Citrus Sinensis ID: 039723

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MNKLLKRPAEILRCTVTEPAVKLSDVKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSNDFAVSVVEKKAKAKGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLIESDPLMN
Secondary Structure (PSIPRED)
cccccccHHHHHHccccccccEEccccccccccHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHccccccccccHHHHHHHccccEEEEccccccccccEEccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccEEEEcccccccccccccccccEEEcccccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccEEEEEEccEEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHHHHcccccHHHHHHHHcccHEEEEccccccccccEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEcccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHcccEEEEEcccccEEEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MNKLLKRPAEILRctvtepavklsdvkwirdRGLDHAVAREKNLKPLLNIKNliksepskslpitiitqqkdslqipirpmefirrypsvfqeflpgnvgvqphikltpevldidadeQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKwdlglpddfltslvpdfpdyfravgyqnkhercsgfdlfGELELVCWSNDFAVSVVEKKAkakgidgenimfsmnfssgfEIDKKMKKWMDnwqklpyispyenathllpksdesdKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRAllnhpgifyvsnksgMYTVVLKEAYkrgsliesdplmn
Flexible Loop (DISEMBL)
mnkllkrpaeilrctvtepavklsdvkwiRDRGLDHavareknlkpllniknliksepskslpitiitqqkdslqipiRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSNDFAVSVVEKKAkakgidgenimfsMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIfyvsnksgMYTVVLKEAykrgsliesdplmn
Low Complexity Region (SEG)
MNKLLKRPAEILRCTVTEPAVKLSDVKWIRDRGLDHAVAREknlkpllniknlikSEPSKSLPITIITQQKDSLQIPIRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSNDFavsvvekkakakGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLIESDPLMN
Disordered region (IsUnstruct)
********AEILRCTVTEPAVKLSDVKWIRDRGLDHAVAREKNLKPLLNIKNLIK*****SLPITIITQQKDSLQIPIRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSNDFAVSVVEKKAKAKGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKR***********
Disordered Region (DISOPRED)
***************************WIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSNDFAVSV****************FSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENAT*******ESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLIESDPL**
Disordered Region (DISEMBL)
MNKLLKRPAEILRCTVTEPAVKLSDVKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSNDFAVSVVEKKAKAKGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLIESDPLMN
Disordered Region (DISPRO)
***LLKRPAEILRCTVTEPAVKLSDVKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSNDFAVSVVEKKAKAKGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLIES*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKLLKRPAEILRCTVTEPAVKLSDVKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSNDFAVSVVEKKAKAKGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLIESDPLMN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
224135891	429	predicted protein [Populus trichocarpa]	0.934	0.762	0.642	1e-122
449467763	550	PREDICTED: uncharacterized protein LOC10	0.92	0.585	0.612	1e-122
449479946	510	PREDICTED: uncharacterized LOC101219683	0.92	0.631	0.612	1e-122
297841935	469	hypothetical protein ARALYDRAFT_476308 [	0.928	0.692	0.621	1e-120
3413424	470	hypothetical protein [Arabidopsis thalia	0.905	0.674	0.628	1e-120
15217597	470	ubiquitin carboxyl-terminal hydrolase-li	0.905	0.674	0.628	1e-120
255586815	514	conserved hypothetical protein [Ricinus	0.971	0.661	0.589	1e-120
359478161	660	PREDICTED: uncharacterized protein LOC10	0.92	0.487	0.591	1e-115
147780316	744	hypothetical protein VITISV_018330 [Viti	0.922	0.434	0.586	1e-113
356502313	543	PREDICTED: uncharacterized protein LOC10	0.88	0.567	0.539	1e-99

>gi|224135891|ref|XP_002327329.1| predicted protein [Populus trichocarpa] gi|222835699|gb|EEE74134.1| predicted protein [Populus trichocarpa]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/333 (64%), Positives = 273/333 (81%), Gaps = 6/333 (1%)

Query: 21  VKLSDVKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRP 80
           V  + +K +RDRGLDHAV REK+LKP+L+IKNLIKSEPS+SLPI+I+TQQKD L+IPIRP
Sbjct: 21  VDFAAIKHVRDRGLDHAVEREKHLKPVLSIKNLIKSEPSRSLPISIVTQQKDFLKIPIRP 80

Query: 81  MEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLM 140
           +E IRRYPSVFQEFLPG +G+ PH+KLT +VLD+D +EQLVYQS+SY+  VA RLLKLLM
Sbjct: 81  IELIRRYPSVFQEFLPGGIGIHPHVKLTQQVLDLDIEEQLVYQSESYKNDVANRLLKLLM 140

Query: 141 ISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELEL 200
           IS+++KI L ++D L WDLGLP D + SLVP+FPDYFR +G +N     SG DL   LEL
Sbjct: 141 ISRIDKIPLKLLDFLLWDLGLPQDCVKSLVPEFPDYFRVLGDKNLSP-WSGSDL--GLEL 197

Query: 201 VCWSNDFAVSVVEKKAKAKG---IDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISP 257
           VCWS++ AVSV+EK+AK++    + G  I F M FS GFEIDK++K+W+ +WQKLPY+SP
Sbjct: 198 VCWSDELAVSVMEKRAKSRETGYVKGMPIEFPMQFSKGFEIDKRLKQWIGDWQKLPYVSP 257

Query: 258 YENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHP 317
           YENA HL P +DESD+WAV ++HEV++L  ++KVE++ LLC G +LGIRS FKRALL+HP
Sbjct: 258 YENAMHLGPNTDESDRWAVGVLHEVLNLSVSKKVEKDTLLCLGEWLGIRSRFKRALLHHP 317

Query: 318 GIFYVSNKSGMYTVVLKEAYKRGSLIESDPLMN 350
           GIFY+SNK G YTVVLKE YKRG L+E +P+++
Sbjct: 318 GIFYLSNKIGTYTVVLKEGYKRGLLVEKNPVVD 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467763|ref|XP_004151592.1| PREDICTED: uncharacterized protein LOC101219683 [Cucumis sativus]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 201/328 (61%), Positives = 264/328 (80%), Gaps = 6/328 (1%)

Query: 26  VKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIR 85
           + W+RDRGLDHAV REKNL P++NIK+ IKSEPSKS+P++IITQ+++ L+IP RP++ IR
Sbjct: 34  INWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPLSIITQKREILRIPTRPIDLIR 93

Query: 86  RYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMN 145
           +YPS+F+EFLPG +G+QPH+KLT +VL++DA+EQL YQ+ + RQ  A RL+KLLM+S+++
Sbjct: 94  KYPSIFEEFLPGGIGIQPHVKLTSKVLELDAEEQLTYQTSTCRQQAADRLVKLLMLSRVH 153

Query: 146 KITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSN 205
           K+ +++ID LKWDLGLP D++ S+VPDFPDYF+ VG+QN     SG      LELVCW+N
Sbjct: 154 KVPVSIIDQLKWDLGLPKDYVESIVPDFPDYFKVVGHQNF---ASGSGDMRVLELVCWNN 210

Query: 206 DFAVSVVEK---KAKAKGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENAT 262
           + A SV+EK   K K     G  I F M +S+GFE+DKK KKW+D WQKLPYISPYENA+
Sbjct: 211 ELATSVIEKMAVKVKPDKSKGMYITFPMKYSNGFEMDKKFKKWVDEWQKLPYISPYENAS 270

Query: 263 HLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYV 322
           HL P SDESDKW VAI+HE++ +   +K E+E +LC G Y G+RS FKRALL+HPGIFY+
Sbjct: 271 HLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFGLRSRFKRALLHHPGIFYI 330

Query: 323 SNKSGMYTVVLKEAYKRGSLIESDPLMN 350
           S+K+G YTVVLKE YKRGS++ES+PLMN
Sbjct: 331 SSKAGTYTVVLKEGYKRGSVVESNPLMN 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479946|ref|XP_004155755.1| PREDICTED: uncharacterized LOC101219683 [Cucumis sativus]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 201/328 (61%), Positives = 264/328 (80%), Gaps = 6/328 (1%)

Query: 26  VKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIR 85
           + W+RDRGLDHAV REKNL P++NIK+ IKSEPSKS+P++IITQ+++ L+IP RP++ IR
Sbjct: 34  INWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPLSIITQKREILRIPTRPIDLIR 93

Query: 86  RYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMN 145
           +YPS+F+EFLPG +G+QPH+KLT +VL++DA+EQL YQ+ + RQ  A RL+KLLM+S+++
Sbjct: 94  KYPSIFEEFLPGGIGIQPHVKLTSKVLELDAEEQLTYQTSTCRQQAADRLVKLLMLSRVH 153

Query: 146 KITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSN 205
           K+ +++ID LKWDLGLP D++ S+VPDFPDYF+ VG+QN     SG      LELVCW+N
Sbjct: 154 KVPVSIIDQLKWDLGLPKDYVESIVPDFPDYFKVVGHQNF---ASGSGDMRVLELVCWNN 210

Query: 206 DFAVSVVEK---KAKAKGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENAT 262
           + A SV+EK   K K     G  I F M +S+GFE+DKK KKW+D WQKLPYISPYENA+
Sbjct: 211 ELATSVIEKMAVKVKPDKSKGMYITFPMKYSNGFEMDKKFKKWVDEWQKLPYISPYENAS 270

Query: 263 HLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYV 322
           HL P SDESDKW VAI+HE++ +   +K E+E +LC G Y G+RS FKRALL+HPGIFY+
Sbjct: 271 HLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFGLRSRFKRALLHHPGIFYI 330

Query: 323 SNKSGMYTVVLKEAYKRGSLIESDPLMN 350
           S+K+G YTVVLKE YKRGS++ES+PLMN
Sbjct: 331 SSKAGTYTVVLKEGYKRGSVVESNPLMN 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841935|ref|XP_002888849.1| hypothetical protein ARALYDRAFT_476308 [Arabidopsis lyrata subsp. lyrata] gi|297334690|gb|EFH65108.1| hypothetical protein ARALYDRAFT_476308 [Arabidopsis lyrata subsp. lyrata]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/341 (62%), Positives = 278/341 (81%), Gaps = 16/341 (4%)

Query: 15  TVTEPAVKLSDV-KWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDS 73
           T ++ AV+  DV K++RDRGLDHAV REKNL+PLL+IK+LI+SEP+KS+PI++IT +KDS
Sbjct: 18  TFSDTAVE--DVYKFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITTKKDS 75

Query: 74  LQIPIRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAG 133
           L++P+RP+EFIR +PSVFQEFLPG +G+ PHI LTPE+L++DADEQLVY S+SY+Q +A 
Sbjct: 76  LRVPLRPIEFIRSFPSVFQEFLPGGIGIHPHISLTPEILNLDADEQLVYGSESYKQGLAD 135

Query: 134 RLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFD 193
           RLLKLLMI+++NKI L ++DLLKWDLGLP D++ ++VP+FPDYFR +  ++K   CS   
Sbjct: 136 RLLKLLMINRINKIPLEILDLLKWDLGLPQDYVETMVPEFPDYFRVI--KSKLRGCS--- 190

Query: 194 LFGELELVCWSNDFAVSVVEKKAKAKGIDGE-----NIMFSMNFSSGFEIDKKMKKWMDN 248
             GELELVCWSND AVSV+EKKA+  G  GE      I F M FS+GF +DKKMKKW+D+
Sbjct: 191 --GELELVCWSNDHAVSVLEKKARTIG-KGEYKKESAIAFPMKFSNGFVVDKKMKKWIDD 247

Query: 249 WQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSW 308
           WQKLPYISPYENA HL   SDESDKWA A++HE+++LF ++KVE++ +L  G ++G+RS 
Sbjct: 248 WQKLPYISPYENALHLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSR 307

Query: 309 FKRALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLIESDPLM 349
           FKR L NHPGIFY+S+K   +TVVL++ YKRG LIES+ L+
Sbjct: 308 FKRVLHNHPGIFYLSSKLRTHTVVLRDGYKRGMLIESNELV 348

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3413424|emb|CAA06977.1| hypothetical protein [Arabidopsis thaliana]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 269/328 (82%), Gaps = 11/328 (3%)

Query: 27  KWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIRR 86
           K++RDRGLDHAV REKNL+PLL+IK+LI+SEP+KS+PI++IT QKDSL++P+RP+EFIR 
Sbjct: 30  KFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVPLRPIEFIRS 89

Query: 87  YPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNK 146
           +PSVFQEFLPG +G+ PHI LTPE+L+ DADEQLVY S++Y+Q +A RLLKLLMI+++NK
Sbjct: 90  FPSVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMINRINK 149

Query: 147 ITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSND 206
           I L ++DLLKWDLGLP D++ ++VP+FPDYFR +  ++K   CS     GELELVCWSN+
Sbjct: 150 IPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVI--KSKLRGCS-----GELELVCWSNE 202

Query: 207 FAVSVVEKKAKA--KG--IDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENAT 262
            AVSV+EKKA+   KG    G  I F M FS+GF +DKKMKKW+D+WQKLPYISPYENA 
Sbjct: 203 HAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYENAL 262

Query: 263 HLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYV 322
           HL   SDESDKWA A++HE+++LF ++KVE++ +L  G ++G+RS FKR L NHPGIFY+
Sbjct: 263 HLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNHPGIFYL 322

Query: 323 SNKSGMYTVVLKEAYKRGSLIESDPLMN 350
           S+K   +TVVL++ YKRG LIES+ L+ 
Sbjct: 323 SSKLRTHTVVLRDGYKRGMLIESNELVT 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217597|ref|NP_177330.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] gi|7239512|gb|AAF43238.1|AC012654_22 Strong similarity to the higher plant tyrosine-specific protein phosphatases (PTPs) from A. thaliana gi|3413424 expressed during embryogenesis [Arabidopsis thaliana] gi|110741575|dbj|BAE98736.1| hypothetical protein [Arabidopsis thaliana] gi|332197119|gb|AEE35240.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 269/328 (82%), Gaps = 11/328 (3%)

Query: 27  KWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIRR 86
           K++RDRGLDHAV REKNL+PLL+IK+LI+SEP+KS+PI++IT QKDSL++P+RP+EFIR 
Sbjct: 30  KFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVPLRPIEFIRS 89

Query: 87  YPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNK 146
           +PSVFQEFLPG +G+ PHI LTPE+L+ DADEQLVY S++Y+Q +A RLLKLLMI+++NK
Sbjct: 90  FPSVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMINRINK 149

Query: 147 ITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSND 206
           I L ++DLLKWDLGLP D++ ++VP+FPDYFR +  ++K   CS     GELELVCWSN+
Sbjct: 150 IPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVI--KSKLRGCS-----GELELVCWSNE 202

Query: 207 FAVSVVEKKAKA--KG--IDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENAT 262
            AVSV+EKKA+   KG    G  I F M FS+GF +DKKMKKW+D+WQKLPYISPYENA 
Sbjct: 203 HAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYENAL 262

Query: 263 HLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYV 322
           HL   SDESDKWA A++HE+++LF ++KVE++ +L  G ++G+RS FKR L NHPGIFY+
Sbjct: 263 HLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNHPGIFYL 322

Query: 323 SNKSGMYTVVLKEAYKRGSLIESDPLMN 350
           S+K   +TVVL++ YKRG LIES+ L+ 
Sbjct: 323 SSKLRTHTVVLRDGYKRGMLIESNELVT 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586815|ref|XP_002534021.1| conserved hypothetical protein [Ricinus communis] gi|223525972|gb|EEF28362.1| conserved hypothetical protein [Ricinus communis]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/351 (58%), Positives = 266/351 (75%), Gaps = 11/351 (3%)

Query: 11  ILRCTVTEPA-------VKLSDVKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLP 63
           + RC    P        + ++ +K +RDRGLDH V RE +LKP++NIKNLIKSEPSKSLP
Sbjct: 4   LFRCLAKHPRRSYHRSFIDVASIKHLRDRGLDHVVQRENHLKPMINIKNLIKSEPSKSLP 63

Query: 64  ITIITQQKDSLQIPIRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQ 123
           +++ITQ KDSL++PIRP+EFIR+YP +FQEFLPG + + PHIKLT +VLD+DA+EQLVY 
Sbjct: 64  LSVITQHKDSLKVPIRPIEFIRKYPLIFQEFLPGGINIHPHIKLTEQVLDLDAEEQLVYD 123

Query: 124 SQSYRQV-VAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGY 182
           S+SY+   VA R+LKLLMIS+++KI L ++D +KW+LGLP D++  LVP+FPDYFR +G 
Sbjct: 124 SESYKXXNVADRVLKLLMISRIDKIPLKVLDAIKWELGLPQDYVKCLVPEFPDYFRVIGN 183

Query: 183 QNKHERCSGFDLFGELELVCWSNDFAVSVVEKKAKAKGID---GENIMFSMNFSSGFEID 239
            N      G +    LELVCWSN+ AVS +EK+A    I+   G  + F M FS G+E+D
Sbjct: 184 GNHKNLACGLNSDLGLELVCWSNELAVSCIEKQAANGKIEYKKGMPLAFPMKFSKGYEMD 243

Query: 240 KKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCF 299
           K++KKW D+WQKLPYISPYENATHL   +DESDKW V ++HEV++LF ++KVER+ LLC 
Sbjct: 244 KQLKKWSDDWQKLPYISPYENATHLGASTDESDKWTVGVLHEVLNLFVSKKVERDTLLCL 303

Query: 300 GNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLIESDPLMN 350
           G  LGIRS FKRALL+HPGIFY+S K   YTVVL++AYKRG LIE  PL N
Sbjct: 304 GECLGIRSRFKRALLHHPGIFYLSTKMRTYTVVLRDAYKRGLLIEKSPLTN 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478161|ref|XP_002265212.2| PREDICTED: uncharacterized protein LOC100257588 [Vitis vinifera]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/328 (59%), Positives = 263/328 (80%), Gaps = 6/328 (1%)

Query: 26  VKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIR 85
           +K ++DRGL+HAV +E++LKP+LNIKNLIKSEPSKS+PI++I+Q K++L +  RP++FIR
Sbjct: 27  IKRVQDRGLEHAVEKERSLKPMLNIKNLIKSEPSKSVPISLISQNKEALGLWTRPIDFIR 86

Query: 86  RYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMN 145
           R+PS+F+EFLPG + + PH++LTPEVL +D +E  ++Q+++YR+  A RLLKLLM+S++N
Sbjct: 87  RFPSIFEEFLPGGIKIHPHVRLTPEVLSLDGEELSIFQTENYRKQAADRLLKLLMLSRIN 146

Query: 146 KITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSN 205
           KI LT++D LKWDLGLP D++ +LVP+FPDYF+    ++      G  +   LELVCWSN
Sbjct: 147 KIPLTIVDRLKWDLGLPQDYVETLVPEFPDYFQVTSAEDHFSGSRGMRV---LELVCWSN 203

Query: 206 DFAVSVVEKKAKA--KGID-GENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENAT 262
           + A+SV+EKKA A   G + G  I F ++FS GFE+DKKMKKW+D WQKL YISPYENA+
Sbjct: 204 ELAISVMEKKAMAGQGGFEKGMAIAFPLHFSRGFEMDKKMKKWVDEWQKLVYISPYENAS 263

Query: 263 HLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYV 322
           HL PKSDESDKWAV ++HE++ LF  +K ++E +LC G Y+G+RS FKRAL+NHPGIFY+
Sbjct: 264 HLPPKSDESDKWAVGLLHELLHLFVPRKTDKENILCLGEYMGLRSRFKRALVNHPGIFYL 323

Query: 323 SNKSGMYTVVLKEAYKRGSLIESDPLMN 350
           S K+GM+TV+LKEAYKR  LIE  PLM 
Sbjct: 324 STKTGMHTVLLKEAYKRDLLIEKHPLME 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780316|emb|CAN76967.1| hypothetical protein VITISV_018330 [Vitis vinifera]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/329 (58%), Positives = 263/329 (79%), Gaps = 6/329 (1%)

Query: 24  SDVKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEF 83
           + +K ++DRGL+HAV +E++LKP+LNIKNLIKSEPSKS+PI++I+Q K++L +  RP++F
Sbjct: 25  ATIKRVQDRGLEHAVEKERSLKPMLNIKNLIKSEPSKSVPISLISQNKEALGLWTRPIDF 84

Query: 84  IRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQ 143
           IRR+PS+F+EFLPG + + PH++LTPEVL +D +E  ++Q+++YR+  A RLLKLLM+S+
Sbjct: 85  IRRFPSIFEEFLPGGIKIHPHVRLTPEVLSLDGEELSIFQTENYRKQAADRLLKLLMLSR 144

Query: 144 MNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCW 203
           +NKI LT++D LKWDLGLP D++ +LVP+FPDYF+    ++      G  +   LELVCW
Sbjct: 145 INKIPLTIVDRLKWDLGLPQDYVETLVPEFPDYFQVTSAEDHFSGSRGMRV---LELVCW 201

Query: 204 SNDFAVSVVEKKAKA--KGID-GENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYEN 260
           SN+ A+SV+EKKA A   G + G  I F ++FS GFE+DKKMKKW+D WQKL YISPYEN
Sbjct: 202 SNELAISVMEKKAMAGQGGFEKGMAIAFPLHFSRGFEMDKKMKKWVDEWQKLVYISPYEN 261

Query: 261 ATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIF 320
           A+HL PKSDESDKWAV ++HE++ LF  +K ++E +LC G Y+G+RS FKRAL+N PGIF
Sbjct: 262 ASHLPPKSDESDKWAVGLLHELLHLFVPRKTDKENILCLGEYMGLRSRFKRALVNXPGIF 321

Query: 321 YVSNKSGMYTVVLKEAYKRGSLIESDPLM 349
           Y+S K+GM+TV+LKEAYKR  LIE  PLM
Sbjct: 322 YLSTKTGMHTVLLKEAYKRDLLIEKHPLM 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502313|ref|XP_003519964.1| PREDICTED: uncharacterized protein LOC100794231 [Glycine max]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 176/326 (53%), Positives = 241/326 (73%), Gaps = 18/326 (5%)

Query: 26  VKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIR 85
           VK IRDRGLDHAV RE+NLKPL+++KNLIK EPSKSLP+++I   + SL +P RP+EF+R
Sbjct: 17  VKAIRDRGLDHAVERERNLKPLMSLKNLIKREPSKSLPVSLI---RRSLSLPFRPIEFVR 73

Query: 86  RYPSVFQEFLP-GNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQM 144
           +YPSVF+EFLP  +    PH++LTPE L +D++E L++ S  ++   A RLLKLLMI+++
Sbjct: 74  KYPSVFEEFLPVASAFASPHVRLTPETLLLDSEEHLLHLSDRFKHHAADRLLKLLMIARI 133

Query: 145 NKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWS 204
           +KI L +++ L+WDLGLP D+  ++VPDFPDYFR V          GF     LELVCW 
Sbjct: 134 HKIPLPLVEHLQWDLGLPPDYAETVVPDFPDYFRIV---------DGF-----LELVCWD 179

Query: 205 NDFAVSVVEKKAKAKGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHL 264
            + AVSV++   +   ++ E ++F + FS+G E+DKK +KW+  WQKL Y SPYEN +HL
Sbjct: 180 QNLAVSVIQSDYRNTSVNFEALLFPVQFSNGLEMDKKYEKWLREWQKLSYESPYENLSHL 239

Query: 265 LPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSN 324
              SDESD W V ++HE++ LF  +K+E+E LL FG++LG+RS FKRALL HPG+FY+S+
Sbjct: 240 PSTSDESDVWVVGVLHELLHLFVGKKIEKEMLLEFGDWLGVRSRFKRALLQHPGMFYLSS 299

Query: 325 KSGMYTVVLKEAYKRGSLIESDPLMN 350
           K G YTVVL+E YKRG+LI+  P+MN
Sbjct: 300 KIGTYTVVLREGYKRGALIKDHPVMN 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2012981	470	AT1G71850 "AT1G71850" [Arabido	0.902	0.672	0.571	1e-98
TAIR|locus:2064940	387	WTF9 "AT2G39120" [Arabidopsis	0.36	0.325	0.365	6.6e-39
TAIR|locus:2042561	415	AT2G31290 [Arabidopsis thalian	0.66	0.556	0.325	5.6e-29
TAIR|locus:504955534	409	RPD1 "ROOT PRIMORDIUM DEFECTIV	0.88	0.753	0.291	9.1e-29
TAIR|locus:2009230	390	AT1G06440 [Arabidopsis thalian	0.351	0.315	0.413	9.8e-27
TAIR|locus:2207380	413	AT1G79120 [Arabidopsis thalian	0.751	0.636	0.280	1.7e-22
TAIR|locus:4515103321	528	WTF1 "what's this factor?" [Ar	0.325	0.215	0.315	7.5e-20
TAIR|locus:2166305	494	emb1692 "embryo defective 1692	0.897	0.635	0.252	2.4e-18
TAIR|locus:2138738	395	AT4G08940 [Arabidopsis thalian	0.72	0.637	0.246	2.6e-12

TAIR|locus:2012981 AT1G71850 "AT1G71850" [Arabidopsis thaliana (taxid:3702)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 187/327 (57%), Positives = 244/327 (74%)

Query:    27 KWIRDRGLDHAVAREXXXXXXXXXXXXXXSEPSKSLPITIITQQKDSLQIPIRPMEFIRR 86
             K++RDRGLDHAV RE              SEP+KS+PI++IT QKDSL++P+RP+EFIR 
Sbjct:    30 KFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVPLRPIEFIRS 89

Query:    87 YPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNK 146
             +PSVFQEFLPG +G+ PHI LTPE+L+ DADEQLVY S++Y+Q +A RLLKLLMI+++NK
Sbjct:    90 FPSVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMINRINK 149

Query:   147 ITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSND 206
             I L ++DLLKWDLGLP D++ ++VP+FPDYFR +  ++K   CSG     ELELVCWSN+
Sbjct:   150 IPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVI--KSKLRGCSG-----ELELVCWSNE 202

Query:   207 FXXXXXXXXXXXX--G--IDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENAT 262
                            G    G  I F M FS+GF +DKKMKKW+D+WQKLPYISPYENA 
Sbjct:   203 HAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYENAL 262

Query:   263 HLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYV 322
             HL   SDESDKWA A++HE+++LF ++KVE++ +L  G ++G+RS FKR L NHPGIFY+
Sbjct:   263 HLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNHPGIFYL 322

Query:   323 SNKSGMYTVVLKEAYKRGSLIESDPLM 349
             S+K   +TVVL++ YKRG LIES+ L+
Sbjct:   323 SSKLRTHTVVLRDGYKRGMLIESNELV 349

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2064940 WTF9 "AT2G39120" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 6.6e-39, Sum P(2) = 6.6e-39
 Identities = 46/126 (36%), Positives = 75/126 (59%)

Query:   224 ENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVI 283
             E I F +  S G  +  K++ W+  +QKLPY+SPY++ + L P SD ++K  V  +HE++
Sbjct:   220 EEIEFPLFPSKGCRLRVKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIAEKRVVGFLHELL 279

Query:   284 SLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLI 343
              LF     ER+KLLC   + G+     +A   HP IFY+S K+   T +L+E Y+  + +
Sbjct:   280 CLFVEHSAERKKLLCLKKHFGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASV 339

Query:   344 ESDPLM 349
             E+ P++
Sbjct:   340 ETHPVL 345

GO:0005739 "mitochondrion" evidence=IDA

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0017004 "cytochrome complex assembly" evidence=IMP

TAIR|locus:2042561 AT2G31290 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 80/246 (32%), Positives = 127/246 (51%)

Query:   104 HIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPD 163
             + +LT  ++ +  +E+LV  +Q    V+A RL KLLM+S   ++ +  ++  K   G PD
Sbjct:   101 YCRLTKPMMTLVEEEELVKDTQE--PVLADRLAKLLMLSVNQRLNVVKLNEFKRSFGFPD 158

Query:   164 DFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSNDFXXXXXXXXXXXXGIDG 223
             D++  +VP + D FR V Y  +           E+EL+ W  +             G + 
Sbjct:   159 DYVIRIVPKYSDVFRLVNYSGRKSSM-------EIELLLWKPELAVSAVEAAAKKCGSEP 211

Query:   224 ENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVI 283
                 FS +  S +   K  +++M+ +   PYISPYE+   L+  S ES+K +V ++HE++
Sbjct:   212 S---FSCSLPSTWT--KPWERFME-FNAFPYISPYEDHGDLVEGSKESEKRSVGLVHELL 265

Query:   284 SLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLI 343
             SL   +K+   KL  F    G+       LL HPGIFYV NK  ++TV+L+E Y    LI
Sbjct:   266 SLTLWKKLSIVKLSHFKREFGLPEKLNGMLLKHPGIFYVGNKYQVHTVILREGYNGSELI 325

Query:   344 ESDPLM 349
               DPL+
Sbjct:   326 HKDPLV 331

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:504955534 RPD1 "ROOT PRIMORDIUM DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 96/329 (29%), Positives = 159/329 (48%)

Query:    29 IRDRGLDHAVAREXXXXXXXXXXXXXXSEPSKSLPITIITQQKDSLQIPIR---PMEFIR 85
             +RD G D+ +  E              S+P+ ++ I+++      L +  +   P  F+ 
Sbjct:    47 VRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLL 106

Query:    86 RYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMN 145
             ++P VF E     V    + +LT + LD    E      Q    V   RL KL+M+S   
Sbjct:   107 KFPHVF-EIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVT--RLRKLVMMSNTG 163

Query:   146 KITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAV-GYQNKHERCSGFDLFGELELVCWS 204
             +I L  + + + + GLP+DF  S++   P +FR + G + + +     +    L  +C  
Sbjct:   164 RIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLS-IC-- 220

Query:   205 NDFXXXXXXXXXXXXGIDGENIMFS--MNFSSGFEIDKKMKKWMDNWQKLPYISPYENAT 262
                            GID E++ FS  +NF  GF+I K  +  +  WQ+LPY SPYE+ +
Sbjct:   221 --AIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDIS 278

Query:   263 HLLPKSDES----DKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPG 318
                 +S E+    +K +VA +HE++SL   +K+  E++  F N + +    K  LL H G
Sbjct:   279 GYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQG 338

Query:   319 IFYVSNKSG---MYTVVLKEAYKRGSLIE 344
             IFY+S +     ++TV L+E YKRG L+E
Sbjct:   339 IFYISTRGNYGKLHTVFLREGYKRGELVE 367

GO:0009507 "chloroplast" evidence=ISM

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

TAIR|locus:2009230 AT1G06440 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 9.8e-27, Sum P(2) = 9.8e-27
 Identities = 57/138 (41%), Positives = 76/138 (55%)

Query:   221 IDGENIMFSMNFS--SGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDES----DKW 274
             +D   I FS   S   G  + K  K  +  WQ+LPY+ PYE+      KS       +K 
Sbjct:   227 VDRTEIQFSFKHSYPPGMRLSKTFKAKVKEWQRLPYVGPYEDMVGK-KKSRSGVMGIEKR 285

Query:   275 AVAIMHEVISLFGAQKVEREKLL----CFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYT 330
             AVAI HE ++L   + VE EK+     CFG  L IR  F    L+HPG+FYVS K   +T
Sbjct:   286 AVAIAHEFLNLTVEKMVEVEKISHFRKCFGIDLNIRDLF----LDHPGMFYVSTKGKRHT 341

Query:   331 VVLKEAYKRGSLIESDPL 348
             V L+EAY+RG LI+ +P+
Sbjct:   342 VFLREAYERGRLIDPNPV 359

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2207380 AT1G79120 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 78/278 (28%), Positives = 129/278 (46%)

Query:    81 MEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLM 140
             M  I +YP++F  ++ G     P + LT +   I A+E     ++S   ++   L KLLM
Sbjct:   114 MAAIEKYPTIF--YVGGGHKEPPFVMLTEKAKKIAAEESEA--TESMEPILVNNLRKLLM 169

Query:   141 ISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERC-SGFDLF---- 195
             +S   ++ L  ++ ++  +GLP DF ++L+P + ++F       K       +D      
Sbjct:   170 MSVDCRVPLEKVEFIQSAMGLPQDFKSTLIPKYTEFFSLKVINGKVNLVLENWDSSLAIT 229

Query:   196 ---GELELVCWSNDFXXXXXXXXXXXXGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKL 252
                  L    +S                  G N  F ++F  GF  +    +  + WQK+
Sbjct:   230 AREDRLSREGFSESVGDRKRVRITKDGNFLGRNA-FKISFPPGFRPNASYLEEFEKWQKM 288

Query:   253 PYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCF-GNYLGIRSWFKR 311
              + SPY NA        ++ K  VA++HE++SL   ++V   +L  F   YL + S    
Sbjct:   289 EFPSPYLNARRFDAADPKARKRVVAVLHELLSLTMEKRVTCAQLDAFHSEYL-LPSRLIL 347

Query:   312 ALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLIESDPLM 349
              L+ H GIFY++NK    TV LK+AY   +LIE  PL+
Sbjct:   348 CLIKHQGIFYITNKGARGTVFLKDAYAGSNLIEKCPLL 385

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:4515103321 WTF1 "what's this factor?" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
 Identities = 36/114 (31%), Positives = 61/114 (53%)

Query:   235 GFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVERE 294
             G  + K   + +  ++ + YISPY++ +HL   + E +K A  ++HE++SL   ++   +
Sbjct:   283 GLNLSKSETRKISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVD 342

Query:   295 KLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRGSLIESDPL 348
              L  F          +  L+ HP +FYVS K    +V L+EAY+   LI+ DPL
Sbjct:   343 HLTHFREEFRFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPL 396

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2166305 emb1692 "embryo defective 1692" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 86/340 (25%), Positives = 155/340 (45%)

Query:    21 VKLSDVKWIRDRGLDHAVAREXXXXXXXXXXXXXXSEPSKSLPITIITQQKDSLQI--PI 78
             +  S  K +R   LD  V ++              S+P   +PI I+ + +  L I  P+
Sbjct:    52 ISCSAHKIVRSPSLDRHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPL 111

Query:    79 RPMEFIRRYPSVFQEF------LPGNVGV---QPHIKLTPEVLDIDADEQLVYQSQSYRQ 129
               +  IRRYP++F+ F      LP N      Q  ++LT     + A ++L  +S+    
Sbjct:   112 AILSMIRRYPTIFELFTTPTPHLPMNATKPLSQLCVRLTSAASSL-AMQELNLKSE-ISD 169

Query:   130 VVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERC 189
              +A +L KLLM+S   ++ L+ +  +  D G P +F + L  D+PD F+ V     + R 
Sbjct:   170 KLATKLQKLLMLSSHRRLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTV--DTSYGRA 227

Query:   190 SGFDLFGELELVCWSNDFXXXXXXXXXXXXGIDGENIMFS-MNFSSGFEIDKKMKKWMDN 248
                     LELV    +              I    + F  +N   G  + ++ + ++  
Sbjct:   228 --------LELVSSDPELANQMPSPEVDRGLIVDRPLKFKRLNLRRGLNLKRRHQGFLIK 279

Query:   249 WQKLPYISPYE-NATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRS 307
             +++ P + PY+ ++ +L  +S E++K A A++ EV+ L   ++   + L  F     + +
Sbjct:   280 FRESPDVCPYKMSSDYLASESIEAEKRACAVVREVLGLTVEKRTLIDHLTHFRKEFSLPN 339

Query:   308 WFKRALLNHPGIFYVSNKSGMYTVVLKEAYK-RGSLIESD 346
               +  ++ HP +FYVS K    +V L EAY   G L++ D
Sbjct:   340 KLRDLIVRHPELFYVSIKGMRDSVFLVEAYNDNGDLLDKD 379

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2138738 AT4G08940 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 66/268 (24%), Positives = 122/268 (45%)

Query:    82 EFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMI 141
             +FI ++P +FQ +   +  +   +  T  + D+  +E+ + +S    +V   R  KLLM+
Sbjct:   121 KFIPKHPLIFQTYRHSDGKIW--LGFTEFMEDLLDEEKGLMESMELDRVNCVR--KLLMM 176

Query:   142 SQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELV 201
             ++  +I L+ I   +   G+P+DF    V  +PDYFR V         +G D    LELV
Sbjct:   177 TKDKRILLSKIHHTRLLFGIPEDF-RDRVAKYPDYFRVV---------TGGDGNRVLELV 226

Query:   202 CWSNDFXXXXXXXXXXXXGIDGENIM-FSMNFSSGFEIDKKMKKWMDNWQKLPYISPYEN 260
              W  +                 + +  F +      E+++K  + ++     P +SPY +
Sbjct:   227 NWDTNLAVSELERLFMIDEDKAKRVFKFPVKHGKELELEEKDTRKLNLLNTFPLVSPYSD 286

Query:   261 ATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIF 320
                L   S E++K+ V I+HE ++L   ++     ++ F +   +     + L      F
Sbjct:   287 GWKLDVWSLEAEKYRVGIVHEFLNLTLEKRASIHHIVEFKDEFSLTRQTYQMLKKQSMSF 346

Query:   321 YVSNKSGMYTVVLKEAY-KRGSLIESDP 347
             Y++     +TV LK+AY + G L+  DP
Sbjct:   347 YLAGTEMNWTVFLKDAYDENGVLVSKDP 374


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      350       324   0.00086  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  244 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.12u 0.12s 23.24t   Elapsed:  00:00:01
  Total cpu time:  23.12u 0.12s 23.24t   Elapsed:  00:00:01
  Start:  Sat May 11 13:37:06 2013   End:  Sat May 11 13:37:07 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
pfam11955	332	pfam11955, PORR, Plant organelle RNA recognition d	1e-126

>gnl|CDD|221338 pfam11955, PORR, Plant organelle RNA recognition domain

 Score =  365 bits (939), Expect = e-126
 Identities = 133/327 (40%), Positives = 200/327 (61%), Gaps = 17/327 (5%)

Query: 28  WIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIPIRPMEFIRRY 87
           W+RD  LD AV REK L+ +L +K+L+ S+P  SLP+  +++ +  L +P   + F+R+Y
Sbjct: 1   WVRDPALDKAVEREKRLRLVLRLKDLLLSQPDHSLPLRDLSKLRRQLGLPRGALAFLRKY 60

Query: 88  PSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKI 147
           PS+F+ F   +  V   ++LTP+  D+ A+E  + +S      +  RL KLLM+S+  ++
Sbjct: 61  PSIFELFRHPSDSV-LCVRLTPKAEDLLAEEARLLESS--EPDLVDRLRKLLMMSKDRRL 117

Query: 148 TLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSNDF 207
            L  +  L+ DLGLPDDF  SLVP +PDYFR V                 LELV W  + 
Sbjct: 118 PLEKLAHLRRDLGLPDDFRDSLVPKYPDYFRLVDEDGGDG----------LELVSWDPEL 167

Query: 208 AVSVVEKKAKAKGIDGENIM----FSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATH 263
           AVS +EK+ + +   G+ +     F + F  GF++ KK ++ ++ WQKLPYISPYE+A+H
Sbjct: 168 AVSALEKRREIEDRGGDRVDRRFAFPVKFPPGFKLRKKFREKLEEWQKLPYISPYEDASH 227

Query: 264 LLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVS 323
           L P SDE++K AVA++HE++SL   ++ E + L  F    G+    ++ LL HPGIFY+S
Sbjct: 228 LDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKLRKVLLRHPGIFYLS 287

Query: 324 NKSGMYTVVLKEAYKRGSLIESDPLMN 350
            K   +TV L+EAY RG L+E DPL+ 
Sbjct: 288 TKGKRHTVFLREAYDRGELVEKDPLVL 314

This family, which was previously known as DUF860, has been shown to be a component of group II intron ribonucleoprotein particles in maize chloroplasts. The domain is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. All of the members are predicted to localise to mitochondria or chloroplasts. It seems likely that most PORR proteins function in organellar RNA metabolism. Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	100.0
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	99.4

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=100.00  E-value=5.2e-113  Score=836.93  Aligned_cols=310  Identities=44%  Similarity=0.750  Sum_probs=297.9

Q ss_pred             cccCcchhHHHHhhcCchhHHhHHHHHhcCCCCcccchhHHhccccCCCC-CchhhHHhhCCcceEeccCCCCCcCCccc
Q 039723           28 WIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIP-IRPMEFIRRYPSVFQEFLPGNVGVQPHIK  106 (350)
Q Consensus        28 ~vrd~~lD~~v~r~k~lr~v~~lk~li~s~P~~~lpl~~l~k~~~~L~l~-~~~~~FlrkyP~iF~~f~~~~~~~~p~~~  106 (350)
                      |+||++||++|+++|+++++++|+++|+++|++++|++++++++++||++ +++++||+|||+||++|.++. ...|||+
T Consensus         1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~-~~~~~~~   79 (335)
T PF11955_consen    1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPS-RSVPWFR   79 (335)
T ss_pred             CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCC-CCCceEE
Confidence            99999999999999999999999999999999999999999999999996 789999999999999998754 3689999


Q ss_pred             CCHHHhhcHHHHHHHHHhccchHHHHHHHHHHHhccCCCccchHHHHHhHHhcCCChhhhcccCCCCCCCeEEeccCCCc
Q 039723          107 LTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKH  186 (350)
Q Consensus       107 LT~~a~~L~~eE~~~~~~~~~~~~~v~rL~KLLMmS~~~rLpL~kl~~lr~dLGLP~Df~~~lv~~yP~~Fr~v~~~~~~  186 (350)
                      |||+|++|++||++++++  +++++|++|+||||||.+++|||++|++++||||||+||+++++++|||+|++|+..   
T Consensus        80 LT~~a~~L~~eE~~~~~~--~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~---  154 (335)
T PF11955_consen   80 LTPEAEDLLREERRVREE--MEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLE---  154 (335)
T ss_pred             eCHHHHHHHHHHHHHHHh--ChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecC---
Confidence            999999999999999987  789999999999999999999999999999999999999999999999999999953   


Q ss_pred             cccCCCCCcceEEEeecCCCccccHHHHHHHhc------CCCCccccccccCCCCccccHHHHHHHHhhhcCCCCCCCCC
Q 039723          187 ERCSGFDLFGELELVCWSNDFAVSVVEKKAKAK------GIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYEN  260 (350)
Q Consensus       187 ~~~~g~d~~~~LeLv~Wd~~LAvs~~E~~~~~~------~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~~Q~lPyiSPYed  260 (350)
                            ++..+||||+|||+||||++|++++.+      +..+++++|||+||+||++++++++|+++||++||+|||+|
T Consensus       155 ------~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed  228 (335)
T PF11955_consen  155 ------DGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYED  228 (335)
T ss_pred             ------CCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCC
Confidence                  234699999999999999999999964      25668999999999999999999999999999999999999


Q ss_pred             cCCCCCCChhhHHHHHHHHHHHhhccccchhhhhhHHhhhhccCCcHHHHHHHhhCCCcEEEEeeCCeeEEEEecccCCC
Q 039723          261 ATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRG  340 (350)
Q Consensus       261 ~~~l~~~S~e~EKRaVavlHELLsLTveKr~~~~~L~~fr~efgLp~k~~~~l~rHPgiFYvS~kg~~~TVfLrEAY~~~  340 (350)
                      +++++++|+++|||||||+|||||||||||+++++|+|||+|||||++++++|+|||||||||+||+|+||||||||++|
T Consensus       229 ~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~  308 (335)
T PF11955_consen  229 ASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGG  308 (335)
T ss_pred             ccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCC
Q 039723          341 SLIESDPLM  349 (350)
Q Consensus       341 ~Liek~Pl~  349 (350)
                      +|||||||+
T Consensus       309 ~Liek~Pl~  317 (335)
T PF11955_consen  309 ELIEKHPLV  317 (335)
T ss_pred             CCCCCCchH
Confidence            999999997

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=99.40  E-value=2.3e-12  Score=127.29  Aligned_cols=135  Identities=17%  Similarity=0.262  Sum_probs=111.7

Q ss_pred             hHHHHHHHHHHHhccCCCccchHHHHHhHHhcCCC-hhhhcccCCCCCCCeEEeccCCCccccCCCCCcceEEEeecCCC
Q 039723          128 RQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLP-DDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSND  206 (350)
Q Consensus       128 ~~~~v~rL~KLLMmS~~~rLpL~kl~~lr~dLGLP-~Df~~~lv~~yP~~Fr~v~~~~~~~~~~g~d~~~~LeLv~Wd~~  206 (350)
                      ....|.+|+.+|.-++++.||++.+..++.+|||+ ... .+++.+||..|.+...+.        .+.++++|+.    
T Consensus        16 ~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~-~~flrkyP~iF~~~~~~~--------~~~~~~~LT~----   82 (335)
T PF11955_consen   16 RLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKV-SRFLRKYPSIFEVFQHPS--------RSVPWFRLTP----   82 (335)
T ss_pred             hHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccH-HHHHHhCCceEEEeccCC--------CCCceEEeCH----
Confidence            35678999999999999999999999999999995 444 479999999999987521        3356899876    


Q ss_pred             ccccHHHHHHHhcCCCCccccccccCCCCccccHHHHHHHHhhhcCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHhhcc
Q 039723          207 FAVSVVEKKAKAKGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLF  286 (350)
Q Consensus       207 LAvs~~E~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~~Q~lPyiSPYed~~~l~~~S~e~EKRaVavlHELLsLT  286 (350)
                      -|   .+..                        .++...++                      +.|-.+|..|+.||||+
T Consensus        83 ~a---~~L~------------------------~eE~~~~~----------------------~~e~~~v~rL~KLLMMS  113 (335)
T PF11955_consen   83 EA---EDLL------------------------REERRVRE----------------------EMEPDLVERLRKLLMMS  113 (335)
T ss_pred             HH---HHHH------------------------HHHHHHHH----------------------hChHHHHHHHHHHhccC
Confidence            22   1222                        22223333                      67899999999999999


Q ss_pred             ccchhhhhhHHhhhhccCCcHHHHHHHh-hCCCcEEEEe
Q 039723          287 GAQKVEREKLLCFGNYLGIRSWFKRALL-NHPGIFYVSN  324 (350)
Q Consensus       287 veKr~~~~~L~~fr~efgLp~k~~~~l~-rHPgiFYvS~  324 (350)
                      .++++.+++|.|++++||||.+|...++ +||+.|-|..
T Consensus       114 ~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~  152 (335)
T PF11955_consen  114 KDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD  152 (335)
T ss_pred             CCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence            9999999999999999999999999977 9999999988

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 51/389 (13%), Positives = 118/389 (30%), Gaps = 100/389 (25%)

Query: 26  VKWI---RDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITI------------ITQQ 70
           + W+        +  +   + L   ++     +S+ S ++ + I                
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 71  KDSLQI--------PIRPMEF------IRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDA 116
           ++ L +                       R+  V  +FL         +      L  D 
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDE 302

Query: 117 DEQLV--YQSQSY----RQVVAGRLLKLLMISQMNKITLTMID----LLKWDLG-LPDDF 165
            + L+  Y         R+V+     +L +I++  +  L   D    +    L  + +  
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 166 LTSLVP-DFPDYFRAVG----------------YQNKHERCSGFDLFGELE----LVCWS 204
           L  L P ++   F  +                 + +  +      +  +L     +    
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-MVVVNKLHKYSLVEKQP 421

Query: 205 NDFAVSV----VEKKAKAKGIDG--ENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPY 258
            +  +S+    +E K K +       +I+   N    F+ D  +  ++D      Y   Y
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-----YF--Y 474

Query: 259 ENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPG 318
            +  H L   +  ++          +LF         +     +L  R  F    + H  
Sbjct: 475 SHIGHHLKNIEHPERM---------TLF-------RMV-----FLDFR--FLEQKIRHDS 511

Query: 319 IFYVSNKSGMYTVVLKEAYKRGSLIESDP 347
             + ++ S + T+   + YK   + ++DP
Sbjct: 512 TAWNASGSILNTLQQLKFYKP-YICDNDP 539

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00