LGV++S S DIK+ YRK ALR HPDK N D+ ++AE
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDK---------NPDN----------KEEAE 50
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
K FK+++EAY VLSD KRS YD
Sbjct: 51 KKFKLVSEAYEVLSDSKKRSLYD 73
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 1e-19
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 23/142 (16%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
+ Y +LGV + S +I++ ++K AL+ HPDK N ++ +A
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDK---------NPNN-----------PNAH 42
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQ 1104
F I AY VL D R +YD E + + + Y +
Sbjct: 43 GDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITL 102
Query: 1105 WREVRRSYDNSAARGDIYSISF 1126
RR +D + G+++ ++F
Sbjct: 103 ---ERREFDAAVNSGELWFVNF 121
|
| >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 4e-19
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV + S +IK+ Y + A ++HPD N DD A+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDT---------NKDD-----------PKAK 47
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ F +AEAY VLSD KR +YD
Sbjct: 48 EKFSQLAEAYEVLSDEVKRKQYD 70
|
| >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 4e-19
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
+Y +LGV S+ + A IK Y + +HPD+ N +A
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDR---------NSGS-----------AEAA 57
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ F I++AY VL + R +YD
Sbjct: 58 ERFTRISQAYVVLGSATLRRKYD 80
|
| >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 9e-19
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 23/83 (27%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
Y +LGV+ S ++K+ YRK AL+ HPDK + D
Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDK-----------------------NPDGA 45
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I++AY VLSD KR YD
Sbjct: 46 EQFKQISQAYEVLSDEKKRQIYD 68
|
| >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 1e-18
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV + +I++ Y++ A+++HPD+ N D K+AE
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR---------NQGD-----------KEAE 43
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
FK I EAY VL+D KR+ YD
Sbjct: 44 AKFKEIKEAYEVLTDSQKRAAYD 66
|
| >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-18
Identities = 33/83 (39%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV S D+K+ YR+ AL+ HPDK N A
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDK---------NHA------------PGAT 46
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I AYAVLS+P KR +YD
Sbjct: 47 EAFKAIGTAYAVLSNPEKRKQYD 69
|
| >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 2e-18
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LG + SV I ++ AL HPDK + ++ A
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDK---------HPEN-----------PKAV 60
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ F+ + +A +L++ R+RYD
Sbjct: 61 ETFQKLQKAKEILTNEESRARYD 83
|
| >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-18
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
Y ILGV S S IK+ + K A+++HPDK N DAE
Sbjct: 8 SYYDILGVPKSASERQIKKAFHKLAMKYHPDK---------NKS------------PDAE 46
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
F+ IAEAY LSD ++R YD
Sbjct: 47 AKFREIAEAYETLSDANRRKEYD 69
|
| >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 5e-18
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 985 DMYLILGVE-SSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDA 1043
+ Y +L V + + YR A +HHPD+ + E A
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDR---------VKNK--------EEKLLA 58
Query: 1044 EKLFKMIAEAYAVLSDPSKRSRYD 1067
E+ F++IA AY L D ++ YD
Sbjct: 59 EERFRVIATAYETLKDDEAKTNYD 82
|
| >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 5e-18
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LGV + S ADIK+ Y+K A HPDK N D AE
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDK---------NKD------------PGAE 56
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
F I++AY +LS+ KR+ YD
Sbjct: 57 DRFIQISKAYEILSNEEKRTNYD 79
|
| >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 5e-18
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV+ + + IK YR+ A ++HPD + + DAE
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDV---------SKE------------NDAE 67
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
FK +AEA+ VL D +R+ YD
Sbjct: 68 AKFKDLAEAWEVLKDEQRRAEYD 90
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 9e-18
Identities = 57/269 (21%), Positives = 88/269 (32%), Gaps = 79/269 (29%)
Query: 713 DAEIALGVI-------DEALFISSYSEKLLEM---------KAEALFMLRKYEEVIQLCE 756
D E A G DEA I Y K E+ +A A + +YE I
Sbjct: 6 DKEKAEGNKFYKARQFDEA--IEHY-NKAWELHKDITYLNNRAAAEYEKGEYETAISTLN 62
Query: 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816
++E + +I KS+ +G + L++
Sbjct: 63 D-----------------AVEQGREMRADY--------KVISKSFARIGNAYHKLGDLKK 97
Query: 817 -----------HESGNGGKMLESLIPLAGTVRELLCRKSA--------------GNEAFQ 851
H + + L + +EL ++ G E F
Sbjct: 98 TIEYYQKSLTEHRTADILTKLRNAE------KELKKAEAEAYVNPEKAEEARLEGKEYFT 151
Query: 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911
AV+ YT + + P A + NRAAA L +AIADCN AI D N++
Sbjct: 152 KSDWPNAVKAYTEMI----KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 207
Query: 912 KAISRRATLYEMIRDYDHAASDFHRLIAL 940
+A R+AT +++Y A
Sbjct: 208 RAYIRKATAQIAVKEYASALETLDAARTK 236
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 46/335 (13%), Positives = 85/335 (25%), Gaps = 96/335 (28%)
Query: 592 PNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANC 651
++A E + +A+ A + D + RA
Sbjct: 2 GSMADKE-------------KAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRA-AA 47
Query: 652 HLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTS 711
GE E A ++ G ++ + ++
Sbjct: 48 EYEKGEYETAISTLNDAVEQGREM--------------------RADYKVISKSFARI-- 85
Query: 712 NDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771
+A LG + + + S A+ L LR E+ ++ E + + +
Sbjct: 86 GNAYHKLGDLKKTIEYYQKSLTEHR-TADILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144
Query: 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIP 831
G K YFT A+ A +M++ P
Sbjct: 145 EG-------------------------KEYFTKSDWPNAVKAYT--------EMIK-RAP 170
Query: 832 --------LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNR 883
A + +L EA+ A+ E P + +
Sbjct: 171 EDARGYSNRAAALAKL-------------MSFPEAIADCNKAI----EKDPNFVRAYIRK 213
Query: 884 AAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918
A A A++ A+ + A D S R
Sbjct: 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVR 647
IK+ P A SNRAA L +A++DC A+ DP+F+R +R
Sbjct: 166 IKRAPEDARG-------------YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212
Query: 648 AANCHLALGEIEDASKYFRMCLQ 670
A +A+ E A +
Sbjct: 213 KATAQIAVKEYASALETLDAART 235
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936
A + R +AI N A L + ++ RA +Y+ A S +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLND 63
Query: 937 LIAL 940
+
Sbjct: 64 AVEQ 67
|
| >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-17
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 23/83 (27%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
+Y +LGV S + ++K+GYRKAAL++HPDK D E
Sbjct: 9 KLYDLLGVSPSANEQELKKGYRKAALKYHPDK---------PTGDT-------------E 46
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
K FK I+EA+ +L+DP KR YD
Sbjct: 47 K-FKEISEAFEILNDPQKREIYD 68
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 2e-17
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 25/150 (16%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA------------AICFCNRAAAYKAL 890
K GNE F+ +EA+ Y AL + + + C N A Y
Sbjct: 42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101
Query: 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQ 950
+ AI + + +D N +KA+ + + A + ++ + +N
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA-----SLNPNNL 156
Query: 951 SGVSDRSINLANDLRQARMRLTAVEEEARK 980
++ N +L ++ +
Sbjct: 157 --------DIRNSYELCVNKLKEARKKDKL 178
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 8/60 (13%), Positives = 19/60 (31%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
N A A+ + ID + ++ + ++ G +E+A +
Sbjct: 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 4e-17
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ N+ F+A + A++ Y+ A+ E +P AI + NR+ AY A+ D
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAI----ELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
AI LD Y+K RRA + + A D+ ++ +
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 13/60 (21%), Positives = 27/60 (45%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
NR+ + AL D A+ +D +++ R A ++ALG+ A + + ++
Sbjct: 44 GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 4e-17
Identities = 59/384 (15%), Positives = 118/384 (30%), Gaps = 106/384 (27%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVR 647
+QEP+ L ++ R+ + LA+ +P
Sbjct: 26 WRQEPDNTGV-------------LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72
Query: 648 AANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA----SDGLQKAQKVSECMQRSA 703
N + G++++A +++R L+ D ++ + L A + +Q
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDF-------IDGYINLAAALVAAGDMEGAVQAYV 125
Query: 704 QLLQNKTSNDAEI---------ALGVIDEALFISSYSEKLLEMK---AEA-------LFM 744
LQ + + ALG ++EA + Y K +E + A A
Sbjct: 126 SALQYN-PDLYCVRSDLGNLLKALGRLEEA--KACY-LKAIETQPNFAVAWSNLGCVFNA 181
Query: 745 LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL 804
+ I E+ ++ LD + +++ +
Sbjct: 182 QGEIWLAIHHFEK-----------------AVTLDPNFLDAYIN--------LGNVLKEA 216
Query: 805 GRLEEAIAALERHESGNGGKMLESLIP--------LAGTVRELLCRKSAGNEAFQAGRHS 856
+ A+AA + L L P LA E G
Sbjct: 217 RIFDRAVAAYL--------RALS-LSPNHAVVHGNLACVYYEQ-------------GLID 254
Query: 857 EAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916
A++ Y A+ E P +CN A A K + +A N A+ L + +++
Sbjct: 255 LAIDTYRRAI----ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310
Query: 917 RATLYEMIRDYDHAASDFHRLIAL 940
A + + + A + + + +
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEV 334
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 9e-17
Identities = 57/366 (15%), Positives = 110/366 (30%), Gaps = 104/366 (28%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVR 647
++ +P+ N AA +A G M A+ + A+ +PD V+
Sbjct: 94 LRLKPDFIDG-------------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140
Query: 648 AANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQ 707
N ALG +E+A + +++ + A L +
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNL-------------GCVFN 180
Query: 708 NKTSNDAEIALGVIDEALFISSYSEKLLEMK----------AEALFMLRKYEEVIQLCEQ 757
G I A I + EK + + L R ++ + +
Sbjct: 181 A---------QGEIWLA--IHHF-EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 758 TFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER- 816
++ L + + H + C+ Y+ G ++ AI R
Sbjct: 229 -----------------ALSLSPNHAVVHGN----LACV----YYEQGLIDLAIDTYRRA 263
Query: 817 --HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874
+ ++ LA ++E G +EA + Y AL P
Sbjct: 264 IELQPHF----PDAYCNLANALKEK-------------GSVAEAEDCYNTAL----RLCP 302
Query: 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDF 934
A N A + +I +A+ A+ + + A S A++ + A +
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 935 HRLIAL 940
I +
Sbjct: 363 KEAIRI 368
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-16
Identities = 54/338 (15%), Positives = 86/338 (25%), Gaps = 85/338 (25%)
Query: 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672
A G A CM +PD V + ++ H ++ ++ + + ++
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE 732
A+ N + G + EA I Y
Sbjct: 64 PL---------------------------LAEAYSNL--GNVYKERGQLQEA--IEHY-R 91
Query: 733 KLLEMK----------AEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782
L +K A AL E +Q +++ +
Sbjct: 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS-----------------ALQYNPDL 134
Query: 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCR 842
L LGRLEEA A + I
Sbjct: 135 YCVR--SDLGNL------LKALGRLEEAKACYLK------------AIETQPNFAVAWSN 174
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
G G A+ H+ A+ P + N K R A+A
Sbjct: 175 L--GCVFNAQGEIWLAIHHFEKAV----TLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
A++L N+ A +Y D A + R I L
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 9e-13
Identities = 57/348 (16%), Positives = 97/348 (27%), Gaps = 106/348 (30%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVR 647
++ P+L S+ ALGR+ +A + + A+ P+F
Sbjct: 128 LQYNPDLYCV-------------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 648 AANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQ 707
A GEI A +F + + ++A L +L+
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNF-------LDAYINL-------------GNVLK 214
Query: 708 NKTSNDAEIALGVIDEALFISSYSEKLLEMK----------AEALFMLRKYEEVIQLCEQ 757
+ D A +++Y + L + A + + I +
Sbjct: 215 E---------ARIFDRA--VAAY-LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262
Query: 758 TFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIA----A 813
++EL + C + + G + EA A
Sbjct: 263 -----------------AIELQPHFPDAY--------CNLANALKEKGSVAEAEDCYNTA 297
Query: 814 LERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873
L +SL LA RE G EAV Y AL E
Sbjct: 298 LRLC-----PTHADSLNNLANIKREQ-------------GNIEEAVRLYRKAL----EVF 335
Query: 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921
P A N A+ + + +A+ AI + + A S
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 9e-05
Identities = 48/313 (15%), Positives = 82/313 (26%), Gaps = 98/313 (31%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVR 647
I+ +PN A A SN A G + A+ AV +DP+FL +
Sbjct: 162 IETQPNFAVA-------------WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208
Query: 648 AANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQ 707
N + A + L + L A +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNL-------------ACVYY 248
Query: 708 NKTSNDAEIALGVIDEALFISSYSEKLLEMK----------AEALFMLRKYEEVIQLCEQ 757
G+ID A I +Y + +E++ A AL E
Sbjct: 249 E---------QGLIDLA--IDTY-RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN- 295
Query: 758 TFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERH 817
++ L + + + + G +EEA+ +
Sbjct: 296 ----------------TALRLCPTHADSLNN--------LANIKREQGNIEEAVRLYRK- 330
Query: 818 ESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA 877
+ + + Q G+ EA+ HY A+ P A
Sbjct: 331 -----------ALEVFPEFAAAHSNL--ASVLQQQGKLQEALMHYKEAIRI----SPTFA 373
Query: 878 ICFCNRAAAYKAL 890
+ N K +
Sbjct: 374 DAYSNMGNTLKEM 386
|
| >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 9e-17
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 26/85 (30%)
Query: 985 DMYLILGVE--SSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKD 1042
+ +LG+E + ++ +++ Y K HPDK G D
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG-----------------------D 48
Query: 1043 AEKLFKMIAEAYAVLSDPSKRSRYD 1067
EK K + Y + D K +
Sbjct: 49 EEK-MKKMNTLYKKMEDGVKYAHQP 72
|
| >2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 6e-16
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D + +LGV+ S ++ + YRK A+ HPDK G +E
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK---------CVAPG------------SE 66
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
FK + A L K
Sbjct: 67 DAFKAVVNARTALLKNIKSGPSS 89
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 6e-16
Identities = 33/377 (8%), Positives = 83/377 (22%), Gaps = 76/377 (20%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ 645
Q P A +++ + AL ++ L A + P+ +
Sbjct: 131 QAHGLTPEQVVA-------------IASHDGGKQALETVQALLPVLCQAHGLTPEQVVAI 177
Query: 646 VRAANCHLALGEIEDASKYFRMCLQSGSD----------VCVDQKIAVEASDGLQKAQKV 695
AL ++ + L +A +
Sbjct: 178 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 237
Query: 696 SECMQRSAQLLQN-----KTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEE 750
+ + + + + + L V+ +A ++ + + L +
Sbjct: 238 T---PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQR 294
Query: 751 VIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEA 810
++ + Q + L + S L ++
Sbjct: 295 LLPVLCQ-----------------AHGLTPQQVVAIAS----NG----GGKQALETVQRL 329
Query: 811 IAALERHESGNGGKMLESLIP-LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869
+ L + L P + + A
Sbjct: 330 LPVLC--------QAHG-LTPQQVVAIASH------DGGKQALETVQRLLPVLCQAH--- 371
Query: 870 VESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDH 929
P + + +AL + + A L + AI+ + +
Sbjct: 372 -GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQR 430
Query: 930 AASDFHRLIALLTKQIE 946
+ L +Q+
Sbjct: 431 LLPVLCQAHGLTPQQVV 447
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 8e-16
Identities = 38/379 (10%), Positives = 84/379 (22%), Gaps = 80/379 (21%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ 645
Q P A +++ + AL ++ L A + P+ +
Sbjct: 97 QAHGLTPQQVVA-------------IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAI 143
Query: 646 VRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL 705
AL ++ + V L+ Q++ + ++ L
Sbjct: 144 ASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL 203
Query: 706 LQNKTSNDAEI---------ALGVIDEALFISSYSEKL---------LEMKAEALFMLRK 747
T AL + + + + L
Sbjct: 204 ----TPQQVVAIASNGGGKQALETVQRL--LPVLCQAHGLTPQQVVAIASNGGGKQALET 257
Query: 748 YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRL 807
+ ++ + Q + L + S L +
Sbjct: 258 VQRLLPVLCQ-----------------AHGLTPQQVVAIAS----NSGG----KQALETV 292
Query: 808 EEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867
+ + L + L +A S G + A
Sbjct: 293 QRLLPVLCQAHG------LTPQQVVA--------IASNGGGKQALETVQRLLPVLCQAHG 338
Query: 868 CTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927
T P + + +AL + + A L + AI+ + +
Sbjct: 339 LT----PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETV 394
Query: 928 DHAASDFHRLIALLTKQIE 946
+ L +Q+
Sbjct: 395 QRLLPVLCQAHGLTPEQVV 413
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 2e-14
Identities = 36/377 (9%), Positives = 82/377 (21%), Gaps = 84/377 (22%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ 645
Q P A +++ + AL ++ L A + P +
Sbjct: 165 QAHGLTPEQVVA-------------IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 211
Query: 646 VRAANCHLALGEIEDASKYFRMCLQSGSD----------VCVDQKIAVEASDGLQKAQKV 695
AL ++ + L +A +
Sbjct: 212 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 271
Query: 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMK----------AEALFML 745
+ + + + + + AL + + + + L
Sbjct: 272 T---PQQVVAIASN--SGGKQALETVQRL--LPVL-CQAHGLTPQQVVAIASNGGGKQAL 323
Query: 746 RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLG 805
+ ++ + Q + L + S L
Sbjct: 324 ETVQRLLPVLCQ-----------------AHGLTPQQVVAIAS----HDGG----KQALE 358
Query: 806 RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAA 865
++ + L + T +++ S G + A
Sbjct: 359 TVQRLLPVLCQ--------------AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQA 404
Query: 866 LSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR 925
T P + + +AL + + A L + AI+ +
Sbjct: 405 HGLT----PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALE 460
Query: 926 DYDHAASDFHRLIALLT 942
S +A LT
Sbjct: 461 SIVAQLSRPDPALAALT 477
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-13
Identities = 34/336 (10%), Positives = 88/336 (26%), Gaps = 65/336 (19%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
+++ + AL ++ L A + P + AL ++
Sbjct: 75 IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 134
Query: 671 SGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY 730
+ +Q +A+ + DG ++A + + L V+ +A ++
Sbjct: 135 ----LTPEQVVAIASHDGGKQALE------------------TVQALLPVLCQAHGLTPE 172
Query: 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790
+ L + ++ + Q + + +NG
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG--------------- 217
Query: 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850
L ++ + L + T ++++ S G
Sbjct: 218 ----------KQALETVQRLLPVLCQ--------------AHGLTPQQVVAIASNGGGKQ 253
Query: 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
+ A T + + + + +AL + + A L
Sbjct: 254 ALETVQRLLPVLCQAHGLTPQQ----VVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309
Query: 911 LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946
+ AI+ + + + L +Q+
Sbjct: 310 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 345
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-12
Identities = 35/328 (10%), Positives = 83/328 (25%), Gaps = 69/328 (21%)
Query: 620 ALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ 679
A+ R+AL+ + + P+ + AL ++ + Q
Sbjct: 52 AVHAWRNALTG--APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPQQ 105
Query: 680 KIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKA 739
+A+ + DG ++A + + L V+ +A ++ +
Sbjct: 106 VVAIASHDGGKQALE------------------TVQRLLPVLCQAHGLTPEQVVAIASHD 147
Query: 740 EALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFK 799
L + ++ + Q + + +NG
Sbjct: 148 GGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGG------------------------ 183
Query: 800 SYFTLGRLEEAIAALERHESGNGGKMLESLIP-LAGTVRELLCRKSAGNEAFQAGRHSEA 858
L ++ + L + L P + G
Sbjct: 184 -KQALETVQRLLPVLC--------QAHG-LTPQQVVAIASN------GGGKQALETVQRL 227
Query: 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918
+ A T P + + +AL + + A L + AI+ +
Sbjct: 228 LPVLCQAHGLT----PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283
Query: 919 TLYEMIRDYDHAASDFHRLIALLTKQIE 946
+ + + L +Q+
Sbjct: 284 GGKQALETVQRLLPVLCQAHGLTPQQVV 311
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 36/333 (10%), Positives = 76/333 (22%), Gaps = 79/333 (23%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ 645
Q P A +++ + AL ++ L A + P +
Sbjct: 233 QAHGLTPQQVVA-------------IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 279
Query: 646 VRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL 705
+ AL ++ G Q + V
Sbjct: 280 ASNSGGKQALETVQRLLPVLCQAHGLTPQ---QVVAIASNGGGKQALETVQR-------- 328
Query: 706 LQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765
L V+ +A ++ + L + ++ +
Sbjct: 329 -----------LLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC--------- 368
Query: 766 SPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKM 825
Q+ L + S L ++ + L +
Sbjct: 369 --------QAHGLTPEQVVAIAS--------NGGGKQALETVQRLLPVLC--------QA 404
Query: 826 LESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAA 885
L P +++ S + A T P + +
Sbjct: 405 HG-LTP-----EQVVAIASHDGGKQALETVQRLLPVLCQAHGLT----PQQVVAIASNGG 454
Query: 886 AYKALRHITDAIADCNLAIALDGN-YLKAISRR 917
AL I ++ + A+A N +L A++
Sbjct: 455 GRPALESIVAQLSRPDPALAALTNDHLVALACL 487
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 5e-09
Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 8/141 (5%)
Query: 814 LERHES---GNGGKMLESLIPLAGTVRELLCRKSAGN----EAFQAGRHSEAVEHYTAAL 866
LE H +G + LE+L+ +AG +R + G EAV + AL
Sbjct: 1 LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60
Query: 867 SC-TVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR 925
+ + P + + +AL + + A L + AI+ + +
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 926 DYDHAASDFHRLIALLTKQIE 946
+ L +Q+
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVV 141
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
+++ + AL ++ L A + P + AL I L
Sbjct: 415 IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALA 474
Query: 671 SGSDVCVDQKIAVEASDGLQKA 692
+ ++ D +A+ A G + A
Sbjct: 475 ALTN---DHLVAL-ACLGGRPA 492
|
| >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 3e-15
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 26/85 (30%)
Query: 985 DMYLILGVE--SSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKD 1042
+ +LG+E + ++ +++ Y K HPDK G D
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG-----------------------D 45
Query: 1043 AEKLFKMIAEAYAVLSDPSKRSRYD 1067
EK K + Y + D K +
Sbjct: 46 EEK-MKKMNTLYKKMEDGVKYAHQP 69
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 7e-15
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSC-----------TVESHPFAAICFCNRAAAYKALR 891
K G F+ G++ +A+ Y +S ++ N A + L+
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 892 HITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ AI CN A+ LD N K +SRR + + D++ A +DF +++ L
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 6e-05
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
N A + L A+ C A+ +D + + R HLA+ + E A F+ LQ
Sbjct: 199 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 9e-15
Identities = 48/415 (11%), Positives = 106/415 (25%), Gaps = 78/415 (18%)
Query: 573 RLKGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCM 632
L G+ N + + + A R L A
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY------LRGQVYTNLSNFDRAKECYK 224
Query: 633 LAVAIDPDFLRVQVRAANCHLALGEIEDA---SKYFRMCLQSGSDVCVDQKIAVEASDGL 689
A+ +D + + HL + E + + + +
Sbjct: 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH 284
Query: 690 QKAQKVSECMQRSAQLLQNKT---SNDAEI---------ALGVIDEALFISSYSEKLLEM 737
+ + +E S L+ + A+ L + + L I Y+ + +
Sbjct: 285 EDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344
Query: 738 KAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLI 797
+L + ++ + + P + + + +
Sbjct: 345 HLASLHESGEKNKLYLI----SNDLVDRHP-----------EKAVT----------WLAV 379
Query: 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSA------GNEAFQ 851
Y + ++ EA + S + + +
Sbjct: 380 GIYYLCVNKISEARRYFSK-----------SS---------TMDPQFGPAWIGFAHSFAI 419
Query: 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911
G H +A+ YT A + + + L +I A + AL
Sbjct: 420 EGEHDQAISAYTTAARL----FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475
Query: 912 KAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQ 966
++ + D A + F ALL + +SN+ + NL + R+
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQN--ALLLVKKTQSNEKPWAATWANLGHAYRK 528
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 61/465 (13%), Positives = 131/465 (28%), Gaps = 75/465 (16%)
Query: 520 IQRQDSDSRMQFSFPSHSEDIGGSNFTFAASSASQASPLLSSGQEERGDLFSSRLKGDRN 579
++R +DSRMQ + +H+ +N + + A +S + S N
Sbjct: 3 VKRTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANN 62
Query: 580 SEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDP 639
+ D +E N + ++++ ++ WR + + + A + I
Sbjct: 63 TSTD--GSFLKERNAQNTDSLSREDYLRLWRHDA-----LMQQQYKCAAFVGEKVLDITG 115
Query: 640 DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV---------CVDQKIAVEA----S 686
+ A + G+ A V A
Sbjct: 116 NPNDAFWLA-QVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLG 174
Query: 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVI-------DEALFISSYSEKLLEMK- 738
+ + + Q K G + D A Y ++ L +
Sbjct: 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA--KECY-KEALMVDA 231
Query: 739 --AEALF------MLRKYEEVIQLCEQTFHFAEKNSPPL---------------DANGQS 775
EA +L EE + + + K D ++
Sbjct: 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291
Query: 776 MELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGT 835
+ SS + S L C + F R + +A + ++ +
Sbjct: 292 EDYLSSINGLEKSSDLLLC--KADTLFVRSRFIDVLAITTK------------ILEIDPY 337
Query: 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD 895
++ ++G ++ V+ HP A+ + Y + I++
Sbjct: 338 NLDVYPLH--LASLHESGEKNKLYLISNDL----VDRHPEKAVTWLAVGIYYLCVNKISE 391
Query: 896 AIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
A + + +D + A A + + ++D A S + L
Sbjct: 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 7e-11
Identities = 51/339 (15%), Positives = 92/339 (27%), Gaps = 72/339 (21%)
Query: 626 DALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ--SGSDVCVDQKIAV 683
D + ++ + + A+ D L+ + +A
Sbjct: 289 RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLAS 348
Query: 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEI--ALGV-------IDEALFISSYSEKL 734
L ++ + ++ S L+ A A+G+ I EA +S K
Sbjct: 349 -----LHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA--RRYFS-KS 399
Query: 735 LEMK---AEA-------LFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSEST 784
M A + ++++ I + P M+
Sbjct: 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY--LFLGMQ------- 450
Query: 785 KHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKS 844
+ LG + A L+ L LL
Sbjct: 451 ----------------HMQLGNILLANEYLQS------------SYALFQYDPLLLNEL- 481
Query: 845 AGNEAFQAGRHSEAVEHYTAALSC---TVESHPFAAICFCNRAAAYKALRHITDAIADCN 901
G AF A+ H+ AL T + A + N AY+ L+ AI N
Sbjct: 482 -GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540
Query: 902 LAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ L N + A +Y + A + H +A+
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 45/345 (13%), Positives = 74/345 (21%), Gaps = 90/345 (26%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
L +A T R D L+ + IDP L V GE +
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367
Query: 671 SGSD----------VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGV 720
+ + EA K+ + A I
Sbjct: 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKS------------STMDPQFGPAWIGFAH 415
Query: 721 I-------DEALFISSYSEKLLEMK---AEA-------LFMLRKYEEVIQLCEQTFHFAE 763
D+A IS+Y + L + +
Sbjct: 416 SFAIEGEHDQA--ISAY-TTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS------ 466
Query: 764 KNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER------H 817
S L + L + F ++ AI +
Sbjct: 467 -----------SYALFQYDP------LLLNELGV--VAFNKSDMQTAINHFQNALLLVKK 507
Query: 818 ESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA 877
N + L R+L + A++ L A
Sbjct: 508 TQSNEKPWAATWANLGHAYRKL-------------KMYDAAIDALNQGL----LLSTNDA 550
Query: 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922
A Y + AI + ++A+ N + A E
Sbjct: 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 1e-14
Identities = 106/696 (15%), Positives = 189/696 (27%), Gaps = 223/696 (32%)
Query: 456 MD--INDEDVEFRDTKEDHSDRGVGSEVPQDESVSGTETESFKSA--NEEIDDATDNSAE 511
MD + +++D D V + + + KS EEID +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFV-----DNFDCKDVQ-DMPKSILSKEEIDHIIMSKDA 60
Query: 512 TEASSSAGIQRQDSDSRMQFSFPSHSEDIGGSNFTFAASSAS----QASPLLSSGQEERG 567
+ M F E++ N+ F S Q S + E+R
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 568 DLFSS-RLKGDRNSEVDRGQ----------EIKQEPNLA------SAETIAAQEACEKWR 610
L++ ++ N V R Q E++ N+ S +T A + C ++
Sbjct: 118 RLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 611 LSNRAATR---MALGRMRDALSDCM-----LAVAIDPDFLRVQVRAANCHLALGEIED-- 660
+ + + + L + L IDP++ ++N L + I+
Sbjct: 176 VQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 661 ----ASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEI 716
SK + CL +V + K A + C ++L T+ ++
Sbjct: 235 RRLLKSKPYENCLLVLLNVQ-NAKA-WNAFNL--------SC-----KILL--TTRFKQV 277
Query: 717 A--LGVIDEALFISSYSEKLLEMKAEALFMLRKY--EEVIQLCEQTFHFAEKNSPPLDAN 772
L + L E +L KY L + +P
Sbjct: 278 TDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPRE----VLTTNPRR--- 329
Query: 773 GQSMELDSSESTKHVSFRL--WRCCLIFKSYFTLGRLEEAI-AALERHESGNGGKMLESL 829
S+ +ES + W+ + +L I ++L E KM + L
Sbjct: 330 -LSI---IAESIRDGLATWDNWK-------HVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 830 --------IPLA--------------GTVRELLCRKSAGNEAFQAGR------------- 854
IP V L + S + +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 855 -------HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD 907
H V+HY F + + D
Sbjct: 439 LENEYALHRSIVDHYNIPK------------TFDS--------DDLIPPYLD-------- 470
Query: 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLR-- 965
Y Y H H L + + E+ R + L D R
Sbjct: 471 -QYF---------------YSHIG--HH-LKNI--EHPERMTLF----RMVFL--DFRFL 503
Query: 966 QARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPD---------- 1015
+ ++R + A I L+ + +K Y+ + P
Sbjct: 504 EQKIRHDSTAWNASGSI-LNT-----------LQQLKF-YKPYICDNDPKYERLVNAILD 550
Query: 1016 ---KAGQSLVRSDNGD---DGLWKEIGAEVHKDAEK 1045
K ++L+ S D L E A + ++A K
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEA-IFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 5e-11
Identities = 81/594 (13%), Positives = 161/594 (27%), Gaps = 191/594 (32%)
Query: 625 RDALSDCMLAVAID------PDFLRVQVRAANCHLALGEIEDASKYFRM--CLQSGSDVC 676
+D LS A + D + + + + S R+ L S +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 677 VDQKIAVEASDGLQK-----AQKVS-ECMQRSAQLLQ-----NKTSNDAEIALGVIDEAL 725
V + VE + L+ + E Q S ++ ND ++
Sbjct: 79 VQK--FVE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--------- 125
Query: 726 FISSYS----EKLLEMKAEALFMLRKYEEVIQLCEQTFH----FAEKNSPPLDANGQSME 777
+ Y+ + L+++ +AL LR + V+ K LD
Sbjct: 126 -FAKYNVSRLQPYLKLR-QALLELRPAKNVL------IDGVLGSG-KTWVALDV------ 170
Query: 778 LDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVR 837
S + + F+ IF + L LE ML+ L+
Sbjct: 171 CLSYKVQCKMDFK------IF--WLNLKNCNSPETVLE---------MLQKLL------Y 207
Query: 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAI 897
++ ++ ++ + + A L ++S P+ L + +
Sbjct: 208 QIDPNWTSRSDHSSNIKLR--IHSIQAELRRLLKSKPYE-----------NCLL-VLLNV 253
Query: 898 ADCNLAIALDGNYLKAISRRATLYEMI-RDYDHAASDFHRLIALLTKQI--EKSNQSGVS 954
+ A + + + L + R L A T I + + +
Sbjct: 254 QNAKAWNAFNLS-----CK--IL--LTTRF----KQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 955 DRSINL-ANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHH 1013
D +L L R + E P + +I ++R
Sbjct: 301 DEVKSLLLKYLD---CRPQDLPREVLTTNPRRLSII-----------------AESIRDG 340
Query: 1014 PDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRY-DL---- 1068
DN WK H + +KL +I + VL R + L
Sbjct: 341 LA-------TWDN-----WK------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 1069 ---------------EEETRNTQ------------KKQNGSNTSRTHAYAQNYPFERSSS 1101
+ + +KQ +T + + +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 1102 R---RQWRE---VRRSYDN---SAARGD--IYS-ISFNLRIASNKRCYRPFVTI 1143
R + + +++D+ D YS I +L+ + F +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
|
| >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 4e-14
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 26/92 (28%)
Query: 976 EEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEI 1035
K++ ++ + ++ K+ R+ L+ HPDK N ++
Sbjct: 12 GSILKEV----TSVVEQAWKLPESERKKIIRRLYLKWHPDK---------NPEN------ 52
Query: 1036 GAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYD 1067
H A ++FK + L K++ D
Sbjct: 53 ----HDIANEVFKHLQNEINRL---EKQAFLD 77
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 9e-14
Identities = 41/405 (10%), Positives = 103/405 (25%), Gaps = 56/405 (13%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
+++ + AL ++ L A + PD + AL ++
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390
Query: 671 SGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSN---------------DAE 715
D Q +A+ ++ G Q + V + Q +
Sbjct: 391 LTPD----QVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 446
Query: 716 IALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANG-- 773
L V+ + ++ + L ++++ + Q + +N
Sbjct: 447 RLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506
Query: 774 -------QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER---------- 816
Q + ++ ++ L ++ + L +
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 817 --HESGNGGKMLESLIPLAGTVRELLCRKSA--------GNEAFQAGRHSEAVEHYTAAL 866
+G G + LE++ L + + + A
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAH 626
Query: 867 SCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926
T + + +AL + + A L + + AI+ + +
Sbjct: 627 GLTPAQ----VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682
Query: 927 YDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLAN----DLRQA 967
+ L +Q+ + +++ L QA
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQA 727
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 9e-13
Identities = 34/354 (9%), Positives = 84/354 (23%), Gaps = 54/354 (15%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
+++ + AL ++ L A + PD + AL ++
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHG 356
Query: 671 SGSD----------VCVDQKIAVEASDGLQKAQKVS-ECMQRSAQLLQNKTSNDAEIALG 719
D + L +A ++ + + A + + L
Sbjct: 357 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLP 416
Query: 720 VIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELD 779
V+ +A ++ + L + ++ + Q + L
Sbjct: 417 VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ-----------------THGLT 459
Query: 780 SSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVREL 839
++ S L +++ + L + L
Sbjct: 460 PAQVVAIASHDG--------GKQALETVQQLLPVLCQ------------AHGLTPDQVVA 499
Query: 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIAD 899
+ S + A T P + + +AL + +
Sbjct: 500 IA--SNIGGKQALATVQRLLPVLCQAHGLT----PDQVVAIASNGGGKQALETVQRLLPV 553
Query: 900 CNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGV 953
A L + + AI+ + + + L Q+ +
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIG 607
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 3e-11
Identities = 46/398 (11%), Positives = 100/398 (25%), Gaps = 73/398 (18%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ 645
Q P+ A +++ + AL ++ L A + PD +
Sbjct: 251 QAHGLPPDQVVA-------------IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAI 297
Query: 646 VRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL 705
AL ++ DQ +A+ + DG ++A
Sbjct: 298 ASHGGGKQALETVQRLLPVLCQAHGLTP----DQVVAIASHDGGKQAL------------ 341
Query: 706 LQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765
+ L V+ +A ++ + L + ++ + Q
Sbjct: 342 ------ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395
Query: 766 SPPLDANGQSMELDSSE------------STKHVSFRLWRCCLIFKSYFTLGRLEEAIAA 813
+ +NG L++ + + V L ++ +
Sbjct: 396 VVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG----KQALETVQRLLPV 451
Query: 814 LERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873
L + L P V + + + A T +
Sbjct: 452 LCQT---------HGLTP--AQVVAIASH---DGGKQALETVQQLLPVLCQAHGLTPDQ- 496
Query: 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933
+ + +AL + + A L + + AI+ + +
Sbjct: 497 ---VVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 553
Query: 934 FHRLIALLTKQIEKSNQSGVS----DRSINLANDLRQA 967
+ L Q+ +G + L L QA
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 591
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 4e-11
Identities = 33/353 (9%), Positives = 76/353 (21%), Gaps = 65/353 (18%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
+++ + AL ++ L + P + AL ++
Sbjct: 432 IASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL----- 486
Query: 671 SGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY 730
Q + +V T L +A ++
Sbjct: 487 -------CQAHGL-------TPDQVVAIASNIGGKQALATVQRLLPVL---CQAHGLTPD 529
Query: 731 SEKLLEMKAEALFMLRKYEEVIQLCEQ------TFHFAEKNSP-PLDANG---------- 773
+ L + ++ + Q A ++ A
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 589
Query: 774 QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLA 833
Q+ L + S L ++ + L +
Sbjct: 590 QAHGLTQVQVVAIAS----NIGG----KQALETVQRLLPVLCQ--------------AHG 627
Query: 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHI 893
T +++ S + A T P + + +AL +
Sbjct: 628 LTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASNGGGKQALETV 683
Query: 894 TDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946
+ A L + AI+ + + + L Q+
Sbjct: 684 QRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV 736
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 1e-09
Identities = 19/172 (11%), Positives = 43/172 (25%), Gaps = 24/172 (13%)
Query: 801 YFTLGRLEEAIAALER------------HESGNGGKMLESLIPLAGTVRELLCRK----- 843
L ++ + L + + G + LE++ L + +
Sbjct: 236 KQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVV 295
Query: 844 ---SAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADC 900
S G + A P + + +AL + +
Sbjct: 296 AIASHGGGKQALETVQRLLPVLCQAH----GLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 901 NLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSG 952
A L + + AI+ + + + L Q+ +G
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 403
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 1e-09
Identities = 43/398 (10%), Positives = 96/398 (24%), Gaps = 73/398 (18%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ 645
Q P A +++ + AL M+ L A + PD +
Sbjct: 217 QAHGLTPAQVVA-------------IASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAI 263
Query: 646 VRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL 705
AL ++ D V L+ Q++ + ++ L
Sbjct: 264 ASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGL 323
Query: 706 -------LQNKTS-----NDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQ 753
+ + + L V+ +A ++ + L + ++
Sbjct: 324 TPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 383
Query: 754 LCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAA 813
+ Q + +NG L ++ +
Sbjct: 384 VLCQAHGLTPDQVVAIASNGGKQA--------------------------LETVQRLLPV 417
Query: 814 LERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873
L + + + ++ G + L + T
Sbjct: 418 LCQAHGLTPDQ-VVAIASHDGGKQAL-------------ETVQRLLPVLCQTHGLT---- 459
Query: 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933
P + + +AL + + A L + + AI+ + +
Sbjct: 460 PAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPV 519
Query: 934 FHRLIALLTKQIEKSNQSGVS----DRSINLANDLRQA 967
+ L Q+ +G + L L QA
Sbjct: 520 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 557
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 2e-09
Identities = 33/336 (9%), Positives = 83/336 (24%), Gaps = 65/336 (19%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
+++ + AL ++ L A + PD + AL ++
Sbjct: 500 IASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 559
Query: 671 SGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY 730
D Q +A+ ++ G ++A + + L V+ +A ++
Sbjct: 560 LTPD----QVVAIASNGGGKQALE------------------TVQRLLPVLCQAHGLTQV 597
Query: 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790
+ L + ++ + Q + ++
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG--------------- 642
Query: 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850
L ++ + L + T +++ S G
Sbjct: 643 ----------KQALETVQRLLPVLCQ--------------AHGLTPDQVVAIASNGGGKQ 678
Query: 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
+ A T + + +AL + + A L +
Sbjct: 679 ALETVQRLLPVLCQAHGLT----QEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734
Query: 911 LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946
+ AI+ + + + L Q+
Sbjct: 735 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVV 770
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 3e-09
Identities = 36/357 (10%), Positives = 88/357 (24%), Gaps = 74/357 (20%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFR--MC 668
+++ + AL ++ L A + P + AL ++
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 669 LQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS 728
L DQ +A+ ++ G ++A + + L V+ +A ++
Sbjct: 255 LPP------DQVVAIASNIGGKQALE------------------TVQRLLPVLCQAHGLT 290
Query: 729 SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVS 788
+ L + ++ + Q + ++
Sbjct: 291 PDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG------------- 337
Query: 789 FRLWRCCLIFKSYFTLGRLEEAIAALER------------HESGNGGKMLESLIPLAGTV 836
L ++ + L + +G G + LE++ L +
Sbjct: 338 ------------KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 837 RELLCRKSAGNEAF-------QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA 889
+ A + A T P + + +A
Sbjct: 386 CQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASHDGGKQA 441
Query: 890 LRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946
L + + L + AI+ + + + L Q+
Sbjct: 442 LETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVV 498
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 5e-09
Identities = 38/379 (10%), Positives = 91/379 (24%), Gaps = 78/379 (20%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ 645
Q P+ A +++ + AL ++ L A + PD +
Sbjct: 522 QAHGLTPDQVVA-------------IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 568
Query: 646 VRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL 705
AL ++ Q +A+ ++ G ++A +
Sbjct: 569 ASNGGGKQALETVQRLLPVLCQAHGLTQV----QVVAIASNIGGKQALE----------- 613
Query: 706 LQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765
+ L V+ +A ++ + L + ++ + Q
Sbjct: 614 -------TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQ-------- 658
Query: 766 SPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKM 825
+ L + S L ++ + L +
Sbjct: 659 ---------AHGLTPDQVVAIASNGG--------GKQALETVQRLLPVLC--------QA 693
Query: 826 LESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAA 885
L +++ S + A T P + +
Sbjct: 694 HG-LTQ-----EQVVAIASNNGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASNGG 743
Query: 886 AYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945
+AL + + A L + AI+ + + + L Q+
Sbjct: 744 GKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQV 803
Query: 946 EKSNQSGVSDRSINLANDL 964
+ +++ L
Sbjct: 804 VAIASNIGGKQALETVQRL 822
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 9e-09
Identities = 19/171 (11%), Positives = 42/171 (24%), Gaps = 22/171 (12%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860
L ++ + L + L P +++ S +
Sbjct: 202 KQALETVQRLLPVLCQ---------AHGLTP-----AQVVAIASHDGGKQALETMQRLLP 247
Query: 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920
A P + + +AL + + A L + + AI+
Sbjct: 248 VLCQAHGLP----PDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGG 303
Query: 921 YEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSIN----LANDLRQA 967
+ + + L Q+ +++ L L QA
Sbjct: 304 KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQA 354
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 7e-08
Identities = 41/364 (11%), Positives = 93/364 (25%), Gaps = 51/364 (14%)
Query: 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668
+++ + AL ++ L A + + AL ++
Sbjct: 566 VAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQA 625
Query: 669 LQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS 728
V L+ Q++ + ++ L T + A+ +
Sbjct: 626 HGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGL----TPDQVV--------AIASN 673
Query: 729 SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP-----------LDANGQSME 777
++ LE L + L Q A ++ L Q+
Sbjct: 674 GGGKQALETVQRLL---PVLCQAHGL-TQEQVVAIASNNGGKQALETVQRLLPVLCQAHG 729
Query: 778 LDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER------------HESGNGGKM 825
L + S L ++ + L + + G +
Sbjct: 730 LTPDQVVAIAS--------NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQA 781
Query: 826 LESLIPLAGTVRELLCRKSAGNEA-FQAGRHSEAVEHYTAALSCTVESH---PFAAICFC 881
LE++ L + + A A +A+E L ++H +
Sbjct: 782 LETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIA 841
Query: 882 NRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941
+ +AL + + L + + AI+ + + + L
Sbjct: 842 SNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 901
Query: 942 TKQI 945
Q+
Sbjct: 902 LDQV 905
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 1e-07
Identities = 17/128 (13%), Positives = 31/128 (24%), Gaps = 8/128 (6%)
Query: 844 SAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLA 903
S + A T P + + +AL + + A
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHGLT----PAQVVAIASHDGGKQALETMQRLLPVLCQA 252
Query: 904 IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVS----DRSIN 959
L + + AI+ + + + L Q+ G +
Sbjct: 253 HGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQR 312
Query: 960 LANDLRQA 967
L L QA
Sbjct: 313 LLPVLCQA 320
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 2e-13
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 23/142 (16%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
+ Y +LGV + S +I++ ++K AL+ HPDK N ++ +A
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDK---------NPNN-----------PNAH 61
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQ 1104
F I AY VL D R +YD E + + + Y +
Sbjct: 62 GDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDP---EI 118
Query: 1105 WREVRRSYDNSAARGDIYSISF 1126
RR +D + G+++ ++F
Sbjct: 119 ITLERREFDAAVNSGELWFVNF 140
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 9e-13
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 13/113 (11%)
Query: 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA-------------ICFCNRAAAY 887
RK GN F+ + EA++ Y A++ + F C N AA
Sbjct: 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACL 240
Query: 888 KALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
L+ +AI CN+ + + KA+ RR + D A DF +
Sbjct: 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 2e-12
Identities = 39/218 (17%), Positives = 81/218 (37%), Gaps = 21/218 (9%)
Query: 800 SYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAV 859
G+L+EA+ + I ++ T + GN + A+
Sbjct: 52 VLQQQGKLQEALMHYKE------------AIRISPTFADAYSNM--GNTLKEMQDVQGAL 97
Query: 860 EHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919
+ YT A+ +P A N A+ +K +I +AIA A+ L ++ A A
Sbjct: 98 QCYTRAIQI----NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153
Query: 920 LYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVS---DRSINLANDLRQARMRLTAVEE 976
+++ D+ +L++++ Q+EK+ V L++ R+A
Sbjct: 154 CLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLC 213
Query: 977 EARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHP 1014
+ ++ + +S ++ GY + +HP
Sbjct: 214 LDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHP 251
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 8e-12
Identities = 40/327 (12%), Positives = 85/327 (25%), Gaps = 25/327 (7%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
N + G EAV Y AL P A N A+ + + +A+ AI
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLR 965
+ + A S + ++D A + R I + +D NLA+ +
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---------NPAFADAHSNLASIHK 122
Query: 966 QARMRLTAVEEEARKDIPLD------MYLILGVESSVSVADIKRGYRKAALRHHPDKAGQ 1019
+ + R + L + V K + D+ +
Sbjct: 123 DSG-NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
Query: 1020 SLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQ 1079
+ + S + + + K + + + + + +
Sbjct: 182 NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG 241
Query: 1080 NGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYDNSAARGDIYSISFNLRIASNKRCYRP 1139
S+ H + + Y S G + +++ + +
Sbjct: 242 YVSSDFGNHPTSHLMQ-SIPGMHNPDKFEVFCYALSPDDGTNF----RVKVMAEANHFID 296
Query: 1140 FVTIREFMACACQWRYQIVESQTEDCG 1166
I A + + G
Sbjct: 297 LSQIPCNGKAADRIHQDGIHILVNMNG 323
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 1e-10
Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860
G +EEA+ + + P L + Q G+ EA+
Sbjct: 19 KREQGNIEEAVRLYRK---------ALEVFPEFAAAHSNL-----ASVLQQQGKLQEALM 64
Query: 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920
HY A+ P A + N K ++ + A+ AI ++ + A S A++
Sbjct: 65 HYKEAIRI----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120
Query: 921 YEMIRDYDHAASDFHRLIAL 940
++ + A + + + L
Sbjct: 121 HKDSGNIPEAIASYRTALKL 140
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 23/206 (11%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
L+N A + G + +A+ A+ + P+F A+ G++++A +++ ++
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 671 SGSD----------VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQN-----KTSNDAE 715
+ + A LQ + + A N K S +
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGA---LQCYTRAIQINPAFADAHSNLASIHKDSGNIP 128
Query: 716 IALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQ----TFHFAEKNSPPLDA 771
A+ AL + A L ++ + + + ++ EKN P
Sbjct: 129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 188
Query: 772 NGQSMELDSSEST-KHVSFRLWRCCL 796
SM S K ++ R CL
Sbjct: 189 PHHSMLYPLSHGFRKAIAERHGNLCL 214
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 6e-04
Identities = 13/69 (18%), Positives = 25/69 (36%)
Query: 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAA 931
S P A N A + +I +A+ A+ + + A S A++ + A
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63
Query: 932 SDFHRLIAL 940
+ I +
Sbjct: 64 MHYKEAIRI 72
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 4e-12
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G +QAG+ +A + + A + A F A ++L A+ +
Sbjct: 25 GFNQYQAGKWDDAQKIFQAL----CMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+D N + A + + D D A S F+ AL
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-09
Identities = 20/85 (23%), Positives = 31/85 (36%)
Query: 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672
A R +LG AL +D + R AA CHL LG+++ A F
Sbjct: 57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116
Query: 673 SDVCVDQKIAVEASDGLQKAQKVSE 697
+ + +A A L+ +
Sbjct: 117 AAQPAHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 5e-06
Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 21/130 (16%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860
+ G+ ++A + L L G G + +A++
Sbjct: 28 QYQAGKWDDAQKIFQA------------LCMLDHYDARYFLGL--GACRQSLGLYEQALQ 73
Query: 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN---YLKAISRR 917
Y+ + A + L + A + A AL + +R
Sbjct: 74 SYSYGA----LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129
Query: 918 ATLYEMIRDY 927
+ E +
Sbjct: 130 GAMLEAVTAR 139
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 9e-04
Identities = 6/59 (10%), Positives = 12/59 (20%)
Query: 882 NRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
DA LD + + + Y+ A + +
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM 81
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 4e-11
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 19/145 (13%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860
Y + A + + +A ++ G AFQ G A +
Sbjct: 169 YGLTNNSKLAERFFSQA------------LSIAPEDPFVMHEV--GVVAFQNGEWKTAEK 214
Query: 861 HYTAALSC-----TVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915
+ AL + N + L+ +A+ A+ L S
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYS 274
Query: 916 RRATLYEMIRDYDHAASDFHRLIAL 940
++ ++ ++++A FH + L
Sbjct: 275 AIGYIHSLMGNFENAVDYFHTALGL 299
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 7e-11
Identities = 33/348 (9%), Positives = 92/348 (26%), Gaps = 63/348 (18%)
Query: 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668
+ + A + + + DP + L + +
Sbjct: 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82
Query: 669 LQSGSDV----CVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVI--- 721
+ + K + + ++ L KT A IA G
Sbjct: 83 VDLYPSNPVSWFA---VGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAV 137
Query: 722 ----DEALFISSYSEKLLEMK---AEA-------LFMLRKYEEVIQLCEQTFHFAEKNSP 767
D+A +++Y ++ + + + F+
Sbjct: 138 ESEHDQA--MAAYF-TAAQLMKGCHLPMLYIGLEYGLTNNSKLAER------FFS----- 183
Query: 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLE 827
Q++ + + + + F G + A + ++
Sbjct: 184 ------QALSIAPEDP------FVMHEVGV--VAFQNGEWKTAEKWFLD-----ALEKIK 224
Query: 828 SLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAY 887
++ + + G+ + +++EA++++ AL P A + +
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL----VLIPQNASTYSAIGYIH 280
Query: 888 KALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFH 935
+ + +A+ + A+ L + +++ EM A
Sbjct: 281 SLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 30/282 (10%), Positives = 68/282 (24%), Gaps = 61/282 (21%)
Query: 697 ECMQRSAQLLQNK-----TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEV 751
+ +Q + ++ + + D ++ + + + L + L L K E+
Sbjct: 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANEL 75
Query: 752 IQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRL-EEA 810
L H P + S + Y +G E A
Sbjct: 76 FYL----SHKLVDLYP-----------SNPVS----------WFAVGCYYLMVGHKNEHA 110
Query: 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSA------GNEAFQAGRHSEAVEHYTA 864
L + + L + G+ H +A+ Y
Sbjct: 111 RRYLSK-----------AT---------TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT 150
Query: 865 ALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924
A + Y + A + A+++ + +
Sbjct: 151 AAQL----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206
Query: 925 RDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQ 966
++ A F + + + NL + R+
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 37/339 (10%), Positives = 81/339 (23%), Gaps = 82/339 (24%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVR 647
++++P AS L T + L + + V + P
Sbjct: 49 MEKDPFHASC-------------LPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95
Query: 648 AANCHLALGE-IEDASKYFRMCLQSGSDVCVDQK---------IAVEASDGLQKA----Q 693
+L +G E A +Y +++ + +A
Sbjct: 96 VGCYYLMVGHKNEHARRYLSKATT------LEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149
Query: 694 KVSECMQRSA--------QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML 745
++ M+ + S AE +AL I+ ++ F
Sbjct: 150 TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF---SQALSIAPEDPFVMHEVGVVAFQN 206
Query: 746 RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFK--SYFT 803
+++ + + + + W L
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDK------------------WEPLLNNLGHVCRK 248
Query: 804 LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYT 863
L + EA+ + LIP + + G G AV+++
Sbjct: 249 LKKYAEALDYHRQ---------ALVLIPQNASTYSAI-----GYIHSLMGNFENAVDYFH 294
Query: 864 AALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
AL + ++A ++
Sbjct: 295 TALGL----RRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 22/228 (9%), Positives = 55/228 (24%), Gaps = 56/228 (24%)
Query: 720 VIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELD 779
VI E++ + ++ AE + ++ +L + P + + +
Sbjct: 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSV----VMEKDP---FHASCLPVH 62
Query: 780 SSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVREL 839
+ L + E K+++
Sbjct: 63 IG------------------TLVELNKANELFYLSH--------KLVD------------ 84
Query: 840 LCRKSA------GNEAFQAGR-HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH 892
L + G G + A + + A + ++
Sbjct: 85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT----TLEKTYGPAWIAYGHSFAVESE 140
Query: 893 ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
A+A A L + Y + + A F + +++
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 28/209 (13%), Positives = 57/209 (27%), Gaps = 52/209 (24%)
Query: 738 KAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLI 797
A+ LF Y E I++ + + S ++
Sbjct: 9 YADFLFKNNNYAEAIEVFNK-----------------LEAKKYN------SPYIYN--RR 43
Query: 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSA------GNEAFQ 851
Y+ L + + A +E + + + G +
Sbjct: 44 AVCYYELAKYDLAQKDIETYF-----SKVN-ATK-----------AKSADFEYYGKILMK 86
Query: 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911
G+ S A++ Y AA+ + + + + + AI I
Sbjct: 87 KGQDSLAIQQYQAAV----DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP 142
Query: 912 KAISRRATLYEMIRDYDHAASDFHRLIAL 940
K Y ++Y A S F +++ L
Sbjct: 143 KVFYELGQAYYYNKEYVKADSSFVKVLEL 171
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 18/154 (11%), Positives = 37/154 (24%), Gaps = 23/154 (14%)
Query: 800 SYFTLGRLEEAIAALERHESGNGGKMLESLIP-LAGTVRELLCRKSAGNEAFQAGRHSEA 858
G+ AI + ++ ++ G+ + G A
Sbjct: 83 ILMKKGQDSLAIQQYQ--------AAVD-RDTTRLDMYGQI------GSYFYNKGNFPLA 127
Query: 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918
+++ + F AY + A + + L N RA
Sbjct: 128 IQYMEKQI----RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183
Query: 919 TLY---EMIRDYDHAASDFHRLIALLTKQIEKSN 949
+ A + +LI + K
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 43/335 (12%), Positives = 75/335 (22%), Gaps = 91/335 (27%)
Query: 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672
A +A+ A + + R A C+ L + + A K
Sbjct: 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI------- 60
Query: 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSND------AEIALGVIDEALF 726
+ S D + G A
Sbjct: 61 --------------ETYFSKVN-----------ATKAKSADFEYYGKILMKKGQDSLA-- 93
Query: 727 ISSYSEKLLEMK----------AEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSM 776
I Y + ++ + + IQ E+ +
Sbjct: 94 IQQY-QAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK-----------------QI 135
Query: 777 ELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV 836
+++ + L + Y+ +A ++ K+LE L P
Sbjct: 136 RPTTTDPKVF--YELGQA------YYYNKEYVKADSSFV--------KVLE-LKP--NIY 176
Query: 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALS----CTVESHPFAAICFCNRAAAYKALRH 892
L R A + A +Y + + A Y R
Sbjct: 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236
Query: 893 ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927
A A +ALD KAI E +
Sbjct: 237 KVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 41/157 (26%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSA------GNEAFQAGR 854
++ G AI +E K + G +
Sbjct: 118 FYNKGNFPLAIQYME--------KQIR-PTT-----------TDPKVFYELGQAYYYNKE 157
Query: 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD---AIADCNLAIALDG--- 908
+ +A + L E P I + RA A A T A I +
Sbjct: 158 YVKADSSFVKVL----ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG 213
Query: 909 -----NYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
++A A Y + RD A + + ++AL
Sbjct: 214 AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 8e-11
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
+ + GR EA + + AA Y+ A +A A
Sbjct: 43 AYDFYNKGRIEEAEVFFRFLC----IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
L N + ++ A F +I
Sbjct: 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 7e-08
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672
AA + + A +A A+ + C L L A + F + +Q
Sbjct: 75 GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134
Query: 673 SD 674
+D
Sbjct: 135 ND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 16/127 (12%), Positives = 32/127 (25%), Gaps = 21/127 (16%)
Query: 800 SYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAV 859
++ GR+EEA L + + + +A
Sbjct: 45 DFYNKGRIEEAEVFFRF------------LCIYDFYNVDYIMGL--AAIYQIKEQFQQAA 90
Query: 860 EHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919
+ Y A + L+ A L I + + + +A
Sbjct: 91 DLYAVAF----ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND--EKLKIKAQ 144
Query: 920 LY-EMIR 925
Y + I+
Sbjct: 145 SYLDAIQ 151
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 14/136 (10%), Positives = 25/136 (18%), Gaps = 18/136 (13%)
Query: 805 GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTA 864
+ L P +L + G +
Sbjct: 3 ADGPRELLQLRA---------AVRHRPQDFVAWLML-----ADAELGMGDTTAGEMAVQR 48
Query: 865 ALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924
L+ HP + +A A + E
Sbjct: 49 GLAL----HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA 104
Query: 925 RDYDHAASDFHRLIAL 940
+ AA+ + R L
Sbjct: 105 GQAEAAAAAYTRAHQL 120
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 20/146 (13%), Positives = 37/146 (25%), Gaps = 18/146 (12%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860
+G A++R + L E + R G + RH+EA
Sbjct: 33 ELGMGDTTAGEMAVQR------------GLALHPGHPEAVARL--GRVRWTQQRHAEAAV 78
Query: 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920
A P A + A A A L ++
Sbjct: 79 LLQQASDA----APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW 134
Query: 921 YEMIRDYDHAASDFHRLIALLTKQIE 946
+ D+ ++ A + + +
Sbjct: 135 RRRLCDWRALDVLSAQVRAAVAQGVG 160
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 5e-09
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911
+ AA+ P + + A A + T +AL +
Sbjct: 2 TADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP 57
Query: 912 KAISRRATLYEMIRDYDHAASDFHRLIAL 940
+A++R + + + AA +
Sbjct: 58 EAVARLGRVRWTQQRHAEAAVLLQQASDA 86
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
++ R R +A A P+ + + + G+ E A+ + Q
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 8/83 (9%), Positives = 17/83 (20%), Gaps = 13/83 (15%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVR 647
++ P A A + +G +A+ P R
Sbjct: 16 VRHRPQDFVA-------------WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 648 AANCHLALGEIEDASKYFRMCLQ 670
+A+ +
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASD 85
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 17/161 (10%), Positives = 38/161 (23%), Gaps = 12/161 (7%)
Query: 622 GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD------- 674
L AV P + A+ L +G+ + L
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 675 VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQN-----KTSNDAEIALGVIDEALFISS 729
+ + ++ Q+ S+ + + + AE A A +
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 730 YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770
+ L + + L Q + ++
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G A A++ ++A P + ICF N Y L+++T+A +I
Sbjct: 13 GVLAADKKDWKGALDAFSAVQD------PHSRICF-NIGCMYTILKNMTEAEKAFTRSIN 65
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941
D + A +R LY YD A D + L
Sbjct: 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 17/99 (17%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCT------------VESHPFAAICFCNRAAAYKALRHI 893
G +Q ++ A++ AL ++ FA N A Y
Sbjct: 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137
Query: 894 TDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAAS 932
A LA ++ R + + + +
Sbjct: 138 KKAEEQLALATSMKSEP-----RHSKIDKAMECVWKQKL 171
|
| >1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 3e-10
Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 26/86 (30%)
Query: 985 DMYLILGV--ESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKD 1042
+ +L + + +++ Y++ +L HPDK G
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-----------------------S 48
Query: 1043 AEKLFKMIAEAYAVLSDPSKRSRYDL 1068
+ + + R +L
Sbjct: 49 HAL-MQELNSLWGTFKTEVYNLRMNL 73
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 7e-10
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA-----------AICFCNRAA 885
+ K G F+ G++ +AV Y +S + + F N A
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325
Query: 886 AYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
Y LR T A+ C+ A+ LD K + RR ++ +++ A DF +++ +
Sbjct: 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 21/150 (14%)
Query: 800 SYFTLGRLEEAIAALER--------HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ 851
S+ A+A+L + G+ A + L +S
Sbjct: 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSV-------NLQADVDIDDLNVQSEDFFFAA 150
Query: 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911
+ E AAL E +P A + Y + A A+ A+ L +
Sbjct: 151 PNEYRECRTLLHAAL----EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 912 KAISRR-ATLYEMIRDYDHAASDFHRLIAL 940
+ ++ ATL R A ++R + +
Sbjct: 207 QLWNKLGATLANGNR-PQEALDAYNRALDI 235
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G + +EA + A ++ P + + AI N A
Sbjct: 28 GLSMLKLANLAEAALAFEAV----CQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
LD + + A + + + A + +
Sbjct: 84 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 118
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 45/366 (12%), Positives = 82/366 (22%), Gaps = 96/366 (26%)
Query: 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672
+ + L + +A P+ + A
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85
Query: 673 SD----------VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVID 722
++ A A L+ L ++ ++ +
Sbjct: 86 PKDIAVHAALAVSHTNEHNANAALASLRAW-------------LLSQ-PQYEQLGSVNLQ 131
Query: 723 EALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782
+ I + + + +Y E L E N P DA
Sbjct: 132 ADVDIDDLNVQSEDF---FFAAPNEYRECRTLLHAA---LEMN--PNDAQLH-------- 175
Query: 783 STKHVSFRLWRCCL--IFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVR--- 837
L ++ + A A L R A +R
Sbjct: 176 -----------ASLGVLYNL---SNNYDSAAANLRR----------------AVELRPDD 205
Query: 838 -ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896
+L + G R EA++ Y AL + +P N A +Y + A
Sbjct: 206 AQLWNKL--GATLANGNRPQEALDAYNRAL----DINPGYVRVMYNMAVSYSNMSQYDLA 259
Query: 897 IADCNLAIALDGNYLKAI-------------SRRATLYEMIRDYDHAASDFHRLIALLTK 943
AI + R L M R D + + + K
Sbjct: 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR-PDLVELTYAQNVEPFAK 318
Query: 944 QIEKSN 949
+ +
Sbjct: 319 EFGLQS 324
|
| >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 7e-10
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 17/88 (19%)
Query: 984 LDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHK 1041
+D + + G+ + + + ++ ++HPDK
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASG---------------SQAEQL 45
Query: 1042 DAEKLFKMIAEAYAVLSDPSKRSRYDLE 1069
A + I +A+ L P R+ Y L
Sbjct: 46 AAVQQSATINQAWQTLRHPLMRAEYLLS 73
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 13/99 (13%), Positives = 29/99 (29%)
Query: 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCN 901
+ + + L+ + A R Y +L A D +
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 902 LAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
A+A+ + + + ++D A F ++ L
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 22/137 (16%), Positives = 35/137 (25%), Gaps = 14/137 (10%)
Query: 804 LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYT 863
+ E +A +E ++L S +LL + G G + A ++
Sbjct: 18 TLQQEVILARME--------QILASRALTDDERAQLLYER--GVLYDSLGLRALARNDFS 67
Query: 864 AALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEM 923
AL P F + A + + LD Y A R
Sbjct: 68 QAL----AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123
Query: 924 IRDYDHAASDFHRLIAL 940
A D
Sbjct: 124 GGRDKLAQDDLLAFYQD 140
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 34/187 (18%), Positives = 42/187 (22%), Gaps = 42/187 (22%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSA------GNEAFQAGR 854
Y +LG A + L + P G QAG
Sbjct: 53 YDSLGLRALARNDFS--------QALA-IRP-----------DMPEVFNYLGIYLTQAGN 92
Query: 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914
A E + + L E P NR A A D D N
Sbjct: 93 FDAAYEAFDSVL----ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148
Query: 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAV 974
L E D A + K+ N L N Q M
Sbjct: 149 LWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVE-----FYLGNISEQTLM----- 197
Query: 975 EEEARKD 981
E + D
Sbjct: 198 -ERLKAD 203
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 15/156 (9%), Positives = 33/156 (21%), Gaps = 26/156 (16%)
Query: 801 YFTLGRLEEAIAALERHES------------GNGGKML---ESLIPLAGTVRELLCRKSA 845
+ GR + A L + L ++ L + +
Sbjct: 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 180
Query: 846 GNEA-------FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIA 898
N + T + Y +L + A A
Sbjct: 181 WNIVEFYLGNISEQTLMERLKADATDNT----SLAEHLSETNFYLGKYYLSLGDLDSATA 236
Query: 899 DCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDF 934
LA+A + + ++ ++
Sbjct: 237 LFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 9e-10
Identities = 20/150 (13%), Positives = 40/150 (26%), Gaps = 19/150 (12%)
Query: 800 SYFTLGRLEEAIAALER--------HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ 851
S+ +A L + L + R L
Sbjct: 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL-------GSLLS 193
Query: 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911
E E + AA+ ++ C + A+ A+++ N
Sbjct: 194 DSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251
Query: 912 KAISRR-ATLYEMIRDYDHAASDFHRLIAL 940
++ ATL + + A + + R + L
Sbjct: 252 LLWNKLGATLANGNQ-SEEAVAAYRRALEL 280
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 16/122 (13%), Positives = 27/122 (22%), Gaps = 4/122 (3%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G Q G AV + AA+ + P + AI+ +
Sbjct: 71 GLRRLQEGDLPNAVLLFEAAV----QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 126
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLR 965
L + A+ A + A + + L R
Sbjct: 127 LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186
Query: 966 QA 967
Sbjct: 187 IL 188
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 48/348 (13%), Positives = 80/348 (22%), Gaps = 107/348 (30%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ 645
++Q+P A W+ T+ + A+S + + PD
Sbjct: 89 AAVQQDPKHMEA-----------WQ--YLGTTQAENEQELLAISALRRCLELKPDNQTAL 135
Query: 646 VRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL 705
+ A A + R L+ A L
Sbjct: 136 MALAVSFTNESLQRQACEILRDWLRYTPA---------------------------YAHL 168
Query: 706 LQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765
+ LG L +L + EV +L +
Sbjct: 169 VTPAEEGAGGAGLGPSKRIL--------------GSLLSDSLFLEVKELFLAA---VRLD 211
Query: 766 SPPLDANGQSMELDSSESTKHVSFRLWRCCL--IFKSYFTLGRLEEAIAALERHESGNGG 823
+D + Q C L +F G ++A+
Sbjct: 212 PTSIDPDVQ-------------------CGLGVLFNL---SGEYDKAVDCFTA------- 242
Query: 824 KMLESLIPLAGTVR----ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAIC 879
A +VR L + G + EAV Y AL E P
Sbjct: 243 ---------ALSVRPNDYLLWNKL--GATLANGNQSEEAVAAYRRAL----ELQPGYIRS 287
Query: 880 FCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927
N + L +A+ A+ + + E I
Sbjct: 288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST 335
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAAL------------SCTVESHPFAAICFCNRAAAYKAL 890
K+ GN F++ A++ YT L + + P A C N A +
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
A+ C A+ +D + KA+ RRA ++ +++YD A +D + +
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 15/120 (12%)
Query: 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS------------CTVESHPFAAICF 880
+V E+L + + A +AG++ +AV ++ ++ ++ ++
Sbjct: 1 GQSVDEMLQK---VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLA 57
Query: 881 CNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
A AYK R+ A + N + + A + A + +++ L
Sbjct: 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 4e-09
Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 29/210 (13%)
Query: 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRL 791
+++L+ K A + + + QT N + + +SE + ++ L
Sbjct: 5 DEMLQ-KVSAAIEAGQNGQAVSYFRQT---IALNIDRTEMYYWTNVDKNSEISSKLATEL 60
Query: 792 WRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ 851
+Y ++A + ++L+ P E
Sbjct: 61 ------ALAYKKNRNYDKAYLFYK--------ELLQ-KAPNNVDCLEAC-----AEMQVC 100
Query: 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAY-KALRHITDAIADCNLAIALDGNY 910
G+ +A+ Y L + Y + ++
Sbjct: 101 RGQEKDALRMYEKIL----QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156
Query: 911 LKAISRRATLYEMIRDYDHAASDFHRLIAL 940
A R Y+ A + ++I
Sbjct: 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR 186
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 17/173 (9%), Positives = 41/173 (23%), Gaps = 24/173 (13%)
Query: 588 IKQEPNLASA---ETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRV 644
I + + + A A + P+ +
Sbjct: 31 IALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDC 90
Query: 645 QVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQ 704
A + G+ +DA + + LQ +D + A+ L
Sbjct: 91 LEACAEMQVCRGQEKDALRMYEKILQLEAD-------NLAANIFL-------------GN 130
Query: 705 LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQ 757
+ + L + L + + + +YE+ ++
Sbjct: 131 YYYLTAEQEKK-KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 31/221 (14%), Positives = 64/221 (28%), Gaps = 38/221 (17%)
Query: 800 SYFTLGRLEEAIAALER---------HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850
SY ++A AL+ + N ++ + + +
Sbjct: 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201
Query: 851 QA-----------------------GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAY 887
+A G + A++ + AAL+ P + A
Sbjct: 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV----RPEDYSLWNRLGATL 257
Query: 888 KALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947
+A+ A+ + ++++ + Y A S+F ++L K +
Sbjct: 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317
Query: 948 SNQSGVSDRSINLANDLRQARMRLTAVEE-EARKDIPLDMY 987
S N+ LR A + E +A LD+
Sbjct: 318 QQVPH-PAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 33/234 (14%), Positives = 55/234 (23%), Gaps = 43/234 (18%)
Query: 711 SNDAEIALGVIDEAL-FISSYSEKLLEMKAEA---LFMLRKYEEVIQLCEQTFHFAEKNS 766
+ + E A ++ F + EM + + + E+ ++F +N
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN- 60
Query: 767 PPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML 826
P D G E G L I +E
Sbjct: 61 PFKDWPGAFEEG--------------------LKRLKEGDLPVTILFMEA---------- 90
Query: 827 ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAA 886
I E G + A+ L E P A +
Sbjct: 91 --AILQDPGDAEAWQFL--GITQAENENEQAAIVALQRCL----ELQPNNLKALMALAVS 142
Query: 887 YKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
Y H DA I + Y + + + R + D L +
Sbjct: 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 48/359 (13%), Positives = 89/359 (24%), Gaps = 85/359 (23%)
Query: 578 RNSEVDRGQEIKQEPNLASAETIAAQEACEKWR----LSNRAATRMALGRMRDALSDCML 633
R + + QE + + ++++E ++ R+ G + +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEA 90
Query: 634 AVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD----------VCVDQKIAV 683
A+ DP + A + CL+ + +
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150
Query: 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALF 743
+A + L+ ++ + S L +++
Sbjct: 151 DACEALKNW-------------IKQN-PKYK--------YLVKNKKGSPGLTRRMSKSPV 188
Query: 744 MLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT 803
E V +L + A + D + + +
Sbjct: 189 DSSVLEGVKELYLE----AAHQNG-----------DMIDPDLQTGLGV--------LFHL 225
Query: 804 LGRLEEAIAALERHESGNGGKMLESLIPLAGTVR----ELLCRKSAGNEAFQAGRHSEAV 859
G AI A A TVR L R G R EAV
Sbjct: 226 SGEFNRAIDAFNA----------------ALTVRPEDYSLWNRL--GATLANGDRSEEAV 267
Query: 860 EHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918
E YT AL E P N + L +A+++ A++L
Sbjct: 268 EAYTRAL----EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
+ G + +A E +T A+ E + AI + N A ++ + A+A + A+
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAI----EENKEDAIPYINFANLLSSVNELERALAFYDKALE 85
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
LD + A +Y + Y A F + +
Sbjct: 86 LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 5e-08
Identities = 22/146 (15%), Positives = 32/146 (21%), Gaps = 30/146 (20%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSA------GNEAFQAGR 854
G E+A A K +E + A N
Sbjct: 33 GSEFGDYEKAAEAFT--------KAIE-ENK-----------EDAIPYINFANLLSSVNE 72
Query: 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914
A+ Y AL E AA + Y +A A+
Sbjct: 73 LERALAFYDKAL----ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF 128
Query: 915 SRRATLYEMIRDYDHAASDFHRLIAL 940
T+ + A R + L
Sbjct: 129 YMLGTVLVKLEQPKLALPYLQRAVEL 154
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 36/137 (26%)
Query: 800 SYFTLGRLEEAIAALER--------HES-GNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850
L + + A+ L+R E+ G L +
Sbjct: 134 VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE--------------------- 172
Query: 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
G EA+ + A E P A F N Y + A+ + AI + ++
Sbjct: 173 --GMLDEALSQFAAVT----EQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226
Query: 911 LKAISRRATLYEMIRDY 927
+ A+ + L +
Sbjct: 227 MLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 23/149 (15%), Positives = 37/149 (24%), Gaps = 34/149 (22%)
Query: 800 SYFTLGRLEEAIAALERHESGNGGKMLESLIP--------LAGTVRELLCRKSAGNEAFQ 851
++ LE A+A + K LE L
Sbjct: 66 LLSSVNELERALAFYD--------KALE-LDSSAATAYYGAGNVYVVK------------ 104
Query: 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911
+ EA + + AL + F L A+ A+ L+ N
Sbjct: 105 -EMYKEAKDMFEKAL----RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT 159
Query: 912 KAISRRATLYEMIRDYDHAASDFHRLIAL 940
+A + D A S F +
Sbjct: 160 EARFQFGMCLANEGMLDEALSQFAAVTEQ 188
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 5e-07
Identities = 17/148 (11%), Positives = 34/148 (22%), Gaps = 34/148 (22%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIP--------LAGTVRELLCRKSAGNEAFQA 852
Y +EA E K L L + +L
Sbjct: 101 YVVKEMYKEAKDMFE--------KALR-AGMENGDLFYMLGTVLVKL------------- 138
Query: 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912
+ A+ + A+ E + + +A++ D +
Sbjct: 139 EQPKLALPYLQRAV----ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194
Query: 913 AISRRATLYEMIRDYDHAASDFHRLIAL 940
A Y + + A + I +
Sbjct: 195 AFYNAGVTYAYKENREKALEMLDKAIDI 222
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 9/84 (10%), Positives = 23/84 (27%)
Query: 857 EAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916
+ H+ + A++ + A AI +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 917 RATLYEMIRDYDHAASDFHRLIAL 940
A L + + + A + + + + L
Sbjct: 63 FANLLSSVNELERALAFYDKALEL 86
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 7e-09
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
+Q+G + +A + A + + F A +A+ AI +
Sbjct: 28 AFNQYQSGXYEDAHXVFQALC----VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+D + A + A S L
Sbjct: 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-06
Identities = 17/85 (20%), Positives = 32/85 (37%)
Query: 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672
A R A+G+ A+ +D R AA C L GE+ +A + +
Sbjct: 60 GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119
Query: 673 SDVCVDQKIAVEASDGLQKAQKVSE 697
++ +++ S L+ + E
Sbjct: 120 ANXPEFXELSTRVSSMLEAIKLKKE 144
|
| >1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-08
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 987 YLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKL 1046
+ +G+ V+ +K+ YRKA L HPDKA G + A+ +
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKAT-----------------GQPYEQYAKMI 162
Query: 1047 FKMIAEAYAVLSDPSKRSRY 1066
F + +A++ + ++ Y
Sbjct: 163 FMELNDAWSEFENQGQKPLY 182
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 2/103 (1%)
Query: 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
+ R +E++ ++ AL+ P+ A N+ A A ++A +
Sbjct: 89 RLNRPAESMAYFDKALADPTYPTPYIA--NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146
Query: 911 LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGV 953
A A + A F + + + G
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
E + + +A AL +S P + + RA Y+ L+ A A++
Sbjct: 15 AMEYMRGQDYRQATASIEDAL----KSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 906 LDGNYLKAISRR-ATLYEMIRDYDHAASDFHRLIALLTK 943
+ + + + L + + + F + +A T
Sbjct: 71 IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY 109
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 25/177 (14%), Positives = 45/177 (25%), Gaps = 23/177 (12%)
Query: 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672
A M R A + A+ DP + A + L + A + FR L
Sbjct: 13 QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK 72
Query: 673 SD-----------VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQN-----KTSNDAEI 716
D +C E+ KA N +
Sbjct: 73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP-YIANLNKGICSAKQGQFGL 131
Query: 717 ALGVIDEALFI-SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDAN 772
A + +L + E+ A + + + ++ + L A+
Sbjct: 132 AEAYLKRSLAAQPQFPPAFKEL-ARTKMLAGQLGDADYYFKK----YQSRVEVLQAD 183
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 14/70 (20%), Positives = 25/70 (35%)
Query: 871 ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930
E + A Y + A A A+ D A RA +Y+ ++ D A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 931 ASDFHRLIAL 940
F + +++
Sbjct: 62 QESFRQALSI 71
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-08
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 4/95 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G + +EA + A + P + + AI N A
Sbjct: 24 GLSMLKLANLAEAALAFEAV----CQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
LD + + A + + + A + +
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 6e-08
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912
G ++AV +Y A++ A C+ + ++ L A A + N+
Sbjct: 4 GLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 913 AISRRATLYEMIRDYDHAASDFHRLIALLT 942
A + + Y+ ++IA +
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 29/122 (23%)
Query: 804 LGRLEEAIA----ALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAV 859
LG +A+ A+ G + E + L T R L G + +A
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGK--DLAECYLGLGSTFRTL-------------GEYRKAE 47
Query: 860 EHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN------YLKA 913
+ + P A L + IA + Y +A
Sbjct: 48 AVLANGV----KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQA 103
Query: 914 IS 915
I
Sbjct: 104 IL 105
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 14/64 (21%), Positives = 21/64 (32%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
+T LG R A + V P+ ++V A LG E + +
Sbjct: 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89
Query: 671 SGSD 674
SD
Sbjct: 90 ETSD 93
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-07
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 26/146 (17%)
Query: 804 LGRLEEAIAALER--------HES-GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGR 854
LG + A+ + + +L + A + G
Sbjct: 52 LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL------------YRQAEDRERGKGY 99
Query: 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914
+A+ A +P A R Y L A A A+AL+ + +
Sbjct: 100 LEQALSVLKDAE----RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIR 154
Query: 915 SRRATLYEMIRDYDHAASDFHRLIAL 940
S A LY + D A + + + +
Sbjct: 155 SALAELYLSMGRLDEALAQYAKALEQ 180
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 15/106 (14%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G + + GR+ A+ + AL + +P A L + A+ + +A
Sbjct: 12 GVQLYALGRYDAALTLFERAL----KENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 906 LDGNYLKAISRRA-TLYEMIR----------DYDHAASDFHRLIAL 940
YL + + R + A S +
Sbjct: 68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 45/159 (28%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIP--------LAGTVRELLCRKSAGNEAFQA 852
+ LGR + A+ E + L+ P LA T +L
Sbjct: 15 LYALGRYDAALTLFE--------RALK-ENPQDPEALYWLARTQLKL------------- 52
Query: 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHIT-----------DAIADCN 901
G + A+E+ + P + + AY AL A++
Sbjct: 53 GLVNPALENGKTLV----ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK 108
Query: 902 LAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
A ++ Y +R +Y ++ + D A + + +AL
Sbjct: 109 DAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G +AGR+S+AV ++ F + AY + ++A
Sbjct: 15 GISHAKAGRYSQAVMLLEQVY----DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ +K + Y ++ YD A ++
Sbjct: 71 DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 4e-07
Identities = 25/148 (16%), Positives = 40/148 (27%), Gaps = 34/148 (22%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIP--------LAGTVRELLCRKSAGNEAFQA 852
Y G ++ LE + L P L T ++
Sbjct: 52 YVKTGAVDRGTELLE--------RSLA-DAPDNVKVATVLGLTYVQV------------- 89
Query: 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912
++ AV +P A L +AI +A+ L N K
Sbjct: 90 QKYDLAVPLLIKVAEA----NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145
Query: 913 AISRRATLYEMIRDYDHAASDFHRLIAL 940
A YE + ++ A F + L
Sbjct: 146 VHRAIAFSYEQMGRHEEALPHFKKANEL 173
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 8e-07
Identities = 18/150 (12%), Positives = 33/150 (22%), Gaps = 36/150 (24%)
Query: 800 SYFTLGRLEEAIAALER--------HES-GNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850
S+ GR +A+ LE+ + + G
Sbjct: 17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKT--------------------- 55
Query: 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
G E +L P Y ++ A+ +
Sbjct: 56 --GAVDRGTELLERSL----ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109
Query: 911 LKAISRRATLYEMIRDYDHAASDFHRLIAL 940
R + + +D A F + L
Sbjct: 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGL 139
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 6e-05
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 34/123 (27%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIP--------LAGTVRELLCRKSAGNEAFQA 852
Y + + + A+ L K+ E P L + L
Sbjct: 86 YVQVQKYDLAVPLLI--------KVAE-ANPINFNVRFRLGVALDNL------------- 123
Query: 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912
GR EA++ + AL P A +Y+ + +A+ A LD
Sbjct: 124 GRFDEAIDSFKIALGL----RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179
Query: 913 AIS 915
++
Sbjct: 180 ELA 182
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 6e-05
Identities = 6/67 (8%), Positives = 16/67 (23%)
Query: 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933
+ + ++ ++ + A+ D + Y D
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 934 FHRLIAL 940
R +A
Sbjct: 65 LERSLAD 71
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Query: 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912
R+ EA + A T+ F N ++ A ++ L+ N
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRV--FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176
Query: 913 AISRRATLYEMIRDYDHAASDFHRLIAL 940
A L R+Y A +
Sbjct: 177 VALEMADLLYKEREYVPARQYYDLFAQG 204
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 28/146 (19%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSA------GNEAFQAGR 854
+ R EEA L ++ L + + G + Q +
Sbjct: 115 LYEQKRYEEAYQRLLE------------------ASQDTLYPERSRVFENLGLVSLQMKK 156
Query: 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914
++A E++ +L + A R A +L G +++
Sbjct: 157 PAQAKEYFEKSL----RLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212
Query: 915 SRRATLYEMIRDYDHAASDFHRLIAL 940
L ++ D D AAS +L L
Sbjct: 213 LLGIRLAKVFEDRDTAASYGLQLKRL 238
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 9/94 (9%), Positives = 27/94 (28%), Gaps = 4/94 (4%)
Query: 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906
+ ++ + A + Y + A A+ +
Sbjct: 11 SSGLVPRGSHMGDQNPLKTD----KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI 66
Query: 907 DGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
D + A + A +++ + A ++ + +A
Sbjct: 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 36/203 (17%), Positives = 60/203 (29%), Gaps = 37/203 (18%)
Query: 574 LKGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCML 633
+G + + + K A + G A
Sbjct: 16 PRGSHMGDQNPLKTDKGRDEARDA-------------YIQLGLGYLQRGNTEQAKVPLRK 62
Query: 634 AVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD----------VCVDQKIAV 683
A+ IDP A E + A + +R L S S +QK
Sbjct: 63 ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE 122
Query: 684 EASDGLQKAQKVSECMQRS--------AQLLQNKTSNDAEIALGVIDEALFI-SSYSEKL 734
EA L +A + + +RS L K A+ +++L + +
Sbjct: 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP-AQAKEYF---EKSLRLNRNQPSVA 178
Query: 735 LEMKAEALFMLRKYEEVIQLCEQ 757
LEM A+ L+ R+Y Q +
Sbjct: 179 LEM-ADLLYKEREYVPARQYYDL 200
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 4/98 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G Q G +A AL E P +A A ++ A + A+A
Sbjct: 44 GLGYLQRGNTEQAKVPLRKAL----EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA 99
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943
D + ++ + Y+ A
Sbjct: 100 SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 49.7 bits (120), Expect = 3e-07
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
GN ++ G + EA+E+Y AL P +A + N AY +AI A+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
LD +A Y DYD A + + + L
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 49.7 bits (120), Expect = 3e-07
Identities = 35/149 (23%), Positives = 51/149 (34%), Gaps = 34/149 (22%)
Query: 800 SYFTLGRLEEAIAALERHESGNGGKMLESLIP--------LAGTVRELLCRKSAGNEAFQ 851
+Y+ G +EAI + K LE L P L +
Sbjct: 10 AYYKQGDYDEAIEYYQ--------KALE-LDPRSAEAWYNLGNAYYKQ------------ 48
Query: 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911
G + EA+E+Y AL P +A + N AY +AI A+ LD
Sbjct: 49 -GDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103
Query: 912 KAISRRATLYEMIRDYDHAASDFHRLIAL 940
+A Y DYD A + + + L
Sbjct: 104 EAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 48.9 bits (118), Expect = 5e-07
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
GN ++ G + EA+E+Y AL P A + N AY +AI A+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
LD N +A Y DYD A + + + L
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 4e-04
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
GN ++ G + EA+E+Y AL P A + N AY +AI A+
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Query: 906 LDGNYLKA 913
LD N +A
Sbjct: 106 LDPNNAEA 113
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 6e-07
Identities = 38/293 (12%), Positives = 82/293 (27%), Gaps = 60/293 (20%)
Query: 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALG----VIDEALFISSYSEKLLEMKA 739
+ + Q+ + S + + A +A V+DE S+ + + M A
Sbjct: 17 QCINEAQRVKPSSPERDVERDVFLYR----AYLAQRKYGVVLDEIKPSSAPELQAVRMFA 72
Query: 740 EALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSM---------ELDSSESTKHVSFR 790
E L + + ++ ++ ++ + M D++ T H
Sbjct: 73 EYLASHSRRDAIVAELDREM---SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129
Query: 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850
L + + L RL+ A K L+ + + + A
Sbjct: 130 LECMAMTVQILLKLDRLDLAR------------KELKKMQDQDEDATLTQLATAWVSLAA 177
Query: 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
+ +A + + + +AA + A A A+ D +
Sbjct: 178 GGEKLQDAYYIFQEMA----DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
Query: 911 LKAISRRATLY------------------------EMIRDYDHAASDFHRLIA 939
+ + L I++Y +DF RL+
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVL 286
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 5e-04
Identities = 36/235 (15%), Positives = 63/235 (26%), Gaps = 37/235 (15%)
Query: 720 VIDEALFISSYSE----KLLEMKAEALFMLRKYEEVIQLCEQTFH--------FAEKNSP 767
I+EA + S + A RKY V+ + + FAE +
Sbjct: 18 CINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLAS 77
Query: 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLE 827
+ ELD S + YF + A+ L + +S
Sbjct: 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS-------- 129
Query: 828 SLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAA- 886
L +A TV+ LL + R A + + A + A
Sbjct: 130 -LECMAMTVQILL----------KLDRLDLARKELKKMQ----DQDEDATLTQLATAWVS 174
Query: 887 -YKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ DA L ++ +A + ++ A +
Sbjct: 175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 7e-07
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G + AG ++E+++ + A+ P + + + A L +A+ N I
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQL----DPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 906 LDGNYL--KAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ + + +A I + A L
Sbjct: 69 VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-06
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 34/120 (28%)
Query: 800 SYFTLGRLEEAIAALER--------HES-GNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850
+ G E+I E+ + GK L +L
Sbjct: 15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL--------------------- 53
Query: 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
R+ EAV+ Y ++ V + + +A A + + L+ ++
Sbjct: 54 --ERYEEAVDCYNYVIN--VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 8e-04
Identities = 10/60 (16%), Positives = 20/60 (33%)
Query: 881 CNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ T++I AI LD K + + Y+ A ++ +I +
Sbjct: 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 1/96 (1%)
Query: 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912
+A+ Y A NRA +K +A+ + A ALD + +
Sbjct: 235 KISQQALSAYAQAEKV-DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293
Query: 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948
R L E + + + + S
Sbjct: 294 PQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGS 329
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 23/182 (12%), Positives = 53/182 (29%), Gaps = 9/182 (4%)
Query: 798 FKSYFTLGRLEEAIAALERHES--GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA-GR 854
+GR E + +++ L + E + AG +
Sbjct: 24 MTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEE 83
Query: 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL-RHITDAIADCNLAIALDGNYLKA 913
+ ++ L S A + A + +A + A+ L+ ++A
Sbjct: 84 MEKTLQQMEEVL----GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA 139
Query: 914 ISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTA 973
++ +Y D A + F + K + R + + +R + +
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALT-HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198
Query: 974 VE 975
V
Sbjct: 199 VR 200
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 8e-07
Identities = 12/85 (14%), Positives = 18/85 (21%), Gaps = 4/85 (4%)
Query: 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915
E A L + Y A+ A+ D Y A
Sbjct: 2 QAITERLEAML----AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWK 57
Query: 916 RRATLYEMIRDYDHAASDFHRLIAL 940
+ D A + +A
Sbjct: 58 WLGKTLQGQGDRAGARQAWESGLAA 82
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 18/104 (17%)
Query: 807 LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAAL 866
++ LE ML +R L G + + A+ H AA
Sbjct: 1 MQAITERLE--------AMLA-QGTDNMLLRFTL-----GKTYAEHEQFDAALPHLRAA- 45
Query: 867 SCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
++ P ++ + + A +A +
Sbjct: 46 ---LDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
|
| >3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 1e-06
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 981 DIPLDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAE 1038
D D + ++ S V A ++ Y++ HPD Q
Sbjct: 40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQR---------------SQT 84
Query: 1039 VHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQN 1080
+EK ++ +AY L P R Y L+ ++ +
Sbjct: 85 EKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTD 126
|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 23/75 (30%)
Query: 995 SVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAY 1054
++ + +++ YR+ +HHPD + + + +AY
Sbjct: 29 TIDQSRLRKEYRQLQAQHHPDM-----------------------AQQGSEQSSTLNQAY 65
Query: 1055 AVLSDPSKRSRYDLE 1069
L DP +RS+Y L+
Sbjct: 66 HTLKDPLRRSQYMLK 80
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHP-FAAICFCNRAAAYKALRHITDAIADCNLAI 904
E G A++ L ++ P + AY+ L A+ + AI
Sbjct: 7 IKELINQGDIENALQALEEFL----QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
Query: 905 ALDGNYLKAISRRATLYEMIRDYD 928
L+ + +R+ + +++ Y+
Sbjct: 63 ELNPDSPALQARKM-VMDILNFYN 85
|
| >3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-06
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKD 1042
+ + + + +++ Y++A L HPDK Q K A
Sbjct: 39 SGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQ-------------KGASANQKYM 85
Query: 1043 AEKLFKMIAEAY 1054
AEK+F+++ EA+
Sbjct: 86 AEKVFELLQEAW 97
|
| >2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 6e-06
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 17/70 (24%)
Query: 990 LGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKM 1049
+G+ V+ +K+ YRKA L HP KA G + A+ +F
Sbjct: 39 VGMADLVTPEQVKKVYRKAVLVVHPCKAT-----------------GQPYEQYAKMIFME 81
Query: 1050 IAEAYAVLSD 1059
+ +A++ +
Sbjct: 82 LNDAWSEFEN 91
|
| >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-06
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 25/78 (32%)
Query: 987 YLILGV-ESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEK 1045
IL + E++++ +K +RK L +HPDK G +
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGG------------------------SPF 52
Query: 1046 LFKMIAEAYAVLSDPSKR 1063
L I EA L
Sbjct: 53 LATKINEAKDFLEKRGIS 70
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 9e-06
Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 14/152 (9%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCN--LA 903
G ++G V + AA+ E + + AY L A+ + L
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 904 IALDGNYLKAISR----RATLYEMIRDYDHAASDFHRLIAL-LTKQIEKSNQSGVSDRSI 958
+A ++ +++ ++D A R L +++++ ++ G +
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR--HLDISRELN--DKVGEARALY 131
Query: 959 NLAN---DLRQARMRLTAVEEEARKDIPLDMY 987
NL N ++ + + D
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 11/124 (8%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCN--LA 903
G AG V + AA+ E + + AY L A+ L
Sbjct: 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114
Query: 904 IALDGNYLKAISRR----ATLYEMIRDYDHAASDFHRLIAL-LTKQIEKSNQSGVSDRSI 958
+A N ++ +++ +D AA R L L +Q+ ++
Sbjct: 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER--HLTLARQLG--DRLSEGRALY 170
Query: 959 NLAN 962
NL N
Sbjct: 171 NLGN 174
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 56/360 (15%), Positives = 93/360 (25%), Gaps = 82/360 (22%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAI---------DPDFLRVQVRAANCHLALGEIEDAS 662
+ A + G+ AL A + + L A + +G + D
Sbjct: 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114
Query: 663 KYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVID 722
Y V +K + E N E A +
Sbjct: 115 IYVDKVKH------VCEKFSSPYRIES------PELDCEEGWTRLKCGGNQNERAKVCFE 162
Query: 723 EALFISSYSEKLLEMKAEALFML---RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELD 779
+AL + + A A + L + I Q A + +P
Sbjct: 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ----AIRLNP------------ 206
Query: 780 SSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVREL 839
+ ++ + K E +E + LE P V
Sbjct: 207 -----DNQYLKVLLALKLHKMREEGEEEGEGEKLVE--------EALE-KAPGVTDVL-- 250
Query: 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAY------------ 887
+SA + +A+E AL E P A C Y
Sbjct: 251 ---RSAAKFYRRKDEPDKAIELLKKAL----EYIPNNAYLHCQIGCCYRAKVFQVMNLRE 303
Query: 888 -------KALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
K L I A+A A + N + S A+L+ + Y+ A F + +
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 44/287 (15%), Positives = 82/287 (28%), Gaps = 66/287 (22%)
Query: 697 ECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCE 756
EC++++ +L+Q + ++ AEI V A + + + +V +
Sbjct: 72 ECLRKAEELIQQEHADQAEIRSLVTWGNY-------------AWVYYHMGRLSDVQIYVD 118
Query: 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816
+ H EK S P S ELD E + + E A E+
Sbjct: 119 KVKHVCEKFSSPYRIE--SPELDCEEGWTRL-------------KCGGNQNERAKVCFEK 163
Query: 817 -------------------HESGNGGKMLESLIPLAGTVR---------ELLCRKSAGNE 848
+ N ++ PL +R LL K
Sbjct: 164 ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH-KM 222
Query: 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG 908
+ E + AL E P + A Y+ AI A+
Sbjct: 223 REEGEEEGEGEKLVEEAL----EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278
Query: 909 NYLKAISRRATLY-----EMIRDYDHAASDFHRLIALLTKQIEKSNQ 950
N + Y +++ ++ +L+ L+ + +
Sbjct: 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 37/365 (10%), Positives = 90/365 (24%), Gaps = 98/365 (26%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMAL---GRMRDALSDCMLAVAIDPDFLRV 644
++++P S A L ++A+ A+ ++PD +
Sbjct: 165 LEKKPKNPEF-------------TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211
Query: 645 QVRAAN----CHLALGEIEDASKYFRMCLQSGSD----------VCVDQKIAVEASDGLQ 690
+V A E + K L+ + +A + L+
Sbjct: 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271
Query: 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEE 750
KA + + +G Y K+ ++ + +
Sbjct: 272 KALEY------------IPNNAYLHCQIGCC--------YRAKVFQVMNLRENGMYGKRK 311
Query: 751 VIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEA 810
+++L +K + E + + + + + EEA
Sbjct: 312 LLELIGHAVAHLKK----------ADEANDNLFRVCSI--------LASLHALADQYEEA 353
Query: 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS--- 867
+ K + ++LL + + +Q +A+ H+ +
Sbjct: 354 EYYFQ--------KEFSKELTPVA--KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403
Query: 868 -----------------CTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910
+ + + A + + A D +
Sbjct: 404 KSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463
Query: 911 LKAIS 915
A S
Sbjct: 464 PSASS 468
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCN--LA 903
G ++G V + AA+ E + + AY L A+ + L
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
Query: 904 IA--LDGNYLKAIS--RRATLYEMIRDYDHAASDFHRLIAL-LTKQIEKSNQSGVSDRSI 958
+A + +A + +++ ++D A R L +++++ ++ G +
Sbjct: 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR--HLDISRELN--DKVGEARALY 127
Query: 959 NLAN 962
NL N
Sbjct: 128 NLGN 131
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 21/157 (13%), Positives = 42/157 (26%), Gaps = 27/157 (17%)
Query: 801 YFTLGRLEEAIAALERH-----ESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855
Y + R +EA A+ + +SG+ + ++ G AG
Sbjct: 36 YAFMDRFDEARASFQALQQQAQKSGDHTAE-------HRALHQV------GMVERMAGNW 82
Query: 856 SEAVEHYTAALSCTVE---SHPFAAICFCNRAAAYKALRHITDAIADCN--LAIALDGNY 910
A + A+ A + A + L A +
Sbjct: 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
Query: 911 LKAISRR----ATLYEMIRDYDHAASDFHRLIALLTK 943
AI+ L + ++ A + R + +
Sbjct: 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
E + S A+ + + E+ P + + Y+ L DAI I
Sbjct: 14 AQEHLKHDNASRALALFEELV----ETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69
Query: 906 LDGNYLKA 913
+
Sbjct: 70 VAREEGTQ 77
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 31/180 (17%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860
+ + E + AL+ N P LL G +S ++
Sbjct: 20 FASQQNPEAQLQALQDKIRAN---------PQNSEQWALL-----GEYYLWQNDYSNSLL 65
Query: 861 HYTAALSCTVESHPFAAICFCNRAAAYKAL---RHITDAIADCNLAIALDGNYLKAISRR 917
Y AL E+ + A A + A+ALD N + A+
Sbjct: 66 AYRQALQLRGENAEL----YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL 121
Query: 918 ATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEE 977
A+ M +Y A + +++ L + +I + L + A++ + E
Sbjct: 122 ASDAFMQANYAQAIELWQKVMDLNSPRINR----------TQLVESINMAKLLQRRSDLE 171
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 39.7 bits (94), Expect = 4e-04
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 846 GNEAFQA-GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAI 904
GN A+ G + EA+E+Y AL P A + N AY +AI A+
Sbjct: 16 GN-AYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 905 ALDGNYLKA 913
LD N +A
Sbjct: 71 ELDPNNAEA 79
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-04
Identities = 17/143 (11%), Positives = 37/143 (25%), Gaps = 9/143 (6%)
Query: 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSE 857
+ + L A L A + L+ + +
Sbjct: 206 YLLHGDDKSLNRASELLGEIVQ------SSPEFTYARAEKALVDIVRHSQHPLDEKQLAA 259
Query: 858 AVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917
++ + +I + +A + ++ N I L+ ++L
Sbjct: 260 LNTEIDNIVT--LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLL 316
Query: 918 ATLYEMIRDYDHAASDFHRLIAL 940
+YEM AA + L
Sbjct: 317 GKVYEMKGMNREAADAYLTAFNL 339
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1166 | |||
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.93 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.93 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.91 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.91 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.91 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.91 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.9 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.9 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.89 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.89 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.89 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.89 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.88 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.87 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.86 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.85 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.83 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.82 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.81 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.8 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.8 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.8 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.79 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.79 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.79 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.79 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.78 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.78 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.78 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.78 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.78 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.78 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.77 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.74 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.73 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.69 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.69 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.68 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.68 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.66 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.64 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.63 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.62 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.62 | |
| 3lz8_A | 329 | Putative chaperone DNAJ; structure genomics, struc | 99.62 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.61 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.61 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.6 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.59 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.57 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.57 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.57 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.56 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.55 | |
| 2l6l_A | 155 | DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, | 99.55 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.54 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.53 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.52 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.51 | |
| 2yua_A | 99 | Williams-beuren syndrome chromosome region 18 prot | 99.5 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.5 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.49 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 2ctr_A | 88 | DNAJ homolog subfamily B member 9; J-domain, chape | 99.49 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.47 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.47 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.47 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.47 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.47 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.46 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.46 | |
| 1wjz_A | 94 | 1700030A21RIK protein; J-domain, DNAJ like protein | 99.44 | |
| 2ej7_A | 82 | HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati | 99.44 | |
| 2dmx_A | 92 | DNAJ homolog subfamily B member 8; DNAJ J domain, | 99.44 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.44 | |
| 1hdj_A | 77 | Human HSP40, HDJ-1; molecular chaperone; NMR {Homo | 99.44 | |
| 2dn9_A | 79 | DNAJ homolog subfamily A member 3; J-domain, TID1, | 99.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.43 | |
| 2ctp_A | 78 | DNAJ homolog subfamily B member 12; J-domain, chap | 99.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.42 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.42 | |
| 2och_A | 73 | Hypothetical protein DNJ-12; HSP40, J-domain, chap | 99.42 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.42 | |
| 2o37_A | 92 | Protein SIS1; HSP40, J-domain, cochaperone, APC900 | 99.41 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.41 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.41 | |
| 2cug_A | 88 | Mkiaa0962 protein; DNAJ-like domain, structural ge | 99.41 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.41 | |
| 2lgw_A | 99 | DNAJ homolog subfamily B member 2; J domain, HSJ1A | 99.4 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.4 | |
| 2ctq_A | 112 | DNAJ homolog subfamily C member 12; J-domain, chap | 99.4 | |
| 1bq0_A | 103 | DNAJ, HSP40; chaperone, heat shock, protein foldin | 99.39 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.39 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.38 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.38 | |
| 2ctw_A | 109 | DNAJ homolog subfamily C member 5; J-domain, chape | 99.38 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.37 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.36 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.35 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.34 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.33 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.32 | |
| 2qsa_A | 109 | DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s | 99.32 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.31 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.31 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.31 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.31 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.3 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.28 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.28 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.27 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.27 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.26 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.26 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.25 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.25 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.25 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.25 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.24 | |
| 2ys8_A | 90 | RAB-related GTP-binding protein RABJ; DNAJ domain, | 99.24 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.23 | |
| 3hho_A | 174 | CO-chaperone protein HSCB homolog; structural geno | 99.23 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.23 | |
| 1fpo_A | 171 | HSC20, chaperone protein HSCB; molecular chaperone | 99.23 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.22 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.21 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.21 | |
| 1gh6_A | 114 | Large T antigen; tumor suppressor, oncoprotein, an | 99.2 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.2 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.2 | |
| 3bvo_A | 207 | CO-chaperone protein HSCB, mitochondrial precurso; | 99.2 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.19 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.19 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.18 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.18 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.17 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.16 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.16 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.16 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.16 | |
| 2qwo_B | 92 | Putative tyrosine-protein phosphatase auxilin; cha | 99.16 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.15 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.15 | |
| 1faf_A | 79 | Large T antigen; J domain, HPD motif, anti-paralle | 99.15 | |
| 2pf4_E | 174 | Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, | 99.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.14 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.14 | |
| 1iur_A | 88 | KIAA0730 protein; DNAJ like domain, riken structur | 99.13 | |
| 1n4c_A | 182 | Auxilin; four helix bundle, protein binding; NMR { | 99.13 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.13 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.12 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.11 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.09 | |
| 3ag7_A | 106 | Putative uncharacterized protein F9E10.5; J-domain | 99.09 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.08 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.08 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.08 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.07 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.06 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.06 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.05 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.03 | |
| 3uo3_A | 181 | J-type CO-chaperone JAC1, mitochondrial; structura | 99.02 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.0 | |
| 2guz_A | 71 | Mitochondrial import inner membrane translocase su | 98.99 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.98 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.96 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.95 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.94 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.93 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.91 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.9 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.88 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.86 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.76 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.75 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.72 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.64 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.62 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.62 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.58 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.58 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.42 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.32 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.28 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.26 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.24 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.19 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.16 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.14 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.1 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.07 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.06 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.94 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.79 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.75 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.64 | |
| 2guz_B | 65 | Mitochondrial import inner membrane translocase su | 97.42 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.01 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.75 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.69 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.66 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.63 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.54 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.31 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.04 | |
| 2ctt_A | 104 | DNAJ homolog subfamily A member 3; ZING finger, be | 95.89 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.79 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.74 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.67 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.45 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.38 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.21 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.07 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.9 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.84 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.71 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.48 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.18 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.84 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 93.84 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.67 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.24 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.26 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 91.45 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.41 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.3 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.17 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 88.62 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 87.69 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.2 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 85.61 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.45 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 85.32 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.27 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 83.5 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.94 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.88 |
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-39 Score=372.88 Aligned_cols=405 Identities=21% Similarity=0.285 Sum_probs=323.4
Q ss_pred CcchhHHHHHHHHHhch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 591 EPNLASAETIAAQEACE--KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 591 ep~~A~a~~~aAIe~~e--~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
++..|...+..+++..+ ..+|+.+|.+|+.+|++++|+..|+++++++|++..++..+|.+|..+|++++|+.+|+++
T Consensus 41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45556667777766544 5778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCch---hHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc
Q 039706 669 LQSGSDVC---VDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML 745 (1166)
Q Consensus 669 Lel~P~n~---~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l 745 (1166)
++++|.+. ..+..+..+ ......+..+.. ....|++++|+..|++++.+.|.+..++..+|.+|..+
T Consensus 121 ~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~a~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 121 LKSNPSENEEKEAQSQLIKS-------DEMQRLRSQALN---AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE 190 (450)
T ss_dssp HTSCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HhcCCCChhhHHHHHHHHHH-------HHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 99999865 333333222 111112222222 23479999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCch
Q 039706 746 RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKM 825 (1166)
Q Consensus 746 GdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~ 825 (1166)
|++++|+..|++++...|.+.. .+..+|.+|...|++++|+..|++++...+...
T Consensus 191 g~~~~A~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 245 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKNDNTE-------------------------AFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245 (450)
T ss_dssp TCGGGGHHHHHHHHHHHCSCHH-------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH
Confidence 9999999999999999886532 256799999999999999999999876554421
Q ss_pred hhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 039706 826 LESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905 (1166)
Q Consensus 826 le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe 905 (1166)
. .............+..+|..+...|++++|+.+|++++.+.+........+|.++|.++..+|++++|+..|++++.
T Consensus 246 ~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 246 R--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11111222334445667999999999999999999999988443223356899999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhHHhhhhccCccc
Q 039706 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLD 985 (1166)
Q Consensus 906 ldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~e~~~rk~~~~d 985 (1166)
++|+++.+|..+|.+|..+|++++|+..|++++++.|++.... ..+..++..++... ..+
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------------~~l~~~~~~~~~~~-------~~~ 383 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR-------------EGLEKAQRLLKQSQ-------KRD 383 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH-------------HHHHHHHHHHHHHH-------SCC
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH-------------HHHHHHHHHhhccc-------chh
Confidence 9999999999999999999999999999999999998876543 22333433333221 348
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhcc
Q 039706 986 MYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSR 1065 (1166)
Q Consensus 986 yY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~~ 1065 (1166)
+|.+||+.+.++..+++++|+++++++|||+.+. ++.++.++++|++|++||++|+||.+|+.
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~-----------------~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN-----------------EEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS-----------------HHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC-----------------chHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 9999999999999999999999999999999752 23357899999999999999999999999
Q ss_pred cchh
Q 039706 1066 YDLE 1069 (1166)
Q Consensus 1066 YD~~ 1069 (1166)
||.+
T Consensus 447 yd~g 450 (450)
T 2y4t_A 447 FDDG 450 (450)
T ss_dssp ----
T ss_pred ccCC
Confidence 9973
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-28 Score=278.71 Aligned_cols=293 Identities=18% Similarity=0.098 Sum_probs=168.4
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
+++.|+..+.+.+..+|++..+.. .+|.+++..|++++|+..+++++..+|.+..+|..+|.+|...
T Consensus 14 ~~~~A~~~~~~~~~~~p~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPDNTGVLL-------------LLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHH-------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHH-------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 346667777777777777654443 3677777778888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHH
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLL 735 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al 735 (1166)
|++++|+..|++++.++|++...+..+..++. ..|++++|+..|+++++++|+...++
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----------------------~~g~~~~A~~~~~~al~~~p~~~~~~ 138 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALV----------------------AAGDMEGAVQAYVSALQYNPDLYCVR 138 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------------------HHSCSSHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHH----------------------HcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 88888888888888777775443333222222 23555555555555555555555555
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 039706 736 EMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALE 815 (1166)
Q Consensus 736 ~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~le 815 (1166)
..+|.++..+|++++|+..|++++...|.+.. .+..+|.+|...|++++|+..|+
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------------------~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAV-------------------------AWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH-------------------------HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-------------------------HHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555555555555555543311 12335555555555555555555
Q ss_pred HHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH
Q 039706 816 RHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD 895 (1166)
Q Consensus 816 kAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee 895 (1166)
+++...+ .....+..+|.++...|++++|+..|++++.++ |.+..++.++|.+|..+|++++
T Consensus 194 ~al~~~p--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 194 KAVTLDP--------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS----PNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHHHHCT--------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCC--------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cCCHHHHHHHHHHHHHcCCHHH
Confidence 5432221 123334444555555555555555555555554 4445555555555555555555
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 896 AIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 896 Ai~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|+..|+++++++|+++.++..+|.+|...|++++|+..|++++++.|.+.+
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 306 (388)
T 1w3b_A 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH
Confidence 555555555555555555555555555555555555555555555554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-27 Score=265.75 Aligned_cols=323 Identities=16% Similarity=0.221 Sum_probs=262.7
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
.++.|+..+.+++..+|++. .+++++|.+|+.+|++++|+..|+++++++|++..++..+|.+|..+
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~-------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDNY-------------IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCH-------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccH-------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 34556666666666665543 45677999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCC---CchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH
Q 039706 656 GEIEDASKYFRMCLQSGS---DVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE 732 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P---~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~ 732 (1166)
|++++|+..|++++++.| .+...+..+.. .......+..+.. ....|++++|+..+++++...|.++
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~a~~---~~~~~~~~~A~~~~~~~~~~~~~~~ 154 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK-------ADEMQRLRSQALD---AFDGADYTAAITFLDKILEVCVWDA 154 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHH-------HHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHhCCCch
Confidence 999999999999999999 65443333222 2222222222222 3358999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 039706 733 KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIA 812 (1166)
Q Consensus 733 ~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~ 812 (1166)
.++..+|.++..+|++++|+..+++++.+.|.+.. .+..+|.+|...|++++|+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------------------~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE-------------------------AFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHH-------------------------HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------------------------HHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999998876432 25679999999999999999
Q ss_pred HHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc
Q 039706 813 ALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH 892 (1166)
Q Consensus 813 ~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq 892 (1166)
.+++++...+.... ..........+.....+|..+...|++++|+..|++++...+........++..+|.+|..+|+
T Consensus 210 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 210 EVRECLKLDQDHKR--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhCccchH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence 99998765544211 1112222233445567799999999999999999999998854333334668889999999999
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 893 ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 893 ~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++++.|++.+.+
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999876543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=279.85 Aligned_cols=298 Identities=15% Similarity=0.152 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+|+.+|.+|...|++++|+..|++++.++|++..+|..+|.+|...|++++|+..|+++++++|++...+..+..++.
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35677799999999999999999999999999999999999999999999999999999999999998777666666665
Q ss_pred HhhhHHhHHHHHHHHHH------------HHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQ------------LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLC 755 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~------------~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~l 755 (1166)
.+++...+...+..+.. ...+...|++++|+..|++++.++|....++..+|.++...|++++|+..+
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555444443333211 111335777888888888888888888888888888888888888888888
Q ss_pred HHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccc
Q 039706 756 EQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGT 835 (1166)
Q Consensus 756 ekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~ 835 (1166)
++++.+.|++.. .+..+|.+|...|++++|+..|++++...+.
T Consensus 227 ~~al~~~p~~~~-------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------ 269 (388)
T 1w3b_A 227 LRALSLSPNHAV-------------------------VHGNLACVYYEQGLIDLAIDTYRRAIELQPH------------ 269 (388)
T ss_dssp HHHHHHCTTCHH-------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------------
T ss_pred HHHHhhCcCCHH-------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------
Confidence 888877765421 2456788888888888888888887554333
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
....+..+|.++...|++++|+.+|++++++. |.+..+|.++|.++..+|++++|+..|+++++++|++..++.
T Consensus 270 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 270 --FPDAYCNLANALKEKGSVAEAEDCYNTALRLC----PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp --CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 23456777888888888888888888888887 777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+|.+|..+|++++|+..|++++++.|+..+..
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~ 376 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 888888888888888888888888887766544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-25 Score=245.11 Aligned_cols=276 Identities=15% Similarity=0.110 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
...++.+|.+++..|+|++|+..|++++..+|.+..+++.+|.+|..+|++++|+..|+++++++|++...+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------ 76 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ------ 76 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHH------
Confidence 45678899999999999999999999999999999999999999999999999999999999999986432211
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC---ChHHHHHHH------------HHHHHHccCHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS---YSEKLLEMK------------AEALFMLRKYEEVI 752 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P---~~~~al~~l------------A~~y~~lGdyeeAi 752 (1166)
.+.+ +...|++++|+..|++++.+.| .+..++..+ |.++...|++++|+
T Consensus 77 --------------l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 77 --------------RGHL--LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp --------------HHHH--HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------HHHH--HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 1111 1246999999999999999999 888888777 79999999999999
Q ss_pred HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 753 QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 753 ~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
..+++++...|.+.. .+..+|.+|...|++++|+..+++++...+.
T Consensus 141 ~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------- 186 (359)
T 3ieg_A 141 TFLDKILEVCVWDAE-------------------------LRELRAECFIKEGEPRKAISDLKAASKLKSD--------- 186 (359)
T ss_dssp HHHHHHHHHCTTCHH-------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC---------
T ss_pred HHHHHHHHhCCCchH-------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------
Confidence 999999999886422 2467999999999999999999998654433
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHH------------HHHHHHHHhhchhHHHHHH
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFC------------NRAAAYKALRHITDAIADC 900 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~------------nlA~ay~~lGq~eeAi~~l 900 (1166)
....+..+|.++...|++++|+..|++++.+. |....++. .+|.++...|++++|+..+
T Consensus 187 -----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 187 -----NTEAFYKISTLYYQLGDHELSLSEVRECLKLD----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257 (359)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567788999999999999999999999988 55444433 4588999999999999999
Q ss_pred HHHHHhCCChH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 901 NLAIALDGNYL----KAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 901 ekALeldP~~~----~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
++++.+.|++. .++..+|.+|..+|++++|+..|++++++.|.+...+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (359)
T 3ieg_A 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309 (359)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence 99999999977 4567799999999999999999999999988776543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=265.20 Aligned_cols=313 Identities=15% Similarity=0.045 Sum_probs=233.3
Q ss_pred CcchhHHHHHHHHHhch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 591 EPNLASAETIAAQEACE--KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 591 ep~~A~a~~~aAIe~~e--~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
+.+.|...+..++...| ..+|+++|.+|+.+|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+ +
T Consensus 40 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~ 118 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-V 118 (537)
T ss_dssp CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-H
T ss_pred cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-H
Confidence 45566677777766543 46678888888888888888888888888888888888888888888888888888885 6
Q ss_pred HHcCCCchhHHH-------HHHHHHHHhhhHHhH---------------H--------------------------HHHH
Q 039706 669 LQSGSDVCVDQK-------IAVEASDGLQKAQKV---------------S--------------------------ECMQ 700 (1166)
Q Consensus 669 Lel~P~n~~a~~-------~l~Ea~~~L~k~~~~---------------~--------------------------e~~~ 700 (1166)
+.+.|+...... ...++...+...... . .+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (537)
T 3fp2_A 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198 (537)
T ss_dssp HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHH
Confidence 766665432210 000111111110000 0 0000
Q ss_pred HHHHHHH------hhcCCCHHHHHHHHHHHHHhCCChHH-------HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 701 RSAQLLQ------NKTSNDAEIALGVIDEALFISSYSEK-------LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 701 ~a~~~l~------~~~~gd~eeALe~lekALel~P~~~~-------al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.....+. ....+++++|+..|+++++..|.+.. ++..+|.++...|++++|+..+++++.+.|. ..
T Consensus 199 ~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 277 (537)
T 3fp2_A 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PN 277 (537)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-ch
Confidence 0000000 01135899999999999999999755 5778888999999999999999999999774 11
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
.+..+|.+|...|++++|+..+++++...+ .....+..+|.
T Consensus 278 -------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~l~~ 318 (537)
T 3fp2_A 278 -------------------------SYIFLALTLADKENSQEFFKFFQKAVDLNP--------------EYPPTYYHRGQ 318 (537)
T ss_dssp -------------------------HHHHHHHHTCCSSCCHHHHHHHHHHHHHCT--------------TCHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHhcCHHHHHHHHHHHhccCC--------------CCHHHHHHHHH
Confidence 245689999999999999999999754332 34556788899
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
++...|++++|+..|++++.+. |....+|.++|.+|..+|++++|+..|+++++++|.++.++..+|.+|..+|++
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSLN----PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 9999999999999999999988 778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHhh
Q 039706 928 DHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~~ 948 (1166)
++|+..|++++++.|......
T Consensus 395 ~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCS
T ss_pred HHHHHHHHHHHHcCCcchhhH
Confidence 999999999999998876543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=246.47 Aligned_cols=279 Identities=11% Similarity=0.002 Sum_probs=244.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..+..+|..++..|+|++|+..|++++..+|.+..++..++.++..+|++++|+..++++++.+|.+...+..+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------ 96 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV------ 96 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH------
Confidence 34566899999999999999999999999999999999999999999999999999999999999865432222
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSN-DAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~g-d~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
+.. +...| ++++|+.+|++++.+.|....++..+|.++..+|++++|+..+++++.+.|....
T Consensus 97 --------------~~~--~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 160 (330)
T 3hym_B 97 --------------GCY--YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL 160 (330)
T ss_dssp --------------HHH--HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH
T ss_pred --------------HHH--HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHH
Confidence 111 22467 9999999999999999999999999999999999999999999999999886532
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
. +..+|.+|...|++++|+..+++++...+. ....+..+|.
T Consensus 161 ~-------------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~l~~ 201 (330)
T 3hym_B 161 P-------------------------MLYIGLEYGLTNNSKLAERFFSQALSIAPE--------------DPFVMHEVGV 201 (330)
T ss_dssp H-------------------------HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--------------CHHHHHHHHH
T ss_pred H-------------------------HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--------------ChHHHHHHHH
Confidence 1 455899999999999999999998654443 3566778899
Q ss_pred HHHHcCChHHHHHHHHHHHhccccC-----CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVES-----HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~-----~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
++...|++++|+.+|++++.+.+.. .+....+|.++|.+|..+|++++|+..|+++++++|+++.++..+|.+|.
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 281 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS 281 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHH
Confidence 9999999999999999999976321 15567899999999999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 923 MIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 923 ~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+|++++|+..|++++++.|++...+
T Consensus 282 ~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 282 LMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp HHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred HhccHHHHHHHHHHHHccCCCchHHH
Confidence 99999999999999999988876544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=261.98 Aligned_cols=313 Identities=13% Similarity=0.043 Sum_probs=253.0
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
.++.|+..+.+++..+|+ ..+|+++|.+|+.+|++++|+..|+++++++|++..+++.+|.+|..+
T Consensus 21 ~~~~A~~~~~~al~~~p~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKED--------------PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCcc--------------HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 456666666666666653 245778999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh-----------------------------------------
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK----------------------------------------- 694 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~----------------------------------------- 694 (1166)
|++++|+..|++++.+.|.+...................
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 999999999999999998654433222221111110000
Q ss_pred -------------------HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-----h--C-------CChHHHHHHHHHH
Q 039706 695 -------------------VSECMQRSAQLLQNKTSNDAEIALGVIDEALF-----I--S-------SYSEKLLEMKAEA 741 (1166)
Q Consensus 695 -------------------~~e~~~~a~~~l~~~~~gd~eeALe~lekALe-----l--~-------P~~~~al~~lA~~ 741 (1166)
....+..+...+.....|++++|+..|++++. + . |....++..+|.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 11111111112212237999999999999999 5 3 5567899999999
Q ss_pred HHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 039706 742 LFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGN 821 (1166)
Q Consensus 742 y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~ 821 (1166)
+...|++++|+..+++++...|. . ..+..+|.+|...|++++|+..+++++...
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~-~-------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR-V-------------------------NSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC-H-------------------------HHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc-H-------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 99999999999999999998774 1 124668999999999999999999986544
Q ss_pred CCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHH
Q 039706 822 GGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCN 901 (1166)
Q Consensus 822 ~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~le 901 (1166)
+. ....+..+|.++...|++++|+.+|++++.+. |.+..++..+|.+|..+|++++|+..|+
T Consensus 301 ~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 301 SN--------------NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD----PENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp TT--------------CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC----SSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred cC--------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33 23456778999999999999999999999987 7778899999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 902 LAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 902 kALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+++.++|.++.++..+|.+|..+|++++|+..|++++++.|....
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 999999999999999999999999999999999999999888743
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=257.95 Aligned_cols=333 Identities=15% Similarity=0.067 Sum_probs=248.5
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHH-------------------HHHHHh--chHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAET-------------------IAAQEA--CEKWRLSNRAATRMALGRMRDALSDCML 633 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~-------------------~aAIe~--~e~~ay~nrA~ayl~lG~y~eAI~~fek 633 (1166)
..++.|+..+.+++..+|++..+++ ..+++. ....+++.+|.+|..+|++++|+..|+
T Consensus 39 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~- 117 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS- 117 (537)
T ss_dssp TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-
T ss_pred ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence 4578899999999999998765443 233333 334778999999999999999999995
Q ss_pred HHHhCCCCHHHH--------------------------------------------------------------------
Q 039706 634 AVAIDPDFLRVQ-------------------------------------------------------------------- 645 (1166)
Q Consensus 634 ALeldP~~~~A~-------------------------------------------------------------------- 645 (1166)
++.++|+....+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence 887777654322
Q ss_pred HHH--------HHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH-------HHhhhHHhHHHHHHHHH-------
Q 039706 646 VRA--------ANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS-------DGLQKAQKVSECMQRSA------- 703 (1166)
Q Consensus 646 ~~L--------A~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~-------~~L~k~~~~~e~~~~a~------- 703 (1166)
..+ +......|++++|+..|+++++..|++...+..+..++ ....+...+...+..+.
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~ 277 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCch
Confidence 111 22223346899999999999999999765433333222 22222233333222221
Q ss_pred ----HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccC
Q 039706 704 ----QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELD 779 (1166)
Q Consensus 704 ----~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld 779 (1166)
....+...|++++|+..|++++...|.++.++..+|.++..+|++++|+..+++++.+.|.+..
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 345 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY------------ 345 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------------
Confidence 1122446899999999999999999999999999999999999999999999999999886532
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHH
Q 039706 780 SSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAV 859 (1166)
Q Consensus 780 ~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAi 859 (1166)
.+..+|.+|...|++++|+..+++++...+ .....+..+|.++...|++++|+
T Consensus 346 -------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 346 -------------PYIQLACLLYKQGKFTESEAFFNETKLKFP--------------TLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp -------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------TCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHhCCHHHHH
Confidence 146689999999999999999999754333 23455677799999999999999
Q ss_pred HHHHHHHhccccCCc--hhHHHHHHHHHHHHHh----------hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 860 EHYTAALSCTVESHP--FAAICFCNRAAAYKAL----------RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 860 e~y~kALel~~e~~p--~~a~a~~nlA~ay~~l----------Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
.+|++++.+.+.... .....++.+|.+|..+ |++++|+..|+++++++|++..++..+|.+|..+|++
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 999999998743222 2234477889999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHh
Q 039706 928 DHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~ 947 (1166)
++|+..|++++++.|...+.
T Consensus 479 ~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 479 DEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHHHhCCCcHHH
Confidence 99999999999999887654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=250.86 Aligned_cols=322 Identities=11% Similarity=0.049 Sum_probs=256.9
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHH-------------------HHHHHhc--hHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAET-------------------IAAQEAC--EKWRLSNRAATRMALGRMRDALSDCML 633 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~-------------------~aAIe~~--e~~ay~nrA~ayl~lG~y~eAI~~fek 633 (1166)
..++.|+..+.+++...|++..+++ ..+++.. ...+++.+|.+|..+|++++|+..|++
T Consensus 40 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 119 (450)
T 2y4t_A 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4568888889999888887655433 2333332 357789999999999999999999999
Q ss_pred HHHhCCCCH---HHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHH
Q 039706 634 AVAIDPDFL---RVQVRA------------ANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSEC 698 (1166)
Q Consensus 634 ALeldP~~~---~A~~~L------------A~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~ 698 (1166)
++.++|.+. .++..+ |.++...|++++|+..|++++.+.|.+...+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---------------- 183 (450)
T 2y4t_A 120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR---------------- 183 (450)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH----------------
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH----------------
Confidence 999999998 888877 5669999999999999999999999854322211
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 699 MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 699 ~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
+.+ +...|++++|+..|++++...|.++.++..+|.+|..+|++++|+..+++++.+.|.+...+..+.
T Consensus 184 ----~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~----- 252 (450)
T 2y4t_A 184 ----AEC--FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK----- 252 (450)
T ss_dssp ----HHH--HHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-----
T ss_pred ----HHH--HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHH-----
Confidence 111 224799999999999999999999999999999999999999999999999999886533210000
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
..........+|.++...|++++|+.+|++++...+.. .......+..+|.++...|++++|
T Consensus 253 --------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~----------~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 253 --------QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI----------AEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS----------HHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc----------hHHHHHHHHHHHHHHHHCCCHHHH
Confidence 00011122445899999999999999999986544331 011245677889999999999999
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH------------Hhh-
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE------------MIR- 925 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~------------~lG- 925 (1166)
+..|++++.+. |.++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..++.++. .+|
T Consensus 315 ~~~~~~a~~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 315 IRVCSEVLQME----PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHhC----cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999999988 8889999999999999999999999999999999999999999996644 344
Q ss_pred ----CHHHHHHHHHH-HHHHhhhhH
Q 039706 926 ----DYDHAASDFHR-LIALLTKQI 945 (1166)
Q Consensus 926 ----dyeeAi~~yek-ALeL~P~~~ 945 (1166)
+.+++...|++ +++..|+..
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred CccCCHHHHHHHHHHHHHHhCCCCC
Confidence 55677888886 777777653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=250.71 Aligned_cols=298 Identities=14% Similarity=0.056 Sum_probs=245.9
Q ss_pred CCCchhHH-HhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039706 575 KGDRNSEV-DRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHL 653 (1166)
Q Consensus 575 ~~~~~a~~-~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl 653 (1166)
..++.++. .+.+++...|++... ....++++|.+|+..|++++|+..|+++++++|.+..+++.+|.+|.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLR---------DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTT---------TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCccc---------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34555665 666666666654311 12346779999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHH
Q 039706 654 ALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEK 733 (1166)
Q Consensus 654 ~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~ 733 (1166)
.+|++++|+.+|+++++++|.+...+.. .+.. +...|++++|+..+++++.+.|....
T Consensus 110 ~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~ 167 (368)
T 1fch_A 110 ENEQELLAISALRRCLELKPDNQTALMA--------------------LAVS--FTNESLQRQACEILRDWLRYTPAYAH 167 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHH--------------------HHHH--HHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred HCcCHHHHHHHHHHHHhcCCCCHHHHHH--------------------HHHH--HHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 9999999999999999999986432221 1111 22479999999999999999998876
Q ss_pred HHH----------------HHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHH
Q 039706 734 LLE----------------MKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLI 797 (1166)
Q Consensus 734 al~----------------~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lL 797 (1166)
++. .++.++ ..|++++|+..+++++.+.|.... ...+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~-----------------------~~~~~~l 223 (368)
T 1fch_A 168 LVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSID-----------------------PDVQCGL 223 (368)
T ss_dssp GCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC-----------------------HHHHHHH
T ss_pred HHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCccc-----------------------HHHHHHH
Confidence 664 456666 999999999999999999886321 1225679
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhH
Q 039706 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA 877 (1166)
Q Consensus 798 A~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a 877 (1166)
|.+|...|++++|+..|++++...+ .....+..+|.++...|++++|+.+|++++.+. |...
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~~ 285 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRP--------------NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ----PGYI 285 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcH
Confidence 9999999999999999999754332 335677888999999999999999999999988 8889
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh-----------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNY-----------LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~-----------~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
.+++++|.+|..+|++++|+..|++++.+.|+. ..+|..+|.+|..+|++++|...++++++..++..
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 364 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhc
Confidence 999999999999999999999999999999988 89999999999999999999999999998876654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=239.57 Aligned_cols=272 Identities=13% Similarity=0.065 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
.++.+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+.+|++++++.|.+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------- 94 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA-------- 94 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH--------
Confidence 357799999999999999999999999999999999999999999999999999999999999985432211
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHH--------------HH-HHHHccCHHHHHHH
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMK--------------AE-ALFMLRKYEEVIQL 754 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~l--------------A~-~y~~lGdyeeAi~~ 754 (1166)
.+.. +...|++++|+..+++++...|....++..+ +. ++...|++++|+..
T Consensus 95 ------------la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 95 ------------LAVS--HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp ------------HHHH--HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHH
T ss_pred ------------HHHH--HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 1111 2347999999999999999999988777776 66 68899999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
+++++...|.+. ..+..+|.+|...|++++|+.++++++...+
T Consensus 161 ~~~~~~~~~~~~-------------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------------ 203 (327)
T 3cv0_A 161 LHAALEMNPNDA-------------------------QLHASLGVLYNLSNNYDSAAANLRRAVELRP------------ 203 (327)
T ss_dssp HHHHHHHSTTCH-------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHhhCCCCH-------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------------
Confidence 999999987542 1246789999999999999999999754332
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC-----
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN----- 909 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~----- 909 (1166)
.....+..+|.++...|++++|+.+|++++.+. |....+|.++|.+|..+|++++|+..|++++.+.|.
T Consensus 204 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 204 --DDAQLWNKLGATLANGNRPQEALDAYNRALDIN----PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred --CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 335567788999999999999999999999988 788899999999999999999999999999999999
Q ss_pred -------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 910 -------YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 910 -------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
...++..+|.+|..+|++++|...++++++..|+..+
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 8999999999999999999999999999999888754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-23 Score=252.27 Aligned_cols=334 Identities=13% Similarity=0.020 Sum_probs=236.3
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHHHHHHHhc---------------------h----HHHHHHHHHHHHHcCChHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAETIAAQEAC---------------------E----KWRLSNRAATRMALGRMRDALS 629 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~---------------------e----~~ay~nrA~ayl~lG~y~eAI~ 629 (1166)
..++.|+..+.+.+..+|++..+....+.-.. . ...|..++..|...|++++|+.
T Consensus 214 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 44578888999999999887665443221000 0 0011222333344444444444
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHH-------
Q 039706 630 DCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRS------- 702 (1166)
Q Consensus 630 ~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a------- 702 (1166)
.|++++.. |.+..++..+|.+|...|++++|+..|+++++.+|.+...+..+..++...++...+...+..+
T Consensus 294 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 372 (597)
T 2xpi_A 294 YLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372 (597)
T ss_dssp HHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc
Confidence 44444444 3444444444444444444444444444444444444333333333333222222222211111
Q ss_pred -----HHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccc
Q 039706 703 -----AQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSME 777 (1166)
Q Consensus 703 -----~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ 777 (1166)
.....+...|++++|+.+|++++++.|.+..++..++.+|...|++++|+..|++++...|.+..
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------- 442 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL---------- 442 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH----------
Confidence 00111335899999999999999999999999999999999999999999999999998875432
Q ss_pred cCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHH
Q 039706 778 LDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSE 857 (1166)
Q Consensus 778 ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeE 857 (1166)
.+..++.+|...|++++|+.+|++++...+ .....+..+|.++...|++++
T Consensus 443 ---------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 443 ---------------PYLFLGMQHMQLGNILLANEYLQSSYALFQ--------------YDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp ---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--------------CCHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHhCCHHH
Confidence 145689999999999999999999744322 234567788999999999999
Q ss_pred HHHHHHHHHhcccc--CCchh-HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHH
Q 039706 858 AVEHYTAALSCTVE--SHPFA-AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDF 934 (1166)
Q Consensus 858 Aie~y~kALel~~e--~~p~~-a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~y 934 (1166)
|+++|++++++.+. ..|.. ..+|..+|.+|...|++++|+..|+++++++|+++.+|..+|.+|...|++++|+..|
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999998532 13554 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHhh
Q 039706 935 HRLIALLTKQIEKS 948 (1166)
Q Consensus 935 ekALeL~P~~~e~~ 948 (1166)
++++++.|++....
T Consensus 574 ~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 574 HESLAISPNEIMAS 587 (597)
T ss_dssp HHHHHHCTTCHHHH
T ss_pred HHHHhcCCCChHHH
Confidence 99999999886644
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=246.85 Aligned_cols=269 Identities=14% Similarity=0.041 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
.|+++|.+++..|++++|+..|++++.++|++..+|+.+|.+|..+|++++|+.+|+++++++|.+...+..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------- 138 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA-------- 138 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH--------
Confidence 367799999999999999999999999999999999999999999999999999999999999986432222
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHH----------HHHHHHccCHHHHHHHHHHHH
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMK----------AEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~l----------A~~y~~lGdyeeAi~~lekAL 759 (1166)
.+.+ +...|++++|+.+|++++.+.|....++..+ |.++..+|++++|+.+|++++
T Consensus 139 ------------l~~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 139 ------------LAVS--YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp ------------HHHH--HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred ------------HHHH--HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 1222 2247999999999999999999877666555 999999999999999999999
Q ss_pred HhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHH
Q 039706 760 HFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVREL 839 (1166)
Q Consensus 760 el~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a 839 (1166)
.+.|..... ..+..+|.+|...|++++|+.+|++++...+ ...
T Consensus 205 ~~~p~~~~~-----------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------------~~~ 247 (365)
T 4eqf_A 205 HQNGDMIDP-----------------------DLQTGLGVLFHLSGEFNRAIDAFNAALTVRP--------------EDY 247 (365)
T ss_dssp HHSCSSCCH-----------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------TCH
T ss_pred HhCcCccCH-----------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------CCH
Confidence 998863211 1246799999999999999999999854333 335
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC----------
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN---------- 909 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~---------- 909 (1166)
..+..+|.++...|++++|+.+|++++++. |..+.+|+++|.+|..+|++++|+.+|+++++++|.
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 323 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQ----PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHP 323 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchh
Confidence 677888999999999999999999999998 888999999999999999999999999999999987
Q ss_pred --hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 910 --YLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 910 --~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
...+|..++.++..+|+.+.|...+++.+...
T Consensus 324 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 324 AISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp ---CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 36789999999999999999888777655443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=233.30 Aligned_cols=285 Identities=11% Similarity=-0.012 Sum_probs=234.6
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA 654 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~ 654 (1166)
..++.|+..+.+.+..+|.+.. ++..++.+++.+|++++|+..++++++.+|.+..+++.+|.++..
T Consensus 36 g~~~~A~~~~~~~l~~~p~~~~-------------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKDPFHAS-------------CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTT-------------THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCChh-------------hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 3445566666666666555443 345588999999999999999999999999999999999999999
Q ss_pred cC-ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHH
Q 039706 655 LG-EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEK 733 (1166)
Q Consensus 655 lG-d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~ 733 (1166)
+| ++++|+.+|++++.++|.+...+..+ +.. +...|++++|+..|++++.+.|....
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l--------------------~~~--~~~~~~~~~A~~~~~~a~~~~~~~~~ 160 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAY--------------------GHS--FAVESEHDQAMAAYFTAAQLMKGCHL 160 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHH--------------------HHH--HHHHTCHHHHHHHHHHHHHHTTTCSH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHH--------------------HHH--HHHccCHHHHHHHHHHHHHhccccHH
Confidence 99 99999999999999999865432222 111 12469999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 039706 734 LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAA 813 (1166)
Q Consensus 734 al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~ 813 (1166)
++..+|.+|..+|++++|+..+++++...|.+.. .+..+|.+|...|++++|+.+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------------------~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF-------------------------VMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH-------------------------HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH-------------------------HHHHHHHHHHHcccHHHHHHH
Confidence 9999999999999999999999999999876422 246799999999999999999
Q ss_pred HHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhch
Q 039706 814 LERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHI 893 (1166)
Q Consensus 814 lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ 893 (1166)
+++++...+... .....+.....+..+|.++...|++++|+.+|++++++. |.+..+|.++|.+|..+|++
T Consensus 216 ~~~a~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 216 FLDALEKIKAIG-----NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI----PQNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp HHHHHHHHTTTS-----CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhhhcc-----ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC----ccchHHHHHHHHHHHHhccH
Confidence 999754221100 000012334567788999999999999999999999988 78899999999999999999
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHH-HHhhCHH
Q 039706 894 TDAIADCNLAIALDGNYLKAISRRATLY-EMIRDYD 928 (1166)
Q Consensus 894 eeAi~~lekALeldP~~~~A~~~LA~ay-~~lGdye 928 (1166)
++|+.+|+++++++|++..++..++.++ ..+|+.+
T Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999998 4566543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=247.77 Aligned_cols=320 Identities=13% Similarity=0.070 Sum_probs=222.8
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF--------------- 641 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~--------------- 641 (1166)
++.|+..+.+++..+|++. .+|+.+|.+|..+|++++|+..|++++.++|..
T Consensus 55 ~~~A~~~~~~al~~~p~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (514)
T 2gw1_A 55 LKKVVEMSTKALELKPDYS-------------KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121 (514)
T ss_dssp HHHHHHHHHHHHHHCSCCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccChHHH-------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Confidence 4555555555555555543 445668999999999999999999998887632
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHHHH---
Q 039706 642 ----------------------------------------------------------------LRVQVRAANCHLA--- 654 (1166)
Q Consensus 642 ----------------------------------------------------------------~~A~~~LA~lyl~--- 654 (1166)
..+++.+|.+++.
T Consensus 122 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (514)
T 2gw1_A 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS 201 (514)
T ss_dssp HHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh
Confidence 6677888888776
Q ss_pred cCChHHHHHHHHHHHH-----c--CCCch-------hHHHHHHHHHHHhhhHHhHHHHHHHHH-----------HHHHhh
Q 039706 655 LGEIEDASKYFRMCLQ-----S--GSDVC-------VDQKIAVEASDGLQKAQKVSECMQRSA-----------QLLQNK 709 (1166)
Q Consensus 655 lGd~eeAl~~fekALe-----l--~P~n~-------~a~~~l~Ea~~~L~k~~~~~e~~~~a~-----------~~l~~~ 709 (1166)
.|++++|+..|++++. + .|.+. ..+..+..++...++...+...+..+. ....+.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~ 281 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA 281 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHH
Confidence 8899999999999988 5 55432 112222222222222222221111110 011123
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
..|++++|+..+++++...|.+..++..+|.++..+|++++|+..+++++.+.|.+..
T Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------------- 339 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF---------------------- 339 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH----------------------
T ss_pred HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH----------------------
Confidence 3566666666666666666666666666666666666666666666666665554321
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
.+..+|.+|...|++++|+..+++++...+ .....+..+|.++...|++++|+.+|++++.+.
T Consensus 340 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 340 ---PYIQLACLAYRENKFDDCETLFSEAKRKFP--------------EAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp ---HHHHHHHHTTTTTCHHHHHHHHHHHHHHST--------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHcc--------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 245577778888888888888887643222 223456778999999999999999999999987
Q ss_pred ccCCc--hhHHHHHHHHHHHHH---hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 870 VESHP--FAAICFCNRAAAYKA---LRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 870 ~e~~p--~~a~a~~nlA~ay~~---lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
+.... ....+|+++|.++.. +|++++|+..|++++.++|+++.++..+|.+|..+|++++|+..|++++++.|++
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 32211 114489999999999 9999999999999999999999999999999999999999999999999999988
Q ss_pred HHhh
Q 039706 945 IEKS 948 (1166)
Q Consensus 945 ~e~~ 948 (1166)
.+.+
T Consensus 483 ~~~~ 486 (514)
T 2gw1_A 483 EEKL 486 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-23 Score=248.49 Aligned_cols=346 Identities=12% Similarity=0.012 Sum_probs=234.1
Q ss_pred CCchhHHHhhhHHhhCcchhHH------------------HHHHHH-HhchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 576 GDRNSEVDRGQEIKQEPNLASA------------------ETIAAQ-EACEKWRLSNRAATRMALGRMRDALSDCMLAVA 636 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a------------------~~~aAI-e~~e~~ay~nrA~ayl~lG~y~eAI~~fekALe 636 (1166)
.++.|+..+.+.+...|+.... .+..++ ......+++.+|.+|...|++++|+..|++
T Consensus 99 ~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--- 175 (597)
T 2xpi_A 99 QYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE--- 175 (597)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCS---
T ss_pred CchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhc---
Confidence 4566777777777666654221 111111 122346788999999999999999999986
Q ss_pred hCCCC-------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH--
Q 039706 637 IDPDF-------------------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV-- 695 (1166)
Q Consensus 637 ldP~~-------------------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~-- 695 (1166)
..|.. ..+|+.+|.+|...|++++|+..|+++++.+|.+...+..+..+..........
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 255 (597)
T 2xpi_A 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255 (597)
T ss_dssp SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHH
T ss_pred cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHH
Confidence 45554 889999999999999999999999999999998766544433211100000000
Q ss_pred ------------HHHHHHHHH--HHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 696 ------------SECMQRSAQ--LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 696 ------------~e~~~~a~~--~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
......... ...+...|++++|+..|++++.. |.+..++..++.+|...|++++|+..|++++..
T Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp HHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 000000000 00012345555666666555554 445555556666666666666666666666655
Q ss_pred ccCCCCCccccCcccccCccchhhh---------hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 762 AEKNSPPLDANGQSMELDSSESTKH---------VSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 762 ~p~n~~a~~~~g~~l~ld~~~~~~~---------~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
.|.+...+..++.++...+...... .......+..++.+|...|++++|+.+|++++..
T Consensus 335 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------ 402 (597)
T 2xpi_A 335 DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM------------ 402 (597)
T ss_dssp CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------
Confidence 5554443322211110000000000 0000123466889999999999999999987432
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
.+.....+..+|..+...|++++|++.|++++.+. |.+..+|..+|.+|...|++++|+..|+++++++|.++.
T Consensus 403 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 476 (597)
T 2xpi_A 403 --DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF----QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL 476 (597)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 22345567788999999999999999999999887 778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+|..+|.+|...|++++|+..|++++++.|+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=237.23 Aligned_cols=282 Identities=11% Similarity=0.042 Sum_probs=221.8
Q ss_pred HHHHHcCChHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 616 ATRMALGRMRDALS-DCMLAVAIDPDFL----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~-~fekALeldP~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
.++..+|+|++|+. .|++++.+.|.++ .+++.+|.+|...|++++|+.+|+++++++|.+...+..+
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 104 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL-------- 104 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH--------
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH--------
Confidence 37778899999999 9999999998774 6799999999999999999999999999999864322211
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
+.+ +...|++++|+..|++++.+.|.+..++..+|.+|..+|++++|+..+++++.+.|.+...+.
T Consensus 105 ------------~~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 170 (368)
T 1fch_A 105 ------------GTT--QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170 (368)
T ss_dssp ------------HHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred ------------HHH--HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 111 234799999999999999999999999999999999999999999999999999987765432
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
..+...... .. ...+..++.++ ..|++++|+..|++++...+. ......+..+|.++.
T Consensus 171 ~~~~~~~~~--~~-------~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 171 PAEEGAGGA--GL-------GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT------------SIDPDVQCGLGVLFN 228 (368)
T ss_dssp ------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTT------------SCCHHHHHHHHHHHH
T ss_pred HHHHHhhhh--cc-------cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcC------------cccHHHHHHHHHHHH
Confidence 211110000 00 00012355555 899999999999997543332 114567778899999
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
..|++++|+.+|++++.+. |..+.+|+++|.+|..+|++++|+..|+++++++|.++.++..+|.+|..+|++++|
T Consensus 229 ~~g~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVR----PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988 888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhH
Q 039706 931 ASDFHRLIALLTKQI 945 (1166)
Q Consensus 931 i~~yekALeL~P~~~ 945 (1166)
+..|++++++.|+..
T Consensus 305 ~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 305 VEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999999999873
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=237.00 Aligned_cols=287 Identities=16% Similarity=0.062 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAI---------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ 679 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALel---------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~ 679 (1166)
..|.++|.+|..+|++++|+..|++|+++ +|....+|.++|.+|..+|++++|+.+|++++++.+......
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 55777999999999999999999999987 678889999999999999999999999999998643211000
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH---ccCHHHHHHHHH
Q 039706 680 KIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM---LRKYEEVIQLCE 756 (1166)
Q Consensus 680 ~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~---lGdyeeAi~~le 756 (1166)
. . .....+...+..+.....++|++|+.+|+++++++|+++.++..++.++.. .+++++|+..++
T Consensus 132 ~-----------~-~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 132 R-----------I-ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp C-----------C-CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred c-----------h-hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 0 0 000111111222223346789999999999999999999999999988665 467789999999
Q ss_pred HHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV 836 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~ 836 (1166)
++++++|.+... .......++.++...+++++|+.++++++... +
T Consensus 200 ~al~l~p~~~~~---------------------~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--------------~ 244 (472)
T 4g1t_A 200 QAIRLNPDNQYL---------------------KVLLALKLHKMREEGEEEGEGEKLVEEALEKA--------------P 244 (472)
T ss_dssp HHHHHCSSCHHH---------------------HHHHHHHHHHCC------CHHHHHHHHHHHHC--------------S
T ss_pred HHhhcCCcchHH---------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--------------c
Confidence 999998865322 00111223334455678899999999974433 3
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh-------------------hchhHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL-------------------RHITDAI 897 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l-------------------Gq~eeAi 897 (1166)
.....+..+|.++...|++++|+..|++|+++. |.++.+++++|.+|... ..+++|+
T Consensus 245 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 320 (472)
T 4g1t_A 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI----PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320 (472)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Confidence 345667788999999999999999999999998 88999999999998654 4578899
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 898 ADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 898 ~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
..+++++.++|.+..++..+|.+|..+|++++|+..|++++++.|....
T Consensus 321 ~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999999999999999998766543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=243.78 Aligned_cols=300 Identities=16% Similarity=0.091 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCchhH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAID--------PDFLRVQVRAANCHLALG--EIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeld--------P~~~~A~~~LA~lyl~lG--d~eeAl~~fekALel~P~n~~a 678 (1166)
..|.|+|.+|..+|++++|+.+|++++++. +..+.++..+|.++...| +|++|+.+|+++++++|+++..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~ 174 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence 468899999999999999999999999874 456788999998887765 6999999999999999998877
Q ss_pred HHHHHHHHHHhhhH---HhHHHHHHHH--------------HHHHH--hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 679 QKIAVEASDGLQKA---QKVSECMQRS--------------AQLLQ--NKTSNDAEIALGVIDEALFISSYSEKLLEMKA 739 (1166)
Q Consensus 679 ~~~l~Ea~~~L~k~---~~~~e~~~~a--------------~~~l~--~~~~gd~eeALe~lekALel~P~~~~al~~lA 739 (1166)
+..+..+...+... ..+...+..+ +..+. ....+++++|+.+|++++.+.|....++..+|
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg 254 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 66555554333222 1222211111 11111 22357889999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHH-----------------
Q 039706 740 EALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYF----------------- 802 (1166)
Q Consensus 740 ~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~----------------- 802 (1166)
.+|...|++++|+..+++++++.|++..+ +..+|.+|.
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------------~~~lg~~y~~~~~~~~~~~~~~~~~~ 309 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYIPNNAYL-------------------------HCQIGCCYRAKVFQVMNLRENGMYGK 309 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHH-------------------------HHHHHHHHHHHHHHHHHC------CH
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCChHHH-------------------------HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999976443 222333332
Q ss_pred --HcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHH
Q 039706 803 --TLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICF 880 (1166)
Q Consensus 803 --~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~ 880 (1166)
..+.+++|+..++++....+ .....+..+|.++...|+|++|+.+|+++|.+++.. .....++
T Consensus 310 ~~~~~~~~~A~~~~~~a~~~~~--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~-~~~~~~~ 374 (472)
T 4g1t_A 310 RKLLELIGHAVAHLKKADEAND--------------NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP-VAKQLLH 374 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT--------------TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH-HHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhhcCC--------------chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC-hHHHHHH
Confidence 23346677777777643322 233456678999999999999999999999987221 1223456
Q ss_pred HHHHHH-HHHhhchhHHHHHHHHHHHh------------------------CCChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 881 CNRAAA-YKALRHITDAIADCNLAIAL------------------------DGNYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 881 ~nlA~a-y~~lGq~eeAi~~lekALel------------------------dP~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
+++|.+ +..+|++++|+.+|.+||++ +|.++.+|..+|.+|..+|++++|+.+|+
T Consensus 375 ~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666654 45789999999999998876 46667789999999999999999999999
Q ss_pred HHHHHhhhhHHhh
Q 039706 936 RLIALLTKQIEKS 948 (1166)
Q Consensus 936 kALeL~P~~~e~~ 948 (1166)
+||++.|..+.+.
T Consensus 455 kALe~~~~~p~a~ 467 (472)
T 4g1t_A 455 RGLESGSLIPSAS 467 (472)
T ss_dssp -------------
T ss_pred HHHhcCCCCCcHh
Confidence 9999988876543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-23 Score=232.10 Aligned_cols=266 Identities=12% Similarity=0.060 Sum_probs=210.0
Q ss_pred HHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 039706 628 LSDCMLAVAIDPDFL----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA 703 (1166)
Q Consensus 628 I~~fekALeldP~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~ 703 (1166)
+..+.+++...+.++ ..++.+|.++...|++++|+.+|+++++++|.+...+. ..+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------------------~lg 106 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQ--------------------FLG 106 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH--------------------HHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHH--------------------HHH
Confidence 344555555555544 45999999999999999999999999999998643222 122
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccch
Q 039706 704 QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSES 783 (1166)
Q Consensus 704 ~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~ 783 (1166)
.. +...|++++|+..|++++.++|.+..++..+|.+|..+|++++|+.+|++++.+.|.+...+..++.
T Consensus 107 ~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~--------- 175 (365)
T 4eqf_A 107 IT--QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG--------- 175 (365)
T ss_dssp HH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------
T ss_pred HH--HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhcc---------
Confidence 22 2247999999999999999999999999999999999999999999999999999876544221110
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHH
Q 039706 784 TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYT 863 (1166)
Q Consensus 784 ~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~ 863 (1166)
....+..+|.+|...|++++|+.+|++++...+. ......+..+|.++...|++++|+.+|+
T Consensus 176 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 237 (365)
T 4eqf_A 176 ------SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD------------MIDPDLQTGLGVLFHLSGEFNRAIDAFN 237 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHSCS------------SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC------------ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0111345789999999999999999998554332 1135567788999999999999999999
Q ss_pred HHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 864 AALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 864 kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+++++. |.++.+|+++|.+|..+|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..|++++++.|+
T Consensus 238 ~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 238 AALTVR----PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 999998 8889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHH
Q 039706 944 QIE 946 (1166)
Q Consensus 944 ~~e 946 (1166)
...
T Consensus 314 ~~~ 316 (365)
T 4eqf_A 314 SRN 316 (365)
T ss_dssp C--
T ss_pred cCC
Confidence 654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-22 Score=211.85 Aligned_cols=237 Identities=20% Similarity=0.210 Sum_probs=204.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
...+|+.+|.+++..|+|++|+..|+++++++ .+..++..+|.+|..+|++++|+.+|++++++.|....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------- 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA--------- 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc---------
Confidence 34567889999999999999999999999999 99999999999999999999999999999887654210
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
++. ..+.++..+|.++..+|++++|+..+++++.+.|.
T Consensus 74 --------------------------~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-- 111 (258)
T 3uq3_A 74 --------------------------DYK--------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-- 111 (258)
T ss_dssp --------------------------CHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--
T ss_pred --------------------------chH--------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--
Confidence 000 12466778888888899999999999888887652
Q ss_pred CCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh
Q 039706 767 PPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG 846 (1166)
Q Consensus 767 ~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG 846 (1166)
+.++..+|++++|+..+++++. ..+.....+..+|
T Consensus 112 -------------------------------~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~ 146 (258)
T 3uq3_A 112 -------------------------------ADILTKLRNAEKELKKAEAEAY--------------VNPEKAEEARLEG 146 (258)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHH--------------CCHHHHHHHHHHH
T ss_pred -------------------------------hHHHHHHhHHHHHHHHHHHHHH--------------cCcchHHHHHHHH
Confidence 2346677888899988888632 3445567788889
Q ss_pred HHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
.+++..|++++|+.+|++++.+. |.+..+|+++|.+|..+|++++|+..|+++++++|+++.++..+|.+|..+|+
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 039706 927 YDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 927 yeeAi~~yekALeL~P~~ 944 (1166)
+++|+..|++++++.|+.
T Consensus 223 ~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 223 YASALETLDAARTKDAEV 240 (258)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhh
Confidence 999999999999999543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=236.83 Aligned_cols=249 Identities=9% Similarity=-0.022 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE-IEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd-~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
.+|+++|.++...|++++|+..|+++|.++|++..+|+.+|.+|..+|+ +++|+.+|++++.++|++...+..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~--- 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV--- 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH---
Confidence 3455589999999999999999999999999999999999999999997 999999999999999997554333222
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
++ ...|++++|+..|+++|+++|.+..+|..+|.++..+|++++|+.+|+++|+++|.+..
T Consensus 175 -----------------~~--~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 175 -----------------LV--EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp -----------------HH--HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred -----------------HH--HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence 21 23589999999999999999999999999999999999999999999999999997643
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHH-cCCHHHH-----HHHHHHHhcCCCCchhhhhhhhccchHHHHH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT-LGRLEEA-----IAALERHESGNGGKMLESLIPLAGTVRELLC 841 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~-lGd~eeA-----l~~lekAl~~~~~k~le~a~~L~~~~~~a~~ 841 (1166)
+ |..+|.+|.. .|.+++| +.+|++++... +.....
T Consensus 236 a-------------------------~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--------------P~~~~a 276 (382)
T 2h6f_A 236 V-------------------------WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--------------PHNESA 276 (382)
T ss_dssp H-------------------------HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------------TTCHHH
T ss_pred H-------------------------HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--------------CCCHHH
Confidence 3 4668888988 5554666 35566653322 223444
Q ss_pred HhhhhHHHHHcC--ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh---------chhHHHHHHHHH-HHhCCC
Q 039706 842 RKSAGNEAFQAG--RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR---------HITDAIADCNLA-IALDGN 909 (1166)
Q Consensus 842 l~~lG~~~~~~G--~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG---------q~eeAi~~lekA-LeldP~ 909 (1166)
|..+|.++...| ++++|++.+.++ +.+ |....++..+|.+|..++ .+++|+..|+++ ++++|.
T Consensus 277 ~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~----p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 277 WNYLKGILQDRGLSKYPNLLNQLLDL-QPS----HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHTTTCGGGCHHHHHHHHHH-TTT----CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHccCccchHHHHHHHHHh-ccC----CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch
Confidence 555566666655 466666666665 444 566666666666666663 246666667666 666666
Q ss_pred hHHHHHHHHHHHHH
Q 039706 910 YLKAISRRATLYEM 923 (1166)
Q Consensus 910 ~~~A~~~LA~ay~~ 923 (1166)
....|..++.++..
T Consensus 352 r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 352 RKEYWRYIGRSLQS 365 (382)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666665554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-21 Score=219.63 Aligned_cols=293 Identities=14% Similarity=0.095 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDF----LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~----~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
.+++.+|.+++..|++++|+..|++++.+.|.+ ..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 80 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 80 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---------
Confidence 356789999999999999999999999999998 4689999999999999999999999998753211
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccC-----------
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRK----------- 747 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGd----------- 747 (1166)
.........+...+.. +...|++++|+.++++++.+.|.. ..++..+|.+|..+|+
T Consensus 81 -----~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 153 (406)
T 3sf4_A 81 -----GDQLGEAKASGNLGNT--LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153 (406)
T ss_dssp -----TCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------C
T ss_pred -----cccHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhh
Confidence 0011111222222222 235899999999999999987643 4589999999999999
Q ss_pred ---------HHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 748 ---------YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 748 ---------yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
+++|+.++++++.+.+..... ......+..+|.+|...|++++|+.++++++
T Consensus 154 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 154 EFPEEVRDALQAAVDFYEENLSLVTALGDR-------------------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccCc-------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999999886543211 1123346779999999999999999999974
Q ss_pred cCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhHH
Q 039706 819 SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE--SHPFAAICFCNRAAAYKALRHITDA 896 (1166)
Q Consensus 819 ~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~eeA 896 (1166)
.. ..........+..+..+|.++...|++++|+.+|++++.+.+. ..+..+.++.++|.+|..+|++++|
T Consensus 215 ~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 215 LI--------AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HH--------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HH--------HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 31 1112223344667888999999999999999999999988632 2223377899999999999999999
Q ss_pred HHHHHHHHHhCCCh------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 897 IADCNLAIALDGNY------LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 897 i~~lekALeldP~~------~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
+.+|++++.+.+.. ..++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 99999999986543 6789999999999999999999999999997665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-21 Score=222.58 Aligned_cols=295 Identities=15% Similarity=0.142 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFL----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
..++.+|.+++..|+|++|+..|+++++++|++. .+++.+|.+|..+|++++|+.+|++++.+...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------- 118 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS---------- 118 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------
Confidence 4467799999999999999999999999999986 58999999999999999999999999875211
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh------CCChHHHHHHHHHHHHHccC-----------
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFI------SSYSEKLLEMKAEALFMLRK----------- 747 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel------~P~~~~al~~lA~~y~~lGd----------- 747 (1166)
.........++...+.+ +...|++++|+.+|++++.+ .+....++..+|.+|..+|+
T Consensus 119 ----~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 192 (411)
T 4a1s_A 119 ----MNDRLGEAKSSGNLGNT--LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192 (411)
T ss_dssp ----TTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred ----ccCchHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhh
Confidence 00011111222222222 23589999999999999998 55667899999999999999
Q ss_pred ------HHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 039706 748 ------YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGN 821 (1166)
Q Consensus 748 ------yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~ 821 (1166)
+++|+.++++++.+.+.... .....+.+..+|.+|...|++++|+.++++++...
T Consensus 193 ~~a~~~~~~A~~~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 193 DDVKEALTRAVEFYQENLKLMRDLGD-------------------RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99999999999987654321 01223446779999999999999999999974321
Q ss_pred CCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC--CchhHHHHHHHHHHHHHhhchhHHHHH
Q 039706 822 GGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES--HPFAAICFCNRAAAYKALRHITDAIAD 899 (1166)
Q Consensus 822 ~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~--~p~~a~a~~nlA~ay~~lGq~eeAi~~ 899 (1166)
.........+..+..+|.++...|++++|+.+|++++.+.+.. ......++.++|.+|..+|++++|+.+
T Consensus 254 --------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (411)
T 4a1s_A 254 --------REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEY 325 (411)
T ss_dssp --------HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1122233345678889999999999999999999999987422 224478899999999999999999999
Q ss_pred HHHHHHhCCC------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 900 CNLAIALDGN------YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 900 lekALeldP~------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|++++.+.+. ...++..+|.+|..+|++++|+.+|++++++.++..+
T Consensus 326 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 9999998544 3568999999999999999999999999998766533
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=214.78 Aligned_cols=244 Identities=16% Similarity=0.056 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..++++|.+++..|++++|+..|+++++++|.+..+++.+|.+|..+|++++|+.+|++++. .|.+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~----------- 71 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK----------- 71 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-----------
Confidence 45688999999999999999999999999999999999999999999999999999999998 333211
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
....++..+|.++..+|++++|+..+++++++.|.+..
T Consensus 72 -----------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~- 109 (272)
T 3u4t_A 72 -----------------------------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD- 109 (272)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH-
Confidence 02345566677777777777777777777776665422
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
.+..+|.+|...|++++|+.+|++++...+ .....+..+|..
T Consensus 110 ------------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------------~~~~~~~~l~~~ 151 (272)
T 3u4t_A 110 ------------------------MYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--------------TDPKVFYELGQA 151 (272)
T ss_dssp ------------------------HHHHHHHHHHHTTCHHHHHHHHGGGCCSSC--------------CCHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHccCHHHHHHHHHHHhhcCC--------------CcHHHHHHHHHH
Confidence 134567777777777777777776643322 234455666755
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhC---CC-----hHHHHHHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH---ITDAIADCNLAIALD---GN-----YLKAISRR 917 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq---~eeAi~~lekALeld---P~-----~~~A~~~L 917 (1166)
++..+++++|+.+|++++++. |.+..+++.+|.++..+++ +++|+..|++++++. |+ ...++..+
T Consensus 152 ~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLELK----PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 555669999999999999887 7778889999999999998 888999999999886 44 34688889
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|.+|..+|++++|+.+|+++++++|++...+
T Consensus 228 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 228 AYYYTINRDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence 9999999999999999999999999887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-21 Score=211.19 Aligned_cols=291 Identities=15% Similarity=0.099 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDF----LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~----~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
.++.+|.+++..|++++|+..|+++++++|.+ ..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------- 76 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI---------- 76 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----------
Confidence 45678999999999999999999999999998 4788999999999999999999999998753210
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccC------------
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRK------------ 747 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGd------------ 747 (1166)
.........+...+.. +...|++++|+.++++++.+.+.. ..++..+|.++..+|+
T Consensus 77 ----~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3ro2_A 77 ----GDQLGEAKASGNLGNT--LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150 (338)
T ss_dssp ----TCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----
T ss_pred ----cccHHHHHHHHHHHHH--HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhh
Confidence 1111111222222222 235899999999999999886533 4588999999999999
Q ss_pred --------HHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039706 748 --------YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES 819 (1166)
Q Consensus 748 --------yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~ 819 (1166)
+++|+..+++++.+.+.... .......+..+|.+|...|++++|+.++++++.
T Consensus 151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 151 FPEDVRNALQAAVDLYEENLSLVTALGD-------------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCC-------------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999987553211 112233467799999999999999999999743
Q ss_pred CCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhHHH
Q 039706 820 GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE--SHPFAAICFCNRAAAYKALRHITDAI 897 (1166)
Q Consensus 820 ~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~eeAi 897 (1166)
. ..........+..+..+|.++...|++++|+.+|++++.+.+. ..+....++..+|.+|..+|++++|+
T Consensus 212 ~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 212 I--------AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp H--------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred H--------HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 1 1122223444667888999999999999999999999987632 22334778999999999999999999
Q ss_pred HHHHHHHHhCCCh------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 898 ADCNLAIALDGNY------LKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 898 ~~lekALeldP~~------~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.++++++.+.+.. ..++..+|.+|..+|++++|+..|++++++.++
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9999999986543 568999999999999999999999999988654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=234.95 Aligned_cols=249 Identities=11% Similarity=-0.014 Sum_probs=218.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCC
Q 039706 634 AVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSND 713 (1166)
Q Consensus 634 ALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd 713 (1166)
+|.++|++..+|..+|.++..+|++++|+..|+++|.++|++...+..+.. ++ ...|+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~--------------------~l--~~~g~ 146 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRV--------------------LL--KSLQK 146 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH--------------------HH--HHTTC
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHH--------------------HH--HHccc
Confidence 467789999999999999999999999999999999999997554333222 21 23675
Q ss_pred -HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhH
Q 039706 714 -AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLW 792 (1166)
Q Consensus 714 -~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~w 792 (1166)
+++|+..|+++|.++|.+..+|..+|.+|..+|++++|+..|+++|.++|++..+
T Consensus 147 d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a------------------------ 202 (382)
T 2h6f_A 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA------------------------ 202 (382)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH------------------------
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHH------------------------
Confidence 9999999999999999999999999999999999999999999999999976432
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH-cCChHHH-----HHHHHHHH
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ-AGRHSEA-----VEHYTAAL 866 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~-~G~yeEA-----ie~y~kAL 866 (1166)
|..+|.++..+|++++|+.+|++++.. .+....+|..+|.++.. .+.+++| +.+|++||
T Consensus 203 -~~~lg~~~~~~g~~~eAl~~~~~al~l--------------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al 267 (382)
T 2h6f_A 203 -WQHRQWVIQEFKLWDNELQYVDQLLKE--------------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267 (382)
T ss_dssp -HHHHHHHHHHHTCCTTHHHHHHHHHHH--------------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCChHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 567999999999999999999998443 34456778888999999 5555888 59999999
Q ss_pred hccccCCchhHHHHHHHHHHHHHhh--chhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh--------C-HHHHHHHHH
Q 039706 867 SCTVESHPFAAICFCNRAAAYKALR--HITDAIADCNLAIALDGNYLKAISRRATLYEMIR--------D-YDHAASDFH 935 (1166)
Q Consensus 867 el~~e~~p~~a~a~~nlA~ay~~lG--q~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG--------d-yeeAi~~ye 935 (1166)
.++ |.+..+|++++.++..+| ++++|++.+.++ +++|++..++..+|.+|..++ + +++|+..|+
T Consensus 268 ~l~----P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 268 KLV----PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp HHS----TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHC----CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 998 899999999999999988 699999999998 999999999999999999985 3 599999999
Q ss_pred HH-HHHhhhhHHhh
Q 039706 936 RL-IALLTKQIEKS 948 (1166)
Q Consensus 936 kA-LeL~P~~~e~~ 948 (1166)
++ ++++|...+.|
T Consensus 343 ~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 343 ILAKEKDTIRKEYW 356 (382)
T ss_dssp HHHHTTCGGGHHHH
T ss_pred HHHHHhCchhHHHH
Confidence 99 99999887766
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=203.82 Aligned_cols=197 Identities=16% Similarity=0.062 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
+++++++|.+++..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---------- 74 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---------- 74 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----------
Confidence 4567889999999999999999999999999999999999999999999999999999888887776543
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc-----------cCHHHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML-----------RKYEEVIQLCE 756 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l-----------GdyeeAi~~le 756 (1166)
++..+|.++..+ |++++|+..|+
T Consensus 75 ----------------------------------------------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 108 (217)
T 2pl2_A 75 ----------------------------------------------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK 108 (217)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHH
Confidence 333344444443 77777888877
Q ss_pred HHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV 836 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~ 836 (1166)
++++++|++.
T Consensus 109 ~al~~~P~~~---------------------------------------------------------------------- 118 (217)
T 2pl2_A 109 DAERVNPRYA---------------------------------------------------------------------- 118 (217)
T ss_dssp HHHHHCTTCH----------------------------------------------------------------------
T ss_pred HHHHhCcccH----------------------------------------------------------------------
Confidence 7777776542
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
..+..+|.++...|++++|+..|+++++++ .++.+++++|.+|..+|++++|+..|+++++++|+++.++..
T Consensus 119 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 190 (217)
T 2pl2_A 119 ---PLHLQRGLVYALLGERDKAEASLKQALALE-----DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVR 190 (217)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 223344777777788888888888888765 356788889999999999999999999999999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHH
Q 039706 917 RATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~yekAL 938 (1166)
+|.++..+|++++|+..|+++-
T Consensus 191 la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 191 YASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTC---------------
T ss_pred HHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999998888764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-21 Score=210.20 Aligned_cols=271 Identities=10% Similarity=-0.016 Sum_probs=215.6
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG 656 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG 656 (1166)
++.|+..+.+++...|++. .+++.+|.++...|++++|+..|+++++++|.+..++..+|.+|..+|
T Consensus 37 ~~~A~~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 37 LAEAALAFEAVCQAAPERE-------------EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 4555556666666555533 455669999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHH
Q 039706 657 EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLE 736 (1166)
Q Consensus 657 d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~ 736 (1166)
++++|+..|++++...|.+......+...... .......+.. +.....|++++|+..+++++...|.+..++.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 176 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVD------IDDLNVQSED-FFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC---------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH------HHHHHHHHHh-HHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 99999999999999999865433322111000 0000000011 0133578899999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039706 737 MKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816 (1166)
Q Consensus 737 ~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lek 816 (1166)
.+|.++..+|++++|+..+++++...|.+.. .+..+|.+|...|++++|+..+++
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQ-------------------------LWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHH-------------------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999875422 246789999999999999999999
Q ss_pred HhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCch------------hHHHHHHHH
Q 039706 817 HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF------------AAICFCNRA 884 (1166)
Q Consensus 817 Al~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~------------~a~a~~nlA 884 (1166)
++...+ .....+..+|.++...|++++|+.+|++++.+. |. ...+|..+|
T Consensus 232 a~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~l~ 293 (327)
T 3cv0_A 232 ALDINP--------------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ----VGGTTPTGEASREATRSMWDFFR 293 (327)
T ss_dssp HHHHCT--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----TTSCC-----CCTHHHHHHHHHH
T ss_pred HHHcCC--------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CccccccccchhhcCHHHHHHHH
Confidence 754332 235567788999999999999999999999988 55 788999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 885 AAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 885 ~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
.++..+|++++|+..++++++..|+.
T Consensus 294 ~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 294 MLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999999999999988876543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=213.55 Aligned_cols=311 Identities=12% Similarity=0.048 Sum_probs=233.8
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAI------DPDFLRVQVRA 648 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALel------dP~~~~A~~~L 648 (1166)
..++.|+..+.+++...|++.... ..+|+.+|.+|+..|++++|+..|++++.+ .|....++..+
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTL---------SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 345677777777777776643211 245788999999999999999999999987 45567899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCC---------------
Q 039706 649 ANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSND--------------- 713 (1166)
Q Consensus 649 A~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd--------------- 713 (1166)
|.+|..+|++++|+.+|++++.+.|..... ......+...+.++ ...|+
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~~~l~~~~--~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------VGEARALYNLGNVY--HAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------------HHHHHHHHHHHHHH--HHHHHTCC-------CCCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------------cchHHHHHHHHHHH--HHcCCcccccccchhhhhhh
Confidence 999999999999999999999875542110 00111122222221 23466
Q ss_pred -----HHHHHHHHHHHHHh------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 714 -----AEIALGVIDEALFI------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 714 -----~eeALe~lekALel------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
+++|+.++++++.+ .+....++..+|.+|..+|++++|+.++++++.+.+.....
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------- 223 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-------------- 223 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc--------------
Confidence 89999999999887 34456789999999999999999999999999998764321
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
......+..+|.+|...|++++|+.++++++.. ..........+..+..+|.++...|++++|+.+|
T Consensus 224 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 224 -----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLL--------ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 112334677999999999999999999997431 1112223344677888999999999999999999
Q ss_pred HHHHhccccC--CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC------CChHHHHHHHHHHHHHhhCHHHHHHHH
Q 039706 863 TAALSCTVES--HPFAAICFCNRAAAYKALRHITDAIADCNLAIALD------GNYLKAISRRATLYEMIRDYDHAASDF 934 (1166)
Q Consensus 863 ~kALel~~e~--~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld------P~~~~A~~~LA~ay~~lGdyeeAi~~y 934 (1166)
++++.+.+.. .+....++..+|.+|..+|++++|+.++++++++. +....++..+|.+|..+|+...+...+
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 9999886322 34457799999999999999999999999999984 445788999999999999886544444
Q ss_pred HHH
Q 039706 935 HRL 937 (1166)
Q Consensus 935 ekA 937 (1166)
...
T Consensus 371 ~~~ 373 (406)
T 3sf4_A 371 MSE 373 (406)
T ss_dssp ---
T ss_pred HHH
Confidence 433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=209.97 Aligned_cols=262 Identities=11% Similarity=0.047 Sum_probs=210.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHH
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDF-LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQ 693 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~-~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~ 693 (1166)
...++..|+|+.|+..++++...+|++ .++.+.++++|+.+|++++|+..++.. +|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~----------------- 65 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL----------------- 65 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhH-----------------
Confidence 345778999999999999988888887 468899999999999999999877541 22211
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 694 KVSECMQRSAQLLQNKTSNDAEIALGVIDEALFI--SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 694 ~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel--~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
..+..+..++ ...+++++|+..+++++.. +|.++.+++.+|.+|...|++++|+..|++ |.+.
T Consensus 66 ---~a~~~la~~~--~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~----- 130 (291)
T 3mkr_A 66 ---QAVRMFAEYL--ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL----- 130 (291)
T ss_dssp ---HHHHHHHHHH--HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH-----
T ss_pred ---HHHHHHHHHH--cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH-----
Confidence 1112222222 2478999999999999976 599999999999999999999999999987 3221
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ 851 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~ 851 (1166)
..+..+|.+|..+|++++|+..|++++...+... ...........+..
T Consensus 131 --------------------~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~------------~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 131 --------------------ECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT------------LTQLATAWVSLAAG 178 (291)
T ss_dssp --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------------HHHHHHHHHHHHHC
T ss_pred --------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH------------HHHHHHHHHHHHhC
Confidence 1245689999999999999999999865443321 01111111233345
Q ss_pred cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHH-H
Q 039706 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDH-A 930 (1166)
Q Consensus 852 ~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyee-A 930 (1166)
.|++++|+.+|+++++.. |.++.+|+++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++.+ |
T Consensus 179 ~~~~~eA~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKC----SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp TTHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred chHHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 589999999999999987 88899999999999999999999999999999999999999999999999999986 5
Q ss_pred HHHHHHHHHHhhhhHHh
Q 039706 931 ASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 931 i~~yekALeL~P~~~e~ 947 (1166)
..++++++++.|++...
T Consensus 255 ~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 255 NRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhCCCChHH
Confidence 68899999999998664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-20 Score=199.87 Aligned_cols=251 Identities=11% Similarity=-0.054 Sum_probs=177.7
Q ss_pred HHHcCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHH
Q 039706 618 RMALGRMRDALSDCMLAVAID----PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQ 693 (1166)
Q Consensus 618 yl~lG~y~eAI~~fekALeld----P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~ 693 (1166)
+...|++++|+..|+++++.. |.+..+++.+|.+|..+|++++|+.+|+++++++|.+...+..+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l----------- 83 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL----------- 83 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH-----------
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHH-----------
Confidence 334567778888888887763 45567777888888888888888888888888777753322111
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccC
Q 039706 694 KVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANG 773 (1166)
Q Consensus 694 ~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g 773 (1166)
+.+ +...|++++|+.+|++++.+.|.+..++..+|.+|..+|++++|+..+++++.+.|.+...
T Consensus 84 ---------a~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----- 147 (275)
T 1xnf_A 84 ---------GIY--LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR----- 147 (275)
T ss_dssp ---------HHH--HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----
T ss_pred ---------HHH--HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHH-----
Confidence 111 1236778888888888888888888888888888888888888888888888887754210
Q ss_pred cccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC
Q 039706 774 QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853 (1166)
Q Consensus 774 ~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G 853 (1166)
..+..++...|++++|+..+++++...+.. . ....++..+...+
T Consensus 148 ---------------------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~ 191 (275)
T 1xnf_A 148 ---------------------SLWLYLAEQKLDEKQAKEVLKQHFEKSDKE--------------Q-WGWNIVEFYLGNI 191 (275)
T ss_dssp ---------------------HHHHHHHHHHHCHHHHHHHHHHHHHHSCCC--------------S-THHHHHHHHTTSS
T ss_pred ---------------------HHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--------------h-HHHHHHHHHHHhc
Confidence 112223356688888888887764433221 0 0122466677778
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
++++|+..+.+++...+...+....+|..+|.+|..+|++++|+..|++++.++|.+...+ +.++..++++++|+..
T Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDD 268 (275)
T ss_dssp CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHH
Confidence 8889999999998876433345578999999999999999999999999999999775443 7788899999999888
Q ss_pred H
Q 039706 934 F 934 (1166)
Q Consensus 934 y 934 (1166)
|
T Consensus 269 ~ 269 (275)
T 1xnf_A 269 L 269 (275)
T ss_dssp -
T ss_pred H
Confidence 7
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.7e-20 Score=193.22 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=139.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
.+.+|+.+|.+++..|++++|+..|++++..+|.+..+++.+|.+|..+|++++|+..|++++++.|.+...+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----- 96 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG----- 96 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHH-----
Confidence 345678899999999999999999999999999999999999999999999999999999988877763221111
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
...+ +...|++++|+..++++++..|.+..++..+|.++..+|++++|+..+++++.+.|.+
T Consensus 97 ---------------la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 158 (243)
T 2q7f_A 97 ---------------AGNV--YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND- 158 (243)
T ss_dssp ---------------HHHH--HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-
T ss_pred ---------------HHHH--HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-
Confidence 0111 1124556666666666666666555556666666666666666666665555554421
Q ss_pred CCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh
Q 039706 767 PPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG 846 (1166)
Q Consensus 767 ~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG 846 (1166)
...+..+|
T Consensus 159 ------------------------------------------------------------------------~~~~~~l~ 166 (243)
T 2q7f_A 159 ------------------------------------------------------------------------TEARFQFG 166 (243)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 12233456
Q ss_pred HHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR 925 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG 925 (1166)
.++...|++++|+..|++++... |....+|..+|.+|..+|++++|+..|+++++++|++..++..++.+....+
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQD----PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 67777778888888888887776 6677788888888888888888888888888888888888888777665443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-20 Score=230.51 Aligned_cols=247 Identities=13% Similarity=0.004 Sum_probs=195.5
Q ss_pred hcCCCHHHHHHHHHHHH--------HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 709 KTSNDAEIALGVIDEAL--------FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 709 ~~~gd~eeALe~lekAL--------el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
...+++++|++.|++++ +.+|.+..+++.+|.+|+.+|++++|+..|+++++++|++..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a------------ 469 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL------------ 469 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH------------
Confidence 45899999999999999 8999999999999999999999999999999999999976432
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie 860 (1166)
+..+|.+|..+|++++|+..|++++..++ .....+.++|.++...|+|++ +.
T Consensus 470 -------------~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------------~~~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 470 -------------VWYRAVAELLTGDYDSATKHFTEVLDTFP--------------GELAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp -------------HHHHHHHHHHHTCHHHHHHHHHHHHHHST--------------TCSHHHHHHHHHHHHHTCCCT-TC
T ss_pred -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHcCChHH-HH
Confidence 56799999999999999999999855443 335667888999999999999 99
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH-HHHHHHHHH
Q 039706 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA-ASDFHRLIA 939 (1166)
Q Consensus 861 ~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA-i~~yekALe 939 (1166)
+|++|++++ |.+..+|+++|.+|..+|++++|+.+|++|++++|++..+++++|.+|+..++.++| ...+++|++
T Consensus 522 ~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 597 (681)
T 2pzi_A 522 FYQTVWSTN----DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAAR 597 (681)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHH
T ss_pred HHHHHHHhC----CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 999999998 889999999999999999999999999999999999999999999999888876666 677777777
Q ss_pred HhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhHHhhhhccCccchhhhcccCCCCCH--HHHHHHHHHHHhcc
Q 039706 940 LLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSV--ADIKRGYRKAALRH 1012 (1166)
Q Consensus 940 L~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~e~~~rk~~~~dyY~iLGl~~~as~--~eIkkaYrklAlk~ 1012 (1166)
..+..... ..+...+...+..+...+.. ....+||.+||++..... .+|+++||++|..-
T Consensus 598 ~l~~~~~~------~~~~~~l~~~ll~~~l~~~~-------~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~ 659 (681)
T 2pzi_A 598 RVEALPPT------EPRVLQIRALVLGGALDWLK-------DNKASTNHILGFPFTSHGLRLGVEASLRSLARVA 659 (681)
T ss_dssp HHHTSCTT------STTHHHHHHHHHHHHHHHHT-------SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhCCCC------cHHHHHHHHHHHHHHHHHHH-------ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 65443211 11112222233333222221 112349999999766654 77999999999973
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-19 Score=181.40 Aligned_cols=174 Identities=14% Similarity=0.175 Sum_probs=155.4
Q ss_pred ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHH
Q 039706 730 YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEE 809 (1166)
Q Consensus 730 ~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~ee 809 (1166)
+++.+|+.+|.+|..+|+|++|+..|+++++++|++..+ +..+|.+|..+|++++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------------~~~la~~~~~~~~~~~ 57 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET-------------------------LLKLGKTYMDIGLPND 57 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------------------------HHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------------------------HHHHHHHHHHCCCHHH
Confidence 456789999999999999999999999999998876432 4678999999999999
Q ss_pred HHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH
Q 039706 810 AIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA 889 (1166)
Q Consensus 810 Al~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~ 889 (1166)
|+..++++....+ .....+..+|..+...++++.|+..+.+++.+. |.+..++..+|.+|..
T Consensus 58 a~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~----~~~~~~~~~lg~~~~~ 119 (184)
T 3vtx_A 58 AIESLKKFVVLDT--------------TSAEAYYILGSANFMIDEKQAAIDALQRAIALN----TVYADAYYKLGLVYDS 119 (184)
T ss_dssp HHHHHHHHHHHCC--------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc--------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHH
Confidence 9999998744333 234556677999999999999999999999988 8889999999999999
Q ss_pred hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 890 LRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 890 lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+|++++|+..|+++++++|.++.+|+.+|.+|..+|++++|+..|++|++++|++..
T Consensus 120 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 120 MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 999999999999999999999999999999999999999999999999999998754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-18 Score=185.87 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
+.+++.+|.+|+..|++++|+..|+++++ |++..+++.+|.+|.. .+++++|+.+|+++++++
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----------
Confidence 44566677788888888888888888777 6677778888888877 777777777777766532
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH----ccCHHHHHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM----LRKYEEVIQLCEQTF 759 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~----lGdyeeAi~~lekAL 759 (1166)
++.++..+|.+|.. .+++++|+.+|++++
T Consensus 73 -----------------------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 105 (273)
T 1ouv_A 73 -----------------------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC 105 (273)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred -----------------------------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH
Confidence 34455566666666 667777777776666
Q ss_pred HhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCchhhhhhhhccc
Q 039706 760 HFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT----LGRLEEAIAALERHESGNGGKMLESLIPLAGT 835 (1166)
Q Consensus 760 el~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~----lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~ 835 (1166)
+.. +. ..+..+|.+|.. .+++++|+.+|++++...
T Consensus 106 ~~~--~~-------------------------~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------- 144 (273)
T 1ouv_A 106 DLK--YA-------------------------EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-------------- 144 (273)
T ss_dssp HTT--CH-------------------------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------------
T ss_pred HcC--Cc-------------------------cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------------
Confidence 542 10 113456666666 677777777777653311
Q ss_pred hHHHHHHhhhhHHHHH----cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhC
Q 039706 836 VRELLCRKSAGNEAFQ----AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA----LRHITDAIADCNLAIALD 907 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~----~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeld 907 (1166)
....+..+|.++.. .+++++|+.+|+++++.. .+.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 145 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 145 --DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred --cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 13345566777777 888888888888888753 45788889999999 899999999999999886
Q ss_pred CChHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 908 GNYLKAISRRATLYEM----IRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~----lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
| +.+++.+|.+|.. .+++++|+.+|++++++.|.....
T Consensus 217 ~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 217 N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 6 7888999999998 899999999999999887776553
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=184.75 Aligned_cols=207 Identities=15% Similarity=0.155 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF-------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQK 680 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~-------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~ 680 (1166)
..+|+++|.+|+.+|++++|+..|++++.++|.. ..++..+|.+|..+|++++|+.+|++++.+.|...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---- 113 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD---- 113 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH----
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH----
Confidence 4667889999999999999999999999999887 79999999999999999999999999999988610
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 039706 681 IAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFH 760 (1166)
Q Consensus 681 ~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALe 760 (1166)
. ....+++++|+..+++++...|....++..+|.++..+|++++|+..+++++.
T Consensus 114 -----------------~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 114 -----------------I---------LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167 (258)
T ss_dssp -----------------H---------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------H---------HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 0 11246788899999999999999889999999999999999999999999888
Q ss_pred hccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHH
Q 039706 761 FAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELL 840 (1166)
Q Consensus 761 l~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~ 840 (1166)
+.|.+. .
T Consensus 168 ~~~~~~-------------------------------------------------------------------------~ 174 (258)
T 3uq3_A 168 RAPEDA-------------------------------------------------------------------------R 174 (258)
T ss_dssp HCTTCH-------------------------------------------------------------------------H
T ss_pred cCcccH-------------------------------------------------------------------------H
Confidence 776431 1
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC------CChHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD------GNYLKAI 914 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld------P~~~~A~ 914 (1166)
.+..+|.++...|++++|+.+|++++.++ |....+|+.+|.+|..+|++++|+..|+++++++ |.+..++
T Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~ 250 (258)
T 3uq3_A 175 GYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHH
Confidence 12334667777777888888888888777 7778889999999999999999999999999998 8888888
Q ss_pred HHHHHHH
Q 039706 915 SRRATLY 921 (1166)
Q Consensus 915 ~~LA~ay 921 (1166)
..++.++
T Consensus 251 ~~l~~~~ 257 (258)
T 3uq3_A 251 QLYYKAS 257 (258)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 7776653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-17 Score=194.38 Aligned_cols=327 Identities=14% Similarity=0.006 Sum_probs=183.3
Q ss_pred hCcchhHHHHHHHHHhchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHH
Q 039706 590 QEPNLASAETIAAQEACEKWRLSNRAATRMA----LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDA 661 (1166)
Q Consensus 590 ~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~----lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeA 661 (1166)
.++..|..++..|++...+.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.||.+|.. .+++++|
T Consensus 57 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3344445555555555555566666666666 66666666666666553 355666666666666 5566666
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHH----hhhHHhHHHHHHH------------HHHHHHh--hcCCCHHHHHHHHHH
Q 039706 662 SKYFRMCLQSGSDVCVDQKIAVEASDG----LQKAQKVSECMQR------------SAQLLQN--KTSNDAEIALGVIDE 723 (1166)
Q Consensus 662 l~~fekALel~P~n~~a~~~l~Ea~~~----L~k~~~~~e~~~~------------a~~~l~~--~~~gd~eeALe~lek 723 (1166)
+.+|+++++.+ +......+..++.. ..+..++..++.. ++.++.. ...+++++|+.+|++
T Consensus 135 ~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 135 VKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 66666665542 23333333333322 1112222222211 1111110 014566666666666
Q ss_pred HHHhCCChHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccCCCCCccccCccccc----Cccchhhhhhh------
Q 039706 724 ALFISSYSEKLLEMKAEALFM----LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL----DSSESTKHVSF------ 789 (1166)
Q Consensus 724 ALel~P~~~~al~~lA~~y~~----lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l----d~~~~~~~~~~------ 789 (1166)
+++. .++.++..+|.+|.. .+++++|+.+|+++++... ..+...++.++.. .........++
T Consensus 213 a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 213 SATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN--SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 6554 245566666666665 5666666666666655421 1111111100000 00000000000
Q ss_pred -hhHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC---ChHHHHH
Q 039706 790 -RLWRCCLIFKSYFTL-----GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG---RHSEAVE 860 (1166)
Q Consensus 790 -~~wr~~lLA~ay~~l-----Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G---~yeEAie 860 (1166)
....+..+|.+|... +++++|+.+|+++... .....+..+|.+|...| ++++|+.
T Consensus 289 ~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----------------~~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 289 GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----------------GDATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 001134466666665 6666666666665321 12345566788887755 7888888
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH----hhCHHHHHH
Q 039706 861 HYTAALSCTVESHPFAAICFCNRAAAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEM----IRDYDHAAS 932 (1166)
Q Consensus 861 ~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~----lGdyeeAi~ 932 (1166)
+|+++++. .++.+++++|.+|.. .+++++|+.+|++|++.. ++.+++.+|.+|.. .+++++|+.
T Consensus 353 ~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 353 WFRKAAAK------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888874 356788888888888 788888888888888764 57888888888888 788888888
Q ss_pred HHHHHHHHh---hhhHHhh
Q 039706 933 DFHRLIALL---TKQIEKS 948 (1166)
Q Consensus 933 ~yekALeL~---P~~~e~~ 948 (1166)
+|+++++.. |.+....
T Consensus 425 ~~~~A~~~~~~~~~~~~a~ 443 (490)
T 2xm6_A 425 WFDTASTNDMNLFGTENRN 443 (490)
T ss_dssp HHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHCCCCCcCCHHHH
Confidence 888888887 4354443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=184.24 Aligned_cols=258 Identities=16% Similarity=0.150 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 039706 643 RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVID 722 (1166)
Q Consensus 643 ~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~le 722 (1166)
..++.+|.++...|++++|+.+|++++++.|.+.... ...+...+.. +...|++++|+.+++
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------~~~~~~l~~~--~~~~g~~~~A~~~~~ 67 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL----------------SAIYSQLGNA--YFYLHDYAKALEYHH 67 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH----------------HHHHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHH----------------HHHHHHHHHH--HHHcCCHHHHHHHHH
Confidence 4678889999999999999999999999998853211 1111222222 234899999999999
Q ss_pred HHHHh------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHH
Q 039706 723 EALFI------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCL 796 (1166)
Q Consensus 723 kALel------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~l 796 (1166)
+++.+ .|....++..+|.+|..+|++++|+..+++++.+.+..... ....+.+..
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~~~~~~~~ 128 (338)
T 3ro2_A 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------VGEARALYN 128 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------HHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------hHHHHHHHH
Confidence 99887 44557889999999999999999999999999988754321 112334577
Q ss_pred HHHHHHHcCC--------------------HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChH
Q 039706 797 IFKSYFTLGR--------------------LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHS 856 (1166)
Q Consensus 797 LA~ay~~lGd--------------------~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~ye 856 (1166)
+|.+|...|+ +++|+.++++++. ...........+..+..+|.++...|+++
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (338)
T 3ro2_A 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS--------LVTALGDRAAQGRAFGNLGNTHYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH--------HHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH--------HHHhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999 9999999988632 12222334455677888999999999999
Q ss_pred HHHHHHHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHhhCHH
Q 039706 857 EAVEHYTAALSCTVE--SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------LKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 857 EAie~y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------~~A~~~LA~ay~~lGdye 928 (1166)
+|+.+|++++.+.+. ..+....++.++|.+|..+|++++|+..+++++.+.+.. ..++..+|.+|..+|+++
T Consensus 201 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 280 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH
Confidence 999999999987632 223445689999999999999999999999999987655 778999999999999999
Q ss_pred HHHHHHHHHHHHhhhhH
Q 039706 929 HAASDFHRLIALLTKQI 945 (1166)
Q Consensus 929 eAi~~yekALeL~P~~~ 945 (1166)
+|+..|++++++.+...
T Consensus 281 ~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 281 KAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999987653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-18 Score=197.40 Aligned_cols=261 Identities=14% Similarity=0.133 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHH
Q 039706 639 PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIAL 718 (1166)
Q Consensus 639 P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeAL 718 (1166)
+.....++.+|.++...|++++|+.+|++++++.|.+..... .++...+.. +...|++++|+
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------~~~~~lg~~--~~~~g~~~~A~ 106 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLS----------------AIYSQLGNA--YFYLGDYNKAM 106 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHH----------------HHHHHHHHH--HHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHH----------------HHHHHHHHH--HHHCCCHHHHH
Confidence 344567889999999999999999999999999988543111 111122222 22479999999
Q ss_pred HHHHHHHHh------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhH
Q 039706 719 GVIDEALFI------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLW 792 (1166)
Q Consensus 719 e~lekALel------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~w 792 (1166)
.++++++.+ .|....++..+|.+|..+|++++|+.++++++.+.+.... ......
T Consensus 107 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~~~ 167 (411)
T 4a1s_A 107 QYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-------------------RLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------HHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-------------------hHHHHH
Confidence 999999988 5677889999999999999999999999999988654211 011233
Q ss_pred HHHHHHHHHHHcCC-----------------HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 793 RCCLIFKSYFTLGR-----------------LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 793 r~~lLA~ay~~lGd-----------------~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
.+..+|.+|...|+ +++|+.++++++. ....+......+..+..+|.+++..|++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK--------LMRDLGDRGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH--------HHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 45779999999999 9999999988632 2222333455677888999999999999
Q ss_pred HHHHHHHHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHhhCH
Q 039706 856 SEAVEHYTAALSCTVE--SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------LKAISRRATLYEMIRDY 927 (1166)
Q Consensus 856 eEAie~y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------~~A~~~LA~ay~~lGdy 927 (1166)
++|+.+|++++.+.+. .......++.++|.+|..+|++++|+.+|++++.+.+.. ..++..+|.+|..+|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999998732 122334589999999999999999999999999998743 78899999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 039706 928 DHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~ 944 (1166)
++|+.+|++++++.+..
T Consensus 320 ~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 320 NTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 99999999999997765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-17 Score=173.52 Aligned_cols=209 Identities=14% Similarity=0.001 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+|+.+|.+++..|++++|+..|+++++++|.+..++..+|.+|..+|++++|+.+|++++.+.|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------- 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------------
Confidence 3456667888888888888888888888888888888888888887777777777777776655443
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML-RKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l-GdyeeAi~~lekALel~p~n~ 766 (1166)
+..++..+|.++..+ |++++|+..+++++. .|..+
T Consensus 75 -------------------------------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~ 110 (225)
T 2vq2_A 75 -------------------------------------------SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYP 110 (225)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCS
T ss_pred -------------------------------------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCc
Confidence 344556677777778 888888888877776 22211
Q ss_pred CCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh
Q 039706 767 PPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG 846 (1166)
Q Consensus 767 ~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG 846 (1166)
. ....+..+|
T Consensus 111 ~----------------------------------------------------------------------~~~~~~~l~ 120 (225)
T 2vq2_A 111 T----------------------------------------------------------------------PYIANLNKG 120 (225)
T ss_dssp C----------------------------------------------------------------------HHHHHHHHH
T ss_pred c----------------------------------------------------------------------hHHHHHHHH
Confidence 1 112223346
Q ss_pred HHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHhh
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG-NYLKAISRRATLYEMIR 925 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP-~~~~A~~~LA~ay~~lG 925 (1166)
.++...|++++|+.+|++++... |.+..++..+|.++..+|++++|+..+++++.+.| .+..++..++.++...|
T Consensus 121 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 121 ICSAKQGQFGLAEAYLKRSLAAQ----PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 66666777777777777777766 66677888888888888888888888888888888 88888888888888888
Q ss_pred CHHHHHHHHHHHHHHhhhhHHh
Q 039706 926 DYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 926 dyeeAi~~yekALeL~P~~~e~ 947 (1166)
++++|...++.++++.|++...
T Consensus 197 ~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 197 NAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHH
Confidence 8888888888888887776553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-18 Score=189.96 Aligned_cols=245 Identities=11% Similarity=-0.012 Sum_probs=199.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCchhHHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS--GSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel--~P~n~~a~~~l~Ea~~~ 688 (1166)
.+.++.+|+.+|++++|+..++. .+|....++..++..|...+++++|++.|++++.. +|++...+..+
T Consensus 37 ~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~l------ 107 (291)
T 3mkr_A 37 DVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA------ 107 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHH------
T ss_pred HHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHH------
Confidence 34478999999999999998876 36777889999999999999999999999999875 58864322211
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
+.+ +...|++++|+..|++ |.++.++..+|.+|..+|++++|+..+++++..+|+...
T Consensus 108 --------------a~~--~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~- 165 (291)
T 3mkr_A 108 --------------ASI--YFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL- 165 (291)
T ss_dssp --------------HHH--HHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-
T ss_pred --------------HHH--HHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH-
Confidence 111 2247999999999988 899999999999999999999999999999999875310
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHH----HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhh
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIF----KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKS 844 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA----~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~ 844 (1166)
..++ ..+...|++++|+..|++++... +.....+..
T Consensus 166 --------------------------~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--------------p~~~~~~~~ 205 (291)
T 3mkr_A 166 --------------------------TQLATAWVSLAAGGEKLQDAYYIFQEMADKC--------------SPTLLLLNG 205 (291)
T ss_dssp --------------------------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------------CCCHHHHHH
T ss_pred --------------------------HHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--------------CCcHHHHHH
Confidence 1122 22334589999999999974433 334667888
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH-HHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD-AIADCNLAIALDGNYLKAISRRATLYEM 923 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee-Ai~~lekALeldP~~~~A~~~LA~ay~~ 923 (1166)
+|.++...|++++|+..|+++|.++ |.++.+|.++|.++..+|++.+ |..+++++++++|+++.+.- +..+
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~----p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~ 277 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKD----SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAK 277 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHH
Confidence 9999999999999999999999998 9999999999999999999987 56899999999999987653 4566
Q ss_pred hhCHHHHHHHH
Q 039706 924 IRDYDHAASDF 934 (1166)
Q Consensus 924 lGdyeeAi~~y 934 (1166)
.+.|++|+.-|
T Consensus 278 ~~~fd~~~~~~ 288 (291)
T 3mkr_A 278 ENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66677666655
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-18 Score=173.93 Aligned_cols=171 Identities=14% Similarity=0.162 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
+..|+++|.+|..+|+|++|+..|+++|+++|++..++..+|.+|..+|++++|+..+.+++...|.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------------- 71 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------------- 71 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-------------
Confidence 4568889999999999999999999999999999999999999999999999998888887766555
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
...++..+|.++...++++.|+..+.+++.+.|.+..
T Consensus 72 -------------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 108 (184)
T 3vtx_A 72 -------------------------------------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYAD 108 (184)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -------------------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 3445556667777777777777777777766654311
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
.+..+|.
T Consensus 109 -------------------------------------------------------------------------~~~~lg~ 115 (184)
T 3vtx_A 109 -------------------------------------------------------------------------AYYKLGL 115 (184)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1122355
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
++...|++++|++.|+++++++ |.++.+|+++|.+|..+|++++|+.+|++||+++|+++
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 116 VYDSMGEHDKAIEAYEKTISIK----PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHhCCchhHHHHHHHHHHhc----chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 6666666666666777777666 66677777777777777777777777777777777654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-18 Score=182.51 Aligned_cols=209 Identities=18% Similarity=0.098 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+|+.+|.+|+..|++++|+..|++++.++|.+..+++.+|.+|...|++++|+.+|++++++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------
Confidence 46678888888888888888888888888888888888888888888887777777777665543
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
|.+..++..+|.+|..+|++++|+.++++++. .+..
T Consensus 102 -----------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~-- 137 (252)
T 2ho1_A 102 -----------------------------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLY-- 137 (252)
T ss_dssp -----------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTC--
T ss_pred -----------------------------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccC--
Confidence 33455677788888888888888888877765 1111
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
+.....+..+|.
T Consensus 138 --------------------------------------------------------------------~~~~~~~~~la~ 149 (252)
T 2ho1_A 138 --------------------------------------------------------------------PERSRVFENLGL 149 (252)
T ss_dssp --------------------------------------------------------------------TTHHHHHHHHHH
T ss_pred --------------------------------------------------------------------cccHHHHHHHHH
Confidence 011222334577
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
++...|++++|+.+|++++.+. |....++..+|.+|..+|++++|+..+++++...|.+..++..++.+|..+|++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLN----RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH
Confidence 7777888888888888888877 677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHh
Q 039706 928 DHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~ 947 (1166)
++|+..+++++++.|++...
T Consensus 226 ~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 226 DTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHHHHCCCCHHH
Confidence 99999999999998887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-19 Score=210.11 Aligned_cols=216 Identities=11% Similarity=0.020 Sum_probs=183.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHH
Q 039706 622 GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEI-EDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQ 700 (1166)
Q Consensus 622 G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~-eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~ 700 (1166)
.++++|+..+.+++...|....+++.+|.+|..+|++ ++|+.+|+++++++|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--------------------------- 134 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--------------------------- 134 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT---------------------------
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC---------------------------
Confidence 3467777778877778888888888888888888888 888887777666554
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 701 RSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 701 ~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
.++.++..+|.+|..+|++++|+.+|+++++++|+ .
T Consensus 135 -----------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~-------------- 170 (474)
T 4abn_A 135 -----------------------------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K-------------- 170 (474)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--------------
T ss_pred -----------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--------------
Confidence 45567788899999999999999999999988764 1
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTL---------GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ 851 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~l---------Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~ 851 (1166)
..+..+|.+|..+ |++++|+..|++++... +.....+..+|.+|..
T Consensus 171 -----------~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~ 225 (474)
T 4abn_A 171 -----------VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------------VLDGRSWYILGNAYLS 225 (474)
T ss_dssp -----------HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHH
Confidence 1245688888888 99999999999985433 3345677888999999
Q ss_pred c--------CChHHHHHHHHHHHhccccCCc---hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 852 A--------GRHSEAVEHYTAALSCTVESHP---FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 852 ~--------G~yeEAie~y~kALel~~e~~p---~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
. |++++|+.+|++|+.++ | .++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus 226 ~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 301 (474)
T 4abn_A 226 LYFNTGQNPKISQQALSAYAQAEKVD----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301 (474)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHC----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhccccchHHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9 99999999999999998 7 8999999999999999999999999999999999999999999999
Q ss_pred HHHhhCHHHHHHHHHHH
Q 039706 921 YEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 921 y~~lGdyeeAi~~yekA 937 (1166)
+..+|++++|+..+.++
T Consensus 302 ~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999876543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-17 Score=177.91 Aligned_cols=249 Identities=13% Similarity=-0.015 Sum_probs=192.2
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG 656 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG 656 (1166)
++.|+..+.++++..+... +....+|+.+|.+|+..|++++|+..|++++.++|.+..++..+|.+|..+|
T Consensus 21 ~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 21 QEVILARMEQILASRALTD---------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccccC---------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 4556666666655432111 1234567889999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHH
Q 039706 657 EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLE 736 (1166)
Q Consensus 657 d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~ 736 (1166)
++++|+.+|+++++++|.+...+..+ +.+ +...|++++|+..|++++.+.|.+.....
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~l--------------------a~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNR--------------------GIA--LYYGGRDKLAQDDLLAFYQDDPNDPFRSL 149 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHH--------------------HHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHH--------------------HHH--HHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999864322221 111 22479999999999999999999987776
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039706 737 MKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816 (1166)
Q Consensus 737 ~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lek 816 (1166)
..+.+ ...|++++|+..+.+++...|.+.. ...++.++...++.++|+..+++
T Consensus 150 ~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 150 WLYLA-EQKLDEKQAKEVLKQHFEKSDKEQW--------------------------GWNIVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp HHHHH-HHHHCHHHHHHHHHHHHHHSCCCST--------------------------HHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHH-HHhcCHHHHHHHHHHHHhcCCcchH--------------------------HHHHHHHHHHhcCHHHHHHHHHH
Confidence 66544 6779999999999999998775432 12366778888999999999998
Q ss_pred HhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHH
Q 039706 817 HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896 (1166)
Q Consensus 817 Al~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeA 896 (1166)
++...+. ..+.....+..+|.++...|++++|+.+|++++.++ |.+.. ..+.++..+|++++|
T Consensus 203 ~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~---~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 203 DATDNTS----------LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN----VHNFV---EHRYALLELSLLGQD 265 (275)
T ss_dssp HCCSHHH----------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CTTCH---HHHHHHHHHHHHHHC
T ss_pred Hhccccc----------ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----chhHH---HHHHHHHHHHHHHhh
Confidence 7332111 122336778889999999999999999999999987 54433 347789999999999
Q ss_pred HHHH
Q 039706 897 IADC 900 (1166)
Q Consensus 897 i~~l 900 (1166)
+..|
T Consensus 266 ~~~~ 269 (275)
T 1xnf_A 266 QDDL 269 (275)
T ss_dssp ----
T ss_pred HHHH
Confidence 9988
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=187.20 Aligned_cols=240 Identities=11% Similarity=-0.026 Sum_probs=168.3
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF----LRVQVRAANC 651 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~----~~A~~~LA~l 651 (1166)
.++.|+..+.++++.+|++.. +++++|.+|+.+|++++|+..|++++. .|.+ ..+|..+|.+
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~-------------~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPY-------------IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCST-------------THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHH-------------HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 456666667777766666543 456699999999999999999999999 4433 5669999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh
Q 039706 652 HLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS 731 (1166)
Q Consensus 652 yl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~ 731 (1166)
|..+|++++|+.+|+++++++|.+...+..+ +.+ +...|++++|+.+|++++.+.|.+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l--------------------~~~--~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI--------------------GSY--FYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH--------------------HHH--HHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHH--------------------HHH--HHHccCHHHHHHHHHHHhhcCCCc
Confidence 9999999999999999998888753321111 111 123567777777777777777777
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHH
Q 039706 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAI 811 (1166)
Q Consensus 732 ~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl 811 (1166)
+.++..+|..++..+++++|+..+++++++.|.+
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---------------------------------------------- 175 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI---------------------------------------------- 175 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc----------------------------------------------
Confidence 7777777744444457777777777776666543
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCC---hHHHHHHHHHHHhccccCC----chhHHHHHHHH
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGR---HSEAVEHYTAALSCTVESH----PFAAICFCNRA 884 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~---yeEAie~y~kALel~~e~~----p~~a~a~~nlA 884 (1166)
...+..+|.++...++ +++|+..|++++++..... .....+|..+|
T Consensus 176 ---------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 176 ---------------------------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp ---------------------------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred ---------------------------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 1222333555555566 7777777777777642111 12347889999
Q ss_pred HHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 885 AAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 885 ~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
.+|..+|++++|+.+|+++++++|++..++-.++.+....
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9999999999999999999999999999999888776543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-17 Score=175.22 Aligned_cols=197 Identities=12% Similarity=-0.028 Sum_probs=150.4
Q ss_pred hhCcchhHHHHHHHHHhch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 039706 589 KQEPNLASAETIAAQEACE--KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFR 666 (1166)
Q Consensus 589 k~ep~~A~a~~~aAIe~~e--~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fe 666 (1166)
..+++.|...+..+++..+ ..+++.+|.+|...|++++|+..|+++++++|.+..++..+|.+|..+|++++|+.+|+
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 129 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456778888888887654 57799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc
Q 039706 667 MCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 667 kALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG 746 (1166)
+++. .+ ..|....++..+|.++..+|
T Consensus 130 ~~~~-~~-----------------------------------------------------~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 130 EASQ-DT-----------------------------------------------------LYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHTT-CT-----------------------------------------------------TCTTHHHHHHHHHHHHHHTT
T ss_pred HHHh-Cc-----------------------------------------------------cCcccHHHHHHHHHHHHHcC
Confidence 8876 11 22344566777888888888
Q ss_pred CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh
Q 039706 747 KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML 826 (1166)
Q Consensus 747 dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l 826 (1166)
++++|+..+++++...|.+..
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~----------------------------------------------------------- 176 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPS----------------------------------------------------------- 176 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHH-----------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhcCcccHH-----------------------------------------------------------
Confidence 888888888888877664311
Q ss_pred hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 827 ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 827 e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
.+..+|.++...|++++|+.+|++++... |....++..++.++..+|++++|+..+++++++
T Consensus 177 --------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 177 --------------VALEMADLLYKEREYVPARQYYDLFAQGG----GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp --------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11223555556666666666666666655 556667777777777777777777777777777
Q ss_pred CCChHHHHHH
Q 039706 907 DGNYLKAISR 916 (1166)
Q Consensus 907 dP~~~~A~~~ 916 (1166)
.|+++.++..
T Consensus 239 ~p~~~~~~~~ 248 (252)
T 2ho1_A 239 YPGSLEYQEF 248 (252)
T ss_dssp CTTSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 7777665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-18 Score=181.84 Aligned_cols=197 Identities=10% Similarity=0.005 Sum_probs=171.8
Q ss_pred hcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhh
Q 039706 709 KTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVS 788 (1166)
Q Consensus 709 ~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~ 788 (1166)
...|++++|+..|++++...|.+..++..+|.++..+|++++|+..+++++.+.|.+.
T Consensus 34 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------- 91 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA---------------------- 91 (243)
T ss_dssp --------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------------------
T ss_pred HHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch----------------------
Confidence 3579999999999999999999999999999999999999999999999999977542
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhc
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel 868 (1166)
..+..+|.+|...|++++|+..+++++...+. ....+..+|.++...|++++|+.+|++++.+
T Consensus 92 ---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 92 ---TAYYGAGNVYVVKEMYKEAKDMFEKALRAGME--------------NGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC--------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 12466899999999999999999997543332 2445777899999999999999999999998
Q ss_pred cccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 869 TVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 869 ~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
. |....++..+|.++..+|++++|+..+++++.++|.++.++..+|.+|..+|++++|+..|++++++.|++....
T Consensus 155 ~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 155 N----ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp C----TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred C----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 8 778899999999999999999999999999999999999999999999999999999999999999999887654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-18 Score=196.04 Aligned_cols=259 Identities=11% Similarity=0.019 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAI------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALel------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
..++.+|..++..|+|++|+..|++|+.+ .+..+.++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------- 176 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH------- 176 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------
Confidence 34566999999999999999999999987 23356889999999999999999999999988754331
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 039706 683 VEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 683 ~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~ 762 (1166)
+++ .+....++..+|.+|..+|++++|+.++++++.+.
T Consensus 177 -----------------------------~~~-------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 214 (383)
T 3ulq_A 177 -----------------------------EAY-------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA 214 (383)
T ss_dssp -----------------------------STT-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------ccc-------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 110 01123567889999999999999999999999987
Q ss_pred cCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHH
Q 039706 763 EKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCR 842 (1166)
Q Consensus 763 p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l 842 (1166)
+..... ......+..+|.+|..+|++++|+.++++++.. .......+..+..+
T Consensus 215 ~~~~~~-------------------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 215 EAEKQP-------------------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV--------FEESNILPSLPQAY 267 (383)
T ss_dssp HHTTCH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHTTCGGGHHHHH
T ss_pred HHcCCh-------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------HHhhccchhHHHHH
Confidence 754321 112334577999999999999999999997431 11112224557788
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhcccc-CCchhHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVE-SHPFAAICFCNRAAAYKALRH---ITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e-~~p~~a~a~~nlA~ay~~lGq---~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
..+|.++...|++++|+.+|++++.+.+. ..+.....+..+|.+|...|+ +.+|+..++++ ...|....++..+|
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 89999999999999999999999987532 124444456789999999998 88888888876 44456677899999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.+|..+|++++|+.+|++++++..+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999886543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-18 Score=185.29 Aligned_cols=260 Identities=15% Similarity=0.034 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAI--------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALel--------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
+|+.+|.+|+..|++++|+..|++++++ .|....++..+|.+|..+|++++|+.+|++++.+...
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------- 101 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK------- 101 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------
Confidence 4566999999999999999999999995 6777899999999999999999999999998763100
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 039706 682 AVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEAL-FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFH 760 (1166)
Q Consensus 682 l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekAL-el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALe 760 (1166)
.. ...|....++..+|.+|..+|++++|+.++++++.
T Consensus 102 ------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 102 ------------------------------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp ------------------------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ------------------------------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 00 01233456788899999999999999999999998
Q ss_pred hccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh--ccchHH
Q 039706 761 FAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL--AGTVRE 838 (1166)
Q Consensus 761 l~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L--~~~~~~ 838 (1166)
+....... +. ....+.+..+|.+|...|++++|+.++++++.. .... ...+..
T Consensus 140 ~~~~~~~~----------~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~ 194 (311)
T 3nf1_A 140 IREKVLGK----------DH-------PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI--------YQTKLGPDDPNV 194 (311)
T ss_dssp HHHHHHCT----------TC-------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------HHHTSCTTCHHH
T ss_pred HHHHhcCC----------CC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHhCCCCHHH
Confidence 75221000 00 112234567999999999999999999997431 1111 124456
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc-----CCch------hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE-----SHPF------AAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e-----~~p~------~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
...+..+|.++...|++++|+.+|++++.+.+. ..+. ....+..++..+...+.+.+|+..+.+++...
T Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 274 (311)
T 3nf1_A 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS 274 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC
Confidence 777888999999999999999999999986421 1122 23344445555667778888999999999999
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
|..+.++..+|.+|..+|++++|+..|++++++.|+
T Consensus 275 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-17 Score=174.79 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDP-DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP-~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
++.+|+++|.+++..|+|++|+..|+++++++| .+..+++.+|.++..+|++++|+.+|+++++++|
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------ 73 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY------------ 73 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc------------
Confidence 346778888889999999999999999998888 8888888888888888888888888877665554
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
.+..++..+|.+|..+|++++|+..+++++++.|++
T Consensus 74 --------------------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 74 --------------------------------------------NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN 109 (228)
T ss_dssp --------------------------------------------SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred --------------------------------------------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 455677888999999999999999999999998865
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-18 Score=182.37 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=126.6
Q ss_pred ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHH
Q 039706 730 YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEE 809 (1166)
Q Consensus 730 ~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~ee 809 (1166)
.++.++..+|.++...|++++|+..|+++++++|++..+ +..+|.++...|++++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-------------------------~~~lg~~~~~~g~~~~ 57 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA-------------------------LYWLARTQLKLGLVNP 57 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH-------------------------HHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------------------------HHHHHHHHHHcCCHHH
Confidence 334445555555555555555555555555554443221 2334555555555555
Q ss_pred HHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc-----------CChHHHHHHHHHHHhccccCCchhHH
Q 039706 810 AIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA-----------GRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 810 Al~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~-----------G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
|+..|++++... +.....+..+|.++... |++++|+..|+++++++ |.++.
T Consensus 58 A~~~~~~al~~~--------------P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----P~~~~ 119 (217)
T 2pl2_A 58 ALENGKTLVART--------------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN----PRYAP 119 (217)
T ss_dssp HHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC----TTCHH
T ss_pred HHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC----cccHH
Confidence 555555542221 22233344445555555 99999999999999998 88999
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+|+++|.+|..+|++++|+..|+++++++ +++.+++.+|.+|..+|++++|+..|++++++.|++....
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 188 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999999999999999 9999999999999999999999999999999999887654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=182.57 Aligned_cols=292 Identities=14% Similarity=0.024 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFL-----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~-----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
.++..+|.+++..|++++|+..+++++...|... .++..+|.+|...|++++|+..+++++.+.|......
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 90 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---- 90 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH----
Confidence 4467789999999999999999999999887552 3688999999999999999999999998754321110
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC--------CChHHHHHHHHHHHHHccCHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS--------SYSEKLLEMKAEALFMLRKYEEVIQLC 755 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~--------P~~~~al~~lA~~y~~lGdyeeAi~~l 755 (1166)
.......... ..+...|++++|+.++++++.+. |....++..+|.++..+|++++|+.++
T Consensus 91 ----------~~~~~~~~la--~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 91 ----------YALWSLIQQS--EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158 (373)
T ss_dssp ----------HHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------HHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 0001111111 12335899999999999999875 345677888999999999999999999
Q ss_pred HHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccc
Q 039706 756 EQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGT 835 (1166)
Q Consensus 756 ekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~ 835 (1166)
++++.+.+..... . ....+..+|.++...|++++|+.++++++....... . ..
T Consensus 159 ~~al~~~~~~~~~-------------~-------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~------~-~~ 211 (373)
T 1hz4_A 159 RSGIEVLSSYQPQ-------------Q-------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK------Y-HS 211 (373)
T ss_dssp HHHHHHTTTSCGG-------------G-------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC------C-CH
T ss_pred HHHHHHhhccCcH-------------H-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC------c-ch
Confidence 9999987753211 0 112356789999999999999999999753211100 0 00
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC------
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN------ 909 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~------ 909 (1166)
.........++.++...|++++|+.++.+++...+.........+..+|.++..+|++++|+..+++++...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 291 (373)
T 1hz4_A 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh
Confidence 01111222345668899999999999999998663322233446788999999999999999999999987542
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 910 YLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 910 ~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
...++..+|.+|..+|++++|...|++++.+.+.
T Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 292 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 2358889999999999999999999999988664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-16 Score=184.88 Aligned_cols=286 Identities=10% Similarity=-0.031 Sum_probs=180.7
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 039706 597 AETIAAQEACEKWRLSNRAATRMA----LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDASKYFRMC 668 (1166)
Q Consensus 597 a~~~aAIe~~e~~ay~nrA~ayl~----lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeAl~~fekA 668 (1166)
..+..+.+.-.+.+++.+|.+|.. .+++++|+..|+++++. .++.+++.||.+|.. .+++++|+.+|+++
T Consensus 28 ~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 105 (490)
T 2xm6_A 28 EQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA 105 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 344455566677888889999999 99999999999999986 689999999999999 99999999999999
Q ss_pred HHcCCCchhHHHHHHHHHHH----hhhHHhHHHHHHHH------------HHHHHh--hcCCCHHHHHHHHHHHHHhCCC
Q 039706 669 LQSGSDVCVDQKIAVEASDG----LQKAQKVSECMQRS------------AQLLQN--KTSNDAEIALGVIDEALFISSY 730 (1166)
Q Consensus 669 Lel~P~n~~a~~~l~Ea~~~----L~k~~~~~e~~~~a------------~~~l~~--~~~gd~eeALe~lekALel~P~ 730 (1166)
++.. +......+..++.. ..+..++..++..+ +.++.. ...+++++|+.+|+++++. .
T Consensus 106 ~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~ 181 (490)
T 2xm6_A 106 ALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--G 181 (490)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 9864 44455555555443 23333333333322 222221 1268999999999999886 5
Q ss_pred hHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHH---
Q 039706 731 SEKLLEMKAEALFM----LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT--- 803 (1166)
Q Consensus 731 ~~~al~~lA~~y~~----lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~--- 803 (1166)
++.++..+|.+|.. .+++++|+.+|+++++... +.+ +..+|.+|..
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a-------------------------~~~lg~~y~~g~g 234 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD--ELG-------------------------QLHLADMYYFGIG 234 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHH-------------------------HHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC--HHH-------------------------HHHHHHHHHcCCC
Confidence 78999999999999 9999999999999987532 111 2345555555
Q ss_pred -cCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH----cCChHHHHHHHHHHHhccccCCchhHH
Q 039706 804 -LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ----AGRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 804 -lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~----~G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
.+++++|+.+|+++.... ....+..+|.++.. .+++++|+.+|+++++. .++.
T Consensus 235 ~~~~~~~A~~~~~~a~~~~----------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~------~~~~ 292 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQG----------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ------GNSD 292 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTT----------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT------TCHH
T ss_pred CCCCHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc------CCHH
Confidence 566666666666653211 11223334444444 44455555555544432 1233
Q ss_pred HHHHHHHHHHHh-----hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh---CHHHHHHHHHHHHH
Q 039706 879 CFCNRAAAYKAL-----RHITDAIADCNLAIALDGNYLKAISRRATLYEMIR---DYDHAASDFHRLIA 939 (1166)
Q Consensus 879 a~~nlA~ay~~l-----Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG---dyeeAi~~yekALe 939 (1166)
+++++|.+|... +++++|+.+|+++++. .++.+++.+|.+|...| ++++|+.+|+++++
T Consensus 293 a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 293 GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 444444444444 4444455554444443 23344444444444422 44444444444444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=214.62 Aligned_cols=179 Identities=18% Similarity=0.190 Sum_probs=164.2
Q ss_pred hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCC
Q 039706 727 ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGR 806 (1166)
Q Consensus 727 l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd 806 (1166)
..|++++++.++|.+|..+|++++|+.+|+++++++|++..+ +..+|.+|..+|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a-------------------------~~nLg~~l~~~g~ 58 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA-------------------------HSNLASVLQQQGK 58 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH-------------------------HHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------------------------HHHHHHHHHHcCC
Confidence 468999999999999999999999999999999999976432 5679999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHH
Q 039706 807 LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAA 886 (1166)
Q Consensus 807 ~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~a 886 (1166)
+++|+.+|++++.. .+..+.++.++|.++...|++++|+++|++||+++ |.++.+|+++|.+
T Consensus 59 ~~eA~~~~~~Al~l--------------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~----P~~~~a~~~Lg~~ 120 (723)
T 4gyw_A 59 LQEALMHYKEAIRI--------------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSNLASI 120 (723)
T ss_dssp HHHHHHHHHHHHHH--------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Confidence 99999999998543 34457788899999999999999999999999998 8999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 887 YKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 887 y~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|..+|++++|+..|++||+++|+++.++.++|.+|..++++++|++.|++++++.|+..+..
T Consensus 121 ~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~~~ 182 (723)
T 4gyw_A 121 HKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKN 182 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999987653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=179.34 Aligned_cols=217 Identities=11% Similarity=0.001 Sum_probs=170.7
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
...+..++++|..++..|+|++|+..|++++..+|.+ ..+++.+|.+|+.+|++++|+..|++++++.|++
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~------ 85 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID------ 85 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC------
Confidence 3445667889999999999999999999999999988 8899999999999999999999999998888762
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH--------ccCHHHHHH
Q 039706 682 AVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM--------LRKYEEVIQ 753 (1166)
Q Consensus 682 l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~--------lGdyeeAi~ 753 (1166)
|..+.+++.+|.+++. +|++++|+.
T Consensus 86 -----------------------------------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~ 118 (261)
T 3qky_A 86 -----------------------------------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIE 118 (261)
T ss_dssp -----------------------------------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHH
T ss_pred -----------------------------------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence 2334667888899998 999999999
Q ss_pred HHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhc
Q 039706 754 LCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLA 833 (1166)
Q Consensus 754 ~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~ 833 (1166)
.|++++...|++..+ . .|+..+...
T Consensus 119 ~~~~~l~~~p~~~~~-------------------------~--------------~a~~~~~~~---------------- 143 (261)
T 3qky_A 119 AFQLFIDRYPNHELV-------------------------D--------------DATQKIREL---------------- 143 (261)
T ss_dssp HHHHHHHHCTTCTTH-------------------------H--------------HHHHHHHHH----------------
T ss_pred HHHHHHHHCcCchhH-------------------------H--------------HHHHHHHHH----------------
Confidence 999999999876432 0 000001110
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh----------hchhHHHHHHHHH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL----------RHITDAIADCNLA 903 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l----------Gq~eeAi~~lekA 903 (1166)
.......++.+|.+|+..|+|++|+..|++++...|.. +....+++.+|.+|..+ |++++|+..|+++
T Consensus 144 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 144 -RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT-PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 00112235667999999999999999999999987332 34678999999999988 9999999999999
Q ss_pred HHhCCChH---HHHHHHHHHHHHhhCHHHHH
Q 039706 904 IALDGNYL---KAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 904 LeldP~~~---~A~~~LA~ay~~lGdyeeAi 931 (1166)
++.+|+++ .++..++.++..+++++++.
T Consensus 222 ~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 222 LQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999884 56666777777777665543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=190.33 Aligned_cols=331 Identities=11% Similarity=-0.007 Sum_probs=219.6
Q ss_pred hHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 039706 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYF 665 (1166)
Q Consensus 586 ~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~f 665 (1166)
+++..+|.+..+... ++. +...|++++|...|+++++..|.+..+|..++.++...|++++|...|
T Consensus 4 ~al~~~P~~~~~w~~-------------l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~ 69 (530)
T 2ooe_A 4 KKLEENPYDLDAWSI-------------LIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLF 69 (530)
T ss_dssp HHHHHCTTCHHHHHH-------------HHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHhhhCCCCHHHHHH-------------HHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 455566665544444 565 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchhHHHHHHHHH-HHhhhHHhH---------------------HHHHHHHHHHHHh-------hcCCCHHH
Q 039706 666 RMCLQSGSDVCVDQKIAVEAS-DGLQKAQKV---------------------SECMQRSAQLLQN-------KTSNDAEI 716 (1166)
Q Consensus 666 ekALel~P~n~~a~~~l~Ea~-~~L~k~~~~---------------------~e~~~~a~~~l~~-------~~~gd~ee 716 (1166)
++++...|+ ...+..+.... ........+ ...+..+..+... ...++++.
T Consensus 70 ~ral~~~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 148 (530)
T 2ooe_A 70 QRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITA 148 (530)
T ss_dssp HHHTTTCCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHH
T ss_pred HHHHhcCCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHH
Confidence 999999995 33333332211 111111110 1122222222211 01578999
Q ss_pred HHHHHHHHHHhCCChH--HHHHHHHHHH-------------HHccCHHHHHHHHHH------HHHh-----ccCCC----
Q 039706 717 ALGVIDEALFISSYSE--KLLEMKAEAL-------------FMLRKYEEVIQLCEQ------TFHF-----AEKNS---- 766 (1166)
Q Consensus 717 ALe~lekALel~P~~~--~al~~lA~~y-------------~~lGdyeeAi~~lek------ALel-----~p~n~---- 766 (1166)
|+..|++++. .|... .+|...+... ...++|.+|...+.. .++. .|...
T Consensus 149 a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 149 VRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 9999999999 56532 3333222211 124567777766655 2221 11100
Q ss_pred ---CCccccCcccccCcc---ch----hh--hhh--------hhhHHHHHHHHHHHH-------cCCHH-------HHHH
Q 039706 767 ---PPLDANGQSMELDSS---ES----TK--HVS--------FRLWRCCLIFKSYFT-------LGRLE-------EAIA 812 (1166)
Q Consensus 767 ---~a~~~~g~~l~ld~~---~~----~~--~~~--------~~~wr~~lLA~ay~~-------lGd~e-------eAl~ 812 (1166)
..|..+......++. .. .. ..+ .....|..+|..+.. .|+++ +|+.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 000000000000000 00 00 000 012234557777765 79987 9999
Q ss_pred HHHHHhc-CCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhH-HHHHHHHHHHHHh
Q 039706 813 ALERHES-GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA-ICFCNRAAAYKAL 890 (1166)
Q Consensus 813 ~lekAl~-~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a-~a~~nlA~ay~~l 890 (1166)
.|++++. ..+ .....+..+|..+...|++++|+..|++++++. |.+. .+|.+++.++..+
T Consensus 308 ~~~~Al~~~~p--------------~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 308 IYERAISTLLK--------------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE----DIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp HHHHHTTTTCS--------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS----SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc--------------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc----ccCchHHHHHHHHHHHHh
Confidence 9999854 222 335567778999999999999999999999987 5553 6999999999999
Q ss_pred hchhHHHHHHHHHHHhCCChHHHHHHHHHH-HHHhhCHHHHHHHHHHHHHHhhhhHHhhcc
Q 039706 891 RHITDAIADCNLAIALDGNYLKAISRRATL-YEMIRDYDHAASDFHRLIALLTKQIEKSNQ 950 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP~~~~A~~~LA~a-y~~lGdyeeAi~~yekALeL~P~~~e~~~~ 950 (1166)
|++++|+..|++|++..|.....+...+.+ +...|++++|+..|+++++..|++.+.+..
T Consensus 370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~ 430 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA 430 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999888888777766 446999999999999999999998776643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-17 Score=181.37 Aligned_cols=238 Identities=10% Similarity=-0.009 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 039706 625 RDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQ 704 (1166)
Q Consensus 625 ~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~ 704 (1166)
++|+..|+++|.++|.++.+|+.+|.++...++. +...-+ ..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~----------l~~~g~-----------------~~----------- 74 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL----------LAEKGD-----------------MN----------- 74 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HHHTSC-----------------CH-----------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----------hhhccc-----------------hh-----------
Confidence 7899999999999999999999999998765321 000000 00
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccch
Q 039706 705 LLQNKTSNDAEIALGVIDEALF-ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSES 783 (1166)
Q Consensus 705 ~l~~~~~gd~eeALe~lekALe-l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~ 783 (1166)
...+.+++|+..|++|+. +.|.+..+|..+|.++..+|++++|+..|++++++.|.+..
T Consensus 75 ----~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------------- 134 (308)
T 2ond_A 75 ----NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---------------- 134 (308)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH----------------
T ss_pred ----hcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc----------------
Confidence 001234677777777777 57777788888888888888888888888888877665421
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH-HcCChHHHHHHH
Q 039706 784 TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF-QAGRHSEAVEHY 862 (1166)
Q Consensus 784 ~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~-~~G~yeEAie~y 862 (1166)
. .|..++.++...|++++|+..|++++...+.. ...+...+...+ ..|++++|+.+|
T Consensus 135 ------~--~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--------------~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 135 ------L--VYIQYMKFARRAEGIKSGRMIFKKAREDARTR--------------HHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp ------H--HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--------------THHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred ------H--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--------------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 13456777778888888888888876544321 122222233322 269999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh---CCC-hHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 863 TAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL---DGN-YLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel---dP~-~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
+++|++. |.++.+|.++|.++..+|++++|+..|++++.. .|+ ...+|..++..+...|++++|...+++++
T Consensus 193 ~~al~~~----p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 193 ELGLKKY----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998 888999999999999999999999999999995 554 78899999999999999999999999999
Q ss_pred HHhhhhHH
Q 039706 939 ALLTKQIE 946 (1166)
Q Consensus 939 eL~P~~~e 946 (1166)
++.|++.+
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 99998654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-17 Score=194.12 Aligned_cols=193 Identities=17% Similarity=0.136 Sum_probs=175.7
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 712 NDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKY-EEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 712 gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdy-eeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
..+++|+..+++++...|..+.+++.+|.+|..+|+| ++|+.+|+++++++|.+..
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~----------------------- 138 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE----------------------- 138 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH-----------------------
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH-----------------------
Confidence 4477888899999999999999999999999999999 9999999999999886532
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc---------CChHHHHHH
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA---------GRHSEAVEH 861 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~---------G~yeEAie~ 861 (1166)
.+..+|.+|+..|++++|+.+|++++...+. ...+..+|.++... |++++|+.+
T Consensus 139 --a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~ 201 (474)
T 4abn_A 139 --AWNQLGEVYWKKGDVTSAHTCFSGALTHCKN---------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201 (474)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC---------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHH
Confidence 2567999999999999999999998554432 35677789999999 999999999
Q ss_pred HHHHHhccccCCchhHHHHHHHHHHHHHh--------hchhHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHhhCHHHH
Q 039706 862 YTAALSCTVESHPFAAICFCNRAAAYKAL--------RHITDAIADCNLAIALDG---NYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 862 y~kALel~~e~~p~~a~a~~nlA~ay~~l--------Gq~eeAi~~lekALeldP---~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
|++|++++ |.++.+|+++|.+|..+ |++++|+.+|++|++++| .++.+|+.+|.+|..+|++++|
T Consensus 202 ~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A 277 (474)
T 4abn_A 202 AKLAVQMD----VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEA 277 (474)
T ss_dssp HHHHHHHC----TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhC----CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999998 88999999999999999 999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHhh
Q 039706 931 ASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 931 i~~yekALeL~P~~~e~~ 948 (1166)
+..|++++++.|++.+.+
T Consensus 278 ~~~~~~al~l~p~~~~a~ 295 (474)
T 4abn_A 278 LEGFSQAAALDPAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 999999999999987654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-17 Score=186.88 Aligned_cols=258 Identities=14% Similarity=0.052 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAID------PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeld------P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
+|+.+|..++..|+|++|+..|++|+.+. +..+.+++.+|.+|..+|++++|+.++++++.+.+..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-------- 174 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-------- 174 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC--------
Confidence 56789999999999999999999999873 2346789999999999999999999999988754321
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAE 763 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p 763 (1166)
+++ .+....++..+|.+|..+|++++|+.++++++.+.+
T Consensus 175 ----------------------------~~~-------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 213 (378)
T 3q15_A 175 ----------------------------PLY-------------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213 (378)
T ss_dssp ----------------------------TTC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------------------CCc-------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 100 001245677899999999999999999999998866
Q ss_pred CCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHh
Q 039706 764 KNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRK 843 (1166)
Q Consensus 764 ~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~ 843 (1166)
..... ......+..+|.+|..+|++++|+.++++++.. .... ..+..+..+.
T Consensus 214 ~~~~~-------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~--------~~~~-~~~~~~~~~~ 265 (378)
T 3q15_A 214 DIQND-------------------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV--------SREK-VPDLLPKVLF 265 (378)
T ss_dssp HTTCH-------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HHHH-CGGGHHHHHH
T ss_pred HcCCH-------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------HHhh-CChhHHHHHH
Confidence 43221 122334577999999999999999999997431 1111 2333477888
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHhcccc-CCchhHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 844 SAGNEAFQAGRHSEAVEHYTAALSCTVE-SHPFAAICFCNRAAAYKALRH---ITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 844 ~lG~~~~~~G~yeEAie~y~kALel~~e-~~p~~a~a~~nlA~ay~~lGq---~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
.+|.++...|++++|+.+|++++.+... ..+.....+..++.+|...++ +.+|+..+++. ...|....++..+|.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Confidence 8999999999999999999999998642 224445566778888888888 88888888762 334556678889999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 920 LYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 920 ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
+|..+|++++|+.+|++++++..+..
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998865543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-17 Score=204.99 Aligned_cols=173 Identities=14% Similarity=0.184 Sum_probs=138.3
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
+..+.+|+++|.+|..+|++++|+..|++||+++|++..+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---------- 75 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---------- 75 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------
Confidence 3445678889999999999999999999999999999999999999999999999888888887766554
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
++.++.++|.+|..+|++++|++.|+++++++|+
T Consensus 76 ----------------------------------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~ 109 (723)
T 4gyw_A 76 ----------------------------------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109 (723)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ----------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4566778888888888888888888888888775
Q ss_pred CCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhh
Q 039706 765 NSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKS 844 (1166)
Q Consensus 765 n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~ 844 (1166)
+.. ++.+
T Consensus 110 ~~~-------------------------------------------------------------------------a~~~ 116 (723)
T 4gyw_A 110 FAD-------------------------------------------------------------------------AHSN 116 (723)
T ss_dssp CHH-------------------------------------------------------------------------HHHH
T ss_pred CHH-------------------------------------------------------------------------HHHH
Confidence 421 2334
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
+|.+|...|++++|+++|++||+++ |.++.+|+++|.+|..+|++++|++.+++++++.|+.
T Consensus 117 Lg~~~~~~g~~~eAi~~~~~Al~l~----P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 117 LASIHKDSGNIPEAIASYRTALKLK----PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 4667777777777777778888777 7778888888888888888888888888888776654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-16 Score=189.30 Aligned_cols=188 Identities=11% Similarity=0.007 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hccCCCCCccccCcccccC
Q 039706 715 EIALGVIDEALFISSYSEKLLEMKAEALFM-------LRKYE-------EVIQLCEQTFH-FAEKNSPPLDANGQSMELD 779 (1166)
Q Consensus 715 eeALe~lekALel~P~~~~al~~lA~~y~~-------lGdye-------eAi~~lekALe-l~p~n~~a~~~~g~~l~ld 779 (1166)
..|+..|++++...|.++.+|+.+|.++.. +|+++ +|+..|++++. +.|++..
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~------------ 322 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------------ 322 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH------------
Confidence 478889999999999999999999999987 79987 99999999997 6775421
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHH
Q 039706 780 SSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAV 859 (1166)
Q Consensus 780 ~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAi 859 (1166)
.+..++.++...|++++|+..|++++...+.. ....|...|..+.+.|++++|+
T Consensus 323 -------------l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 323 -------------LYFAYADYEESRMKYEKVHSIYNRLLAIEDID-------------PTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp -------------HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHhcCCHHHHHHHHHHHhCccccC-------------chHHHHHHHHHHHHhcCHHHHH
Confidence 24568889999999999999999986654431 0235677788889999999999
Q ss_pred HHHHHHHhccccCCchhHHHHHHHHHH-HHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 860 EHYTAALSCTVESHPFAAICFCNRAAA-YKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 860 e~y~kALel~~e~~p~~a~a~~nlA~a-y~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
..|++|++.. |....++...+.+ +..+|++++|+..|+++++.+|+++.+|..++.++..+|++++|...|++++
T Consensus 377 ~~~~~Al~~~----~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 377 MIFKKAREDA----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHHHTCT----TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcc----CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 9999999876 5555666655554 4468999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh
Q 039706 939 ALLTKQ 944 (1166)
Q Consensus 939 eL~P~~ 944 (1166)
...|.+
T Consensus 453 ~~~~~~ 458 (530)
T 2ooe_A 453 TSGSLP 458 (530)
T ss_dssp HSCCSC
T ss_pred hccCCC
Confidence 875543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-17 Score=171.75 Aligned_cols=189 Identities=13% Similarity=0.055 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISS-YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P-~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
.|++++|+..|++++.+.| .+..+++.+|.++..+|++++|+..|++++.+.|.+.
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------- 76 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA----------------------- 76 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH-----------------------
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH-----------------------
Confidence 5555555555555555555 5555555555555555555555555555555544321
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHH-----HHHhhhhHHHHHcCChHHHHHHHHH
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVREL-----LCRKSAGNEAFQAGRHSEAVEHYTA 864 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a-----~~l~~lG~~~~~~G~yeEAie~y~k 864 (1166)
..+..+|.+|..+|++++|+..|++++. +.+..... ..+..+|.++...|++++|+.+|++
T Consensus 77 --~~~~~l~~~~~~~~~~~~A~~~~~~al~------------~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 77 --NAYIGKSAAYRDMKNNQEYIATLTEGIK------------AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcccHHHHHHHHHHHHH------------HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 1133455555555555555555555421 11111111 3355555555555555555555555
Q ss_pred HHhccccCCch--hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 865 ALSCTVESHPF--AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 865 ALel~~e~~p~--~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
+++++ |. .+.+|+++|.+|..+|+ ..++++..+.+.....+ .+......+.|++|+.+|++++++.|
T Consensus 143 al~~~----p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 143 ATDVT----SKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HTTSS----CHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhcC----CCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 55554 55 55555555555544433 22344444443332222 23333444555999999999999999
Q ss_pred hhHHh
Q 039706 943 KQIEK 947 (1166)
Q Consensus 943 ~~~e~ 947 (1166)
++.+.
T Consensus 212 ~~~~~ 216 (228)
T 4i17_A 212 NRTEI 216 (228)
T ss_dssp TCHHH
T ss_pred CCHHH
Confidence 88664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-16 Score=172.97 Aligned_cols=188 Identities=9% Similarity=-0.021 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHc-CCHHHH
Q 039706 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL-GRLEEA 810 (1166)
Q Consensus 732 ~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~l-Gd~eeA 810 (1166)
..++..+|.+|..+|++++|+.+|++++.+.+..... ......+..+|.+|... |++++|
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-------------------~~~a~~~~~lg~~~~~~lg~~~~A 137 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF-------------------RRGANFKFELGEILENDLHDYAKA 137 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH-------------------HHHHHHHHHHHHHHHHhhcCHHHH
Confidence 4577889999999999999999999999998754221 11123356799999996 999999
Q ss_pred HHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc---hhHHHHHHHHHHH
Q 039706 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP---FAAICFCNRAAAY 887 (1166)
Q Consensus 811 l~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p---~~a~a~~nlA~ay 887 (1166)
+.+|++++...+. ..........+..+|.++...|+|++|+.+|++++.+.+.... ....+|.++|.+|
T Consensus 138 ~~~~~~Al~~~~~--------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 138 IDCYELAGEWYAQ--------DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp HHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 9999997542111 1111223566888999999999999999999999998754322 2234789999999
Q ss_pred HHhhchhHHHHHHHHHHHhCCChHHH-----HHHHHHHHH--HhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 888 KALRHITDAIADCNLAIALDGNYLKA-----ISRRATLYE--MIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 888 ~~lGq~eeAi~~lekALeldP~~~~A-----~~~LA~ay~--~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
..+|++++|+.+|+++++++|.+..+ +..++.++. ..+++++|+..|++++.++|....
T Consensus 210 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 99999999999999999999987654 445566664 457899999999999888776643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-15 Score=161.73 Aligned_cols=217 Identities=14% Similarity=0.056 Sum_probs=170.8
Q ss_pred CcchhHHHHHHHHHhchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 039706 591 EPNLASAETIAAQEACEKWRLSNRAATRMA----LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDAS 662 (1166)
Q Consensus 591 ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~----lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeAl 662 (1166)
+++.|...+..|+++.+..+++++|.+|.. .+++++|+..|+++++++ ++.+++.+|.+|.. .+++++|+
T Consensus 21 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~ 98 (273)
T 1ouv_A 21 DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKAL 98 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHH
Confidence 455666777788887788899999999999 999999999999999986 89999999999999 89999998
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 663 KYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEAL 742 (1166)
Q Consensus 663 ~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y 742 (1166)
.+|+++++++ ++.++..+|.+|
T Consensus 99 ~~~~~a~~~~----------------------------------------------------------~~~a~~~lg~~~ 120 (273)
T 1ouv_A 99 QYYSKACDLK----------------------------------------------------------YAEGCASLGGIY 120 (273)
T ss_dssp HHHHHHHHTT----------------------------------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHcC----------------------------------------------------------CccHHHHHHHHH
Confidence 8888876542 234556667777
Q ss_pred HH----ccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHH----cCCHHHHHHHH
Q 039706 743 FM----LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT----LGRLEEAIAAL 814 (1166)
Q Consensus 743 ~~----lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~----lGd~eeAl~~l 814 (1166)
.. .+++++|+.+|+++++..+. ..+..+|.+|.. .+++++|+.+|
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~~~~---------------------------~a~~~lg~~~~~~~~~~~~~~~A~~~~ 173 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDLNDG---------------------------DGCTILGSLYDAGRGTPKDLKKALASY 173 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTTCH---------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHhcCcH---------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77 77777777777777765310 113457777777 77888888888
Q ss_pred HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH----cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH-
Q 039706 815 ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ----AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA- 889 (1166)
Q Consensus 815 ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~----~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~- 889 (1166)
++++... ....+..+|.++.. .+++++|+.+|+++++.. + ..+++++|.+|..
T Consensus 174 ~~a~~~~----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 174 DKACDLK----------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----N--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHHTT----------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----C--HHHHHHHHHHHHTT
T ss_pred HHHHHCC----------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----C--HHHHHHHHHHHHcC
Confidence 7763321 23456667888888 999999999999999865 3 6788999999999
Q ss_pred ---hhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 890 ---LRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 890 ---lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
.+++++|+.+|++|+++.|..+..++.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999876655543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=159.12 Aligned_cols=179 Identities=14% Similarity=0.061 Sum_probs=155.3
Q ss_pred hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCC
Q 039706 727 ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGR 806 (1166)
Q Consensus 727 l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd 806 (1166)
..|.++.++..+|.++...|++++|+..+++++...|.+.. .+..+|.+|...|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~~~~~ 57 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL-------------------------AWLVRAEIYQYLKV 57 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------------------HHHHHHHHHHHTTC
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH-------------------------HHHHHHHHHHHcCC
Confidence 45778889999999999999999999999999998875421 24568999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc-CChHHHHHHHHHHHhccccCCchhHHHHHHHHH
Q 039706 807 LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA-GRHSEAVEHYTAALSCTVESHPFAAICFCNRAA 885 (1166)
Q Consensus 807 ~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~-G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ 885 (1166)
+++|+.++++++...+ .....+..+|.++... |++++|+.+|++++. . ...|....++.++|.
T Consensus 58 ~~~A~~~~~~a~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 58 NDKAQESFRQALSIKP--------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D-PTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-TTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-cCCcchHHHHHHHHH
Confidence 9999999999754332 2345677789999999 999999999999998 2 223777899999999
Q ss_pred HHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh-hhHH
Q 039706 886 AYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT-KQIE 946 (1166)
Q Consensus 886 ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P-~~~e 946 (1166)
++..+|++++|+..|+++++.+|.+..++..+|.+|..+|++++|+..|++++++.| ....
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999988 5544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-15 Score=169.76 Aligned_cols=284 Identities=12% Similarity=-0.013 Sum_probs=199.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHH----HHHHHHcCChHHHH-----------HHHHHHHHcC
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDP---DFLRVQVRA----ANCHLALGEIEDAS-----------KYFRMCLQSG 672 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP---~~~~A~~~L----A~lyl~lGd~eeAl-----------~~fekALel~ 672 (1166)
..+-...++..+++++|+..++.+...-+ .+...++.. .+....++.+..+. ..++++-. .
T Consensus 15 ~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~ 93 (383)
T 3ulq_A 15 KINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-K 93 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-c
Confidence 34556678889999999999998865432 244333222 22222233333333 33332211 1
Q ss_pred CCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC---C---ChHHHHHHHHHHHHHcc
Q 039706 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS---S---YSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 673 P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~---P---~~~~al~~lA~~y~~lG 746 (1166)
| ........++............|++++|+.+|++++.+. + ....++..+|.+|..+|
T Consensus 94 ~----------------~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~ 157 (383)
T 3ulq_A 94 Q----------------ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK 157 (383)
T ss_dssp T----------------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred C----------------CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 111111222222223333446899999999999999872 3 35689999999999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh
Q 039706 747 KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML 826 (1166)
Q Consensus 747 dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l 826 (1166)
++++|+.++++++.+.+..... .......+..+|.+|..+|++++|+.+|++++..
T Consensus 158 ~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 213 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHEAY------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM------ 213 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCSTT------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHHHHHHHhCccc------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------
Confidence 9999999999999998765321 0112344678999999999999999999997431
Q ss_pred hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc-CC-chhHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 039706 827 ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE-SH-PFAAICFCNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 827 e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e-~~-p~~a~a~~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
..........+..+.++|.++...|++++|+.+|++|+.+... .. |..+.++.++|.+|..+|++++|+.++++++
T Consensus 214 --~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 214 --AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2222334455678889999999999999999999999986532 22 6778999999999999999999999999999
Q ss_pred Hh-----CCChHHHHHHHHHHHHHhhC---HHHHHHHHHHH
Q 039706 905 AL-----DGNYLKAISRRATLYEMIRD---YDHAASDFHRL 937 (1166)
Q Consensus 905 el-----dP~~~~A~~~LA~ay~~lGd---yeeAi~~yekA 937 (1166)
++ +|.....+..+|.+|...|+ +.+|+..++++
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 292 AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 98 45555557789999999999 55555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=165.94 Aligned_cols=188 Identities=12% Similarity=0.071 Sum_probs=155.8
Q ss_pred HHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHc
Q 039706 725 LFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL 804 (1166)
Q Consensus 725 Lel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~l 804 (1166)
..+.|.++..++.+|.+++..|+|++|+..|++++...|.++.. ...++.+|.+|+.+
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----------------------~~a~~~lg~~~~~~ 65 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA----------------------ADAQFYLARAYYQN 65 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH----------------------HHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch----------------------HHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999998865321 11246799999999
Q ss_pred CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH--------cCChHHHHHHHHHHHhccccCCchh
Q 039706 805 GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ--------AGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 805 Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~--------~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
|++++|+..|++++...|. .+.....++.+|.+++. .|++++|+..|++++...|.. +..
T Consensus 66 ~~~~~A~~~~~~~l~~~p~-----------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~ 133 (261)
T 3qky_A 66 KEYLLAASEYERFIQIYQI-----------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH-ELV 133 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTT-----------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC-TTH
T ss_pred CcHHHHHHHHHHHHHHCCC-----------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc-hhH
Confidence 9999999999997654332 12335667788999999 999999999999999988432 222
Q ss_pred HHHH--------------HHHHHHHHHhhchhHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHh----------hCHHH
Q 039706 877 AICF--------------CNRAAAYKALRHITDAIADCNLAIALDGN---YLKAISRRATLYEMI----------RDYDH 929 (1166)
Q Consensus 877 a~a~--------------~nlA~ay~~lGq~eeAi~~lekALeldP~---~~~A~~~LA~ay~~l----------Gdyee 929 (1166)
..++ +++|.+|..+|++++|+..|++++...|+ ...+++.+|.+|..+ |++++
T Consensus 134 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (261)
T 3qky_A 134 DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRR 213 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHH
Confidence 2232 88999999999999999999999999998 678999999999988 99999
Q ss_pred HHHHHHHHHHHhhhhHH
Q 039706 930 AASDFHRLIALLTKQIE 946 (1166)
Q Consensus 930 Ai~~yekALeL~P~~~e 946 (1166)
|+..|+++++.+|++..
T Consensus 214 A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 214 AVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHCCCChH
Confidence 99999999999998754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-16 Score=184.46 Aligned_cols=286 Identities=12% Similarity=-0.041 Sum_probs=194.1
Q ss_pred cchhHHHHHHHHHhchHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----ChHHHHH
Q 039706 592 PNLASAETIAAQEACEKWRLSNRAATRMALGRM---RDALSDCMLAVAIDPDFLRVQVRAANCHLALG-----EIEDASK 663 (1166)
Q Consensus 592 p~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y---~eAI~~fekALeldP~~~~A~~~LA~lyl~lG-----d~eeAl~ 663 (1166)
+..|...+..+++...+.+++++|.+|+..|++ ++|+..|+++++. ++.+++.+|.++...+ ++++|+.
T Consensus 19 ~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~ 95 (452)
T 3e4b_A 19 TVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAES 95 (452)
T ss_dssp HHHHHHHHHHHHHHTCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 344556677777777778889999999999999 9999999999976 7789999999877776 8899999
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhhhHHh---HHHH------------HHHHHHHHHhhcCC----CHHHHHHHHHHH
Q 039706 664 YFRMCLQSGSDVCVDQKIAVEASDGLQKAQK---VSEC------------MQRSAQLLQNKTSN----DAEIALGVIDEA 724 (1166)
Q Consensus 664 ~fekALel~P~n~~a~~~l~Ea~~~L~k~~~---~~e~------------~~~a~~~l~~~~~g----d~eeALe~lekA 724 (1166)
+|++++..++.. ....+..++........ .... ...++.++ ...+ ..+.|..++..+
T Consensus 96 ~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y--~~~~~~~~~~~~a~~~~~~a 171 (452)
T 3e4b_A 96 LLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLY--RTQGTYDQHLDDVERICKAA 171 (452)
T ss_dssp HHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHH--HHHTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH--HcCCCcccCHHHHHHHHHHH
Confidence 999999865443 44444444443332111 1111 11111121 1223 455555666666
Q ss_pred HHhCCChHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHH
Q 039706 725 LFISSYSEKLLEMKAEALFMLR---KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSY 801 (1166)
Q Consensus 725 Lel~P~~~~al~~lA~~y~~lG---dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay 801 (1166)
...+|. +++.+|.+|...| ++++|+..|++++...+.... .++.+|.+|
T Consensus 172 ~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~-------------------------~~~~Lg~~y 223 (452)
T 3e4b_A 172 LNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ-------------------------RVDSVARVL 223 (452)
T ss_dssp TTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH-------------------------HHHHHHHHH
T ss_pred HcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH-------------------------HHHHHHHHH
Confidence 555555 8999999999999 999999999999988764321 125588888
Q ss_pred HHc----CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH-H--HHcCChHHHHHHHHHHHhccccCCc
Q 039706 802 FTL----GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE-A--FQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 802 ~~l----Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~-~--~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
... +++++|+.+|+++. +.....+..+|.+ + ...+++++|+.+|++|++ .
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa-----------------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~------~ 280 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA-----------------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA------A 280 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG-----------------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH------T
T ss_pred hCCCCCCCCHHHHHHHHHHHc-----------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH------C
Confidence 665 79999999999973 2345566777887 4 478999999999999997 4
Q ss_pred hhHHHHHHHHHHHHHhh-----chhHHHHHHHHHHHhCCChHHHHHHHHHHHHH----hhCHHHHHHHHHHHHH
Q 039706 875 FAAICFCNRAAAYKALR-----HITDAIADCNLAIALDGNYLKAISRRATLYEM----IRDYDHAASDFHRLIA 939 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lG-----q~eeAi~~lekALeldP~~~~A~~~LA~ay~~----lGdyeeAi~~yekALe 939 (1166)
.++.+++++|.+|. .| ++++|+.+|++|+ +.++.+++++|.+|.. ..++++|+.+|+++.+
T Consensus 281 g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 281 DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 47889999999998 66 9999999999999 8999999999999987 4499999999999985
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=167.33 Aligned_cols=231 Identities=11% Similarity=-0.028 Sum_probs=160.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPD------FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~------~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
|.+|..+|+|++|+.+|.+|+.+.+. ...+|..+|.+|..+|++++|+.+|++++++.|.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~-------------- 109 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH-------------- 109 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------------
Confidence 55666777777777777777776432 1456777777777777777777777777654321
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML-RKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l-GdyeeAi~~lekALel~p~n~~ 767 (1166)
.|++..+ ..++..+|.+|..+ |++++|+.+|++++++.|....
T Consensus 110 ----------------------~g~~~~~--------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 110 ----------------------RGQFRRG--------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp ----------------------TTCHHHH--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------------------cCCHHHH--------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 1222222 34577899999996 9999999999999999885421
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
. ......+..+|.+|..+|++++|+.+|++++...+.... ........+..+|.
T Consensus 154 ~-------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~lg~ 207 (292)
T 1qqe_A 154 V-------------------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL-------SQWSLKDYFLKKGL 207 (292)
T ss_dssp H-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-------TGGGHHHHHHHHHH
T ss_pred h-------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHH
Confidence 1 011123567899999999999999999998765544211 01123446778899
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCc-hhHHHHHHHHHHHH--HhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHP-FAAICFCNRAAAYK--ALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p-~~a~a~~nlA~ay~--~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
++...|++++|+.+|++++.++|.... .....+..++.++. ..+++++|+..|++++.++|.+..++..+-..+
T Consensus 208 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 208 CQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999999999999999998843211 12234555666664 457799999999999999998877777665554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=168.81 Aligned_cols=239 Identities=8% Similarity=-0.087 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 039706 608 KWRLSNRAATRM-------ALGRM-------RDALSDCMLAVA-IDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672 (1166)
Q Consensus 608 ~~ay~nrA~ayl-------~lG~y-------~eAI~~fekALe-ldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~ 672 (1166)
+.+|+++|..+. ..|++ ++|+..|++|++ ++|++..+|..+|.++..+|++++|...|++++++.
T Consensus 50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 129 (308)
T 2ond_A 50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 129 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Confidence 345666777765 45886 999999999999 799999999999999999999999999999999999
Q ss_pred CCchh-HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH-ccCHHH
Q 039706 673 SDVCV-DQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM-LRKYEE 750 (1166)
Q Consensus 673 P~n~~-a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~-lGdyee 750 (1166)
|.+.. .+. ....++ ...|++++|+..|+++++..|....++...+.+... +|++++
T Consensus 130 p~~~~~~~~--------------------~~~~~~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 130 DIDPTLVYI--------------------QYMKFA--RRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp SSCTHHHHH--------------------HHHHHH--HHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred ccCccHHHH--------------------HHHHHH--HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 87532 111 111111 135788889999999998888887777766655443 689999
Q ss_pred HHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhh
Q 039706 751 VIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLI 830 (1166)
Q Consensus 751 Ai~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~ 830 (1166)
|+..|++++++.|++.. .+..++..+..+|++++|+.+|++++....
T Consensus 188 A~~~~~~al~~~p~~~~-------------------------~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-------- 234 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPE-------------------------YVLAYIDYLSHLNEDNNTRVLFERVLTSGS-------- 234 (308)
T ss_dssp HHHHHHHHHHHHTTCHH-------------------------HHHHHHHHHHTTCCHHHHHHHHHHHHHSSS--------
T ss_pred HHHHHHHHHHhCCCcHH-------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhccC--------
Confidence 99999999988875422 134567777788888888888888744210
Q ss_pred hhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 831 PLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 831 ~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
+.+ ......+...+..+...|++++|+.++++++++.|+ +..... ++.+ ..-.+.+.++|.+
T Consensus 235 -l~p-~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~----~~~~~~-~~~~-----------~~r~~~l~~~P~~ 296 (308)
T 2ond_A 235 -LPP-EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE----EYEGKE-TALL-----------VDRYKFMDLYPCS 296 (308)
T ss_dssp -SCG-GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT----TTSSCH-HHHH-----------HTTTCBTTBCSSC
T ss_pred -CCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc----ccccch-HHHH-----------HHHHHhcccCCCC
Confidence 000 012334555577777788888888888888887732 221111 1111 1111556677888
Q ss_pred HHHHHHHHH
Q 039706 911 LKAISRRAT 919 (1166)
Q Consensus 911 ~~A~~~LA~ 919 (1166)
+.++..+|.
T Consensus 297 ~~~ln~lgY 305 (308)
T 2ond_A 297 ASELKALGY 305 (308)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhcCC
Confidence 877776653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-14 Score=163.77 Aligned_cols=248 Identities=10% Similarity=0.046 Sum_probs=197.7
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 615 AATRMALGRM-RDALSDCMLAVAIDPDFLRVQVRAANCHLALG--EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 615 A~ayl~lG~y-~eAI~~fekALeldP~~~~A~~~LA~lyl~lG--d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
..+.+..|.+ ++|+..+.++|.++|++..+|..++.++..++ ++++|+..+.++|..+|.+...+.....+...+..
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 3445556666 68999999999999999999999999999999 99999999999999999987665443332211100
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhccCCCCCc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYE--EVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdye--eAi~~lekALel~p~n~~a~ 769 (1166)
. ....+++++++..++++++.+|.+..+|..++.++..+++++ ++++++.++++.+|.|..+
T Consensus 119 -------------~--l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sA- 182 (306)
T 3dra_A 119 -------------L--NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSA- 182 (306)
T ss_dssp -------------H--TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHH-
T ss_pred -------------h--ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHH-
Confidence 0 001278999999999999999999999999999999999999 9999999999999877433
Q ss_pred cccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 770 DANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 770 ~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
|. ..+.++..++.. .
T Consensus 183 ----------------------W~--~R~~ll~~l~~~--------------------------------------~--- 197 (306)
T 3dra_A 183 ----------------------WS--HRFFLLFSKKHL--------------------------------------A--- 197 (306)
T ss_dssp ----------------------HH--HHHHHHHSSGGG--------------------------------------C---
T ss_pred ----------------------HH--HHHHHHHhcccc--------------------------------------c---
Confidence 22 222222222110 0
Q ss_pred HHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH-HHHHHHHHHHhC---CChHHHHHHHHHHHHHhh
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD-AIADCNLAIALD---GNYLKAISRRATLYEMIR 925 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee-Ai~~lekALeld---P~~~~A~~~LA~ay~~lG 925 (1166)
....+++++++++++|.++ |.+..+|+.++.++..+|+..+ +...+.+++.++ |.++.++..+|.+|.++|
T Consensus 198 -~~~~~~eEl~~~~~aI~~~----p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 198 -TDNTIDEELNYVKDKIVKC----PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp -CHHHHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred -hhhhHHHHHHHHHHHHHhC----CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 0012788999999999998 9999999999999999998555 556888888776 888999999999999999
Q ss_pred CHHHHHHHHHHHHH-HhhhhHHhh
Q 039706 926 DYDHAASDFHRLIA-LLTKQIEKS 948 (1166)
Q Consensus 926 dyeeAi~~yekALe-L~P~~~e~~ 948 (1166)
++++|++.|+.+.+ ++|-...-|
T Consensus 273 ~~~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CHHHHHHHHHHHHhccChHHHHHH
Confidence 99999999999997 788877665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=150.55 Aligned_cols=173 Identities=17% Similarity=0.122 Sum_probs=149.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHH
Q 039706 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEA 810 (1166)
Q Consensus 731 ~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeA 810 (1166)
...++..+|.++...|++++|+..+++++...|.+. ..+..+|.+|...|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~A 61 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV-------------------------DVALHLGIAYVKTGAVDRG 61 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH-------------------------HHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh-------------------------HHHHHHHHHHHHcCCHHHH
Confidence 356778889999999999999999998887766431 1245688899999999999
Q ss_pred HHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh
Q 039706 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 811 l~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l 890 (1166)
+.++++++...+ .....+..+|.++...|++++|+.+|++++... |....++..+|.++..+
T Consensus 62 ~~~~~~~~~~~~--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~ 123 (186)
T 3as5_A 62 TELLERSLADAP--------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN----PINFNVRFRLGVALDNL 123 (186)
T ss_dssp HHHHHHHHHHCT--------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCC--------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----cHhHHHHHHHHHHHHHc
Confidence 999998744322 234566778999999999999999999999987 77889999999999999
Q ss_pred hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|++++|+..+++++...|.++.++..+|.+|..+|++++|+..|++++++.|++..
T Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999999999999999999999999999999999999999887643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-15 Score=159.56 Aligned_cols=206 Identities=16% Similarity=0.007 Sum_probs=166.1
Q ss_pred cCCCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCcc
Q 039706 710 TSNDAEIALGVIDEALFI--------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSS 781 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel--------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~ 781 (1166)
..+++++|+.+|++++++ .|....++..+|.+|..+|++++|+.++++++.+....... +.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~- 81 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK----------DH- 81 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT----------TC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC----------cc-
Confidence 467888888888888874 25667899999999999999999999999999885321000 00
Q ss_pred chhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh--ccchHHHHHHhhhhHHHHHcCChHHHH
Q 039706 782 ESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL--AGTVRELLCRKSAGNEAFQAGRHSEAV 859 (1166)
Q Consensus 782 ~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L--~~~~~~a~~l~~lG~~~~~~G~yeEAi 859 (1166)
......+..+|.+|...|++++|+.+|++++.. .... ...+..+..+..+|.++...|++++|+
T Consensus 82 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 82 ------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI--------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp ------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 112234577999999999999999999997431 1111 113566788899999999999999999
Q ss_pred HHHHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-----------------------------
Q 039706 860 EHYTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL----------------------------- 906 (1166)
Q Consensus 860 e~y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel----------------------------- 906 (1166)
.+|++++.+.. ...+....++.++|.+|..+|++++|+..+++++.+
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 99999998721 124788899999999999999999999999999986
Q ss_pred --------------------CCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 907 --------------------DGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 907 --------------------dP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.|..+.++..+|.+|..+|++++|+..|++++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2556778999999999999999999999999864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=189.85 Aligned_cols=174 Identities=11% Similarity=-0.021 Sum_probs=118.6
Q ss_pred HHcCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 619 MALGRMRDALSDCMLAV--------AIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 619 l~lG~y~eAI~~fekAL--------eldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
+..|++++|+..|++++ +++|++..+++.+|.+|..+|++++|+..|+++++++|++...+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------- 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYR-------- 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHH--------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHH--------
Confidence 78899999999999999 99999999999999999999999999999999888777643221111
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
+.+ +...|++++|+..|+++++++|.++.++..+|.+|..+|++++ +..|+++++++|.+
T Consensus 474 ------------g~~--~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~----- 533 (681)
T 2pzi_A 474 ------------AVA--ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV----- 533 (681)
T ss_dssp ------------HHH--HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-----
T ss_pred ------------HHH--HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-----
Confidence 001 1123555555555555555555555555555555555555555 55555555554432
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
...+.++|.++.
T Consensus 534 --------------------------------------------------------------------~~a~~~lg~~~~ 545 (681)
T 2pzi_A 534 --------------------------------------------------------------------ISAAFGLARARS 545 (681)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Confidence 334555677888
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH 892 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq 892 (1166)
..|++++|+.+|++|++++ |.+..+|+++|.+|...++
T Consensus 546 ~~g~~~~A~~~~~~al~l~----P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTS----RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTS----TTHHHHHHHHHHHTC----
T ss_pred HcCCHHHHHHHHHhhcccC----cccHHHHHHHHHHHHccCC
Confidence 8888888888888888877 8888888888888877555
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-14 Score=152.56 Aligned_cols=125 Identities=7% Similarity=-0.122 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
+.+++++|..++..|+|++|+..|++++...|.. ..+++.+|.+|+.+|++++|+..|++++++.|++......
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a--- 80 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV--- 80 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH---
Confidence 4568899999999999999999999999999976 4799999999999999999999999999999986431110
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
+...+..+.. . .+.....+..++.++..+|++++|+..|+++++..|+
T Consensus 81 --------------~~~~g~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 81 --------------MYMRGLTNMA--L----------------DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp --------------HHHHHHHHHH--H----------------HC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred --------------HHHHHHHHHh--h----------------hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence 0011111000 0 0111123445666777788888888888888888886
Q ss_pred CCC
Q 039706 765 NSP 767 (1166)
Q Consensus 765 n~~ 767 (1166)
...
T Consensus 129 ~~~ 131 (225)
T 2yhc_A 129 SQY 131 (225)
T ss_dssp CTT
T ss_pred Chh
Confidence 643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=154.46 Aligned_cols=186 Identities=12% Similarity=0.046 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..++.+|..++..|+|++|+..|+++++++|++..+|+.++. . .....
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~----------------~~~~~----------- 52 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----D----------------KNSEI----------- 52 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----C----------------TTSHH-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----c----------------chhhh-----------
Confidence 456778999999999999999999999999999888876431 0 00000
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
........+.+ +...|++++|+..|+++++++|.++.++..+|.+|..+|++++|+..|+++++++|++..+
T Consensus 53 ------~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 53 ------SSKLATELALA--YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp ------HHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ------hHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 00000111111 2246777778888888888888888888889999999999999999999999888865332
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
+..+|.+|+..|+.
T Consensus 125 -------------------------~~~lg~~~~~~~~~----------------------------------------- 138 (208)
T 3urz_A 125 -------------------------NIFLGNYYYLTAEQ----------------------------------------- 138 (208)
T ss_dssp -------------------------HHHHHHHHHHHHHH-----------------------------------------
T ss_pred -------------------------HHHHHHHHHHHhHH-----------------------------------------
Confidence 34455555443321
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
....|+..|.+++... ....+++++|.++..+|++++|+.+|++|++++|+.
T Consensus 139 -----~~~~~~~~~~~~~~~~-----~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 139 -----EKKKLETDYKKLSSPT-----KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -----HHHHHHHHHC---CCC-----HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred -----HHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 1223444454444321 223356667777777777777777777777777763
|
| >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-17 Score=184.03 Aligned_cols=136 Identities=28% Similarity=0.372 Sum_probs=28.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++. ..|+++|++|++||++|+||.+|
T Consensus 28 ~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~---------------------~~a~~~f~~i~~Ay~vL~d~~~R 86 (329)
T 3lz8_A 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE---------------------NDAEAKFKDLAEAWEVLKDEQRR 86 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------hHHHHHHHHHHHHHHHhhhhhhh
Confidence 499999999999999999999999999999999752 36788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.+..........++.+ .+. . .|+..+....|..+|++.+ ...++|.++.+.+.|+|+|+++|++
T Consensus 87 ~~YD~~~~~~~~~~~~~~~~---~~~--~--~f~~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~ 159 (329)
T 3lz8_A 87 AEYDQLWQHRNDPGFGRQRQ---THE--Q--SYSQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQT 159 (329)
T ss_dssp ---------------------------------------------------------CCCCCCEEEEECCCTTGGGSCEE
T ss_pred cccchhhccccCCCcccccc---ccc--C--CcCCCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccc
Confidence 99999743211000000000 000 0 0110001112334443321 1235689999999999999999999
Q ss_pred ceeeceeee
Q 039706 1139 PFVTIREFM 1147 (1166)
Q Consensus 1139 K~i~~~~~~ 1147 (1166)
+.|.+...+
T Consensus 160 k~i~i~~~v 168 (329)
T 3lz8_A 160 RTISYNLPV 168 (329)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 999998554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-13 Score=157.97 Aligned_cols=204 Identities=13% Similarity=0.061 Sum_probs=162.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 707 QNKTSNDAEIALGVIDEALFISS------YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 707 ~~~~~gd~eeALe~lekALel~P------~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
.....|++++|+.+|++|+.+.+ ....++..+|.+|..+|++++|+.++++++.+.+.....
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~------------ 177 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY------------ 177 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC------------
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc------------
Confidence 34568999999999999998742 346789999999999999999999999999998764321
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie 860 (1166)
. ......+..+|.+|..+|++++|+.+|++++. ...........+..+.++|.++...|++++|+.
T Consensus 178 ~------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 178 S------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALE--------LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp H------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred h------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0 01233457799999999999999999999743 222222334556788899999999999999999
Q ss_pred HHHHHHhccc-cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHhhC---HHHHH
Q 039706 861 HYTAALSCTV-ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL-----DGNYLKAISRRATLYEMIRD---YDHAA 931 (1166)
Q Consensus 861 ~y~kALel~~-e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel-----dP~~~~A~~~LA~ay~~lGd---yeeAi 931 (1166)
+|++++.+.. ...|..+.+++++|.+|..+|++++|+.++++++++ ++.....+..++.+|...++ +.+|+
T Consensus 244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9999998432 123667899999999999999999999999999998 45566677888888888888 56666
Q ss_pred HHHHH
Q 039706 932 SDFHR 936 (1166)
Q Consensus 932 ~~yek 936 (1166)
..+++
T Consensus 324 ~~~~~ 328 (378)
T 3q15_A 324 SYFEK 328 (378)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=154.81 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHhCCChH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 880 FCNRAAAYKALRHITDAIADCNLAIALDGNYL---KAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 880 ~~nlA~ay~~lGq~eeAi~~lekALeldP~~~---~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
...+|.+|...|++.+|+..|+++++..|+.+ .+++.+|.+|..+|++++|+..+++++...|+..+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 36789999999999999999999999999875 789999999999999999999999999887777653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-13 Score=155.45 Aligned_cols=284 Identities=11% Similarity=-0.044 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDF------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
++.++|.+|...|++++|+..+++++.+.|.. ..++..+|.++..+|++++|+.+|++++.+.+.....
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~----- 129 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE----- 129 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT-----
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-----
Confidence 57889999999999999999999999986643 2457889999999999999999999999864221000
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY-----SEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~-----~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
........+...... +...|++++|+.++++++.+.+. ...++..+|.++...|++++|+.+++++
T Consensus 130 -------~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 130 -------QLPMHEFLVRIRAQL--LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp -------TSTHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -------cCcHHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000001111112222 23479999999999999998764 3567889999999999999999999999
Q ss_pred HHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHH
Q 039706 759 FHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRE 838 (1166)
Q Consensus 759 Lel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~ 838 (1166)
+.+.+..... ..........++.++...|++++|+.++++++...+.. ....
T Consensus 201 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~----------~~~~ 252 (373)
T 1hz4_A 201 ENLLGNGKYH------------------SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN----------NHFL 252 (373)
T ss_dssp HHHHTTSCCC------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT----------CGGG
T ss_pred HHHHhccCcc------------------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc----------chhh
Confidence 9885532110 00001111234566889999999999999976533221 0011
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC--chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH--PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~--p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
...+..+|.++...|++++|+..+++++...+... .....++..+|.++..+|++++|+..+.+++.+.+...
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g----- 327 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG----- 327 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----
Confidence 22356679999999999999999999998753211 12345888999999999999999999999998764311
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 917 RATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
....+...| +.....+++++...|
T Consensus 328 ~~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 328 FISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp CCHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHHcc--HHHHHHHHHHHhCCC
Confidence 112223333 556666777766554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-15 Score=155.20 Aligned_cols=185 Identities=10% Similarity=0.023 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHH
Q 039706 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAI 811 (1166)
Q Consensus 732 ~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl 811 (1166)
+..++.+|..++..|++++|+..|++++.++|++..++...+... .. .........+|.+|...|++++|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~---~~------~~~~~~~~~lg~~~~~~g~~~~A~ 74 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDK---NS------EISSKLATELALAYKKNRNYDKAY 74 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCT---TS------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcc---hh------hhhHHHHHHHHHHHHHCCCHHHHH
Confidence 455666677777777777777777777777665543321111000 00 000111245899999999999999
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR 891 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG 891 (1166)
..|++++... +.....+..+|.++...|++++|+.+|+++++++ |.++.+|+++|.+|..++
T Consensus 75 ~~~~~al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 75 LFYKELLQKA--------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE----ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHh
Confidence 9999985433 3456778889999999999999999999999998 899999999999998776
Q ss_pred c--hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 892 H--ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 892 q--~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
+ ...|+..+.+++...| ...+++.+|.++..+|+|++|+.+|++++++.|+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 5 5567788888765433 23478889999999999999999999999999874
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=162.86 Aligned_cols=192 Identities=15% Similarity=0.003 Sum_probs=153.3
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
.++++.|+.+|.++ +.+|..+|+|++|+..|.+++.+.+..... ...
T Consensus 29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~~ 75 (307)
T 2ifu_A 29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSL-------------------FHA 75 (307)
T ss_dssp SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------HHH
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH-------------------HHH
Confidence 47888898888876 567889999999999999999987754221 111
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
...+..+|.+|..+|++++|+.+|++++.. ...+......+..+.++|.+|.. |++++|+.+|++|+.+.+
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVM--------YVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--------HHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 233567899999999999999999997431 11122223446778889999998 999999999999999874
Q ss_pred cCC--chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 871 ESH--PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------LKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 871 e~~--p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
... .....++.++|.+|..+|+|++|+.+|++++.+.|.. ..+++.+|.++..+|++++|+..|++++ +.|
T Consensus 147 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 147 NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 321 2346789999999999999999999999999986543 3578899999999999999999999999 888
Q ss_pred hhH
Q 039706 943 KQI 945 (1166)
Q Consensus 943 ~~~ 945 (1166)
...
T Consensus 226 ~~~ 228 (307)
T 2ifu_A 226 GFS 228 (307)
T ss_dssp TST
T ss_pred CCC
Confidence 654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-14 Score=154.03 Aligned_cols=237 Identities=16% Similarity=0.043 Sum_probs=149.5
Q ss_pred cchhHHHHHHHHHh----------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Q 039706 592 PNLASAETIAAQEA----------CEKWRLSNRAATRMALGRMRDALSDCMLAVAI--------DPDFLRVQVRAANCHL 653 (1166)
Q Consensus 592 p~~A~a~~~aAIe~----------~e~~ay~nrA~ayl~lG~y~eAI~~fekALel--------dP~~~~A~~~LA~lyl 653 (1166)
++.+...+..+++. ....+++.+|.+|..+|++++|+..|++++.+ .|....++..+|.+|.
T Consensus 43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (311)
T 3nf1_A 43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 122 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 34455555555552 22366889999999999999999999999988 4666889999999999
Q ss_pred HcCChHHHHHHHHHHHHcC-----CCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh-
Q 039706 654 ALGEIEDASKYFRMCLQSG-----SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFI- 727 (1166)
Q Consensus 654 ~lGd~eeAl~~fekALel~-----P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel- 727 (1166)
.+|++++|+.+|++++++. ++.+ .....+...+.+ +...|++++|+.+|++++.+
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~la~~--~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 123 KRGKYKEAEPLCKRALEIREKVLGKDHP-----------------DVAKQLNNLALL--CQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHH--HHTTTCHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHHhcCCCCh-----------------HHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999998753 1110 011111112222 22466777777777777766
Q ss_pred -------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHH
Q 039706 728 -------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKS 800 (1166)
Q Consensus 728 -------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~a 800 (1166)
.|....++..+|.+|..+|++++|+.++++++.+.+..... ..++.
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~------------------- 236 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG--------SVDDE------------------- 236 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--------CCCcc-------------------
Confidence 55556666777777777777777777777776654421000 00000
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHH
Q 039706 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICF 880 (1166)
Q Consensus 801 y~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~ 880 (1166)
..........+...+..+...+.+.+|+..+.+++... |..+.++
T Consensus 237 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 281 (311)
T 3nf1_A 237 -------------------------------NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS----PTVTTTL 281 (311)
T ss_dssp --------------------------------CCHHHHHHHHHHC-------CCSCCCC---------C----HHHHHHH
T ss_pred -------------------------------hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC----chHHHHH
Confidence 00001112233344566677788888999999988766 8889999
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHhCCC
Q 039706 881 CNRAAAYKALRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 881 ~nlA~ay~~lGq~eeAi~~lekALeldP~ 909 (1166)
.++|.+|..+|++++|+.+|++++++.|.
T Consensus 282 ~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 282 KNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998774
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=161.38 Aligned_cols=235 Identities=12% Similarity=-0.031 Sum_probs=170.5
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHH
Q 039706 620 ALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECM 699 (1166)
Q Consensus 620 ~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~ 699 (1166)
..|++.+|+..+++|.+..+.. + +...+++++|..+|.++..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---~------~~~~~~~~~A~~~~~~a~~~---------------------------- 45 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---F------MKWKPDYDSAASEYAKAAVA---------------------------- 45 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---S------SSCSCCHHHHHHHHHHHHHH----------------------------
T ss_pred ccchHHHHHHHHHHHHHHcccc---c------cCCCCCHHHHHHHHHHHHHH----------------------------
Confidence 4577888888888888776642 1 11147788888887765321
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccC
Q 039706 700 QRSAQLLQNKTSNDAEIALGVIDEALFISSY------SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANG 773 (1166)
Q Consensus 700 ~~a~~~l~~~~~gd~eeALe~lekALel~P~------~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g 773 (1166)
+...++|++|+.+|.+++.+.+. ...++..+|.+|..+|++++|+.+|++++.+.+.....
T Consensus 46 --------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~----- 112 (307)
T 2ifu_A 46 --------FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP----- 112 (307)
T ss_dssp --------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH-----
T ss_pred --------HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH-----
Confidence 12368888888888888877542 24688899999999999999999999999987643211
Q ss_pred cccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC
Q 039706 774 QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853 (1166)
Q Consensus 774 ~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G 853 (1166)
......+..+|.+|.. |++++|+.+|++++...+ ........+..+.++|.++...|
T Consensus 113 --------------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~--------~~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 113 --------------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE--------NEERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp --------------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH--------hCCChhHHHHHHHHHHHHHHHcC
Confidence 1112335679999988 999999999999743211 11112234677889999999999
Q ss_pred ChHHHHHHHHHHHhccccCC--chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH-----HHHHHHHHHHHhhC
Q 039706 854 RHSEAVEHYTAALSCTVESH--PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK-----AISRRATLYEMIRD 926 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~--p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~-----A~~~LA~ay~~lGd 926 (1166)
+|++|+.+|++++.+.+... +....++.++|.++..+|++++|+.+|++++ ++|.+.. .+..++.++ ..++
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d 247 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQD 247 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTC
T ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcC
Confidence 99999999999999874322 2234588899999999999999999999999 9997643 334444444 4455
Q ss_pred HHH
Q 039706 927 YDH 929 (1166)
Q Consensus 927 yee 929 (1166)
.+.
T Consensus 248 ~~~ 250 (307)
T 2ifu_A 248 EEQ 250 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=142.27 Aligned_cols=111 Identities=27% Similarity=0.419 Sum_probs=105.9
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKA 913 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A 913 (1166)
.++..+..++++|+.+++.|+|++|+.+|++||+++ |.++.+|+++|.+|..+|++++|+.+|++||+++|+++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 456778889999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|+.+|.+|..+|++++|+.+|+++++++|++.+..
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~ 118 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 99999999999999999999999999999987754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=171.08 Aligned_cols=288 Identities=14% Similarity=-0.008 Sum_probs=200.4
Q ss_pred chhHHHHHHHHHhchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHH
Q 039706 593 NLASAETIAAQEACEKWRLSNRAATRMALG-----RMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIED---ASKY 664 (1166)
Q Consensus 593 ~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG-----~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~ee---Al~~ 664 (1166)
..|...+..|++. .+.+++++|.++...+ ++++|+..|++++... +..+++.||.+|...+...+ |...
T Consensus 55 ~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~ 131 (452)
T 3e4b_A 55 KQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQ 131 (452)
T ss_dssp -----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 4555666667766 6778888999777766 7889999999998854 45589999999998776544 4444
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH---------------HHHHHHHHHHHhhcCC---CHHHHHHHHHHHHH
Q 039706 665 FRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS---------------ECMQRSAQLLQNKTSN---DAEIALGVIDEALF 726 (1166)
Q Consensus 665 fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~---------------e~~~~a~~~l~~~~~g---d~eeALe~lekALe 726 (1166)
+.++..... ......+..++.......... .++..++.++. ..| ++++|+.+|++++.
T Consensus 132 ~~~a~~~g~--~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~--~~g~~~~~~~A~~~~~~aa~ 207 (452)
T 3e4b_A 132 ISQWQAAGY--PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQ--KKQQPEQQAELLKQMEAGVS 207 (452)
T ss_dssp HHHHHHHTC--TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCcccHHHHHHHHHHHHH
Confidence 444443322 222333333222222111100 11222222222 367 99999999999999
Q ss_pred hCCChHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHH-H
Q 039706 727 ISSYSEKLLEMKAEALFML----RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKS-Y 801 (1166)
Q Consensus 727 l~P~~~~al~~lA~~y~~l----GdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~a-y 801 (1166)
..|.....++.+|.+|... +++++|+.+|+++. |.++.+ ++.+|.+ |
T Consensus 208 ~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a-------------------------~~~Lg~~~~ 259 (452)
T 3e4b_A 208 RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS-------------------------WVSLAQLLY 259 (452)
T ss_dssp TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH-------------------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH-------------------------HHHHHHHHH
Confidence 9999999999999999776 79999999999987 554332 4568887 4
Q ss_pred --HHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC-----ChHHHHHHHHHHHhccccCCc
Q 039706 802 --FTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG-----RHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 802 --~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G-----~yeEAie~y~kALel~~e~~p 874 (1166)
...+++++|+.+|+++... .....+..+|.+|. .| ++++|+.+|++|+ +
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa~~----------------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-------~ 315 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGRAA----------------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-------G 315 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-------T
T ss_pred hCCCCCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-------C
Confidence 4689999999999997322 23556777899888 56 9999999999998 3
Q ss_pred hhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHh
Q 039706 875 FAAICFCNRAAAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEM----IRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~----lGdyeeAi~~yekALeL~ 941 (1166)
.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+++.+|.+|.. ..++.+|+.+|++|.+.-
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 467899999999887 3489999999999987 4578899999999985 469999999999998653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.6e-14 Score=141.21 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+|+.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|+++++..|.+...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------- 81 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV------- 81 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-------
Confidence 4577899999999999999999999999999999999999999999999999999999999999875432211
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
.... ....|++++|+.++++++...|.+..++..+|.++..+|++++|+..+++++...|.+.
T Consensus 82 -------------~a~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 144 (186)
T 3as5_A 82 -------------LGLT--YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG-- 144 (186)
T ss_dssp -------------HHHH--HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--
T ss_pred -------------HHHH--HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch--
Confidence 1111 12369999999999999999999999999999999999999999999999999877542
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES 819 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~ 819 (1166)
..+..+|.+|...|++++|+.++++++.
T Consensus 145 -----------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 145 -----------------------KVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1246799999999999999999999755
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=154.50 Aligned_cols=138 Identities=18% Similarity=0.066 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CC
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAI--------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG-----SD 674 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALel--------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~-----P~ 674 (1166)
..+++++|.+|..+|++++|+..|++++.+ +|....++..+|.+|..+|++++|+.+|++++.+. ++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 466888999999999999999999999988 46678899999999999999999999999999862 21
Q ss_pred chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHcc
Q 039706 675 VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFI--------SSYSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 675 n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel--------~P~~~~al~~lA~~y~~lG 746 (1166)
++ .....+...+.. +...|++++|+.++++++.+ .|....++..+|.+|..+|
T Consensus 123 ~~-----------------~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 123 HP-----------------DVAKQLNNLALL--CQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp CH-----------------HHHHHHHHHHHH--HHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred Ch-----------------HHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 11 111122222222 23589999999999999998 7777889999999999999
Q ss_pred CHHHHHHHHHHHHHhccC
Q 039706 747 KYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 747 dyeeAi~~lekALel~p~ 764 (1166)
++++|+.++++++.+.+.
T Consensus 184 ~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-15 Score=149.35 Aligned_cols=134 Identities=10% Similarity=-0.021 Sum_probs=119.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchh
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
||.++...|++++|+..++++ +...+.....++.+|.+|+..|+|++|+++|+++|+++ |.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a--------------~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~----p~~ 64 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGS--------------TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ----ERD 64 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHH--------------SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC
T ss_pred hHHHHHHcChHHHHHHHHHHh--------------cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC
Confidence 778888899999999999997 33445566777889999999999999999999999998 899
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH-HHHHHHHhhhhHHhh
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD-FHRLIALLTKQIEKS 948 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~-yekALeL~P~~~e~~ 948 (1166)
+.+|+++|.+|..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|... +++|++++|++....
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999887765 599999999987643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.1e-13 Score=170.14 Aligned_cols=289 Identities=11% Similarity=0.010 Sum_probs=191.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHH----------------HHH---------HHHHHHHcCChHH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPD------FLRV----------------QVR---------AANCHLALGEIED 660 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~------~~~A----------------~~~---------LA~lyl~lGd~ee 660 (1166)
.-.+.+|+..|.+.+|++.|++++ ++|. +... +.. +|.++..+|.+++
T Consensus 989 s~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHH
Confidence 556788999999999999999998 5665 2111 111 3888899999999
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH------HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHH
Q 039706 661 ASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS------ECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKL 734 (1166)
Q Consensus 661 Al~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~------e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~a 734 (1166)
|...|+++.. ...+...+.+....+.++.+.. ..|..++.++ ...|++++|+..|.++ +++..
T Consensus 1068 Af~IYkKa~~----~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAq--l~~G~~kEAIdsYiKA-----dD~sa 1136 (1630)
T 1xi4_A 1068 AFAIFRKFDV----NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQ--LQKGMVKEAIDSYIKA-----DDPSS 1136 (1630)
T ss_pred HHHHHHHcCC----HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHH--HhCCCHHHHHHHHHhc-----CChHH
Confidence 9999999741 1222233332222232222211 2333334333 3589999999999776 77888
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccc-ccCc-cchhhhh-hhhhHHHHHHHHHHHHcCCHHHHH
Q 039706 735 LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSM-ELDS-SESTKHV-SFRLWRCCLIFKSYFTLGRLEEAI 811 (1166)
Q Consensus 735 l~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l-~ld~-~~~~~~~-~~~~wr~~lLA~ay~~lGd~eeAl 811 (1166)
+..+|.++.++|+|++|+++|..+.+..+..... ..++.++ .++. ....... ......+..+|..++..|+|++|+
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id-t~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVE-TELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc-HHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 8999999999999999999999988876432100 0011000 0000 0000000 000112345777888888888888
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR 891 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG 891 (1166)
.+|.++ ..|..+|.++.+.|+|++|++++++|.. ..+|.+.+.++...|
T Consensus 1216 ~~Y~kA----------------------~ny~rLA~tLvkLge~q~AIEaarKA~n---------~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1216 LLYNNV----------------------SNFGRLASTLVHLGEYQAAVDGARKANS---------TRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHhh----------------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC---------HHHHHHHHHHHhhhh
Confidence 888763 2455667888888888888888888743 357777788888888
Q ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 892 HITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 892 q~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+|..|..+... +..+| +.+..++..|...|.|++|+..|++++.+.+.+....
T Consensus 1265 Ef~LA~~cgl~-Iiv~~---deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred HHHHHHHHHHh-hhcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 88888876653 44444 4555888999999999999999999999988876654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-15 Score=149.10 Aligned_cols=147 Identities=12% Similarity=-0.042 Sum_probs=126.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039706 737 MKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816 (1166)
Q Consensus 737 ~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lek 816 (1166)
.+|.++...|++++|+..+++++...|+++.. ++.+|.+|+..|++++|+.+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~-------------------------~~~la~~y~~~~~~~~A~~~~~~ 56 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIK-------------------------GFYFAKLYYEAKEYDLAKKYICT 56 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTT-------------------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHH-------------------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 46788888999999999999999887765432 46799999999999999999999
Q ss_pred HhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHH
Q 039706 817 HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896 (1166)
Q Consensus 817 Al~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeA 896 (1166)
++.. .+.....+..+|.++...|++++|+.+|+++++++ |.++.+|+++|.+|..+|++++|
T Consensus 57 al~~--------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 57 YINV--------------QERDPKAHRFLGLLYELEENTDKAVECYRRSVELN----PTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHH--------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHh--------------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHH
Confidence 8443 34456788889999999999999999999999998 89999999999999999999987
Q ss_pred HHH-HHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 897 IAD-CNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 897 i~~-lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
+.. +++|++++|+++.++..++.++...|+
T Consensus 119 a~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 119 AKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 765 599999999999999999999988775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.1e-14 Score=155.85 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=151.5
Q ss_pred CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCH
Q 039706 728 SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRL 807 (1166)
Q Consensus 728 ~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~ 807 (1166)
.|.....++.+|..+...|++++|+..|++++.++|++..+ +..+|.+|...|++
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a-------------------------~~~la~~~~~~g~~ 167 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEI-------------------------GLLLAETLIALNRS 167 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHH-------------------------HHHHHHHHHHTTCH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhH-------------------------HHHHHHHHHHCCCH
Confidence 48899999999999999999999999999999999976432 46799999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHH
Q 039706 808 EEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAY 887 (1166)
Q Consensus 808 eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay 887 (1166)
++|+..|++++...+. ....+...+..+...+++++|+..|++++.++ |.+..+++++|.+|
T Consensus 168 ~~A~~~l~~~~~~~p~--------------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~----P~~~~~~~~la~~l 229 (287)
T 3qou_A 168 EDAEAVLXTIPLQDQD--------------TRYQGLVAQIELLXQAADTPEIQQLQQQVAEN----PEDAALATQLALQL 229 (287)
T ss_dssp HHHHHHHTTSCGGGCS--------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC----TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhhcc--------------hHHHHHHHHHHHHhhcccCccHHHHHHHHhcC----CccHHHHHHHHHHH
Confidence 9999999986443332 23445556777888999999999999999998 99999999999999
Q ss_pred HHhhchhHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 888 KALRHITDAIADCNLAIALDGNY--LKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 888 ~~lGq~eeAi~~lekALeldP~~--~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
..+|++++|+..|.++++++|++ ..++..++.+|..+|+.++|+..|++++..
T Consensus 230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999 899999999999999999999999999864
|
| >2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-15 Score=153.49 Aligned_cols=139 Identities=25% Similarity=0.461 Sum_probs=99.2
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++||++||++++++||||.+.. ...+.++.|.+.|++|++||++|+||.+
T Consensus 9 ~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~--------------~~~~~~~~a~~~f~~i~~Ay~~L~dp~~ 74 (155)
T 2l6l_A 9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTD--------------VPAGTVEECVQKFIEIDQAWKILGNEET 74 (155)
T ss_dssp CSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCC--------------CTTHHHHHHHHHHHHHHHHHHHSSSHHH
T ss_pred CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------CchhHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 35999999999999999999999999999999998632 1124456788999999999999999999
Q ss_pred hcccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccCCCCCCCCceEEeeeeeeecccccccceee
Q 039706 1063 RSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYDNSAARGDIYSISFNLRIASNKRCYRPFVT 1142 (1166)
Q Consensus 1063 R~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~rG~~~~~~~~lsf~ea~~G~~K~i~ 1142 (1166)
|+.||..+....... .+ ... ..+.++ ...|++....|.+.|+||+.|.+..... ..|
T Consensus 75 R~~Yd~~~~~~~~~~--~~---~~~----~~~~~~----~m~~~e~~~~f~~~CrCG~~f~i~~~~l----~~~------ 131 (155)
T 2l6l_A 75 KREYDLQRCEDDLRN--VG---PVD----AQVYLE----EMSWNEGDHSFYLSCRCGGKYSVSKDEA----EEV------ 131 (155)
T ss_dssp HCHHHHHHHHHHHHT--TC---SSS----EEEETT----TSEEETTTTEEEEECSSSCEEEEETTHH----HHC------
T ss_pred HHHHHHHcchhhccc--cc---ccc----ceeeHH----HhccccCCcEEEEcCCCCCeEEecHHHh----CCC------
Confidence 999998775432221 11 000 111111 2346555567888999999987654321 122
Q ss_pred ceeeeee-eecceeeeeec
Q 039706 1143 IREFMAC-ACQWRYQIVES 1160 (1166)
Q Consensus 1143 ~~~~~~C-~C~G~~q~~~~ 1160 (1166)
..+.| .|.=.++++..
T Consensus 132 --~~v~C~sCSl~~~v~~~ 148 (155)
T 2l6l_A 132 --SLISCDTCSLIIELLHY 148 (155)
T ss_dssp --CEEECSSSSCEEEEECC
T ss_pred --CEEECCCCceEEEEEEc
Confidence 34679 99988877643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9e-13 Score=169.71 Aligned_cols=265 Identities=14% Similarity=0.086 Sum_probs=181.3
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
...+.+|+++|.++...|++++|+..|.+| +++.+|+++|.++.++|++++|+++|..|++..++...+.. +..
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~-Laf 1175 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE-LIF 1175 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH-HHH
Confidence 345678999999999999999999999886 88899999999999999999999999999988765322111 222
Q ss_pred HHHHhhhHHhHHHH--------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHH
Q 039706 685 ASDGLQKAQKVSEC--------MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCE 756 (1166)
Q Consensus 685 a~~~L~k~~~~~e~--------~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~le 756 (1166)
++..+.+...+..+ +...+.. ....|+|++|+.+|.++ ..|..+|.+|.++|++++|++.++
T Consensus 1176 aYAKl~rleele~fI~~~n~ad~~~iGd~--le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFINGPNNAHIQQVGDR--CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred HHHhhcCHHHHHHHHhCCCHHHHHHHHHH--HHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22222222211111 1111111 22356666666666654 355556666666666666666666
Q ss_pred HHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV 836 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~ 836 (1166)
++... . .|...+.++...|+|..|..+.... .
T Consensus 1246 KA~n~-----~-------------------------aWkev~~acve~~Ef~LA~~cgl~I------------------i 1277 (1630)
T 1xi4_A 1246 KANST-----R-------------------------TWKEVCFACVDGKEFRLAQMCGLHI------------------V 1277 (1630)
T ss_pred HhCCH-----H-------------------------HHHHHHHHHhhhhHHHHHHHHHHhh------------------h
Confidence 55211 0 1233455555566666665554321 1
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHH--HhhchhHHHHHHHHHHHhCC-----C
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYK--ALRHITDAIADCNLAIALDG-----N 909 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~--~lGq~eeAi~~lekALeldP-----~ 909 (1166)
..+..+..++..|...|.|++|+.+|+.+|.++ +.+...|..+|.+|. +.++..++++.|...+.+.| .
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le----raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e 1353 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE 1353 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHH
Confidence 123344467888899999999999999999888 778888877777766 55778889999998888877 7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 910 YLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 910 ~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
.+..|..+..+|.+-++|+.|+..+-..
T Consensus 1354 ~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1354 QAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 7888999999999999999998655444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=146.44 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..++.+|..++..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++.+.| ++.....+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~---- 81 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK---- 81 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH----
Confidence 34677999999999999999999999999999999999999999999999999999999999988 5422111100
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
+. ... .+....|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|.....
T Consensus 82 ----------~~----~~~---~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 144 (176)
T 2r5s_A 82 ----------LE----LHQ---QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDG 144 (176)
T ss_dssp ----------HH----HHH---HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTT
T ss_pred ----------HH----HHh---hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChH
Confidence 00 000 1122357999999999999999999999999999999999999999999998865321
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
..+..++.+|..+|+.++|+..|+++
T Consensus 145 -----------------------~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 145 -----------------------EVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp -----------------------HHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 11456899999999999999999986
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-12 Score=146.52 Aligned_cols=252 Identities=11% Similarity=0.049 Sum_probs=178.8
Q ss_pred HHHHHHHcCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 614 RAATRMALGRMR-DALSDCMLAVAIDPDFLRVQVRAANCHLALGE----------IEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 614 rA~ayl~lG~y~-eAI~~fekALeldP~~~~A~~~LA~lyl~lGd----------~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
........|.+. +|+..+.++|.++|++..+|..++.++..++. +++++..+..++..+|.+...+...
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344455678876 79999999999999999999999999998876 6788888888888888765443222
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh
Q 039706 683 VEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK-YEEVIQLCEQTFHF 761 (1166)
Q Consensus 683 ~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd-yeeAi~~lekALel 761 (1166)
..++.......+++++.+++++++++|.+..+|..++.++..++. ++++++++.++++.
T Consensus 115 --------------------~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 115 --------------------CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp --------------------HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --------------------HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 111111111257788888888888888888888888888888887 57888888888888
Q ss_pred ccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHH
Q 039706 762 AEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLC 841 (1166)
Q Consensus 762 ~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~ 841 (1166)
+|.+..+ | ..++.++..+.....+ +.
T Consensus 175 ~p~N~SA-----------------------W--~~R~~ll~~l~~~~~~-----------~~------------------ 200 (331)
T 3dss_A 175 NFSNYSS-----------------------W--HYRSCLLPQLHPQPDS-----------GP------------------ 200 (331)
T ss_dssp CSCCHHH-----------------------H--HHHHHHHHHHSCCC---------------------------------
T ss_pred CCCCHHH-----------------------H--HHHHHHHHHhhhcccc-----------cc------------------
Confidence 7766433 2 2233333332210000 00
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh-----------hchhHHHHHHHHHHHhCCCh
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL-----------RHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l-----------Gq~eeAi~~lekALeldP~~ 910 (1166)
.+ -...+.++++++++.++|.++ |.+..+|+.+..++... +.++++++.+.+++++.|++
T Consensus 201 ---~~--~~~~~~~~eEle~~~~ai~~~----P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 201 ---QG--RLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ---cc--ccchHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 00 001145889999999999998 99999997665555544 67899999999999999999
Q ss_pred HHHHHHHHHHHH---HhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 911 LKAISRRATLYE---MIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 911 ~~A~~~LA~ay~---~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.-++..++.+.. ..+.+++....|.++++++|-...-+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 665555554433 25778899999999999999876544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=152.97 Aligned_cols=168 Identities=14% Similarity=0.038 Sum_probs=141.5
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
+.....++.+|..++..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++..+|+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~----- 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG----- 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH-----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH-----
Confidence 334456778999999999999999999999999999999999999999999999999999999999999632110
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
.... +.....++...|+..|++++..+|+++.+++.+|.+|..+|++++|+..|++++..+|.
T Consensus 189 ---------------~~~~--~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 189 ---------------LVAQ--IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp ---------------HHHH--HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------------HHHH--HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 0011 11112456778999999999999999999999999999999999999999999999886
Q ss_pred CCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 765 NSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 765 n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
+... ..+..++.+|..+|+.++|+..|+++
T Consensus 252 ~~~~-----------------------~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 252 AADG-----------------------QTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp GGGG-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccc-----------------------hHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 5211 12456899999999999999999986
|
| >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-14 Score=136.57 Aligned_cols=72 Identities=32% Similarity=0.514 Sum_probs=64.0
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||.+.++.++|+++||+++++||||+++.. ..+.++|++|++||+||+||.+
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~~L~d~~~ 75 (99)
T 2yua_A 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS--------------------AEAAERFTRISQAYVVLGSATL 75 (99)
T ss_dssp SSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC--------------------SHHHHHHHHHHHHHHHTTSHHH
T ss_pred ccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------HHHHHHHHHHHHHHHHHCCHHH
Confidence 46999999999999999999999999999999998531 3578899999999999999999
Q ss_pred hcccchhhhhhh
Q 039706 1063 RSRYDLEEETRN 1074 (1166)
Q Consensus 1063 R~~YD~~~~~~~ 1074 (1166)
|+.||..+....
T Consensus 76 R~~YD~~l~~~e 87 (99)
T 2yua_A 76 RRKYDRGLLSDE 87 (99)
T ss_dssp HHHHHHTCCCHH
T ss_pred HHHHHHhccccc
Confidence 999998665433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-14 Score=144.10 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 039706 733 KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIA 812 (1166)
Q Consensus 733 ~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~ 812 (1166)
..++.+|.+++..|++++|+..|+++++++|++..+ +..+|.+|...|++++|+.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a-------------------------~~~la~~~~~~g~~~~A~~ 61 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDV-------------------------KLAKADCLLETKQFELAQE 61 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHH-------------------------HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH-------------------------HHHHHHHHHHCCCHHHHHH
Confidence 445666777777777777777777777776655322 3456777777777777777
Q ss_pred HHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH-HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh
Q 039706 813 ALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE-AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR 891 (1166)
Q Consensus 813 ~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~-~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG 891 (1166)
.+++++...+ . ...+...+.+ +...+...+|+..|++++.++ |.+..+++++|.++..+|
T Consensus 62 ~~~~a~~~~p-~--------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~----P~~~~~~~~la~~~~~~g 122 (176)
T 2r5s_A 62 LLATIPLEYQ-D--------------NSYKSLIAKLELHQQAAESPELKRLEQELAAN----PDNFELACELAVQYNQVG 122 (176)
T ss_dssp HHTTCCGGGC-C--------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhccC-C--------------hHHHHHHHHHHHHhhcccchHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcc
Confidence 7766533222 1 0111111212 122234456899999999998 889999999999999999
Q ss_pred chhHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 892 HITDAIADCNLAIALDGNY--LKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 892 q~eeAi~~lekALeldP~~--~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
++++|+..|+++++++|++ ..++..+|.+|..+|++++|+..|++++..
T Consensus 123 ~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 123 RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 9999999999999999986 669999999999999999999999999853
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-13 Score=164.07 Aligned_cols=160 Identities=14% Similarity=0.020 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
.|++++|+..|+++++++|.+..++..+|.+|..+|++++|+..|+++++++|++..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----------------------- 58 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE----------------------- 58 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH-----------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------------
Confidence 367888888888888888888888888888888888888888888888887765421
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
.+..+ |.++...|++++|+.+|+++++++
T Consensus 59 --~~~~l------------------------------------------------g~~~~~~g~~~~A~~~~~~al~~~- 87 (568)
T 2vsy_A 59 --AVARL------------------------------------------------GRVRWTQQRHAEAAVLLQQASDAA- 87 (568)
T ss_dssp --HHHHH------------------------------------------------HHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --HHHHH------------------------------------------------HHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 12234 555555555555555566666555
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHhhhhHHh
Q 039706 871 ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI---RDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l---GdyeeAi~~yekALeL~P~~~e~ 947 (1166)
|.+..+|+++|.+|..+|++++|+..|+++++++|++..++..+|.+|..+ |++++|+..|++++++.|.....
T Consensus 88 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 88 ---PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence 555566666666666666666666666666666666666666666666666 66666666666666666655443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=147.20 Aligned_cols=151 Identities=11% Similarity=-0.046 Sum_probs=127.1
Q ss_pred hHHHHHHHHHhchH--HHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CChHHHHH
Q 039706 595 ASAETIAAQEACEK--WRLSNRAATRMALG--RMRDALSDCMLAVAIDPDFLRVQVRAANCH----LAL---GEIEDASK 663 (1166)
Q Consensus 595 A~a~~~aAIe~~e~--~ay~nrA~ayl~lG--~y~eAI~~fekALeldP~~~~A~~~LA~ly----l~l---Gd~eeAl~ 663 (1166)
+...+..+|..+|. .+|+.|+.++..++ ++++|+..+.++|.++|++..+|..++.++ ..+ +++++++.
T Consensus 52 aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 52 ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 44555555555543 56778999999999 999999999999999999999999999999 777 89999999
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHH--HHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 664 YFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAE--IALGVIDEALFISSYSEKLLEMKAEA 741 (1166)
Q Consensus 664 ~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~e--eALe~lekALel~P~~~~al~~lA~~ 741 (1166)
.+.++++.+|.+..++....- ++. ..+.++ ++++.++++++.+|.+..+|..++.+
T Consensus 132 ~~~~~l~~~pkny~aW~~R~~--------------------vl~--~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 132 ILEAMLSSDPKNHHVWSYRKW--------------------LVD--TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH--------------------HHH--HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH--------------------HHH--HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999998665433221 121 245566 99999999999999999999999999
Q ss_pred HHHccC------HHHHHHHHHHHHHhccCCCC
Q 039706 742 LFMLRK------YEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 742 y~~lGd------yeeAi~~lekALel~p~n~~ 767 (1166)
+..+++ ++++++++.+++..+|.+..
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S 221 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPS 221 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence 999998 99999999999999998754
|
| >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-14 Score=131.56 Aligned_cols=69 Identities=43% Similarity=0.627 Sum_probs=63.3
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||++|||.+.++.++|+++||+++++||||+++. ..++++|++|++||++|+||.+
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~a~~~f~~i~~Ay~~L~d~~~ 64 (88)
T 2ctr_A 6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS---------------------PDAEAKFREIAEAYETLSDANR 64 (88)
T ss_dssp CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS---------------------HHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hHHHHHHHHHHHHHHHHCCHHH
Confidence 4589999999999999999999999999999999752 4688999999999999999999
Q ss_pred hcccchhhhh
Q 039706 1063 RSRYDLEEET 1072 (1166)
Q Consensus 1063 R~~YD~~~~~ 1072 (1166)
|+.||..+..
T Consensus 65 R~~Yd~~~~~ 74 (88)
T 2ctr_A 65 RKEYDTLGHS 74 (88)
T ss_dssp HHHHHHTCHH
T ss_pred HHHHHHhCcc
Confidence 9999997754
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-13 Score=149.72 Aligned_cols=211 Identities=12% Similarity=-0.029 Sum_probs=172.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhccCCCCCccc-cCcccccCcc
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMK-------AEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA-NGQSMELDSS 781 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~l-------A~~y~~lGdyeeAi~~lekALel~p~n~~a~~~-~g~~l~ld~~ 781 (1166)
..+++..|+..|.+++.++|...++|..+ +.++..++++.+++..+++.+.+.|....++.. .+..-.+...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 37999999999999999999999999999 899999999999999999999999988776554 3322001111
Q ss_pred chhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHH
Q 039706 782 ESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEH 861 (1166)
Q Consensus 782 ~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~ 861 (1166)
... +--....++.+|...|+|++|++.|+.+.. ..+..+ ..+.+|.++++.++|++|+.+
T Consensus 98 v~~-----r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------------~~p~~~-~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 98 VTS-----PLAITMGFAACEAAQGNYADAMEALEAAPV--------------AGSEHL-VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp CSS-----HHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------------TTCHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred cCC-----HhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------cCCchH-HHHHHHHHHHHcCCHHHHHHH
Confidence 111 111234578889999999999999988532 233445 677789999999999999999
Q ss_pred HHHHHhccccCCch-hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--CC-hHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 862 YTAALSCTVESHPF-AAICFCNRAAAYKALRHITDAIADCNLAIALD--GN-YLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 862 y~kALel~~e~~p~-~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--P~-~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
|+.++... .+. ...+++++|.++..+|++++|+.+|++++... |. ..++++.+|.++..+|+.++|...|+++
T Consensus 158 l~~a~~~~---d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 158 VKSAGKWP---DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HTTGGGCS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhhccC---CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99887642 133 24689999999999999999999999998654 55 7789999999999999999999999999
Q ss_pred HHHhhh
Q 039706 938 IALLTK 943 (1166)
Q Consensus 938 LeL~P~ 943 (1166)
+...|.
T Consensus 235 ~a~~P~ 240 (282)
T 4f3v_A 235 QTTHPE 240 (282)
T ss_dssp HHHSCC
T ss_pred HhcCCc
Confidence 999988
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.2e-14 Score=141.09 Aligned_cols=109 Identities=16% Similarity=0.042 Sum_probs=103.2
Q ss_pred hccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 832 LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 832 L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
+...+..+..++.+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|+|++|+..|+++++++|+++
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 33456778889999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.+|+++|.+|..+|++++|+..|++++++.|+.
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999998765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-13 Score=137.05 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=101.9
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC--------CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES--------HPFAAICFCNRAAAYKALRHITDAIADCNLAIAL- 906 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~--------~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel- 906 (1166)
...+..++++|+.++..|+|++|+..|++||+++|.. .|.++.+|+|+|.++..+|+|++|+.+|++||++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 4467778899999999999999999999999999541 1234569999999999999999999999999999
Q ss_pred ------CCChHHHH----HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 907 ------DGNYLKAI----SRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 907 ------dP~~~~A~----~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+|++..+| +++|.++..+|++++|+.+|++++++.|++....
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999 9999999999999999999999999999976543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-13 Score=134.26 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=101.0
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--------cC------CchhHHHHHHHHHHHHHhhchhHHHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--------ES------HPFAAICFCNRAAAYKALRHITDAIADCN 901 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--------e~------~p~~a~a~~nlA~ay~~lGq~eeAi~~le 901 (1166)
...+..+..+|+.++..|+|++|+.+|++||.+.+ .. .|....+|+++|.||..+|+|++|+.+|+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34577788899999999999999999999999811 00 27788999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 902 LAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 902 kALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
++|.++|.++.+|+.+|.+|..+|++++|+.+|++++++.|++.+
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 132 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH
Confidence 999999999999999999999999999999999999999999863
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-15 Score=169.17 Aligned_cols=150 Identities=16% Similarity=0.048 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCch-hhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 792 WRCCLIFKSYFTLGRLEEAIAALERHESGNGGKM-LESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 792 wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~-le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
..+..+|.+|+..|++++|+..|++++...+... +............+..+.++|.+++..|+|++|+.+|++||.++
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3457799999999999999999999877544421 00011111223346788899999999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH-HHHHHHHHHHhhhhH
Q 039706 871 ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA-ASDFHRLIALLTKQI 945 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA-i~~yekALeL~P~~~ 945 (1166)
|.++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..++++++| ...|++++...+...
T Consensus 227 ---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 299 (336)
T 1p5q_A 227 ---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 299 (336)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 889999999999999999999999999999999999999999999999999999999 567888887655543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=144.24 Aligned_cols=188 Identities=11% Similarity=0.062 Sum_probs=146.4
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHH
Q 039706 729 SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLE 808 (1166)
Q Consensus 729 P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~e 808 (1166)
|.....+...+..++..|+|++|+..+.++++..+.... ....+..+..+|.+|...|+++
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 132 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-------------------FQQFLQWQYYVAAYVLKKVDYE 132 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-------------------HHHHHHHHHHHHHHHHTSSCHH
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-------------------HHHHHHHHHHHHHHHhcCCCHH
Confidence 344456677889999999999999999999988653211 0111122355888899999999
Q ss_pred HHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc---cCCchhHHHHHHHHH
Q 039706 809 EAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV---ESHPFAAICFCNRAA 885 (1166)
Q Consensus 809 eAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~---e~~p~~a~a~~nlA~ 885 (1166)
+|+.++++++..... .......+..+..+|.+|...|+|++|+.+|++|+.+.. ........+++++|.
T Consensus 133 ~A~~~~~~al~~~~~--------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 133 YCILELKKLLNQQLT--------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HHHHHHHHHHTTCCC--------SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHH
Confidence 999999998653322 112223466788999999999999999999999996532 111123379999999
Q ss_pred HHHHhhchhHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHhhCHHHH-HHHHHHHHHHhhh
Q 039706 886 AYKALRHITDAIADCNLAIALDGN------YLKAISRRATLYEMIRDYDHA-ASDFHRLIALLTK 943 (1166)
Q Consensus 886 ay~~lGq~eeAi~~lekALeldP~------~~~A~~~LA~ay~~lGdyeeA-i~~yekALeL~P~ 943 (1166)
+|..+|+|++|+.++++++.+.+. ...+++.+|.+|..+|++++| ..+|++|+.+...
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998643 378999999999999999999 7889999988644
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.5e-13 Score=129.39 Aligned_cols=117 Identities=18% Similarity=0.110 Sum_probs=100.8
Q ss_pred HhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 604 EACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 604 e~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
++..+.+|.++|.+|+..|+|++|+..|+++|+++|.+..+|+.+|.+|..+|++++|+..|+++++++|++...+..+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l- 87 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK- 87 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH-
Confidence 3444456677999999999999999999999999999999999999999999999999999999999999965432222
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEAL 742 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y 742 (1166)
+.+ +...|++++|+..|+++++++|.+..++..++.|+
T Consensus 88 -------------------g~~--~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 -------------------AAC--LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp -------------------HHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred -------------------HHH--HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 222 23479999999999999999999999999988874
|
| >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-14 Score=131.41 Aligned_cols=75 Identities=31% Similarity=0.558 Sum_probs=65.9
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||.+.++.++||++|++++++||||+++.. ...+.+..++++|++|++||++|+||.+
T Consensus 15 ~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~--------------~~~~~~~~~~~~f~~i~~Ay~~L~d~~~ 80 (94)
T 1wjz_A 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSAD--------------VPAGTMEECMQKFIEIDQAWKILGNEET 80 (94)
T ss_dssp CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTT--------------CCHHHHHHHHHHHHHHHHHHHHHSSSSH
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------CChhhhHHHHHHHHHHHHHHHHHCCHHH
Confidence 46999999999999999999999999999999997521 1234457889999999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 81 R~~YD~~l~ 89 (94)
T 1wjz_A 81 KKKYDLQRS 89 (94)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHcc
Confidence 999999764
|
| >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.8e-14 Score=126.74 Aligned_cols=70 Identities=46% Similarity=0.679 Sum_probs=63.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++|+++|++++++||||+.+.. .+.++++|++|++||++|+||.+
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------------------~~~a~~~f~~i~~Ay~~L~d~~~ 68 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN-------------------KEEAERRFKQVAEAYEVLSDAKK 68 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT-------------------HHHHHHHHHHHHHHHHHHSSTTH
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------------------HHHHHHHHHHHHHHHHHHCCHHH
Confidence 36899999999999999999999999999999997521 24788999999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 69 R~~YD~~g~ 77 (82)
T 2ej7_A 69 RDIYDRYGS 77 (82)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHcCc
Confidence 999998654
|
| >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-14 Score=131.60 Aligned_cols=70 Identities=51% Similarity=0.758 Sum_probs=63.2
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++|+++|++++++||||+.+.. .+.++++|++|++||++|+||.+
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------------------~~~a~~~f~~i~~Ay~~L~d~~~ 68 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN-------------------KEEAEKKFKLVSEAYEVLSDSKK 68 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC-------------------SHHHHHHHHHHHHHHHHHHSHHH
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc-------------------HHHHHHHHHHHHHHHHHHCCHHH
Confidence 35899999999999999999999999999999997631 24788999999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 69 R~~Yd~~~~ 77 (92)
T 2dmx_A 69 RSLYDRAGC 77 (92)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhCc
Confidence 999999764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-13 Score=160.13 Aligned_cols=165 Identities=15% Similarity=0.078 Sum_probs=106.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHH
Q 039706 621 LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQ 700 (1166)
Q Consensus 621 lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~ 700 (1166)
.|++++|+..|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------------------------- 55 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-------------------------- 55 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--------------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------
Confidence 478899999999999999999999999999999999999999888887766554
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 701 RSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 701 ~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
+..++..+|.+|..+|++++|+.+|+++++++|++..
T Consensus 56 ------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------- 92 (568)
T 2vsy_A 56 ------------------------------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG------------- 92 (568)
T ss_dssp ------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------
T ss_pred ------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH-------------
Confidence 4456677788888888888888888888877664311
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie 860 (1166)
.+..+|.++...|++++|++
T Consensus 93 ------------------------------------------------------------~~~~la~~~~~~g~~~~A~~ 112 (568)
T 2vsy_A 93 ------------------------------------------------------------IALWLGHALEDAGQAEAAAA 112 (568)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHcCCHHHHHH
Confidence 11223555566666666666
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHh---hchhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 861 HYTAALSCTVESHPFAAICFCNRAAAYKAL---RHITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 861 ~y~kALel~~e~~p~~a~a~~nlA~ay~~l---Gq~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
+|+++++++ |.+..++.++|.++..+ |++++|+..|+++++.+|....++..++
T Consensus 113 ~~~~al~~~----p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 113 AYTRAHQLL----PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 666666666 66666777777777777 7777777777777777777666666555
|
| >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.1e-14 Score=125.46 Aligned_cols=67 Identities=52% Similarity=0.739 Sum_probs=61.8
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||++.++.++|+++|++++++||||+.+. ..+++.|+.|++||++|+||.+|
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~L~d~~~R 61 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---------------------PGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---------------------TTHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHHCCHHHH
Confidence 489999999999999999999999999999999752 25788999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||..+.
T Consensus 62 ~~Yd~~~~ 69 (77)
T 1hdj_A 62 EIFDRYGE 69 (77)
T ss_dssp HHHHHTCG
T ss_pred HHHHHHcc
Confidence 99999765
|
| >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-14 Score=126.58 Aligned_cols=69 Identities=41% Similarity=0.589 Sum_probs=62.5
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++|+++|++++++||||+.+.. +.++++|++|++||++|+||.+
T Consensus 6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~~L~d~~~ 65 (79)
T 2dn9_A 6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD--------------------PKAKEKFSQLAEAYEVLSDEVK 65 (79)
T ss_dssp CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC--------------------TTHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------HHHHHHHHHHHHHHHHHCCHHH
Confidence 46899999999999999999999999999999998631 3578899999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 66 R~~YD~~g~ 74 (79)
T 2dn9_A 66 RKQYDAYGS 74 (79)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhccC
Confidence 999998653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.43 E-value=9e-13 Score=128.79 Aligned_cols=103 Identities=23% Similarity=0.380 Sum_probs=95.7
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh------
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------ 910 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------ 910 (1166)
..+.++.++|+.+++.|+|++|+.+|++||+++ |.++.+|+++|.+|..+|++++|+.+|+++|+++|++
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 456778899999999999999999999999998 8899999999999999999999999999999998865
Q ss_pred -HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 911 -LKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 911 -~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
..+|.++|.+|..+|++++|+..|++++++.|+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 468999999999999999999999999998764
|
| >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-13 Score=125.11 Aligned_cols=68 Identities=47% Similarity=0.704 Sum_probs=62.3
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++|+++|++++++||||+.+. ..+.+.|++|++||++|+||.+
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~L~d~~~ 64 (78)
T 2ctp_A 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA---------------------PGATEAFKAIGTAYAVLSNPEK 64 (78)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS---------------------HHHHHHHHHHHHHHHHHTSHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHHCCHHH
Confidence 4689999999999999999999999999999999752 3578899999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 65 R~~YD~~~~ 73 (78)
T 2ctp_A 65 RKQYDQFGS 73 (78)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHcCc
Confidence 999998664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=123.88 Aligned_cols=104 Identities=30% Similarity=0.371 Sum_probs=98.6
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
.+..+..+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 45677888999999999999999999999998 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
|.+|..+|++++|+..|++++++.|+..
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTKDAEVN 106 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhCcccC
Confidence 9999999999999999999999995543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-12 Score=130.48 Aligned_cols=110 Identities=33% Similarity=0.325 Sum_probs=103.5
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
....+..+..+|.+++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW 82 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34567788889999999999999999999999998 88899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+.+|.+|..+|++++|+.+|++++++.|++.+.+
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 9999999999999999999999999999886543
|
| >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-14 Score=124.07 Aligned_cols=66 Identities=44% Similarity=0.684 Sum_probs=59.3
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++|+++|++++++||||+.+. +.+.|+.|++||++|+||.+
T Consensus 7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~-----------------------~~~~f~~i~~Ay~~L~d~~~ 63 (73)
T 2och_A 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD-----------------------GAEQFKQISQAYEVLSDEKK 63 (73)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT-----------------------CHHHHHHHHHHHHHHTSHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC-----------------------HHHHHHHHHHHHHHHCCHHH
Confidence 3589999999999999999999999999999999752 24689999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 64 R~~YD~~g~ 72 (73)
T 2och_A 64 RQIYDQGGE 72 (73)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhcCC
Confidence 999998653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-12 Score=142.27 Aligned_cols=199 Identities=13% Similarity=0.050 Sum_probs=165.9
Q ss_pred HHHHHhhcCCCHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhccCCCCCccc
Q 039706 703 AQLLQNKTSNDAE-IALGVIDEALFISSYSEKLLEMKAEALFMLRK----------YEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 703 ~~~l~~~~~gd~e-eALe~lekALel~P~~~~al~~lA~~y~~lGd----------yeeAi~~lekALel~p~n~~a~~~ 771 (1166)
..++.....|++. +|+.+++++|.++|.+..+|..++.++..++. +++++..+..++..+|++..+
T Consensus 34 ~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~a--- 110 (331)
T 3dss_A 34 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT--- 110 (331)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH---
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHH---
Confidence 3333334466665 79999999999999999999999999998887 789999999999999987432
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLG--RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lG--d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
|...+.++..++ .+++++.++.+++. ..+....+|...+.++
T Consensus 111 ----------------------W~hR~wlL~~l~~~~~~~EL~~~~k~l~--------------~dprNy~AW~~R~~vl 154 (331)
T 3dss_A 111 ----------------------WHHRCWLLSRLPEPNWARELELCARFLE--------------ADERNFHCWDYRRFVA 154 (331)
T ss_dssp ----------------------HHHHHHHHHHCSSCCHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHhccCcccHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHH
Confidence 344566677777 48999999999744 3344456666678899
Q ss_pred HHcCC-hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh--------------hchhHHHHHHHHHHHhCCChHHHH
Q 039706 850 FQAGR-HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL--------------RHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 850 ~~~G~-yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l--------------Gq~eeAi~~lekALeldP~~~~A~ 914 (1166)
...+. ++++++++.++|..+ |.+..+|++++.++..+ +.++++++++.++|.++|++..+|
T Consensus 155 ~~l~~~~~eel~~~~~~I~~~----p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW 230 (331)
T 3dss_A 155 AQAAVAPAEELAFTDSLITRN----FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 230 (331)
T ss_dssp HHTTCCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHhCcCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 99998 699999999999998 99999999999999988 779999999999999999999999
Q ss_pred HHHHHHHHHh-----------hCHHHHHHHHHHHHHHhhhh
Q 039706 915 SRRATLYEMI-----------RDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 915 ~~LA~ay~~l-----------GdyeeAi~~yekALeL~P~~ 944 (1166)
+.+..++... +.+++++..+++++++.|++
T Consensus 231 ~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 231 FYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp HHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 8666555544 56899999999999999876
|
| >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-13 Score=129.00 Aligned_cols=66 Identities=44% Similarity=0.711 Sum_probs=60.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||.+.++.++|+++|++++++||||+++. ..++|++|++||++|+||.+|
T Consensus 8 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----------------------~~~~f~~i~~Ay~~L~d~~~R 64 (92)
T 2o37_A 8 TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG-----------------------DTEKFKEISEAFEILNDPQKR 64 (92)
T ss_dssp CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC-----------------------CHHHHHHHHHHHHHHTSHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------------------hHHHHHHHHHHHHHHCCHHHH
Confidence 589999999999999999999999999999999752 235899999999999999999
Q ss_pred cccchhhhh
Q 039706 1064 SRYDLEEET 1072 (1166)
Q Consensus 1064 ~~YD~~~~~ 1072 (1166)
+.||..+..
T Consensus 65 ~~YD~~~~~ 73 (92)
T 2o37_A 65 EIYDQYGLE 73 (92)
T ss_dssp HHHHHHCHH
T ss_pred HHHHHHCHH
Confidence 999997753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=130.83 Aligned_cols=109 Identities=16% Similarity=0.071 Sum_probs=103.0
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKA 913 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A 913 (1166)
..+.....+..+|..++..|+|++|+..|++++.++ |.++.+|+++|.+|..+|++++|+..|++++.++|+++.+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 91 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 345677788889999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
++.+|.+|..+|++++|+..|++++++.|.+.+
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999999999999999999999997654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=142.97 Aligned_cols=194 Identities=10% Similarity=0.033 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+++.+|.+++..|+|++|+..|++++.++|++..+++.+|.+|..+|++++|+..|+++++++|+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------- 70 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------------- 70 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------
Confidence 4567789999999999999999999999999999999999999999999999999888887766554
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
+..+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 71 -------------------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 107 (281)
T 2c2l_A 71 -------------------------------------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (281)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh
Confidence 4567788999999999999999999999999997643
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
.+. ..+|.... ..++...
T Consensus 108 ~~~------------------~~~~~~~~----------~~~~~~~---------------------------------- 125 (281)
T 2c2l_A 108 NFG------------------DDIPSALR----------IAKKKRW---------------------------------- 125 (281)
T ss_dssp CCC------------------SHHHHHHH----------HHHHHHH----------------------------------
T ss_pred hHH------------------HHHHHHHH----------HHHHHHH----------------------------------
Confidence 200 00011000 0000000
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh-hC
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI-RD 926 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l-Gd 926 (1166)
........ +....+...++..+ .|++++|++.++++++++|.+......++.++... +.
T Consensus 126 --------------~~~~~~~~----~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 185 (281)
T 2c2l_A 126 --------------NSIEERRI----HQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKY 185 (281)
T ss_dssp --------------HHHHHTCC----CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHH----hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHH
Confidence 00001111 23333334444433 68999999999999999999888888888777766 66
Q ss_pred HHHHHHHHHHHHH
Q 039706 927 YDHAASDFHRLIA 939 (1166)
Q Consensus 927 yeeAi~~yekALe 939 (1166)
+++|...|+++.+
T Consensus 186 ~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 186 MADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHHSSC
T ss_pred HHHHHHHHHhhhc
Confidence 8888888887754
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=146.32 Aligned_cols=229 Identities=10% Similarity=-0.082 Sum_probs=169.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRA-------ANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~L-------A~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
++.+|.-+ .-+++..|+..|.+++.++|+...+|+.+ +.++..++++.+++..+++++.+.|.....+..+
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~- 87 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI- 87 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC-
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc-
Confidence 34556665 58999999999999999999999999999 8999999999999999999999988732211000
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS-SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~-P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~ 762 (1166)
.|-|-+ |..- -.-.+++..+|.+|...|+|++|++.|..++...
T Consensus 88 ---------------------------~g~y~~--------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~ 132 (282)
T 4f3v_A 88 ---------------------------GGLYGD--------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG 132 (282)
T ss_dssp ---------------------------CTTTCC--------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT
T ss_pred ---------------------------CCcccc--------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 000000 0000 0124567778888888888888888887766544
Q ss_pred cCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHH
Q 039706 763 EKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCR 842 (1166)
Q Consensus 763 p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l 842 (1166)
|... ..+.+|.+++..+++++|+.+|+++.... ........+
T Consensus 133 p~~~--------------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~~------------d~~~~~~a~ 174 (282)
T 4f3v_A 133 SEHL--------------------------VAWMKAVVYGAAERWTDVIDQVKSAGKWP------------DKFLAGAAG 174 (282)
T ss_dssp CHHH--------------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGCS------------CHHHHHHHH
T ss_pred CchH--------------------------HHHHHHHHHHHcCCHHHHHHHHHHhhccC------------CcccHHHHH
Confidence 3211 13557788888889998888887642211 111123466
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCch-hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF-AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~-~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
+.+|.++..+|++++|+.+|++++... ..|. ...+++++|.|+.++|+.++|+..|++++..+|+ ..++..|
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 778999999999999999999998532 1133 6779999999999999999999999999999998 7766555
|
| >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-13 Score=127.46 Aligned_cols=68 Identities=43% Similarity=0.646 Sum_probs=62.5
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||.+.++.++|+++||+++++||||+++. ..+++.|++|++||++|+||.+
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~L~d~~~ 74 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD---------------------PGAEDRFIQISKAYEILSNEEK 74 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS---------------------TTHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHHHCCHHH
Confidence 4699999999999999999999999999999999762 3578899999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 75 R~~YD~~g~ 83 (88)
T 2cug_A 75 RTNYDHYGS 83 (88)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHcCC
Confidence 999999764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-12 Score=139.80 Aligned_cols=183 Identities=11% Similarity=0.070 Sum_probs=143.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 039706 735 LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAAL 814 (1166)
Q Consensus 735 l~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~l 814 (1166)
+...+..++..++|++|+..+++++...+..+. ....+..+..+|.++...+++++|+.+|
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~Ai~~~ 138 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-------------------FQQFLQWQYYVAAYVLKKVDYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHH-------------------HHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChH-------------------HHHHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 344578889999999999999999886543211 0011122345788888889999999999
Q ss_pred HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc---cCCchhHHHHHHHHHHHHHhh
Q 039706 815 ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV---ESHPFAAICFCNRAAAYKALR 891 (1166)
Q Consensus 815 ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~---e~~p~~a~a~~nlA~ay~~lG 891 (1166)
++++..... .......+..+..+|.+|...|+|++|+.+|++|+++.. ...+..+.+++++|.+|..+|
T Consensus 139 ~~al~~~~~--------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 3u3w_A 139 KKLLNQQLT--------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp HHHHHTCCC--------CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcc--------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh
Confidence 998663222 111223466788999999999999999999999996432 234566779999999999999
Q ss_pred chhHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHhhhh
Q 039706 892 HITDAIADCNLAIALDGNY------LKAISRRATLYEMIR-DYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 892 q~eeAi~~lekALeldP~~------~~A~~~LA~ay~~lG-dyeeAi~~yekALeL~P~~ 944 (1166)
+|++|+.++++|+++.+.. +.+++.+|.+|..+| ++++|+..|++|+.+....
T Consensus 211 ~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 211 RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999986443 789999999999999 5799999999999986643
|
| >2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-13 Score=130.26 Aligned_cols=69 Identities=49% Similarity=0.657 Sum_probs=62.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||.+.++.++||++|++++++||||+.+.. .+.+++.|++|++||++|+||.+|
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-------------------~~~a~~~f~~I~~AY~vL~d~~~R 62 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-------------------KEFAEKKFKEVAEAYEVLSDKHKR 62 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC-------------------CHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc-------------------HHHHHHHHHHHHHHHHHHCCHHHH
Confidence 3899999999999999999999999999999997631 246889999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||..+.
T Consensus 63 ~~YD~~g~ 70 (99)
T 2lgw_A 63 EIYDRYGR 70 (99)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhCc
Confidence 99999765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-11 Score=142.27 Aligned_cols=241 Identities=12% Similarity=0.026 Sum_probs=179.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhH
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG-EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKA 692 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG-d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~ 692 (1166)
+..++...+..++|+..+.++|.++|++..+|..++.++..++ .+++++..+.++|..+|.+...+....-
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w-------- 131 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL-------- 131 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH--------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH--------
Confidence 4445555667789999999999999999999999999999999 5999999999999999997655433222
Q ss_pred HhHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHH--------HHHHHHHHHHHhcc
Q 039706 693 QKVSECMQRSAQLLQNKTSN-DAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYE--------EVIQLCEQTFHFAE 763 (1166)
Q Consensus 693 ~~~~e~~~~a~~~l~~~~~g-d~eeALe~lekALel~P~~~~al~~lA~~y~~lGdye--------eAi~~lekALel~p 763 (1166)
++... .+ +++++++.++++|+++|.+..+|..++.++..++.++ ++++++.++++.+|
T Consensus 132 ------------lL~~l-~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp 198 (349)
T 3q7a_A 132 ------------LLDRI-SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG 198 (349)
T ss_dssp ------------HHHHH-CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT
T ss_pred ------------HHHHh-cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC
Confidence 22111 13 6789999999999999999999999999999999888 99999999999988
Q ss_pred CCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHh
Q 039706 764 KNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRK 843 (1166)
Q Consensus 764 ~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~ 843 (1166)
.|..+ | ...+.++..++.+.
T Consensus 199 ~N~SA-----------------------W--~~R~~lL~~l~~~~----------------------------------- 218 (349)
T 3q7a_A 199 RNNSA-----------------------W--GWRWYLRVSRPGAE----------------------------------- 218 (349)
T ss_dssp TCHHH-----------------------H--HHHHHHHTTSTTCC-----------------------------------
T ss_pred CCHHH-----------------------H--HHHHHHHHhccccc-----------------------------------
Confidence 76433 2 22333333322200
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhch--------------------hHHHHHHHHH
Q 039706 844 SAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHI--------------------TDAIADCNLA 903 (1166)
Q Consensus 844 ~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~--------------------eeAi~~lekA 903 (1166)
+ ....+++++++++++|.++ |.+..+|+++..++...|+. ..-...|...
T Consensus 219 --~----~~~~~~eELe~~~~aI~~~----P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 219 --T----SSRSLQDELIYILKSIHLI----PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp --C----CHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred --c----chHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 0 0012678999999999988 88999999988888887764 2333333333
Q ss_pred HHhC------CChHHHHHHHHHHHHHhhCHHHHHHHHHHHH-HHhhhhH
Q 039706 904 IALD------GNYLKAISRRATLYEMIRDYDHAASDFHRLI-ALLTKQI 945 (1166)
Q Consensus 904 Leld------P~~~~A~~~LA~ay~~lGdyeeAi~~yekAL-eL~P~~~ 945 (1166)
+... +....++..+|.+|...++.++|+..|+.+. +.+|-..
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~ 337 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRA 337 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHH
Confidence 3322 4678899999999999999999999998876 4444433
|
| >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-13 Score=132.75 Aligned_cols=69 Identities=30% Similarity=0.488 Sum_probs=63.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||.+.++.++||++||+++++|||||++.. ..++++|++|++||++|+||.+
T Consensus 19 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~~ 78 (112)
T 2ctq_A 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN--------------------PKAVETFQKLQKAKEILTNEES 78 (112)
T ss_dssp CCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC--------------------STHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHHHCCHHH
Confidence 46999999999999999999999999999999998621 3688999999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 79 R~~YD~~~~ 87 (112)
T 2ctq_A 79 RARYDHWRR 87 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999999775
|
| >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.4e-14 Score=132.15 Aligned_cols=69 Identities=41% Similarity=0.681 Sum_probs=62.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||++||+++++||||+++.. ..++++|++|++||++|+||.+|
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~~L~d~~~R 62 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--------------------KEAEAKFKEIKEAYEVLTDSQKR 62 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT--------------------CTHHHHHHHHTTTTTSTTCSHHH
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHHHCCHHHH
Confidence 4899999999999999999999999999999998621 35788999999999999999999
Q ss_pred cccchhhhh
Q 039706 1064 SRYDLEEET 1072 (1166)
Q Consensus 1064 ~~YD~~~~~ 1072 (1166)
+.||..+..
T Consensus 63 ~~YD~~~~~ 71 (103)
T 1bq0_A 63 AAYDQYGHA 71 (103)
T ss_dssp HHTTTSTTT
T ss_pred HHHHHHhhh
Confidence 999997753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.3e-12 Score=133.07 Aligned_cols=176 Identities=8% Similarity=-0.098 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHH
Q 039706 715 EIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRC 794 (1166)
Q Consensus 715 eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~ 794 (1166)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++.. ++ ..+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~-------------------------~a~ 53 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DG-------------------------DAL 53 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CH-------------------------HHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH-------------------------HHH
Confidence 3578888888876 688999999999999999999999999998752 11 124
Q ss_pred HHHHHHHHHcC----CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH----cCChHHHHHHHHHHH
Q 039706 795 CLIFKSYFTLG----RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ----AGRHSEAVEHYTAAL 866 (1166)
Q Consensus 795 ~lLA~ay~~lG----d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~----~G~yeEAie~y~kAL 866 (1166)
..+|.+|.. + ++++|+.+|+++... .....+..+|.+|.. .+++++|+.+|++|+
T Consensus 54 ~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 116 (212)
T 3rjv_A 54 ALLAQLKIR-NPQQADYPQARQLAEKAVEA----------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAA 116 (212)
T ss_dssp HHHHHHTTS-STTSCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 668888887 7 999999999997322 235567788999987 899999999999999
Q ss_pred hccccCCc--hhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh-h-----CHHHHHHHH
Q 039706 867 SCTVESHP--FAAICFCNRAAAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEMI-R-----DYDHAASDF 934 (1166)
Q Consensus 867 el~~e~~p--~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l-G-----dyeeAi~~y 934 (1166)
+.. + ..+.+++++|.+|.. .+++++|+.+|++++++ |.++.+++.+|.+|... | ++++|+.+|
T Consensus 117 ~~~----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~ 191 (212)
T 3rjv_A 117 RDS----ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWL 191 (212)
T ss_dssp SST----TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHH
T ss_pred HcC----CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence 876 4 458999999999999 88999999999999999 77788999999999865 3 899999999
Q ss_pred HHHHHHh
Q 039706 935 HRLIALL 941 (1166)
Q Consensus 935 ekALeL~ 941 (1166)
+++++.-
T Consensus 192 ~~A~~~g 198 (212)
T 3rjv_A 192 NVSCLEG 198 (212)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 9999873
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-12 Score=124.08 Aligned_cols=110 Identities=21% Similarity=0.144 Sum_probs=103.3
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
...+.....+..+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+..|++++.++|+++.
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 3455667788889999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+++.+|.+|..+|++++|+..|++++++.|.+.+
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999999997654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-11 Score=115.16 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+|+.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++...|.+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------- 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY-------- 73 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH--------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHH--------
Confidence 357889999999999999999999999999999999999999999999999999999999999887532211
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
..... ....|++++|+..+++++...|....++..+|.++..+|++++|+..+++++...|.
T Consensus 74 ------------~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 74 ------------NLGNA--YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp ------------HHHHH--HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred ------------HHHHH--HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 11111 235799999999999999999999999999999999999999999999999998774
|
| >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-13 Score=129.94 Aligned_cols=70 Identities=39% Similarity=0.609 Sum_probs=63.3
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..++|.+|||.+.++.++||++|++++++||||+++.. +.+.++|++|++||++|+||.+
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~~ 75 (109)
T 2ctw_A 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN--------------------PEAADKFKEINNAHAILTDATK 75 (109)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC--------------------HHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHHHcCHHH
Confidence 46899999999999999999999999999999998621 3688999999999999999999
Q ss_pred hcccchhhhh
Q 039706 1063 RSRYDLEEET 1072 (1166)
Q Consensus 1063 R~~YD~~~~~ 1072 (1166)
|+.||..+..
T Consensus 76 R~~YD~~g~~ 85 (109)
T 2ctw_A 76 RNIYDKYGSL 85 (109)
T ss_dssp HHHHHHTCHH
T ss_pred HHHHHHhccc
Confidence 9999997653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-13 Score=157.65 Aligned_cols=262 Identities=14% Similarity=0.095 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
++.+|+.+|.+++..|++++|+..|.++ .+..+|..++.++..+|++++|+.+++.+++..++ +.....+..++
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y 104 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHH
Confidence 3467899999999999999999999774 45668999999999999999999999999875333 11111222233
Q ss_pred HHhhhHHhHHH--------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 687 DGLQKAQKVSE--------CMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 687 ~~L~k~~~~~e--------~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
..+++...+.. .+...+.. ....|.|++|+.+|.++ ..|..+|.+|.++|+|++|++.++++
T Consensus 105 ~Klg~l~e~e~f~~~pn~~a~~~IGd~--~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 105 AKTNRLAELEEFINGPNNAHIQQVGDR--CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp ----CHHHHTTTTTCC------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHcCCcHHHHHHHHHH--HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 33332222221 12222222 22366777777777655 35666777777777777777777766
Q ss_pred HHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHH
Q 039706 759 FHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRE 838 (1166)
Q Consensus 759 Lel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~ 838 (1166)
. ++ ..|..+..++...|+++.|..+... +...+..
T Consensus 175 ~--~~----------------------------~~Wk~v~~aCv~~~ef~lA~~~~l~---------------L~~~ad~ 209 (449)
T 1b89_A 175 N--ST----------------------------RTWKEVCFACVDGKEFRLAQMCGLH---------------IVVHADE 209 (449)
T ss_dssp T--CH----------------------------HHHHHHHHHHHHTTCHHHHHHTTTT---------------TTTCHHH
T ss_pred C--Cc----------------------------hhHHHHHHHHHHcCcHHHHHHHHHH---------------HHhCHhh
Confidence 1 11 1133455666677777777443322 1122222
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHH--HhhchhHHHHHHHHHHHhCC-----ChH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYK--ALRHITDAIADCNLAIALDG-----NYL 911 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~--~lGq~eeAi~~lekALeldP-----~~~ 911 (1166)
+..+...|.+.|++++|+.+|+++|.++ +....+|..+|.+|. +.++..++++.|...+.+.| ..+
T Consensus 210 ---l~~lv~~Yek~G~~eEai~lLe~aL~le----~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 210 ---LEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHTTST----TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2245677888888888888888888877 667777877777775 55678888888887777777 777
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
..|..+..+|...++|+.|+..+-.
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHh
Confidence 7888888888888888888875543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=117.27 Aligned_cols=132 Identities=24% Similarity=0.299 Sum_probs=118.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..+|.++...|++++|+..+++++...+ .....+..+|.++...|++++|+.+|++++...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP--------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC--------------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----
Confidence 45689999999999999999999744322 234566778999999999999999999999987
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
|....++..+|.++...|++++|+..+++++...|.+..++..+|.+|...|++++|+..|++++.+.|.
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7778899999999999999999999999999999999999999999999999999999999999998775
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.2e-12 Score=131.28 Aligned_cols=130 Identities=12% Similarity=0.044 Sum_probs=118.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
++.+|.+++..|++++|+..|++++. . ....+..+|.++...|++++|+.+|++++.++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--------------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--------------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINRD---- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--------------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--------------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 56789999999999999999998631 1 24577888999999999999999999999998
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH----------------HHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL----------------KAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~----------------~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
|..+.+|+++|.+|..+|++++|+.+|++++++.|.+. .+++.+|.+|..+|++++|+..|+++
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88899999999999999999999999999999877655 99999999999999999999999999
Q ss_pred HHHhhhh
Q 039706 938 IALLTKQ 944 (1166)
Q Consensus 938 LeL~P~~ 944 (1166)
+++.|+.
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9998875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7e-12 Score=127.19 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+++++|.+++.+|+|++|+..|++++.++|.++.+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P---------------- 101 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK---------------- 101 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC----------------
Confidence 3455677777777777777777777777777777777777777777777777777666665555
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
.++.+++.+|.+|..+|++++|+..|++++++.|+
T Consensus 102 ----------------------------------------~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 102 ----------------------------------------NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp ----------------------------------------SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ----------------------------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 45566777777777777777777777777777653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.33 E-value=9.3e-11 Score=130.17 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=136.5
Q ss_pred hcCCCHHHHHHHHHHHHHhCCChHH------HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 709 KTSNDAEIALGVIDEALFISSYSEK------LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 709 ~~~gd~eeALe~lekALel~P~~~~------al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
...+++++|+..+++++...+..+. ++..+|.++...+++++|+.++++++.+.+.....
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-------------- 151 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-------------- 151 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT--------------
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH--------------
Confidence 3489999999999999998776544 34458888888899999999999999976543221
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh-ccchHHHHHHhhhhHHHHHcCChHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL-AGTVRELLCRKSAGNEAFQAGRHSEAVEH 861 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L-~~~~~~a~~l~~lG~~~~~~G~yeEAie~ 861 (1166)
+..+..+..+|.+|..+|++++|+.+|++++. ....+ ......+..+.++|.+|...|+|++|+.+
T Consensus 152 -----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 152 -----YQNLYIENAIANIYAENGYLKKGIDLFEQILK--------QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp -----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11223467799999999999999999999843 11111 23345566889999999999999999999
Q ss_pred HHHHHhcccc--CCchhHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHhC
Q 039706 862 YTAALSCTVE--SHPFAAICFCNRAAAYKALRH-ITDAIADCNLAIALD 907 (1166)
Q Consensus 862 y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq-~eeAi~~lekALeld 907 (1166)
|++|+++.+. .....+.+|+++|.+|..+|+ +++|+.+|++|+.+.
T Consensus 219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999998742 234458899999999999995 699999999999763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-12 Score=160.44 Aligned_cols=189 Identities=14% Similarity=0.046 Sum_probs=164.6
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhccCCCCCccccCcccccCcc
Q 039706 712 NDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK----------YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSS 781 (1166)
Q Consensus 712 gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd----------yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~ 781 (1166)
...++|++.++++|.++|++..+|..++.++..+++ +++|+..++++++.+|++..+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~a------------- 109 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT------------- 109 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH-------------
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHH-------------
Confidence 345688999999999999999999999999999999 999999999999999987432
Q ss_pred chhhhhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC-ChHHH
Q 039706 782 ESTKHVSFRLWRCCLIFKSYFTLG--RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG-RHSEA 858 (1166)
Q Consensus 782 ~~~~~~~~~~wr~~lLA~ay~~lG--d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G-~yeEA 858 (1166)
|...+.++..++ ++++|+..+.+++.. +++...+|..++.++...+ .+++|
T Consensus 110 ------------W~hR~w~l~~l~~~~~~~el~~~~k~l~~--------------d~~N~~aW~~R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 110 ------------WHHRCWLLSRLPEPNWARELELCARFLEA--------------DERNFHCWDYRRFVAAQAAVAPAEE 163 (567)
T ss_dssp ------------HHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------------CTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred ------------HHHHHHHHHHcccccHHHHHHHHHHHHhh--------------ccccccHHHHHHHHHHHcCCChHHH
Confidence 445677778888 779999999998443 3344566777799999999 99999
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHh--------------hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKAL--------------RHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~l--------------Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
+++++++|+.+ |.+..+|++++.++..+ +.+++|++++.+||.++|++..+|+.++.++...
T Consensus 164 l~~~~~~I~~~----p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 164 LAFTDSLITRN----FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp HHHHHTTTTTT----CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHC----CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 99999999988 99999999999999986 7789999999999999999999999999999999
Q ss_pred hCHHH------------HHHHHHHHHHHhhh
Q 039706 925 RDYDH------------AASDFHRLIALLTK 943 (1166)
Q Consensus 925 Gdyee------------Ai~~yekALeL~P~ 943 (1166)
+++++ |+..|.+++.+.|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred CCccceeeeeeccCCceEEEEeccceecccc
Confidence 98777 66667777777765
|
| >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-13 Score=128.25 Aligned_cols=72 Identities=31% Similarity=0.485 Sum_probs=64.6
Q ss_pred ccchhhhcccCCCC-CHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 983 PLDMYLILGVESSV-SVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 983 ~~dyY~iLGl~~~a-s~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
..+||.+|||++.+ +.++|+++||+++++||||+.+. ...++.+++.|++|++||++|+||.
T Consensus 14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~-----------------~~~~~~a~~~f~~i~~AY~~L~d~~ 76 (109)
T 2qsa_A 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN-----------------KEEKLLAEERFRVIATAYETLKDDE 76 (109)
T ss_dssp TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS-----------------HHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------------ccccHHHHHHHHHHHHHHHHHCCHH
Confidence 35999999999999 99999999999999999999752 2335678999999999999999999
Q ss_pred hhcccchhhh
Q 039706 1062 KRSRYDLEEE 1071 (1166)
Q Consensus 1062 kR~~YD~~~~ 1071 (1166)
+|+.||..+.
T Consensus 77 ~R~~YD~~~~ 86 (109)
T 2qsa_A 77 AKTNYDYYLD 86 (109)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999999764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-11 Score=117.02 Aligned_cols=103 Identities=29% Similarity=0.425 Sum_probs=98.5
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
.+..+..+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+.+|++++.++|+++.+++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 46677888999999999999999999999998 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
|.+|..+|++++|+..|++++++.|+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 999999999999999999999999984
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=138.04 Aligned_cols=253 Identities=13% Similarity=0.083 Sum_probs=180.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDF-LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~-~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~ 694 (1166)
.-++-+|+|..+|.... ++.|.. ....+.+.++|+.+|++... ..+. +.
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~-~~----------------- 70 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTS-KL----------------- 70 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSS-TT-----------------
T ss_pred HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCC-HH-----------------
Confidence 45677899999998543 345544 45677888999999998742 1111 10
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCc
Q 039706 695 VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQ 774 (1166)
Q Consensus 695 ~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~ 774 (1166)
..++..+..++ .++ |+..+++.+...+.....+..+|.++...|++++|+..|.+.+...|.. .
T Consensus 71 -~~a~~~la~~~----~~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-~------- 134 (310)
T 3mv2_B 71 -GKVLDLYVQFL----DTK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE-G------- 134 (310)
T ss_dssp -HHHHHHHHHHH----TTT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-T-------
T ss_pred -HHHHHHHHHHh----ccc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-C-------
Confidence 00111122222 122 7888999888766666777899999999999999999999998776521 0
Q ss_pred ccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC-
Q 039706 775 SMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG- 853 (1166)
Q Consensus 775 ~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G- 853 (1166)
.+..+.+++.+|..+|+.+.|.+.+++.....++. + .....+...+..+++.+..|
T Consensus 135 ---------------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~-------~-~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 135 ---------------TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT-------V-SGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH-------H-HHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc-------c-ccchHHHHHHHHHHHHHHhCC
Confidence 01124568899999999999999998853322200 0 00122333343455566666
Q ss_pred -ChHHHHHHHHHHHhccccCCch--hHHHHHHHHHHHHHhhchhHHHHHHHHHHHh----------CCChHHHHHHHHHH
Q 039706 854 -RHSEAVEHYTAALSCTVESHPF--AAICFCNRAAAYKALRHITDAIADCNLAIAL----------DGNYLKAISRRATL 920 (1166)
Q Consensus 854 -~yeEAie~y~kALel~~e~~p~--~a~a~~nlA~ay~~lGq~eeAi~~lekALel----------dP~~~~A~~~LA~a 920 (1166)
++.+|+..|+++.+.. |. ....+++ +++++|++++|...++.++++ +|+++.++.+++.+
T Consensus 192 ~~~q~A~~~f~El~~~~----p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 192 ETATSNFYYYEELSQTF----PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp STTTHHHHHHHHHHTTS----CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC----CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 9999999999987755 44 3445554 899999999999999988877 58899999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 921 YEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 921 y~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
...+|+ +|.++++++.++.|++.-
T Consensus 265 ~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 265 ALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHhCh--HHHHHHHHHHHhCCCChH
Confidence 999998 899999999999998854
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-11 Score=119.27 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc
Q 039706 792 WRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 792 wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e 871 (1166)
..+..+|.+++..|++++|+..|++++...+ .....+..+|.++...|+|++|+.+|++++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-- 77 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP--------------SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-- 77 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3457799999999999999999999754332 235667788999999999999999999999988
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH--HHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR--RATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~--LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
|.+..+|+++|.++..+|++++|+..|++++.++|.+..++.. ++..+...|++++|+..++++..+.+.
T Consensus 78 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 78 --KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 7888999999999999999999999999999999999988855 455588899999999999998877654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-10 Score=127.77 Aligned_cols=172 Identities=13% Similarity=0.063 Sum_probs=134.3
Q ss_pred hcCCCHHHHHHHHHHHHHhCCChH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 709 KTSNDAEIALGVIDEALFISSYSE------KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 709 ~~~gd~eeALe~lekALel~P~~~------~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
...++|++|+..+.+++...+... .+++.+|.++...|++++|+..+++++.+.+.....
T Consensus 86 ~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------- 151 (293)
T 2qfc_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-------------- 151 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT--------------
T ss_pred HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch--------------
Confidence 358999999999999999887543 446678899999999999999999999887653221
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch-HHHHHHhhhhHHHHHcCChHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV-RELLCRKSAGNEAFQAGRHSEAVEH 861 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~-~~a~~l~~lG~~~~~~G~yeEAie~ 861 (1166)
+..+..+..+|.+|..+|++++|+.+|++++.. ........ ..+..+.++|.+|...|+|++|+.+
T Consensus 152 -----~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~--------~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~ 218 (293)
T 2qfc_A 152 -----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQ--------LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp -----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence 112234577999999999999999999997521 01111111 1236788999999999999999999
Q ss_pred HHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhHH-HHHHHHHHHhC
Q 039706 862 YTAALSCTVE--SHPFAAICFCNRAAAYKALRHITDA-IADCNLAIALD 907 (1166)
Q Consensus 862 y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~eeA-i~~lekALeld 907 (1166)
|++++.+... .....+.+|+++|.+|..+|++++| ..+|++|+.+.
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999987631 2233588999999999999999999 78899998753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.5e-12 Score=126.67 Aligned_cols=120 Identities=17% Similarity=0.044 Sum_probs=98.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHH
Q 039706 719 GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIF 798 (1166)
Q Consensus 719 e~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA 798 (1166)
..|++++.++|.+..+++.+|.+++..|+|++|+..|++++.++|.+.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------- 55 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS-------------------------------- 55 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--------------------------------
Confidence 456778888888888888888888888888888888888888877542
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH
Q 039706 799 KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 799 ~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
..+..+|.++...|+|++|+.+|++++.++ |.++.
T Consensus 56 -----------------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~ 90 (148)
T 2vgx_A 56 -----------------------------------------RFFLGLGACRQAMGQYDLAIHSYSYGAVMD----IXEPR 90 (148)
T ss_dssp -----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTH
T ss_pred -----------------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCch
Confidence 123345777788888888888888898888 88888
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
+|+++|.+|..+|++++|+..|+++++++|+++....
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 9999999999999999999999999999888765543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-10 Score=115.62 Aligned_cols=135 Identities=11% Similarity=0.000 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
...|+.+|.+++..|++++|+..|++++.++|.+..+++.+|.++..+|++++|+.+|++++.++|.+...+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 85 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY------- 85 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH-------
Confidence 3567889999999999999999999999999999999999999999999999999999999999998543221
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHH--HHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMK--AEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~l--A~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
..+.+ +...|++++|+.+|++++.+.|.+..++..+ +..+..+|++++|+..+.++..+.+.
T Consensus 86 -------------~~a~~--~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 86 -------------RRAAS--NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp -------------HHHHH--HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHH--HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 11112 2347999999999999999999998888554 44588899999999999998876544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=119.47 Aligned_cols=101 Identities=13% Similarity=-0.003 Sum_probs=91.7
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
.+..+|..++..|++++|+..|++++.++ |.++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35667999999999999999999999998 88999999999999999999999999999999999999999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 921 YEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 921 y~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
|..+|++++|+..|++++++.|...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999988763
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.6e-12 Score=126.69 Aligned_cols=128 Identities=20% Similarity=0.163 Sum_probs=110.8
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHH
Q 039706 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICF 880 (1166)
Q Consensus 801 y~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~ 880 (1166)
+...|++++|+..+++++...+ .....+..+|.+++..|++++|+.+|++++.++ |.+..++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~ 81 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP--------------QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----GENAELY 81 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC--------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CSCHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCC--------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHH
Confidence 4567899999999999744333 335677888999999999999999999999998 7788999
Q ss_pred HHHHHH-HHHhhch--hHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 881 CNRAAA-YKALRHI--TDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 881 ~nlA~a-y~~lGq~--eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.++|.+ +...|++ ++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++++.|.+..
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 999999 8899999 99999999999999999999999999999999999999999999999888643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-11 Score=134.44 Aligned_cols=133 Identities=17% Similarity=0.120 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---------------LRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---------------~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
...+|+++|.+|+.+|+|++|+..|++|+.++|.+ ..+|+++|.+|+.+|++++|+.+|++++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556779999999999999999999999999999 699999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHH
Q 039706 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEV 751 (1166)
Q Consensus 672 ~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeA 751 (1166)
+|++...+.. .+.+ +...|++++|+..|+++++++|.+..++..++.++..++++++|
T Consensus 226 ~p~~~~a~~~--------------------lg~~--~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSNNEKGLSR--------------------RGEA--HLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTTCHHHHHH--------------------HHHH--HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHH--------------------HHHH--HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9986433221 1222 23479999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHh
Q 039706 752 -IQLCEQTFHF 761 (1166)
Q Consensus 752 -i~~lekALel 761 (1166)
...|.+++..
T Consensus 284 ~~~~~~~~~~~ 294 (336)
T 1p5q_A 284 EKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 5577777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=121.83 Aligned_cols=129 Identities=12% Similarity=0.010 Sum_probs=98.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHH
Q 039706 719 GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIF 798 (1166)
Q Consensus 719 e~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA 798 (1166)
..|++++.++|.+...++.+|.+++..|+|++|+..|++++.++|.+.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------- 52 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA-------------------------------- 52 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--------------------------------
Confidence 356677778888888888888888888888888888888888777542
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH
Q 039706 799 KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 799 ~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
..+..+|.++...|+|++|+.+|++++.++ |.++.
T Consensus 53 -----------------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~ 87 (142)
T 2xcb_A 53 -----------------------------------------RYFLGLGACRQSLGLYEQALQSYSYGALMD----INEPR 87 (142)
T ss_dssp -----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTH
T ss_pred -----------------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcH
Confidence 123345777788888888888888888888 78888
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
+|+++|.+|..+|++++|+..|+++++++|+++.....+..+...+
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999888776655544444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.8e-12 Score=149.49 Aligned_cols=166 Identities=12% Similarity=0.039 Sum_probs=135.8
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
.+++++|+..|+.++...|.....+..+|.+|+.+|+|++|+..|++++.+.|.+... .
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~----------~----------- 305 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL----------S----------- 305 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC----------C-----------
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC----------C-----------
Confidence 4667778888888888889999999999999999999999999999999999876431 0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
.+.... .....+..+.++|.+|+++++|++|+.+|++||.++
T Consensus 306 ----------------~~~~~~---------------------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 306 ----------------EKESKA---------------------SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp ----------------HHHHHH---------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred ----------------hHHHHH---------------------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 000000 011234567788999999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH-HHHHH
Q 039706 871 ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD-FHRLI 938 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~-yekAL 938 (1166)
|.+..+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..++++++|... |++++
T Consensus 348 ---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 ---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999988754 44433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=127.89 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=106.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc-h--
Q 039706 799 KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP-F-- 875 (1166)
Q Consensus 799 ~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p-~-- 875 (1166)
.....+|++++|.+.+... .......+..+..+|..++..|+|++|+.+|++++.+.+.... .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 77 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYT--------------DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77 (198)
T ss_dssp ----------CCCSGGGCC--------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH
T ss_pred hhhhhhhhccccCchhhCC--------------HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh
Confidence 3445566777666665432 2334556778889999999999999999999999998732210 0
Q ss_pred ---------hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 876 ---------AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 876 ---------~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
...+|+++|.+|..+|++++|+.+|++++.++|.+..+++.+|.+|..+|++++|+..|++++++.|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 13899999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred hh
Q 039706 947 KS 948 (1166)
Q Consensus 947 ~~ 948 (1166)
..
T Consensus 158 ~~ 159 (198)
T 2fbn_A 158 IR 159 (198)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-11 Score=121.75 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPD-------FLR-----VQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~-------~~~-----A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
....+.++|..++.+|+|++|+..|++||+++|+ +.. +|.++|.++..+|+|++|+.+|.++|+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~---- 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH---- 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 3455788999999999999999999999999999 544 999999999999999999999988764
Q ss_pred chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHH----HHHHHHHHHccCHHH
Q 039706 675 VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLL----EMKAEALFMLRKYEE 750 (1166)
Q Consensus 675 n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al----~~lA~~y~~lGdyee 750 (1166)
.|+++++++|++..+| +++|.+|..+|++++
T Consensus 86 ---------------------------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eE 120 (159)
T 2hr2_A 86 ---------------------------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAE 120 (159)
T ss_dssp ---------------------------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHH
Confidence 2566677889998999 999999999999999
Q ss_pred HHHHHHHHHHhccCCCCC
Q 039706 751 VIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 751 Ai~~lekALel~p~n~~a 768 (1166)
|+..|++++++.|.+...
T Consensus 121 Al~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 121 AMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHhcCCCcHHH
Confidence 999999999999987654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-12 Score=149.26 Aligned_cols=260 Identities=12% Similarity=0.051 Sum_probs=96.2
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS 696 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~ 696 (1166)
.....|++++|++.++++ +.+.+|..+|.+++..|++++|++.|.++- +|. .......+..
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~--D~~---~y~~V~~~ae--------- 72 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--DPS---SYMEVVQAAN--------- 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCC--CHH---HHHHHHHHHH---------
Confidence 344678899999999998 334699999999999999999999998752 222 1111111111
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccc
Q 039706 697 ECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSM 776 (1166)
Q Consensus 697 e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l 776 (1166)
..|++++|+.+++.+++..+. +.+...++.+|.++|++.++.+.++. |+ ..+|...|..+
T Consensus 73 -------------~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~ 132 (449)
T 1b89_A 73 -------------TSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRC 132 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTTC-----C-------------
T ss_pred -------------hCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHH
Confidence 245566666655555553222 44455555556666666655544431 21 11222222211
Q ss_pred ccCcc-chhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 777 ELDSS-ESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 777 ~ld~~-~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
.-.+. .-+...|..+..|..+|.++..+|++++|++.++++ .....|+..+.++...|+|
T Consensus 133 ~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA-------------------~~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-------------------NSTRTWKEVCFACVDGKEF 193 (449)
T ss_dssp ----CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH-------------------TCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc-------------------CCchhHHHHHHHHHHcCcH
Confidence 11000 011111111222456778888888888888888775 1245566667788888888
Q ss_pred HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH--HhhCHHHHHHH
Q 039706 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE--MIRDYDHAASD 933 (1166)
Q Consensus 856 eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~--~lGdyeeAi~~ 933 (1166)
+.|..+... |.+. |.. ...+..+|.+.|++++|+.+++++|.+++.+..++..+|.+|. +.++..++++.
T Consensus 194 ~lA~~~~l~-L~~~----ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~ 265 (449)
T 1b89_A 194 RLAQMCGLH-IVVH----ADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 265 (449)
T ss_dssp HHHHHTTTT-TTTC----HHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhC----Hhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888666654 2233 333 3346677888888888888888888888888888888888776 45677777777
Q ss_pred HHHHHHHhh
Q 039706 934 FHRLIALLT 942 (1166)
Q Consensus 934 yekALeL~P 942 (1166)
|...+.+.|
T Consensus 266 ~~~~ini~k 274 (449)
T 1b89_A 266 FWSRVNIPK 274 (449)
T ss_dssp HSTTSCHHH
T ss_pred HHHHhcCcH
Confidence 777776665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-11 Score=138.16 Aligned_cols=220 Identities=8% Similarity=-0.002 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFL-----------------RVQVRAANCHLALGEIEDASKYFRMCLQSG 672 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~-----------------~A~~~LA~lyl~lGd~eeAl~~fekALel~ 672 (1166)
+....|..+...|+|++|+..|.++++..|... .++..+|.+|..+|++++|..+|.+++.+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999887642 468888999999999999999888877643
Q ss_pred CCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHH
Q 039706 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVI 752 (1166)
Q Consensus 673 P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi 752 (1166)
+.... .. ....++..++.++...|++++|+
T Consensus 86 ~~~~~--------------~~------------------------------------~~~~~~~~l~~~~~~~~~~~~a~ 115 (434)
T 4b4t_Q 86 MQFAK--------------SK------------------------------------TVKVLKTLIEKFEQVPDSLDDQI 115 (434)
T ss_dssp HTSCH--------------HH------------------------------------HHHHHHHHHHHHCSCCSCHHHHH
T ss_pred HHccc--------------hH------------------------------------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 22100 00 00123344566666778888888
Q ss_pred HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 753 QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 753 ~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
.++++++.+.+..... +.+...+..+|.+|...|++++|+..+++++. .+...
T Consensus 116 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--------~~~~~ 168 (434)
T 4b4t_Q 116 FVCEKSIEFAKREKRV-------------------FLKHSLSIKLATLHYQKKQYKDSLALINDLLR--------EFKKL 168 (434)
T ss_dssp HHHHHHHHHHHHSSCC-------------------SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HHTTS
T ss_pred HHHHHHHHHHHHhCcc-------------------HHHHHHHHHHHHHHHHccChHHHHHHHHHHHH--------HHHhc
Confidence 8888888776543221 11122345688888889999999888888632 22223
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-C--chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES-H--PFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~-~--p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
......+..+..+|.+|...|+|.+|..+|++++.+.+.. . ...+.++..+|..+...++|.+|..+|.+++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445567788888999999999999999999998875321 1 234677888899999999999999999999875
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.3e-11 Score=121.03 Aligned_cols=171 Identities=12% Similarity=0.054 Sum_probs=130.1
Q ss_pred HHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 039706 742 LFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGN 821 (1166)
Q Consensus 742 y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~ 821 (1166)
++..|++++|+..++.+.. +|. ...+.+..+|.+|...|++++|+.++++++.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-- 54 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPA------------------------TASGARFMLGYVYAFMDRFDEARASFQALQQ-- 54 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STT------------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred ccccccHHHHHHHHHHhcC-ChH------------------------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--
Confidence 4567899999885544422 221 1123356799999999999999999999733
Q ss_pred CCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC--c-hhHHHHHHHHHHHHHhhchhHHHH
Q 039706 822 GGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH--P-FAAICFCNRAAAYKALRHITDAIA 898 (1166)
Q Consensus 822 ~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~--p-~~a~a~~nlA~ay~~lGq~eeAi~ 898 (1166)
.+.........+..+..+|.++...|++++|+.+|++++.+..... + ....+++++|.++..+|++++|+.
T Consensus 55 ------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (203)
T 3gw4_A 55 ------QAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ 128 (203)
T ss_dssp ------HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ------HHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 2222334456677888999999999999999999999999843211 2 567889999999999999999999
Q ss_pred HHHHHHHhCCC------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 899 DCNLAIALDGN------YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 899 ~lekALeldP~------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
++++++.+.+. ...++..+|.+|..+|++++|+..|++++++.....
T Consensus 129 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 129 EYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 99999987421 244678999999999999999999999999876543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-11 Score=122.28 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
...++++|.+++..|+|++|+..|++++ +| +..+++.+|.+|..+|++++|+.+|++++.++|.+...+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------- 75 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF------- 75 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH-------
Confidence 3457899999999999999999999995 44 7899999999999999999999999999999998543221
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH----------------HHHHHHHHHHHHccCHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE----------------KLLEMKAEALFMLRKYEEV 751 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~----------------~al~~lA~~y~~lGdyeeA 751 (1166)
..+.+ +...|++++|+..|++++++.|.+. .++..+|.+|..+|++++|
T Consensus 76 -------------~lg~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 76 -------------QRGML--YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp -------------HHHHH--HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------HHHHH--HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 11222 2347999999999999999877655 9999999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 039706 752 IQLCEQTFHFAEKN 765 (1166)
Q Consensus 752 i~~lekALel~p~n 765 (1166)
+..+++++.+.|..
T Consensus 141 ~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 141 EEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcCccc
Confidence 99999999998854
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-10 Score=135.02 Aligned_cols=208 Identities=12% Similarity=-0.001 Sum_probs=165.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcccc
Q 039706 710 TSNDAEIALGVIDEALFISSYS-----------------EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDAN 772 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~-----------------~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~ 772 (1166)
..|+|++|+..|.+++...|.. ..++..+|.+|..+|+|++|++++.+++.+.+....+
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~---- 91 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS---- 91 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH----
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch----
Confidence 4799999999999999987753 2468899999999999999999999999887653221
Q ss_pred CcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc
Q 039706 773 GQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA 852 (1166)
Q Consensus 773 g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~ 852 (1166)
.........++.++...|++++|+.++++++. ...........+..+..+|.++...
T Consensus 92 ---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 92 ---------------KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE--------FAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp ---------------HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH--------HHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------HHHHhCccHHHHHHHHHHHHHHHHc
Confidence 00111234577888889999999999998633 1222223334566778889999999
Q ss_pred CChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHH
Q 039706 853 GRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN-------YLKAISRRATLYEM 923 (1166)
Q Consensus 853 G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~-------~~~A~~~LA~ay~~ 923 (1166)
|+|.+|+.++++++.... ...+....++.+++.+|..+|++++|...+++++.+.+. ....+..+|.++..
T Consensus 149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE 228 (434)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 999999999999987642 345677889999999999999999999999999987422 24567788999999
Q ss_pred hhCHHHHHHHHHHHHHHhhhh
Q 039706 924 IRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 924 lGdyeeAi~~yekALeL~P~~ 944 (1166)
.++|.+|..+|.++++..+..
T Consensus 229 ~~~y~~A~~~~~~a~~~~~~~ 249 (434)
T 4b4t_Q 229 DKDYKTAFSYFFESFESYHNL 249 (434)
T ss_dssp SSCHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHhhhh
Confidence 999999999999999886654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=110.98 Aligned_cols=116 Identities=11% Similarity=-0.008 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
+..|+++|..++..|+|++|+..|+++++++|++..+|+.+|.+|..+|++++|+.+|+++++++|++...+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----- 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK----- 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH-----
Confidence 456788999999999999999999999999999999999999999999999999999999999999864332211
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC------CChHHHHHHHHHHHHHc
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS------SYSEKLLEMKAEALFML 745 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~------P~~~~al~~lA~~y~~l 745 (1166)
+.+ +...|++++|+..|+++++++ |.+..++..++.+...+
T Consensus 79 ---------------g~~--~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 79 ---------------ATA--QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp ---------------HHH--HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred ---------------HHH--HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 111 224799999999999999999 88988888888876553
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.24 E-value=8e-11 Score=114.86 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.++.++|.+++..|+|++|+..|++||+++|+++.+|..+|.+|..+|++++|+.+|+++++++|++...+..+..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~-- 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM-- 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH--
Confidence 457889999999999999999999999999999999999999999999999999999999999887654443333322
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS 731 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~ 731 (1166)
...+.++ ...+++++|+.+|+++|...|+.
T Consensus 87 -----------~~lg~~~--~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 87 -----------SRAGNAF--QKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp -----------HHHHHHH--HHTTCHHHHHHHHHHHHHHSCCH
T ss_pred -----------HHHHHHH--HHcCCHHHHHHHHHHHHhhCcCH
Confidence 2222222 34899999999999999998863
|
| >2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-12 Score=117.80 Aligned_cols=61 Identities=31% Similarity=0.456 Sum_probs=56.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||.+.++.++||++||+++++|||||++. ..++++|++|++||++|+||.+|
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~L~d~~~R 85 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA---------------------PGSEDAFKAVVNARTALLKNIKS 85 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC---------------------TTHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHHCCcccc
Confidence 599999999999999999999999999999999852 35778899999999999999988
Q ss_pred cc
Q 039706 1064 SR 1065 (1166)
Q Consensus 1064 ~~ 1065 (1166)
+.
T Consensus 86 ~~ 87 (90)
T 2ys8_A 86 GP 87 (90)
T ss_dssp SC
T ss_pred cC
Confidence 75
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-10 Score=116.01 Aligned_cols=172 Identities=12% Similarity=0.021 Sum_probs=132.1
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
..|++++|+..++.+....+....++..+|.++..+|++++|+.++++++.+....... ..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~ 64 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH-------------------TA 64 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH-------------------HH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc-------------------HH
Confidence 36899999996655544333678899999999999999999999999999986643211 11
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch-HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhc
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV-RELLCRKSAGNEAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~-~~a~~l~~lG~~~~~~G~yeEAie~y~kALel 868 (1166)
....+..+|.+|...|++++|+.++++++.. ........ ..+..+..+|.++...|++++|+.+|++++.+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEEREL--------LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2344677999999999999999999997431 11122122 45677888999999999999999999999987
Q ss_pred ccc--CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC
Q 039706 869 TVE--SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 869 ~~e--~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP 908 (1166)
... .....+.++.++|.++..+|++++|+..+++++++..
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 532 2223456789999999999999999999999998753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.23 E-value=8.7e-12 Score=148.57 Aligned_cols=114 Identities=24% Similarity=0.378 Sum_probs=99.0
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-----------CchhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES-----------HPFAAICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~-----------~p~~a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
.+..+..++.+|+.++..|+|++|+.+|++||.+++.. .+....+|+++|.||.++|+|++|+.+|++|
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45567788899999999999999999999999988322 1122789999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 904 IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 904 LeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|+++|+++.+|+++|.+|..+|+|++|+.+|++++++.|.+...+
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~ 388 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHH
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999999999999876544
|
| >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-12 Score=131.74 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=63.8
Q ss_pred chhhhcccCCCC--CHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 985 DMYLILGVESSV--SVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 985 dyY~iLGl~~~a--s~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
+||.+|||++.+ +..+|+++||+++++|||||++.. +...+..|...|+.|++||+||+||.+
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~---------------~~~e~~~a~~~f~~In~AY~vL~dp~~ 66 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASG---------------SQAEQLAAVQQSATINQAWQTLRHPLM 66 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTS---------------CHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCC---------------CHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 799999999999 999999999999999999998631 234456788999999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|..||..+.
T Consensus 67 R~~Yd~~l~ 75 (171)
T 1fpo_A 67 RAEYLLSLH 75 (171)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999998653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-10 Score=111.76 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
.+.+..+|.+|+..|++++|+.++++++.. ..........+..+..+|.++...|++++|+.+|++++.+.+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLI--------AKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------HHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344677999999999999999999997431 111222334456788899999999999999999999998763
Q ss_pred c--CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 871 E--SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG------NYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 871 e--~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP------~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
. ..+....++.++|.++..+|++++|+.++++++.+.+ ....++..+|.+|..+|++++|+..+++++++..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 2 2233477899999999999999999999999998742 3367889999999999999999999999998865
Q ss_pred h
Q 039706 943 K 943 (1166)
Q Consensus 943 ~ 943 (1166)
+
T Consensus 161 ~ 161 (164)
T 3ro3_A 161 E 161 (164)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-10 Score=119.95 Aligned_cols=174 Identities=11% Similarity=-0.031 Sum_probs=140.1
Q ss_pred hHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHH
Q 039706 595 ASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG----EIEDASKYFRMCLQ 670 (1166)
Q Consensus 595 A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG----d~eeAl~~fekALe 670 (1166)
+...+..|.+.-.+.+++++|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+++++
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 4456777778888899999999999999999999999999875 689999999999998 7 99999999999976
Q ss_pred cCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHH--
Q 039706 671 SGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQ--NKTSNDAEIALGVIDEALFISS--YSEKLLEMKAEALFM-- 744 (1166)
Q Consensus 671 l~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~--~~~~gd~eeALe~lekALel~P--~~~~al~~lA~~y~~-- 744 (1166)
.. +... +..+..++. ....+++++|+.+|+++++..+ ..+.+++.+|.+|..
T Consensus 82 ~g--~~~a--------------------~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~ 139 (212)
T 3rjv_A 82 AG--SKSG--------------------EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGV 139 (212)
T ss_dssp TT--CHHH--------------------HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTS
T ss_pred CC--CHHH--------------------HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCC
Confidence 43 2221 122222221 1126899999999999999988 458999999999999
Q ss_pred --ccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHc-C-----CHHHHHHHHHH
Q 039706 745 --LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL-G-----RLEEAIAALER 816 (1166)
Q Consensus 745 --lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~l-G-----d~eeAl~~lek 816 (1166)
.+++++|+.+|++++++ +.+.. .+..||.+|... | ++++|+.+|++
T Consensus 140 g~~~d~~~A~~~~~~A~~~-~~~~~-------------------------a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 140 HGPEDDVKASEYFKGSSSL-SRTGY-------------------------AEYWAGMMFQQGEKGFIEPNKQKALHWLNV 193 (212)
T ss_dssp SSSCCHHHHHHHHHHHHHT-SCTTH-------------------------HHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-CCCHH-------------------------HHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence 89999999999999987 33221 146688888764 3 89999999999
Q ss_pred Hhc
Q 039706 817 HES 819 (1166)
Q Consensus 817 Al~ 819 (1166)
+..
T Consensus 194 A~~ 196 (212)
T 3rjv_A 194 SCL 196 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.6e-10 Score=128.10 Aligned_cols=160 Identities=9% Similarity=-0.057 Sum_probs=131.1
Q ss_pred hHHHHHHHHHhchH--HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHH
Q 039706 595 ASAETIAAQEACEK--WRLSNRAATRMALG-RMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL-G-EIEDASKYFRMCL 669 (1166)
Q Consensus 595 A~a~~~aAIe~~e~--~ay~nrA~ayl~lG-~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l-G-d~eeAl~~fekAL 669 (1166)
+...+..+|...|. .+|+.|+.++..++ .+++|+..+.++|..+|++..+|..++.++..+ + ++++++..+.+++
T Consensus 73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 55555666665554 56788999999999 599999999999999999999999999999998 8 9999999999999
Q ss_pred HcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC--
Q 039706 670 QSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK-- 747 (1166)
Q Consensus 670 el~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd-- 747 (1166)
+.+|.+..++....-+...+...... ....+.+++++++++++.+|.+..+|..++.++..+++
T Consensus 153 ~~dpkNy~AW~~R~wvl~~l~~~~~~--------------~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 153 LPDPKNYHTWAYLHWLYSHFSTLGRI--------------SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC
T ss_pred HhCCCCHHHHHHHHHHHHHhcccccc--------------chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 99999877665443333333221100 01224689999999999999999999999999999987
Q ss_pred -----HHHHHHHHHHHHHhccCCCCC
Q 039706 748 -----YEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 748 -----yeeAi~~lekALel~p~n~~a 768 (1166)
++++++++.+++.++|.+..+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P~n~Sa 244 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIPHNVSA 244 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 799999999999999987554
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-12 Score=134.65 Aligned_cols=68 Identities=37% Similarity=0.599 Sum_probs=62.3
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||+++++.++||++||+++++|||||++.. ..+.++|+.|++||++|+||.+|
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~--------------------~~~~~~f~~i~~Ay~~L~~~~~r 61 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--------------------PNAHGDFLKINRAYEVLKDEDLR 61 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC--------------------TTHHHHHHHHHHHHHHHTSHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------hHHHHHHHHHHHHHHHhCCHHHH
Confidence 3899999999999999999999999999999998531 36889999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||..+.
T Consensus 62 ~~yd~~~~ 69 (210)
T 3apq_A 62 KKYDKYGE 69 (210)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 99999765
|
| >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-12 Score=125.41 Aligned_cols=63 Identities=27% Similarity=0.366 Sum_probs=57.4
Q ss_pred cchhhhcccCCCCCH--HHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESSVSV--ADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~--~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.++|.+|||.+.++. .+||++||++++++||||.+. +++|++|++||+||+||.
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~------------------------~e~f~~I~~AYevL~d~~ 63 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------------------------EEKMKKMNTLYKKMEDGV 63 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------------------------TTTTHHHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc------------------------HHHHHHHHHHHHHHCCHH
Confidence 489999999999998 999999999999999999751 257999999999999999
Q ss_pred hhcccchhh
Q 039706 1062 KRSRYDLEE 1070 (1166)
Q Consensus 1062 kR~~YD~~~ 1070 (1166)
+|++||.++
T Consensus 64 ~R~~~~~~~ 72 (114)
T 1gh6_A 64 KYAHQPDFG 72 (114)
T ss_dssp HSCCSSCCS
T ss_pred HHHHhhhcc
Confidence 999999754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=129.33 Aligned_cols=167 Identities=11% Similarity=0.036 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
.++++.|.+.++......+.....+..+|.+++..|+|++|+..|++++.+.|.++...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------------------- 75 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------------- 75 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC---------------------
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc---------------------
Confidence 45566666666555555555666777777777777777777777777777766543210
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
.+ .+..... .-....+.++|.+++..|+|++|+.+|++++.++
T Consensus 76 ------~~-----------~~~~~~~-------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 76 ------DQ-----------ILLDKKK-------------------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp ------CH-----------HHHHHHH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred ------hh-----------hHHHHHH-------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 00 0000000 0124567788999999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHH-HHHHHHH
Q 039706 871 ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAA-SDFHRLI 938 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi-~~yekAL 938 (1166)
|.+..+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..++++.++. ..|.+++
T Consensus 119 ---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 ---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred ---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999999999999999999988887 4455544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.1e-11 Score=120.72 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=108.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS 696 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~ 696 (1166)
.+...|++++|+..|++++..+|.+..+|+.+|.+|...|++++|+.+|+++++++|.+...+..
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------------- 83 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA--------------- 83 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHH---------------
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH---------------
Confidence 35677899999999999999999999999999999999999999999999999999986432211
Q ss_pred HHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 697 ECMQRSAQLLQNKTSNDA--EIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 697 e~~~~a~~~l~~~~~gd~--eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.+.++ +...+++ ++|+.+|++++.++|.+..++..+|.+|..+|++++|+..|++++.+.|.+..
T Consensus 84 -----la~~l-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 84 -----LATVL-YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp -----HHHHH-HHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred -----HHHHH-HHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 11110 1236888 99999999999999999999999999999999999999999999999997643
|
| >3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.5e-12 Score=133.78 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=63.5
Q ss_pred ccchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCC
Q 039706 983 PLDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDP 1060 (1166)
Q Consensus 983 ~~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~ 1060 (1166)
..+||.+|||++. ++..+|+++||+++++|||||++.. .+..+..|.++|++|++||+||+||
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~---------------~~~e~~~a~~~f~~In~AY~vLsdp 106 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQR---------------SQTEKDFSEKHSTLVNDAYKTLLAP 106 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTS---------------CHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---------------CHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 3689999999986 7899999999999999999998631 2344567889999999999999999
Q ss_pred chhcccchhh
Q 039706 1061 SKRSRYDLEE 1070 (1166)
Q Consensus 1061 ~kR~~YD~~~ 1070 (1166)
.+|+.||..+
T Consensus 107 ~~R~~Yd~~l 116 (207)
T 3bvo_A 107 LSRGLYLLKL 116 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999854
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-10 Score=106.11 Aligned_cols=120 Identities=17% Similarity=0.074 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
....++.+|.+++..|++++|+..|++++.++|.+..++..+|.++..+|++++|+.+|++++.+.|.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG------ 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH------
Confidence 44667889999999999999999999999999999999999999999999999999999999999998533221
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCH
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKY 748 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdy 748 (1166)
..+.+ +...|++++|+.+|++++.+.|.+..++..++.++..+|++
T Consensus 85 --------------~~~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 --------------RMGLA--LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp --------------HHHHH--HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred --------------HHHHH--HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 11111 23479999999999999999999999999999999998875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=111.10 Aligned_cols=109 Identities=32% Similarity=0.504 Sum_probs=101.9
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
.+.....+..+|..++..|+|++|+.+|++++.+. |.+..+++++|.+|..+|++++|+.+|++++.++|.+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 87 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY 87 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHH
Confidence 44567788889999999999999999999999987 77899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
+.+|.+|..+|++++|+..|++++++.|.+...
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 120 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHH
Confidence 999999999999999999999999998887554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-11 Score=147.01 Aligned_cols=208 Identities=10% Similarity=0.024 Sum_probs=153.8
Q ss_pred HHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 617 TRMALGRM-RDALSDCMLAVAIDPDFLRVQVRAANCHLALGE----------IEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 617 ayl~lG~y-~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd----------~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
.+...|.+ ++|+..+.++|.++|++..+|..++.++..+++ +++|+..+.++++.+|.+..+|...
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR--- 113 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR--- 113 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH---
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH---
Confidence 34555655 677999999999999999999999999999988 8888888888888888865443221
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhc
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSN--DAEIALGVIDEALFISSYSEKLLEMKAEALFMLR-KYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~g--d~eeALe~lekALel~P~~~~al~~lA~~y~~lG-dyeeAi~~lekALel~ 762 (1166)
.-++. ..+ +|++|++.++++++++|.+..+|..++.++..++ .++++++++.++++.+
T Consensus 114 -----------------~w~l~--~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 114 -----------------CWLLS--RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp -----------------HHHHH--TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred -----------------HHHHH--HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 11222 234 6788888888888888888888888888888888 8888888888888887
Q ss_pred cCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHH
Q 039706 763 EKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCR 842 (1166)
Q Consensus 763 p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l 842 (1166)
|.+..+ |..++.++..+....+| ...
T Consensus 175 p~n~sa-------------------------W~~r~~ll~~l~~~~~~-----------~~~------------------ 200 (567)
T 1dce_A 175 FSNYSS-------------------------WHYRSCLLPQLHPQPDS-----------GPQ------------------ 200 (567)
T ss_dssp CCCHHH-------------------------HHHHHHHHHHHSCCCCS-----------SSC------------------
T ss_pred CCCccH-------------------------HHHHHHHHHhhcccccc-----------ccc------------------
Confidence 766433 23344444433221000 000
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH------------HHHHHHHHHHhCCC
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD------------AIADCNLAIALDGN 909 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee------------Ai~~lekALeldP~ 909 (1166)
+ ....+.+++|++++.+||.++ |.+..+|++++.++...+++++ |+..|++++.++|.
T Consensus 201 ---~--~~~~~~~~eel~~~~~ai~~~----P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 201 ---G--RLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp ---C--SSCHHHHHHHHHHHHHHHHHC----SSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred ---c--cccHHHHHHHHHHHHHHHhhC----CCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 0 001245899999999999998 8899999999999999998777 77778888888875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-10 Score=107.01 Aligned_cols=106 Identities=22% Similarity=0.346 Sum_probs=99.1
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
+..+..+|..++..|++++|+.+|++++... |.+..++.++|.++..+|++++|+..+++++.++|.++.++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4567778999999999999999999999988 778899999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+|..+|++++|+..|++++++.|.+...+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999988775543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-10 Score=107.38 Aligned_cols=116 Identities=15% Similarity=0.061 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..+|.+++..|++++|+..+++++...+ .....+..+|.++...|++++|+.+|.+++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---- 76 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNP--------------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---- 76 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC--------------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC----
Confidence 44566667777777777777766533222 223445556666777777777777777777665
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
|.+..+++.+|.++..+|++++|+..+++++.++|.+..++..+|.++..+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 555666677777777777777777777777777776667777777777666654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-10 Score=109.24 Aligned_cols=117 Identities=14% Similarity=0.057 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc
Q 039706 792 WRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 792 wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e 871 (1166)
..+..+|.+++..|++++|+..|++++...+. ....+..+|.++...|++++|+.+|++++.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 80 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--------------DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-- 80 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence 34577999999999999999999998554432 35667888999999999999999999999988
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
|.+..+++++|.+|..+|++++|+..|++++.++|.+..++..++.++..+|+
T Consensus 81 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 --PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred --CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999999999999999999999998764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=8.6e-11 Score=130.53 Aligned_cols=170 Identities=15% Similarity=0.058 Sum_probs=123.7
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHH
Q 039706 729 SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLE 808 (1166)
Q Consensus 729 P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~e 808 (1166)
|..+..+..+|.+++..|+|++|+..|++++.+.|.+.. .+..+|.+|..+|+++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------------------~~~~la~~~~~~~~~~ 55 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV-------------------------YYTNRALCYLKMQQPE 55 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-------------------------HHHHHHHHHHHTTCHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH-------------------------HHHHHHHHHHHhcCHH
Confidence 456778888999999999999999999999998876432 2467889999999999
Q ss_pred HHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHH
Q 039706 809 EAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYK 888 (1166)
Q Consensus 809 eAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~ 888 (1166)
+|+..+++++...+ .....+..+|.++...|++++|+..|++++.+++ .+...+........
T Consensus 56 ~A~~~~~~al~~~p--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p----~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 56 QALADCRRALELDG--------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK----EQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHHHHHTTSCT--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HTTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHhCC--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cchhhHHHHHHHHH
Confidence 99999998855443 3355677889999999999999999999999884 33222111111111
Q ss_pred HhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 889 ALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 889 ~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+..++...........|....+...++.++ .|++++|+..|++++++.|.+..
T Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~ 170 (281)
T 2c2l_A 118 ---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGH 170 (281)
T ss_dssp ---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHH
T ss_pred ---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhh
Confidence 122222333333345677777777777765 79999999999999999887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-10 Score=115.58 Aligned_cols=128 Identities=15% Similarity=0.027 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHH
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESG--------NGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTA 864 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~--------~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~k 864 (1166)
.+..+|..++..|++++|+..|++++.. .+.... .....+..+..+.++|.+++..|+|++|+.+|++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE----WVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH----HHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH----HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3567999999999999999999998542 111000 0011445677889999999999999999999999
Q ss_pred HHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH-HHHHHHHHHHHHhhCHH
Q 039706 865 ALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL-KAISRRATLYEMIRDYD 928 (1166)
Q Consensus 865 ALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~-~A~~~LA~ay~~lGdye 928 (1166)
+|.++ |.++.+|+.+|.+|..+|++++|+.+|++++.++|++. .+...++.+...++++.
T Consensus 89 al~~~----p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 89 VLKRE----ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcC----CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998 88999999999999999999999999999999999998 66777777776655443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=112.16 Aligned_cols=109 Identities=29% Similarity=0.344 Sum_probs=100.8
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchh---HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA---AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~---a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
...+..+..+|..++..|+|++|+.+|++++.+. |.. ..+|+++|.+|..+|++++|+.+|++++.++|.++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 4457778889999999999999999999999987 555 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+++.+|.+|..+|++++|+..|++++++.|++.+.+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 999999999999999999999999999988876543
|
| >2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A | Back alignment and structure |
|---|
Probab=99.16 E-value=8.5e-12 Score=115.42 Aligned_cols=59 Identities=25% Similarity=0.380 Sum_probs=51.2
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCC
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSD 1059 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd 1059 (1166)
.++|.+|||.+.++..+||+|||++|++|||||++.. +..+.|+.+|++|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~-----------------~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQ-----------------PYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTS-----------------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----------------hhHhHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999998631 1124689999999999999964
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-10 Score=132.39 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=99.5
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc------------CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE------------SHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e------------~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe 905 (1166)
.+..+..+|..++..|+|++|+.+|++||.+.+. ..|....+|+++|.+|..+|+|++|+.+|++||+
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3455777899999999999999999999983211 2378899999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 906 ldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
++|+++.+|+.+|.+|..+|++++|+.+|++|+++.|.+....
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~ 344 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 344 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999999999876543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-10 Score=110.87 Aligned_cols=99 Identities=5% Similarity=-0.126 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
++.+|.+++..|++++|+..|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---------------- 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---------------- 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------
Confidence 4678999999999999999999999999999999999999999999999999998887776665
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
++.++..+|.+|..+|++++|+..|+++++++|.+
T Consensus 84 ----------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 84 ----------------------------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ----------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 44556677777777777777777777777777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-10 Score=115.69 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
.+..+|.+|+..|++++|+.+|++++...+ .....+..+|.+++..|+|++|+.+|++++.++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--- 75 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP--------------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--- 75 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---
Confidence 356799999999999999999999854333 346678889999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
|.+..+|+++|.+|..+|++++|+.+|+++++++|++..+|+.++....
T Consensus 76 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 76 -PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999998877776543
|
| >1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-11 Score=111.92 Aligned_cols=61 Identities=18% Similarity=0.376 Sum_probs=54.9
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.++|.+|||++. ++..+||++||+++++||||+.+ ..++|++|++||++|+|+.
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~------------------------~~~~f~~i~~AYe~L~~~~ 66 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG------------------------SHALMQELNSLWGTFKTEV 66 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC------------------------CHHHHHHHHHHHHHHhhHH
Confidence 379999999999 99999999999999999999964 1367999999999999999
Q ss_pred hhcccch
Q 039706 1062 KRSRYDL 1068 (1166)
Q Consensus 1062 kR~~YD~ 1068 (1166)
+|..++.
T Consensus 67 ~r~~~~~ 73 (79)
T 1faf_A 67 YNLRMNL 73 (79)
T ss_dssp HHHTTCC
T ss_pred HHHHHhc
Confidence 9988654
|
| >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C | Back alignment and structure |
|---|
Probab=99.14 E-value=7.7e-12 Score=128.80 Aligned_cols=64 Identities=27% Similarity=0.389 Sum_probs=55.8
Q ss_pred cchhhhcccCCCCC--HHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESSVS--VADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~as--~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.++|++|||++.++ .++||+|||++|+++||||++. +++|++|++||++|+||.
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~------------------------~e~F~~I~~AYevLsdp~ 66 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------------------------EEKMKKMNTLYKKMEDGV 66 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C------------------------CTTTTHHHHHHHHHHHHH
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC------------------------HHHHHHHHHHHHHhCCHH
Confidence 48999999999998 6999999999999999999752 247999999999999999
Q ss_pred hhcccchhhh
Q 039706 1062 KRSRYDLEEE 1071 (1166)
Q Consensus 1062 kR~~YD~~~~ 1071 (1166)
+|+.||.++.
T Consensus 67 kR~~YD~~G~ 76 (174)
T 2pf4_E 67 KYAHQPDFGG 76 (174)
T ss_dssp HHHTSCGGGG
T ss_pred HHHHHhccCC
Confidence 9999999764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.1e-10 Score=107.33 Aligned_cols=151 Identities=14% Similarity=0.094 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHH
Q 039706 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAI 811 (1166)
Q Consensus 732 ~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl 811 (1166)
..++..+|.++...|++++|+.++++++.+.+..... ......+..+|.+|...|++++|+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~g~~~~A~ 69 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-------------------AAERIAYSNLGNAYIFLGEFETAS 69 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc-------------------hHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4678899999999999999999999999987653211 122334577999999999999999
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHH
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKA 889 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~ 889 (1166)
.++++++.. ..........+..+..+|.++...|++++|+.+|++++.+.. ...+..+.++.++|.+|..
T Consensus 70 ~~~~~a~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 70 EYYKKTLLL--------ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp HHHHHHHHH--------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 999997431 111222334466788899999999999999999999998753 2234557789999999999
Q ss_pred hhchhHHHHHHHHHHHhCCC
Q 039706 890 LRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 890 lGq~eeAi~~lekALeldP~ 909 (1166)
+|++++|+.++++++++...
T Consensus 142 ~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HTCHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-10 Score=107.07 Aligned_cols=104 Identities=10% Similarity=0.026 Sum_probs=94.0
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRA 918 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA 918 (1166)
++.+|..++..|+|++|+..|++++...+.. +....+++.+|.+|..+|++++|+..|++++.++|++ +.+++.+|
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 4567999999999999999999999987322 3334799999999999999999999999999999999 89999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.+|..+|++++|+..|+++++..|+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 9999999999999999999999988754
|
| >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-11 Score=112.49 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=55.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.++|.+|||..+++.++||++||+++++||||+++.. .+.|+++|++|++||++|+|...|
T Consensus 16 ~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~-------------------~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-------------------HDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-------------------HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-------------------hHHHHHHHHHHHHHHHHHHhhccc
Confidence 4899999999999999999999999999999997631 246889999999999999998777
Q ss_pred cc
Q 039706 1064 SR 1065 (1166)
Q Consensus 1064 ~~ 1065 (1166)
..
T Consensus 77 ~~ 78 (88)
T 1iur_A 77 DQ 78 (88)
T ss_dssp SS
T ss_pred cc
Confidence 33
|
| >1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-11 Score=127.83 Aligned_cols=66 Identities=26% Similarity=0.432 Sum_probs=58.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.++|.+|||.+.++..+||++||+++++|||||++.. .....|+++|++|++||++|+||.+|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~-----------------~~e~~A~~~F~~I~eAYevLsD~~kR 179 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ-----------------PYEQYAKMIFMELNDAWSEFENQGQK 179 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSC-----------------TTHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCc-----------------chHHHHHHHHHHHHHHHHHHCCHHhh
Confidence 4899999999999999999999999999999998631 11135889999999999999999999
Q ss_pred ccc
Q 039706 1064 SRY 1066 (1166)
Q Consensus 1064 ~~Y 1066 (1166)
+.|
T Consensus 180 ~~Y 182 (182)
T 1n4c_A 180 PLY 182 (182)
T ss_dssp CCC
T ss_pred hhC
Confidence 988
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-08 Score=126.14 Aligned_cols=198 Identities=9% Similarity=-0.063 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHH
Q 039706 717 ALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVI-QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCC 795 (1166)
Q Consensus 717 ALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi-~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~ 795 (1166)
....|+++|...|..+.+|+..|..+...|+.++|+ ..|++++...|... ..+.
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~-------------------------~Lwl 382 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA-------------------------VLAF 382 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH-------------------------HHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH-------------------------HHHH
Confidence 457799999999999999999999999999999997 99999998877531 1134
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCch--hhhhhh-----hc-cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 796 LIFKSYFTLGRLEEAIAALERHESGNGGKM--LESLIP-----LA-GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 796 lLA~ay~~lGd~eeAl~~lekAl~~~~~k~--le~a~~-----L~-~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
.++..+...|++++|...|++++..-+... +....+ +. ........|...+....+.+..+.|...|.+|++
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 577888899999999999999753210000 000000 00 0001234566667778888999999999999998
Q ss_pred ccccCCchhHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 868 CTVESHPFAAICFCNRAAAYKALRH-ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 868 l~~e~~p~~a~a~~nlA~ay~~lGq-~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
..+ +....+|...|.+....+. ++.|...|+++|+..|+.+..|...+......|+.+.|...|++|+...|
T Consensus 463 ~~~---~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 463 LKK---LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp TGG---GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred hcC---CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 621 3345667666776666654 89999999999999999999999999999999999999999999998876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-11 Score=137.99 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHH
Q 039706 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEA 810 (1166)
Q Consensus 731 ~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeA 810 (1166)
....+..+|.+++..|+|++|+..|++++.+.|.+. .+...+++.++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~---------------------------------~~~~~~~~~~~ 224 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF---------------------------------MFQLYGKYQDM 224 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH---------------------------------HHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch---------------------------------hhhhcccHHHH
Confidence 345678899999999999999999999998876421 11123333444
Q ss_pred HHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh
Q 039706 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 811 l~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l 890 (1166)
...+. ...+.++|.+|+..++|++|+.+|+++|.++ |.+..+|+++|.+|..+
T Consensus 225 ~~~l~-----------------------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~a~~~~ 277 (338)
T 2if4_A 225 ALAVK-----------------------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE----EKNPKALFRRGKAKAEL 277 (338)
T ss_dssp HHHHH-----------------------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTT
T ss_pred HHHHH-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHc
Confidence 33321 1256778999999999999999999999998 88899999999999999
Q ss_pred hchhHHHHHHHHHHHhCCChHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 891 RHITDAIADCNLAIALDGNYLKAISRRATLY-EMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP~~~~A~~~LA~ay-~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|++++|+.+|+++++++|++..++..++.+. ...+.+++|...|++++.+.|.+..
T Consensus 278 g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 278 GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp TCHHHHHHHHHHTTC------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999999999999999999999999999984 4567788899999999999887643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=118.41 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=87.1
Q ss_pred HHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchh----------HHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHIT----------DAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~e----------eAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
-+.+.|++|+..|+++++++ |.++.+|+++|.++..+++++ +|+..|++||+++|++..+|+++|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~----P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 45678999999999999999 999999999999999998864 9999999999999999999999999
Q ss_pred HHHHhh-----------CHHHHHHHHHHHHHHhhhhHHh
Q 039706 920 LYEMIR-----------DYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 920 ay~~lG-----------dyeeAi~~yekALeL~P~~~e~ 947 (1166)
+|..+| ++++|+.+|++|++++|++...
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 999885 8999999999999999987543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.11 E-value=6.7e-10 Score=104.92 Aligned_cols=102 Identities=24% Similarity=0.294 Sum_probs=95.2
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh-------
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------- 910 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------- 910 (1166)
.+..+..+|..++..|++++|+.+|++++.+. |.++.+++++|.+|..+|++++|+.+|++++.+.|.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 35567788999999999999999999999988 7788999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 911 LKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 911 ~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
..+++.+|.+|..+|++++|+..|++++++.|+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999999998773
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=109.80 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=84.3
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
..|++++|+.+|+++|++.+ ..|....+|+++|.+|..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 36899999999999999820 02889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHh
Q 039706 931 ASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 931 i~~yekALeL~P~~~e~ 947 (1166)
+..|++++++.|.+.+.
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 99999999998887553
|
| >3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-11 Score=115.56 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=54.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.+||.+||+.. ++..+||++||++|++|||||++.. ....+.+..|+++|++|++||++|+|+.
T Consensus 41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~-------------~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQK-------------GASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHT-------------TCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCc-------------ccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 58999999996 9999999999999999999997521 0123456678999999999999999986
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-09 Score=98.94 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+|+.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+.+|++++.+.|.+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------- 81 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY------- 81 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH-------
Confidence 4567889999999999999999999999999999999999999999999999999999999999887533211
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG 746 (1166)
..... +...+++++|+.++++++.+.|.+..++..++.++..+|
T Consensus 82 -------------~la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 82 -------------NLGNA--YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -------------HHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred -------------HHHHH--HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 11111 224799999999999999999999999999999987754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=106.89 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=95.1
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC--hHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN--YLKAISR 916 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~--~~~A~~~ 916 (1166)
...+..+|.+++..|++++|+.+|++++.+. |....+|+++|.++..+|++++|+..|+++++++|. +..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD----PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 3456778999999999999999999999988 778899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHh-hCHHHHHHHHHHHHHHhhhh
Q 039706 917 RATLYEMI-RDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 917 LA~ay~~l-GdyeeAi~~yekALeL~P~~ 944 (1166)
+|.+|..+ |++++|+..|++++...|..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999876653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=133.01 Aligned_cols=109 Identities=24% Similarity=0.325 Sum_probs=93.1
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhH-----------------HHHHHHHHHHHHhhchhHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA-----------------ICFCNRAAAYKALRHITDAIA 898 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a-----------------~a~~nlA~ay~~lGq~eeAi~ 898 (1166)
+..+..++.+|+.++..|+|++|+.+|++|+.+. |.+. .+|+++|.||..+|+|++|+.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM----GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS----CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456667888999999999999999999999987 5554 489999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 899 DCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 899 ~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+|+++|+++|++..+|+++|.+|..+|++++|+.+|++++++.|.+....
T Consensus 252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~ 301 (338)
T 2if4_A 252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301 (338)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999999999999999999999999876654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=126.96 Aligned_cols=136 Identities=17% Similarity=0.129 Sum_probs=113.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCc--hhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGK--MLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k--~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e 871 (1166)
+..+|..|+..|++++|+..|++++...+.. ...........+..+..+.++|.+|+..++|++|+.+|++||+++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Confidence 4668999999999999999999985411100 000000011345567889999999999999999999999999988
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
|.++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..++++++|...
T Consensus 304 --p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 --PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999998887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-09 Score=100.29 Aligned_cols=112 Identities=23% Similarity=0.255 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
..+|.++...|++++|+..+++++...+ .....+..+|.++...|++++|+.+|++++.+. |
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~ 74 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDP--------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----P 74 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCc--------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----C
Confidence 4456666666666666666666532211 123344455666666666666666666666655 4
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
....+++++|.+|..+|++++|+..+++++.++|.+..++..++.++..+
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 45556666666666666666666666666666666666666666665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-09 Score=97.34 Aligned_cols=113 Identities=18% Similarity=0.092 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
...++.+|.+++..|++++|+..|++++.++|.+..+++.+|.++..+|++++|+.+|++++.+.|.+...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------- 76 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS------- 76 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH-------
Confidence 3567889999999999999999999999999999999999999999999999999999999999998543221
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEAL 742 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y 742 (1166)
..+.. +...|++++|+..+++++++.|.++.++..++.+.
T Consensus 77 -------------~~a~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 77 -------------RKAAA--LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp -------------HHHHH--HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -------------HHHHH--HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 11111 22479999999999999999999999998888765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-09 Score=104.50 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
....|+.+|.+++..|+|++|+..|++++.++|.+..+++.+|.+|..+|++++|+.+|++++.++|++...+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF----- 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-----
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH-----
Confidence 345678899999999999999999999999999999999999999999999999999999999988875432211
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHc
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY-----SEKLLEMKAEALFML 745 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~-----~~~al~~lA~~y~~l 745 (1166)
.+.+ +...|++++|+..|++++.+.|. ...+...+..+....
T Consensus 83 ---------------l~~~--~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 83 ---------------LGQC--QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp ---------------HHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred ---------------HHHH--HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12367788888888888877776 555555555554433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.03 E-value=9.4e-11 Score=140.54 Aligned_cols=137 Identities=12% Similarity=0.009 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+|+++|.+|+..|+|++|+..|++|++++|++..+|..+|.+|..+|++++|+.+|+++++++|++...+..+
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l------ 80 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR------ 80 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH------
Confidence 34677899999999999999999999999999999999999999999999999999999999999864432221
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH--HHHccCHHHHHHHHH----------
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEA--LFMLRKYEEVIQLCE---------- 756 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~--y~~lGdyeeAi~~le---------- 756 (1166)
+.+ +...|++++|+..|++++++.|.+..++..++.+ +..+|++++|+..++
T Consensus 81 --------------g~~--~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 81 --------------AAS--NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp --------------HHH--HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCT
T ss_pred --------------HHH--HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhh
Confidence 111 2247999999999999999999999999999988 889999999999999
Q ss_pred -HHHHhccCCCC
Q 039706 757 -QTFHFAEKNSP 767 (1166)
Q Consensus 757 -kALel~p~n~~ 767 (1166)
+++.+.|....
T Consensus 145 ~~al~~~~~~~~ 156 (477)
T 1wao_1 145 IESMTIEDEYSG 156 (477)
T ss_dssp TSSCCCCTTCCS
T ss_pred hhhccccccccc
Confidence 55555555433
|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A | Back alignment and structure |
|---|
Probab=99.02 E-value=5.1e-11 Score=124.26 Aligned_cols=66 Identities=27% Similarity=0.524 Sum_probs=58.4
Q ss_pred Cccchhhhc------ccCC-CCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHH
Q 039706 982 IPLDMYLIL------GVES-SVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAY 1054 (1166)
Q Consensus 982 ~~~dyY~iL------Gl~~-~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy 1054 (1166)
...+||.+| |+++ +++..+|+++||+++++|||||++. +...|+.|++||
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----------------------a~~~f~~i~~AY 65 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----------------------GSEQSSTLNQAY 65 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-----------------------CSSGGGSHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-----------------------HHHHHHHHHHHH
Confidence 346999999 4664 8999999999999999999999862 446799999999
Q ss_pred HHhCCCchhcccchhh
Q 039706 1055 AVLSDPSKRSRYDLEE 1070 (1166)
Q Consensus 1055 ~vLsd~~kR~~YD~~~ 1070 (1166)
+||+||.+|..||..+
T Consensus 66 ~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 66 HTLKDPLRRSQYMLKL 81 (181)
T ss_dssp HHHHSHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHH
Confidence 9999999999999966
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.00 E-value=8e-11 Score=141.15 Aligned_cols=135 Identities=13% Similarity=0.062 Sum_probs=114.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
..+|.+|+..|++++|+.+|++++... +..+..+.++|.++...|+|++|+.+|++|++++ |
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p 71 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN--------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----K 71 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----T
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C
Confidence 346777889999999999999985433 3346778889999999999999999999999998 8
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH--HHHhhCHHHHHHHHH-----------HHHHHh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL--YEMIRDYDHAASDFH-----------RLIALL 941 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a--y~~lGdyeeAi~~ye-----------kALeL~ 941 (1166)
.++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.+ +..+|++++|+..++ +++++.
T Consensus 72 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~ 151 (477)
T 1wao_1 72 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIE 151 (477)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccc
Confidence 8899999999999999999999999999999999999999999998 889999999999999 777776
Q ss_pred hhhHHh
Q 039706 942 TKQIEK 947 (1166)
Q Consensus 942 P~~~e~ 947 (1166)
|.....
T Consensus 152 ~~~~~~ 157 (477)
T 1wao_1 152 DEYSGP 157 (477)
T ss_dssp TTCCSC
T ss_pred cccccc
Confidence 665443
|
| >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-10 Score=102.68 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=50.6
Q ss_pred cchhhhcccCC-CCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 984 LDMYLILGVES-SVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 984 ~dyY~iLGl~~-~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
.++|.+|||++ .++.++|+++||+++++||||+.+ ..++|++|++||++|+|+..
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g------------------------~~~~f~~i~~Aye~L~~~~~ 69 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG------------------------SPFLATKINEAKDFLEKRGI 69 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC------------------------CHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC------------------------CHHHHHHHHHHHHHHhhhhh
Confidence 48999999998 799999999999999999999954 12489999999999999877
Q ss_pred hc
Q 039706 1063 RS 1064 (1166)
Q Consensus 1063 R~ 1064 (1166)
|+
T Consensus 70 rk 71 (71)
T 2guz_A 70 SK 71 (71)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-08 Score=97.85 Aligned_cols=118 Identities=10% Similarity=-0.042 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFL---RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~---~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
+++++|.+++..|+|++|+..|++++..+|++. .+++.+|.+|..+|++++|+.+|++++...|++....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~------- 76 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAA------- 76 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH-------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccH-------
Confidence 468899999999999999999999999999998 8999999999999999999999999999999853210
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG 746 (1166)
..+...+.+ +...|++++|+..|++++...|.++.+...+..+....+
T Consensus 77 ----------~~~~~la~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 77 ----------GGLLKLGLS--QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp ----------HHHHHHHHH--HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred ----------HHHHHHHHH--HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 111111222 224789999999999999999988877766665554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-09 Score=99.23 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+++.+|.+++..|++++|+..|+++++++|.+..+++.+|.+|..+|++++|+.+|++++++.|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------- 73 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE------------- 73 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT-------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-------------
Confidence 3445577777777777777777777777777777777777777777777777777776666554430
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML-RKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l-GdyeeAi~~lekALel~p~n 765 (1166)
....++..+|.++..+ |++++|+.++++++...|..
T Consensus 74 -----------------------------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 74 -----------------------------------------YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred -----------------------------------------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 0556677777888888 88888888888887777654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.1e-09 Score=101.64 Aligned_cols=115 Identities=11% Similarity=0.060 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
.+..+|..++..|++++|+.+|++++...+.. ......+..+|.++...++|++|+.+|++++.++
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 95 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATP-----------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--- 95 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-----------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---
Confidence 35678999999999999999999986655431 1135677888999999999999999999999988
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
|.+..+|+++|.+|..+|++++|+.+|++++.++|++..++..++.+..
T Consensus 96 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 96 -GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp -SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred -ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 7789999999999999999999999999999999999999988887754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6.8e-09 Score=97.94 Aligned_cols=118 Identities=11% Similarity=0.102 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..+|.+++..|++++|+.+|++++...+ .....+..+|.++...|++++|+.+|++++.+.+...
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP--------------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence 56799999999999999999999754332 2356677889999999999999999999999873221
Q ss_pred chh---HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 874 PFA---AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 874 p~~---a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
+.. ..+++++|.+|..+|++++|+.+|++++.+.| +..++..++.++..+++
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 111 88999999999999999999999999999999 58888888888776654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.1e-10 Score=103.83 Aligned_cols=95 Identities=21% Similarity=0.279 Sum_probs=87.4
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh------H
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------L 911 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------~ 911 (1166)
.+..+..+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+.+|+++++++|++ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 35667788999999999999999999999998 8889999999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
.+++.+|.++..+|++++|+..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999999999999998888776554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.3e-09 Score=97.86 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 856 eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
++|+..|++++..+ |.++.+|+++|.+|..+|++++|+..|++++.++|.+..+|+.+|.+|..+|++++|+..|+
T Consensus 2 ~~a~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQG----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46899999999988 88899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHH
Q 039706 936 RLIALLTKQIE 946 (1166)
Q Consensus 936 kALeL~P~~~e 946 (1166)
+++++.|...+
T Consensus 78 ~al~~~~~~~~ 88 (115)
T 2kat_A 78 SGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHhcccccc
Confidence 99999887643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-09 Score=109.01 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=88.2
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHH
Q 039706 620 ALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECM 699 (1166)
Q Consensus 620 ~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~ 699 (1166)
++++|++|+..|+++++++|+++.+|+++|.++..+++++.+.....
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------------- 60 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------------- 60 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH---------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh---------------------------------
Confidence 45679999999999999999999999999999999988876655321
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhccCC
Q 039706 700 QRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR-----------KYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 700 ~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG-----------dyeeAi~~lekALel~p~n 765 (1166)
.+++|+..|++||+++|+...+|+.+|.+|..+| ++++|+.+|+++++++|++
T Consensus 61 -------------~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 61 -------------MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp -------------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred -------------HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 2578899999999999999999999999999885 8999999999999999975
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-08 Score=112.09 Aligned_cols=232 Identities=13% Similarity=-0.011 Sum_probs=162.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
.+.+..+|+.+|+|.... .++....+...++..+. ++ |+..|++.+...+......
T Consensus 48 ~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~----------- 103 (310)
T 3mv2_B 48 LFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYEL----------- 103 (310)
T ss_dssp HHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHH-----------
T ss_pred HHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHH-----------
Confidence 355678899999988531 23334445555555542 32 8888888876643321111
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS--YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P--~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
..++.++ ...|++++|+.++.+.|..+| .+.+++..++.+|+.+|+.+.|.+.++++.+.+|+...+
T Consensus 104 ---------~~la~i~--~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~ 172 (310)
T 3mv2_B 104 ---------YLLATAQ--AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG 172 (310)
T ss_dssp ---------HHHHHHH--HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred ---------HHHHHHH--HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence 1122222 236999999999999999987 899999999999999999999999999998886620000
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHH--HHHHHHcC--CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhh
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLI--FKSYFTLG--RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKS 844 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lL--A~ay~~lG--d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~ 844 (1166)
.. .+ ...+ +.+.+..| ++.+|...|+++....+. ......+++
T Consensus 173 ------------~d-------~~--l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~------------~~~~~lLln 219 (310)
T 3mv2_B 173 ------------DN-------EM--ILNLAESYIKFATNKETATSNFYYYEELSQTFPT------------WKTQLGLLN 219 (310)
T ss_dssp ------------HH-------HH--HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS------------HHHHHHHHH
T ss_pred ------------ch-------HH--HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC------------cccHHHHHH
Confidence 00 00 1223 33355566 999999999996443332 112223332
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccC------CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVES------HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~------~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
++..+|+|++|...++.+++..|+. .|.++.++.|+..+...+|+ +|.++++++.+.+|+++.+.-
T Consensus 220 ---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 220 ---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp ---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 7899999999999999888764321 27799999999999999997 899999999999999986543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.1e-09 Score=100.40 Aligned_cols=98 Identities=14% Similarity=-0.002 Sum_probs=82.2
Q ss_pred HcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHH
Q 039706 803 TLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCN 882 (1166)
Q Consensus 803 ~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~n 882 (1166)
.+|++++|+.+|++++.... ..+.....+..+|.+++..|+|++|+.+|+++++++ |.++.++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~-----------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~ 66 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL-----------QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF----PNHQALRVF 66 (117)
T ss_dssp -----CCCHHHHHHHHSSCC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC-----------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchHHHHH
Confidence 46889999999999844211 135667888999999999999999999999999998 888999999
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 883 RAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 883 lA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
+|.+|..+|++++|+..|++++.+.|+++.+..
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999887654
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.3e-10 Score=145.16 Aligned_cols=68 Identities=37% Similarity=0.599 Sum_probs=40.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||++.++.++||++||+++++|||||++.. ..|+++|++|++||++|+||.+|
T Consensus 21 ~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~--------------------~~~~~~f~~i~~ay~~L~~~~~r 80 (780)
T 3apo_A 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--------------------PNAHGDFLKINRAYEVLKDEDLR 80 (780)
T ss_dssp --CHHHHTCCTTCCHHHHHHHHCC-------------------------------------------CTHHHHHHSHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------hHHHHHHHHHHHHHHHHcChHHH
Confidence 5999999999999999999999999999999997521 35788999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||.++.
T Consensus 81 ~~yd~~~~ 88 (780)
T 3apo_A 81 KKYDKYGE 88 (780)
T ss_dssp HHHTTC--
T ss_pred HHHHhhcc
Confidence 99999775
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=118.68 Aligned_cols=197 Identities=6% Similarity=-0.074 Sum_probs=135.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC--------CCCCccccCcccccCccchhh--hhh
Q 039706 719 GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK--------NSPPLDANGQSMELDSSESTK--HVS 788 (1166)
Q Consensus 719 e~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~--------n~~a~~~~g~~l~ld~~~~~~--~~~ 788 (1166)
..|++|+...|.+..++..++.+....|++++|..+|++++...+. .+.. ...+.. ...
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~-----------~~~~~~~~~~~ 433 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN-----------ESAINQLKSKL 433 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC-----------HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc-----------hhhhhhhccch
Confidence 4444455555555666666677777777777777777777654210 0000 000000 001
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC-ChHHHHHHHHHHHh
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG-RHSEAVEHYTAALS 867 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G-~yeEAie~y~kALe 867 (1166)
..+ |...+......|..+.|...|.+|+...+. .. ...+...+.+.+..+ +++.|...|+.+|+
T Consensus 434 ~~v--Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~-----------~~--~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 434 TYV--YCVYMNTMKRIQGLAASRKIFGKCRRLKKL-----------VT--PDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp HHH--HHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-----------SC--THHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----------CC--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 112 344667777889999999999998543110 00 112233355555554 59999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 868 CTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG---NYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 868 l~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP---~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.. |.....|...+......|+.+.|...|++|+...| .....|......-...|+.+.+...++++++..|+.
T Consensus 499 ~~----p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 499 YF----ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HC----CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 87 77788888888888899999999999999999988 456777778888888999999999999999999986
Q ss_pred H
Q 039706 945 I 945 (1166)
Q Consensus 945 ~ 945 (1166)
.
T Consensus 575 ~ 575 (679)
T 4e6h_A 575 N 575 (679)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-08 Score=116.70 Aligned_cols=141 Identities=9% Similarity=-0.057 Sum_probs=116.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc----ccCC
Q 039706 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT----VESH 873 (1166)
Q Consensus 798 A~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~----~e~~ 873 (1166)
+..+..+|+|++|+..+++++..... .--...+..+..+.++|.+|..+|+|++|+.+|+++|++. ...+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEP------VFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTT------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34566899999999999997542111 0012355678889999999999999999999999999875 3678
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-----C---CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIAL-----D---GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel-----d---P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
|..+..++++|.+|..+|+|++|+..|++|+++ . |...+.+..++.++..++.|++|...|+++.+..-++
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999987 2 4445677889999999999999999999997654333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4.6e-08 Score=87.16 Aligned_cols=84 Identities=25% Similarity=0.247 Sum_probs=74.9
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
.+..+..+|..++..+++++|+.+|++++.+. |.+..+|+++|.+|..+|++++|+..|+++++++|.+..++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 45667778999999999999999999999887 77788999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 039706 918 ATLYEMIR 925 (1166)
Q Consensus 918 A~ay~~lG 925 (1166)
|.++..+|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99987764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-08 Score=91.60 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=81.0
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH-HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI-CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~-a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
+.+|..++..|+|++|+..|+++++++ |.+.. +|+++|.+|..+|++++|+..|+++++++|++..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence 456889999999999999999999988 88888 99999999999999999999999999999999988754
Q ss_pred HHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 922 EMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 922 ~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
+.+.+|+..|++++.+.|.+.
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHCCS
T ss_pred ---HHHHHHHHHHHHHhccCcccc
Confidence 677888899998888877653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-08 Score=90.82 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=69.0
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|...+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999887644
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-05 Score=93.95 Aligned_cols=307 Identities=11% Similarity=-0.069 Sum_probs=184.7
Q ss_pred CcchhHHHHHHHHHhchH-HHHHHHHHHHHHcC-ChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH----HcCChHHH
Q 039706 591 EPNLASAETIAAQEACEK-WRLSNRAATRMALG-RMRDALSDCMLAVAI---DPDFLRVQVRAANCHL----ALGEIEDA 661 (1166)
Q Consensus 591 ep~~A~a~~~aAIe~~e~-~ay~nrA~ayl~lG-~y~eAI~~fekALel---dP~~~~A~~~LA~lyl----~lGd~eeA 661 (1166)
+.+.+..-+..|+..+|. ..|..........+ ..+.....|+.|+.. +|.....|...+..+. ..++.+.+
T Consensus 29 ~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v 108 (493)
T 2uy1_A 29 DYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI 108 (493)
T ss_dssp CHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence 344555666677776653 23333343333444 234556778888874 7888888888887754 35678899
Q ss_pred HHHHHHHHHcCCCchhH--HHHHHHHHHHh----------------hhHH----hHHH--------HHHHHHHHHHhhcC
Q 039706 662 SKYFRMCLQSGSDVCVD--QKIAVEASDGL----------------QKAQ----KVSE--------CMQRSAQLLQNKTS 711 (1166)
Q Consensus 662 l~~fekALel~P~n~~a--~~~l~Ea~~~L----------------~k~~----~~~e--------~~~~a~~~l~~~~~ 711 (1166)
...|++||.. |..... +..+....... .... .+.. .+..+.........
T Consensus 109 R~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 109 RNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 9999999985 542211 11111100000 0000 0000 11111111110000
Q ss_pred C--C---HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhh
Q 039706 712 N--D---AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKH 786 (1166)
Q Consensus 712 g--d---~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~ 786 (1166)
+ + ...+...|+++|...|..+.+|+..+..+...|+.++|...|++++.. |....
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~------------------- 247 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF------------------- 247 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH-------------------
T ss_pred cCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH-------------------
Confidence 1 1 345678999999999999999999999999999999999999999999 75421
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHH
Q 039706 787 VSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAAL 866 (1166)
Q Consensus 787 ~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kAL 866 (1166)
+|.. |....+.++....+..+........ . .+.........|...+..+.+.+..+.|...|.+|
T Consensus 248 ----l~~~------y~~~~e~~~~~~~l~~~~~~~~~~~--~--~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A- 312 (493)
T 2uy1_A 248 ----LSLY------YGLVMDEEAVYGDLKRKYSMGEAES--A--EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL- 312 (493)
T ss_dssp ----HHHH------HHHHTTCTHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-
T ss_pred ----HHHH------HHhhcchhHHHHHHHHHHHhhccch--h--hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 1111 1111111111111111110000000 0 00001112234555566667788899999999999
Q ss_pred hccccCCchhHHHHHHHHHHHHHhh-chhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 867 SCTVESHPFAAICFCNRAAAYKALR-HITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 867 el~~e~~p~~a~a~~nlA~ay~~lG-q~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
... +....+|...|......+ +.+.|...|+.+++..|+.+..+...+.....+|+.+.|...|+++
T Consensus 313 ~~~----~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 313 GNE----GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp TTS----CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred hCC----CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 422 234567777777777777 5999999999999999999888888888888999999999999987
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.6e-07 Score=109.78 Aligned_cols=130 Identities=12% Similarity=0.006 Sum_probs=102.3
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--------
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL-------- 906 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel-------- 906 (1166)
+......+..+..+|+|++|+..|+++|++.. ..+|..+.++.++|.+|..+|+|++|+.+++++|++
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 33445566678889999999999999998753 567888999999999999999999999999999987
Q ss_pred CCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhh
Q 039706 907 DGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTA 973 (1166)
Q Consensus 907 dP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~ 973 (1166)
+|+-+..+.+||.+|..+|+|++|+..|++|+++........ .....++...+.+++..+..
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-----Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-----HPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-----SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHHHHH
Confidence 355567899999999999999999999999999976654322 11123344455555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-07 Score=85.70 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV 675 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n 675 (1166)
..+|+++|.+++..|+|++|+..|+++++++|.+..+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45678899999999999999999999999999999999999999999999999999999999999986
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-07 Score=81.77 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
..+++++|.+++..|++++|+..|++++.++|.+..+++.+|.+|..+|++++|+.+|+++++++|.+...+..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999998765544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.7e-07 Score=86.04 Aligned_cols=82 Identities=12% Similarity=0.040 Sum_probs=71.8
Q ss_pred hHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 039706 580 SEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIE 659 (1166)
Q Consensus 580 a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~e 659 (1166)
++..+.+++..+|++. .+|+++|.+|+..|++++|+..|++++.++|.+..+|+.+|.+|..+|+++
T Consensus 4 a~~~~~~al~~~p~~~-------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 4 ITERLEAMLAQGTDNM-------------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp HHHHHHHHHTTTCCCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCCCcH-------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Confidence 4455666666666644 456779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 039706 660 DASKYFRMCLQSGSD 674 (1166)
Q Consensus 660 eAl~~fekALel~P~ 674 (1166)
+|+.+|++++.+.|.
T Consensus 71 ~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 71 GARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999998775
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-07 Score=83.99 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLR-VQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~-A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
+++|.+++..|+|++|+..|+++++++|.+.. +++.+|.+|..+|++++|+.+|+++++++|++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 67899999999999999999999999999999 99999999999999999999999999999986543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=87.28 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=64.4
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
+..+.+++++|.+|+.+|+|++|+..|+++++++|++..+|+.+|.+|..+|++++|+..|++++++.|.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3445677889999999999999999999999999999999999999999999999999999999987654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=101.44 Aligned_cols=105 Identities=8% Similarity=-0.024 Sum_probs=90.4
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--------CCC
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--------DGN 909 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--------dP~ 909 (1166)
.......+..+|+|++|+..|+++|++.. ..+|..+.++.++|.+|..+|+|++|+.+++++|++ +|.
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 33445567789999999999999998742 567888999999999999999999999999999987 345
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 910 YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 910 ~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
-+..++++|.+|..+|+|++|+..|++|+++......
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG 406 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 406 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence 5678999999999999999999999999999766543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-06 Score=102.09 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=87.1
Q ss_pred hHHHHHcCChHHHHHHHHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--------CCChHHH
Q 039706 846 GNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--------DGNYLKA 913 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--------dP~~~~A 913 (1166)
+......|+|++|+..|+++|++.. ..+|..+.++.++|.+|..+|+|++|+.+|+++|++ +|+-+..
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 3334456899999999999998653 567888999999999999999999999999999987 3555678
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+.+||.+|..+|+|++|+..|++|+++......
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG 417 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHG 417 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999766543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-06 Score=83.68 Aligned_cols=110 Identities=12% Similarity=-0.045 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHH
Q 039706 805 GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRA 884 (1166)
Q Consensus 805 Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA 884 (1166)
+++++|+.+|+++...... .+. +|.+|...+.+++|+.+|++|.+. .++.+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--------------~a~----lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg 64 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--------------FGC----LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLG 64 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--------------THH----HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--------------hhh----HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHH
Confidence 4688999999997443221 111 688888888999999999999984 4678999999
Q ss_pred HHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHH
Q 039706 885 AAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEM----IRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 885 ~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~----lGdyeeAi~~yekALeL 940 (1166)
.+|.. .+++++|+.+|++|.+. .++.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 65 DFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99999 89999999999999987 679999999999999 99999999999999976
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-05 Score=85.05 Aligned_cols=86 Identities=12% Similarity=-0.003 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHhccccCCch--hHHHHHHHHHHHHHh-----hchhHHHHHHHHHHHhCCCh-HHHHHHHHHHHHH-hh
Q 039706 855 HSEAVEHYTAALSCTVESHPF--AAICFCNRAAAYKAL-----RHITDAIADCNLAIALDGNY-LKAISRRATLYEM-IR 925 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~--~a~a~~nlA~ay~~l-----Gq~eeAi~~lekALeldP~~-~~A~~~LA~ay~~-lG 925 (1166)
..+|...+++||+++ |. +..+|..+|.+|..+ |+.++|.++|++||+++|+. +.+++..|..|.. ++
T Consensus 179 l~~A~a~lerAleLD----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDLW----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 568899999999999 66 677999999999996 99999999999999999985 9999999999988 59
Q ss_pred CHHHHHHHHHHHHHHhhhh
Q 039706 926 DYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 926 dyeeAi~~yekALeL~P~~ 944 (1166)
++++|...+++++...|..
T Consensus 255 d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHcCCCCC
Confidence 9999999999999987774
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-05 Score=92.78 Aligned_cols=135 Identities=10% Similarity=0.010 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHH------HcCCC
Q 039706 608 KWRLSNRAATRMALGR---MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEI----EDASKYFRMCL------QSGSD 674 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~---y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~----eeAl~~fekAL------el~P~ 674 (1166)
++-+|.+|..++..+. +.+|+.+|++|++++|+++.+|..++.+|.....+ ......+..++ .++|.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 4667889999888754 58999999999999999999999999998732111 01111111111 12222
Q ss_pred chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 675 VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 675 n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
.+. ++...... ....|++++|+..+++|+.++|. ..++..+|.++...|++++|++.
T Consensus 276 ~a~--------------------~~~alal~--~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~ 332 (372)
T 3ly7_A 276 LSI--------------------IYQIKAVS--ALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADA 332 (372)
T ss_dssp CHH--------------------HHHHHHHH--HHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHH--------------------HHHHHHHH--HHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 111 11111111 12359999999999999999975 67889999999999999999999
Q ss_pred HHHHHHhccCC
Q 039706 755 CEQTFHFAEKN 765 (1166)
Q Consensus 755 lekALel~p~n 765 (1166)
|.+|+.++|..
T Consensus 333 ~~~AlrL~P~~ 343 (372)
T 3ly7_A 333 YLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHSCSH
T ss_pred HHHHHhcCCCc
Confidence 99999999854
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.2e-06 Score=77.63 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=66.3
Q ss_pred CchhHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 873 HPFAAICFCNRAAAYKALRH---ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq---~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.|.++.++..+|.+++..++ .++|...+++||+++|+++.+++.+|.+++..|+|++|+..|+++++..|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 37888999999999987766 799999999999999999999999999999999999999999999998877
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-05 Score=94.28 Aligned_cols=120 Identities=16% Similarity=0.052 Sum_probs=95.8
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc----ccCCch
Q 039706 800 SYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT----VESHPF 875 (1166)
Q Consensus 800 ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~----~e~~p~ 875 (1166)
-+...|++++|+..+++++...... --...+..+..+.++|.+|..+|+|++|+.+|+++|.+. +..+|.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~------lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSER------LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCC------CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCc------CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 3567899999999999986533221 012345668888999999999999999999999999865 467899
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-----CCCh---HHHHHHHHHHHHHhh
Q 039706 876 AAICFCNRAAAYKALRHITDAIADCNLAIAL-----DGNY---LKAISRRATLYEMIR 925 (1166)
Q Consensus 876 ~a~a~~nlA~ay~~lGq~eeAi~~lekALel-----dP~~---~~A~~~LA~ay~~lG 925 (1166)
.+..++++|.+|..+|++++|+..|++|+++ .|++ ..++.+|+.+...++
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987 3444 455566776665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-05 Score=89.94 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=49.0
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
|..+.+|..+|.++...|++++|+..+++|+.++|+ ..+|..+|.++...|++++|+..|++|+.+.|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 566666666666666667777777777777777764 4566667777777777777777777777777765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=74.59 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 608 KWRLSNRAATRMALGR---MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~---y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
+..++.+|.+++..++ ..+|...+++||+++|+++.+++.+|.+++..|+|++|+.+|+++++.+|.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4456668999887666 799999999999999999999999999999999999999999999999998
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=78.61 Aligned_cols=120 Identities=12% Similarity=-0.037 Sum_probs=97.3
Q ss_pred cCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCch
Q 039706 746 RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKM 825 (1166)
Q Consensus 746 GdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~ 825 (1166)
+++++|+.+|+++.+... +.+ . +|.+|...+.+++|+.+|+++...
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a--------------------------~-lg~~y~~g~~~~~A~~~~~~Aa~~----- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFG--------------------------C-LSLVSNSQINKQKLFQYLSKACEL----- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTH--------------------------H-HHHHTCTTSCHHHHHHHHHHHHHT-----
T ss_pred cCHHHHHHHHHHHHcCCC--Hhh--------------------------h-HHHHHHcCCCHHHHHHHHHHHHcC-----
Confidence 468899999999987642 211 2 788888888999999999997332
Q ss_pred hhhhhhhccchHHHHHHhhhhHHHHH----cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH----hhchhHHH
Q 039706 826 LESLIPLAGTVRELLCRKSAGNEAFQ----AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA----LRHITDAI 897 (1166)
Q Consensus 826 le~a~~L~~~~~~a~~l~~lG~~~~~----~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~eeAi 897 (1166)
.....+.++|.+|.. .+++++|+.+|++|.+. .++.+++++|.+|.. .+++++|+
T Consensus 55 -----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 117 (138)
T 1klx_A 55 -----------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAV 117 (138)
T ss_dssp -----------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred -----------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHH
Confidence 235667888999999 89999999999999974 467899999999999 89999999
Q ss_pred HHHHHHHHhCCChHHHHHHHH
Q 039706 898 ADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 898 ~~lekALeldP~~~~A~~~LA 918 (1166)
.+|++|.+.. ++.+...++
T Consensus 118 ~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 118 KTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHCC--CHHHHHHHh
Confidence 9999999884 456665554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.1e-05 Score=73.88 Aligned_cols=79 Identities=13% Similarity=-0.063 Sum_probs=69.0
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccC---CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES---HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~---~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
.....+|..++..++|..|+.+|++|+...... ......++.++|.+|.++|+++.|+..++++++++|++..++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 345568999999999999999999999875321 34678899999999999999999999999999999999999888
Q ss_pred HH
Q 039706 917 RA 918 (1166)
Q Consensus 917 LA 918 (1166)
++
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00034 Score=84.03 Aligned_cols=107 Identities=7% Similarity=-0.167 Sum_probs=74.2
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCch------------------------------------hHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF------------------------------------AAICFCN 882 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~------------------------------------~a~a~~n 882 (1166)
...|...+..+...|+.++|...|++|+.. |..... ...+|..
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 445666688888999999999999999987 543210 1123444
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHhhhhHHh
Q 039706 883 RAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR-DYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 883 lA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG-dyeeAi~~yekALeL~P~~~e~ 947 (1166)
.+..+.+.+..+.|...|.+| ...+.....|...|.+....+ +.+.|...|+.+++..|+..+.
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 444455667788888888888 333334566666677666666 5888999999999887776543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.4e-05 Score=91.26 Aligned_cols=105 Identities=11% Similarity=-0.051 Sum_probs=85.4
Q ss_pred HcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc----ccCCchhHH
Q 039706 803 TLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT----VESHPFAAI 878 (1166)
Q Consensus 803 ~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~----~e~~p~~a~ 878 (1166)
..|+|++|+..+++++..... .--...+..+..+.++|.+|..+|+|++|+.+|+++|++. ...+|..+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSS------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTT------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhC------ccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 357899999999997542111 0012345678889999999999999999999999999875 367899999
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHh-----CCChHHH
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIAL-----DGNYLKA 913 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALel-----dP~~~~A 913 (1166)
.++|+|.+|..+|+|++|+..|++|+++ .|+++..
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999999999999987 3666543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=4.6e-05 Score=76.96 Aligned_cols=89 Identities=8% Similarity=-0.009 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh---chhHHHHHHHHHHHhC-C-ChHHHHHHHHHHHHHhhCHHH
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR---HITDAIADCNLAIALD-G-NYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG---q~eeAi~~lekALeld-P-~~~~A~~~LA~ay~~lGdyee 929 (1166)
...+.+.|.+.+..+ +.+..+.+++|+++.+.. +.++|+..++.+++.+ | ...++++.+|..|+++++|++
T Consensus 14 l~~~~~~y~~e~~~~----~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 455677788887765 678899999999999977 7889999999999999 7 678999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHh
Q 039706 930 AASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 930 Ai~~yekALeL~P~~~e~ 947 (1166)
|+.+++++|++.|++.++
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 999999999999988664
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00016 Score=67.64 Aligned_cols=68 Identities=9% Similarity=-0.106 Sum_probs=61.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAID-------PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeld-------P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
.+.+|..++..++|..|+..|++|++.. +....++..+|.+|.++|+++.|+.++++++++.|++...
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4679999999999999999999999863 3457899999999999999999999999999999997554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00077 Score=74.83 Aligned_cols=86 Identities=9% Similarity=-0.000 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhccCC-CCCccccCcccccCccchh
Q 039706 713 DAEIALGVIDEALFISSY--SEKLLEMKAEALFML-----RKYEEVIQLCEQTFHFAEKN-SPPLDANGQSMELDSSEST 784 (1166)
Q Consensus 713 d~eeALe~lekALel~P~--~~~al~~lA~~y~~l-----GdyeeAi~~lekALel~p~n-~~a~~~~g~~l~ld~~~~~ 784 (1166)
....|...++++++++|. +..+|..+|.+|... |+.++|..+|+++|+++|+. ...
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~---------------- 241 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDH---------------- 241 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHH----------------
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchH----------------
Confidence 468899999999999999 567999999999996 99999999999999999964 321
Q ss_pred hhhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCC
Q 039706 785 KHVSFRLWRCCLIFKSYFT-LGRLEEAIAALERHESGNGG 823 (1166)
Q Consensus 785 ~~~~~~~wr~~lLA~ay~~-lGd~eeAl~~lekAl~~~~~ 823 (1166)
++.+|..|+. .|++++|..++++++..++.
T Consensus 242 ---------~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 242 ---------HITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp ---------HHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3457777777 59999999999998775554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0002 Score=72.27 Aligned_cols=74 Identities=18% Similarity=0.031 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 608 KWRLSNRAATRMALG---RMRDALSDCMLAVAID-P-DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG---~y~eAI~~fekALeld-P-~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
..+.++.|.++.+.. +.++|+..++.+++.+ | ...++++.+|..|+++|+|++|+++++++|+++|++..+..+
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 455677999999988 7779999999999999 7 678999999999999999999999999999999997654433
|
| >2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00011 Score=63.40 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=43.3
Q ss_pred chhhhcccCCC---CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhC
Q 039706 985 DMYLILGVESS---VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLS 1058 (1166)
Q Consensus 985 dyY~iLGl~~~---as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLs 1058 (1166)
.-|.||||.+. ++.++|+++||++...+||||.+. ...+..|++|+++|.
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS------------------------~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS------------------------FYLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC------------------------HHHHHHHHHHHHHHH
Confidence 46889999998 899999999999999999999653 256788999999884
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.019 Score=68.91 Aligned_cols=166 Identities=9% Similarity=-0.008 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHc---------
Q 039706 734 LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL--------- 804 (1166)
Q Consensus 734 al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~l--------- 804 (1166)
++..+-..+.+.|++++|+++|++..+..-. +.. ..|..+-.++...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~---------------pd~---------~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQ---------------LSQ---------YHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC---------------CCH---------HHHHHHHHHHTTCCCCSSSSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---------------CCH---------hHHHHHHHHHHhCCchhhhhhc
Confidence 4555567888999999999999988765211 110 0122232333332
Q ss_pred CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHH
Q 039706 805 GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRA 884 (1166)
Q Consensus 805 Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA 884 (1166)
+.+++|+..|++.....- ..+...+..+-..|.+.|++++|+++|++..... -..+..+|..+-
T Consensus 84 ~~l~~A~~lf~~M~~~G~-------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---~~Pd~~tyn~lI 147 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKV-------------VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG---IQPRLRSYGPAL 147 (501)
T ss_dssp HHHHHHHHHHHHHHHTTC-------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCccceehHHH
Confidence 347889999887533211 1124456667788999999999999999987643 133567788888
Q ss_pred HHHHHhhchhHHHHHHHHHHHhC--CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 885 AAYKALRHITDAIADCNLAIALD--GNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 885 ~ay~~lGq~eeAi~~lekALeld--P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.+|.+.|++++|+..+++..+.. | +...|..+-.+|.+.|+.++|...|++..+.
T Consensus 148 ~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 148 FGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 89999999999999999988764 4 4678888999999999999999999987643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0061 Score=59.49 Aligned_cols=90 Identities=9% Similarity=-0.018 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH---HHHHHHHHHHhC-C-ChHHHHHHHHHHHHHhhCHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD---AIADCNLAIALD-G-NYLKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee---Ai~~lekALeld-P-~~~~A~~~LA~ay~~lGdye 928 (1166)
....+...|.+++..+ +....+.+++|+++.+..+..+ +|..++..+..+ | ..-+.++.+|..++++|+|.
T Consensus 16 ~l~~~~~~y~~e~~~~----~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 4455667777777655 5677888999999988776555 999999988877 5 56788999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHh
Q 039706 929 HAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 929 eAi~~yekALeL~P~~~e~ 947 (1166)
+|+.+++.+|++.|.+.++
T Consensus 92 ~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCCCHHH
Confidence 9999999999999988664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.06 Score=64.61 Aligned_cols=160 Identities=9% Similarity=-0.005 Sum_probs=113.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHc--CCCchh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAID--PDFLRVQVRAANCHLALGE---------IEDASKYFRMCLQS--GSDVCV 677 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeld--P~~~~A~~~LA~lyl~lGd---------~eeAl~~fekALel--~P~n~~ 677 (1166)
+...-..+.+.|++++|+..|++..+.. | +...|..+-.++...+. ++.|.+.|++.... .|+..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~- 106 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA- 106 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH-
Confidence 4444567789999999999999998753 4 45566666566654443 68899999887764 45411
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHccCHHHHHHHHH
Q 039706 678 DQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS-SYSEKLLEMKAEALFMLRKYEEVIQLCE 756 (1166)
Q Consensus 678 a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~-P~~~~al~~lA~~y~~lGdyeeAi~~le 756 (1166)
.+..+...+ ...|++++|+.+|++..... .-+...|..+-..|.+.|++++|.++++
T Consensus 107 --------------------tyn~lI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 107 --------------------TFTNGARLA--VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp --------------------HHHHHHHHH--HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------HHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 111111221 24699999999999987753 2356678888899999999999999999
Q ss_pred HHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
+..+..-. +. ...|..+..+|...|+.++|.++|++..
T Consensus 165 ~M~~~G~~---------------Pd---------~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 165 HMVESEVV---------------PE---------EPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHTTCC---------------CC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCC---------------CC---------HHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 98764211 11 1124567788999999999999999853
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0059 Score=62.21 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=77.7
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-----CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC------
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES-----HPFAAICFCNRAAAYKALRHITDAIADCNLAIALD------ 907 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~-----~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld------ 907 (1166)
.+.++.....++..+.|+.|+-.+..++.+...+ ....+.++..+|.+++..++|..|+..|++||.+.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566778899999999999999988775211 11345688899999999999999999999998652
Q ss_pred C-------------------ChHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 908 G-------------------NYLKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 908 P-------------------~~~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
+ ...+..+.+|.||.+++++.+|+..++.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1 1236889999999999999999998764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.09 Score=61.10 Aligned_cols=208 Identities=13% Similarity=0.045 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 039706 643 RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVID 722 (1166)
Q Consensus 643 ~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~le 722 (1166)
.+.+.||.+|...|++++-...+......-+..+.+ +..+.+..+...+.. ..+..+.-++...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---------------k~~k~v~~l~~~~~~-~~~~~~~~~~~~~ 83 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA---------------KAAKLVRSLVDMFLD-MDAGTGIEVQLCK 83 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH---------------HHHHHHHHHHHHHTT-SCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH---------------HHHHHHHHHHHHHhc-CCCcHHHHHHHHH
Confidence 456788899999999888888877654332211110 011111112112111 1233333344444
Q ss_pred HHHHhCCCh----HH--HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHH
Q 039706 723 EALFISSYS----EK--LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCL 796 (1166)
Q Consensus 723 kALel~P~~----~~--al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~l 796 (1166)
++++..-.. .. +-..+|.+|+..|+|.+|+..+.++++..... |.. ...+..+.+
T Consensus 84 ~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-------------dd~------~~llev~ll 144 (394)
T 3txn_A 84 DCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-------------DDK------NLLVEVQLL 144 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-------------SCT------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-------------ccc------hhHHHHHHH
Confidence 444332211 11 23478999999999999999999998765432 111 122334556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch-HHHHHHhhhhHHHH-HcCChHHHHHHHHHHHhccc-cCC
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV-RELLCRKSAGNEAF-QAGRHSEAVEHYTAALSCTV-ESH 873 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~-~~a~~l~~lG~~~~-~~G~yeEAie~y~kALel~~-e~~ 873 (1166)
-..+|..++++.++..+|.++... ...+...+ -.+.....-|..++ ..++|.+|..+|-+++.-.. ...
T Consensus 145 e~~~~~~~~n~~k~k~~l~~a~~~--------~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~ 216 (394)
T 3txn_A 145 ESKTYHALSNLPKARAALTSARTT--------ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDS 216 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------HHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhh--------hccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccccc
Confidence 778899999999999999987331 11111111 22333444588888 89999999999999875321 111
Q ss_pred chhHHHHHHHHHHHHHhhch
Q 039706 874 PFAAICFCNRAAAYKALRHI 893 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~ 893 (1166)
|....+...++.|-+..++.
T Consensus 217 ~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 217 VKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHcCCH
Confidence 32233444456666655553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0077 Score=61.36 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAID---PDF------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeld---P~~------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
-|+++.....++..+.|+.|+.....++.+. |+. .++++.+|.+++..++|..|...|++||++...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~---- 95 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA---- 95 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH----
Confidence 3778888999999999999999999877764 332 458899999999999999999999999874211
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 679 QKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 679 ~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
+.+...... ... ....+.. ...+ +...++.+.+|.||..++++++|+..++.+
T Consensus 96 ----------l~k~~s~~~-------~~~--~~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 96 ----------LSKTSKVRP-------STG--NSASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------C------------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ----------HhcCCCccc-------ccc--ccCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 000000000 000 0000000 0111 446789999999999999999999997643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.016 Score=56.58 Aligned_cols=74 Identities=18% Similarity=0.003 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 608 KWRLSNRAATRMALGRMRD---ALSDCMLAVAID-P-DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~e---AI~~fekALeld-P-~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
..+-++.|.++....+... +|..++..+..+ | ..-+.++.||..++++|+|++|+.+++.+|+..|++..+..+
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3556778889988887666 999999999877 5 567899999999999999999999999999999997654433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.047 Score=54.69 Aligned_cols=115 Identities=7% Similarity=-0.127 Sum_probs=89.7
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 039706 636 AIDPDFLRVQVRAANCHLALGEI------EDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNK 709 (1166)
Q Consensus 636 eldP~~~~A~~~LA~lyl~lGd~------eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~ 709 (1166)
-+.|++++.|......+...|+. +.-+..|++|+..-|-.. ..........+..+....
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k------------~~~wrrYI~LWIrYA~~~--- 71 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK------------YGQNESFARIQVRFAELK--- 71 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG------------GTTCHHHHHHHHHHHHHH---
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc------------cccHHHHHHHHHHHHHHH---
Confidence 46899999999999999999999 899999999998766521 111222223333333332
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
..++.+.|.+.|+.++.+....+.+|...|..-.++|+...|...+.+++.+.|..
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 24789999999999999888889999999999999999999999999999988753
|
| >2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0014 Score=61.94 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=33.0
Q ss_pred CCceEEeeeeeeecccccccceeeceeeeee-eecceee
Q 039706 1119 GDIYSISFNLRIASNKRCYRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1119 G~~~~~~~~lsf~ea~~G~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
|.+..+.+.|+|+|+++|+++.|.+.+.+.| +|+|+|-
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~ 39 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGN 39 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCcc
Confidence 4677888999999999999999999988888 8877663
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.063 Score=53.79 Aligned_cols=105 Identities=12% Similarity=-0.035 Sum_probs=81.7
Q ss_pred HHhhhhHHHHHcCCh------HHHHHHHHHHHhcccc----CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 841 CRKSAGNEAFQAGRH------SEAVEHYTAALSCTVE----SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~y------eEAie~y~kALel~~e----~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
.|......+.+.|+. ++-++.|++|+..-|. .......+|...|.. ..+++.++|.+.|+.|+.+....
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF 93 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKF 93 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH
Confidence 333334444455666 7778899999886532 122345566666644 67899999999999999998889
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 911 LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 911 ~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+..|...|.--..+|+...|...+.+|+.+.|+..+
T Consensus 94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 999999999999999999999999999998877644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.3 Score=60.69 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=58.6
Q ss_pred HHHHcCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 617 TRMALGRMRDALS-DCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 617 ayl~lG~y~eAI~-~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
..+..+++++|.. .+.. -| +...+..++..+...|.+++|++..+. |.
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~~--------------------- 656 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISPD-----QD--------------------- 656 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-----HH---------------------
T ss_pred HHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCCC-----cc---------------------
Confidence 3456788888866 3310 11 011225666777778888877765421 00
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
..+..+ ...|+++.|++.... ..+...|..+|..++..++++.|+.+|.++
T Consensus 657 ----~~f~~~---l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 657 ----QKFELA---LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp ----HHHHHH---HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----hheehh---hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 001111 125777777765432 355678888888888888888888887765
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.67 E-value=2.2 Score=50.16 Aligned_cols=204 Identities=9% Similarity=0.001 Sum_probs=118.9
Q ss_pred CChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 622 GRMRDALSDCMLAVAI------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 622 G~y~eAI~~fekALel------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
+++++|++.+...-+. -+...++...+..++...++++...+++....+....... + +
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~-------a---------i 93 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL-------S---------I 93 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH-------H---------H
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH-------H---------H
Confidence 6677888766443322 1345788888999999999999888877654433221100 0 0
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISS-------YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P-------~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
......+..++......+.+.-+..++..-.... ....+...+|.+|...|+|.+|...+.....-.-..
T Consensus 94 ~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--- 170 (445)
T 4b4t_P 94 QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--- 170 (445)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS---
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---
Confidence 1111111112211111122222222211111111 123566789999999999999999998876432111
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc-chHHHHHHhhhhH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG-TVRELLCRKSAGN 847 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~-~~~~a~~l~~lG~ 847 (1166)
+.. ..++..+....++|+..+++.+|...+.++.. ....... ..-.+..+...|.
T Consensus 171 ----------~~~------~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~--------~~~~~~~~~~lk~~~~~~~~~ 226 (445)
T 4b4t_P 171 ----------MEM------SEKIQFILEQMELSILKGDYSQATVLSRKILK--------KTFKNPKYESLKLEYYNLLVK 226 (445)
T ss_dssp ----------SCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HHHHSSCCHHHHHHHHHHHHH
T ss_pred ----------ccH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hhcccCCcHHHHHHHHHHHHH
Confidence 111 11233345677889999999999999998621 0111111 1223455666789
Q ss_pred HHHHcCChHHHHHHHHHHHhc
Q 039706 848 EAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel 868 (1166)
.+...++|.+|..+|.+++..
T Consensus 227 ~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 227 ISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999999999864
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.088 Score=51.66 Aligned_cols=72 Identities=11% Similarity=-0.099 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 611 LSNRAATRMALGR---MRDALSDCMLAVAIDPD-FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 611 y~nrA~ayl~lG~---y~eAI~~fekALeldP~-~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
-++.|.++.+-.+ ..++|..++..++.+|. .-+.++.+|..++++|+|++|+.+.+.+|+..|++..+..+.
T Consensus 43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 4677888887764 45799999999999985 478999999999999999999999999999999986654443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.19 Score=55.05 Aligned_cols=131 Identities=13% Similarity=0.101 Sum_probs=88.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
..+++.|..++|+..+...|+.+|.+......+..+|.-.|+++.|.+-++.+.+++|+....-. .+..+-..+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~----~yr~lI~aE~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS----QLRHLVKAAQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH----HHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHH----HHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999998432111 11111111000
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
-...+. -+... .+-..|.........|......|+.++|...-.++++..|....
T Consensus 81 ------R~~vfa---G~~~P--------~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 81 ------RKDFAQ---GAATA--------KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ------HHHHTT---SCCCE--------ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ------HHHHHc---CCCCC--------CCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 000000 00000 00001222233445566677789999999999999999876544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.12 Score=50.83 Aligned_cols=80 Identities=9% Similarity=-0.020 Sum_probs=62.0
Q ss_pred HHHHhhhhHHHHHcCCh---HHHHHHHHHHHhccccCCc-hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 839 LLCRKSAGNEAFQAGRH---SEAVEHYTAALSCTVESHP-FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~y---eEAie~y~kALel~~e~~p-~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
....++.|+.+.+..+. .++|..++..+... | ..-.+++.+|..+.++|+|.+|+.+++.+|++.|++..|.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 34455667777777654 46888888888755 4 4678899999999999999999999999999999998887
Q ss_pred HHHHHHHH
Q 039706 915 SRRATLYE 922 (1166)
Q Consensus 915 ~~LA~ay~ 922 (1166)
..+..+-.
T Consensus 116 ~Lk~~Ie~ 123 (134)
T 3o48_A 116 ALKSMVED 123 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.16 Score=50.38 Aligned_cols=72 Identities=11% Similarity=-0.123 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHH
Q 039706 609 WRLSNRAATRMALGR---MRDALSDCMLAVAIDPD-FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQK 680 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~---y~eAI~~fekALeldP~-~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~ 680 (1166)
..-|+.|.++..-.+ ..++|..++..+...|. .-+.++.||..++++|+|++|+.+.+.+|+..|++..+..
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 334778888888765 45799999999999985 4678999999999999999999999999999999755443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.14 Score=50.76 Aligned_cols=79 Identities=9% Similarity=-0.025 Sum_probs=58.3
Q ss_pred HHHHhhhhHHHHHcCCh---HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRH---SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~y---eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
....++.|+.+.+..+- .++|.+++..+...+ ...-.++|.+|..++++|+|.+|..+++..|++.|++..|..
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~---~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC---STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34445567777776654 468888888887541 246678888999999999999999999999999998877766
Q ss_pred HHHHH
Q 039706 916 RRATL 920 (1166)
Q Consensus 916 ~LA~a 920 (1166)
.+..+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.74 Score=53.42 Aligned_cols=124 Identities=13% Similarity=-0.008 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc--C
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE--S 872 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e--~ 872 (1166)
..+|..|+..|+|.+|+..+.+... .+..+......++.+.....+|...+++.++...|++|...... .
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~--------~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLR--------ELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------HHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH--------HHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 4689999999999999999988633 22222233445667777788999999999999999999876421 1
Q ss_pred Cc-hhHHHHHHHHHHHH-HhhchhHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHhhC
Q 039706 873 HP-FAAICFCNRAAAYK-ALRHITDAIADCNLAIALD-----GNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 873 ~p-~~a~a~~nlA~ay~-~lGq~eeAi~~lekALeld-----P~~~~A~~~LA~ay~~lGd 926 (1166)
+| ..+.+...-|..++ ..++|.+|..+|-.++.-. |....++..++.+-+..++
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 22 34666777888899 8999999999999987543 2223344445555555555
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.17 Score=58.65 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=83.4
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-------Cc-----------hhHHHHHHHHHHHHHhhchhHHHHHHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES-------HP-----------FAAICFCNRAAAYKALRHITDAIADCN 901 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~-------~p-----------~~a~a~~nlA~ay~~lGq~eeAi~~le 901 (1166)
..+...|......++.++|+..|.+|+.+.... .+ ....+...++.++..+|++.+|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444555666789999999999999875210 00 011233456777889999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 902 LAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 902 kALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.++..+|-+-.+|..+-.+|...|+..+|+..|+++.+..-+.+.
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG 240 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999887655543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.5 Score=58.69 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYF 665 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~f 665 (1166)
+...+..+...|.+++|+...+ .... ...+++.+|++++|.+..
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~--------~~~~---~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISP--------DQDQ---KFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCC--------CHHH---HHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHheecCC--------Ccch---heehhhhcCCHHHHHHHH
Confidence 3444455556666666665442 1111 123345566666666654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.23 Score=62.27 Aligned_cols=61 Identities=10% Similarity=-0.018 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
..++...+..+...|+|+-|+...++|+.+.|.....|+.|+.+|..+|+|+.|+-.+.-+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4466667888889999999999999999999999999999999999999999999876654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.92 Score=53.48 Aligned_cols=103 Identities=10% Similarity=-0.064 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc-c--c
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT-V--E 871 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~-~--e 871 (1166)
..|+.+|...|++.+|...+..... ...........+..+......++..++|..|...++++.... . .
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~--------Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQV--------ETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--------HHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--------HHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 4567777777777777777776421 111122333445566666777777777777777777764211 1 1
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe 905 (1166)
........+...|..+...++|.+|-.+|..++.
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1112344555666677777777777777766654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.84 E-value=3 Score=42.48 Aligned_cols=200 Identities=13% Similarity=0.048 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
-.+|+.++-.-.- +.|..++..+.++..++-.|.|..|+-.+... | .. ..
T Consensus 15 Y~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l------N----------------T~-Ts---- 64 (242)
T 3kae_A 15 YRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHKL------N----------------TC-TS---- 64 (242)
T ss_dssp TTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHTC------C----------------BH-HH----
T ss_pred cccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHhc------c----------------hH-HH----
Confidence 4677766543322 34555577888999999999999988765321 1 01 11
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhc----CCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHH
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHES----GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAAL 866 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~----~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kAL 866 (1166)
.+.-+.+|..+.++..|+..++..+. .+|+..+....-+......-..+..+|..+.+.|+-+|||.+|....
T Consensus 65 ---~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 65 ---KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 23356789999999999999999874 23332222222222223334455667999999999999999999988
Q ss_pred hccccCCchhHHHHHH-------------HHHHHHHhhchhHHHH--------HHHHHHHhCCChHHHH-HHHHHHHHHh
Q 039706 867 SCTVESHPFAAICFCN-------------RAAAYKALRHITDAIA--------DCNLAIALDGNYLKAI-SRRATLYEMI 924 (1166)
Q Consensus 867 el~~e~~p~~a~a~~n-------------lA~ay~~lGq~eeAi~--------~lekALeldP~~~~A~-~~LA~ay~~l 924 (1166)
...+-..+..-.+|-| ++.--.+...+..... ..++-...-|.....+ ...|.-|..+
T Consensus 142 ~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~l 221 (242)
T 3kae_A 142 GKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNL 221 (242)
T ss_dssp HHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHT
T ss_pred CCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhc
Confidence 7662111111111111 0000000011111111 1112222234443322 3456778899
Q ss_pred hCHHHHHHHHHHHHHHhhh
Q 039706 925 RDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 925 GdyeeAi~~yekALeL~P~ 943 (1166)
|..++....|...-..+|.
T Consensus 222 g~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 222 GMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp TCHHHHHHHHHHHHHHSTT
T ss_pred ccchhHHHHHHHHHhcCCC
Confidence 9999999999998888775
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.85 Score=52.70 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH---HHHHH-HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 039706 645 QVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ---KIAVE-ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGV 720 (1166)
Q Consensus 645 ~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~---~~l~E-a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~ 720 (1166)
+...|......|+.+.|...+.+|+.+.......- ..+.. ....+... ...+....... ....|++.+|+..
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~--~~~a~~~~~~~--~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVED--KVLAHTAKAEA--EIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHH--HHHHHHHHHHH--HHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHH--HHHHHHHHHHH--HHHCCCHHHHHHH
Confidence 34445555567899999999999999754321110 00111 11111111 01111111111 2348999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 721 IDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 721 lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
+..++..+|.+..++..+..+|...|+..+|+..|+++...
T Consensus 194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.24 E-value=3.4 Score=54.41 Aligned_cols=54 Identities=9% Similarity=-0.052 Sum_probs=42.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
.+...++..+.++-|.. .+...|.++...+.+|.+|+..|++++|..+|+++-.
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 35556777788876644 4566788888889999999999999999999998753
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.26 E-value=6.1 Score=40.60 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=41.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
...+..|+++.|.+.++.. +....|.++|...+..|+++-|..+|+++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3456789999999988765 67789999999999999999999999875
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.45 E-value=11 Score=38.55 Aligned_cols=153 Identities=8% Similarity=-0.017 Sum_probs=93.1
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHH--h---------------CCCCHH-HHHHHHHHHHHcCChHHHHHHHH
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVA--I---------------DPDFLR-VQVRAANCHLALGEIEDASKYFR 666 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALe--l---------------dP~~~~-A~~~LA~lyl~lGd~eeAl~~fe 666 (1166)
..-..+.|..+.||..+.+|..|+..++..|+ . ||.+-+ .+..+|.++.+.|+.++|+.+|.
T Consensus 59 lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 59 LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 33345567789999999999999999999983 2 244444 45788999999999999999999
Q ss_pred HHHHcCCCchhHHHHHHHHHH-HhhhHHhH---------HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHH-
Q 039706 667 MCLQSGSDVCVDQKIAVEASD-GLQKAQKV---------SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLL- 735 (1166)
Q Consensus 667 kALel~P~n~~a~~~l~Ea~~-~L~k~~~~---------~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al- 735 (1166)
......|-.+....++.+-.. .-...+.+ .+.+.....+... ..+ ..+++-...-|.-....
T Consensus 139 ~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~--~s~-----~~ikkY~n~iPGiGSY~v 211 (242)
T 3kae_A 139 RSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHES--LSP-----SLVKKYMEHVPGIGSYFI 211 (242)
T ss_dssp HHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHH--CCH-----HHHHHHHTSTTTHHHHHH
T ss_pred hhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHh--ccH-----HHHHHHHHhCCCchhHHH
Confidence 999888764332222211000 00000000 0001100000000 000 22233333446554433
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 736 EMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 736 ~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
...|..|+.+|-.++...+|..+-..+|.
T Consensus 212 a~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 212 SNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 45678899999999999999999888874
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=23 Score=43.30 Aligned_cols=71 Identities=13% Similarity=0.008 Sum_probs=45.7
Q ss_pred HHHHHHHHhchHHHHH----HHHHHHH-HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 597 AETIAAQEACEKWRLS----NRAATRM-ALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 597 a~~~aAIe~~e~~ay~----nrA~ayl-~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
..+...|...+.|... ++...++ ..+++..-+..+.. .|......+..+.++...|+-.+|.....++-..
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 3555555555554432 2232222 35677766665543 3788888899999999999988888877766553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.42 Score=59.86 Aligned_cols=61 Identities=18% Similarity=0.089 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
...+...|..++..|+|+-|+.+.++|+..-|.....|+.||.||..+|+|+.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456778999999999999999999999999999999999999999999999999887765
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.17 E-value=1.8 Score=47.45 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=53.5
Q ss_pred hcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 709 KTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 709 ~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
...+..++|++.+...++..|.+...+..+.++|+-.|+|+.|...++.+.+++|..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 357999999999999999999999999999999999999999999999999998853
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.62 E-value=7 Score=46.66 Aligned_cols=78 Identities=12% Similarity=-0.073 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
.+..+|........+..|..+|.+|+.+.|++..+|.+||.++...|+.-+|+-+|.+++......+.++..+..+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 366789998889999999999999999999999999999999999999999999999999865555555555544443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.69 E-value=2.8 Score=50.05 Aligned_cols=195 Identities=13% Similarity=0.012 Sum_probs=81.2
Q ss_pred cCCCHHHHHHHHHHHH-----------HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 710 TSNDAEIALGVIDEAL-----------FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 710 ~~gd~eeALe~lekAL-----------el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
..+++++|..+-..++ .+++-...+|+.++.++..+|+....+........+.+....+ .+...++.
T Consensus 148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~--~rta~lr~ 225 (523)
T 4b4t_S 148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKF--LKIASLKH 225 (523)
T ss_dssp -------------------------------------------------------CHHHHHHHHTHHHHH--HHHCCSCS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHH--HHHHhccc
Confidence 4567777776655443 1234456777777777877777665433222222211110000 00111222
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
|....+ -.+.++-+.|...+.+++|..+..++..... ...+...+..++.+|.++.-.++|.+|
T Consensus 226 D~~~qa-------~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~---------~~sn~q~~rY~YY~GRI~a~q~~Y~eA 289 (523)
T 4b4t_S 226 DNETKA-------MLINLILRDFLNNGEVDSASDFISKLEYPHT---------DVSSSLEARYFFYLSKINAIQLDYSTA 289 (523)
T ss_dssp SSCHHH-------HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTT---------TSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcchhH-------HHHHHHHHHHHccCcHHHHHHHHhcCcCCcc---------cCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 322111 1235577889999999999999999732211 112234466677789999999999999
Q ss_pred HHHHHHHHhccccCCc---hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhhCHHH
Q 039706 859 VEHYTAALSCTVESHP---FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 859 ie~y~kALel~~e~~p---~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA~ay~~lGdyee 929 (1166)
.+++..|+...+.... ....++-.+-.+-+-+|++.+--- | ..+.. ...|..++.++ +.|+..+
T Consensus 290 ~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~l-f-----~q~~l~~~L~pY~~Lv~Av-r~GdL~~ 359 (523)
T 4b4t_S 290 NEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSF-F-----HQSNMQKSLLPYYHLTKAV-KLGDLKK 359 (523)
T ss_dssp HHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHH-H-----TTTSCHHHHHHHHHHHHHH-HHTCHHH
T ss_pred HHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHH-h-----hchhHHHHHHHHHHHHHHH-HcCCHHH
Confidence 9999999987642211 123343334444445677554111 1 12222 23467777775 5576543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.20 E-value=36 Score=41.62 Aligned_cols=124 Identities=10% Similarity=-0.108 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
.+..|...+..|++..+...... +.-.|- ..|.....+...++.... ..+...|...|+.+....+-.
T Consensus 9 ~~~~a~~a~~~~~~~~~~~l~~~-l~~~pL--~~yl~y~~l~~~l~~~~~--~ev~~Fl~~~~~~p~~~~Lr~------- 76 (618)
T 1qsa_A 9 RYAQIKQAWDNRQMDVVEQMMPG-LKDYPL--YPYLEYRQITDDLMNQPA--VTVTNFVRANPTLPPARTLQS------- 76 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGG-GTTSTT--HHHHHHHHHHHTGGGCCH--HHHHHHHHHCTTCHHHHHHHH-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-hcCCCc--HHHHHHHHHHhCcccCCH--HHHHHHHHHCCCChhHHHHHH-------
Confidence 45567778888888776655433 222333 344444444444432111 134444555666443222111
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~ 762 (1166)
.....+. ..++|..-+..+.. .|.+.......+.++...|+-.+|......+....
T Consensus 77 ----------~~l~~l~--~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 77 ----------RFVNELA--RREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp ----------HHHHHHH--HTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred ----------HHHHHHH--hCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 1111111 25677776665543 37888889999999999999888888777766443
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.61 E-value=2 Score=51.37 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=71.7
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
.+..+|++..-...+..|..+|.+|+.+. |.....|+.+|.+....|+.-+|+-+|-++|....-++.+..++..+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~----P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV----PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC----CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 45567999998999999999999999999 99999999999999999999999999999998877788888888888
Q ss_pred HHHh
Q 039706 921 YEMI 924 (1166)
Q Consensus 921 y~~l 924 (1166)
+...
T Consensus 230 f~~~ 233 (497)
T 1ya0_A 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.45 E-value=11 Score=42.26 Aligned_cols=27 Identities=7% Similarity=-0.299 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 909 NYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 909 ~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
.++..+..+|..|...+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 467888888999988888888888774
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.32 E-value=8.8 Score=39.43 Aligned_cols=43 Identities=7% Similarity=-0.032 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
.|+++.|++..+.+ ++...|..+|...+..|+++-|+.+|+++
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 56677776665543 45566777777777777777777776654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.27 E-value=2.2 Score=49.83 Aligned_cols=99 Identities=11% Similarity=-0.042 Sum_probs=77.5
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC--Ch----HHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG--NY----LKAI 914 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP--~~----~~A~ 914 (1166)
.+..+|..|+..|++++|+++|.++...... ......++..+..++...++|..|..++.++..+.. .+ ....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556799999999999999999999875422 244567888888899999999999999999976631 12 2334
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
...|.++...++|.+|...|-.++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 45677788899999999999887654
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.50 E-value=1.8 Score=51.67 Aligned_cols=139 Identities=8% Similarity=-0.029 Sum_probs=51.9
Q ss_pred HHHHcCChHHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 617 TRMALGRMRDALSDCMLAV-----------AIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekAL-----------eldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
.++..++|++|..+...++ .+|+-.+++|+..+.++..+|+.............+.|. +..+
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~-------Ll~~ 217 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRST-------MMKF 217 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTH-------HHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHH-------HHHH
Confidence 4556788999988877665 135566788998888888888877654332222221111 0000
Q ss_pred HH--Hhh-hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh-------HHHHHHHHHHHHHccCHHHHHHHH
Q 039706 686 SD--GLQ-KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS-------EKLLEMKAEALFMLRKYEEVIQLC 755 (1166)
Q Consensus 686 ~~--~L~-k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~-------~~al~~lA~~y~~lGdyeeAi~~l 755 (1166)
+. .+. ........+..+.+.+ ...+.|++|..++.++. .|.. ..+++.+|.++...++|.+|.+++
T Consensus 218 ~rta~lr~D~~~qa~l~nllLRnY--L~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L 293 (523)
T 4b4t_S 218 LKIASLKHDNETKAMLINLILRDF--LNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYI 293 (523)
T ss_dssp HHHCCSCSSSCHHHHHHHHHHHHH--HHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcccCcchhHHHHHHHHHHH--HccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 00 000 0000112223322222 23688999999999884 3321 466788999999999999999999
Q ss_pred HHHHHhccCCC
Q 039706 756 EQTFHFAEKNS 766 (1166)
Q Consensus 756 ekALel~p~n~ 766 (1166)
..|+...|...
T Consensus 294 ~~A~rkap~~~ 304 (523)
T 4b4t_S 294 IAAIRKAPHNS 304 (523)
T ss_dssp HHHTSSCSCSS
T ss_pred HHHHHhCCcch
Confidence 99998887654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.94 E-value=20 Score=40.52 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHH
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDF 934 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~y 934 (1166)
-.+++.+..+|.+|.+.+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 357888999999999999999998887
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.88 E-value=11 Score=49.62 Aligned_cols=132 Identities=8% Similarity=-0.092 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCC-CCch----hhhhhhh----ccchHHHHHHhhhhHHHHHcCChHHHHHHHHH
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGN-GGKM----LESLIPL----AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTA 864 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~-~~k~----le~a~~L----~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~k 864 (1166)
.+.+|.+|+..|++++|..+|+++...- .... ......+ .........|......+.+.+.++.+++..+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3679999999999999999999963311 1100 0000000 00111233455566777888999999999999
Q ss_pred HHhccccCCch-hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 865 ALSCTVESHPF-AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 865 ALel~~e~~p~-~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
||+......+. ....|.++=..+..+++|++|...+...=. .......+..+-..+...+.
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCC
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCC
Confidence 99865332222 334788888899999999999877743321 11223444444444444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1166 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-13 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-07 | |
| d1nz6a_ | 98 | a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T | 4e-11 | |
| d1wjza_ | 94 | a.2.3.1 (A:) CSL-type zinc finger-containing prote | 7e-11 | |
| d1fpoa1 | 76 | a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma | 7e-11 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 8e-09 | |
| d1xbla_ | 75 | a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain | 2e-08 | |
| d1fafa_ | 79 | a.2.3.1 (A:) Large T antigen, the N-terminal J dom | 2e-08 | |
| d1hdja_ | 77 | a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9 | 3e-08 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-07 | |
| d1iura_ | 88 | a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human | 4e-07 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 9e-07 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 8e-04 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-06 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.001 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-05 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 7e-05 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 1e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 9e-04 | |
| d1gh6a_ | 114 | a.2.3.1 (A:) Large T antigen, the N-terminal J dom | 4e-04 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 5e-04 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 0.003 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 8e-04 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 9e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.001 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.6 bits (174), Expect = 1e-13
Identities = 52/374 (13%), Positives = 100/374 (26%), Gaps = 52/374 (13%)
Query: 588 IKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVR 647
+QEP+ L ++ R+ + LA+ +P
Sbjct: 26 WRQEPDNTGV-------------LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72
Query: 648 AANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL-- 705
N + G++++A +++R L+ D A + + + Q
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 706 ----------LQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLC 755
K E A +A+ + I
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 756 EQTFHFAEKNSPPLDANGQSM----ELDSSESTKHVSFRLWRCCLIF-----KSYFTLGR 806
E+ G + D + + + L + Y+ G
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252
Query: 807 LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAAL 866
++ AI R I L + C N + G +EA + Y AL
Sbjct: 253 IDLAIDTYRR------------AIELQPHFPDAYCNL--ANALKEKGSVAEAEDCYNTAL 298
Query: 867 SCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926
P A N A + +I +A+ A+ + + A S A++ +
Sbjct: 299 RL----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Query: 927 YDHAASDFHRLIAL 940
A + I +
Sbjct: 355 LQEALMHYKEAIRI 368
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (150), Expect = 1e-10
Identities = 47/351 (13%), Positives = 95/351 (27%), Gaps = 39/351 (11%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
A G A CM +PD V + ++ H ++ ++ + + ++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 671 SGSD------------VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIAL 718
Q K + D E A+
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 719 GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778
AL + + L L + EE + + G
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 779 --DSSESTKHVSFRLWRCCLIFKSYFTLG-------RLEEAIAALERHESGNGGKMLESL 829
+ + H + +Y LG + A+AA R S +
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA---- 237
Query: 830 IPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA 889
+ + ++ G A++ Y A+ E P +CN A A K
Sbjct: 238 ----------VVHGNLACVYYEQGLIDLAIDTYRRAI----ELQPHFPDAYCNLANALKE 283
Query: 890 LRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ +A N A+ L + +++ A + + + A + + + +
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 3e-07
Identities = 31/243 (12%), Positives = 65/243 (26%), Gaps = 9/243 (3%)
Query: 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770
+ D E A + + +L + + F R+ + +
Sbjct: 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71
Query: 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLI 830
G + +R + G M ++
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL---------AAALVAAGDMEGAVQ 122
Query: 831 PLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL 890
++ ++ + +E A +E+ P A+ + N + A
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQ 950
I AI A+ LD N+L A + + R +D A + + R ++L
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 951 SGV 953
Sbjct: 243 LAC 245
|
| >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Auxilin J-domain species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.4 bits (141), Expect = 4e-11
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 22/105 (20%)
Query: 962 NDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSL 1021
++R + V + +G+ V+ +K+ YRKA L HPDK
Sbjct: 16 RNIRALLSTMHTVLWAGE-----TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDK----- 65
Query: 1022 VRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRY 1066
+ + +F + +A++ + ++ Y
Sbjct: 66 ----ATGQPYEQYA--------KMIFMELNDAWSEFENQGQKPLY 98
|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.8 bits (139), Expect = 7e-11
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 977 EARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIG 1036
+ + D Y ILG + S +++D+K+ Y+K L +HPDK D +
Sbjct: 9 ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDK---------QSAD-----VP 54
Query: 1037 AEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLE 1069
A ++ + F I +A+ +L + + +YDL+
Sbjct: 55 AGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ 87
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Score = 57.0 bits (137), Expect = 7e-11
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 17/88 (19%)
Query: 984 LDMYLILGVESSVSV--ADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHK 1041
+D + + G+ + + + ++ ++HPDK +
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDK---------------FASGSQAEQL 45
Query: 1042 DAEKLFKMIAEAYAVLSDPSKRSRYDLE 1069
A + I +A+ L P R+ Y L
Sbjct: 46 AAVQQSATINQAWQTLRHPLMRAEYLLS 73
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.6 bits (130), Expect = 8e-09
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN F ++ EA Y A+ +P A+ + NRA Y ++ A+ADC
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAI----TRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLAN 962
A+ LDG +KA + YD A ++ R + K + D ++ +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY-----SLAKEQRLNFGD---DIPS 115
Query: 963 DLRQARMRLTAVEEEARKDIPLD 985
LR A+ + EE R +
Sbjct: 116 ALRIAKKKRWNSIEERRIHQESE 138
|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: DnaJ chaperone, N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Score = 50.0 bits (119), Expect = 2e-08
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV + +I++ Y++ A+++HPD+ N D E
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR---------NQGDKEA-----------E 43
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
FK I EAY VL+D KR+ YD
Sbjct: 44 AKFKEIKEAYEVLTDSQKRAAYD 66
|
| >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Murine polyomavirus [TaxId: 10634]
Score = 50.0 bits (119), Expect = 2e-08
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 26/86 (30%)
Query: 985 DMYLILGVE--SSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKD 1042
+ +L + +++ Y++ +L HPDK G
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG------------------------ 47
Query: 1043 AEKLFKMIAEAYAVLSDPSKRSRYDL 1068
+ L + + + R +L
Sbjct: 48 SHALMQELNSLWGTFKTEVYNLRMNL 73
|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSP40 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (118), Expect = 3e-08
Identities = 34/83 (40%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y LG+ S +IKR YR+ ALR+HPDK AE
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDK---------------------NKEPGAE 42
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK IAEAY VLSDP KR +D
Sbjct: 43 EKFKEIAEAYDVLSDPRKREIFD 65
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 49.2 bits (116), Expect = 3e-07
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVES-----------HPFAAICFCNRAAAYKALR 891
K G F+ G++ +AV Y +S F F N A Y LR
Sbjct: 19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 78
Query: 892 HITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
T A+ C+ A+ LD K + RR ++ +++ A DF +++ +
Sbjct: 79 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127
|
| >d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Hypothetical protein KIAA0730 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (110), Expect = 4e-07
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 19/96 (19%)
Query: 979 RKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAE 1038
R I ++ ++ + ++ K+ R+ L+ HPD E
Sbjct: 11 RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPD-------------------KNPE 51
Query: 1039 VHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEETRN 1074
H A ++FK + L + + R
Sbjct: 52 NHDIANEVFKHLQNEINRLEKQAFLDQNADRASRRT 87
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (110), Expect = 9e-07
Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 25/142 (17%)
Query: 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896
++ L K GN+A++ A++HY A E P N+AA Y
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKA----KELDPTNMTYITNQAAVYFEKGDYNKC 57
Query: 897 IADCNLAIALD-------GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSN 949
C AI + KA +R Y Y A +++ +A
Sbjct: 58 RELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------- 108
Query: 950 QSGVSDRSINLANDLRQARMRL 971
R+ ++ +QA L
Sbjct: 109 -----HRTPDVLKKCQQAEKIL 125
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 44/309 (14%), Positives = 79/309 (25%), Gaps = 18/309 (5%)
Query: 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672
R+ G + +A+ AV DP + + A R CL+
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE 732
D + ++ E ++ + G L S
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 733 KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK----NSPPLDANGQSMELDSSESTKHVS 788
L + L + + ++L + + L + +
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 789 FRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848
+ + + EEA+AA R + S L + L
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINL--------- 253
Query: 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG 908
G H EAVEH+ AL+ +S + LR + + A D
Sbjct: 254 ----GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 309
Query: 909 NYLKAISRR 917
L +
Sbjct: 310 RDLSTLLTM 318
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 8e-04
Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 4/95 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G Q G AV + AA+ + P + AI+ +
Sbjct: 26 GLRRLQEGDLPNAVLLFEAAV----QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 81
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
L + A+ A + A +
Sbjct: 82 LKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 116
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 2e-06
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G A A++ ++A P + ICF N Y L+++T+A +I
Sbjct: 12 GVLAADKKDWKGALDAFSAVQD------PHSRICF-NIGCMYTILKNMTEAEKAFTRSIN 64
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941
D + A +R LY YD A D + L
Sbjct: 65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 100
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.0 bits (110), Expect = 2e-06
Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 25/150 (16%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAA------------LSCTVESHPFAAICFCNRAAAYKAL 890
K+ GN F++ A++ YT + + P A C N A +
Sbjct: 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 90
Query: 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQ 950
A+ C A+ +D + KA+ RRA ++ +++YD A +D + +I ++
Sbjct: 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ-----EIAPEDK 145
Query: 951 SGVSDRSINLANDLRQARMRLTAVEEEARK 980
+ +L + + ++ A +++ +
Sbjct: 146 --------AIQAELLKVKQKIKAQKDKEKA 167
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 47.3 bits (112), Expect = 4e-06
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
A G+ +A+E A+ ++ P A + A +I
Sbjct: 3 WKNALSEGQLQQALELLIEAI----KASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941
L YL S+ L + + A L
Sbjct: 59 LFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLG 94
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 45.4 bits (107), Expect = 2e-05
Identities = 28/180 (15%), Positives = 52/180 (28%), Gaps = 27/180 (15%)
Query: 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSE 857
+K+ + G+L++A+ L P ++R G
Sbjct: 3 WKNALSEGQLQQALELLIE---------AIKASPKDASLRSSF-----IELLCIDGDFER 48
Query: 858 AVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG-NYLKAISR 916
A E ++ + P KA + D A L L
Sbjct: 49 ADEQLMQSI----KLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV 104
Query: 917 RATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEE 976
L + +DY+ + ++ L ++ +N + S D+R RL E
Sbjct: 105 SFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFS--------DVRDIDDRLGGYIE 156
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 39.6 bits (92), Expect = 0.001
Identities = 8/52 (15%), Positives = 21/52 (40%)
Query: 619 MALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
++ G+++ AL + A+ P ++ G+ E A + ++
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ N+ F+A + A++ Y+ +E +P AI + NR+ AY A+ D
Sbjct: 14 KTQANDYFKAKDYENAIKFYS----QAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
AI LD Y+K RRA + + A D+ ++ +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 107
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 3e-05
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN+A G +A++ Y+ A+ P + + NR+AAY A D
Sbjct: 7 KEKGNKALSVGNIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ L ++ K SR+A E + ++ A + +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 41.9 bits (97), Expect = 7e-05
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 12/110 (10%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSC------------TVESHPFAAICFCNRAAAYKAL 890
K GNE F+ +EA+ Y AL + C N A Y
Sbjct: 21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 80
Query: 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ AI + + +D N +KA+ + + A + ++ +L
Sbjct: 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.8 bits (97), Expect = 1e-04
Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 33/183 (18%)
Query: 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD 895
+ + K+AG A AGR +A H +AAL P L + D
Sbjct: 8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALRE--WRGP--------------VLDDLRD 51
Query: 896 AIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE-KSNQSGVS 954
A AL + + A + +A ++ L + +
Sbjct: 52 FQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAY 111
Query: 955 DRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHP 1014
S ++ L R T + ++ LG++ ++ LR P
Sbjct: 112 YLSDRQSDALGAYRRVKTTLADD------------LGIDPG---PTLRALNE-RILRQQP 155
Query: 1015 DKA 1017
A
Sbjct: 156 LDA 158
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 26/244 (10%), Positives = 59/244 (24%), Gaps = 32/244 (13%)
Query: 715 EIALGVIDEALFISSYSE----KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770
E+ L +++ L + ++ +LL + L Q +
Sbjct: 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN 75
Query: 771 ANG---------QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER----- 816
G + + + + + GR + A L
Sbjct: 76 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 135
Query: 817 -------------HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYT 863
+ + + E L + + +E
Sbjct: 136 PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK 195
Query: 864 AALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD-GNYLKAISRRATLYE 922
A + + Y +L + A A LA+A + N+++ L
Sbjct: 196 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 255
Query: 923 MIRD 926
+ +D
Sbjct: 256 LGQD 259
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 9e-04
Identities = 40/235 (17%), Positives = 68/235 (28%), Gaps = 15/235 (6%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWR----LSNRAATRMALGRMRDALSDCMLAVAIDPDF 641
++QE LA E I A A L R +LG A +D A+AI PD
Sbjct: 11 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 70
Query: 642 LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQR 701
V G + A + F L+ A + + + +
Sbjct: 71 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 130
Query: 702 SAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761
Q N + L A + +K ++ + +
Sbjct: 131 FYQDDPNDPFRSLWLYL-----AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 185
Query: 762 AEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816
+E+ + +E +F L + Y +LG L+ A A +
Sbjct: 186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKY------YLSLGDLDSATALFKL 234
|
| >d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Simian virus 40, Sv40 [TaxId: 10633]
Score = 39.0 bits (90), Expect = 4e-04
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 26/99 (26%)
Query: 985 DMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKD 1042
+ +LG+E S ++ +++ Y K HPD
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD------------------------KGG 44
Query: 1043 AEKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNG 1081
E+ K + Y + D K + + +
Sbjct: 45 DEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTY 83
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSC-----------TVESHPFAAICFCNRAAAYKALR 891
K G F+ G++ +A+ Y +S ++ N A + L+
Sbjct: 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 76
Query: 892 HITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
+ AI CN A+ LD N K +SRR + + D++ A +DF +++ L
Sbjct: 77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.003
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 4/149 (2%)
Query: 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860
YF G+ ++A+ ++ S ES + R ++ +A
Sbjct: 23 YFKEGKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 79
Query: 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920
+ + +E R A+ A+ A AD + L N A ++ A
Sbjct: 80 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 139
Query: 921 YEMIRDYDHA-ASDFHRLIALLTKQIEKS 948
+ IR + + L ++ K+
Sbjct: 140 QQRIRRQLAREKKLYANMFERLAEEENKA 168
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 39.0 bits (89), Expect = 8e-04
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALS--------CTVESHPFAAICFCNRAAAYKALRHIT 894
S AG + EA + A+ + F A C A A LR
Sbjct: 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 72
Query: 895 DAIADCN 901
+A+ +
Sbjct: 73 EALHSAD 79
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 9e-04
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 9/92 (9%)
Query: 871 ESHPFAAIC--------FCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS-RRATLY 921
+P I + A + A AI L+ RR L
Sbjct: 29 GPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK 88
Query: 922 EMIRDYDHAASDFHRLIALLTKQIEKSNQSGV 953
+ +D + +I K + + V
Sbjct: 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 120
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 0.001
Identities = 37/349 (10%), Positives = 79/349 (22%), Gaps = 82/349 (23%)
Query: 634 AVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQ 693
A + D ++ A + ++D ++ L + + +D+K VE +
Sbjct: 12 AEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKK--VEQDLWNHAFK 66
Query: 694 KVSECMQRSAQLLQNKTSNDAEIAL-GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVI 752
+Q A+ N ++ + L ++ A Y +++
Sbjct: 67 NQITTLQGQAKNRANPNRSEVQANLSLFLEAAS--------------------GFYTQLL 106
Query: 753 QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIA 812
Q F+ G +
Sbjct: 107 QELCTVFNVDLPCRVKSSQLGII-------------------------SNKQTHTSAIVK 141
Query: 813 ALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872
S L L G+ A + S+A +Y A +
Sbjct: 142 PQSSSCSYICQHCLVHL----------------GDIARYRNQTSQAESYYRHAA----QL 181
Query: 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAAS 932
P + A + I +IA+ + A + +
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241
Query: 933 D----------FHRLIALLTKQIEKSNQSGVSDRSIN-LANDLRQARMR 970
F + + S + ++ L Q
Sbjct: 242 TKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFN 290
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (90), Expect = 0.002
Identities = 34/299 (11%), Positives = 76/299 (25%), Gaps = 33/299 (11%)
Query: 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAID------P 639
+++ P I A S G + +L+ +
Sbjct: 37 LALEELPPGWFYSRIVA--------TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 88
Query: 640 DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV--------EASDGLQK 691
L ++ + A G ++ A + Q ++ ++Q + +
Sbjct: 89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 148
Query: 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEV 751
+ + ++L + L ++ + + +L +
Sbjct: 149 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 208
Query: 752 IQLCEQTFHF---AEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLE 808
+ + A + + + F + I ++ LG E
Sbjct: 209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 268
Query: 809 EAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867
A LE + E+ L +QAGR S+A AL
Sbjct: 269 PAEIVLEE--------LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1166 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.87 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.83 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.79 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.77 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.77 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.76 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.73 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.69 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.66 | |
| d1xbla_ | 75 | DnaJ chaperone, N-terminal (J) domain {Escherichia | 99.56 | |
| d1wjza_ | 94 | CSL-type zinc finger-containing protein 3 (J-domai | 99.5 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.47 | |
| d1hdja_ | 77 | HSP40 {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.44 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.41 | |
| d1gh6a_ | 114 | Large T antigen, the N-terminal J domain {Simian v | 99.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.37 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.34 | |
| d1fpoa1 | 76 | HSC20 (HSCB), N-terminal (J) domain {Escherichia c | 99.33 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.33 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.32 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.26 | |
| d1fafa_ | 79 | Large T antigen, the N-terminal J domain {Murine p | 99.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.23 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.19 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.18 | |
| d1nz6a_ | 98 | Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | 99.17 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.16 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.15 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.11 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.1 | |
| d1iura_ | 88 | Hypothetical protein KIAA0730 {Human (Homo sapiens | 99.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.06 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.05 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.01 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.92 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.87 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.58 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.44 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.24 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.16 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.41 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.31 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.73 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.96 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 93.63 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.39 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 85.16 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 82.51 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.9e-28 Score=270.31 Aligned_cols=315 Identities=14% Similarity=0.082 Sum_probs=256.4
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
.++.|+..+.+.++.+|++. .+++.+|.+|+.+|+|++|+..|+++++++|+++.+|..+|.+|..+
T Consensus 14 ~~~~A~~~~~~~l~~~p~~~-------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 14 DFEAAERHCMQLWRQEPDNT-------------GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Confidence 34666777777777766654 34566999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh----------------------------------H------
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK----------------------------------V------ 695 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~----------------------------------~------ 695 (1166)
|++++|+..+..++...|..................... .
T Consensus 81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence 999999999999999988764433222211111100000 0
Q ss_pred --------HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 696 --------SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 696 --------~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
...+... .......+++++|+..++++++++|.+..++..+|.++...|++++|+..+++++.+.+...
T Consensus 161 ~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~- 237 (388)
T d1w3ba_ 161 AIETQPNFAVAWSNL--GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA- 237 (388)
T ss_dssp HHHHCTTCHHHHHHH--HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH-
T ss_pred hhccCcchhHHHHhh--cccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH-
Confidence 0011111 11133578888999999999999998888899999999999999999999988888766432
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
..+..+|.+|...|++++|+..|++++...+. ....+..+|.
T Consensus 238 ------------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--------------~~~~~~~l~~ 279 (388)
T d1w3ba_ 238 ------------------------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--------------FPDAYCNLAN 279 (388)
T ss_dssp ------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--------------CHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHH
Confidence 12456899999999999999999998654443 3556778899
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
++...|++.+|+..|+.++... |....++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+|..+|++
T Consensus 280 ~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 355 (388)
T d1w3ba_ 280 ALKEKGSVAEAEDCYNTALRLC----PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHcCCHHHHHHHHHhhhccC----CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999987 888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHhh
Q 039706 928 DHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~~ 948 (1166)
++|+..|+++++++|++.+.+
T Consensus 356 ~~A~~~~~~al~l~P~~~~a~ 376 (388)
T d1w3ba_ 356 QEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp HHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999987755
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2e-26 Score=256.32 Aligned_cols=294 Identities=13% Similarity=0.089 Sum_probs=256.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
+.+|..++..|+|++|+..|+++++.+|++..+++.+|.+|..+|++++|+.+|+++++++|++...+..+..++..+++
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 45799999999999999999999999999999999999999999999999999999999999998888888888777776
Q ss_pred HHhHHHHHHHHHHH----------------------------------------------HHhhcCCCHHHHHHHHHHHH
Q 039706 692 AQKVSECMQRSAQL----------------------------------------------LQNKTSNDAEIALGVIDEAL 725 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~----------------------------------------------l~~~~~gd~eeALe~lekAL 725 (1166)
...+...+..+... ......+....++..+.+.+
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 66655443332111 00123566778888899999
Q ss_pred HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcC
Q 039706 726 FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLG 805 (1166)
Q Consensus 726 el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lG 805 (1166)
...|....++..+|.++...+++++|+..+++++.++|++.. .+..+|.++...|
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------------------~~~~l~~~~~~~~ 217 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD-------------------------AYINLGNVLKEAR 217 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH-------------------------HHHHHHHHHHTTT
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHH-------------------------HHHHHhhhhhccc
Confidence 999999999999999999999999999999999999886532 2456899999999
Q ss_pred CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHH
Q 039706 806 RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAA 885 (1166)
Q Consensus 806 d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ 885 (1166)
++++|+..++++.... +.....+..+|.++...|++++|+..|+++++++ |.++.+|.++|.
T Consensus 218 ~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~ 279 (388)
T d1w3ba_ 218 IFDRAVAAYLRALSLS--------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ----PHFPDAYCNLAN 279 (388)
T ss_dssp CTTHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----SSCHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHh--------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHH
Confidence 9999999999864322 2335566778999999999999999999999988 888999999999
Q ss_pred HHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 886 AYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 886 ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
++..+|++.+|+..+++++...|....++..+|.+|..+|++++|+..|++++++.|++...+
T Consensus 280 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T d1w3ba_ 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999988875543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.5e-24 Score=237.17 Aligned_cols=260 Identities=15% Similarity=0.094 Sum_probs=203.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
.+++|..++..|++++|+..|+++|+.+|+++.+|+.+|.+|..+|++++|+.+|.++++++|+
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------------- 85 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD---------------- 85 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc----------------
Confidence 3678999999999999999999999999999999999999999999999999999887776655
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
+..++..+|.+|..+|++++|+..+++++.+.|.....+.
T Consensus 86 ----------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 125 (323)
T d1fcha_ 86 ----------------------------------------NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 125 (323)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred ----------------------------------------cccccccccccccccccccccccchhhHHHhccchHHHHH
Confidence 4455667777888888888888888888887776533211
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
....... .............+...+.+.+|+..|.+++...+. ...+..+..+|.++.
T Consensus 126 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~------------~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 126 PAEEGAG----------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT------------SIDPDVQCGLGVLFN 183 (323)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT------------SCCHHHHHHHHHHHH
T ss_pred hhhhhhh----------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc------------ccccccchhhHHHHH
Confidence 1100000 000000111223445667788899999887543332 223556778899999
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
..|++++|+..|++++.++ |..+.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|
T Consensus 184 ~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVR----PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhhhhcccccccccc----cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988 888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHhhccCC
Q 039706 931 ASDFHRLIALLTKQIEKSNQSG 952 (1166)
Q Consensus 931 i~~yekALeL~P~~~e~~~~~~ 952 (1166)
+..|++|+++.|++.......+
T Consensus 260 ~~~~~~al~l~p~~~~~~~~~~ 281 (323)
T d1fcha_ 260 VEHFLEALNMQRKSRGPRGEGG 281 (323)
T ss_dssp HHHHHHHHHHHHTC------CC
T ss_pred HHHHHHHHHhCCcChhhhhhhH
Confidence 9999999999999877654433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.1e-21 Score=210.81 Aligned_cols=250 Identities=15% Similarity=0.064 Sum_probs=175.9
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
.++.|+..+.++++.+|+++. +|+++|.+|..+|++++|+..|.++++++|++..+|+.+|.+|..+
T Consensus 34 ~~~~A~~~~~~al~~~P~~~~-------------a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 34 DLPNAVLLFEAAVQQDPKHME-------------AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 100 (323)
T ss_dssp CHHHHHHHHHHHHHSCTTCHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCHH-------------HHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc
Confidence 456677777777777776544 4566999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHH
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLL 735 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al 735 (1166)
|++++|+..|++++.+.|............... ......
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~ 139 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG-----------------------------------------AGLGPS 139 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC-------------------------------------------------------
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhhh-----------------------------------------cccccc
Confidence 999999999999999998753221110000000 000000
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 039706 736 EMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALE 815 (1166)
Q Consensus 736 ~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~le 815 (1166)
......+...+.+.+|+..+.+++.++|....+ +.+..+|.++...|++++|+..|+
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~-----------------------~~~~~l~~~~~~~~~~~~A~~~~~ 196 (323)
T d1fcha_ 140 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP-----------------------DVQCGLGVLFNLSGEYDKAVDCFT 196 (323)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH-----------------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHhhccccc-----------------------ccchhhHHHHHHHHHHhhhhcccc
Confidence 011122334455566666666666666543221 123446666777777777777777
Q ss_pred HHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH
Q 039706 816 RHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD 895 (1166)
Q Consensus 816 kAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee 895 (1166)
+++... +.....+..+|.++...|++++|+.+|+++++++ |.++.+|+++|.+|..+|++++
T Consensus 197 ~al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 197 AALSVR--------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ----PGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHH
T ss_pred cccccc--------------cccccchhhhhhcccccccchhHHHHHHHHHHHh----hccHHHHHHHHHHHHHCCCHHH
Confidence 653322 2234556677999999999999999999999988 8889999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 896 AIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 896 Ai~~lekALeldP~~~~A~~~LA~a 920 (1166)
|+..|++||+++|++..++..++.+
T Consensus 259 A~~~~~~al~l~p~~~~~~~~~~~~ 283 (323)
T d1fcha_ 259 AVEHFLEALNMQRKSRGPRGEGGAM 283 (323)
T ss_dssp HHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHhCCcChhhhhhhHHH
Confidence 9999999999999887765544433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.3e-18 Score=187.78 Aligned_cols=293 Identities=14% Similarity=0.018 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF-----LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~-----~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
+.++..+|.+++..|++++|+..|+++|.+.|.+ ..++..+|.+|..+|++++|+..|++++.+.+.......
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-- 89 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY-- 89 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH--
Confidence 3445568999999999999999999999999986 458899999999999999999999999986543211110
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 683 VEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS--------YSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 683 ~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P--------~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
....+.. ....+...+++..|+..+.+++.+.+ ....++..+|.++..+|+++.|...
T Consensus 90 ------------~~~~~~~--~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~ 155 (366)
T d1hz4a_ 90 ------------ALWSLIQ--QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 155 (366)
T ss_dssp ------------HHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHH
Confidence 0011111 11122358999999999999987642 2345778899999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
+.+++...+..... .....+..++..+...+++.++...+.++...... ....
T Consensus 156 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-------~~~~ 208 (366)
T d1hz4a_ 156 ARSGIEVLSSYQPQ--------------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN-------GKYH 208 (366)
T ss_dssp HHHHHHHTTTSCGG--------------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-------SCCC
T ss_pred HHHHHHHhhhhhhh--------------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------hccc
Confidence 99999887654321 11122456788899999999999999886431111 0111
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh------CC
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL------DG 908 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel------dP 908 (1166)
.......+..++..+...+++++|+..+.+++.+.+...+.....+.++|.+|..+|++++|+..+++++.+ .|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 288 (366)
T d1hz4a_ 209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 288 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccCh
Confidence 223345566779999999999999999999999887666777888999999999999999999999999864 46
Q ss_pred ChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 909 NYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 909 ~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
....++..+|.+|..+|++++|+..|++|+++.+.
T Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 67889999999999999999999999999998654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=2.9e-19 Score=199.83 Aligned_cols=262 Identities=11% Similarity=-0.021 Sum_probs=216.4
Q ss_pred HcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 620 ALG-RMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE----------IEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 620 ~lG-~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd----------~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..+ ..++|+..++++|+++|++..+|..++.++..++. +++|+..|+++++.+|.+...+
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~--------- 110 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW--------- 110 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH---------
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHH---------
Confidence 444 45899999999999999999999888887766544 7899999999999999875432
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLL-EMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al-~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
...+..+.....+++++|+..++++++++|....++ ..++.++...+.+++|+..+++++.++|.+..
T Consensus 111 -----------~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~ 179 (334)
T d1dcea1 111 -----------HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179 (334)
T ss_dssp -----------HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred -----------HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHH
Confidence 223333333456789999999999999999988775 56788999999999999999999999887633
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
+ +..+|.++..+|++++|+..+++++. + .+.. .....
T Consensus 180 a-------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~------------~--~~~~----~~~~~ 216 (334)
T d1dcea1 180 S-------------------------WHYRSCLLPQLHPQPDSGPQGRLPEN------------V--LLKE----LELVQ 216 (334)
T ss_dssp H-------------------------HHHHHHHHHHHSCCCCSSSCCSSCHH------------H--HHHH----HHHHH
T ss_pred H-------------------------HHHHHHHHHHhcCHHHHHHHHHHhHH------------h--HHHH----HHHHH
Confidence 2 56789999999999988776655311 1 1111 22344
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
.+...+.+.+|+..|.+++... |.....+.+++.++..++++.+|+..+.+++..+|.+..++..+|.+|..+|++
T Consensus 217 ~~~~l~~~~~a~~~~~~~l~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 292 (334)
T d1dcea1 217 NAFFTDPNDQSAWFYHRWLLGR----AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 292 (334)
T ss_dssp HHHHHCSSCSHHHHHHHHHHSC----CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGH
T ss_pred HHHHhcchhHHHHHHHHHHHhC----cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCH
Confidence 5677888999999999999887 777788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHhh
Q 039706 928 DHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~~ 948 (1166)
++|+.+|+++++++|.....+
T Consensus 293 ~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 293 KETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp HHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHHHCcccHHHH
Confidence 999999999999999876654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.3e-17 Score=186.65 Aligned_cols=239 Identities=10% Similarity=0.032 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE-IEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd-~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
++.++|.++...+++++|+.++++||+++|.+..+|..+|.++..+|+ +++|+.+++++++++|++...+..+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~------ 118 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR------ 118 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH------
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH------
Confidence 344589999999999999999999999999999999999999999875 9999999999999999975543322
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
+.++ ...|++++|+..++++++++|.+..+|..+|.++..++++++|+..++++++++|.+..+
T Consensus 119 --------------~~~~--~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a 182 (315)
T d2h6fa1 119 --------------RVLV--EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSV 182 (315)
T ss_dssp --------------HHHH--HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH
T ss_pred --------------hHHH--HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHH
Confidence 2222 236889999999999999999999999999999999999999999999999999876432
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
|..+|.++...+.+.
T Consensus 183 -------------------------~~~r~~~l~~~~~~~---------------------------------------- 197 (315)
T d2h6fa1 183 -------------------------WNQRYFVISNTTGYN---------------------------------------- 197 (315)
T ss_dssp -------------------------HHHHHHHHHHTTCSC----------------------------------------
T ss_pred -------------------------HHHHHHHHHHccccc----------------------------------------
Confidence 334555554443310
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHh--
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY--LKAISRRATLYEMI-- 924 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~--~~A~~~LA~ay~~l-- 924 (1166)
..+.+++|++.|.++|.++ |.+..+|++++.++... .+.+|...+++++++.|+. ..++..++.+|...
T Consensus 198 --~~~~~~~ai~~~~~al~~~----P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~ 270 (315)
T d2h6fa1 198 --DRAVLEREVQYTLEMIKLV----PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 270 (315)
T ss_dssp --SHHHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred --hhhhhHHhHHHHHHHHHhC----CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHh
Confidence 1234567778888888777 77777787777775543 3577777788887777653 45556666666543
Q ss_pred hCHHHHHHHHHHHHHHhh
Q 039706 925 RDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 925 GdyeeAi~~yekALeL~P 942 (1166)
++.+.+...+++++++.+
T Consensus 271 ~~~~~~~~~~~ka~~l~~ 288 (315)
T d2h6fa1 271 NQCDNKEDILNKALELCE 288 (315)
T ss_dssp TTCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 455556666666665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.2e-18 Score=191.61 Aligned_cols=212 Identities=9% Similarity=-0.024 Sum_probs=175.1
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCH
Q 039706 635 VAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDA 714 (1166)
Q Consensus 635 LeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~ 714 (1166)
|..+|++..++..+|.++...+.+++|+..+++||+++|++..++.....+ +. ...+++
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~--------------------l~-~l~~~~ 94 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVL--------------------LK-SLQKDL 94 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHH--------------------HH-HTTCCH
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHH--------------------HH-HhCcCH
Confidence 455788899999999999999999999999999999999875544332221 11 013458
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHH
Q 039706 715 EIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRC 794 (1166)
Q Consensus 715 eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~ 794 (1166)
++|+..++++++++|.+..+|..+|.++..+|++++|+..+.++++++|++.
T Consensus 95 ~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~---------------------------- 146 (315)
T d2h6fa1 95 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY---------------------------- 146 (315)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcch----------------------------
Confidence 8888888888888888888888888888888888888888888888877652
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
.+|..+|.++...+++++|+.+|+++|+++ |
T Consensus 147 ---------------------------------------------~a~~~~~~~~~~~~~~~~Al~~~~~al~~~----p 177 (315)
T d2h6fa1 147 ---------------------------------------------HAWQHRQWVIQEFKLWDNELQYVDQLLKED----V 177 (315)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----T
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHC----C
Confidence 223445788888899999999999999998 9
Q ss_pred hhHHHHHHHHHHHHHhhc------hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 875 FAAICFCNRAAAYKALRH------ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq------~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
.+..+|+++|.++..++. +++|+..+.++|.++|++..+|..++.++... ...+|...+++++++.|...
T Consensus 178 ~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 178 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCC
T ss_pred ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcC
Confidence 999999999999888776 67999999999999999999999999986654 46889999999999988753
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=9e-19 Score=195.83 Aligned_cols=278 Identities=9% Similarity=-0.031 Sum_probs=216.1
Q ss_pred chhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 039706 578 RNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE 657 (1166)
Q Consensus 578 ~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd 657 (1166)
+.|..-+.+++..+|+++.++.....- -..+...+..+...+++.+|+.+|+++++.+|++..+|+.+|.++..+++
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~---l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREV---LQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH---HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHH---HHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence 345555556666666655443321100 01122334445556668999999999999999999999999999988875
Q ss_pred --hHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHH
Q 039706 658 --IEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLL 735 (1166)
Q Consensus 658 --~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al 735 (1166)
+++|+..+++++.++|.+...+. ...+.. ....+.+++|+..+++++.++|.+..+|
T Consensus 123 ~~~~~a~~~~~~al~~~~~~~~~~~-------------------~~~~~~--~~~~~~~~~Al~~~~~~i~~~p~~~~a~ 181 (334)
T d1dcea1 123 PNWARELELCARFLEADERNFHCWD-------------------YRRFVA--AQAAVAPAEELAFTDSLITRNFSNYSSW 181 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHH-------------------HHHHHH--HHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred ccHHHHHHHHHHHHhhCchhhhhhh-------------------hHHHHH--HHhccccHHHHHHHHHHHHcCCCCHHHH
Confidence 89999999999999998643321 112222 2347899999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 039706 736 EMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALE 815 (1166)
Q Consensus 736 ~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~le 815 (1166)
..+|.++..+|++++|+..+.+++.+.|.. ..+...+..++..++|...+.
T Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~~~a~~~~~ 232 (334)
T d1dcea1 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKE-----------------------------LELVQNAFFTDPNDQSAWFYH 232 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-----------------------------HHHHHHHHHHCSSCSHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-----------------------------HHHHHHHHHhcchhHHHHHHH
Confidence 999999999999999988888777776532 123344567788888999998
Q ss_pred HHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH
Q 039706 816 RHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD 895 (1166)
Q Consensus 816 kAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee 895 (1166)
+++...+.. ...+..+|..+...+++.+|+..|.+++..+ |....+|..+|.+|..+|++++
T Consensus 233 ~~l~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~e 294 (334)
T d1dcea1 233 RWLLGRAEP--------------LFRCELSVEKSTVLQSELESCKELQELEPEN----KWCLLTIILLMRALDPLLYEKE 294 (334)
T ss_dssp HHHHSCCCC--------------SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCTGGGHHH
T ss_pred HHHHhCcch--------------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC----chHHHHHHHHHHHHHHCCCHHH
Confidence 875544432 2334566888999999999999999999988 9999999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 896 AIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 896 Ai~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
|+.+|++|++++|.....|..++..+.....
T Consensus 295 A~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~ 325 (334)
T d1dcea1 295 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENS 325 (334)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHhHhhH
Confidence 9999999999999999999999888875433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=2.8e-17 Score=175.09 Aligned_cols=207 Identities=15% Similarity=-0.025 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+|+++|.+|..+|+|++|+..|+++|.++|+++.+|+.+|.+|..+|++++|+..|+++++++|++...+..
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~------ 110 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN------ 110 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHH------
Confidence 45689999999999999999999999999999999999999999999999999999999999888875332111
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.+.+ +...|++++|+..|+++++++|.+...+..++.++...+..+.+...........+...
T Consensus 111 --------------lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (259)
T d1xnfa_ 111 --------------RGIA--LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW- 173 (259)
T ss_dssp --------------HHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST-
T ss_pred --------------HHHH--HHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh-
Confidence 1111 11245666666666666666665555555555555555544444333333322211100
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
....+....+..
T Consensus 174 ----------------------------~~~~~~~~~~~~---------------------------------------- 185 (259)
T d1xnfa_ 174 ----------------------------GWNIVEFYLGNI---------------------------------------- 185 (259)
T ss_dssp ----------------------------HHHHHHHHTTSS----------------------------------------
T ss_pred ----------------------------hhhHHHHHHHHH----------------------------------------
Confidence 000011111110
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
...+.+..+...+..++.+. +....+|+++|.+|..+|++++|+.+|++||..+|++.
T Consensus 186 --~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 186 --SEQTLMERLKADATDNTSLA----EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp --CHHHHHHHHHHHCCSHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred --HHHHHHHHHHHHHHHhhhcC----cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 11122334444444444444 66677888888888888888888888888888888754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.6e-16 Score=169.11 Aligned_cols=227 Identities=11% Similarity=-0.041 Sum_probs=148.1
Q ss_pred ChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHH
Q 039706 623 RMRDALSDCMLAVAID----PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSEC 698 (1166)
Q Consensus 623 ~y~eAI~~fekALeld----P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~ 698 (1166)
+++.|+..+++++... |..+.+|+.+|.+|..+|++++|+..|+++|+++|+++..+..+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~l---------------- 77 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL---------------- 77 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhh----------------
Confidence 4566777777777643 34567889999999999999999999999998888864332211
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 699 MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 699 ~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
+.+ +...|++++|+..|++++.++|.++.++..+|.+|..+|++++|+..+++++++.|.+...
T Consensus 78 ----g~~--~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------- 141 (259)
T d1xnfa_ 78 ----GIY--LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR---------- 141 (259)
T ss_dssp ----HHH--HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----------
T ss_pred ----chH--HHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHH----------
Confidence 111 2246777778888888887777777777777777777788888887777777776643110
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
...++.++...+ ....+
T Consensus 142 ---------------~~~~~~~~~~~~------------------------------------------------~~~~~ 158 (259)
T d1xnfa_ 142 ---------------SLWLYLAEQKLD------------------------------------------------EKQAK 158 (259)
T ss_dssp ---------------HHHHHHHHHHHC------------------------------------------------HHHHH
T ss_pred ---------------HHHHHHHHHHhh------------------------------------------------hHHHH
Confidence 111222222222 22222
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
........... ...+....+...++ .....+.+..+...+..++.+.|....+++.+|.+|..+|++++|+..|++++
T Consensus 159 ~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 159 EVLKQHFEKSD-KEQWGWNIVEFYLG-NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHHHHHHHSC-CCSTHHHHHHHHTT-SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhccc-hhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22222222222 11111111111111 11234557777788888888889999999999999999999999999999999
Q ss_pred HHhhhhHH
Q 039706 939 ALLTKQIE 946 (1166)
Q Consensus 939 eL~P~~~e 946 (1166)
...|.+..
T Consensus 237 ~~~p~~~~ 244 (259)
T d1xnfa_ 237 ANNVHNFV 244 (259)
T ss_dssp TTCCTTCH
T ss_pred HcCCCCHH
Confidence 99887643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=3.2e-14 Score=154.33 Aligned_cols=283 Identities=10% Similarity=-0.072 Sum_probs=209.1
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF------LRVQVRAA 649 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~------~~A~~~LA 649 (1166)
+++.|+..+.+++...|++...... .+++.+|.+|+.+|++++|+..|++++.+.+.. ..++..++
T Consensus 27 ~~~~A~~~~~~aL~~~~~~~~~~~~--------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 27 NPDEAERLAKLALEELPPGWFYSRI--------VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCCCcHHHH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3466666677777766664332222 357889999999999999999999999876533 56788999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC
Q 039706 650 NCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS 729 (1166)
Q Consensus 650 ~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P 729 (1166)
.++...|++..|...+.+++.+.+...... ...........+. .+...++++.|+..+.+++...+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~------------~~~~~~~~~~la~--~~~~~~~~~~a~~~~~~~~~~~~ 164 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQ------------LPMHEFLVRIRAQ--LLWAWARLDEAEASARSGIEVLS 164 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------------STHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccch------------hhHHHHHHHHHHH--HHHHhcchhhhHHHHHHHHHHhh
Confidence 999999999999999999987533211000 0000011111111 12357999999999999998765
Q ss_pred C-----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHc
Q 039706 730 Y-----SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL 804 (1166)
Q Consensus 730 ~-----~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~l 804 (1166)
. ....+...+.++...+++.++...+.+++.+....... .......+..++.++...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 165 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH------------------SDWISNANKVRVIYWQMT 226 (366)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC------------------HHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc------------------CchHHHHHHHHHHHHHhc
Confidence 3 35677888999999999999999999999887654321 011122345678899999
Q ss_pred CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCchhHHHHHH
Q 039706 805 GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHPFAAICFCN 882 (1166)
Q Consensus 805 Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p~~a~a~~n 882 (1166)
|++++|...+++++...+. ........+..+|.++...|++++|+.+|++++.+.. ...+....++..
T Consensus 227 ~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFA----------NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCT----------TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccc----------cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 9999999999997554332 1122344566789999999999999999999987543 334677889999
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCC
Q 039706 883 RAAAYKALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 883 lA~ay~~lGq~eeAi~~lekALeldP 908 (1166)
+|.+|..+|++++|+..+++|+++.+
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998754
|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: DnaJ chaperone, N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.3e-15 Score=134.37 Aligned_cols=68 Identities=41% Similarity=0.688 Sum_probs=62.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.|||.+|||+++++.++|+++|++++++||||+++.. ..++..|+.|++||+||+||.+|
T Consensus 3 ~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~--------------------~~~~~~f~~i~~Ay~vL~d~~~R 62 (75)
T d1xbla_ 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--------------------KEAEAKFKEIKEAYEVLTDSQKR 62 (75)
T ss_dssp CCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTT--------------------CHHHHHHHHHHHHHHHTTSSHHH
T ss_pred CCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCC--------------------hHHHHHHHHHHHHHHhcCCHHHH
Confidence 4999999999999999999999999999999997531 35778899999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||.++.
T Consensus 63 ~~YD~~g~ 70 (75)
T d1xbla_ 63 AAYDQYGH 70 (75)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCc
Confidence 99998764
|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=5.2e-15 Score=135.95 Aligned_cols=73 Identities=32% Similarity=0.575 Sum_probs=65.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||+||||++.++.++|+++|++++++|||||+... ........++++|+.|++||+||+||.+|
T Consensus 16 ~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~--------------~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R 81 (94)
T d1wjza_ 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSAD--------------VPAGTMEECMQKFIEIDQAWKILGNEETK 81 (94)
T ss_dssp SCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTT--------------CCHHHHHHHHHHHHHHHHHHHHHSSSSHH
T ss_pred cChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhcccc--------------chHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5999999999999999999999999999999997532 23445678999999999999999999999
Q ss_pred cccchhh
Q 039706 1064 SRYDLEE 1070 (1166)
Q Consensus 1064 ~~YD~~~ 1070 (1166)
+.||...
T Consensus 82 ~~YD~~~ 88 (94)
T d1wjza_ 82 KKYDLQR 88 (94)
T ss_dssp HHHHHHS
T ss_pred HHHHHcc
Confidence 9999854
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1e-13 Score=131.85 Aligned_cols=106 Identities=22% Similarity=0.346 Sum_probs=100.1
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
+..++..|+.++..|+|++|+.+|+++|+++ |.++.+|+++|.+|..+|++++|+.+|.+++.++|+++.+|+++|
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 78 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 78 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHH
Confidence 3445678999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+|..+|++++|+..|+++++++|++.+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 108 (117)
T d1elwa_ 79 AALEFLNRFEEAKRTYEEGLKHEANNPQLK 108 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999986644
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.1e-14 Score=172.49 Aligned_cols=229 Identities=10% Similarity=0.014 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 039706 626 DALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL 705 (1166)
Q Consensus 626 eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~ 705 (1166)
+|+++|++|++++|+++.+++.+|.+|..++++++| |+++|.++|+......... ..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~-------------~Lw~----- 62 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQ-------------DLWN----- 62 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHH-------------HHHH-----
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHH-------------HHHH-----
Confidence 799999999999999999999999999999999887 8999999887433221100 0010
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhC--CChHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 706 LQNKTSNDAEIALGVIDEALFIS--SYSEK-LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 706 l~~~~~gd~eeALe~lekALel~--P~~~~-al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
..|..+++.+++.++.. +.... ....++.++...+.|+.|+..+.+++.+.|.+...
T Consensus 63 ------~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~-------------- 122 (497)
T d1ya0a1 63 ------HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVK-------------- 122 (497)
T ss_dssp ------HHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred ------HHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHH--------------
Confidence 11345666666666543 22222 22334566667788889998888888887765433
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
+..+|.++...+++++|+..+++++. ..+ ...+..+|.++...++|++|+.+|
T Consensus 123 -----------~~~lg~~~~~~~~~~~A~~~~~~al~--------------~~~--~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 123 -----------SSQLGIISNKQTHTSAIVKPQSSSCS--------------YIC--QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp -------------------------------CCHHHH--------------HHH--HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------HHHhHHHHHhCCCHHHHHHHHHHHhC--------------CCH--HHHHHHHHHHHHHcccHHHHHHHH
Confidence 35588889999999999998877521 112 245667899999999999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 863 TAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
++|+.++ |.++.+|+++|.+|...|++.+|+.+|.+||.++|.++.|+.+|+.++.+..+
T Consensus 176 ~~A~~l~----P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 176 RHAAQLV----PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HHHHHHC----TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHC----CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence 9999998 99999999999999999999999999999999999999999999999876643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=9.1e-14 Score=142.10 Aligned_cols=104 Identities=29% Similarity=0.404 Sum_probs=99.2
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
+..++..|+.++..|+|++|+.+|++||.++ |.++.+|+++|.||..+|++++|+.+|++||+++|+++.+|+++|
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~----p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 4567788999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.+|..+|+|++|+..|++|+++.|....
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 9999999999999999999999997644
|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSP40 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.9e-14 Score=126.24 Aligned_cols=68 Identities=51% Similarity=0.728 Sum_probs=62.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++|+++|+++++++|||+... ..+.++|+.|.+||+||+||.+|
T Consensus 3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~---------------------~~~~~~~~~i~~Ay~vLsdp~~R 61 (77)
T d1hdja_ 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---------------------PGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---------------------TTHHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc---------------------hhHHHHHHHHHHHHHHhcCHHHH
Confidence 489999999999999999999999999999999752 35678899999999999999999
Q ss_pred cccchhhhh
Q 039706 1064 SRYDLEEET 1072 (1166)
Q Consensus 1064 ~~YD~~~~~ 1072 (1166)
+.||+++..
T Consensus 62 ~~YD~~g~~ 70 (77)
T d1hdja_ 62 EIFDRYGEE 70 (77)
T ss_dssp HHHHHTCGG
T ss_pred HHHHhhhhh
Confidence 999997653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=1.7e-12 Score=142.09 Aligned_cols=206 Identities=9% Similarity=-0.017 Sum_probs=152.2
Q ss_pred cCCCHHHHHHHHHHHHHhC------CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccch
Q 039706 710 TSNDAEIALGVIDEALFIS------SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSES 783 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~------P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~ 783 (1166)
..++|++|+.+|.+|+.+. +.....+..+|.+|..+|++++|+.+|++++.+.+.....
T Consensus 49 ~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~--------------- 113 (290)
T d1qqea_ 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF--------------- 113 (290)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------------
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc---------------
Confidence 4789999999999999874 2345788999999999999999999999999998765321
Q ss_pred hhhhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 784 TKHVSFRLWRCCLIFKSYFT-LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 784 ~~~~~~~~wr~~lLA~ay~~-lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
......+..+|.+|.. .|++++|+.+|++++. ..............+..+|.++...|+|++|+..|
T Consensus 114 ----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~--------l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~ 181 (290)
T d1qqea_ 114 ----RRGANFKFELGEILENDLHDYAKAIDCYELAGE--------WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (290)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH--------HHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHH
Confidence 0111224567888865 6999999999999743 11112223334567888999999999999999999
Q ss_pred HHHHhccccC---CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHH-----HHHHHHHHHH--hhCHHHHHH
Q 039706 863 TAALSCTVES---HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKA-----ISRRATLYEM--IRDYDHAAS 932 (1166)
Q Consensus 863 ~kALel~~e~---~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A-----~~~LA~ay~~--lGdyeeAi~ 932 (1166)
++++...+.. .......+.+.+.++...+++..|...++++++++|..... +..+..++.. .+.+.+|+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~ 261 (290)
T d1qqea_ 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261 (290)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999876432 12334567889999999999999999999999999876543 3445555544 356899999
Q ss_pred HHHHHHHHhh
Q 039706 933 DFHRLIALLT 942 (1166)
Q Consensus 933 ~yekALeL~P 942 (1166)
.|.++.+++|
T Consensus 262 ~y~~~~~lD~ 271 (290)
T d1qqea_ 262 EFDNFMRLDK 271 (290)
T ss_dssp HHTTSSCCCH
T ss_pred HHHHHhhcCH
Confidence 9987776644
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=4e-13 Score=134.10 Aligned_cols=108 Identities=25% Similarity=0.370 Sum_probs=102.3
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
..+..++..|+.+++.|+|++|+.+|+++|+++ |.++.+|+++|.+|..+|++++|+.+|+++|+++|+++.+|..
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~ 83 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 83 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccc----hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH
Confidence 456667788999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 917 RATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+|.+|..+|++++|+.+|++++++.|.+.+..
T Consensus 84 ~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~ 115 (159)
T d1a17a_ 84 RAASNMALGKFRAALRDYETVVKVKPHDKDAK 115 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999887654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=3.3e-12 Score=139.72 Aligned_cols=218 Identities=13% Similarity=-0.015 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAID------PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeld------P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
.|.+.|.+|..+++|++|+..|.+|+++. +....+|..+|.||..+|++++|+.+|++++.+.+..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~-------- 110 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-------- 110 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--------
Confidence 46667999999999999999999999974 3346789999999999999999999999999864432
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHccCHHHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY------SEKLLEMKAEALFMLRKYEEVIQLCEQ 757 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~------~~~al~~lA~~y~~lGdyeeAi~~lek 757 (1166)
.........+..++..+. ...+++++|+.+|++++.+.+. ...++..+|.+|..+|+|++|+..|++
T Consensus 111 ------~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~ 183 (290)
T d1qqea_ 111 ------GQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (290)
T ss_dssp ------TCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------ccchhHHHHHHHHHHhHh-hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence 111122223333333321 2369999999999999987432 346788999999999999999999999
Q ss_pred HHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchH
Q 039706 758 TFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVR 837 (1166)
Q Consensus 758 ALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~ 837 (1166)
++...+..... .+...+.+..++.++...++++.|...++++...++.- ...+
T Consensus 184 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~---------~~sr 236 (290)
T d1qqea_ 184 LIKSSMGNRLS------------------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF---------ADSR 236 (290)
T ss_dssp HHHTTSSCTTT------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------------
T ss_pred HHHhCccchhh------------------hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------cchH
Confidence 99988765432 01112334567888999999999999999976544321 1111
Q ss_pred HHHHHhhhhHHHHH--cCChHHHHHHHHHHHhcc
Q 039706 838 ELLCRKSAGNEAFQ--AGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~--~G~yeEAie~y~kALel~ 869 (1166)
....+..+...+.. .+.+.+|+..|.+++.++
T Consensus 237 e~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 12222333333322 356888888888877766
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.41 E-value=1.4e-12 Score=129.94 Aligned_cols=113 Identities=20% Similarity=0.290 Sum_probs=99.6
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC------------chhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH------------PFAAICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~------------p~~a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
...+..+...|+.+++.|+|.+|+..|++||.+.+... +....+|.|+|.||.++|++++|+.+|.+|
T Consensus 14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a 93 (153)
T d2fbna1 14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 93 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence 34566777889999999999999999999998653211 123468899999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 904 IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 904 LeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|+++|.+..+|+++|.+|..+|++++|+.+|+++++++|++.+..
T Consensus 94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~ 138 (153)
T d2fbna1 94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 138 (153)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999999999999987643
|
| >d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Simian virus 40, Sv40 [TaxId: 10633]
Probab=99.40 E-value=2e-14 Score=136.92 Aligned_cols=63 Identities=27% Similarity=0.422 Sum_probs=57.0
Q ss_pred cchhhhcccCCCC--CHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESSV--SVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~a--s~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.+||+||||++.| +.++||+|||++|+++||||++. +++|++|++||+||+||.
T Consensus 8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~------------------------~e~F~~I~~AY~vLsd~~ 63 (114)
T d1gh6a_ 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------------------------EEKMKKMNTLYKKMEDGV 63 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------------------------TTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh------------------------HHHHHHHHHHHHHhCCHH
Confidence 4899999999998 78899999999999999999752 246999999999999999
Q ss_pred hhcccchhh
Q 039706 1062 KRSRYDLEE 1070 (1166)
Q Consensus 1062 kR~~YD~~~ 1070 (1166)
+|+.||..+
T Consensus 64 kR~~YD~~~ 72 (114)
T d1gh6a_ 64 KYAHQPDFG 72 (114)
T ss_dssp HSCCSSCCS
T ss_pred HHHHHhccC
Confidence 999999754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.2e-12 Score=133.45 Aligned_cols=131 Identities=12% Similarity=0.046 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
.++..|..++..|++++|+..|.++.. ..+..+.++|.+++..|+|++|+.+|++||+++
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i~~-----------------~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--- 66 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAVQD-----------------PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--- 66 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---
Confidence 345679999999999999999986411 113457789999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh----------------HHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY----------------LKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~----------------~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
|..+.+|+++|.+|.++|++++|+.+|++|+...+.+ .++++++|.+|..+|++++|+..|++
T Consensus 67 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~ 145 (192)
T d1hh8a_ 67 -KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 145 (192)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999875432 47899999999999999999999999
Q ss_pred HHHHhhhh
Q 039706 937 LIALLTKQ 944 (1166)
Q Consensus 937 ALeL~P~~ 944 (1166)
|+.+.|+.
T Consensus 146 A~~~~~~~ 153 (192)
T d1hh8a_ 146 ATSMKSEP 153 (192)
T ss_dssp HHTTCCSG
T ss_pred HHhcCCCc
Confidence 99887653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.36 E-value=3.2e-12 Score=128.87 Aligned_cols=109 Identities=24% Similarity=0.346 Sum_probs=97.8
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccc------------cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV------------ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~------------e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
+..+...|+.++..|+|.+|+..|++||.+.+ ...|....+|.++|.||.++|+|++|+.+|++||++
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 106 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 106 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence 34456679999999999999999999987531 234677889999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 907 DGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 907 dP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
+|+++.+|+++|.+|..+|++++|+.+|+++++++|++.+.
T Consensus 107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~ 147 (169)
T d1ihga1 107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 147 (169)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999987653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=5.1e-12 Score=127.95 Aligned_cols=112 Identities=24% Similarity=0.344 Sum_probs=99.6
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC-----------chhHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH-----------PFAAICFCNRAAAYKALRHITDAIADCNLAIA 905 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~-----------p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe 905 (1166)
..+..+...|+.++..|+|++|+.+|++||.+.+... +....+|.++|.||+++|+|++|+.+|+++|.
T Consensus 11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~ 90 (170)
T d1p5qa1 11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 90 (170)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence 3466778889999999999999999999998864211 23356788999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 906 ldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++....
T Consensus 91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~ 133 (170)
T d1p5qa1 91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133 (170)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999999999886643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.34 E-value=8.4e-12 Score=125.86 Aligned_cols=112 Identities=25% Similarity=0.386 Sum_probs=99.3
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc-----------CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE-----------SHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e-----------~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe 905 (1166)
..+..+...|+.++..|+|.+|+..|++||.+.+. ..+....+|.|+|.||..+|++.+|+.+|+++|.
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~ 92 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence 44667788899999999999999999999975421 1123456788999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 906 ldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
++|.++.+|+++|.+|..+|+|++|+.+|+++++++|++.+..
T Consensus 93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~ 135 (168)
T d1kt1a1 93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135 (168)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999999999986644
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=2.8e-13 Score=119.48 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=62.1
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
+|||++||+++. ++.++|+++|++++++||||+.... ....+..+...|+.|++||+||+||.
T Consensus 1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~---------------~~~~~~~a~~~~~~i~~Ay~vL~dp~ 65 (76)
T d1fpoa1 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASG---------------SQAEQLAAVQQSATINQAWQTLRHPL 65 (76)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTS---------------CHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccc---------------hHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 489999999985 4589999999999999999997521 23446778999999999999999999
Q ss_pred hhcccchhh
Q 039706 1062 KRSRYDLEE 1070 (1166)
Q Consensus 1062 kR~~YD~~~ 1070 (1166)
+|+.|+..+
T Consensus 66 ~R~~Yll~l 74 (76)
T d1fpoa1 66 MRAEYLLSL 74 (76)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999998754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.4e-11 Score=125.43 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
++..++++|..++..|+|++|+..|.+ +.|.++.+|+++|.+|..+|++++|+.+|++|++++|
T Consensus 4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp------------- 67 (192)
T d1hh8a_ 4 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------------- 67 (192)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-------------
Confidence 345678999999999999999999986 4677889999999999999999999999988776554
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
..+.++.++|.+|..+|+|++|+..|++++...+.+.
T Consensus 68 -------------------------------------------~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~ 104 (192)
T d1hh8a_ 68 -------------------------------------------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 104 (192)
T ss_dssp -------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred -------------------------------------------hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCc
Confidence 4567889999999999999999999999998876553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.4e-11 Score=120.87 Aligned_cols=128 Identities=12% Similarity=-0.025 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..|..+|..|+..|+|++|+.+|+++++++|++..+|+.+|.+|+.+|++++|+..|+++++++|.+...+..+
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~------ 84 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR------ 84 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHH------
Confidence 34667999999999999999999999999999999999999999999999999999999999999965433222
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH--HHccCHHHHHHHHHHH
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEAL--FMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y--~~lGdyeeAi~~lekA 758 (1166)
+.+ +...|++++|+..|++++.+.|.++.++..++.+. ...+.+++|+......
T Consensus 85 --------------g~~--~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~ 140 (159)
T d1a17a_ 85 --------------AAS--NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 140 (159)
T ss_dssp --------------HHH--HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHH--HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 112 23489999999999999999999999988887765 4455677787654443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.1e-11 Score=115.63 Aligned_cols=110 Identities=17% Similarity=0.086 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
+.++|..++..|+|++|+..|+++|+++|.++.+|..+|.+|..+|++++|+..|.++++++|++...+..+
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-------- 77 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK-------- 77 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHH--------
Confidence 567999999999999999999999999999999999999999999999999999999999999865433222
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEAL 742 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y 742 (1166)
+.+ +...|++++|+..|+++++++|.++.++..++.+.
T Consensus 78 ------------g~~--~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 78 ------------AAA--LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp ------------HHH--HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ------------HHH--HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 222 22478999999999999999999998888887764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=8.2e-13 Score=156.27 Aligned_cols=279 Identities=7% Similarity=-0.060 Sum_probs=163.6
Q ss_pred hHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 039706 580 SEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIE 659 (1166)
Q Consensus 580 a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~e 659 (1166)
|+.-+++++.++|+.+.+ ++++|.+|...+++++| |+++|.++|++..++...+.+. ...|.
T Consensus 5 A~q~~~qA~~l~p~~a~a-------------~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~ 66 (497)
T d1ya0a1 5 SAQYLRQAEVLKADMTDS-------------KLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFK 66 (497)
T ss_dssp HHHHHHHHHHHHGGGTCS-------------SSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTH
T ss_pred HHHHHHHHHHcCCCCHHH-------------HhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHH
Confidence 455556666666665544 45589999999999987 8999999998877764433332 23467
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 660 DASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKA 739 (1166)
Q Consensus 660 eAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA 739 (1166)
.+++.+++.++....... ..... .+ ...+ ....+.|..|+..|.+++.+.|.+...+..+|
T Consensus 67 ~~ie~~r~~~k~~~~~~~-~~~~~--------------~~---~~~l-~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg 127 (497)
T d1ya0a1 67 NQITTLQGQAKNRANPNR-SEVQA--------------NL---SLFL-EAASGFYTQLLQELCTVFNVDLPCRVKSSQLG 127 (497)
T ss_dssp HHHHHHHHHHSCSSCTTT-THHHH--------------HH---HHHH-HHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHhcccccCccH-HHHHH--------------HH---HHHH-HHHHHHHHHHHHHHHHHHCCChhhHHHHHHhH
Confidence 788888887765432111 00000 00 0000 11246688999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039706 740 EALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES 819 (1166)
Q Consensus 740 ~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~ 819 (1166)
.++...+++++|+..+.+++..++. +.+..+|.++...+++++|+.+|++|+.
T Consensus 128 ~~~~~~~~~~~A~~~~~~al~~~~~---------------------------~~~~~LG~l~~~~~~~~~A~~~y~~A~~ 180 (497)
T d1ya0a1 128 IISNKQTHTSAIVKPQSSSCSYICQ---------------------------HCLVHLGDIARYRNQTSQAESYYRHAAQ 180 (497)
T ss_dssp ---------------CCHHHHHHHH---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhCCCHH---------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999999877552 1245699999999999999999999854
Q ss_pred CCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHH
Q 039706 820 GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIAD 899 (1166)
Q Consensus 820 ~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~ 899 (1166)
.. +.....+.++|.++...|++.+|+.+|.+||.+. +..+.++.|++.++.+..+..++...
T Consensus 181 l~--------------P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~----~~~~~a~~nL~~~~~~~~~~~~~~~~ 242 (497)
T d1ya0a1 181 LV--------------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK----FPFPAASTNLQKALSKALESRDEVKT 242 (497)
T ss_dssp HC--------------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS----BCCHHHHHHHHHHHHHHTTSCCCCCS
T ss_pred HC--------------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHhhhhhhhhcc
Confidence 33 3446678889999999999999999999999988 77899999999998766543322110
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 900 CNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 900 lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
- ...+.....+..+..+++....++......++++......
T Consensus 243 ~----~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 283 (497)
T d1ya0a1 243 K----WGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKEL 283 (497)
T ss_dssp S----CCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred c----cccchHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 0 0001122334444445555556665555555555544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.1e-12 Score=123.45 Aligned_cols=101 Identities=24% Similarity=0.294 Sum_probs=89.2
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH------
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL------ 911 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~------ 911 (1166)
.+..++++|+.++..|+|++|+.+|+++|+++ |.++.+|.++|.+|..+|+|++|+.+|++||+++|.+.
T Consensus 3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~ 78 (128)
T d1elra_ 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHH
Confidence 46677889999999999999999999999998 88999999999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 912 -KAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 912 -~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
.+|..+|.++..++++++|+.+|++++.+.+
T Consensus 79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 4566677777788888888888888887644
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=1.5e-11 Score=125.22 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..+.+.|..|+..|+|++|+..|++||.++|.++.+|..+|.||..+|++++|+.+|++|++++|+
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-------------- 70 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-------------- 70 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC--------------
Confidence 446789999999999999999999999999999999999999999999999999999888776655
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
++.+|+.+|.+|..+|+|++|+..|++++.+.|....
T Consensus 71 ------------------------------------------~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 71 ------------------------------------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------------------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 4566888999999999999999999999999887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=9.1e-11 Score=129.06 Aligned_cols=239 Identities=9% Similarity=-0.025 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 039706 624 MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA 703 (1166)
Q Consensus 624 y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~ 703 (1166)
...++..|++||...|.++..|+..+..+...++...... ..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~---------~~----------------------------- 73 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG---------DM----------------------------- 73 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS---------CC-----------------------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHH---------HH-----------------------------
Confidence 3456678888888888888888876665443221100000 00
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 704 QLLQNKTSNDAEIALGVIDEALFI-SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 704 ~~l~~~~~gd~eeALe~lekALel-~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
....+..++|...|++++.. .|.+..+|..++.++..+|++++|...|++++...|.+..
T Consensus 74 ----~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~--------------- 134 (308)
T d2onda1 74 ----NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------- 134 (308)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---------------
T ss_pred ----hhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH---------------
Confidence 00123456778888888874 6888889999999999999999999999999987665421
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH-HHcCChHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA-FQAGRHSEAVEH 861 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~-~~~G~yeEAie~ 861 (1166)
.+ +..++..+...++++.|+..|++++...+.. ...+...+... ...++.+.|..+
T Consensus 135 -------~~--w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~--------------~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 135 -------LV--YIQYMKFARRAEGIKSGRMIFKKAREDARTR--------------HHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp -------HH--HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--------------THHHHHHHHHHHHTSCCHHHHHHH
T ss_pred -------HH--HHHHHHHHHHcCChHHHHHHHHHHHHhCCCc--------------HHHHHHHHHHHHHhccCHHHHHHH
Confidence 11 3446677788899999999999986544432 12233334443 346899999999
Q ss_pred HHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH----HHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 862 YTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL----KAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 862 y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~----~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
|++++... |.+..+|...+..+...|+++.|...|++|+...|..+ ..|..........|+.+.+...++++
T Consensus 192 ~e~~l~~~----p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 192 FELGLKKY----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhh----hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 88899999999999999999999999999999876543 46666777777889999999999999
Q ss_pred HHHhhhhHH
Q 039706 938 IALLTKQIE 946 (1166)
Q Consensus 938 LeL~P~~~e 946 (1166)
.+++|+...
T Consensus 268 ~~~~~~~~~ 276 (308)
T d2onda1 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHCccccc
Confidence 999987643
|
| >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Murine polyomavirus [TaxId: 10634]
Probab=99.25 E-value=8.1e-13 Score=116.76 Aligned_cols=62 Identities=18% Similarity=0.388 Sum_probs=56.4
Q ss_pred cchhhhcccCCCC--CHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESSV--SVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~a--s~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.+||++|||++.+ +.++|+++|++++++||||+.+. +++|++|++||++|+|+.
T Consensus 11 ~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~------------------------~e~~~~in~Ay~~L~d~~ 66 (79)
T d1fafa_ 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------------------------HALMQELNSLWGTFKTEV 66 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC------------------------HHHHHHHHHHHHHHCCHH
Confidence 4899999999987 89999999999999999999751 357999999999999999
Q ss_pred hhcccchh
Q 039706 1062 KRSRYDLE 1069 (1166)
Q Consensus 1062 kR~~YD~~ 1069 (1166)
+|.+||.+
T Consensus 67 ~r~~~~~~ 74 (79)
T d1fafa_ 67 YNLRMNLG 74 (79)
T ss_dssp HHHTTCCS
T ss_pred HHHHHccC
Confidence 99999974
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.25 E-value=1.5e-11 Score=115.67 Aligned_cols=93 Identities=14% Similarity=0.030 Sum_probs=89.6
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
++.+|..+++.|++.+|+..|++++.++ |.++.+|+++|.++..++++++|+.+|++|++++|+++.+|+.+|.+|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc----cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHH
Confidence 4567999999999999999999999998 889999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHH
Q 039706 922 EMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 922 ~~lGdyeeAi~~yekAL 938 (1166)
..+|++++|++.|+++|
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999999986
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.1e-10 Score=117.87 Aligned_cols=142 Identities=16% Similarity=0.059 Sum_probs=112.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCch-hhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKM-LESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~-le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
+...|..++..|+|++|+..|++++...+... ...........-....+.++|.+|++.|+|++|+.+++++|.++
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~--- 92 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--- 92 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc---
Confidence 45689999999999999999999876332211 00001111122234567789999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHH-HHHHHHH
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAAS-DFHRLIA 939 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~-~yekALe 939 (1166)
|.++.+|+++|.+|..+|++++|+.+|++|++++|+++.+...++.++..++.+.+... .|++.+.
T Consensus 93 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 159 (170)
T d1p5qa1 93 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 159 (170)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999988877765543 3444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.19 E-value=1.6e-10 Score=116.26 Aligned_cols=143 Identities=13% Similarity=0.022 Sum_probs=112.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCch-hhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKM-LESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~-le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
+...|..++..|+|.+|+..|++++...+... .............+..+.++|.+|+.+++|.+|+.+++++|.++
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~--- 94 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--- 94 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc---
Confidence 45689999999999999999999865211110 00001111222345567789999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHH-HHHHHHHHHHH
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDH-AASDFHRLIAL 940 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyee-Ai~~yekALeL 940 (1166)
|.+..+|+++|.+|..+|+|++|+.+|.+++.++|++..++..++.+...++.+.+ ....|.+.++-
T Consensus 95 -p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 95 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999888776654 44445554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.18 E-value=5.4e-09 Score=111.24 Aligned_cols=231 Identities=11% Similarity=-0.012 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
+.+++++|..++..+++.+|+.+|++|.+. ++..+++.||.+|.. ..++..|..+++++...... ...
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~--~a~---- 73 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS--NGC---- 73 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--HHH----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc--chh----
Confidence 567889999999999999999999999765 688999999999987 66888898888887764321 110
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQ--NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~--~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
..+...+. .....+...|+..+++++...+. .+...++..+.....
T Consensus 74 ----------------~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~--~a~~~l~~~~~~~~~-------------- 121 (265)
T d1ouva_ 74 ----------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA--EGCASLGGIYHDGKV-------------- 121 (265)
T ss_dssp ----------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHCSS--------------
T ss_pred ----------------hccccccccccccchhhHHHHHHHhhhhhhhhh--hHHHhhcccccCCCc--------------
Confidence 00111111 12245667777777777665432 333334443332110
Q ss_pred ccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHH
Q 039706 762 AEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLC 841 (1166)
Q Consensus 762 ~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~ 841 (1166)
.......|+..+.+.... .....
T Consensus 122 -----------------------------------------~~~~~~~a~~~~~~~~~~----------------~~~~~ 144 (265)
T d1ouva_ 122 -----------------------------------------VTRDFKKAVEYFTKACDL----------------NDGDG 144 (265)
T ss_dssp -----------------------------------------SCCCHHHHHHHHHHHHHT----------------TCHHH
T ss_pred -----------------------------------------ccchhHHHHHHhhhhhcc----------------cccch
Confidence 011222333333322110 01122
Q ss_pred HhhhhHHHHH----cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhCCChHHH
Q 039706 842 RKSAGNEAFQ----AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA----LRHITDAIADCNLAIALDGNYLKA 913 (1166)
Q Consensus 842 l~~lG~~~~~----~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeldP~~~~A 913 (1166)
+..+|..+.. ..+...+..+++.+.+ ..++.+++++|.+|.. ..++++|+.+|.++.+. .++.+
T Consensus 145 ~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~------~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a 216 (265)
T d1ouva_ 145 CTILGSLYDAGRGTPKDLKKALASYDKACD------LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGG 216 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred hhhhhhhhccCCCcccccccchhhhhcccc------ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHH
Confidence 2334444443 4566677778888775 4467788899988887 67899999999999887 46889
Q ss_pred HHHHHHHHHH----hhCHHHHHHHHHHHHHHhhh
Q 039706 914 ISRRATLYEM----IRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 914 ~~~LA~ay~~----lGdyeeAi~~yekALeL~P~ 943 (1166)
++.||.+|.. ..++++|+.+|++|..+-..
T Consensus 217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 9999999985 44899999999999876433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.18 E-value=8.3e-11 Score=118.22 Aligned_cols=134 Identities=17% Similarity=0.129 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCch--hhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKM--LESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~--le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e 871 (1166)
+...|..++..|+|++|+..|++++....... ..........+..+..+.++|.++++.|+|++|+..|++||+++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-- 107 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 107 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh--
Confidence 35578899999999999999999764211100 00011122344567778899999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHH
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi 931 (1166)
|.++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..+..+.++.
T Consensus 108 --p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 108 --PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999988877766654
|
| >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Auxilin J-domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.17 E-value=4e-12 Score=117.22 Aligned_cols=66 Identities=26% Similarity=0.430 Sum_probs=59.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.++|.+||+...++..+||++|+++++++||||++. ...+..|++.|+.|++||++|+||.+|
T Consensus 33 ~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~-----------------~~~~~~a~~~f~~I~~Ay~~L~d~~~R 95 (98)
T d1nz6a_ 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATG-----------------QPYEQYAKMIFMELNDAWSEFENQGQK 95 (98)
T ss_dssp CCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTT-----------------STTHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCC-----------------hHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 467999999999999999999999999999999753 123456899999999999999999999
Q ss_pred ccc
Q 039706 1064 SRY 1066 (1166)
Q Consensus 1064 ~~Y 1066 (1166)
+.|
T Consensus 96 ~~Y 98 (98)
T d1nz6a_ 96 PLY 98 (98)
T ss_dssp CCC
T ss_pred hcC
Confidence 988
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.16 E-value=1.7e-10 Score=114.45 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=105.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCch--hhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKM--LESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~--le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e 871 (1166)
+...|..++..|+|.+|+..|++++...+... .............+..+.++|.+|+++|+|++|+.+|++||+++
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-- 97 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-- 97 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc--
Confidence 45689999999999999999999876332211 00011111122235567889999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
|.+..+|+++|.+|..+|++++|+.+|+++++++|++..+...++.+..++++
T Consensus 98 --p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 98 --KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred --chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999888776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.15 E-value=1.5e-10 Score=114.91 Aligned_cols=109 Identities=18% Similarity=0.281 Sum_probs=93.3
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC--------chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH--------PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~--------p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~ 909 (1166)
.+..++..|+.++..|+|++|+..|++||++.+... +..+.+|.++|.+|..+|+|++|+.+|+++|.+.|.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 344455669999999999999999999999885332 234688999999999999999999999999988542
Q ss_pred -----------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 910 -----------YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 910 -----------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
...+++++|.+|..+|++++|+..|++++++.|+...
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 3558899999999999999999999999999987754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.1e-10 Score=111.92 Aligned_cols=101 Identities=9% Similarity=-0.011 Sum_probs=91.8
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH---hhchhHHHHHHHHHHHhCCCh--HHHHHHHH
Q 039706 844 SAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA---LRHITDAIADCNLAIALDGNY--LKAISRRA 918 (1166)
Q Consensus 844 ~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~---lGq~eeAi~~lekALeldP~~--~~A~~~LA 918 (1166)
++++.+...+++++|.+.|+++|.++ |.++.+++++|.++.. .+++++|+..|++++..+|.. +.+|+.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~----p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 45778889999999999999999998 9999999999999986 567788999999999998765 56999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+|..+|+|++|+.+|+++++++|++.++.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~ 109 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAK 109 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHH
Confidence 999999999999999999999999987643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.10 E-value=3e-10 Score=106.63 Aligned_cols=93 Identities=5% Similarity=-0.115 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
++++|.+++..|++.+|+..|++++.++|+++.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------------- 82 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---------------- 82 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc----------------
Confidence 4678999999999999999999999999999999999999999999999999999887766554
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
+..++..+|.+|..+|++++|++.+++.|
T Consensus 83 ----------------------------------------~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 83 ----------------------------------------DIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 45667778888888888888888887765
|
| >d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Hypothetical protein KIAA0730 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2e-11 Score=109.92 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=56.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.++|.+|++..+++.++||+||++++++||||+++.. .+.|.+.|+.|++||++|+ ++
T Consensus 16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~-------------------~~~a~~~f~~i~~Ay~~L~---~~ 73 (88)
T d1iura_ 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-------------------HDIANEVFKHLQNEINRLE---KQ 73 (88)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-------------------HHHHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccch-------------------hhHHHHHHHHHHHHHHHHH---HH
Confidence 5899999999999999999999999999999998631 3578999999999999996 46
Q ss_pred cccchhh
Q 039706 1064 SRYDLEE 1070 (1166)
Q Consensus 1064 ~~YD~~~ 1070 (1166)
..||...
T Consensus 74 ~~~d~~~ 80 (88)
T d1iura_ 74 AFLDQNA 80 (88)
T ss_dssp TTCSSSS
T ss_pred HHhhccc
Confidence 6677644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=2.2e-09 Score=117.69 Aligned_cols=189 Identities=11% Similarity=-0.015 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHHhc-cCCCCCccccCccccc
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFML--------------RKYEEVIQLCEQTFHFA-EKNSPPLDANGQSMEL 778 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~l--------------GdyeeAi~~lekALel~-p~n~~a~~~~g~~l~l 778 (1166)
...++..|++||...|.++.+|...+..+... +..++|...|++++... |..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~------------- 98 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN------------- 98 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC-------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCC-------------
Confidence 45677889999999999999999888866543 34578899999998753 321
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
..+ +..++..+...|+++.|...|++++...+.. ....+...+......++++.|
T Consensus 99 ----------~~l--~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~-------------~~~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 99 ----------MLL--YFAYADYEESRMKYEKVHSIYNRLLAIEDID-------------PTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp ----------HHH--HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-------------THHHHHHHHHHHHHHHCHHHH
T ss_pred ----------HHH--HHHHHHHHHhcccHHHHHHHHHHHHHHhcCC-------------hHHHHHHHHHHHHHcCChHHH
Confidence 011 3457788999999999999999986544432 122345567888899999999
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHH-hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKA-LRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~-lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
...|.+++... |.....|...|..... .|+.+.|...|++++...|.++..|...+..+...|+++.|...|+++
T Consensus 154 r~i~~~al~~~----~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a 229 (308)
T d2onda1 154 RMIFKKAREDA----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHTST----TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999887 7777888888876544 588999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q 039706 938 IALLTKQ 944 (1166)
Q Consensus 938 LeL~P~~ 944 (1166)
+...|..
T Consensus 230 i~~~~~~ 236 (308)
T d2onda1 230 LTSGSLP 236 (308)
T ss_dssp HHSSSSC
T ss_pred HHhCCCC
Confidence 9976644
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=8.6e-10 Score=105.87 Aligned_cols=107 Identities=11% Similarity=0.094 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
.+-++|..|+..|+|++|+.+|.++|+++|++..++..+|.+|..+|++++|+..|+++++++|.+...+..+..++..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999888665554443333222
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS 731 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~ 731 (1166)
+..+ ...+++++|+.+|++++..++..
T Consensus 86 -------------g~~~--~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 86 -------------GNSY--FKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp -------------HHHH--HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred -------------HHHH--HHhCCHHHHHHHHHHHHhcCCCH
Confidence 2222 24799999999999999988764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.04 E-value=1.5e-10 Score=114.07 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=87.5
Q ss_pred hHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh----------hchhHHHHHHHHHHHhCCChHHHHH
Q 039706 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL----------RHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l----------Gq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
+..+.+.+.|++|+..|++|++++ |.++.+|+++|.++..+ +++++|+..|++||+++|+++.+|+
T Consensus 4 ~~~~~r~~~fe~A~~~~e~al~~~----P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~ 79 (145)
T d1zu2a1 4 ETEFDRILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 79 (145)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHccHHHHHHHHHHHHhhC----CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence 445667788999999999999999 99999999999999865 4568899999999999999999999
Q ss_pred HHHHHHHHhhC-----------HHHHHHHHHHHHHHhhhhHHhh
Q 039706 916 RRATLYEMIRD-----------YDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 916 ~LA~ay~~lGd-----------yeeAi~~yekALeL~P~~~e~~ 948 (1166)
++|.+|..+|+ |++|+..|+++++++|++....
T Consensus 80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~ 123 (145)
T d1zu2a1 80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 123 (145)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHH
Confidence 99999988764 7899999999999999876543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.01 E-value=4e-10 Score=110.97 Aligned_cols=123 Identities=13% Similarity=0.040 Sum_probs=97.9
Q ss_pred HHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 039706 741 ALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESG 820 (1166)
Q Consensus 741 ~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~ 820 (1166)
.|.+++.|++|+..|+++++++|+++.+ +..+|.+|..++++..+.+..
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~-------------------------~~~~g~~l~~~~~~~~~~e~~------ 54 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADN-------------------------LTRWGGVLLELSQFHSISDAK------ 54 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHH-------------------------HHHHHHHHHHHHHHSCHHHHH------
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHH-------------------------HHHHHHHHHHhhhhhhhhHHH------
Confidence 4567788999999999999999887543 456777777666554444322
Q ss_pred CCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc--------
Q 039706 821 NGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH-------- 892 (1166)
Q Consensus 821 ~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq-------- 892 (1166)
+.+++|+..|++||+++ |.++.+|+++|.+|..+|+
T Consensus 55 --------------------------------~~~~~Ai~~~~kAl~l~----P~~~~a~~~lG~~y~~~g~~~~~~~~~ 98 (145)
T d1zu2a1 55 --------------------------------QMIQEAITKFEEALLID----PKKDEAVWCIGNAYTSFAFLTPDETEA 98 (145)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHHHhc----chhhHHHhhHHHHHHHcccchhhHHHH
Confidence 34678999999999999 9999999999999988764
Q ss_pred ---hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 893 ---ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 893 ---~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
|.+|+.+|++||+++|++..++..++.+....+.+.++
T Consensus 99 ~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 99 KHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998888887555544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1e-09 Score=104.97 Aligned_cols=114 Identities=5% Similarity=-0.050 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC---ChHHHHHHHHHHHhccccC
Q 039706 796 LIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG---RHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 796 lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G---~yeEAie~y~kALel~~e~ 872 (1166)
.++..+...+++++|.+.|++++..+ +....++.++|.+++..+ ++.+|+..|++++..++
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~--------------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~-- 67 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG--------------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-- 67 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--------------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC--------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC--
Confidence 36778889999999999999985433 345677888899998644 56679999999998761
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR 925 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG 925 (1166)
.+....+|+++|.+|..+|++++|+.+|+++|+++|++..|+..++.+...+.
T Consensus 68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 13446699999999999999999999999999999999999999988876653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=5.1e-09 Score=95.24 Aligned_cols=86 Identities=13% Similarity=-0.047 Sum_probs=75.7
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhcccc---CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE---SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e---~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
...+.+|.++++.|+|.+|+.+|++|+++.+. ..+..+.++.++|.+|.++|++++|+.+|+++|+++|+++.++.+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 44567899999999999999999999998642 344567899999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 039706 917 RATLYEMIR 925 (1166)
Q Consensus 917 LA~ay~~lG 925 (1166)
++.+...++
T Consensus 86 l~~~~~~l~ 94 (95)
T d1tjca_ 86 LKYFEYIMA 94 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 988776554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.80 E-value=2.9e-08 Score=98.01 Aligned_cols=113 Identities=15% Similarity=0.234 Sum_probs=72.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 039706 736 EMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALE 815 (1166)
Q Consensus 736 ~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~le 815 (1166)
+..|..++..|+|++|+..|+++|++.|..+.... .. ....
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~----------~~---~~~~-------------------------- 53 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA----------FD---HAGF-------------------------- 53 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC----------CC---HHHH--------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh----------cc---cchh--------------------------
Confidence 34488899999999999999999999998754310 00 0001
Q ss_pred HHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc-------cCCchhHHHHHHHHHHHH
Q 039706 816 RHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV-------ESHPFAAICFCNRAAAYK 888 (1166)
Q Consensus 816 kAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~-------e~~p~~a~a~~nlA~ay~ 888 (1166)
.+..+.++|.+|..+|+|++|+..|+++|.+.+ ...+....+|+++|.+|.
T Consensus 54 ----------------------~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~ 111 (156)
T d2hr2a1 54 ----------------------DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALD 111 (156)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHH
Confidence 122233445555566666666666666655432 112234456778888888
Q ss_pred HhhchhHHHHHHHHHHHhCCC
Q 039706 889 ALRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 889 ~lGq~eeAi~~lekALeldP~ 909 (1166)
.+|++++|+.+|++|+++.|.
T Consensus 112 ~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 112 GLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 888888888888888887653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=9.3e-08 Score=86.63 Aligned_cols=73 Identities=7% Similarity=-0.132 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDF-------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~-------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
-.|++|.+++..|+|.+|+..|++|+++.|.. ..++..+|.+|.++|++++|+.+|+++|+++|++..+...+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 45789999999999999999999999986543 68899999999999999999999999999999986654443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.58 E-value=2.5e-07 Score=93.95 Aligned_cols=112 Identities=20% Similarity=0.160 Sum_probs=97.7
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC------------------CchhHHHHHHHHHHHHHhhchhHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES------------------HPFAAICFCNRAAAYKALRHITDAI 897 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~------------------~p~~a~a~~nlA~ay~~lGq~eeAi 897 (1166)
......+...|..+...|++++|+..|.+||.+.+.. .+....++.+++.++..+|++++|+
T Consensus 8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 3456677888999999999999999999999986421 0123467889999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 898 ADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 898 ~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
.++++++.++|.+..+|..++.+|..+|++.+|+..|+++.....+....
T Consensus 88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~ 137 (179)
T d2ff4a2 88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI 137 (179)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999887766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.54 E-value=1.2e-05 Score=84.48 Aligned_cols=216 Identities=14% Similarity=0.019 Sum_probs=143.4
Q ss_pred cchhHHHHHHHHHhchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHH
Q 039706 592 PNLASAETIAAQEACEKWRLSNRAATRMA----LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDASK 663 (1166)
Q Consensus 592 p~~A~a~~~aAIe~~e~~ay~nrA~ayl~----lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeAl~ 663 (1166)
...|..++..|.+.-...+++++|.+|.. ..++..|+..+..+... .++.+...+|.++.. ..+.+.|..
T Consensus 18 ~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~ 95 (265)
T d1ouva_ 18 FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQ 95 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccccccccccchhhHHHHH
Confidence 34455677777888888889999999998 77999999999998764 578889999998876 468899999
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHH--HhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 664 YFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLL--QNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEA 741 (1166)
Q Consensus 664 ~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l--~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~ 741 (1166)
.|+++....+.... ..+.... ..........|+..+.+.... .....+..+|.+
T Consensus 96 ~~~~a~~~g~~~a~----------------------~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~L~~~ 151 (265)
T d1ouva_ 96 YYSKACDLKYAEGC----------------------ASLGGIYHDGKVVTRDFKKAVEYFTKACDL--NDGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHTTCHHHH----------------------HHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHhhhhhhhhhhHH----------------------HhhcccccCCCcccchhHHHHHHhhhhhcc--cccchhhhhhhh
Confidence 99999886654110 0111111 112345666777777665443 345566666666
Q ss_pred HHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 039706 742 LFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGN 821 (1166)
Q Consensus 742 y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~ 821 (1166)
|...... ..+...+..+++.+..
T Consensus 152 ~~~~~~~-------------------------------------------------------~~~~~~~~~~~~~a~~-- 174 (265)
T d1ouva_ 152 YDAGRGT-------------------------------------------------------PKDLKKALASYDKACD-- 174 (265)
T ss_dssp HHHTSSS-------------------------------------------------------CCCHHHHHHHHHHHHH--
T ss_pred hccCCCc-------------------------------------------------------ccccccchhhhhcccc--
Confidence 5441110 1122233333333211
Q ss_pred CCchhhhhhhhccchHHHHHHhhhhHHHHH----cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH----hhch
Q 039706 822 GGKMLESLIPLAGTVRELLCRKSAGNEAFQ----AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA----LRHI 893 (1166)
Q Consensus 822 ~~k~le~a~~L~~~~~~a~~l~~lG~~~~~----~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~ 893 (1166)
.....++.++|..+.. ..++++|+.+|+++.+.. ++.+++++|.+|.. .+++
T Consensus 175 --------------~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g------~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 175 --------------LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE------NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp --------------TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHTTSSSSCCS
T ss_pred --------------ccccccccchhhhcccCcccccchhhhhhhHhhhhccc------CHHHHHHHHHHHHcCCCCccCH
Confidence 1123344556766665 568999999999998753 56788899999885 3478
Q ss_pred hHHHHHHHHHHHhCCCh
Q 039706 894 TDAIADCNLAIALDGNY 910 (1166)
Q Consensus 894 eeAi~~lekALeldP~~ 910 (1166)
.+|+.+|++|..+....
T Consensus 235 ~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 235 KQAIENFKKGCKLGAKG 251 (265)
T ss_dssp TTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHCcCHH
Confidence 89999999998887544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.44 E-value=1.7e-07 Score=101.17 Aligned_cols=133 Identities=11% Similarity=0.024 Sum_probs=101.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~ 694 (1166)
+.-.+..|++++|+..|+++|+.+|++..++..+|.+|..+|++++|+..|+++++++|+.......+..+...
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a------ 76 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 76 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh------
Confidence 45678899999999999999999999999999999999999999999999999999999865443333222111
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 695 VSECMQRSAQLLQNKTSNDAEIALGVIDEA-LFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 695 ~~e~~~~a~~~l~~~~~gd~eeALe~lekA-Lel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
.+...+++..+... +...|.....+...+.++...|++++|+..+++++++.|.....+
T Consensus 77 ----------------~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 77 ----------------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp ----------------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ----------------ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 11112222211111 122456667788889999999999999999999999999876554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.24 E-value=6e-07 Score=96.73 Aligned_cols=131 Identities=15% Similarity=0.041 Sum_probs=111.3
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHH
Q 039706 800 SYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAIC 879 (1166)
Q Consensus 800 ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a 879 (1166)
-.+..|++++|+..|+++++ ..+.++..+..+|.+|...|++++|+..|+++++++ |....+
T Consensus 5 ~aL~~G~l~eAl~~l~~al~--------------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~----P~~~~~ 66 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIK--------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF----PEYLPG 66 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----GGGHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCcHHH
Confidence 35678999999999999844 444557778888999999999999999999999998 889999
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHH-hCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 880 FCNRAAAYKALRHITDAIADCNLAIA-LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 880 ~~nlA~ay~~lGq~eeAi~~lekALe-ldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+..++.++...+...++...+.+... .+|....+++.++.++...|++++|...+++++++.|.....+
T Consensus 67 ~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 67 ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 99999999888888887776655433 3577778888899999999999999999999999998876544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.16 E-value=8.4e-06 Score=82.32 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
..|++++|+.++++++.++|.+..+|..++.+|..+|++.+|+..|+++...
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~ 130 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 130 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999998654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.41 E-value=0.00045 Score=64.87 Aligned_cols=80 Identities=9% Similarity=-0.026 Sum_probs=57.2
Q ss_pred HHHhhhhHHHHHcC---ChHHHHHHHHHHHhccccCCchh-HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 840 LCRKSAGNEAFQAG---RHSEAVEHYTAALSCTVESHPFA-AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G---~yeEAie~y~kALel~~e~~p~~-a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
...++.|.++.+.. +..+||.++++++..+ |.. ..+|+++|.+|.++|+|++|+.+++++|+++|++..|..
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~----p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC----chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 44455566666554 3457888888888765 443 478888888888888888888888888888888887776
Q ss_pred HHHHHHHH
Q 039706 916 RRATLYEM 923 (1166)
Q Consensus 916 ~LA~ay~~ 923 (1166)
.+-.+..+
T Consensus 112 L~~~Ie~~ 119 (124)
T d2pqrb1 112 LKSMVEDK 119 (124)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.31 E-value=0.0007 Score=63.57 Aligned_cols=71 Identities=11% Similarity=-0.112 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHH
Q 039706 610 RLSNRAATRMALG---RMRDALSDCMLAVAIDPDFL-RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQK 680 (1166)
Q Consensus 610 ay~nrA~ayl~lG---~y~eAI~~fekALeldP~~~-~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~ 680 (1166)
.-|+.|.++..-. +.++||..++.++..+|... ++++.||.+|+++|+|++|+.+++++|+++|++..+..
T Consensus 37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 3477788887654 56799999999999999774 79999999999999999999999999999999765443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.28 E-value=0.00042 Score=65.50 Aligned_cols=109 Identities=13% Similarity=-0.015 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHH
Q 039706 806 RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAA 885 (1166)
Q Consensus 806 d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ 885 (1166)
++++|+.+|+++...... .....+|. ....++++|+.+|+++.+. .++.+.+++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~----------------~a~~~l~~--~~~~~~~~a~~~~~~aa~~------g~~~a~~~Lg~ 63 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM----------------FGCLSLVS--NSQINKQKLFQYLSKACEL------NSGNGCRFLGD 63 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT----------------THHHHHHT--CTTSCHHHHHHHHHHHHHT------TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh----------------hhhhhhcc--ccccCHHHHHHHHhhhhcc------cchhhhhhHHH
Confidence 678999999997443221 11111221 2346899999999999874 46778899999
Q ss_pred HHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHH
Q 039706 886 AYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEM----IRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 886 ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~----lGdyeeAi~~yekALeL 940 (1166)
+|.. ..++.+|+.+|+++.+. .++.+.+.||.+|.. ..++.+|+.+|++|.++
T Consensus 64 ~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 64 FYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 9886 45789999999999876 478899999999987 56899999999999875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.73 E-value=0.0065 Score=56.89 Aligned_cols=111 Identities=7% Similarity=0.031 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHH
Q 039706 623 RMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRS 702 (1166)
Q Consensus 623 ~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a 702 (1166)
++++|+.+|+++.+.. +..+++.|+. ....++++|+.+|+++.+.+- +.+. ..+
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~--~~a~--------------------~~L 61 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELNS--GNGC--------------------RFL 61 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTC--HHHH--------------------HHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcccc--hhhh--------------------hhH
Confidence 4556666666665543 3344444443 223456666666666655321 1110 011
Q ss_pred HHHHH--hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHh
Q 039706 703 AQLLQ--NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM----LRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 703 ~~~l~--~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~----lGdyeeAi~~lekALel 761 (1166)
..++. .....++.+|+.+|+++.+. .++.+.+.+|.+|.. ..++.+|+.+|+++.++
T Consensus 62 g~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 62 GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 11111 11245566777777776654 345666777777766 45777777777777655
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=1.7 Score=48.10 Aligned_cols=286 Identities=9% Similarity=-0.057 Sum_probs=137.7
Q ss_pred HHHHHHHHhchHHHHHHHH-----HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 597 AETIAAQEACEKWRLSNRA-----ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 597 a~~~aAIe~~e~~ay~nrA-----~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
+.+..-|...+.|...++. ..+...+++...+..| ...|......+.++.++...|+..+|...+..+-..
T Consensus 56 ~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 3444555655555433222 2445566776655444 236788888899999999999999999888776654
Q ss_pred CCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHH
Q 039706 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEV 751 (1166)
Q Consensus 672 ~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeA 751 (1166)
....+.....+........ .......+.++..++. .+++..|...+.. +.+....+...+..++. +...+
T Consensus 132 ~~~~p~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~---~~~~~~a~~l~~~---l~~~~~~~~~a~~~l~~---~p~~~ 201 (450)
T d1qsaa1 132 GKSQPNACDKLFSVWRASG-KQDPLAYLERIRLAMK---AGNTGLVTVLAGQ---MPADYQTIASAIISLAN---NPNTV 201 (450)
T ss_dssp SSCCCTHHHHHHHHHHHTT-CSCHHHHHHHHHHHHH---TTCHHHHHHHHHT---CCGGGHHHHHHHHHHHH---CGGGH
T ss_pred CCCCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH---cCChhhHHHHHhh---CChhHHHHHHHHHHHHh---ChHhH
Confidence 3332211111111111100 0111223333333332 4555555543322 11111111111111110 01111
Q ss_pred HHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhh
Q 039706 752 IQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIP 831 (1166)
Q Consensus 752 i~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~ 831 (1166)
.. .....+.. ... ..+...+..-....+.+.|+..+........
T Consensus 202 ~~----~~~~~~~~----------------~~~-------~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~--------- 245 (450)
T d1qsaa1 202 LT----FARTTGAT----------------DFT-------RQMAAVAFASVARQDAENARLMIPSLAQAQQ--------- 245 (450)
T ss_dssp HH----HHHHSCCC----------------HHH-------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT---------
T ss_pred HH----HHhcCCCC----------------hhh-------hHHHHHHHHHHhccChhHHHHHHHhhhhccc---------
Confidence 10 01111100 000 0011233333445677888887776421111
Q ss_pred hccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 832 LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 832 L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
+ ...........++..+...+....|...+....... ...... ..++......+++..+...+...-.-.....
T Consensus 246 ~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~-~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~ 319 (450)
T d1qsaa1 246 L-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS----QSTSLI-ERRVRMALGTGDRRGLNTWLARLPMEAKEKD 319 (450)
T ss_dssp C-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC----CCHHHH-HHHHHHHHHHTCHHHHHHHHHHSCTTGGGSH
T ss_pred c-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc----cchHHH-HHHHHHHHHcCChHHHHHHHHhcCcccccHH
Confidence 1 011111112222333445566777777776665432 222222 2233334556788888777765432223346
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
...+-+|.++..+|+.++|...|..+.
T Consensus 320 r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 320 EWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 777889999999999999998888875
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.63 E-value=3.2 Score=44.33 Aligned_cols=177 Identities=9% Similarity=-0.004 Sum_probs=94.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchh-hhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSEST-KHVS 788 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~-~~~~ 788 (1166)
..|.++..+.+++.++...+.....+..++.+|.+.+ .++-++.+... .... +..... ....
T Consensus 111 ~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~----s~~y------------~~~k~~~~c~~ 173 (336)
T d1b89a_ 111 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF----WSRV------------NIPKVLRAAEQ 173 (336)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH----STTS------------CHHHHHHHHHT
T ss_pred HcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc----cccC------------CHHHHHHHHHH
Confidence 4689999999999999888888888888888776653 44545544332 1100 111110 0001
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhc
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel 868 (1166)
... |.-+..+|...|++++|+..+-........ .... -..+.+..+.+..-+...-.|+.
T Consensus 174 ~~l--~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~--~~~f----------------~e~~~k~~N~e~~~~~i~~yL~~ 233 (336)
T d1b89a_ 174 AHL--WAELVFLYDKYEEYDNAIITMMNHPTDAWK--EGQF----------------KDIITKVANVELYYRAIQFYLEF 233 (336)
T ss_dssp TTC--HHHHHHHHHHTTCHHHHHHHHHHSTTTTCC--HHHH----------------HHHHHHCSSTHHHHHHHHHHHHH
T ss_pred cCC--hHHHHHHHHhcCCHHHHHHHHHHcchhhhh--HHHH----------------HHHHHccCChHHHHHHHHHHHHc
Confidence 112 234667788899999998887652111110 0001 11122222222222222222221
Q ss_pred cccCCchhHHH----------HHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHH
Q 039706 869 TVESHPFAAIC----------FCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 869 ~~e~~p~~a~a----------~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyee 929 (1166)
. |....- ...+-....+.+++.-...+++.+... +.......++.+|...+|++.
T Consensus 234 ~----p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 234 K----PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp C----GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHH
T ss_pred C----HHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhHH
Confidence 1 111100 011223445667777777777775543 345678889999999999744
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.39 E-value=9.4 Score=41.62 Aligned_cols=277 Identities=12% Similarity=-0.039 Sum_probs=147.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPD------------------FLRVQVRAANCHLALGEIEDASKYFRMCLQSGS 673 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~------------------~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P 673 (1166)
+..+.+++..|+-.+|+..+..+...... ...-+......++..|++..|...+.. +.+
T Consensus 106 c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~---l~~ 182 (450)
T d1qsaa1 106 CNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ---MPA 182 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT---CCG
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhh---CCh
Confidence 45677788889999988877766543221 233444556666677777777665542 122
Q ss_pred CchhHHHHHHHHHHHhhhH-HhHHH----------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHH----
Q 039706 674 DVCVDQKIAVEASDGLQKA-QKVSE----------CMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMK---- 738 (1166)
Q Consensus 674 ~n~~a~~~l~Ea~~~L~k~-~~~~e----------~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~l---- 738 (1166)
+. ..+..+...+... ..+.. ....+...+......+.+.|+..+.......+.....+...
T Consensus 183 ~~----~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 258 (450)
T d1qsaa1 183 DY----QTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIV 258 (450)
T ss_dssp GG----HHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hH----HHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHH
Confidence 21 1111111111110 01000 00011111112224567778877777666554443322222
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 739 AEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 739 A~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
+..++..+..+.|...+.......... ....| .++. .+..+++..+...+....
T Consensus 259 a~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------~~~~w---~~~~-al~~~~~~~~~~~~~~l~ 312 (450)
T d1qsaa1 259 AWRLMGNDVTDEQAKWRDDAIMRSQST----------------------SLIER---RVRM-ALGTGDRRGLNTWLARLP 312 (450)
T ss_dssp HHTSCSTTCCHHHHHHHHHHHHTCCCH----------------------HHHHH---HHHH-HHHHTCHHHHHHHHHHSC
T ss_pred HHHHHHcCchHHHHHHHHhhcccccch----------------------HHHHH---HHHH-HHHcCChHHHHHHHHhcC
Confidence 222233455666666665544321100 01112 1222 345678888888877631
Q ss_pred cCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc--------------c-------cCCc---
Q 039706 819 SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT--------------V-------ESHP--- 874 (1166)
Q Consensus 819 ~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~--------------~-------e~~p--- 874 (1166)
. .........+-+|..+...|+.++|...|..+.... . ...+
T Consensus 313 ---~-----------~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~ 378 (450)
T d1qsaa1 313 ---M-----------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSA 378 (450)
T ss_dssp ---T-----------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCH
T ss_pred ---c-----------ccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHh
Confidence 0 011112333556888899999999998888875421 0 0000
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
.....-..++..+..+|+...|...+..++..- +..-...+|.+....|.++.|+....++
T Consensus 379 ~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 011122356777888888888888887776432 3556667788888888888888776654
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=85.16 E-value=12 Score=37.51 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCC-chhHHHHHHHHH
Q 039706 639 PDFLRVQVRAANCHLALGEIEDASKYFRMCLQS--GSD-VCVDQKIAVEAS 686 (1166)
Q Consensus 639 P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel--~P~-n~~a~~~l~Ea~ 686 (1166)
|..-+-++.+|.+..+.++|++.+.+.+++++. +|. +...+.++.-++
T Consensus 1 ~~~Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvay 51 (236)
T d1o9da_ 1 PTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY 51 (236)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 334456788899999999999999999999886 454 333444444433
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.51 E-value=18 Score=36.00 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 643 RVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 643 ~A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
+-++.+|.+..+.++|++.+.+.+++++.++.
T Consensus 4 e~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~e 35 (230)
T d2o02a1 4 NELVQKAKLAEQAERYDDMAACMKSVTEQGAE 35 (230)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCC
Confidence 34677888889999999999999998888776
|