Citrus Sinensis ID: 039727

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
MTAPPKPKIHFLCFRVLSEVTMGASSTDELLKSNSSQKERYSKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVPKAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIVKIDLTRGKKNPLERYDYCSDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPHLVEAVSDAFENFQMKTYGEKTQVHSTPEKKKRRR
ccccccccHHHHHHHHHHHHHccccccHHHHccccccccccccEEEccccccEEccHHHHHHHccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccHHHHHHHccccccccccHHHHHHHccccccccccccHHHHHHHcEEEccEEEEEcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHccHHHHHHHHHcccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccc
ccccccccEEEEEEEEEHHccccccccHHHHHHHHHccccccEEEcccccccEEEccEEEHHcccHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHcEcccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHccccccHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHcccHHEEccccccHHHHHHHHHccHHHHHcccccccccccHHHEEEEEEccccccccccccccEEcccccccEEccHHHHHHHcHHHHHHHEEEEEcccHHHHHHHHHHHHHHcccccccEEEccccHHHHHHcc
mtappkpkihFLCFRVLsevtmgassTDELLKsnssqkeryskhvhdnvhgniyldplalqfidtEEFQRLRDLKQLGlshlvypgavhsrfeHSLGVYWLAGTAVQTLKdyqgleldiddidiQTVKLAGLlhdvghgpfshmfereflprvlsgsnwthedmSLKMIDYIVDqhyididsgrldrEMIVtshasqksakeKQFLYDIVANgrngidvdkfdyivrdsracglgcnfQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANehlgisssiqqpaefwkLDDTIINAIladprpelkKARDIILRVRRRQLYQFCneysvpkakqehfkgitaqdivcsqkagevtlkeEDVIVSIVKIdltrgkknplerydycsdvKFLIDKEERISHLLPTFCQDMIVRVYAKEPHLVEAVSDAFENFqmktygektqvhstpekkkrrr
mtappkpkihFLCFRVLSEVTMGASSTDELLKSNSSQKERYSKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTshasqksakekqFLYDIVANgrngidvdKFDYIVRDSRACGLGCNFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINailadprpelkkARDIILRVRRRQLYQFCNEYSVPKAKQEHFKGITAQDIVCSQKagevtlkeedvivsivkidltrgkknplerydYCSDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPHLVEAVSDAFENFqmktygektqvhstpekkkrrr
MTAPPKPKIHFLCFRVLSEVTMGASSTDELLKSNSSQKERYSKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVPKAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIVKIDLTRGKKNPLERYDYCSDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPHLVEAVSDAFENFQMKTYGEKTQVHSTPEKKKRRR
********IHFLCFRVLSEVT***********************VHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVT**********KQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVPKAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIVKIDLTRGKKNPLERYDYCSDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPHLVEAVSDAFENFQM********************
*****KP*IHFLCFRVLSE*************************VHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVPKAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIVKIDLTRGKKNPLERYDYCSDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPHLVEAVSDAFENFQMKTYGE***************
MTAPPKPKIHFLCFRVLSEVTM**********************VHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVT********KEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVPKAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIVKIDLTRGKKNPLERYDYCSDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPHLVEAVSDAFENFQMKTYGE***************
*TAPPKPKIHFLCFRVLSEVTMGASSTDELLKSNSSQKERYSKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVPKAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIVKIDLTRGKKNPLERYDYCSDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPHLVEAVSDAFENFQMKTYGEKTQVHSTPE******
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SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTAPPKPKIHFLCFRVLSEVTMGASSTDELLKSNSSQKERYSKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVPKAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIVKIDLTRGKKNPLERYDYCSDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPHLVEAVSDAFENFQMKTYGEKTQVHSTPEKKKRRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query480 2.2.26 [Sep-21-2011]
B0G107514 Protein SAMHD1 homolog OS yes no 0.839 0.784 0.418 8e-81
Q5ZJL9614 SAM domain and HD domain- yes no 0.9 0.703 0.369 2e-73
Q502K2622 SAM domain and HD domain- yes no 0.881 0.680 0.355 2e-68
Q6INN8632 SAM domain and HD domain- N/A no 0.827 0.628 0.369 4e-68
Q0VCA5589 SAM domain and HD domain- yes no 0.831 0.677 0.368 8e-68
Q60710627 SAM domain and HD domain- yes no 0.875 0.669 0.345 7e-67
Q9Y3Z3626 SAM domain and HD domain- yes no 0.895 0.686 0.347 2e-66
Q09374587 Uncharacterized protein Z yes no 0.702 0.574 0.347 3e-46
Q5UQ48457 Putative HD domain-contai N/A no 0.856 0.899 0.293 6e-45
Q58554451 Uncharacterized protein M yes no 0.554 0.589 0.288 5e-25
>sp|B0G107|SAMH1_DICDI Protein SAMHD1 homolog OS=Dictyostelium discoideum GN=DDB_G0272484 PE=3 SV=1 Back     alignment and function desciption
 Score =  301 bits (771), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 176/421 (41%), Positives = 253/421 (60%), Gaps = 18/421 (4%)

Query: 42  SKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWL 101
           SK ++D +HG++ +    + FIDTE+FQRLRDLKQ+G +  V+P A HSRFEHS+GV  L
Sbjct: 79  SKIINDVIHGHMEVPDYIMDFIDTEQFQRLRDLKQVGTTSFVFPCASHSRFEHSIGVSHL 138

Query: 102 AGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTH 161
           AG  +  +K  Q  EL+I + + + V++AGL HD+GHGPFSH FE  ++ ++     + H
Sbjct: 139 AGKYIDRIKVTQP-ELEITEREQKFVRIAGLCHDLGHGPFSHAFE-SWVDQLGGSKRFHH 196

Query: 162 EDMSLKMIDYIVDQHYID-IDSGRLDREMIVTSHASQKSAKEKQFLYDIVANGRNGIDVD 220
           EDMS+KM+++I+D H +D  DS   D + I +    +   KE+ F+YDIVAN RN +DVD
Sbjct: 197 EDMSIKMLNWIIDDHGLDEYDSD--DIKFISSLIQGKHRPKERAFIYDIVANNRNSVDVD 254

Query: 221 KFDYIVRDSRACGLGCNFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYT 280
           KFDY+ RDS   G      F+RLME  +V+ D+IC+ +K+   +Y+LF  R  LH+ VYT
Sbjct: 255 KFDYLSRDSYYLGRSTVCDFQRLMEFSKVIDDQICFLSKEIYNLYELFHTRYSLHKLVYT 314

Query: 281 HAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDII 340
           H   K+IE M+ DA  EA++ L IS  ++ P EF  L D+++  I     PEL+K+R II
Sbjct: 315 HKVGKSIEFMIADAFTEADQFLKISDQLEDPKEFINLSDSLLRRIETSKEPELEKSRKII 374

Query: 341 LRVRRRQLYQFCNEYSVPKAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIVKIDLTR 400
             +R R LY+F +E  V   K        A+DI    K G   L E D+IV  +K++   
Sbjct: 375 KNIRNRNLYKFVDEIIVSTDKIRWSADSLAEDIA---KVGNGIL-ESDIIVQNLKLNYAF 430

Query: 401 GKKNPLE------RYDYCSDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPHLVEAVSDA 454
             K+P++      RYD  S   F I KEE  SHL+P   Q+  +R++ +     E V  A
Sbjct: 431 KDKDPVQSTRFYTRYD--STQSFTIKKEE-TSHLIPNQFQEERIRIFCRSKEKCEQVQTA 487

Query: 455 F 455
           F
Sbjct: 488 F 488
Putative nuclease.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: -
>sp|Q5ZJL9|SAMH1_CHICK SAM domain and HD domain-containing protein 1 OS=Gallus gallus GN=SAMHD1 PE=2 SV=1 Back     alignment and function description
>sp|Q502K2|SAMH1_DANRE SAM domain and HD domain-containing protein 1 OS=Danio rerio GN=samhd1 PE=2 SV=2 Back     alignment and function description
>sp|Q6INN8|SAMH1_XENLA SAM domain and HD domain-containing protein 1 OS=Xenopus laevis GN=samhd1 PE=2 SV=2 Back     alignment and function description
>sp|Q0VCA5|SAMH1_BOVIN SAM domain and HD domain-containing protein 1 OS=Bos taurus GN=SAMHD1 PE=2 SV=1 Back     alignment and function description
>sp|Q60710|SAMH1_MOUSE SAM domain and HD domain-containing protein 1 OS=Mus musculus GN=Samhd1 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y3Z3|SAMH1_HUMAN SAM domain and HD domain-containing protein 1 OS=Homo sapiens GN=SAMHD1 PE=1 SV=2 Back     alignment and function description
>sp|Q09374|YS48_CAEEL Uncharacterized protein ZK177.8 OS=Caenorhabditis elegans GN=ZK177.8 PE=4 SV=2 Back     alignment and function description
>sp|Q5UQ48|YL394_MIMIV Putative HD domain-containing protein L394 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L394 PE=4 SV=1 Back     alignment and function description
>sp|Q58554|Y1154_METJA Uncharacterized protein MJ1154 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1154 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
297801556473 metal-dependent phosphohydrolase HD doma 0.952 0.966 0.688 0.0
449446654471 PREDICTED: protein SAMHD1 homolog [Cucum 0.952 0.970 0.719 0.0
224103039477 predicted protein [Populus trichocarpa] 0.952 0.958 0.687 0.0
18421967473 metal-dependent phosphohydrolase HD doma 0.914 0.928 0.698 0.0
296086554473 unnamed protein product [Vitis vinifera] 0.952 0.966 0.711 0.0
356548613474 PREDICTED: protein SAMHD1 homolog [Glyci 0.922 0.934 0.707 0.0
356571413474 PREDICTED: protein SAMHD1 homolog [Glyci 0.922 0.934 0.701 1e-180
218187367496 hypothetical protein OsI_00082 [Oryza sa 0.910 0.881 0.706 1e-180
222617596502 hypothetical protein OsJ_00074 [Oryza sa 0.910 0.870 0.694 1e-179
255568836 861 catalytic, putative [Ricinus communis] g 0.877 0.488 0.711 1e-179
>gi|297801556|ref|XP_002868662.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297314498|gb|EFH44921.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/472 (68%), Positives = 390/472 (82%), Gaps = 15/472 (3%)

Query: 22  MGASSTDEL-----LKSNSSQKE-RYSKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLK 75
           MGA   ++L       + +   E R+SKHV+DNVHGNIYLDPL L+FIDTE+FQRLR+LK
Sbjct: 1   MGAYCNEDLSSLPVFSAGAPANELRFSKHVYDNVHGNIYLDPLCLKFIDTEQFQRLRELK 60

Query: 76  QLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHD 135
           QLG++++VYPGAVHSRFEHSLGVYWLAG  VQ LK +QG+EL ID+ D+QTV+LAGLLHD
Sbjct: 61  QLGVTNMVYPGAVHSRFEHSLGVYWLAGETVQRLKSFQGMELGIDNHDLQTVRLAGLLHD 120

Query: 136 VGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDR--EMIV-- 191
           +GHGPFSHMFEREFLP+V+SG  W+HE MS+ MID+IVD H+IDID+  L R  +MI+  
Sbjct: 121 IGHGPFSHMFEREFLPKVISGCRWSHESMSVNMIDHIVDTHHIDIDAQMLKRVKDMILAS 180

Query: 192 TSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMG 251
           T  +  KS  EK+FLYDIVANGRNGIDVDKFDY+VRDSRACGLGCNFQF+RL ETMRVM 
Sbjct: 181 TEFSQLKSNAEKRFLYDIVANGRNGIDVDKFDYLVRDSRACGLGCNFQFQRLTETMRVMD 240

Query: 252 DEICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQP 311
           +EICYRAK+Y  V+KLF+ RADL+RTVYTH KVKAIELM+VDA+++AN+ LGISS I  P
Sbjct: 241 NEICYRAKEYRNVHKLFATRADLYRTVYTHPKVKAIELMIVDAMVKANDFLGISSFISDP 300

Query: 312 AEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVPKAKQEHFKGITAQ 371
           +E+WKLDDTI+  I   P PEL +A+++ILRVRRRQLYQFCNEY+VPK K +HFK +TAQ
Sbjct: 301 SEYWKLDDTILKTIEIAPDPELAEAKELILRVRRRQLYQFCNEYAVPKDKIDHFKAVTAQ 360

Query: 372 DIVCSQKAGEVTLKEEDVIVSIVKIDLTRGKKNPLERY----DYCSDVKFLIDKEERISH 427
           DI+CSQK   +TLKE+D+ V+ VKIDL RG++NPLE      DY S  KF I  E+R+SH
Sbjct: 361 DIICSQKHTSLTLKEDDIAVTNVKIDLARGRENPLECINFFEDYDSAEKFGI-PEDRVSH 419

Query: 428 LLPTFCQDMIVRVYAKEPHLVEAVSDAFENFQMKTYGEKTQVHSTPEKKKRR 479
           LLPT  QDMIVRVYAK+P LVEAVS+AFENFQM+TYG KTQVH+TPEKKKRR
Sbjct: 420 LLPTTYQDMIVRVYAKKPELVEAVSEAFENFQMRTYGVKTQVHATPEKKKRR 471

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449446654|ref|XP_004141086.1| PREDICTED: protein SAMHD1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|224103039|ref|XP_002312899.1| predicted protein [Populus trichocarpa] gi|222849307|gb|EEE86854.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18421967|ref|NP_568580.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] gi|14488069|gb|AAK63855.1|AF389282_1 AT5g40270/MSN9_170 [Arabidopsis thaliana] gi|10177514|dbj|BAB10908.1| unnamed protein product [Arabidopsis thaliana] gi|20908076|gb|AAM26721.1| AT5g40270/MSN9_170 [Arabidopsis thaliana] gi|332007145|gb|AED94528.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296086554|emb|CBI32143.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356548613|ref|XP_003542695.1| PREDICTED: protein SAMHD1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356571413|ref|XP_003553871.1| PREDICTED: protein SAMHD1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|218187367|gb|EEC69794.1| hypothetical protein OsI_00082 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222617596|gb|EEE53728.1| hypothetical protein OsJ_00074 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|255568836|ref|XP_002525389.1| catalytic, putative [Ricinus communis] gi|223535352|gb|EEF37027.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
TAIR|locus:2173797473 AT5G40270 [Arabidopsis thalian 0.914 0.928 0.705 1.7e-169
TAIR|locus:2173807448 AT5G40290 [Arabidopsis thalian 0.877 0.939 0.673 4e-154
DICTYBASE|DDB_G0272484514 DDB_G0272484 "HD phosphohydrol 0.854 0.797 0.417 1.4e-78
UNIPROTKB|Q5ZJL9614 SAMHD1 "SAM domain and HD doma 0.283 0.221 0.510 3.5e-61
UNIPROTKB|G3X7R1491 SAMHD1 "SAM domain and HD doma 0.318 0.311 0.451 5e-60
UNIPROTKB|E2QTR2627 SAMHD1 "Uncharacterized protei 0.277 0.212 0.5 2.6e-59
UNIPROTKB|I3LSQ7511 LOC100625064 "Uncharacterized 0.281 0.264 0.496 8e-59
UNIPROTKB|Q0VCA5589 SAMHD1 "SAM domain and HD doma 0.318 0.259 0.451 2.2e-58
UNIPROTKB|Q6INN8632 samhd1 "SAM domain and HD doma 0.283 0.215 0.489 2e-56
MGI|MGI:1927468627 Samhd1 "SAM domain and HD doma 0.314 0.240 0.453 8.1e-56
TAIR|locus:2173797 AT5G40270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1648 (585.2 bits), Expect = 1.7e-169, P = 1.7e-169
 Identities = 316/448 (70%), Positives = 381/448 (85%)

Query:    40 RYSKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVY 99
             R+SKHV+DNVHGNIYLDPL L+FIDTE+FQRLR+LKQLG++++VYPGAVHSRFEHSLGVY
Sbjct:    25 RFSKHVYDNVHGNIYLDPLCLKFIDTEQFQRLRELKQLGVTNMVYPGAVHSRFEHSLGVY 84

Query:   100 WLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNW 159
             WLAG   Q LK++QG+EL ID+ D+QTV+LAGLLHD+GHGPFSHMFEREFLP+V+S   W
Sbjct:    85 WLAGETAQRLKNFQGMELGIDNYDLQTVRLAGLLHDIGHGPFSHMFEREFLPKVISDCQW 144

Query:   160 THEDMSLKMIDYIVDQHYIDIDSGRLDR--EMIVTS-HASQ-KSAKEKQFLYDIVANGRN 215
             +HE MS+ MID++VD H+IDID+  L R  +MI+ S   SQ K   EK+FLYDIVANGRN
Sbjct:   145 SHELMSVNMIDHMVDTHHIDIDAQMLKRVKDMILASTEFSQLKGNAEKRFLYDIVANGRN 204

Query:   216 GIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLH 275
             GIDVDKFDY+VRDSRACGLG NFQF+RL ETMRV+ +EIC+RAK+YL+V+KLF+ RADL+
Sbjct:   205 GIDVDKFDYLVRDSRACGLGSNFQFQRLTETMRVLDNEICFRAKEYLSVHKLFATRADLY 264

Query:   276 RTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKK 335
             RTVYTH+KVKAIELM+VDA+++AN HL ISS I  P+E+WKLDDTI+  I   P PEL +
Sbjct:   265 RTVYTHSKVKAIELMIVDAMVKANNHLEISSMINDPSEYWKLDDTILKTIEIAPDPELAE 324

Query:   336 ARDIILRVRRRQLYQFCNEYSVPKAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIVK 395
             A+++ILRVRRRQLYQFCNEY+VPK K +HFK +T QDI+CSQK   +TLKEED+ V+ VK
Sbjct:   325 AKELILRVRRRQLYQFCNEYAVPKDKIDHFKAVTPQDIICSQKHTSLTLKEEDIAVTNVK 384

Query:   396 IDLTRGKKNPLER---Y-DYCSDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPHLVEAV 451
             IDL RG++NPLE    Y DY S  KF+I  E+R+SHLLPT  QDMIVRVYAK+P LVEAV
Sbjct:   385 IDLARGRENPLECINFYKDYDSAEKFVIP-EDRVSHLLPTTYQDMIVRVYAKKPELVEAV 443

Query:   452 SDAFENFQMKTYGEKTQVHSTPEKKKRR 479
             S+AFENFQM+TYG K QVH+TPEKKKRR
Sbjct:   444 SEAFENFQMRTYGIKAQVHATPEKKKRR 471
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
TAIR|locus:2173807 AT5G40290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272484 DDB_G0272484 "HD phosphohydrolase domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJL9 SAMHD1 "SAM domain and HD domain-containing protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G3X7R1 SAMHD1 "SAM domain and HD domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QTR2 SAMHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LSQ7 LOC100625064 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCA5 SAMHD1 "SAM domain and HD domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6INN8 samhd1 "SAM domain and HD domain-containing protein 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
MGI|MGI:1927468 Samhd1 "SAM domain and HD domain, 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
COG1078421 COG1078, COG1078, HD superfamily phosphohydrolases 9e-59
cd00077145 cd00077, HDc, Metal dependent phosphohydrolases wi 8e-10
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 5e-07
pfam01966111 pfam01966, HD, HD domain 2e-06
>gnl|CDD|224004 COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only] Back     alignment and domain information 
 Score =  199 bits (507), Expect = 9e-59
 Identities = 112/362 (30%), Positives = 172/362 (47%), Gaps = 28/362 (7%)

Query: 42  SKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWL 101
            K + D VHG I LD L L+ IDT EFQRLR +KQLGL++LVYPGA H+RFEHSLGVY L
Sbjct: 3   EKVIKDPVHGYIELDELILELIDTPEFQRLRRIKQLGLAYLVYPGANHTRFEHSLGVYHL 62

Query: 102 AGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTH 161
           A   ++ L+  +  E +ID+ +   V+LA LLHD+GHGPFSH FE      +       H
Sbjct: 63  ARRLLEHLE--KNSEEEIDEEERLLVRLAALLHDIGHGPFSHTFEYVLDKNLGF----YH 116

Query: 162 EDMSLKMI---DYIVDQHYIDID---SGRLDREMIVTSHASQKSAKEKQFLYDIVANGRN 215
           ED++ ++I   +  ++     I           + +    S K   +       + +   
Sbjct: 117 EDVTQRIIKNGEIEINLVLNKILDKHGFDPADVIEILYGDSNKVLVQ-------IISS-- 167

Query: 216 GIDVDKFDYIVRDSRACGLGC-NFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADL 274
            +D D+ DY++RDS   G+       ER++  +RV+   +    K    +     +R  +
Sbjct: 168 ELDADRMDYLLRDSYYTGVSYGLIDLERILRVLRVVEGRLVISEKGIEAIESFLISRYLM 227

Query: 275 HRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELK 334
           ++ VY H   +  E ML  AL  A E   +    +   EF +LDD  + A+L D    L 
Sbjct: 228 YQQVYFHPVSRIAEAMLRRALKRAIELYDLDFDAE---EFRRLDDFELLALLRD---LLD 281

Query: 335 KARDIILRVRRRQLYQFCNEYSVPKAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIV 394
             R+++ R+  R LY+          +  + + +   D V   +  E  + E        
Sbjct: 282 LDRELLRRLFNRDLYKRDVILKDLALRFLNRELLKTLDFVQEIRDLESEVAEAKGDPEYY 341

Query: 395 KI 396
            I
Sbjct: 342 VI 343

Length = 421
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 480
KOG2681498 consensus Metal-dependent phosphohydrolase [Functi 100.0
COG1078421 HD superfamily phosphohydrolases [General function 100.0
PRK01286336 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.94
TIGR01353381 dGTP_triPase deoxyguanosinetriphosphate triphospho 99.87
PRK01096440 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.83
PRK05318432 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.81
PRK04926503 dgt deoxyguanosinetriphosphate triphosphohydrolase 99.73
PRK03007428 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.71
COG0232412 Dgt dGTP triphosphohydrolase [Nucleotide transport 99.35
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 99.03
cd00077145 HDc Metal dependent phosphohydrolases with conserv 98.77
TIGR00488158 putative HD superfamily hydrolase of NAD metabolis 98.53
smart00471124 HDc Metal dependent phosphohydrolases with conserv 98.39
PRK10119231 putative hydrolase; Provisional 98.24
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 97.89
TIGR03276179 Phn-HD phosphonate degradation operons associated 97.83
COG1418222 Predicted HD superfamily hydrolase [General functi 97.37
COG1713187 Predicted HD superfamily hydrolase involved in NAD 97.27
TIGR00295164 conserved hypothetical protein TIGR00295. This set 97.13
PRK12703339 tRNA 2'-O-methylase; Reviewed 97.04
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 97.04
PRK07152342 nadD putative nicotinate-nucleotide adenylyltransf 96.78
COG4341186 Predicted HD phosphohydrolase [General function pr 96.78
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 96.7
PRK12705508 hypothetical protein; Provisional 96.58
PRK00106535 hypothetical protein; Provisional 96.58
PRK12704520 phosphodiesterase; Provisional 96.57
TIGR0027780 HDIG uncharacterized domain HDIG. This domain is f 96.43
TIGR01596177 cas3_HD CRISPR-associated endonuclease Cas3-HD. CR 96.22
PRK04374869 PII uridylyl-transferase; Provisional 96.21
PF00233237 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase 96.14
PRK00227693 glnD PII uridylyl-transferase; Provisional 95.93
COG2206344 c-di-GMP phosphodiesterase class II (HD-GYP domain 95.66
PRK10885409 cca multifunctional tRNA nucleotidyl transferase/2 95.54
PRK03381774 PII uridylyl-transferase; Provisional 95.45
PRK13298417 tRNA CCA-pyrophosphorylase; Provisional 95.06
PRK05007884 PII uridylyl-transferase; Provisional 94.83
TIGR03760218 ICE_TraI_Pfluor integrating conjugative element re 94.76
PRK01759854 glnD PII uridylyl-transferase; Provisional 94.74
PRK00275895 glnD PII uridylyl-transferase; Provisional 94.63
PRK05092931 PII uridylyl-transferase; Provisional 94.59
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 94.53
PRK03059856 PII uridylyl-transferase; Provisional 94.08
COG1896193 Predicted hydrolases of HD superfamily [General fu 93.65
KOG3689707 consensus Cyclic nucleotide phosphodiesterase [Sig 92.34
TIGR02692466 tRNA_CCA_actino tRNA adenylyltransferase. The enzy 91.58
PRK11031496 guanosine pentaphosphate phosphohydrolase; Provisi 91.04
PRK10854513 exopolyphosphatase; Provisional 90.64
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 90.5
COG3437360 Response regulator containing a CheY-like receiver 88.57
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 88.36
COG3294269 HD supefamily hydrolase [General function predicti 88.15
COG1480700 Predicted membrane-associated HD superfamily hydro 87.37
PRK03826195 5'-nucleotidase; Provisional 87.04
PF08668196 HDOD: HDOD domain; InterPro: IPR013976 This domain 86.68
PF13023165 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B. 80.55
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=7e-101  Score=774.89  Aligned_cols=441  Identities=46%  Similarity=0.706  Sum_probs=405.3

Q ss_pred             cccccccccccCCCCCcccChHHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCC
Q 039727           37 QKERYSKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLE  116 (480)
Q Consensus        37 ~~~~~~k~i~DpvhG~I~l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~  116 (480)
                      +.+..+++|+|+|||.|+++|.+.+|||||+|||||+++|||+.|+|||||+||||||||||+.||+.+++.|+++|.+|
T Consensus        20 ~~~~~~~ii~d~vhg~i~l~pli~~lidt~~FqRLr~vkQlGl~~~vyp~A~HsRfeHsLG~~~lA~~~v~~L~~~q~~E   99 (498)
T KOG2681|consen   20 QILDPSKIINDNVHGEIELPPLIIKLIDTPLFQRLRHVKQLGLRYLVYPGANHSRFEHSLGTYTLAGILVNALNKNQCPE   99 (498)
T ss_pred             ccCCHHHhhccccCceecCChHHHHHhccHHHHHHHHHHHhCceeeeccCCccchhhhhhhhHHHHHHHHHHHhhcCCCC
Confidence            34455899999999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             CCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCC--------CChhhhhh-
Q 039727          117 LDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYID--------IDSGRLDR-  187 (480)
Q Consensus       117 l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~--------~~~~~~~~-  187 (480)
                      ++|++.|.+||++||||||||||||||+||..|.+.+.+|..|.||++|..|++++.++++++        ++.++++. 
T Consensus       100 l~It~~d~~~vqvA~LLHDIGHGPfSHmFe~~f~~~v~s~~e~~HE~~si~~i~~i~~~~~i~~~~~~~~~~~~~~~~~v  179 (498)
T KOG2681|consen  100 LCITEVDLQAVQVAALLHDIGHGPFSHLFEGEFTPMVRSGPEFYHEDMSIDMIKKISNEMQIKRIARCLLNIDHQDADAV  179 (498)
T ss_pred             CCCCHHHHHHHHHHHHHhhcCCCchhhhhhheecccccCCcccchhhhHHHHHHHHhhhhhhhhHHHhhcCCCHHHHHHH
Confidence            999999999999999999999999999999999998889999999999999999999988775        66666665 


Q ss_pred             -hhhhccCCC-----ccc-ccchhhHHhhhhcCCCCccccccccccccccccCCCCcc--hHHHhhcceEE--ECCeEEe
Q 039727          188 -EMIVTSHAS-----QKS-AKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNF--QFERLMETMRV--MGDEICY  256 (480)
Q Consensus       188 -~~I~~~~~~-----~~~-~~~~~~l~~Iv~n~~~~lDvDrlDYl~RDs~~~Gv~~~~--D~~rLi~~~~v--~~~~i~~  256 (480)
                       ++|+|..+.     .++ ..++.|||+||+|+++||||||||||.|||.+||+..+|  |++||+..+||  .+++|||
T Consensus       180 KdmI~g~sE~~~~w~l~g~~~~ksflfdIVsN~rnGiDVDK~DYl~RD~~~~Gi~~~fs~~~~rl~~~~RV~~~~n~I~y  259 (498)
T KOG2681|consen  180 KDMILGSSEDDHKWYLKGPDENKSFLFDIVSNDRNGLDVDKFDYLRRDSKALGIGNNFSQDFTRLFLGARVVIDDNRICY  259 (498)
T ss_pred             HHHhcCcccccccccccCCCCCceEEEEEecCCcccccchhHHHHHhhccccccccchHHHHHHHhhcceeeccCCEeEe
Confidence             899998763     223 345679999999999999999999999999999999988  99999999999  6889999


Q ss_pred             ecccHHHHHHHHHHHHhhhhHHhcCchhHHHHHHHHHHHHHhhhhhCCC-cCCCChHHHhhCCHHHHHHHHhCCCcccHH
Q 039727          257 RAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGIS-SSIQQPAEFWKLDDTIINAILADPRPELKK  335 (480)
Q Consensus       257 ~~k~~~~i~~~~~~R~~my~~VY~H~~~~~~e~ml~~al~~a~~~l~is-~~~~dp~~yl~LDD~il~~i~~s~~~~l~~  335 (480)
                      +.|++.+++.||.+|+.+|+.||+|++++|+|.|++|||.+|++++.++ ..++||++|++|||.++..|+.+++|++.+
T Consensus       260 r~k~~~~l~~lf~tR~~Lhr~vYqhp~~~~mdlmivDal~ra~~~l~it~~~i~D~~~~~kldD~vl~~I~~~~DP~l~e  339 (498)
T KOG2681|consen  260 RIKCYGSLYVLFHTRYLLHRKVYQHPQVGAMDLMIVDALTRALDHLEITRSYIQDPNAFSKLDDYVLAEIEQSTDPKLVE  339 (498)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhhhHHHhhhhhhcCHHHHHHhhHHHHHHhhcCCCchhHH
Confidence            9999999999999999999999999999999999999999999999998 488899999999999999999999999999


Q ss_pred             HHHHHHHhhcCCcceeccccccC---hhhhhhcccCChhhhhhhhccCCCCCCCCceEEEeEEeccCCCCCCCCCccccC
Q 039727          336 ARDIILRVRRRQLYQFCNEYSVP---KAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIVKIDLTRGKKNPLERYDYC  412 (480)
Q Consensus       336 a~~ll~ri~~R~Lyk~v~e~~v~---~~~~~~~~~~~~~eii~~~~~~~~~l~~~diiv~~~~id~~~~~~~Pl~~V~f~  412 (480)
                      |++++.|+.+|.+|++.+|+..+   ...++.++.+++++++|++.... .++.+||++++..|++|+|.+||++.|.|+
T Consensus       340 aqell~ri~~R~~y~~~~Eta~~~~~k~kie~~k~v~~~~~~~~q~~~t-~~k~edia~t~i~i~~grg~~nple~I~f~  418 (498)
T KOG2681|consen  340 AQELLLRIERRGYYPYNPETAPNHDLKRKIEDIKHVFPEALIKTQCEIT-LLKYEDIAFTVIHIDLGRGTKNPLEKILFY  418 (498)
T ss_pred             HHHHHHHHhhccccCCCCCcCCCcccchhhhhhhccChHHHhhcccccc-ccchhheeeeeEEeeeccCCCChhHHhhhc
Confidence            99999999999999999998877   55677788888899998765433 378899999999999999999999999763


Q ss_pred             ----CCceeecCccccccccCcCCCCceEEEEEecCCC--cHHHHHHHH------HHHHHHHcCCCCCCCCCccccccC
Q 039727          413 ----SDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPH--LVEAVSDAF------ENFQMKTYGEKTQVHSTPEKKKRR  479 (480)
Q Consensus       413 ----~~~~~~l~~~~evs~l~P~~f~e~~irVy~~~~~--~~~~v~~A~------~~~~~~~~~~~~~~~~tp~~~~~~  479 (480)
                          +.+.|.+. +..+|.++|..+++..++||+++++  ..+++..+|      +++..+++|.+.+...||.||.+.
T Consensus       419 ~~~~~~~s~~~~-K~~vs~~~s~~~~~~~~kv~akk~e~~~~ea~s~~f~~~~ad~~~~~rt~~~~~~~~ltp~kk~~~  496 (498)
T KOG2681|consen  419 DPYANPESFRIH-KPHVSKYLSTTYVEPLFKVEAKKSEAAAYEADSIPFYWGSADRNFYARTVGNEKTALLTPLKKNVI  496 (498)
T ss_pred             cccCCccccccC-CCcccccCCchhhhhhhhhhccchHHhhhhhcccccccchhhhhhhhcccccccchhcchhhcccC
Confidence                45677776 8899999999999999999999887  789999999      777778889999999999999764

>COG1078 HD superfamily phosphohydrolases [General function prediction only] Back     alignment and domain information
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative Back     alignment and domain information
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional Back     alignment and domain information
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PRK10119 putative hydrolase; Provisional Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism] Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>COG4341 Predicted HD phosphohydrolase [General function prediction only] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>TIGR00277 HDIG uncharacterized domain HDIG Back     alignment and domain information
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms] Back     alignment and domain information
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>COG3294 HD supefamily hydrolase [General function prediction only] Back     alignment and domain information
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>PRK03826 5'-nucleotidase; Provisional Back     alignment and domain information
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity Back     alignment and domain information
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
3u1n_A528 Structure Of The Catalytic Core Of Human Samhd1 Len 2e-64
2hek_A371 Crystal Structure Of O67745, A Hypothetical Protein 6e-29
2q14_A410 Crystal Structure Of Phosphohydrolase (Bt4208) From 5e-25
2o6i_A480 Structure Of An Enterococcus Faecalis Hd Domain Pho 1e-19
>pdb|3U1N|A Chain A, Structure Of The Catalytic Core Of Human Samhd1 Length = 528 Back     alignment and structure 
Iteration: 1

 Score =  243 bits (619), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 165/483 (34%), Positives = 251/483 (51%), Gaps = 57/483 (11%)
Query: 47  DNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAV 106
           D +HG+I L PL ++ IDT +FQRLR +KQLG  + V+PGA H+RFEHSLGV +LAG  V
Sbjct: 22  DPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLV 81
Query: 107 QTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSL 166
             L + Q  EL I + D+  V++AGL HD+GHGPFSH F+  F+P       WTHE  S+
Sbjct: 82  HALGEKQP-ELQISERDVLCVQIAGLCHDLGHGPFSHXFDGRFIPLARPEVKWTHEQGSV 140
Query: 167 KMIDYIVDQHYI-------------DID------SGRLDREMIVTSHASQKSAKEKQFLY 207
              +++++ + I             DI        G L+  +  +    +   + K FLY
Sbjct: 141 XXFEHLINSNGIKPVXEQYGLIPEEDICFIKEQIVGPLESPVEDSLWPYKGRPENKSFLY 200
Query: 208 DIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRV--MGDE--ICYRAKDYLT 263
           +IV+N RNGIDVDK+DY  RD    G+  NF ++R ++  RV  + +E  IC R K+   
Sbjct: 201 EIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARDKEVGN 260
Query: 264 VYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLG----------ISSSIQQPAE 313
           +Y  F  R  LHR  Y H     I+  + DA L+A++++           IS++I     
Sbjct: 261 LYDXFHTRNSLHRRAYQHKVGNIIDTXITDAFLKADDYIEITGAGGKKYRISTAIDDXEA 320
Query: 314 FWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP---KAKQEHFKGITA 370
           + KL D I   IL    P+LK AR+I+ ++  R L+++  E       K K+E ++ +  
Sbjct: 321 YTKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESLPK 380
Query: 371 QDIVCSQKAG---EVTLKEEDVIVSIVKIDLTRGKKNPLERYD-YCSDV--KFLIDKEER 424
           +  V S K     +V LK ED IV ++  D    +KNP++    YC     + +   + +
Sbjct: 381 E--VASAKPKVLLDVKLKAEDFIVDVINXDYGXQEKNPIDHVSFYCKTAPNRAIRITKNQ 438
Query: 425 ISHLLPTFCQDMIVRVYAKE----------PHLVEAVSDAFENFQMKTYGEKTQVHSTPE 474
           +S LLP    + ++RVY K+           + V+  +D   NF     G+      TP+
Sbjct: 439 VSQLLPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCAD--RNFTKPQDGDVIAPLITPQ 496
Query: 475 KKK 477
           KK+
Sbjct: 497 KKE 499
>pdb|2HEK|A Chain A, Crystal Structure Of O67745, A Hypothetical Protein From Aquifex Aeolicus At 2.0 A Resolution. Length = 371 Back     alignment and structure
>pdb|2Q14|A Chain A, Crystal Structure Of Phosphohydrolase (Bt4208) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A Resolution Length = 410 Back     alignment and structure
>pdb|2O6I|A Chain A, Structure Of An Enterococcus Faecalis Hd Domain Phosphohydrolase Length = 480 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
3u1n_A528 SAM domain and HD domain-containing protein 1; deo 1e-127
2hek_A371 Hypothetical protein; predominantly alpha helical 1e-94
3irh_A480 HD domain protein; phosphohydrolase, dntpase, stru 5e-83
2q14_A410 Phosphohydrolase; BT4208, HD domain, structural ge 4e-81
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens} Length = 528 Back     alignment and structure
 Score =  379 bits (975), Expect = e-127
 Identities = 164/498 (32%), Positives = 246/498 (49%), Gaps = 51/498 (10%)

Query: 32  KSNSSQKERYSKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSR 91
           +      E   +   D +HG+I L PL ++ IDT +FQRLR +KQLG  + V+PGA H+R
Sbjct: 7   QFEKGALEVLFQGPGDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNR 66

Query: 92  FEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLP 151
           FEHSLGV +LAG  V  L + Q  EL I + D+  V++AGL HD+GHGPFSHMF+  F+P
Sbjct: 67  FEHSLGVGYLAGCLVHALGEKQP-ELQISERDVLCVQIAGLCHDLGHGPFSHMFDGRFIP 125

Query: 152 RVLSGSNWTHEDMSLKMIDYIVDQHYID-------------------IDSGRLDREMIVT 192
                  WTHE  S+ M +++++ + I                       G L+  +  +
Sbjct: 126 LARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLESPVEDS 185

Query: 193 SHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMGD 252
               +   + K FLY+IV+N RNGIDVDK+DY  RD    G+  NF ++R ++  RV   
Sbjct: 186 LWPYKGRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEV 245

Query: 253 E----ICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLG----- 303
           +    IC R K+   +Y +F  R  LHR  Y H     I+ M+ DA L+A++++      
Sbjct: 246 DNELRICARDKEVGNLYDMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAG 305

Query: 304 -----ISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
                IS++I     + KL D I   IL    P+LK AR+I+ ++  R L+++  E    
Sbjct: 306 GKKYRISTAIDDMEAYTKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPT 365

Query: 359 KA-KQEHFKGITAQDIVCSQKAG---EVTLKEEDVIVSIVKIDLTRGKKNPLER----YD 410
              K +     +    V S K     +V LK ED IV ++ +D    +KNP++       
Sbjct: 366 GQIKIKREDYESLPKEVASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKNPIDHVSFYCK 425

Query: 411 YCSDVKFLIDKEERISHLLPTFCQDMIVRVYAK--EPHLVEAVSDAFE------NFQMKT 462
              +    I K + +S LLP    + ++RVY K  +   + A    F       NF    
Sbjct: 426 TAPNRAIRITKNQ-VSQLLPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCADRNFTKPQ 484

Query: 463 YGEKTQVHSTPEKKKRRR 480
            G+      TP+KK+   
Sbjct: 485 DGDVIAPLITPQKKEWND 502
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Length = 371 Back     alignment and structure
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A* Length = 480 Back     alignment and structure
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Length = 410 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
3u1n_A528 SAM domain and HD domain-containing protein 1; deo 100.0
3irh_A480 HD domain protein; phosphohydrolase, dntpase, stru 100.0
2hek_A371 Hypothetical protein; predominantly alpha helical 100.0
2q14_A410 Phosphohydrolase; BT4208, HD domain, structural ge 100.0
2dqb_A376 Deoxyguanosinetriphosphate triphosphohydrolase, P; 99.97
2pgs_A451 Putative deoxyguanosinetriphosphate triphosphohyd; 99.95
3bg2_A444 DGTP triphosphohydrolase; structural genomics, NYS 99.93
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 98.45
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 98.41
3dto_A223 BH2835 protein; all alpha-helical protein, structu 98.24
3gw7_A239 Uncharacterized protein YEDJ; all alpha-helical pr 98.23
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 98.17
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 98.01
2o08_A188 BH1327 protein; putative HD superfamily hydrolase, 97.87
3ccg_A190 HD superfamily hydrolase; NP_347894.1, HD domain, 97.83
2qgs_A225 Protein Se1688; alpha-helical protein, structural 97.78
2ogi_A196 Hypothetical protein SAG1661; structural genomics, 97.39
3tm8_A328 BD1817, uncharacterized protein; HD-GYP, phosphodi 96.69
3hc1_A305 Uncharacterized HDOD domain protein; HDOD domain p 96.65
1zkl_A353 HCP1, TM22, high-affinity CAMP-specific 3',5'-cycl 96.4
3i7a_A281 Putative metal-dependent phosphohydrolase; YP_9268 95.96
1f0j_A377 PDE4B, phosphodiesterase 4B; PDE phosphodiesterase 95.61
1taz_A365 Calcium/calmodulin-dependent 3',5'-cyclic nucleot 95.56
2our_A331 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 95.49
3v93_A345 Cyclic nucleotide specific phosphodiesterase; para 95.46
3itu_A345 CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn- 95.45
1y2k_A349 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 95.35
1vqr_A297 Hypothetical protein CJ0248; HD-domain/pdease-like 95.25
1tbf_A347 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 95.25
2r8q_A359 Class I phosphodiesterase PDEB1; leishimaniasis, p 95.24
3dyn_A329 High affinity CGMP-specific 3',5'-cyclic phosphod 95.01
3ecm_A338 High affinity CAMP-specific and IBMX-insensitive 3 94.98
3qi3_A533 High affinity CGMP-specific 3',5'-cyclic phosphod 94.78
3hr1_A380 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 94.6
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 94.52
3ljx_A288 MMOQ response regulator; structural genomics, PSI- 94.46
3g4g_A421 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 94.37
3bjc_A878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 93.94
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 93.87
3rf0_A209 Exopolyphosphatase; structural genomics, center fo 93.35
2cqz_A177 177AA long hypothetical protein; hypothetical prot 93.2
2ibn_A250 Inositol oxygenase; reductase, DIIRON, structural 92.67
3m1t_A275 Putative phosphohydrolase; structural genomics, jo 92.18
1so2_A420 CGMP-inhibited 3',5'-cyclic phosphodiesterase B; P 92.14
3kq5_A393 Hypothetical cytosolic protein; structural genomic 92.07
3mem_A457 Putative signal transduction protein; structural g 92.04
3m5f_A244 Metal dependent phosphohydrolase; CAS3, prokaryoti 91.88
3sk9_A265 Putative uncharacterized protein TTHB187; crispr, 91.56
1ynb_A173 Hypothetical protein AF1432; structural genomics, 89.75
1u6z_A513 Exopolyphosphatase; alpha/beta protein, askha (ace 85.46
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 82.58
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 82.5
3hi0_A508 Putative exopolyphosphatase; 17739545, structural 80.61
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=9.3e-103  Score=826.59  Aligned_cols=433  Identities=37%  Similarity=0.624  Sum_probs=341.3

Q ss_pred             ccccccCCCCCcccChHHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCCh
Q 039727           42 SKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDD  121 (480)
Q Consensus        42 ~k~i~DpvhG~I~l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~  121 (480)
                      .++++|||||+|+|++.+.+||+||+|||||+|+|||++++|||||+||||+|||||||||+.+++.|..+++ ++++++
T Consensus        17 ~~~~~Dpvhg~I~l~~~~~riI~s~~FqRLr~i~Qlg~~~~v~pga~hTRf~HSLgV~~la~~i~~~l~~~~~-~~~~~~   95 (528)
T 3u1n_A           17 FQGPGDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVHALGEKQP-ELQISE   95 (528)
T ss_dssp             ---CCBTTTBSCCCCHHHHHHHSSHHHHGGGGSBTTGGGTTTCTTCCCBHHHHHHHHHHHHHHHHHHHHHHCG-GGCCCH
T ss_pred             cccccCCCCcCEEeCHHHHHHhCCHHHhhccCccccCCcccccCCCCcCHHHHHHHHHHHHHHHHHHHHhhCc-ccCCCH
Confidence            4789999999999999999999999999999999999999999999999999999999999999999988765 678899


Q ss_pred             HHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCC-------C-Chhhhhh--hhhh
Q 039727          122 IDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYID-------I-DSGRLDR--EMIV  191 (480)
Q Consensus       122 ~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~-------~-~~~~~~~--~~I~  191 (480)
                      .|..++++||||||||||||||++|.+|.+....+.+|+||++|.+|++.+++++++.       + +++++..  ++|.
T Consensus        96 ~d~~~v~~AaLlHDiGH~PFsH~~E~~~~~~~~~~~~~~HE~~S~~i~~~li~~~~i~~iL~~~g~~~~~~i~~I~~lI~  175 (528)
T 3u1n_A           96 RDVLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIV  175 (528)
T ss_dssp             HHHHHHHHHHHHTTTTCBTTBHHHHHTHHHHHCTTSCCCHHHHHHHHHHHHHHHTTCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCccchhhhhhhhhhcCCCCCCHHHHHHHHHHHHhccccHHHHHHHcCCCcHHHHHHHHHHhc
Confidence            9999999999999999999999999998765545678999999999998776554431       2 2344432  5666


Q ss_pred             ccCC--------Ccc-cccchhhHHhhhhcCCCCccccccccccccccccCCCCcchHHHhhcceEEEC----CeEEeec
Q 039727          192 TSHA--------SQK-SAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMG----DEICYRA  258 (480)
Q Consensus       192 ~~~~--------~~~-~~~~~~~l~~Iv~n~~~~lDvDrlDYl~RDs~~~Gv~~~~D~~rLi~~~~v~~----~~i~~~~  258 (480)
                      |...        +.. .+.++.||++||+|++|+|||||||||+||||+||+.++||++|||++++|++    .+|||..
T Consensus       176 G~~~~~~~~~~~~~~gr~~ek~fL~~IVsn~~s~lDvDRmDYLlRDs~~tGv~~~~D~~RLi~~~rv~~~~~~~~I~~~~  255 (528)
T 3u1n_A          176 GPLESPVEDSLWPYKGRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARD  255 (528)
T ss_dssp             CCCC------CCCCSSSCGGGGGGGGSSCCTTTSCCHHHHHHHHHHHHHHTCCCCCCHHHHHHTEEEEESSSSEEEEEEG
T ss_pred             CccccccccccccccCCcchhhHHHHHHhCCCCCCCccchhhHHHHHHHhCCCCCcCHHHHHhhcEEEecCCCcEEEEec
Confidence            6432        111 23357899999999999999999999999999999998999999999999985    3699999


Q ss_pred             ccHHHHHHHHHHHHhhhhHHhcCchhHHHHHHHHHHHHHhhhhhC----------CCcCCCChHHHhhCCHHHHHHHHhC
Q 039727          259 KDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLG----------ISSSIQQPAEFWKLDDTIINAILAD  328 (480)
Q Consensus       259 k~~~~i~~~~~~R~~my~~VY~H~~~~~~e~ml~~al~~a~~~l~----------is~~~~dp~~yl~LDD~il~~i~~s  328 (480)
                      |++.++++||.+|+.||++||+||+++|+|.||.+||.+|++++.          +++.+.||++|++|||+++..|+.+
T Consensus       256 k~~~~ie~~~~aR~~My~~VY~Hk~~ra~e~Ml~~al~~A~~~l~i~g~~g~~~~is~~~~d~~~f~kLdD~~l~~il~s  335 (528)
T 3u1n_A          256 KEVGNLYDMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYTKLTDNIFLEILYS  335 (528)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTTCCEECGGGCEECGGGGGGCHHHHTTCSTHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccccccccccccccCHHHHHhCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999764          6778899999999999999999999


Q ss_pred             CCcccHHHHHHHHHhhcCCcceeccccccChhh-h--hhcccCChhhhhhhhc--cCCCCCCCCceEEEeEEeccCCCCC
Q 039727          329 PRPELKKARDIILRVRRRQLYQFCNEYSVPKAK-Q--EHFKGITAQDIVCSQK--AGEVTLKEEDVIVSIVKIDLTRGKK  403 (480)
Q Consensus       329 ~~~~l~~a~~ll~ri~~R~Lyk~v~e~~v~~~~-~--~~~~~~~~~eii~~~~--~~~~~l~~~diiv~~~~id~~~~~~  403 (480)
                      .+|++++|++|++||++|+|||+|++..++... +  +.++.+ +++|.++..  ...+.+.++||||++++||||||++
T Consensus       336 ~~~~L~~Ar~i~~ri~~R~LYK~v~~~~~~~~~~~~~~~~~~~-~~eIa~~~~~~~~~~~L~~~DiiV~~~~idyG~~~~  414 (528)
T 3u1n_A          336 TDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESL-PKEVASAKPKVLLDVKLKAEDFIVDVINMDYGMQEK  414 (528)
T ss_dssp             CCSTTHHHHHHHHHHHHTCCCEEEEEECCTTSCCCCGGGGGGH-HHHHHTCCCSSCCSSCCCGGGEEEEEEECC------
T ss_pred             CCcchHHHHHHHHHHHcCCCCeeeeeeccCcccccCHHHHHHH-HHHHHHhccCcccccccCcccEEEEEEeecCCCCCC
Confidence            999999999999999999999999998775431 1  112211 345554432  1245789999999999999999999


Q ss_pred             CCCCccccCC----CceeecCccccccccCcCCCCceEEEEEecCC--CcHHHHHHHHHHHHHHHcCCCCC------CCC
Q 039727          404 NPLERYDYCS----DVKFLIDKEERISHLLPTFCQDMIVRVYAKEP--HLVEAVSDAFENFQMKTYGEKTQ------VHS  471 (480)
Q Consensus       404 ~Pl~~V~f~~----~~~~~l~~~~evs~l~P~~f~e~~irVy~~~~--~~~~~v~~A~~~~~~~~~~~~~~------~~~  471 (480)
                      ||+++|+|++    ++++.++ ++++|.++|.+|+|..+|||||++  +++++|++||++||+++...++|      +..
T Consensus       415 nPl~~V~Fy~k~~~~~~~~i~-~~~vS~llP~~F~E~~iRVy~k~~d~~~~~~a~~aF~~wc~~~~~~~~~~~~~~~~~~  493 (528)
T 3u1n_A          415 NPIDHVSFYCKTAPNRAIRIT-KNQVSQLLPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCADRNFTKPQDGDVIAPLI  493 (528)
T ss_dssp             ----CCCEECSSSTTBCC----------------CCEEEEEEESCCSHHHHHHHHHHHHHHHHTTTCCCCCC--------
T ss_pred             ChhhceecccCCCCCcCcccC-hhhhcccCcccccceEEEEEEcCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCeecccc
Confidence            9999999864    4678888 899999999999999999999875  58899999999999998877755      557


Q ss_pred             Cccccc
Q 039727          472 TPEKKK  477 (480)
Q Consensus       472 tp~~~~  477 (480)
                      ||.|+.
T Consensus       494 ~~~~~~  499 (528)
T 3u1n_A          494 TPQKKE  499 (528)
T ss_dssp             ------
T ss_pred             Cccchh
Confidence            888763
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A* Back     alignment and structure
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Back     alignment and structure
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} Back     alignment and structure
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV} Back     alignment and structure
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis} Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A Back     alignment and structure
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens} Back     alignment and structure
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* Back     alignment and structure
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} Back     alignment and structure
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ... Back     alignment and structure
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2 Back     alignment and structure
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ... Back     alignment and structure
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A* Back     alignment and structure
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A Back     alignment and structure
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ... Back     alignment and structure
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3 Back     alignment and structure
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ... Back     alignment and structure
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} Back     alignment and structure
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A* Back     alignment and structure
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A* Back     alignment and structure
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A* Back     alignment and structure
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A Back     alignment and structure
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis} Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Back     alignment and structure
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4 Back     alignment and structure
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0 Back     alignment and structure
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A* Back     alignment and structure
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii} Back     alignment and structure
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei} Back     alignment and structure
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 480
d2o6ia1453 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {E 4e-68
d2heka1369 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 { 4e-57
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} Length = 453 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Hypothetical protein EF1143
species: Enterococcus faecalis [TaxId: 1351]

 Score =  222 bits (567), Expect = 4e-68
 Identities = 97/460 (21%), Positives = 170/460 (36%), Gaps = 55/460 (11%)

Query: 35  SSQKERYSKHVHDNVHGNIYLD-PLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFE 93
             Q+    K   D VH  I++   + L  I++ E QRLR +KQLG S   + GA HSRF 
Sbjct: 6   KEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFS 65

Query: 94  HSLGVYWLAGTAVQTLKDYQGL----ELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREF 149
           HSLGVY +     +  +    +    E   +D +      A LLHDVGHGP+SH FE  F
Sbjct: 66  HSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIF 125

Query: 150 LPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDI 209
                   +  HE +++++I     + Y  ++    D    V S  +++       +  +
Sbjct: 126 --------DTNHEAITVQIITSPETEVYQILNRVSADFPEKVASVITKQY--PNPQVVQM 175

Query: 210 VANGRNGIDVDKFDYIVRDSRACGLGC-NFQFERLMETMRVMGDEICYRAKDYLTVYKLF 268
           +    + ID D+ DY++RD+   G     F   R++  +R     I +       V    
Sbjct: 176 I---SSQIDADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVEDYI 232

Query: 269 SARADLHRTVYTHAKVKAIELMLVDALLEANEHLG---------------ISSSIQQPAE 313
            +R  ++  VY H   + +E++L   L  A E                           E
Sbjct: 233 VSRYQMYVQVYFHPVSRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQE 292

Query: 314 FWKLDDTIINAILADPRPEL-KKARDIILRVRRRQLYQFCNEYSVPKAKQEHFK------ 366
           + KLDD +++               D+  R   R+  +    ++  K             
Sbjct: 293 YLKLDDGVLSTYFTQWMDVPDSILGDLAKRFLMRKPLKSA-TFTNEKESAATIAYLRELI 351

Query: 367 ---GITAQDIVCSQKAGEVTL----KEEDVIVSIVKIDLTRGKKNPLERYDYCSD-VKFL 418
              G   +       + ++        +D   + +++    G    L      S  V  L
Sbjct: 352 EKVGFNPKYYTAINSSYDLPYDFYRPNKDRHRTQIELMQKDGSLVELATV---SPLVAAL 408

Query: 419 IDKEERISHLLPTFCQDMIVRVYAKEPHLVEAVSDAFENF 458
             + +        F ++M+ +   K   L +     F ++
Sbjct: 409 AGQSQGDERFY--FPKEMLDQGNKKHYDLFDETYREFSSY 446
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} Length = 369 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
d2o6ia1453 Hypothetical protein EF1143 {Enterococcus faecalis 100.0
d2heka1369 Hypothetical protein aq_1910 {Aquifex aeolicus [Ta 100.0
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 98.38
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 98.34
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 98.3
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 98.24
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 98.24
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 97.89
d1taza_357 Catalytic domain of cyclic nucleotide phosphodiest 96.1
d1y2ka1326 Catalytic domain of cyclic nucleotide phosphodiest 96.04
d3dy8a1324 High-affinity cGMP-specific 3',5'-cyclic phosphodi 95.98
d1tbfa_326 cGMP-specific 3',5'-cyclic phosphodiesterase pde5a 95.49
d1u6za1197 Exopolyphosphatase Ppx C-terminal domain {Escheric 94.92
d1so2a_415 cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p 94.66
d1vqra_286 Hypothetical protein Cj0248 {Campylobacter jejuni 93.25
d2paqa1186 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562 89.08
d1ynba1167 Hypothetical protein AF1432 {Archaeon Archaeoglobu 87.18
d1xx7a_172 Oxetanocin-like protein PF0395 {Pyrococcus furiosu 86.15
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Hypothetical protein EF1143
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=1e-79  Score=649.85  Aligned_cols=295  Identities=28%  Similarity=0.422  Sum_probs=251.6

Q ss_pred             cccccccccCCCCCcccC-hHHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccC---
Q 039727           39 ERYSKHVHDNVHGNIYLD-PLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQG---  114 (480)
Q Consensus        39 ~~~~k~i~DpvhG~I~l~-~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~---  114 (480)
                      ..+.|+|+|||||+|+++ +.+++|||||+|||||+|+|||++++|||||+||||||||||||||++++++|+++++   
T Consensus        10 ~~~~k~~~Dpihg~I~~~~~~~~~lidt~~fQRLr~I~Qlg~~~~v~pgA~HtRfeHSLGv~~la~~~~~~l~~~~~~~~   89 (453)
T d2o6ia1          10 LPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEITRRICEIFQRNYSVER   89 (453)
T ss_dssp             EEEEEEEEETTTEEEEEEEHHHHHHHTSHHHHGGGGSBSSSGGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHHHHSBHHH
T ss_pred             CCCCcEEecCCcccEEeCHHHHHHHcCCHhHhhhcccccCCCcccccCCCccCchhHHHHHHHHHHHHHHHHHhcccccc
Confidence            456899999999999998 5789999999999999999999999999999999999999999999999999987754   


Q ss_pred             -CCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHH-------HHHhcCCCCChhhhh
Q 039727          115 -LELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDY-------IVDQHYIDIDSGRLD  186 (480)
Q Consensus       115 -~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~-------il~~~~~~~~~~~~~  186 (480)
                       .+.++++.+.+||++||||||||||||||+||..+        +|.||++|.+|+..       ++++.+.+. ++.+.
T Consensus        90 ~~~~~~~~~~~~~v~~AaLlHDiGHgPfSH~~E~~~--------~~~he~~~~~i~~~~~~~~~~~l~~~~~~~-~~~v~  160 (453)
T d2o6ia1          90 LGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIF--------DTNHEAITVQIITSPETEVYQILNRVSADF-PEKVA  160 (453)
T ss_dssp             HGGGSBCGGGHHHHHHHHHHTTTTCCTTHHHHHHHS--------CCCHHHHHHHHHHCTTSHHHHHHHTTCTTH-HHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHhccCcccccccccccc--------cccchHHHHHHHHhhhhhHHHHHHHhcccc-HHHHH
Confidence             24578999999999999999999999999999853        58999999999863       444444321 22233


Q ss_pred             hhhhhccCCCcccccchhhHHhhhhcCCCCccccccccccccccccCCCC-cchHHHhhcceEEECCeEEeecccHHHHH
Q 039727          187 REMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGC-NFQFERLMETMRVMGDEICYRAKDYLTVY  265 (480)
Q Consensus       187 ~~~I~~~~~~~~~~~~~~~l~~Iv~n~~~~lDvDrlDYl~RDs~~~Gv~~-~~D~~rLi~~~~v~~~~i~~~~k~~~~i~  265 (480)
                       ++|.+.       .+..++.++|+   |+|||||||||+|||++||+++ .+|++||+++++++++++|+..|++.++|
T Consensus       161 -~~i~~~-------~~~~~l~~~is---~~lD~DrlDYl~RDs~~~Gv~~g~~d~~rli~~~~~~~~~l~~~~k~~~~ie  229 (453)
T d2o6ia1         161 -SVITKQ-------YPNPQVVQMIS---SQIDADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVE  229 (453)
T ss_dssp             -HHHTTC-------SSCHHHHHHHS---SSSCHHHHHHHHHHHHHHTCGGGCCCHHHHHHHEEEETTEEEEEGGGHHHHH
T ss_pred             -HHHcCC-------Ccchhhhhhhc---cCcccchHhhhhhhhhhhccccCchhHHHHHHhCeeccceeEechhhHHHHH
Confidence             455442       23456888887   6999999999999999999997 69999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHhcCchhHHHHHHHHHHHHHhhhhhCCC---------------cCCCChHHHhhCCHHHHHHH-HhCC
Q 039727          266 KLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGIS---------------SSIQQPAEFWKLDDTIINAI-LADP  329 (480)
Q Consensus       266 ~~~~~R~~my~~VY~H~~~~~~e~ml~~al~~a~~~l~is---------------~~~~dp~~yl~LDD~il~~i-~~s~  329 (480)
                      +||.+|+.||++||+||+++++|.|+.++|.+|.+.+...               ....++++|+.|||..+..+ ....
T Consensus       230 ~~~~~R~~my~~VY~H~~~~~~e~ml~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ldD~~~~~~l~~~~  309 (453)
T d2o6ia1         230 DYIVSRYQMYVQVYFHPVSRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGVLSTYFTQWM  309 (453)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSSTTSCSCCCCTTTHHHHHTCCCHHHHHTCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhccchhhhcchHHHHHhhcCCCCHHHHHhCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999998766432               23457899999999866544 4333


Q ss_pred             CcccHHHHHHHHHhhcCCcceecc
Q 039727          330 RPELKKARDIILRVRRRQLYQFCN  353 (480)
Q Consensus       330 ~~~l~~a~~ll~ri~~R~Lyk~v~  353 (480)
                      +.....+++|++|+..|++||.+.
T Consensus       310 ~~~d~~l~~L~~r~l~R~l~k~~~  333 (453)
T d2o6ia1         310 DVPDSILGDLAKRFLMRKPLKSAT  333 (453)
T ss_dssp             SSSCHHHHHHHHHHHTTCCCEEEE
T ss_pred             hCCcHHHHHHHHHHHccccceeee
Confidence            333456789999999999999873
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure