Citrus Sinensis ID: 039743
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | 2.2.26 [Sep-21-2011] | |||||||
| O66601 | 510 | GMP synthase [glutamine-h | yes | no | 0.960 | 1.0 | 0.525 | 1e-154 | |
| Q3AD70 | 509 | GMP synthase [glutamine-h | yes | no | 0.951 | 0.992 | 0.511 | 1e-150 | |
| C0QYF1 | 514 | GMP synthase [glutamine-h | yes | no | 0.967 | 1.0 | 0.487 | 1e-149 | |
| Q1QKC3 | 540 | GMP synthase [glutamine-h | yes | no | 0.967 | 0.951 | 0.522 | 1e-148 | |
| Q6CU71 | 524 | GMP synthase [glutamine-h | yes | no | 0.975 | 0.988 | 0.511 | 1e-147 | |
| Q6BLS3 | 529 | GMP synthase [glutamine-h | yes | no | 0.966 | 0.969 | 0.519 | 1e-147 | |
| Q3AT13 | 511 | GMP synthase [glutamine-h | yes | no | 0.939 | 0.976 | 0.530 | 1e-146 | |
| A4SGJ0 | 513 | GMP synthase [glutamine-h | yes | no | 0.935 | 0.968 | 0.523 | 1e-146 | |
| Q8KFZ5 | 516 | GMP synthase [glutamine-h | yes | no | 0.952 | 0.980 | 0.524 | 1e-146 | |
| B0TI09 | 513 | GMP synthase [glutamine-h | yes | no | 0.962 | 0.996 | 0.500 | 1e-146 |
| >sp|O66601|GUAA_AQUAE GMP synthase [glutamine-hydrolyzing] OS=Aquifex aeolicus (strain VF5) GN=guaA PE=3 SV=1 | Back alignment and function desciption |
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Score = 545 bits (1405), Expect = e-154, Method: Compositional matrix adjust.
Identities = 279/531 (52%), Positives = 368/531 (69%), Gaps = 21/531 (3%)
Query: 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS 60
M+ +P +L++++GSQY LI RR+R L + S + +++I KNP +I SGGP S
Sbjct: 1 MQRRP--ILVVNFGSQYVQLIARRVRELGVYSEIVHWDTPVEEIKKKNPYGIIFSGGPAS 58
Query: 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS 120
V++ AP E GV +LGICYGLQ++ +L G V EKQEYGR + + +
Sbjct: 59 VYAEGAPLPDKRIYEL----GVPILGICYGLQVITHQLGGKVVRSEKQEYGRARLRIIKE 114
Query: 121 SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEV 180
IF + + VWMSH D+ V LP+GFEV+A S+ A + NREK+++G Q+HPEV
Sbjct: 115 DVIF--EGIPKESDVWMSHADKVVELPEGFEVLAVSENSPYAVIANREKKIYGFQFHPEV 172
Query: 181 THSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVA 240
TH+ G E L F++ VC W++ + + E+++ I+ TVG + VI ALSGGVDSTVA
Sbjct: 173 THTVFGKEMLANFIYGVCKAEKNWEMGDFIHEKIEEIRKTVG-DAKVIAALSGGVDSTVA 231
Query: 241 ATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300
A L H+AIGD+LHC F+D+GLLRYKERE V + L LP+T VDA+++FL KLKGV D
Sbjct: 232 AVLTHRAIGDKLHCFFIDHGLLRYKEREEVEKNL-RSLGLPLTVVDASEEFLEKLKGVED 290
Query: 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360
PE KRKIIG+ FI +F+ A +E +L+QGTLYPDV+ES G+ + I
Sbjct: 291 PEEKRKIIGRTFIEVFEREAKKIEG-----AEFLLQGTLYPDVVESAGIKGSAK-----I 340
Query: 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD 420
K+HHNVGGLP+ M LKL+EP + LFKDEVR++G++L VPE+ L+RHPFPGPGLA+R++G+
Sbjct: 341 KTHHNVGGLPERMNLKLLEPFRELFKDEVRKIGKLLGVPEEILRRHPFPGPGLAIRIIGE 400
Query: 421 VTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRA 480
V + L+ILR+ D IFIQ +K+ GLYD +WQAFAV LPV+SVGV GD RT+ VVALRA
Sbjct: 401 VNK-KDLEILRKADYIFIQELKKEGLYDRVWQAFAVLLPVKSVGVMGDVRTYEKVVALRA 459
Query: 481 VTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
V S DGMTADW + FLD V R+I N V GVNRVV DI+SKPPSTIEWE
Sbjct: 460 VESVDGMTADWARLPYDFLDRVMRRIINEVEGVNRVVYDISSKPPSTIEWE 510
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Catalyzes the synthesis of GMP from XMP. Aquifex aeolicus (strain VF5) (taxid: 224324) EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 2 |
| >sp|Q3AD70|GUAA_CARHZ GMP synthase [glutamine-hydrolyzing] OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=guaA PE=3 SV=1 | Back alignment and function description |
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Score = 531 bits (1369), Expect = e-150, Method: Compositional matrix adjust.
Identities = 268/524 (51%), Positives = 359/524 (68%), Gaps = 19/524 (3%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
V++LD+G QY+ LI RRIR L + L L+ I +NP ++ SGGP SV+ AP
Sbjct: 5 VIVLDFGGQYSQLIARRIRELKVYCEMLPYNTPLEKIVQENPGGIVFSGGPSSVYGEGAP 64
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNK 127
+ +LGICYG+QLM +L G+V+ E +EYG+ + + +F
Sbjct: 65 TVDPEIYRLNIP----ILGICYGMQLMAHQLGGIVRPAEGREYGKTPLFILNRDRLFAG- 119
Query: 128 KVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGM 187
+ ++ WMSHGD P+GF V A+++ +AA+ENRE+ L+ +Q+HPEV H+P+G
Sbjct: 120 -LNETEICWMSHGDFVAKAPEGFLVTAKTEYTPIAAMENRERNLYAVQFHPEVVHTPKGK 178
Query: 188 ETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKA 247
E L+ FL+++CG+ W +E+ + ++ IK+ VG E+ V+CALSGGVDS+VAA LVHKA
Sbjct: 179 EILKNFLYEICGLTPDWTMESFAQKAIREIKEQVG-EEKVVCALSGGVDSSVAAVLVHKA 237
Query: 248 IGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKI 307
IGD L C+FVD+GLLR E E V+ TF++ + + VDA +QFL+KLKGV DPE KRKI
Sbjct: 238 IGDNLTCIFVDHGLLRKGEAEEVVRTFKEQFQMNLVFVDAKEQFLAKLKGVRDPEQKRKI 297
Query: 308 IGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVG 367
IG EFI +F+ A KLG +LVQGTLYPDV+ES G + TIKSHHNVG
Sbjct: 298 IGHEFIRVFEEEA----AKLGDI-RFLVQGTLYPDVVES------GTATAATIKSHHNVG 346
Query: 368 GLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSL 427
GLP+DMK +LIEPLK LFKDEVR+LG L +PE + RHPFPGPGLAVRVLG++TE L
Sbjct: 347 GLPEDMKFQLIEPLKWLFKDEVRELGLELGLPESIVWRHPFPGPGLAVRVLGEITE-EKL 405
Query: 428 DILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGM 487
ILR+ D IFI +K++G Y WQAFAV ++SVGV GD+RT+++ +ALRAVTS+DGM
Sbjct: 406 AILREADYIFIDELKKSGWYRKTWQAFAVLPNLQSVGVMGDERTYAYTIALRAVTSEDGM 465
Query: 488 TADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
TADW ++ L+ ++ +I V+GVNRVV DITSKPP+TIEWE
Sbjct: 466 TADWVRLPYELLEKISARIVGEVKGVNRVVYDITSKPPATIEWE 509
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Catalyzes the synthesis of GMP from XMP. Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 2 |
| >sp|C0QYF1|GUAA_BRAHW GMP synthase [glutamine-hydrolyzing] OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=guaA PE=3 SV=1 | Back alignment and function description |
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Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/531 (48%), Positives = 362/531 (68%), Gaps = 17/531 (3%)
Query: 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS 60
M+N + VLILD+GSQ+T LITRRIR L++ S S+D I P+ +ILSGGP S
Sbjct: 1 MQNNIDKVLILDFGSQFTQLITRRIRELNVYSEIHPFHVSIDFIKEFKPKAIILSGGPSS 60
Query: 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS 120
V+ DAP E G+ +LGICYG+Q++V + G V+ +K+EYG+ EI +
Sbjct: 61 VYEEDAPKVDKQLFEL----GMPILGICYGMQIIVYSMGGKVESADKREYGKAEIEITNH 116
Query: 121 SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEV 180
IF K G +VWMSHGD +P+GFE++A++ +AA+EN++K ++ +Q+HPEV
Sbjct: 117 ESIF--KSFGKSNIVWMSHGDSIKSIPEGFELIAKTPNTELAAIENKQKNIYAIQFHPEV 174
Query: 181 THSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVA 240
H+ G++ + FLF++C W + + ++ E+K I++TVG + +VI LSGGVDS+VA
Sbjct: 175 VHTENGIKIIENFLFNICKCERNWNMGSFIEYEIKRIRETVG-DKNVILGLSGGVDSSVA 233
Query: 241 ATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300
A L+ KAIG +L C+FV+NGLLR E ++V++ F + ++ + VDA+ +FL KL GV D
Sbjct: 234 AVLIEKAIGKQLKCIFVNNGLLRKDEDKKVVEVFRDNFNIDLIYVDASKRFLDKLAGVTD 293
Query: 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360
PE KRK+IG EF+ +F+ A +E +L QGTLYPDVIES G+ S I
Sbjct: 294 PEQKRKVIGHEFVSVFNDEAKKIEN-----VGFLAQGTLYPDVIESVSLRGS----SAVI 344
Query: 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD 420
KSHHNVGGLPKDMK +L+EP + LFKDEVR++G L +PE + R PFPGPGLAVR+LGD
Sbjct: 345 KSHHNVGGLPKDMKFELLEPFRELFKDEVREIGLELKLPEDIVYRQPFPGPGLAVRILGD 404
Query: 421 VTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRA 480
+TE + IL++ D+I + IK+AGLY +WQ+FA+ LPV+SVGV GD RT+ V A+RA
Sbjct: 405 ITE-ERVKILQEADDIVVSEIKKAGLYRKLWQSFAILLPVKSVGVMGDGRTYEQVCAVRA 463
Query: 481 VTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
V S D MTADW ++ L ++ +I N V+G+NRVV DI+SKPP+TIEWE
Sbjct: 464 VESVDAMTADWAKIDYNVLGIISNRIINEVKGINRVVYDISSKPPATIEWE 514
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Catalyzes the synthesis of GMP from XMP. Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) (taxid: 565034) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 2 |
| >sp|Q1QKC3|GUAA_NITHX GMP synthase [glutamine-hydrolyzing] OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=guaA PE=3 SV=1 | Back alignment and function description |
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Score = 524 bits (1349), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/526 (52%), Positives = 351/526 (66%), Gaps = 12/526 (2%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
+LI+D+GSQ T LI RRIR + S + + P+ VILSGGP SV DAP
Sbjct: 25 ILIVDFGSQVTQLIARRIREEGVYSEIVPFQKAEAAFLEMKPKAVILSGGPASVLDKDAP 84
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIF-GN 126
A P L+ GV VLGICYG Q M Q+L G V+ G +E+GR I V + +F G
Sbjct: 85 AAPMSILK----AGVPVLGICYGEQTMAQQLGGTVEAGHHREFGRAAIEVTDTCALFEGV 140
Query: 127 KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEG 186
+ G H VWMSHGD LPDGF VA++Q +A + + +R + +Q+HPEV H+P+G
Sbjct: 141 WEKGGHYNVWMSHGDRVTKLPDGFRAVAKAQGSPIAVIADDARRFYAMQFHPEVVHTPDG 200
Query: 187 METLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHK 246
+ LR F+ V G+ W + +E ++ I+ VG + VIC LSGGVDS+VAA L+H+
Sbjct: 201 AKLLRNFVRKVAGLTGDWTMRAFREEAIEKIRAQVG-KGRVICGLSGGVDSSVAAILIHE 259
Query: 247 AIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRK 306
AIG++L CVFVD+G+LR E + V++ F ++P+ VDA+ QFL +L GV DPE KRK
Sbjct: 260 AIGEQLTCVFVDHGMLRKDEGKTVVELFRHHYNIPLVHVDASKQFLGELAGVTDPEMKRK 319
Query: 307 IIGKEFICIFDAFAHDLEQKLGKKPA-YLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHN 365
IG+ FI +F+A A + LGK A +L QGTLYPDVIES G S TIKSHHN
Sbjct: 320 TIGRLFIDVFEAEAKKI-AALGKGSAEFLAQGTLYPDVIESVSFTGG---PSVTIKSHHN 375
Query: 366 VGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGN 425
VGGLP M +KL+EPL+ LFKDEVR LGR L +PE F+ RHPFPGPGLA+R G++T
Sbjct: 376 VGGLPDRMNMKLVEPLRELFKDEVRALGRELGLPEIFVGRHPFPGPGLAIRCPGEITR-E 434
Query: 426 SLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQD 485
LDILR+ D ++I I++AGLYD IWQAFAV LPV++VGV GD RT+ +VV LRAVTS D
Sbjct: 435 KLDILREADAVYIDQIRKAGLYDKIWQAFAVLLPVKTVGVMGDGRTYEYVVGLRAVTSTD 494
Query: 486 GMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
GMTAD+Y F+ FL A I N V+GVNRVV D+TSKPP TIEWE
Sbjct: 495 GMTADFYAFDATFLGATATSIINEVKGVNRVVYDVTSKPPGTIEWE 540
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Catalyzes the synthesis of GMP from XMP. Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 2 |
| >sp|Q6CU71|GUAA_KLULA GMP synthase [glutamine-hydrolyzing] OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GUA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1348), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/532 (51%), Positives = 359/532 (67%), Gaps = 14/532 (2%)
Query: 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS 60
+ N + +L+LD+GSQY+HLITRR+R ++ + L T + D+ K P+ VILSGGP+S
Sbjct: 6 VSNVFDTILVLDFGSQYSHLITRRLREFNVYAEMLPCTQKIADLHWK-PKGVILSGGPYS 64
Query: 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVE-R 119
V+ DAP + GV +LGICYGLQ + + V GEK+EYG + VE +
Sbjct: 65 VYEKDAPHVDKAIFDL----GVPILGICYGLQEIAWINNTEVGRGEKREYGPATLRVEDK 120
Query: 120 SSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPE 179
S +F N H VWMSH D+ LP GF++ A S+ + N +K+++G+Q+HPE
Sbjct: 121 SCPLFANVD---HSTVWMSHHDKVHNLPAGFKITATSENSPFCGIANEDKQIYGIQFHPE 177
Query: 180 VTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTV 239
VTHS +G LR F D+C + W +EN +D E+ I++ VG + VI A+SGGVDSTV
Sbjct: 178 VTHSTQGKTLLRNFAVDICKASQSWNMENFIDTEINRIRELVGPDAEVIGAVSGGVDSTV 237
Query: 240 AATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVI 299
AA L+ +AIGDR H + VDNG+LR E V T + L + +T VDA+D+FL KLKGV
Sbjct: 238 AAKLMDRAIGDRFHAIMVDNGVLRLNEAATVKKTLGEGLGINLTVVDASDEFLDKLKGVT 297
Query: 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHT 359
DPE KRKIIG FI +F+ A ++ K GK+ +L+QGTLYPDVIES G S T
Sbjct: 298 DPEKKRKIIGNTFIHVFEREAAKIQPKNGKEIEFLLQGTLYPDVIESISFKGP----SQT 353
Query: 360 IKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLG 419
IK+HHNVGGL ++MKLKLIEPL+ LFKDEVR+LG +L + + + RHPFPGPG+A+RVLG
Sbjct: 354 IKTHHNVGGLLENMKLKLIEPLRELFKDEVRELGELLGISHELVWRHPFPGPGIAIRVLG 413
Query: 420 DVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALR 479
+VT + I R+ D I+I+ I++AGLY+ I QAFA LPV+SVGV GDQRT+ V+ALR
Sbjct: 414 EVTR-EQVAIARKADYIYIEEIRKAGLYNNISQAFACLLPVKSVGVMGDQRTYEQVIALR 472
Query: 480 AVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
A+ + D MTADWY FEH FL VA +I N V GV RV DITSKPP+T+EWE
Sbjct: 473 AIETTDFMTADWYPFEHSFLKKVASRIVNEVDGVARVTYDITSKPPATVEWE 524
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Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 2 |
| >sp|Q6BLS3|GUAA_DEBHA GMP synthase [glutamine-hydrolyzing] OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GUA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 521 bits (1341), Expect = e-147, Method: Compositional matrix adjust.
Identities = 274/527 (51%), Positives = 354/527 (67%), Gaps = 14/527 (2%)
Query: 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD 65
+ +L+LD+GSQY+HLITRR+R ++ + L T + ++T K P+ +ILSGGP+SV+
Sbjct: 16 DTILVLDFGSQYSHLITRRLREFNVYAEMLPCTQKISELTWK-PKGIILSGGPYSVYEDG 74
Query: 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSS-GIF 124
+P + V +LGICYG+Q + V G+K+EYG + VE SS +F
Sbjct: 75 SPHVDHDIFKL----NVPILGICYGMQELAWINGKGVARGDKREYGPATLNVEDSSCSLF 130
Query: 125 GNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSP 184
K V H QV WMSHGD+ LP GF+VVA S AA+ N ++ +FG+Q+HPEVTH+
Sbjct: 131 --KGVDHSQV-WMSHGDKLHALPTGFKVVATSDNSPFAAISNEKENIFGIQFHPEVTHTK 187
Query: 185 EGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLV 244
+G LR F D+C + W +EN +D E+ I+ VG VI A+SGGVDSTV A ++
Sbjct: 188 QGKVLLRNFAIDICQASNNWTMENFIDTEIARIQKLVGPTAEVIGAVSGGVDSTVGAKIM 247
Query: 245 HKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETK 304
+AIGDR H ++VDNGL+R E E+V T + L + +T VDATD FL KL+GV DPE K
Sbjct: 248 KEAIGDRFHAIYVDNGLMRLNETEQVYKTLTEGLGINLTVVDATDLFLGKLQGVTDPEKK 307
Query: 305 RKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHH 364
RKIIG FI +F+A A ++ G++ YL+QGTLYPDVIES G S TIK+HH
Sbjct: 308 RKIIGNNFIHVFEAEAAKIKPASGQEIEYLLQGTLYPDVIESISFKGP----SQTIKTHH 363
Query: 365 NVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEG 424
NVGGL +DMKLKLIEPL+ LFKDEVR LG I+ VP + RHPFPGPGLA+RVLG+VT
Sbjct: 364 NVGGLLEDMKLKLIEPLRELFKDEVRHLGEIMGVPHDLVWRHPFPGPGLAIRVLGEVTR- 422
Query: 425 NSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQ 484
L I R+ D IFI+ I++AGLY I QAFA LPV+SVGV GDQRT+ V+ALRA+ +
Sbjct: 423 EQLKIAREADNIFIEEIRKAGLYKDISQAFAALLPVKSVGVMGDQRTYEQVIALRAIETT 482
Query: 485 DGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
D MTADW+ FE FL A +I N V GV RV DITSKPP+T+EWE
Sbjct: 483 DFMTADWFVFEAAFLKKTASRIVNEVDGVARVTYDITSKPPATVEWE 529
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Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 2 |
| >sp|Q3AT13|GUAA_CHLCH GMP synthase [glutamine-hydrolyzing] OS=Chlorobium chlorochromatii (strain CaD3) GN=guaA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1338), Expect = e-146, Method: Compositional matrix adjust.
Identities = 283/533 (53%), Positives = 352/533 (66%), Gaps = 34/533 (6%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
VL+LD+GSQYT LI RRIR L+I S L D I P+ +ILSGGP+SV+ D
Sbjct: 4 VLVLDFGSQYTQLIARRIRELNIYSEILPYNTPADTIRTHQPKAIILSGGPNSVY--DQT 61
Query: 68 AF---PAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS--SG 122
AF PA F S G+ VLGICYGLQ + + GVV K E+GR +ILVE+ +
Sbjct: 62 AFMPDPAIF-----SLGIPVLGICYGLQAIAKHFGGVVASSNKHEFGRSKILVEQQGDNP 116
Query: 123 IFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE----NREKRLFGLQYHP 178
+F N + VWMSHGD+ + LP+GF A S + A E N ++GLQ+HP
Sbjct: 117 LFQNIP---NSDVWMSHGDKVMQLPEGFRATASSDNSEICAFESTGVNSPAHIYGLQFHP 173
Query: 179 EVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDST 238
EV H+ G E L FL ++ + W ++ ++ +++ I+ G + VIC +SGGVDST
Sbjct: 174 EVQHTLYGKEMLGNFLLNIAAITPDWSSKSFIEHQIEEIRRKAG-NNTVICGISGGVDST 232
Query: 239 VAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGV 298
VAA LV KAIG +LHCVFVDNGLLR E E+VM F K L L +T D++D FL +LKGV
Sbjct: 233 VAAVLVSKAIGKQLHCVFVDNGLLRKNEAEKVMH-FLKPLGLHITLADSSDLFLKRLKGV 291
Query: 299 IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSH 358
PE KRKIIG+ FI +F+ H +LVQGTLYPDVIES G S
Sbjct: 292 ASPEKKRKIIGRTFIQVFEEQIH--------HEKFLVQGTLYPDVIESISVKGP----SE 339
Query: 359 TIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVL 418
TIKSHHNVGGLPK MKLKLIEPL+ LFKDEVR +GR L +PE L RHPFPGPGLAVRVL
Sbjct: 340 TIKSHHNVGGLPKRMKLKLIEPLRELFKDEVRAVGRELGIPEDILMRHPFPGPGLAVRVL 399
Query: 419 GDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVAL 478
G +T L+ILR+ DEI+I+ ++ +GLY +WQAFAV LPV+SVGV GD+RT+ +V+AL
Sbjct: 400 GSLTH-ERLEILREADEIYIEELQASGLYSKVWQAFAVLLPVQSVGVMGDKRTYENVLAL 458
Query: 479 RAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
RAV S DGMTADW H FL V+ +I N VRG+NRV DI+SKPP+TIEWE
Sbjct: 459 RAVESSDGMTADWAPLPHDFLARVSNRIINEVRGINRVAYDISSKPPATIEWE 511
|
Catalyzes the synthesis of GMP from XMP. Chlorobium chlorochromatii (strain CaD3) (taxid: 340177) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 2 |
| >sp|A4SGJ0|GUAA_PROVI GMP synthase [glutamine-hydrolyzing] OS=Prosthecochloris vibrioformis (strain DSM 265) GN=guaA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust.
Identities = 281/537 (52%), Positives = 355/537 (66%), Gaps = 40/537 (7%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
VL+LD+GSQYT LI RRIR L I S L + + + I NPR +ILSGGP SV+ D+
Sbjct: 4 VLVLDFGSQYTQLIARRIRELGIYSEILPYSTTPETIREHNPRAIILSGGPTSVYG-DSA 62
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNK 127
P + S G+ +LGICYGLQ + G V+ KQE+GR +ILV+RS+
Sbjct: 63 ILPHPGI---FSLGLPILGICYGLQAIANHFGGAVESSSKQEFGRAKILVDRSAD----- 114
Query: 128 KVGHHQV---------VWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKR----LFGL 174
H + VWMSHGD+ +P+GF V A S + A+E+ + ++GL
Sbjct: 115 ---HESLLFEGFPDSDVWMSHGDKVTRMPEGFRVTASSGNSEMCAIESYGSKAALKIYGL 171
Query: 175 QYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGG 234
Q+HPEV HS G + L FL ++ G+ W ++ +D +++ I++ G + VIC +SGG
Sbjct: 172 QFHPEVQHSLYGKQLLGNFLLNIAGITPDWSSKSFIDHQIEDIRERAG-NNTVICGISGG 230
Query: 235 VDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSK 294
VDSTVAA LV KAIG +LHCVFVDNGLLR E E+VM F K L L VT D+ D FL++
Sbjct: 231 VDSTVAAVLVSKAIGKQLHCVFVDNGLLRKNEAEKVMQ-FLKPLGLKVTLADSRDLFLTR 289
Query: 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGR 354
LKGV PE KRKIIG+ FI +F+ H E+K +LVQGTLYPDVIES G
Sbjct: 290 LKGVASPEKKRKIIGRTFIRVFEEHIH--EEK------FLVQGTLYPDVIESVSVKGP-- 339
Query: 355 THSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLA 414
S TIKSHHNVGGLPK MKLKLIEPL+ LFKDEVR +GR L + E L RHPFPGPGLA
Sbjct: 340 --SETIKSHHNVGGLPKRMKLKLIEPLRELFKDEVRAVGRELGIAEDILMRHPFPGPGLA 397
Query: 415 VRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSH 474
VRVLG V ++IL+ DEIFI+ +K +GLY +WQAF+V LPV+SVGV GD+RT+ +
Sbjct: 398 VRVLGSVNP-ERVEILQNADEIFIEELKSSGLYQQVWQAFSVLLPVQSVGVMGDKRTYEN 456
Query: 475 VVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
V+ALRAV S DGMTADW + H FL V+ +I N VRG+NRV DI+SKPP+TIEWE
Sbjct: 457 VLALRAVESTDGMTADWAHLPHDFLAKVSNRIINEVRGINRVAYDISSKPPATIEWE 513
|
Catalyzes the synthesis of GMP from XMP. Prosthecochloris vibrioformis (strain DSM 265) (taxid: 290318) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 2 |
| >sp|Q8KFZ5|GUAA_CHLTE GMP synthase [glutamine-hydrolyzing] OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=guaA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 518 bits (1334), Expect = e-146, Method: Compositional matrix adjust.
Identities = 284/541 (52%), Positives = 355/541 (65%), Gaps = 35/541 (6%)
Query: 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS 60
M + V++LD+GSQYT LI RRIR + I S + I A P+ +ILSGGP+S
Sbjct: 1 MATSLQSVIVLDFGSQYTQLIARRIREIGIYSEIFPYHTKAETIRAHQPKAIILSGGPNS 60
Query: 61 VHSPDAPAF---PAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILV 117
V+ D AF P F S GV VLGICYGLQ + + G V+ KQE+GR ++LV
Sbjct: 61 VY--DEKAFMPDPEVF-----SLGVPVLGICYGLQAIAKHFGGNVESSSKQEFGRAKMLV 113
Query: 118 ---ERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVEN----REKR 170
E S +F + VWMSHGD+ LP+GF V A + V A+E+ +
Sbjct: 114 NHDESESLLFRDIP---DSDVWMSHGDKVTQLPEGFRVTASTANAEVCAIESFGSKAALK 170
Query: 171 LFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICA 230
++GLQ+HPEV HS G + L FL D+ G+ W ++ + +++ IK G + V+C
Sbjct: 171 VYGLQFHPEVQHSLYGKQLLSNFLIDIAGITPDWSPKSFIQHQIEEIKRVAG-DSTVVCG 229
Query: 231 LSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ 290
+SGGVDSTVAA LV KAIGD+LHCVFVDNGLLR E +VM+ F K L L ++ VDA+D
Sbjct: 230 ISGGVDSTVAAVLVSKAIGDKLHCVFVDNGLLRKDEAVKVME-FLKPLGLNISLVDASDL 288
Query: 291 FLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPP 350
FL +LKGV PE KRKIIG+ FI +F+ HD +LVQGTLYPDVIES
Sbjct: 289 FLGRLKGVASPEKKRKIIGRTFIQVFEKNIHD--------EKFLVQGTLYPDVIESVSVK 340
Query: 351 GTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPG 410
G S TIKSHHNVGGLPK MKLKLIEPL+ LFKDEVR +GR L + E L RHPFPG
Sbjct: 341 GP----SETIKSHHNVGGLPKRMKLKLIEPLRELFKDEVRAVGRELGIAEDILMRHPFPG 396
Query: 411 PGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQR 470
PGLAVRVLG +T LD+LR D+IFI +K +GLY +WQAF+V LPV+SVGV GD+R
Sbjct: 397 PGLAVRVLGSLTR-ERLDVLRDADQIFIDELKSSGLYSKVWQAFSVLLPVQSVGVMGDKR 455
Query: 471 THSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEW 530
T+ +V+ALRAV S DGMTADW + H FL V+ +I N VRG+NRVV DI+SKPP+TIEW
Sbjct: 456 TYENVLALRAVESTDGMTADWAHLPHDFLAKVSNRIINEVRGINRVVYDISSKPPATIEW 515
Query: 531 E 531
E
Sbjct: 516 E 516
|
Catalyzes the synthesis of GMP from XMP. Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 2 |
| >sp|B0TI09|GUAA_HELMI GMP synthase [glutamine-hydrolyzing] OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=guaA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 518 bits (1333), Expect = e-146, Method: Compositional matrix adjust.
Identities = 267/533 (50%), Positives = 357/533 (66%), Gaps = 22/533 (4%)
Query: 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS 60
M E +L+LD+G QY LI RR+R L + T S+D I NP+ +I +GGP S
Sbjct: 1 MAKPHETILVLDFGGQYNQLIARRVRELHVYCEMHPYTISVDAIREMNPKGIIFTGGPAS 60
Query: 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS 120
V+ APA + G+ +LGICYG+QLMV +L G V E +EYG+ + + S
Sbjct: 61 VYEEKAPAVDPAIYDL----GIPILGICYGMQLMVNQLGGKVGRAESREYGKASLTITAS 116
Query: 121 SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEV 180
G F + G Q WMSHGD+ VLP GF ++ AA+ + +R +G+Q+HPEV
Sbjct: 117 EGPFAGME-GDVQC-WMSHGDKVEVLPHGFVGSGKTDHAPFAAMADPVRRFYGVQFHPEV 174
Query: 181 THSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVA 240
H+P+GM+ +R FLF VCG W +EN ++E+V I+ VG V+CALSGGVDS+VA
Sbjct: 175 RHTPQGMDMMRNFLFGVCGCTGEWTMENFIEEQVAAIRARVG-SGKVLCALSGGVDSSVA 233
Query: 241 ATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300
A LVH+A+G++L CV+VD+G +R E ER++ TF +L + + V+A+++F++K+ GV D
Sbjct: 234 ALLVHRAVGEQLTCVYVDHGFMRLNESERIIKTFRDELGMNLIAVEASERFMAKVAGVSD 293
Query: 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360
PETKRK IG EFI +F+ A L Q +LVQGTLYPDV+ES G + + TI
Sbjct: 294 PETKRKSIGNEFIRVFEEEAAKLGQV-----DFLVQGTLYPDVVES------GTSTAETI 342
Query: 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD 420
K+HHNVGGLP+DMK +LIEPL+ LFKDEVR++G+ L +PE + R PFPGPGLA+RVLG+
Sbjct: 343 KTHHNVGGLPEDMKFELIEPLRTLFKDEVREVGQRLGLPEDIVWRQPFPGPGLAIRVLGE 402
Query: 421 VTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLP--VRSVGVQGDQRTHSHVVAL 478
+T+ SLDILR D+I Q IK+AGLY IWQ+F V LP VRSVGV GD RT+ + L
Sbjct: 403 ITK-ESLDILRHADDIVFQEIKKAGLYRQIWQSFVV-LPTTVRSVGVMGDGRTYEYPAIL 460
Query: 479 RAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
RAVTS D MTADW ++ L+ ++ +I N V+GVNRVV DITSKPP TIEWE
Sbjct: 461 RAVTSDDAMTADWARLPYELLEKISNRIVNEVKGVNRVVYDITSKPPGTIEWE 513
|
Catalyzes the synthesis of GMP from XMP. Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) (taxid: 498761) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 2 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | ||||||
| TAIR|locus:2026709 | 534 | AT1G63660 [Arabidopsis thalian | 0.994 | 0.988 | 0.782 | 2.6e-228 | |
| CGD|CAL0005313 | 530 | GUA1 [Candida albicans (taxid: | 0.964 | 0.966 | 0.498 | 2e-127 | |
| UNIPROTKB|Q5APF2 | 530 | GUA1 "GMP synthase [glutamine- | 0.964 | 0.966 | 0.498 | 2e-127 | |
| TIGR_CMR|BA_0268 | 512 | BA_0268 "GMP synthase" [Bacill | 0.964 | 1.0 | 0.478 | 2.9e-126 | |
| TIGR_CMR|CHY_1068 | 509 | CHY_1068 "GMP synthase" [Carbo | 0.815 | 0.850 | 0.542 | 7.8e-126 | |
| SGD|S000004830 | 525 | GUA1 "GMP synthase" [Saccharom | 0.975 | 0.986 | 0.475 | 3.9e-124 | |
| POMBASE|SPAP7G5.02c | 539 | gua2 "GMP synthase [glutamine- | 0.969 | 0.955 | 0.479 | 4.4e-123 | |
| TIGR_CMR|ECH_0123 | 526 | ECH_0123 "GMP synthase" [Ehrli | 0.962 | 0.971 | 0.483 | 3.1e-122 | |
| TIGR_CMR|DET_0836 | 533 | DET_0836 "GMP synthase" [Dehal | 0.966 | 0.962 | 0.474 | 7.4e-121 | |
| TIGR_CMR|GSU_2194 | 520 | GSU_2194 "GMP synthase" [Geoba | 0.962 | 0.982 | 0.486 | 4.1e-120 |
| TAIR|locus:2026709 AT1G63660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2203 (780.6 bits), Expect = 2.6e-228, P = 2.6e-228
Identities = 413/528 (78%), Positives = 468/528 (88%)
Query: 4 KPELVLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHS 63
KP+ VLILDYGSQYTH IT+ NPRVVILSGGPHSVH+
Sbjct: 7 KPDTVLILDYGSQYTHLITRRIRSLNVFSLVISGTSSLKSITSYNPRVVILSGGPHSVHA 66
Query: 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGI 123
DAP+FP GF+EWA SNGV VLGICYGLQL+VQKL GVV GE +EYG+MEI V+ S I
Sbjct: 67 LDAPSFPEGFIEWAESNGVSVLGICYGLQLIVQKLGGVVVEGESKEYGKMEIEVKGKSEI 126
Query: 124 FGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183
FG++ G Q+VWMSHGDEAV LP+GFEVVA+S QGAVAA+E+R+K+++GLQYHPEVTHS
Sbjct: 127 FGSESGGEKQMVWMSHGDEAVKLPEGFEVVAQSAQGAVAALESRKKKIYGLQYHPEVTHS 186
Query: 184 PEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATL 243
P+GMETLR+FLFDVCGV+A WK+E++++EE+K I TV ++HVICALSGGVDSTVAATL
Sbjct: 187 PKGMETLRHFLFDVCGVSADWKMEDLMEEEIKVINKTVASDEHVICALSGGVDSTVAATL 246
Query: 244 VHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPET 303
VHKAIGDRLHC+FVDNGLLRYKE+ERVMDTFE+DLHLPVTCVDA+++FLS+LKGV+DPET
Sbjct: 247 VHKAIGDRLHCIFVDNGLLRYKEQERVMDTFERDLHLPVTCVDASERFLSELKGVVDPET 306
Query: 304 KRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363
KRKIIG+EFI IFD FA +LE+K GKKPA+LVQGTLYPDVIESCPPPGT RTHSHTIKSH
Sbjct: 307 KRKIIGREFINIFDQFAQELEKKHGKKPAFLVQGTLYPDVIESCPPPGTDRTHSHTIKSH 366
Query: 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTE 423
HNVGGLPKDMKLKLIEPLKLLFKDEVR+LGRILNVP FLKRHPFPGPGLAVRVLGDVT+
Sbjct: 367 HNVGGLPKDMKLKLIEPLKLLFKDEVRELGRILNVPVGFLKRHPFPGPGLAVRVLGDVTQ 426
Query: 424 GNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTS 483
GN+L++LRQVDEIFIQSI++AGLYD IWQAFAVFLPVRSVGVQGD+RTHSHVVALRAVTS
Sbjct: 427 GNALEVLRQVDEIFIQSIRDAGLYDSIWQAFAVFLPVRSVGVQGDKRTHSHVVALRAVTS 486
Query: 484 QDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
QDGMTADW+ FEHKFLDDV+RKICN+V+GVNRVV DITSKPPSTIEWE
Sbjct: 487 QDGMTADWFNFEHKFLDDVSRKICNSVQGVNRVVLDITSKPPSTIEWE 534
|
|
| CGD|CAL0005313 GUA1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 263/528 (49%), Positives = 343/528 (64%)
Query: 6 ELVLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPD 65
+ +L+LD+GSQY+H +++ K P+ +ILSGGP+SV++ D
Sbjct: 17 DTILVLDFGSQYSHLITRRLREFNVYAEMLPCTQKIAELSWK-PKGIILSGGPYSVYAED 75
Query: 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGV-VKVGEKQEYGRMEILVERSS-GI 123
AP + GV +LGICYG+Q + ++G V G+K+EYG + VE +
Sbjct: 76 APHVDHDIFKL----GVPILGICYGMQELAW-INGKGVARGDKREYGPATLNVEDPECAL 130
Query: 124 FGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183
F K V H QV WMSHGD+ LP GF+VVA S + N + ++G+Q+HPEVTH+
Sbjct: 131 F--KGVDHSQV-WMSHGDKLHALPTGFKVVATSDNSPFCGISNESEHIYGIQFHPEVTHT 187
Query: 184 PEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATL 243
+G + L+ F D+C W +EN +D E+ IK VG VI A+SGGVDSTV A +
Sbjct: 188 VQGKKLLKNFAVDICQAKTNWSMENFIDTEIARIKKLVGPTAEVIGAVSGGVDSTVGAKI 247
Query: 244 VHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPET 303
+ +AIGDR H ++VDNG++R E E V T ++ L + +T VDA D FL +LKGV DPE
Sbjct: 248 MKEAIGDRFHAIYVDNGVMRKNETESVKKTLDEGLGINLTVVDAGDLFLGRLKGVTDPEK 307
Query: 304 KRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363
KRKIIG FI +F+ A ++ + G + YL+QGTLYPDVIES G S TIK+H
Sbjct: 308 KRKIIGNTFIHVFEEEAAKIKPRDGSEIEYLLQGTLYPDVIESISFKGP----SQTIKTH 363
Query: 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTE 423
HNVGGL +DMKLKLIEPL+ LFKDEVR LG +L VPE + RHPFPGPGLA+RVLG+VT+
Sbjct: 364 HNVGGLLEDMKLKLIEPLRELFKDEVRHLGELLGVPEDLVWRHPFPGPGLAIRVLGEVTK 423
Query: 424 GNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTS 483
+ I R+ D IFI+ IK+AGLY I QAFA LPV+SVGV GDQRT+ V+ALRA+ +
Sbjct: 424 -EQVKIAREADAIFIEEIKKAGLYRQISQAFAALLPVKSVGVMGDQRTYEQVIALRAIET 482
Query: 484 QDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
D MTADW+ FE FL VA +I N V GV RV DITSKPP+T+EWE
Sbjct: 483 LDFMTADWFIFEAAFLKKVASRIVNEVDGVARVTYDITSKPPATVEWE 530
|
|
| UNIPROTKB|Q5APF2 GUA1 "GMP synthase [glutamine-hydrolyzing]" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 263/528 (49%), Positives = 343/528 (64%)
Query: 6 ELVLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPD 65
+ +L+LD+GSQY+H +++ K P+ +ILSGGP+SV++ D
Sbjct: 17 DTILVLDFGSQYSHLITRRLREFNVYAEMLPCTQKIAELSWK-PKGIILSGGPYSVYAED 75
Query: 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGV-VKVGEKQEYGRMEILVERSS-GI 123
AP + GV +LGICYG+Q + ++G V G+K+EYG + VE +
Sbjct: 76 APHVDHDIFKL----GVPILGICYGMQELAW-INGKGVARGDKREYGPATLNVEDPECAL 130
Query: 124 FGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183
F K V H QV WMSHGD+ LP GF+VVA S + N + ++G+Q+HPEVTH+
Sbjct: 131 F--KGVDHSQV-WMSHGDKLHALPTGFKVVATSDNSPFCGISNESEHIYGIQFHPEVTHT 187
Query: 184 PEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATL 243
+G + L+ F D+C W +EN +D E+ IK VG VI A+SGGVDSTV A +
Sbjct: 188 VQGKKLLKNFAVDICQAKTNWSMENFIDTEIARIKKLVGPTAEVIGAVSGGVDSTVGAKI 247
Query: 244 VHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPET 303
+ +AIGDR H ++VDNG++R E E V T ++ L + +T VDA D FL +LKGV DPE
Sbjct: 248 MKEAIGDRFHAIYVDNGVMRKNETESVKKTLDEGLGINLTVVDAGDLFLGRLKGVTDPEK 307
Query: 304 KRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363
KRKIIG FI +F+ A ++ + G + YL+QGTLYPDVIES G S TIK+H
Sbjct: 308 KRKIIGNTFIHVFEEEAAKIKPRDGSEIEYLLQGTLYPDVIESISFKGP----SQTIKTH 363
Query: 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTE 423
HNVGGL +DMKLKLIEPL+ LFKDEVR LG +L VPE + RHPFPGPGLA+RVLG+VT+
Sbjct: 364 HNVGGLLEDMKLKLIEPLRELFKDEVRHLGELLGVPEDLVWRHPFPGPGLAIRVLGEVTK 423
Query: 424 GNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTS 483
+ I R+ D IFI+ IK+AGLY I QAFA LPV+SVGV GDQRT+ V+ALRA+ +
Sbjct: 424 -EQVKIAREADAIFIEEIKKAGLYRQISQAFAALLPVKSVGVMGDQRTYEQVIALRAIET 482
Query: 484 QDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
D MTADW+ FE FL VA +I N V GV RV DITSKPP+T+EWE
Sbjct: 483 LDFMTADWFIFEAAFLKKVASRIVNEVDGVARVTYDITSKPPATVEWE 530
|
|
| TIGR_CMR|BA_0268 BA_0268 "GMP synthase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 254/531 (47%), Positives = 342/531 (64%)
Query: 1 MENKPELVLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHS 60
M+ + + +++LD+GSQY ++I A NP+ +I SGGP+S
Sbjct: 1 MKKQHDTIIVLDFGSQYNQLIARRIREFGVYSELHPHTITAEEIKAMNPKGIIFSGGPNS 60
Query: 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS 120
V+ A E G+ + GICYG+QLM Q+ G V+ +EYG+ + VE
Sbjct: 61 VYGEGALHCD----EKIFDLGLPIFGICYGMQLMTQQFGGTVERANHREYGKAVLKVENE 116
Query: 121 SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEV 180
S ++ N + QVVWMSHGD LP+GF V A S+ +A + N K L+G+Q+HPEV
Sbjct: 117 SKLYAN--LPEEQVVWMSHGDLVTGLPEGFVVDATSESCPIAGMSNEAKNLYGVQFHPEV 174
Query: 181 THSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVA 240
HS G + ++ F+F VCG + GW +EN ++ E++ I++TVG + V+CALSGGVDS+V
Sbjct: 175 RHSEHGNDLIKNFVFGVCGCSEGWNMENFIEVELEKIRETVG-DKKVLCALSGGVDSSVV 233
Query: 241 ATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300
A L+HKAIGD+L C+FVD+GLLR E E VM TF + H+ V VDA ++F++KLKGV D
Sbjct: 234 AVLIHKAIGDQLTCIFVDHGLLRKGEAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVED 293
Query: 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360
PE KRKIIG EFI +FD A LE G +L QGTLY D++ES G + TI
Sbjct: 294 PEQKRKIIGNEFIYVFDDEASKLE---GMD--FLAQGTLYTDIVES------GTATAQTI 342
Query: 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD 420
KSHHNVGGLP+DM+ KLIEPL LFKDEVR LG L +P++ + R PFPGPGL +RVLG+
Sbjct: 343 KSHHNVGGLPEDMQFKLIEPLNTLFKDEVRVLGSELGIPDEIVWRQPFPGPGLGIRVLGE 402
Query: 421 VTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRA 480
+TE L+I+R+ D I + I +AGL IWQ F +RSVGV GD+RT+ + V +RA
Sbjct: 403 ITE-EKLEIVRESDAILREEIIKAGLDREIWQYFTALPGMRSVGVMGDERTYDYTVGIRA 461
Query: 481 VTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
VTS DGMTADW L+ ++ +I N V+ VNR+V D+TSKPP+TIEWE
Sbjct: 462 VTSIDGMTADWARIPWDVLEKISVRIVNEVKHVNRIVYDVTSKPPATIEWE 512
|
|
| TIGR_CMR|CHY_1068 CHY_1068 "GMP synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 243/448 (54%), Positives = 323/448 (72%)
Query: 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA 143
+LGICYG+QLM +L G+V+ E +EYG+ + + +F + ++ WMSHGD
Sbjct: 77 ILGICYGMQLMAHQLGGIVRPAEGREYGKTPLFILNRDRLFAG--LNETEICWMSHGDFV 134
Query: 144 VVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAG 203
P+GF V A+++ +AA+ENRE+ L+ +Q+HPEV H+P+G E L+ FL+++CG+
Sbjct: 135 AKAPEGFLVTAKTEYTPIAAMENRERNLYAVQFHPEVVHTPKGKEILKNFLYEICGLTPD 194
Query: 204 WKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR 263
W +E+ + ++ IK+ VG E+ V+CALSGGVDS+VAA LVHKAIGD L C+FVD+GLLR
Sbjct: 195 WTMESFAQKAIREIKEQVG-EEKVVCALSGGVDSSVAAVLVHKAIGDNLTCIFVDHGLLR 253
Query: 264 YKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDL 323
E E V+ TF++ + + VDA +QFL+KLKGV DPE KRKIIG EFI +F+ A
Sbjct: 254 KGEAEEVVRTFKEQFQMNLVFVDAKEQFLAKLKGVRDPEQKRKIIGHEFIRVFEEEA--- 310
Query: 324 EQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKL 383
KLG +LVQGTLYPDV+ES GT + TIKSHHNVGGLP+DMK +LIEPLK
Sbjct: 311 -AKLGDI-RFLVQGTLYPDVVES----GTAT--AATIKSHHNVGGLPEDMKFQLIEPLKW 362
Query: 384 LFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKE 443
LFKDEVR+LG L +PE + RHPFPGPGLAVRVLG++TE L ILR+ D IFI +K+
Sbjct: 363 LFKDEVRELGLELGLPESIVWRHPFPGPGLAVRVLGEITE-EKLAILREADYIFIDELKK 421
Query: 444 AGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVA 503
+G Y WQAFAV ++SVGV GD+RT+++ +ALRAVTS+DGMTADW ++ L+ ++
Sbjct: 422 SGWYRKTWQAFAVLPNLQSVGVMGDERTYAYTIALRAVTSEDGMTADWVRLPYELLEKIS 481
Query: 504 RKICNTVRGVNRVVQDITSKPPSTIEWE 531
+I V+GVNRVV DITSKPP+TIEWE
Sbjct: 482 ARIVGEVKGVNRVVYDITSKPPATIEWE 509
|
|
| SGD|S000004830 GUA1 "GMP synthase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
Identities = 253/532 (47%), Positives = 341/532 (64%)
Query: 1 MENKPELVLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHS 60
+ N + +L+LD+GSQY+H ++ P+ VILSGGP+S
Sbjct: 7 VSNMFDTILVLDFGSQYSHLITRRLREFNIYAEMLPCTQKISEL-GWTPKGVILSGGPYS 65
Query: 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEI-LVER 119
V++ DAP + V +LGICYG+Q + V G+K+EYG + +++
Sbjct: 66 VYAEDAPHVDHAIFDL----NVPILGICYGMQELAWINGKQVGRGDKREYGPATLKVIDD 121
Query: 120 SSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPE 179
S+ +F K + VWMSHGD+ LP G++ +A S + + K ++G+Q+HPE
Sbjct: 122 SNSLF---KGMNDSTVWMSHGDKLHGLPTGYKTIATSDNSPYCGIVHETKPIYGIQFHPE 178
Query: 180 VTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTV 239
VTHS +G L+ F D+C W +EN +D E+ I+ VG VI A+SGGVDSTV
Sbjct: 179 VTHSTQGKTLLKNFAVDLCHAKQNWTMENFIDTEINRIRKLVGPTAEVIGAVSGGVDSTV 238
Query: 240 AATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVI 299
A+ L+ +AIGDR H + VDNG+LR E V T + L + + VDA+++FLSKLKGV
Sbjct: 239 ASKLMTEAIGDRFHAILVDNGVLRLNEAANVKKTLVEGLGINLMVVDASEEFLSKLKGVT 298
Query: 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHT 359
DPE KRKIIG FI +F+ A ++ K GK+ +L+QGTLYPDVIES G S T
Sbjct: 299 DPEKKRKIIGNTFIHVFEREAEKIKPKDGKEIQFLLQGTLYPDVIESISFKGP----SQT 354
Query: 360 IKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLG 419
IK+HHNVGGL ++MKLKLIEPL+ LFKDEVR LG +L +P + RHPFPGPG+A+RVLG
Sbjct: 355 IKTHHNVGGLLENMKLKLIEPLRELFKDEVRHLGELLGIPHDLVWRHPFPGPGIAIRVLG 414
Query: 420 DVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALR 479
+VT+ ++I R+ D I+I+ IK+AGLY+ I QAFA LPV+SVGV GDQRT+ V+ALR
Sbjct: 415 EVTK-EQVEIARKADNIYIEEIKKAGLYNQISQAFACLLPVKSVGVMGDQRTYDQVIALR 473
Query: 480 AVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
A+ + D MTADW+ FEH FL VA +I N V GV RV DITSKPP+T+EWE
Sbjct: 474 AIETTDFMTADWFPFEHSFLKKVASRIVNEVDGVARVTYDITSKPPATVEWE 525
|
|
| POMBASE|SPAP7G5.02c gua2 "GMP synthase [glutamine-hydrolyzing] Gua2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
Identities = 255/532 (47%), Positives = 339/532 (63%)
Query: 6 ELVLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPD 65
+ +LILD+GSQY+H + + K P VILSGGP+SV+
Sbjct: 19 DTILILDFGSQYSHLIARRLREIHVYAELLPCTQKIEALPFK-PIGVILSGGPYSVYDDI 77
Query: 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDG-VVKVGEKQEYGRMEILVERS--SG 122
AP E GV VLGICYG+Q + L+G V+ G ++EYG + +E +
Sbjct: 78 APHVDPAVFEL----GVPVLGICYGMQ-EIAWLNGRCVEPGIEREYGPATVSMEPEIKTE 132
Query: 123 IFGN--KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEV 180
+F + + VWMSHGD LP+G+E + R++ A + + K + GLQ+HPEV
Sbjct: 133 VFKSFFNSMPKEFEVWMSHGDRLSALPNGYETIGRTKNSPFAVIAHVTKPIIGLQFHPEV 192
Query: 181 THSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVA 240
TH+P G++ ++ F ++C W +EN +D+E+ I+ +G DHVI A+SGGVDSTVA
Sbjct: 193 THTPLGLQLIKNFAIEICHAKPNWSMENFVDKEILRIRKMIGPSDHVIGAVSGGVDSTVA 252
Query: 241 ATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300
+ ++ +AIGDR H + VDNGLLR E E V +T K L + +T VDA+++F+ KLKGV D
Sbjct: 253 SKVLKEAIGDRFHAIMVDNGLLRLNEAEIVRETLNKHLGIQLTVVDASEEFIGKLKGVTD 312
Query: 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360
PE KRKIIG FI +F+ A + ++ K YL+QGTLYPDVIES G S TI
Sbjct: 313 PEKKRKIIGNTFIHVFEREAERIVKETNGKVEYLLQGTLYPDVIESISFKGP----SQTI 368
Query: 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD 420
K+HHNVGGL KDMKLKLIEPL+ LFKDEVR LG +L + + RHPFPGPGL +R+LG+
Sbjct: 369 KTHHNVGGLLKDMKLKLIEPLRELFKDEVRALGELLGIEHSLVWRHPFPGPGLGIRILGE 428
Query: 421 VTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRA 480
V L+I R+ D IFI I+ G YD I QAFA LPV++VGV GD+RTH V+ALRA
Sbjct: 429 VNAAQ-LEIARKADHIFITEIRNHGYYDKISQAFAALLPVKAVGVMGDKRTHEQVIALRA 487
Query: 481 VTSQDGMTADWYY-FEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
+T+ D MTADWY F KFL V+ +ICN V GVNRV+ DI+SKPP+T+E E
Sbjct: 488 ITTSDFMTADWYDGFSIKFLKLVSSRICNEVSGVNRVLYDISSKPPATVEME 539
|
|
| TIGR_CMR|ECH_0123 ECH_0123 "GMP synthase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
Identities = 259/536 (48%), Positives = 344/536 (64%)
Query: 8 VLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHS-PDA 66
V I+D+GSQ+T D I K+ + ILSGGP SV
Sbjct: 4 VAIIDFGSQFTQLLARRIRELNVYSEIFPHDIAFDYI--KDSKAFILSGGPKSVLDFTGM 61
Query: 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEI-LVERSSGIFG 125
P +E V VLG+CYGLQL+ + + G QE+G+ + +V++S I
Sbjct: 62 PPIVHDIIELNKKTSVPVLGVCYGLQLLSNYFNSTIVHGCGQEFGKAILNVVKKSEMIKD 121
Query: 126 NKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQ-QGAVAAVENREKRLFGLQYHPEVTHSP 184
KVG VWMSH D P GFEV+A S A+A + N E+R++G+Q+HPEV H+P
Sbjct: 122 VWKVGDQPYVWMSHADSVYDTPCGFEVIACSVVNNAIAMISNEERRIYGVQFHPEVYHTP 181
Query: 185 EGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLV 244
+G++ L F+ + G + W +E+ LDE+ IK VG + VI ALSGGVDS+VAA L
Sbjct: 182 DGVKLLANFV-RIAGCDNNWTVESFLDEQENLIKKQVG-DKKVIAALSGGVDSSVAAALT 239
Query: 245 HKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETK 304
++AIGD+LHC+F+DNGLLRY E E+V +F +PVT VD + FL KL+ V DPE K
Sbjct: 240 YRAIGDQLHCIFIDNGLLRYNEAEKVRQSFVDQFQMPVTIVDRSSVFLDKLQFVTDPEQK 299
Query: 305 RKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHH 364
RKIIGK FI +F+ A+ K+G +L+QGT+YPDVIES G+ S TIKSHH
Sbjct: 300 RKIIGKTFIEVFEEEAN----KIGNVE-FLMQGTIYPDVIES---GGSVGKESVTIKSHH 351
Query: 365 NVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEG 424
NVGGLP MKL+L+EPLKLLFKDEVR LG+ L + ++ L RHPFPGPGLA+R++G++T+
Sbjct: 352 NVGGLPDIMKLQLVEPLKLLFKDEVRLLGKKLGISDEILMRHPFPGPGLAIRIIGEITQ- 410
Query: 425 NSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQ 484
+++L+ DEI+I IK+ LYD+IWQAFAV LPV++VGV GD RT+ + ALRAVTS
Sbjct: 411 EKVNMLQAADEIYINLIKKYNLYDVIWQAFAVLLPVKTVGVMGDSRTYGYTCALRAVTSS 470
Query: 485 DGMTADWYYFE---------HKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
DGMTA+ + F ++FL DV+ I N V+G+NRVV D TSKPP+TIEWE
Sbjct: 471 DGMTAECFPFGVDLETKIIFYEFLQDVSNTIVNNVQGINRVVYDTTSKPPATIEWE 526
|
|
| TIGR_CMR|DET_0836 DET_0836 "GMP synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
Identities = 252/531 (47%), Positives = 335/531 (63%)
Query: 2 ENKPELVLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSV 61
E+ E ++I D+GSQY+ + I NPR ILSGGP SV
Sbjct: 20 ESLRESIVIFDFGSQYSLLIARRIREMHVYCELVSHDTPWEKIAHLNPRGFILSGGPSSV 79
Query: 62 HSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVE-RS 120
+ AP PA E L VLGICYG+Q + +L GVV+ EK+EYG + +
Sbjct: 80 YEAGAPLAPAYIFESKLP----VLGICYGMQAITHQLGGVVEHSEKREYGHALLHSSVAN 135
Query: 121 SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEV 180
S + + + VWMSHGD +P GF +A ++ VA + N E ++GLQ+HPEV
Sbjct: 136 SDLLSD--MPEPSPVWMSHGDRIEKMPAGFTALAYTENCPVAVMGN-EADIYGLQFHPEV 192
Query: 181 THSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVA 240
HSP G L+ F+F++C +A W + N + E + I++ VG + VICALSGGVDS V
Sbjct: 193 VHSPNGKIILKNFVFNICKCHANWTMGNYIQESIHNIREQVG-DGQVICALSGGVDSAVV 251
Query: 241 ATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300
A+L+HKAIGD+L C++V+NGLLR +E +R + F+ + + + VDA D+FL L GV D
Sbjct: 252 ASLIHKAIGDQLTCIYVNNGLLRREEADRTLHVFKNHMGMKIIYVDAVDRFLDSLSGVTD 311
Query: 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360
PE KRK+IG EFI +F+ D KLGK +L QGTLYPDVIES S I
Sbjct: 312 PEQKRKVIGSEFIKVFE----DEACKLGKID-FLAQGTLYPDVIESVSSVSKA---SAKI 363
Query: 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD 420
KSHHNVGGLP MKLKLIEPL+ LFKDEVR LG+ L +P++ + R PFPGPGLA+R++G+
Sbjct: 364 KSHHNVGGLPAHMKLKLIEPLRYLFKDEVRLLGKELGLPDEMIWRQPFPGPGLAIRIIGE 423
Query: 421 VTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRA 480
VT L+ILR D I + IK+A +Y +WQ+FA+ V+SVGV GD RT+ ++VA+RA
Sbjct: 424 VTR-EKLEILRAADWIVMSEIKKAKMYHQVWQSFAILTDVKSVGVMGDFRTYGYLVAIRA 482
Query: 481 VTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
VTS+D MTADW + L ++ +I N V+ VNRVV DI+SKPPSTIEWE
Sbjct: 483 VTSEDAMTADWAKLPYDLLSVISNRIVNEVKEVNRVVYDISSKPPSTIEWE 533
|
|
| TIGR_CMR|GSU_2194 GSU_2194 "GMP synthase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
Identities = 257/528 (48%), Positives = 341/528 (64%)
Query: 6 ELVLILDYGSQYTHXXXXXXXXXXXXXXXXXXXXXXDDITAKNPRVVILSGGPHSVHSPD 65
E +LILD+GSQYT + I A P+ +ILSGGP SV+
Sbjct: 8 EKILILDFGSQYTQLIARRVREAHVYCELHPFDMGLEAIRAFAPKGIILSGGPKSVYEEG 67
Query: 66 APAFPAGFLEWALSN-GVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSG-I 123
APA +E AL + GV VLGICYG+QLM + G V K+E+G ++L + G +
Sbjct: 68 APA-----VEEALFDLGVPVLGICYGMQLMSRHFGGEVVPAGKREFGHADLLAAGTPGPL 122
Query: 124 FGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183
F V VWMSHGD +P GF+VVA + V A+++ + L+G+Q+HPEV H+
Sbjct: 123 FEGFFVEGKSPVWMSHGDHVSRMPQGFQVVAETANAPVCAIQDTARNLYGVQFHPEVNHT 182
Query: 184 PEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATL 243
P G + F+ +CG W +++++ V I+ VG E VI LSGGVDS+VAA L
Sbjct: 183 PRGEILIDTFVRKICGCTGQWTPGHIIEDAVNRIRAQVGRE-RVILGLSGGVDSSVAAAL 241
Query: 244 VHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPET 303
+H+AIGD+L CVFVDNGLLR E ++VM TF ++L + V VDA +FL+ L DPE
Sbjct: 242 IHRAIGDQLTCVFVDNGLLRLAEGDQVMATFAENLGVKVIRVDAEQRFLTALADEADPEK 301
Query: 304 KRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363
KRKIIG F+ IF+ + +E G +L QGT+YPDVIES TG+ H+ IKSH
Sbjct: 302 KRKIIGNLFVEIFEEESSRIE---GA--TWLAQGTIYPDVIESAGAK-TGKAHN--IKSH 353
Query: 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTE 423
HNVGGLP+ MKLKL+EPL+ LFKDEVR +G L +P Q + RHPFPGPGL VR+LG+V +
Sbjct: 354 HNVGGLPEYMKLKLLEPLRELFKDEVRAIGEELGLPRQMVWRHPFPGPGLGVRILGEVKK 413
Query: 424 GNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTS 483
+ DILR+ D I+I+ + AG YD I QAFAVFLPV+SVGV GD RT+ +V+ALRAV +
Sbjct: 414 EYA-DILRRADAIYIEELYAAGHYDKISQAFAVFLPVKSVGVMGDGRTYEYVIALRAVET 472
Query: 484 QDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
+D MTA WY ++ + ++ +I N V+GVNRVV DI+SKPP+TIEWE
Sbjct: 473 KDFMTAGWYPLPYEDMARISGRIINEVKGVNRVVYDISSKPPATIEWE 520
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6BLS3 | GUAA_DEBHA | 6, ., 3, ., 5, ., 2 | 0.5199 | 0.9661 | 0.9697 | yes | no |
| Q0IE37 | GUAA_SYNS3 | 6, ., 3, ., 5, ., 2 | 0.5 | 0.9717 | 0.9772 | yes | no |
| A5I720 | GUAA_CLOBH | 6, ., 3, ., 5, ., 2 | 0.4980 | 0.9548 | 0.9941 | yes | no |
| Q3SQP4 | GUAA_NITWN | 6, ., 3, ., 5, ., 2 | 0.5142 | 0.9604 | 0.9532 | yes | no |
| B1L1J7 | GUAA_CLOBM | 6, ., 3, ., 5, ., 2 | 0.4961 | 0.9548 | 0.9941 | yes | no |
| Q9JXR2 | GUAA_NEIMB | 6, ., 3, ., 5, ., 2 | 0.5028 | 0.9585 | 0.9769 | yes | no |
| B3EEV3 | GUAA_CHLL2 | 6, ., 3, ., 5, ., 2 | 0.5281 | 0.9453 | 0.9785 | yes | no |
| A1BD85 | GUAA_CHLPD | 6, ., 3, ., 5, ., 2 | 0.5338 | 0.9453 | 0.9785 | yes | no |
| A4SGJ0 | GUAA_PROVI | 6, ., 3, ., 5, ., 2 | 0.5232 | 0.9359 | 0.9688 | yes | no |
| Q31DE7 | GUAA_PROM9 | 6, ., 3, ., 5, ., 2 | 0.4943 | 0.9623 | 0.9678 | yes | no |
| O66601 | GUAA_AQUAE | 6, ., 3, ., 5, ., 2 | 0.5254 | 0.9604 | 1.0 | yes | no |
| B1XLR5 | GUAA_SYNP2 | 6, ., 3, ., 5, ., 2 | 0.4763 | 0.9661 | 0.95 | yes | no |
| Q5N2F8 | GUAA_SYNP6 | 6, ., 3, ., 5, ., 2 | 0.4858 | 0.9661 | 0.9606 | yes | no |
| A7GIN0 | GUAA_CLOBL | 6, ., 3, ., 5, ., 2 | 0.4961 | 0.9548 | 0.9941 | yes | no |
| A2BNG3 | GUAA_PROMS | 6, ., 3, ., 5, ., 2 | 0.4943 | 0.9623 | 0.9678 | yes | no |
| Q6FUF3 | GUAA_CANGA | 6, ., 3, ., 5, ., 2 | 0.5047 | 0.9661 | 0.9771 | yes | no |
| B7JXM2 | GUAA_CYAP8 | 6, ., 3, ., 5, ., 2 | 0.4820 | 0.9661 | 0.9464 | yes | no |
| B1WY30 | GUAA_CYAA5 | 6, ., 3, ., 5, ., 2 | 0.4801 | 0.9661 | 0.9464 | yes | no |
| Q8CXK8 | GUAA_OCEIH | 6, ., 3, ., 5, ., 2 | 0.5065 | 0.9623 | 1.0 | yes | no |
| Q2S0V0 | GUAA_SALRD | 6, ., 3, ., 5, ., 2 | 0.4886 | 0.9717 | 0.9809 | yes | no |
| Q3B1J3 | GUAA_PELLD | 6, ., 3, ., 5, ., 2 | 0.5187 | 0.9453 | 0.9785 | yes | no |
| C3KUC5 | GUAA_CLOB6 | 6, ., 3, ., 5, ., 2 | 0.4961 | 0.9548 | 0.9941 | yes | no |
| Q5F4X9 | GUAA_NEIG1 | 6, ., 3, ., 5, ., 2 | 0.5047 | 0.9585 | 0.9769 | yes | no |
| Q89N53 | GUAA_BRAJA | 6, ., 3, ., 5, ., 2 | 0.5028 | 0.9604 | 0.9255 | yes | no |
| Q5APF2 | GUAA_CANAL | 6, ., 3, ., 5, ., 2 | 0.5123 | 0.9661 | 0.9679 | N/A | no |
| A7FYP0 | GUAA_CLOB1 | 6, ., 3, ., 5, ., 2 | 0.4980 | 0.9548 | 0.9941 | yes | no |
| Q1QKC3 | GUAA_NITHX | 6, ., 3, ., 5, ., 2 | 0.5228 | 0.9679 | 0.9518 | yes | no |
| Q7NHC2 | GUAA_GLOVI | 6, ., 3, ., 5, ., 2 | 0.4820 | 0.9661 | 0.9310 | yes | no |
| Q2RGP2 | GUAA_MOOTA | 6, ., 3, ., 5, ., 2 | 0.5018 | 0.9623 | 0.9903 | yes | no |
| C1FLV2 | GUAA_CLOBJ | 6, ., 3, ., 5, ., 2 | 0.4961 | 0.9548 | 0.9941 | yes | no |
| Q756B7 | GUAA_ASHGO | 6, ., 3, ., 5, ., 2 | 0.5047 | 0.9661 | 0.9771 | yes | no |
| A4YSU1 | GUAA_BRASO | 6, ., 3, ., 5, ., 2 | 0.5085 | 0.9604 | 0.9532 | yes | no |
| B3ELI1 | GUAA_CHLPB | 6, ., 3, ., 5, ., 2 | 0.5290 | 0.9453 | 0.9766 | yes | no |
| Q6CU71 | GUAA_KLULA | 6, ., 3, ., 5, ., 2 | 0.5112 | 0.9755 | 0.9885 | yes | no |
| B9DYY7 | GUAA_CLOK1 | 6, ., 3, ., 5, ., 2 | 0.4980 | 0.9548 | 0.9941 | yes | no |
| C0QYF1 | GUAA_BRAHW | 6, ., 3, ., 5, ., 2 | 0.4877 | 0.9679 | 1.0 | yes | no |
| Q3AD70 | GUAA_CARHZ | 6, ., 3, ., 5, ., 2 | 0.5114 | 0.9510 | 0.9921 | yes | no |
| B1IFD1 | GUAA_CLOBK | 6, ., 3, ., 5, ., 2 | 0.4961 | 0.9548 | 0.9941 | yes | no |
| Q8KFZ5 | GUAA_CHLTE | 6, ., 3, ., 5, ., 2 | 0.5249 | 0.9529 | 0.9806 | yes | no |
| Q3AT13 | GUAA_CHLCH | 6, ., 3, ., 5, ., 2 | 0.5309 | 0.9397 | 0.9765 | yes | no |
| B0TI09 | GUAA_HELMI | 6, ., 3, ., 5, ., 2 | 0.5009 | 0.9623 | 0.9961 | yes | no |
| B9L0W3 | GUAA_THERP | 6, ., 3, ., 5, ., 2 | 0.5047 | 0.9491 | 0.9563 | yes | no |
| B6JHM4 | GUAA_OLICO | 6, ., 3, ., 5, ., 2 | 0.5161 | 0.9604 | 0.9604 | yes | no |
| A3PA84 | GUAA_PROM0 | 6, ., 3, ., 5, ., 2 | 0.4943 | 0.9623 | 0.9678 | yes | no |
| Q7UA53 | GUAA_SYNPX | 6, ., 3, ., 5, ., 2 | 0.4943 | 0.9623 | 0.9678 | yes | no |
| B4SFX7 | GUAA_PELPB | 6, ., 3, ., 5, ., 2 | 0.5261 | 0.9378 | 0.9707 | yes | no |
| A0Q2S8 | GUAA_CLONN | 6, ., 3, ., 5, ., 2 | 0.5 | 0.9548 | 0.9902 | yes | no |
| A5N5D9 | GUAA_CLOK5 | 6, ., 3, ., 5, ., 2 | 0.4980 | 0.9548 | 0.9941 | yes | no |
| B7K8T7 | GUAA_CYAP7 | 6, ., 3, ., 5, ., 2 | 0.4820 | 0.9661 | 0.9464 | yes | no |
| B4RJH7 | GUAA_NEIG2 | 6, ., 3, ., 5, ., 2 | 0.5047 | 0.9585 | 0.9769 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.5 | 0.963 |
| 3rd Layer | 6.3.5.2 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 531 | |||
| PLN02347 | 536 | PLN02347, PLN02347, GMP synthetase | 0.0 | |
| PRK00074 | 511 | PRK00074, guaA, GMP synthase; Reviewed | 0.0 | |
| cd01997 | 295 | cd01997, GMP_synthase_C, The C-terminal domain of | 0.0 | |
| COG0519 | 315 | COG0519, GuaA, GMP synthase, PP-ATPase domain/subu | 0.0 | |
| TIGR00884 | 311 | TIGR00884, guaA_Cterm, GMP synthase (glutamine-hyd | 1e-167 | |
| PRK00919 | 307 | PRK00919, PRK00919, GMP synthase subunit B; Valida | 1e-127 | |
| cd01742 | 181 | cd01742, GATase1_GMP_Synthase, Type 1 glutamine am | 7e-83 | |
| TIGR00888 | 188 | TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd | 4e-67 | |
| pfam00958 | 93 | pfam00958, GMP_synt_C, GMP synthase C terminal dom | 2e-55 | |
| COG0518 | 198 | COG0518, GuaA, GMP synthase - Glutamine amidotrans | 2e-48 | |
| PRK00758 | 184 | PRK00758, PRK00758, GMP synthase subunit A; Valida | 4e-39 | |
| pfam00117 | 186 | pfam00117, GATase, Glutamine amidotransferase clas | 2e-33 | |
| cd01741 | 188 | cd01741, GATase1_1, Subgroup of proteins having th | 1e-19 | |
| COG0512 | 191 | COG0512, PabA, Anthranilate/para-aminobenzoate syn | 4e-13 | |
| PRK14607 | 534 | PRK14607, PRK14607, bifunctional glutamine amidotr | 7e-13 | |
| cd01743 | 184 | cd01743, GATase1_Anthranilate_Synthase, Type 1 glu | 8e-13 | |
| PRK05670 | 189 | PRK05670, PRK05670, anthranilate synthase componen | 6e-12 | |
| PRK08007 | 187 | PRK08007, PRK08007, para-aminobenzoate synthase co | 9e-11 | |
| COG2071 | 243 | COG2071, COG2071, Predicted glutamine amidotransfe | 8e-10 | |
| CHL00101 | 190 | CHL00101, trpG, anthranilate synthase component 2 | 1e-09 | |
| PRK13566 | 720 | PRK13566, PRK13566, anthranilate synthase; Provisi | 3e-09 | |
| pfam07722 | 219 | pfam07722, Peptidase_C26, Peptidase C26 | 6e-09 | |
| cd01745 | 189 | cd01745, GATase1_2, Subgroup of proteins having th | 1e-08 | |
| TIGR00566 | 188 | TIGR00566, trpG_papA, glutamine amidotransferase o | 6e-08 | |
| PRK07649 | 195 | PRK07649, PRK07649, para-aminobenzoate/anthranilat | 8e-08 | |
| TIGR01815 | 717 | TIGR01815, TrpE-clade3, anthranilate synthase, alp | 2e-07 | |
| PRK06774 | 191 | PRK06774, PRK06774, para-aminobenzoate synthase co | 5e-07 | |
| cd01653 | 115 | cd01653, GATase1, Type 1 glutamine amidotransferas | 5e-07 | |
| PRK09065 | 237 | PRK09065, PRK09065, glutamine amidotransferase; Pr | 1e-06 | |
| pfam02540 | 242 | pfam02540, NAD_synthase, NAD synthase | 1e-06 | |
| cd03128 | 92 | cd03128, GAT_1, Type 1 glutamine amidotransferase | 1e-06 | |
| CHL00197 | 382 | CHL00197, carA, carbamoyl-phosphate synthase argin | 1e-06 | |
| cd01744 | 178 | cd01744, GATase1_CPSase, Small chain of the glutam | 5e-06 | |
| TIGR01368 | 358 | TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synt | 4e-05 | |
| PLN02335 | 222 | PLN02335, PLN02335, anthranilate synthase | 5e-05 | |
| COG0037 | 298 | COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [C | 6e-05 | |
| PRK06490 | 239 | PRK06490, PRK06490, glutamine amidotransferase; Pr | 7e-05 | |
| COG0171 | 268 | COG0171, NadE, NAD synthase [Coenzyme metabolism] | 8e-05 | |
| TIGR00552 | 250 | TIGR00552, nadE, NAD+ synthetase | 1e-04 | |
| cd01990 | 202 | cd01990, Alpha_ANH_like_I, This is a subfamily of | 2e-04 | |
| cd00553 | 248 | cd00553, NAD_synthase, NAD+ synthase is a homodime | 2e-04 | |
| cd01986 | 103 | cd01986, Alpha_ANH_like, Adenine nucleotide alpha | 4e-04 | |
| PRK08857 | 193 | PRK08857, PRK08857, para-aminobenzoate synthase co | 4e-04 | |
| cd00553 | 248 | cd00553, NAD_synthase, NAD+ synthase is a homodime | 5e-04 | |
| PRK07765 | 214 | PRK07765, PRK07765, para-aminobenzoate synthase co | 6e-04 | |
| PRK09522 | 531 | PRK09522, PRK09522, bifunctional glutamine amidotr | 6e-04 | |
| PRK05637 | 208 | PRK05637, PRK05637, anthranilate synthase componen | 7e-04 | |
| cd01998 | 349 | cd01998, tRNA_Me_trans, tRNA methyl transferase | 0.001 | |
| pfam00733 | 195 | pfam00733, Asn_synthase, Asparagine synthase | 0.001 | |
| COG1606 | 269 | COG1606, COG1606, ATP-utilizing enzymes of the PP- | 0.001 | |
| pfam03054 | 355 | pfam03054, tRNA_Me_trans, tRNA methyl transferase | 0.002 | |
| TIGR01855 | 196 | TIGR01855, IMP_synth_hisH, imidazole glycerol phos | 0.003 |
| >gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase | Back alignment and domain information |
|---|
Score = 1076 bits (2785), Expect = 0.0
Identities = 426/531 (80%), Positives = 474/531 (89%)
Query: 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS 60
++ ++VLILDYGSQYTHLITRR+R L + SL LSGT SLD I + NPRVVILSGGPHS
Sbjct: 6 AKSYLDVVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHS 65
Query: 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS 120
VH AP P GF ++ GV VLGICYG+QL+VQKL G VK GEKQEYGRMEI V
Sbjct: 66 VHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYGRMEIRVVCG 125
Query: 121 SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEV 180
S +FG+ G Q VWMSHGDEAV LP+GFEVVA+S QGAV A+ENRE+R++GLQYHPEV
Sbjct: 126 SQLFGDLPSGETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRERRIYGLQYHPEV 185
Query: 181 THSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVA 240
THSP+GMETLR+FLFDVCGV A WK+++VL+E+++ IK TVG ++HVICALSGGVDSTVA
Sbjct: 186 THSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKATVGPDEHVICALSGGVDSTVA 245
Query: 241 ATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300
ATLVHKAIGDRLHCVFVDNGLLRYKE+ERVM+TF++DLHLPVTCVDA+++FLSKLKGV D
Sbjct: 246 ATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASERFLSKLKGVTD 305
Query: 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360
PE KRKIIG EFI +FD FAH LEQKLGKKPA+LVQGTLYPDVIESCPPPG+GRTHSHTI
Sbjct: 306 PEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTI 365
Query: 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD 420
KSHHNVGGLPKDMKLKLIEPLKLLFKDEVR+LGR+L VPE FLKRHPFPGPGLAVRVLGD
Sbjct: 366 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRHPFPGPGLAVRVLGD 425
Query: 421 VTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRA 480
VTEGN+LDILRQVDEIFI SIK+AGLYD IWQAFAVFLPV+SVGVQGDQRTHSHVVALRA
Sbjct: 426 VTEGNALDILRQVDEIFINSIKDAGLYDEIWQAFAVFLPVKSVGVQGDQRTHSHVVALRA 485
Query: 481 VTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
VTS+DGMTADWY+FEHKFLDDV+RKICN VRGVNRVV DITSKPPSTIEWE
Sbjct: 486 VTSEDGMTADWYHFEHKFLDDVSRKICNEVRGVNRVVYDITSKPPSTIEWE 536
|
Length = 536 |
| >gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed | Back alignment and domain information |
|---|
Score = 840 bits (2174), Expect = 0.0
Identities = 289/529 (54%), Positives = 375/529 (70%), Gaps = 18/529 (3%)
Query: 3 NKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVH 62
+ +LILD+GSQYT LI RR+R L + S + S ++I A NP+ +ILSGGP SV+
Sbjct: 1 IHHDKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVY 60
Query: 63 SPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSG 122
AP E GV VLGICYG+QLM +L G V+ K+EYGR E+ V+ S
Sbjct: 61 EEGAPRADPEIFEL----GVPVLGICYGMQLMAHQLGGKVERAGKREYGRAELEVDNDSP 116
Query: 123 IFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTH 182
+F + Q VWMSHGD+ LP+GF+V+A ++ +AA+ N E++ +G+Q+HPEVTH
Sbjct: 117 LFKG--LPEEQDVWMSHGDKVTELPEGFKVIASTENCPIAAIANEERKFYGVQFHPEVTH 174
Query: 183 SPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAAT 242
+P+G + L F+FD+CG W +EN ++E ++ I++ VG + VI LSGGVDS+VAA
Sbjct: 175 TPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIREQVG-DKKVILGLSGGVDSSVAAV 233
Query: 243 LVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPE 302
L+HKAIGD+L CVFVD+GLLR E E+VM+ F + L + VDA+D+FLS L GV DPE
Sbjct: 234 LLHKAIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRFLSALAGVTDPE 293
Query: 303 TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKS 362
KRKIIG+EFI +F+ A L +L QGTLYPDVIES G + TIKS
Sbjct: 294 EKRKIIGREFIEVFEEEAKKL-----GGVKFLAQGTLYPDVIES-----GGTKKAATIKS 343
Query: 363 HHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVT 422
HHNVGGLP+DMKLKL+EPL+ LFKDEVR+LG L +PE+ + RHPFPGPGLA+R+LG+VT
Sbjct: 344 HHNVGGLPEDMKLKLVEPLRELFKDEVRKLGLELGLPEEIVYRHPFPGPGLAIRILGEVT 403
Query: 423 EGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVT 482
+ LDILR+ D IFI+ +++AGLYD IWQAFAV LPV+SVGV GD RT+ +VVALRAVT
Sbjct: 404 K-EKLDILREADAIFIEELRKAGLYDKIWQAFAVLLPVKSVGVMGDGRTYDYVVALRAVT 462
Query: 483 SQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
S DGMTADW + FL+ ++ +I N V+GVNRVV DITSKPP+TIEWE
Sbjct: 463 SIDGMTADWARLPYDFLEKISNRIINEVKGVNRVVYDITSKPPATIEWE 511
|
Length = 511 |
| >gnl|CDD|238955 cd01997, GMP_synthase_C, The C-terminal domain of GMP synthetase | Back alignment and domain information |
|---|
Score = 528 bits (1362), Expect = 0.0
Identities = 194/305 (63%), Positives = 232/305 (76%), Gaps = 10/305 (3%)
Query: 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCV 285
VI ALSGGVDSTVAA L+HKAIGDRL CVFVDNGLLR E ERV + F K L + + V
Sbjct: 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVV 60
Query: 286 DATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIE 345
DA+++FLS LKGV DPE KRKIIG+ FI +F+ A L YL QGTLYPDVIE
Sbjct: 61 DASERFLSALKGVTDPEEKRKIIGETFIEVFEEEAKKLG-----LAEYLAQGTLYPDVIE 115
Query: 346 SCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKR 405
S G+ + TIKSHHNVGGLP+DMKLKLIEPL+ LFKDEVR+LGR L +PE+ ++R
Sbjct: 116 SGSGKGS----ADTIKSHHNVGGLPEDMKLKLIEPLRDLFKDEVRELGRELGLPEEIVER 171
Query: 406 HPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGV 465
HPFPGPGLAVR+LG+VTE L+ILR+ D I + +++AGLYD IWQAFAV LP++SVGV
Sbjct: 172 HPFPGPGLAVRILGEVTE-EKLEILREADAIVEEELEKAGLYDKIWQAFAVLLPIKSVGV 230
Query: 466 QGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPP 525
GDQRT+ +VVALRAV S D MTADW ++ L+ ++ +I N V GVNRVV DITSKPP
Sbjct: 231 MGDQRTYGYVVALRAVESSDFMTADWARLPYEVLEKISNRITNEVPGVNRVVYDITSKPP 290
Query: 526 STIEW 530
+TIEW
Sbjct: 291 ATIEW 295
|
It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes. Length = 295 |
| >gnl|CDD|223593 COG0519, GuaA, GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 517 bits (1335), Expect = 0.0
Identities = 196/328 (59%), Positives = 245/328 (74%), Gaps = 14/328 (4%)
Query: 204 WKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR 263
W +EN ++E ++ I++ VG + VI ALSGGVDS+VAA L H+AIGD+L CVFVD+GLLR
Sbjct: 2 WTMENFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLR 60
Query: 264 YKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDL 323
E E+V++ F + L L + VDA D+FLS LKGV DPE KRKIIG+EFI +F+ A L
Sbjct: 61 KGEAEQVVEMFREHLGLNLIVVDAKDRFLSALKGVTDPEEKRKIIGREFIEVFEEEAKKL 120
Query: 324 EQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKL 383
+ +L QGT+YPDVIES G + TIKSHHNVGGLP+DMKLKL+EPL+
Sbjct: 121 GAE------FLAQGTIYPDVIES------GTGKAGTIKSHHNVGGLPEDMKLKLVEPLRE 168
Query: 384 LFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKE 443
LFKDEVR+LGR L +PE+ + RHPFPGPGLAVR+LG+VT L+ILR+ D I + +++
Sbjct: 169 LFKDEVRELGRELGLPEEIVYRHPFPGPGLAVRILGEVTR-EKLEILREADAIVEEELRK 227
Query: 444 AGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVA 503
AGLYD IWQAFAV LPV+SVGV GD RT+ +VVALRAV S DGMTADW + L+ ++
Sbjct: 228 AGLYDKIWQAFAVLLPVKSVGVMGDGRTYGYVVALRAVESIDGMTADWARLPYDVLEKIS 287
Query: 504 RKICNTVRGVNRVVQDITSKPPSTIEWE 531
+I N V GVNRVV DITSKPP+TIEWE
Sbjct: 288 NRITNEVPGVNRVVYDITSKPPATIEWE 315
|
Length = 315 |
| >gnl|CDD|233169 TIGR00884, guaA_Cterm, GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit | Back alignment and domain information |
|---|
Score = 476 bits (1227), Expect = e-167
Identities = 197/325 (60%), Positives = 243/325 (74%), Gaps = 15/325 (4%)
Query: 208 NVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKER 267
N ++E V+ I++ VG + VI ALSGGVDS+VAA L H+AIGDRL CVFVD+GLLR E
Sbjct: 1 NFIEEAVEEIREQVG-DAKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEA 59
Query: 268 ERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKL 327
E+V+ TF L L + VDA ++FLS LKGV DPE KRKIIG+ FI +F+ A +
Sbjct: 60 EQVVKTFGDRLGLNLVYVDAKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKI---- 115
Query: 328 GKKPA-YLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFK 386
A YL QGT+YPDVIES G +H IKSHHNVGGLP+DMKLKL+EPL+ LFK
Sbjct: 116 --GDAEYLAQGTIYPDVIES----AAGT--AHVIKSHHNVGGLPEDMKLKLVEPLRELFK 167
Query: 387 DEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGL 446
DEVR+LG+ L +PE+ + RHPFPGPGLAVRVLG+VT+ L+ILR+ D I I+ +K+AGL
Sbjct: 168 DEVRKLGKELGLPEEIVWRHPFPGPGLAVRVLGEVTK-EKLEILRRADAIVIEELKKAGL 226
Query: 447 YDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKI 506
YD +WQAFAV LPV+SVGV GD RT+ +V+ALRAV S DGMTADW + FL+ ++ +I
Sbjct: 227 YDKVWQAFAVLLPVKSVGVMGDGRTYGYVIALRAVESIDGMTADWARLPYDFLERISNRI 286
Query: 507 CNTVRGVNRVVQDITSKPPSTIEWE 531
N V GVNRVV DITSKPP+TIEWE
Sbjct: 287 TNEVPGVNRVVYDITSKPPATIEWE 311
|
This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 311 |
| >gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated | Back alignment and domain information |
|---|
Score = 373 bits (961), Expect = e-127
Identities = 158/325 (48%), Positives = 217/325 (66%), Gaps = 22/325 (6%)
Query: 207 ENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKE 266
E ++E ++ I++ +G + I ALSGGVDS+VAA L H+AIGDRL VFVD GL+R E
Sbjct: 5 EKFIEEAIEEIREEIG-DGKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGE 63
Query: 267 RERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQK 326
ER+ +TF L+L + VDA D+FL LKGV DPE KRKIIG+ FI +F+ A ++ +
Sbjct: 64 TERIKETFSDMLNLRI--VDAKDRFLDALKGVTDPEEKRKIIGETFIRVFEEVAKEIGAE 121
Query: 327 LGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFK 386
YLVQGT+ PD IES IKSHHNVGGLP+ M LK++EPL+ L+K
Sbjct: 122 ------YLVQGTIAPDWIES----------EGGIKSHHNVGGLPEGMVLKIVEPLRDLYK 165
Query: 387 DEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGL 446
DEVR++ R L +PE+ +R PFPGPGLAVR++G+VTE L+I+R+ + I + +++ G
Sbjct: 166 DEVREVARALGLPEEISERMPFPGPGLAVRIIGEVTE-EKLEIVREANAIVEEEVEKYGP 224
Query: 447 YDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKI 506
WQ FA L V++ GV+GD R + +VA+RAV S+DGMTAD + L ++ +I
Sbjct: 225 DK--WQYFAALLGVKATGVKGDNRVYGWIVAVRAVESRDGMTADAPELPWEVLQRISSRI 282
Query: 507 CNTVRGVNRVVQDITSKPPSTIEWE 531
+ + V RVV DIT KPP+TIE+E
Sbjct: 283 TSEIPEVARVVYDITPKPPATIEFE 307
|
Length = 307 |
| >gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 7e-83
Identities = 96/187 (51%), Positives = 128/187 (68%), Gaps = 6/187 (3%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
+LILD+GSQYTHLI RR+R L + S L T L++I KNP+ +ILSGGP SV+ DAP
Sbjct: 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEEDAP 60
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNK 127
E GV VLGICYG+QL+ + L G V+ G+K+EYG+ EI ++ SS +F
Sbjct: 61 RVDPEIFEL----GVPVLGICYGMQLIAKALGGKVERGDKREYGKAEIEIDDSSPLFEG- 115
Query: 128 KVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGM 187
+ Q VWMSHGDE V LP+GF+V+A S VAA+ N EK+++G+Q+HPEVTH+ +G
Sbjct: 116 -LPDEQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANEEKKIYGVQFHPEVTHTEKGK 174
Query: 188 ETLRYFL 194
E L+ FL
Sbjct: 175 EILKNFL 181
|
Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 181 |
| >gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 4e-67
Identities = 89/192 (46%), Positives = 124/192 (64%), Gaps = 6/192 (3%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
+L+LD+GSQYT LI RR+R L + S + T L++I KNP+ +ILSGGP SV++ +AP
Sbjct: 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAENAP 60
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNK 127
E GV VLGICYG+QLM ++L G V EK+EYG+ E+ + +F
Sbjct: 61 RADEKIFEL----GVPVLGICYGMQLMAKQLGGEVGRAEKREYGKAELEILDEDDLFRG- 115
Query: 128 KVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGM 187
+ VWMSHGD+ LP+GF+V+A S VAA+ + EK ++G+Q+HPEVTH+ G
Sbjct: 116 -LPDESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHEEKPIYGVQFHPEVTHTEYGN 174
Query: 188 ETLRYFLFDVCG 199
E L F++DVCG
Sbjct: 175 ELLENFVYDVCG 186
|
This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188 |
| >gnl|CDD|201527 pfam00958, GMP_synt_C, GMP synthase C terminal domain | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 2e-55
Identities = 59/93 (63%), Positives = 73/93 (78%)
Query: 438 IQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHK 497
I+ +++AGLYD IWQAFAV LPV+SVGV GD RT+ +VVALRAV S D MTADW ++
Sbjct: 1 IEELRKAGLYDKIWQAFAVLLPVKSVGVMGDGRTYGYVVALRAVESTDFMTADWARLPYE 60
Query: 498 FLDDVARKICNTVRGVNRVVQDITSKPPSTIEW 530
L+ ++ +I N V GVNRVV DITSKPP+TIEW
Sbjct: 61 VLEKISNRITNEVPGVNRVVYDITSKPPATIEW 93
|
GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. This family is the C-terminal domain specific to the GMP synthases EC:6.3.5.2. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains. Length = 93 |
| >gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 2e-48
Identities = 70/197 (35%), Positives = 99/197 (50%), Gaps = 4/197 (2%)
Query: 5 PELVLILDYGSQYTHLITRRIRSLS-ILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHS 63
+LILD+G QY LI RR+R L + S + T +++ +P +I+SGGP SV+
Sbjct: 1 MRKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYD 60
Query: 64 PDAPAFPAG-FLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSG 122
D ++ A G VLGIC G QL+ + L G V+ G K+E G + +
Sbjct: 61 EDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPKREIGWTPVELTEGDD 120
Query: 123 IFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTH 182
V+MSHGD V LP+G V+A S+ A KR +G+Q+HPEVTH
Sbjct: 121 PLFAGLPDLFTTVFMSHGDTVVELPEGAVVLASSETCPNQAFRY-GKRAYGVQFHPEVTH 179
Query: 183 SPEGMETLRYFLFDVCG 199
G L F ++CG
Sbjct: 180 -EYGEALLENFAHEICG 195
|
Length = 198 |
| >gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 4e-39
Identities = 71/193 (36%), Positives = 106/193 (54%), Gaps = 13/193 (6%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
++++D G QY HLI R +R L + + + T +++I A +ILSGGP +
Sbjct: 2 IVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKA-FEDGLILSGGP-DIER---- 55
Query: 68 AFPAGF-LEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGN 126
AG E+ V +LGIC G QL+ + G V GE EY +E+ + I
Sbjct: 56 ---AGNCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGEYGEYALVEVEILDEDDIL-- 110
Query: 127 KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEG 186
K + VW SH DE LPDGFE++ARS V A++++EK ++G+Q+HPEV H+ G
Sbjct: 111 KGLPPEIRVWASHADEVKELPDGFEILARSDICEVEAMKHKEKPIYGVQFHPEVAHTEYG 170
Query: 187 METLRYFLFDVCG 199
E + FL ++CG
Sbjct: 171 EEIFKNFL-EICG 182
|
Length = 184 |
| >gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-33
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 9/192 (4%)
Query: 9 LILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSV-HSPDAP 67
L++D G +T+ + R +R L + + ++I NP +I+S GP S A
Sbjct: 1 LLIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELNPDGIIISPGPGSPGALGGAI 60
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNK 127
++ N + +LGIC G QL+ G V +K+ + V G+F
Sbjct: 61 EA----IKELRENKIPILGICLGHQLLALAFGGKVIKAKKEPHHGKNSPVGHDKGLFYGL 116
Query: 128 KVGHHQVVWMSHGDEAVV--LPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPE 185
V H LPDG EV A S+ G + A+ ++E +FG+Q+HPE + +P
Sbjct: 117 PNVFI--VRRYHSYAVDPDTLPDGLEVTAASENGGIMAIRHKENPIFGVQFHPESSLTPG 174
Query: 186 GMETLRYFLFDV 197
G E L F +
Sbjct: 175 GPELLFNFFIKL 186
|
Length = 186 |
| >gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-19
Identities = 46/144 (31%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 40 SLDDITAKNPRVVILSGGPHSVHSPDAPAFPA--GFLEWALSNGVYVLGICYGLQLMVQK 97
LDD +++ GGP SV D P + AL+ G VLGIC G QL+ +
Sbjct: 43 DLDDYDG-----LVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA 97
Query: 98 LDG-VVKVGEKQEYGRMEI-LVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVAR 155
L G V + + E G + L E + V+ HGD V LP G ++A
Sbjct: 98 LGGKVGRNPKGWEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHGDTVVELPPGAVLLAS 157
Query: 156 SQQGAVAAVENREKRLFGLQYHPE 179
S+ A R GLQ+HPE
Sbjct: 158 SEACPNQAFR-YGDRALGLQFHPE 180
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 188 |
| >gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-13
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 26/199 (13%)
Query: 8 VLILD-YGSQYTHLITRRIRSLSI-LSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD 65
+L++D Y S +T+ + + +R L +++ + SL+ I A P +++S GP + P
Sbjct: 4 ILLIDNYDS-FTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGT---PK 59
Query: 66 APAFPAGFLE---WALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSG 122
AG + + +LG+C G Q + + G V ++ +G+ I+ SG
Sbjct: 60 ----DAGISLELIRRFAGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITHDGSG 115
Query: 123 IF---GNK-KVG--HHQVVWMSHGDEAVVLPDGFEVVARSQQGAV-AAVENREKRLFGLQ 175
+F N V H VV D LP+ EV A S+ G V AV +++ ++G+Q
Sbjct: 116 LFAGLPNPFTVTRYHSLVV-----DPET-LPEELEVTAESEDGGVIMAVRHKKLPIYGVQ 169
Query: 176 YHPEVTHSPEGMETLRYFL 194
+HPE + G L FL
Sbjct: 170 FHPESILTEYGHRILENFL 188
|
Length = 191 |
| >gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 7e-13
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 36 SGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGF---LEWALSNGVYVLGICYGLQ 92
+ ++++I A NP +++S GP P+ AG + S V +LG+C G Q
Sbjct: 32 NDEITIEEIEALNPSHIVISPGPGR---PEE----AGISVEVIRHFSGKVPILGVCLGHQ 84
Query: 93 LMVQKLDGVVKVGEKQEYGRMEILVERSSGIFG-----NKKVGHHQVVWMSHGDEAVVLP 147
+ G + ++ +G+ + G+F +H +V +EA LP
Sbjct: 85 AIGYAFGGKIVHAKRILHGKTSPIDHNGKGLFRGIPNPTVATRYHSLV----VEEAS-LP 139
Query: 148 DGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
+ EV A+S G + + ++E +FG+Q+HPE + EG L+ FL
Sbjct: 140 ECLEVTAKSDDGEIMGIRHKEHPIFGVQFHPESILTEEGKRILKNFL 186
|
Length = 534 |
| >gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 8e-13
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 40 SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99
+L+++ NP +++S GP P+ + + AL+ V +LG+C G Q + +
Sbjct: 34 TLEELELLNPDAIVISPGPGH---PEDAG-ISLEIIRALAGKVPILGVCLGHQAIAEAFG 89
Query: 100 GVVKVGEKQEYGR-MEILVERSSGIFGNK---KVG--HHQVVWMSHGDEAVVLPDGFEVV 153
G V + +G+ EI + S G VG H VV + LPD EV
Sbjct: 90 GKVVRAPEPMHGKTSEIHHDGSGLFKGLPQPFTVGRYHSLVV------DPDPLPDLLEVT 143
Query: 154 ARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
A ++ G + A+ +R+ ++G+Q+HPE + G+ L FL
Sbjct: 144 ASTEDGVIMALRHRDLPIYGVQFHPESILTEYGLRLLENFL 184
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184 |
| >gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 6e-12
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 40 SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLE---WALSNGVYVLGICYGLQLMVQ 96
+L++I A NP ++LS GP + P AG + V +LG+C G Q + +
Sbjct: 35 TLEEIEALNPDAIVLSPGPGT---PAE----AGISLELIREFAGKVPILGVCLGHQAIGE 87
Query: 97 KLDGVVKVGEKQEYGRMEILVERSSGIFGNKK----VG--HHQVVWMSHGDEAVVLPDGF 150
G V ++ +G+ + SGIF V H VV + LPD
Sbjct: 88 AFGGKVVRAKEIMHGKTSPIEHDGSGIFAGLPNPFTVTRYHSLVV------DRESLPDCL 141
Query: 151 EVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
EV A + G + V ++E ++G+Q+HPE + G + L FL
Sbjct: 142 EVTAWTDDGEIMGVRHKELPIYGVQFHPESILTEHGHKLLENFL 185
|
Length = 189 |
| >gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 9e-11
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 8/157 (5%)
Query: 40 SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99
+L DI A P+ +++S GP + PD + + + +LG+C G Q M Q
Sbjct: 35 TLADIDALKPQKIVISPGPCT---PDEAGISLDVIR-HYAGRLPILGVCLGHQAMAQAFG 90
Query: 100 GVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHG--DEAVVLPDGFEVVARSQ 157
G V K +G+ + G+F + + + V H E LP FEV A S+
Sbjct: 91 GKVVRAAKVMHGKTSPITHNGEGVF--RGLANPLTVTRYHSLVVEPDSLPACFEVTAWSE 148
Query: 158 QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
+ + +R+ L G+Q+HPE S +G + L FL
Sbjct: 149 TREIMGIRHRQWDLEGVQFHPESILSEQGHQLLANFL 185
|
Length = 187 |
| >gnl|CDD|224982 COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 8e-10
Identities = 43/163 (26%), Positives = 60/163 (36%), Gaps = 43/163 (26%)
Query: 52 VILSGG----PH----SVHSPDAPAFPA------GFLEWALSNGVYVLGICYGLQLM--- 94
+IL+GG P D P P + AL G+ +LGIC GLQL+
Sbjct: 64 LILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVA 123
Query: 95 -----VQKLDGVVKV-----GEKQEYGRMEILVERSS---GIFGNKKVG----HHQVVWM 137
Q + E+ +E S I G + HHQ +
Sbjct: 124 LGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGESEFMVNSFHHQAI-- 181
Query: 138 SHGDEAVVLPDGFEVVARSQQGAVAAVENR-EKRLFGLQYHPE 179
L G V AR+ G V AVE + + + G+Q+HPE
Sbjct: 182 ------KKLAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPE 218
|
Length = 243 |
| >gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2 | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-09
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 6/190 (3%)
Query: 7 LVLILDYGSQYTHLITRRIRSLSI-LSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD 65
++LI+D +T+ + + + L+ + +C + L I N R +I+S GP P
Sbjct: 1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGH---PR 57
Query: 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFG 125
+ + + + +LG+C G Q + G + K +G+ + +F
Sbjct: 58 DSGISLDVIS-SYAPYIPILGVCLGHQSIGYLFGGKIIKAPKPMHGKTSKIYHNHDDLFQ 116
Query: 126 NKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENRE-KRLFGLQYHPEVTHSP 184
+ S + + LP E+ A ++ G + A +++ K L G+Q+HPE +
Sbjct: 117 GLPNPFTATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKKYKMLRGIQFHPESLLTT 176
Query: 185 EGMETLRYFL 194
G + LR FL
Sbjct: 177 HGQQILRNFL 186
|
Length = 190 |
| >gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 37/149 (24%)
Query: 48 NPRVVILSGGPHSVHSPDAPAFPAGF-----LEWALSNGVYVLGICYGLQLMVQKLDGVV 102
NP +V+LS GP P+ F ++ AL+ + + G+C GLQ +V+ G +
Sbjct: 569 NPDLVVLSPGPGR---------PSDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGEL 619
Query: 103 KVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV------------LPDGF 150
+G+ S I +V ++ +E V LPD
Sbjct: 620 GQLAYPMHGK-------PSRI----RVRGPGRLFSGLPEEFTVGRYHSLFADPETLPDEL 668
Query: 151 EVVARSQQGAVAAVENREKRLFGLQYHPE 179
V A ++ G + A+E++ + +Q+HPE
Sbjct: 669 LVTAETEDGVIMAIEHKTLPVAAVQFHPE 697
|
Length = 720 |
| >gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26 | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 6e-09
Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 48/167 (28%)
Query: 52 VILSGGPHSVH---------SPDAPAFPAG------FLEWALSNGVYVLGICYGLQLM-- 94
++L+GG +V PA + AL G +LGIC G+QL+
Sbjct: 62 LLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAALERGKPILGICRGMQLLNV 121
Query: 95 ------VQKLDGVV------KVGEKQEYGRMEILVERSS---GIFGNKKVG----HHQVV 135
Q + Q + +E S + G +++ HHQ
Sbjct: 122 ALGGTLYQDIPEHPGNSDHHHQLAVQYAPSHAVSLEPGSLLARLLGAEEILVNSLHHQ-- 179
Query: 136 WMSHGDEAV-VLPDGFEVVARSQQGAVAAVE--NREKRLFGLQYHPE 179
A+ L G V A + G + A+E N + G+Q+HPE
Sbjct: 180 -------AIKRLAPGLRVEATAPDGTIEAIESPNAPYFVLGVQWHPE 219
|
These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus. Length = 219 |
| >gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 43/157 (27%)
Query: 52 VILSGGPHSV--------HSPDAPAFPA--GF----LEWALSNGVYVLGICYGLQLMVQK 97
++L+GG H P P F L AL G +LGIC G+QL+
Sbjct: 57 LLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLN-- 114
Query: 98 LDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQ 157
V +G G + + +S HHQ + L DG V AR+
Sbjct: 115 ----VALG-----GTLYQDIRVNSL--------HHQAI-----KR---LADGLRVEARAP 149
Query: 158 QGAVAAVENREKR-LFGLQYHPEVTHSPEGMETLRYF 193
G + A+E+ ++ + G+Q+HPE + ++L+ F
Sbjct: 150 DGVIEAIESPDRPFVLGVQWHPE-WLADTDPDSLKLF 185
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 189 |
| >gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-08
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 17/162 (10%)
Query: 40 SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99
+L +I A P ++++S GP + P+ + + + +LG+C G Q M Q
Sbjct: 35 TLQEIEALLPLLIVISPGPCT---PNEAGISLEAIR-HFAGKLPILGVCLGHQAMGQAFG 90
Query: 100 GVVKVGEKQEYGR---MEIL-VERSSGIFGNKKVG--HHQVVWMSHGDEAVVLPDGFEVV 153
G V +G+ +E G+F H VV E LP F V
Sbjct: 91 GDVVRANTVMHGKTSEIEHNGAGIFRGLFNPLTATRYHSLVV------EPETLPTCFPVT 144
Query: 154 ARSQQ-GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
A ++ + A+ +R+ L G+Q+HPE S +G + L FL
Sbjct: 145 AWEEENIEIMAIRHRDLPLEGVQFHPESILSEQGHQLLANFL 186
|
This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the PFAM model GATase. Length = 188 |
| >gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 8e-08
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 40 SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99
++ DI P +++S GP S P+ + + + + G+C G Q + Q
Sbjct: 35 TISDIENMKPDFLMISPGPCS---PNEAGISMEVIR-YFAGKIPIFGVCLGHQSIAQVFG 90
Query: 100 GVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHG--DEAVVLPDGFEVVARSQ 157
G V E+ +G+ ++ IF + + H + LPD EV + ++
Sbjct: 91 GEVVRAERLMHGKTSLMHHDGKTIF--SDIPNPFTATRYHSLIVKKETLPDCLEVTSWTE 148
Query: 158 QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
+G + A+ ++ + G+Q+HPE + G E L+ F+
Sbjct: 149 EGEIMAIRHKTLPIEGVQFHPESIMTSHGKELLQNFI 185
|
Length = 195 |
| >gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 15/178 (8%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
+L++D+ + H + +R L + + + P +V+LS GP D
Sbjct: 519 ILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPADFDV- 577
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGR-MEILVERSSGIFGN 126
AG ++ AL+ G+ V G+C GLQ MV+ G + V + +G+ I V +F
Sbjct: 578 ---AGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIRVLGPDALFAG 634
Query: 127 K----KVG-HHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPE 179
VG +H + LP V A S G + A+E+R L +Q+HPE
Sbjct: 635 LPERLTVGRYHSLFARRDR-----LPAELTVTAESADGLIMAIEHRRLPLAAVQFHPE 687
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate [Amino acid biosynthesis, Aromatic amino acid family]. Length = 717 |
| >gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-07
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 20/164 (12%)
Query: 41 LDDITAKNPRVVILSGGPHSVH----SPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQ 96
L DI P +++S GP + + S A L +LG+C G Q + Q
Sbjct: 36 LTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLP--------ILGVCLGHQALGQ 87
Query: 97 KLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHG--DEAVVLPDGFEVVA 154
V + +G+ + G+F + + V H A LP FE+ A
Sbjct: 88 AFGARVVRARQVMHGKTSAICHSGQGVF--RGLNQPLTVTRYHSLVIAADSLPGCFELTA 145
Query: 155 RSQQGA----VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
S++G + + +R L G+Q+HPE S +G + L FL
Sbjct: 146 WSERGGEMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFL 189
|
Length = 191 |
| >gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 5e-07
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 8 VLILDYGSQYT---HLITRRIRSLSILSLCLS--GTCSLDDITAKNPRVVILSGGPHSVH 62
V +L + +R +S G D+ + +IL GGP +
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60
Query: 63 SPDAPAFPAGFLEWALSNGVYVLGICYGLQLMV 95
L A + G +LGIC G QL+V
Sbjct: 61 DLARDEALLALLREAAAAGKPILGICLGAQLLV 93
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115 |
| >gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 20/144 (13%)
Query: 50 RVVILSGGPHSVHSPDAPAFPAGFLEW---ALSNGVYVLGICYGLQLMVQKLDGVV---- 102
VI++G V D + +W A + G+ +LGICYG QL+ L G V
Sbjct: 56 AGVIITGSWAMV--TDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNP 113
Query: 103 ---KVGEKQEYGRMEILVE-RSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQ 158
+ G +E+ +F + ++H + LP G V+ARS Q
Sbjct: 114 AGRESGTVT----VELHPAAADDPLFAG--LPAQFPAHLTHLQSVLRLPPGAVVLARSAQ 167
Query: 159 GAVAAVENREKRLFGLQYHPEVTH 182
A +G+Q+HPE T
Sbjct: 168 DPHQAFRYGP-HAWGVQFHPEFTA 190
|
Length = 237 |
| >gnl|CDD|217093 pfam02540, NAD_synthase, NAD synthase | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 46/193 (23%), Positives = 72/193 (37%), Gaps = 38/193 (19%)
Query: 227 VICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDT--FEKDLHLPVT 283
V+ LSGG+DS V A L KA+G + + + + + E V D ++L +
Sbjct: 21 VVLGLSGGIDSAVVAYLAVKALGKENVLALIMPSI---NSSEEDVQDALALAENLGINYK 77
Query: 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDV 343
+D + + P G I + K LV GT
Sbjct: 78 TIDIKPIVRA-FSQLFQPAKDDLAKGNLKARIRMIILYAHANKFN----RLVLGT----- 127
Query: 344 IESCPPPGTGRTHSHTIKSHHNVGGLPK--DMKLKLIEPLKLLFKDEVRQLGRILNVPEQ 401
+ KS +G K D I P+ L+K +V +L + LNVPE+
Sbjct: 128 -------------GN--KSELALGYFTKYGDGACD-IAPIGDLYKTQVYELAKRLNVPER 171
Query: 402 FLKRHP----FPG 410
+K+ P +PG
Sbjct: 172 IIKKPPSADLWPG 184
|
NAD synthase (EC:6.3.5.1) is involved in the de novo synthesis of NAD and is induced by stress factors such as heat shock and glucose limitation. Length = 242 |
| >gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-06
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 8 VLILDYGSQYT---HLITRRIRSLSILSLCLS--GTCSLDDITAKNPRVVILSGGPHSVH 62
V +L +G +R +S G D+ + +IL GGP +
Sbjct: 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60
Query: 63 SPDAPAFPAGFLEWALSNGVYVLGICYGLQLM 94
L A + G VLGIC G QL+
Sbjct: 61 DLAWDEALLALLREAAAAGKPVLGICLGAQLL 92
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92 |
| >gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific small subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 34/199 (17%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
++++D+G +Y I RR++S + T DI + P ++LS GP P A
Sbjct: 195 IIVIDFGVKYN--ILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGD---PSAI 249
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGV---VKVGEKQEYGRMEILVERSSGIF 124
+ ++ L + + GIC G Q++ L+ +K G + G+
Sbjct: 250 HYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLKFGHR--------------GL- 294
Query: 125 GNKKVGHHQVVWMS---HGDEAVVLPDGFEVVARSQQ-----GAVAAVENREKRLFGLQY 176
N G +Q V ++ HG AV L + G VA + + K F +QY
Sbjct: 295 -NHPSGLNQQVEITSQNHG-FAVNLESLAKNKFYITHFNLNDGTVAGISHSPKPYFSVQY 352
Query: 177 HPEVTHSPEGMETL-RYFL 194
HPE + P + L YF+
Sbjct: 353 HPEASPGPHDADYLFEYFI 371
|
Length = 382 |
| >gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 5e-06
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 44/204 (21%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
V+++D+G + H I R + + ++I +P + LS GP P
Sbjct: 1 VVVIDFGVK--HNILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGD---PALL 55
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNK 127
+ L + + GIC G QL+ L + Y +M FG++
Sbjct: 56 DEAIKTVRKLLGKKIPIFGICLGHQLLALALGA-------KTY-KM---------KFGHR 98
Query: 128 KVGHHQVV--------WMS---HGDEAVV---LPDGFEVVARS-QQGAVAAVENREKRLF 172
G + V +++ HG AV LP G EV + G V + +++ +F
Sbjct: 99 --GSNHPVKDLITGRVYITSQNHG-YAVDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVF 155
Query: 173 GLQYHPEVTHSPEGMETLRYFLFD 196
+Q+HPE SP +T +LFD
Sbjct: 156 SVQFHPE--ASPGPHDT--EYLFD 175
|
This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178 |
| >gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 47/214 (21%), Positives = 75/214 (35%), Gaps = 52/214 (24%)
Query: 2 ENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSV 61
K V+++D+G + I RR+ + ++I NP + LS GP
Sbjct: 170 GGKKRRVVVIDFGVKQN--ILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPG-- 225
Query: 62 HSPDAPAFPAGFLE-WALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS 120
D A L + + GIC G QL+ + Y +M
Sbjct: 226 ---DPAAVKPAIETIRKLLEKIPIFGICLGHQLLALAFGA-------KTY-KM------- 267
Query: 121 SGIFGNKKVGHH-----------QVVWMS---HG---DEAVVLPDGFEVVARS-QQGAVA 162
K GH V ++ HG D + EV + G V
Sbjct: 268 -------KFGHRGGNHPVKDLITGRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVE 320
Query: 163 AVENREKRLFGLQYHPEVTHSPEGMETLRYFLFD 196
+ +++ +F +QYHPE + P +T +LFD
Sbjct: 321 GIRHKDLPVFSVQYHPEASPGPH--DT--EYLFD 350
|
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 358 |
| >gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 26/169 (15%)
Query: 40 SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG--VYVLGICYGLQLMVQK 97
+++++ KNPR V++S GP + P L+ L G V + G+C GLQ + +
Sbjct: 54 TVEELKRKNPRGVLISPGPGT------PQDSGISLQTVLELGPLVPLFGVCMGLQCIGEA 107
Query: 98 LDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA------VVLPDGF- 150
G + + +G M +SS + ++K + + A V+ D F
Sbjct: 108 FGGKIV---RSPFGVMH---GKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVIEKDTFP 161
Query: 151 ----EVVARSQQGAVAAVENRE-KRLFGLQYHPEVTHSPEGMETLRYFL 194
EV A ++ G + A +R+ K + G+Q+HPE + EG +R F+
Sbjct: 162 SDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFI 210
|
Length = 222 |
| >gnl|CDD|223115 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGLLRYKERERVM-D 272
+ I++ +E ++ A+SGG DS L+ + + V VD+GL Y ++E + +
Sbjct: 12 RAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELVE 71
Query: 273 TFEKDLHLPVTCVDATDQFLSKLKGVIDPETK 304
+ L +P+ TD +
Sbjct: 72 KLCEKLGIPLIVERVTDDLGRETLDGKSICAA 103
|
Length = 298 |
| >gnl|CDD|180590 PRK06490, PRK06490, glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 22/142 (15%)
Query: 51 VVILSGGPHSVHSPDAPAFPAGFLEW---ALSNGVYVLGICYGLQLMVQKLDGVVKVGEK 107
VI GGP S + PD F ++W L LGIC G Q++ + L V
Sbjct: 56 AVIF-GGPMSANDPDD--FIRREIDWISVPLKENKPFLGICLGAQMLARHLGARV---AP 109
Query: 108 QEYGRMEILVERSSGIFGNK--KVGHHQVVWMSH----GDEAVVLPDGFEVVARSQQGAV 161
GR+EI G + + + G + W E LP G E++A
Sbjct: 110 HPDGRVEI------GYYPLRPTEAGRALMHWPEMVYHWHREGFDLPAGAELLATGDDFPN 163
Query: 162 AAVENREKRLFGLQYHPEVTHS 183
A + +GLQ+HPEVT +
Sbjct: 164 QAFRYGDNA-WGLQFHPEVTRA 184
|
Length = 239 |
| >gnl|CDD|223249 COG0171, NadE, NAD synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 46/194 (23%), Positives = 68/194 (35%), Gaps = 43/194 (22%)
Query: 231 LSGGVDSTVAATLVHKAIG-----DRLHCVFVDNGL---LRYKERERVMDTFEKDLHLPV 282
LSGG+DS + L +A+G + + V + G ++ + + + D +
Sbjct: 32 LSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKE-I 90
Query: 283 TCVDATDQFLSKLKGVIDPETKRKIIGKEFI------CIFDAFAHDLEQKLGKKPAYLVQ 336
A D FL KL + + I I A A KLG LV
Sbjct: 91 NIKPAVDAFLKKLLKLFLGIYLEDLA-LGNIKARLRMVILYAIA----NKLG----GLVL 141
Query: 337 GTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRIL 396
GT + E G T V I P+ L+K +V L R L
Sbjct: 142 GT--GNKSEL----ALGYF---TKYGDGAVD----------INPIADLYKTQVYALARHL 182
Query: 397 NVPEQFLKRHPFPG 410
+PE+ LK+ P
Sbjct: 183 GIPEEILKKPPTAD 196
|
Length = 268 |
| >gnl|CDD|233019 TIGR00552, nadE, NAD+ synthetase | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 33/192 (17%)
Query: 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286
V+ LSGG+DS V A L +A+G++ H + + + + ++ + + L + +D
Sbjct: 25 VVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNID 84
Query: 287 ATDQFLSKLKGVIDPETKRKIIGKEFIC--IFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344
S + + K + + A + + K LV GT
Sbjct: 85 IAPIAASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHN----LLVLGT------ 134
Query: 345 ESCPPPGTGRTHSHTIKSHHNVGGLPK--DMKLKLIEPLKLLFKDEVRQLGRILNVPEQF 402
+ KS +G K D I P+ LFK +V +L + LNVPE+
Sbjct: 135 ------------GN--KSELMLGYFTKYGDGGCD-IAPIGDLFKTQVYELAKRLNVPERI 179
Query: 403 LKRHP----FPG 410
+++ P F G
Sbjct: 180 IEKPPTADLFDG 191
|
NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides]. Length = 250 |
| >gnl|CDD|238948 cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERE 268
V A SGGVDST+ A+GDR+ V + L +E E
Sbjct: 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELE 42
|
Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus. Length = 202 |
| >gnl|CDD|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 227 VICALSGGVDSTVAATLVHKAIG-DRLHCVF 256
V+ LSGG+DS + A L +A+G + + +F
Sbjct: 26 VVLGLSGGIDSALVAALAVRALGRENVLALF 56
|
The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source . Length = 248 |
| >gnl|CDD|238944 cd01986, Alpha_ANH_like, Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEK 276
V+ A SGG DS+VAA L+ K G ++ V VD+G+ E + ++
Sbjct: 1 VLVAFSGGKDSSVAAALLKKL-GYQVIAVTVDHGIS--PRLEDAKEIAKE 47
|
The domain forms a apha/beta/apha fold which binds to Adenosine group.. Length = 103 |
| >gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 19/164 (11%)
Query: 41 LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDG 100
+D I A NP +++S GP + P+ +E + + +LG+C G Q + Q G
Sbjct: 36 IDGIEALNPTHLVISPGPCT---PNEAGISLQAIE-HFAGKLPILGVCLGHQAIAQVFGG 91
Query: 101 VVKVGEKQEYGRMEILVERSSGIFGNKK-----VGHHQVVWMSHGDEAVVLPDGFEVVAR 155
V + +G+ + +F +H +V + LP+ FE+ A
Sbjct: 92 QVVRARQVMHGKTSPIRHTGRSVFKGLNNPLTVTRYHSLVV-----KNDTLPECFELTAW 146
Query: 156 SQQ-----GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
++ + +++ + +Q+HPE + +G + L FL
Sbjct: 147 TELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANFL 190
|
Length = 193 |
| >gnl|CDD|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 378 IEPLKLLFKDEVRQLGRILNVPEQFLKRHP 407
I P+ L+K +VR+L R L VPE + + P
Sbjct: 157 INPIGDLYKTQVRELARYLGVPESIIDKPP 186
|
The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source . Length = 248 |
| >gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 8/167 (4%)
Query: 52 VILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYG 111
V+LS GP + P+ + + G +LG+C G Q + V + +G
Sbjct: 50 VLLSPGPGT---PERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPELLHG 106
Query: 112 RMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRL 171
+ + G+ + S LP EV AR+ G + AV +RE +
Sbjct: 107 KTSSVHHTGVGVLAGLPDPFTATRYHSLTILPETLPAELEVTARTDSGVIMAVRHRELPI 166
Query: 172 FGLQYHPEVTHSPEGMETLRYFLFDVCG----VNAGWKLENVLDEEV 214
G+Q+HPE + G L +L VCG +LEN + V
Sbjct: 167 HGVQFHPESVLTEGGHRMLANWL-TVCGWAPDEALVRRLENEVAAAV 212
|
Length = 214 |
| >gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 45 TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKV 104
T NP V++LS GP +A P L + ++GIC G Q +V+ G V
Sbjct: 46 TMSNP-VLMLSPGPGV--PSEAGCMPELLTR--LRGKLPIIGICLGHQAIVEAYGGYVGQ 100
Query: 105 GEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAV 164
+ +G+ + +F + + V H +P G + A G V AV
Sbjct: 101 AGEILHGKASSIEHDGQAMFAG--LTNPLPVARYHSLVGSNIPAGLTINA-HFNGMVMAV 157
Query: 165 ENREKRLFGLQYHPEVTHSPEGMETL 190
+ R+ G Q+HPE + +G L
Sbjct: 158 RHDADRVCGFQFHPESILTTQGARLL 183
|
Length = 531 |
| >gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 22/166 (13%)
Query: 38 TCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97
T +++I A NP ++ LS GP H DA A ++ L + +LGIC G Q +++
Sbjct: 34 TVPVEEILAANPDLICLSPGPG--HPRDAGNMMA-LIDRTLGQ-IPLLGICLGFQALLEH 89
Query: 98 LDGVVKVGEKQEYGRMEILVERSSG----IFGN----------KKVGHHQVVWMSHGDEA 143
G V+ +G + ++ +G +F + G + H
Sbjct: 90 HGGKVEPC-GPVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGC 148
Query: 144 VVLPDGFEVVAR--SQQGAVA-AVENREKRLFGLQYHPEVTHSPEG 186
VV PDG E + S+ G V A E + + GLQ+HPE SP G
Sbjct: 149 VVAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTG 194
|
Length = 208 |
| >gnl|CDD|238956 cd01998, tRNA_Me_trans, tRNA methyl transferase | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 226 HVICALSGGVDSTVAATLVHKA 247
V+ A+SGGVDS+VAA L+ +
Sbjct: 1 KVVVAMSGGVDSSVAAALLKEQ 22
|
This family represents tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence. Length = 349 |
| >gnl|CDD|216090 pfam00733, Asn_synthase, Asparagine synthase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKER---ERVMDTFEKDLH 279
V LSGG+DS++ A L + L V Y E E V D D H
Sbjct: 20 VGVLLSGGLDSSLIAALAARQSDPPLKTFSVGFEGSDYDEAPYAELVADHLGTDHH 75
|
This family is always found associated with pfam00310. Members of this family catalyze the conversion of aspartate to asparagine. Length = 195 |
| >gnl|CDD|224522 COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 209 VLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERE 268
+L +++ +K + + V+ A SGGVDS++ A L +A+GD + V VD+ + +E E
Sbjct: 2 MLLSKLERLKKAIKEKKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIE 61
|
Length = 269 |
| >gnl|CDD|217339 pfam03054, tRNA_Me_trans, tRNA methyl transferase | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 225 DHVICALSGGVDSTVAATLVHKA 247
V+ A+SGGVDS+VAA L+ +
Sbjct: 1 MKVVVAMSGGVDSSVAAYLLKEQ 23
|
This family represents tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. Length = 355 |
| >gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 73 FLEWALSNGVYVLGICYGLQLMVQK------------LDGVVKVGEKQEYGRM---EILV 117
F+E + G VLGIC G+QL+ ++ + G V E ++ M E+
Sbjct: 63 FVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHP 122
Query: 118 ERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGA--VAAVENREKRLFGLQ 175
+ S + G + + H AV + V+A + G AAV+ + +FG Q
Sbjct: 123 VKESPLLNGIDEGAY--FYFVHSYYAVCEEE--AVLAYADYGEKFPAAVQ--KGNIFGTQ 176
Query: 176 YHPEVTHSPEGMETLRYFL 194
+HPE + G++ L FL
Sbjct: 177 FHPEKSGK-TGLKLLENFL 194
|
This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6 [Amino acid biosynthesis, Histidine family]. Length = 196 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| PLN02347 | 536 | GMP synthetase | 100.0 | |
| PRK00074 | 511 | guaA GMP synthase; Reviewed | 100.0 | |
| KOG1622 | 552 | consensus GMP synthase [Nucleotide transport and m | 100.0 | |
| COG0519 | 315 | GuaA GMP synthase, PP-ATPase domain/subunit [Nucle | 100.0 | |
| TIGR00884 | 311 | guaA_Cterm GMP synthase (glutamine-hydrolyzing), C | 100.0 | |
| PRK00919 | 307 | GMP synthase subunit B; Validated | 100.0 | |
| cd01997 | 295 | GMP_synthase_C The C-terminal domain of GMP synthe | 100.0 | |
| COG0518 | 198 | GuaA GMP synthase - Glutamine amidotransferase dom | 100.0 | |
| PF00958 | 93 | GMP_synt_C: GMP synthase C terminal domain domain; | 100.0 | |
| TIGR00888 | 188 | guaA_Nterm GMP synthase (glutamine-hydrolyzing), N | 100.0 | |
| cd01742 | 181 | GATase1_GMP_Synthase Type 1 glutamine amidotransfe | 100.0 | |
| CHL00101 | 190 | trpG anthranilate synthase component 2 | 100.0 | |
| PRK07765 | 214 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| PRK05637 | 208 | anthranilate synthase component II; Provisional | 100.0 | |
| PRK07649 | 195 | para-aminobenzoate/anthranilate synthase glutamine | 100.0 | |
| PRK08007 | 187 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| PRK05670 | 189 | anthranilate synthase component II; Provisional | 100.0 | |
| PRK06774 | 191 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| TIGR00566 | 188 | trpG_papA glutamine amidotransferase of anthranila | 100.0 | |
| PRK00758 | 184 | GMP synthase subunit A; Validated | 100.0 | |
| PRK08857 | 193 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| cd01743 | 184 | GATase1_Anthranilate_Synthase Type 1 glutamine ami | 100.0 | |
| PRK09522 | 531 | bifunctional glutamine amidotransferase/anthranila | 100.0 | |
| PLN02335 | 222 | anthranilate synthase | 100.0 | |
| COG0512 | 191 | PabA Anthranilate/para-aminobenzoate synthases com | 100.0 | |
| PRK06895 | 190 | putative anthranilate synthase component II; Provi | 100.0 | |
| PF00117 | 192 | GATase: Glutamine amidotransferase class-I; InterP | 100.0 | |
| TIGR01815 | 717 | TrpE-clade3 anthranilate synthase, alpha proteobac | 100.0 | |
| COG1606 | 269 | ATP-utilizing enzymes of the PP-loop superfamily [ | 100.0 | |
| PRK14607 | 534 | bifunctional glutamine amidotransferase/anthranila | 100.0 | |
| PRK13566 | 720 | anthranilate synthase; Provisional | 99.98 | |
| cd01744 | 178 | GATase1_CPSase Small chain of the glutamine-depend | 99.98 | |
| cd01748 | 198 | GATase1_IGP_Synthase Type 1 glutamine amidotransfe | 99.97 | |
| PRK13146 | 209 | hisH imidazole glycerol phosphate synthase subunit | 99.97 | |
| PRK05665 | 240 | amidotransferase; Provisional | 99.97 | |
| TIGR00268 | 252 | conserved hypothetical protein TIGR00268. The N-te | 99.97 | |
| PRK09065 | 237 | glutamine amidotransferase; Provisional | 99.97 | |
| PRK13170 | 196 | hisH imidazole glycerol phosphate synthase subunit | 99.97 | |
| PRK06490 | 239 | glutamine amidotransferase; Provisional | 99.97 | |
| PRK11366 | 254 | puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; | 99.97 | |
| PRK13181 | 199 | hisH imidazole glycerol phosphate synthase subunit | 99.97 | |
| PRK12564 | 360 | carbamoyl phosphate synthase small subunit; Review | 99.97 | |
| PRK07053 | 234 | glutamine amidotransferase; Provisional | 99.96 | |
| PRK13141 | 205 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| COG0118 | 204 | HisH Glutamine amidotransferase [Amino acid transp | 99.96 | |
| CHL00188 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| PRK07567 | 242 | glutamine amidotransferase; Provisional | 99.96 | |
| cd01741 | 188 | GATase1_1 Subgroup of proteins having the Type 1 g | 99.96 | |
| TIGR01368 | 358 | CPSaseIIsmall carbamoyl-phosphate synthase, small | 99.96 | |
| PRK13152 | 201 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| PLN02889 | 918 | oxo-acid-lyase/anthranilate synthase | 99.96 | |
| PRK13143 | 200 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| COG2071 | 243 | Predicted glutamine amidotransferases [General fun | 99.95 | |
| TIGR01823 | 742 | PabB-fungal aminodeoxychorismate synthase, fungal | 99.95 | |
| TIGR01855 | 196 | IMP_synth_hisH imidazole glycerol phosphate syntha | 99.95 | |
| PRK13525 | 189 | glutamine amidotransferase subunit PdxT; Provision | 99.95 | |
| PRK12838 | 354 | carbamoyl phosphate synthase small subunit; Review | 99.95 | |
| PRK08250 | 235 | glutamine amidotransferase; Provisional | 99.95 | |
| PLN02771 | 415 | carbamoyl-phosphate synthase (glutamine-hydrolyzin | 99.95 | |
| cd01745 | 189 | GATase1_2 Subgroup of proteins having the Type 1 g | 99.95 | |
| CHL00197 | 382 | carA carbamoyl-phosphate synthase arginine-specifi | 99.95 | |
| PRK14004 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.95 | |
| PRK13527 | 200 | glutamine amidotransferase subunit PdxT; Provision | 99.94 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 99.94 | |
| COG0505 | 368 | CarA Carbamoylphosphate synthase small subunit [Am | 99.94 | |
| PF07722 | 217 | Peptidase_C26: Peptidase C26; InterPro: IPR011697 | 99.93 | |
| TIGR01737 | 227 | FGAM_synth_I phosphoribosylformylglycinamidine syn | 99.92 | |
| KOG0026 | 223 | consensus Anthranilate synthase, beta chain [Amino | 99.91 | |
| PRK13142 | 192 | hisH imidazole glycerol phosphate synthase subunit | 99.91 | |
| PF02540 | 242 | NAD_synthase: NAD synthase; InterPro: IPR022310 NA | 99.91 | |
| cd01990 | 202 | Alpha_ANH_like_I This is a subfamily of Adenine nu | 99.9 | |
| cd01747 | 273 | GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot | 99.9 | |
| cd01746 | 235 | GATase1_CTP_Synthase Type 1 glutamine amidotransfe | 99.89 | |
| cd01749 | 183 | GATase1_PB Glutamine Amidotransferase (GATase_I) i | 99.89 | |
| TIGR03800 | 184 | PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl | 99.89 | |
| TIGR00342 | 371 | thiazole biosynthesis/tRNA modification protein Th | 99.88 | |
| PRK13980 | 265 | NAD synthetase; Provisional | 99.88 | |
| PRK01565 | 394 | thiamine biosynthesis protein ThiI; Provisional | 99.87 | |
| PTZ00323 | 294 | NAD+ synthase; Provisional | 99.87 | |
| cd00553 | 248 | NAD_synthase NAD+ synthase is a homodimer, which c | 99.86 | |
| TIGR00337 | 525 | PyrG CTP synthase. CTP synthase is involved in pyr | 99.86 | |
| PRK03619 | 219 | phosphoribosylformylglycinamidine synthase I; Prov | 99.86 | |
| PRK06186 | 229 | hypothetical protein; Validated | 99.86 | |
| TIGR00552 | 250 | nadE NAD+ synthetase. NAD+ synthetase is a nearly | 99.85 | |
| PRK00768 | 268 | nadE NAD synthetase; Reviewed | 99.85 | |
| KOG3179 | 245 | consensus Predicted glutamine synthetase [Nucleoti | 99.84 | |
| PRK05380 | 533 | pyrG CTP synthetase; Validated | 99.84 | |
| PRK05368 | 302 | homoserine O-succinyltransferase; Provisional | 99.84 | |
| PF03054 | 356 | tRNA_Me_trans: tRNA methyl transferase; InterPro: | 99.84 | |
| PRK08384 | 381 | thiamine biosynthesis protein ThiI; Provisional | 99.83 | |
| PRK00143 | 346 | mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed | 99.82 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.82 | |
| PRK08349 | 198 | hypothetical protein; Validated | 99.82 | |
| cd01993 | 185 | Alpha_ANH_like_II This is a subfamily of Adenine n | 99.82 | |
| TIGR02432 | 189 | lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t | 99.81 | |
| cd01712 | 177 | ThiI ThiI is required for thiazole synthesis in th | 99.81 | |
| PRK00876 | 326 | nadE NAD synthetase; Reviewed | 99.81 | |
| PF02568 | 197 | ThiI: Thiamine biosynthesis protein (ThiI); InterP | 99.81 | |
| cd01998 | 349 | tRNA_Me_trans tRNA methyl transferase. This family | 99.8 | |
| PF01171 | 182 | ATP_bind_3: PP-loop family; InterPro: IPR011063 Th | 99.8 | |
| PRK14665 | 360 | mnmA tRNA-specific 2-thiouridylase MnmA; Provision | 99.8 | |
| COG0482 | 356 | TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid | 99.79 | |
| PLN02327 | 557 | CTP synthase | 99.79 | |
| KOG1224 | 767 | consensus Para-aminobenzoate (PABA) synthase ABZ1 | 99.79 | |
| PLN02832 | 248 | glutamine amidotransferase subunit of pyridoxal 5' | 99.78 | |
| PRK11106 | 231 | queuosine biosynthesis protein QueC; Provisional | 99.78 | |
| COG0171 | 268 | NadE NAD synthase [Coenzyme metabolism] | 99.78 | |
| TIGR00420 | 352 | trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me | 99.77 | |
| PRK10696 | 258 | tRNA 2-thiocytidine biosynthesis protein TtcA; Pro | 99.77 | |
| cd01992 | 185 | PP-ATPase N-terminal domain of predicted ATPase of | 99.76 | |
| PRK13981 | 540 | NAD synthetase; Provisional | 99.75 | |
| PRK13820 | 394 | argininosuccinate synthase; Provisional | 99.75 | |
| cd01740 | 238 | GATase1_FGAR_AT Type 1 glutamine amidotransferase | 99.75 | |
| PRK00509 | 399 | argininosuccinate synthase; Provisional | 99.73 | |
| PRK14664 | 362 | tRNA-specific 2-thiouridylase MnmA; Provisional | 99.73 | |
| PRK01269 | 482 | tRNA s(4)U8 sulfurtransferase; Provisional | 99.73 | |
| COG0301 | 383 | ThiI Thiamine biosynthesis ATP pyrophosphatase [Co | 99.72 | |
| COG0037 | 298 | MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle | 99.71 | |
| TIGR00364 | 201 | exsB protein. This protein family is represented b | 99.71 | |
| COG0047 | 231 | PurL Phosphoribosylformylglycinamidine (FGAM) synt | 99.71 | |
| PRK01175 | 261 | phosphoribosylformylglycinamidine synthase I; Prov | 99.71 | |
| PRK13526 | 179 | glutamine amidotransferase subunit PdxT; Provision | 99.7 | |
| COG0504 | 533 | PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide | 99.7 | |
| PLN00200 | 404 | argininosuccinate synthase; Provisional | 99.7 | |
| KOG2805 | 377 | consensus tRNA (5-methylaminomethyl-2-thiouridylat | 99.69 | |
| PRK04527 | 400 | argininosuccinate synthase; Provisional | 99.69 | |
| PRK10660 | 436 | tilS tRNA(Ile)-lysidine synthetase; Provisional | 99.68 | |
| PRK14561 | 194 | hypothetical protein; Provisional | 99.68 | |
| cd01999 | 385 | Argininosuccinate_Synthase Argininosuccinate synth | 99.67 | |
| TIGR00032 | 394 | argG argininosuccinate synthase. argG in bacteria, | 99.66 | |
| PRK02628 | 679 | nadE NAD synthetase; Reviewed | 99.65 | |
| PF06508 | 209 | QueC: Queuosine biosynthesis protein QueC; InterPr | 99.64 | |
| cd01713 | 173 | PAPS_reductase This domain is found in phosphoaden | 99.63 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 99.63 | |
| COG0603 | 222 | Predicted PP-loop superfamily ATPase [General func | 99.62 | |
| cd01995 | 169 | ExsB ExsB is a transcription regulator related pro | 99.62 | |
| COG0311 | 194 | PDX2 Predicted glutamine amidotransferase involved | 99.58 | |
| PF13507 | 259 | GATase_5: CobB/CobQ-like glutamine amidotransferas | 99.5 | |
| PRK05253 | 301 | sulfate adenylyltransferase subunit 2; Provisional | 99.5 | |
| PF01174 | 188 | SNO: SNO glutamine amidotransferase family; InterP | 99.49 | |
| PRK08576 | 438 | hypothetical protein; Provisional | 99.44 | |
| cd01986 | 103 | Alpha_ANH_like Adenine nucleotide alpha hydrolases | 99.37 | |
| TIGR01857 | 1239 | FGAM-synthase phosphoribosylformylglycinamidine sy | 99.35 | |
| cd01996 | 154 | Alpha_ANH_like_III This is a subfamily of Adenine | 99.34 | |
| PLN02339 | 700 | NAD+ synthase (glutamine-hydrolysing) | 99.33 | |
| PRK05370 | 447 | argininosuccinate synthase; Validated | 99.33 | |
| KOG1559 | 340 | consensus Gamma-glutamyl hydrolase [Coenzyme trans | 99.32 | |
| COG0137 | 403 | ArgG Argininosuccinate synthase [Amino acid transp | 99.28 | |
| PRK02090 | 241 | phosphoadenosine phosphosulfate reductase; Provisi | 99.27 | |
| TIGR03573 | 343 | WbuX N-acetyl sugar amidotransferase. This enzyme | 99.26 | |
| TIGR02039 | 294 | CysD sulfate adenylyltransferase, small subunit. I | 99.26 | |
| KOG2387 | 585 | consensus CTP synthase (UTP-ammonia lyase) [Nucleo | 99.25 | |
| PLN03206 | 1307 | phosphoribosylformylglycinamidine synthase; Provis | 99.19 | |
| PF00764 | 388 | Arginosuc_synth: Arginosuccinate synthase; InterPr | 99.19 | |
| TIGR01735 | 1310 | FGAM_synt phosphoribosylformylglycinamidine syntha | 99.18 | |
| TIGR03679 | 218 | arCOG00187 arCOG00187 universal archaeal metal-bin | 99.17 | |
| PF04204 | 298 | HTS: Homoserine O-succinyltransferase ; InterPro: | 99.16 | |
| PRK05297 | 1290 | phosphoribosylformylglycinamidine synthase; Provis | 99.15 | |
| PRK13794 | 479 | hypothetical protein; Provisional | 99.14 | |
| PRK13795 | 636 | hypothetical protein; Provisional | 99.11 | |
| PRK12563 | 312 | sulfate adenylyltransferase subunit 2; Provisional | 99.11 | |
| cd03131 | 175 | GATase1_HTS Type 1 glutamine amidotransferase (GAT | 99.08 | |
| PF01507 | 174 | PAPS_reduct: Phosphoadenosine phosphosulfate reduc | 99.05 | |
| TIGR01001 | 300 | metA homoserine O-succinyltransferase. The apparen | 99.05 | |
| cd01994 | 194 | Alpha_ANH_like_IV This is a subfamily of Adenine n | 99.04 | |
| COG2117 | 198 | Predicted subunit of tRNA(5-methylaminomethyl-2-th | 99.0 | |
| PRK08557 | 417 | hypothetical protein; Provisional | 98.99 | |
| PRK06278 | 476 | cobyrinic acid a,c-diamide synthase; Validated | 98.89 | |
| KOG3210 | 226 | consensus Imidazoleglycerol-phosphate synthase sub | 98.89 | |
| cd01750 | 194 | GATase1_CobQ Type 1 glutamine amidotransferase (GA | 98.87 | |
| TIGR00434 | 212 | cysH phosophoadenylyl-sulfate reductase (thioredox | 98.84 | |
| PHA03366 | 1304 | FGAM-synthase; Provisional | 98.84 | |
| TIGR02057 | 226 | PAPS_reductase phosphoadenosine phosphosulfate red | 98.84 | |
| COG0175 | 261 | CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr | 98.81 | |
| TIGR01739 | 1202 | tegu_FGAM_synt herpesvirus tegument protein/v-FGAM | 98.79 | |
| cd03130 | 198 | GATase1_CobB Type 1 glutamine amidotransferase (GA | 98.76 | |
| KOG1706 | 412 | consensus Argininosuccinate synthase [Amino acid t | 98.72 | |
| cd01991 | 269 | Asn_Synthase_B_C The C-terminal domain of Asparagi | 98.72 | |
| COG1365 | 255 | Predicted ATPase (PP-loop superfamily) [General fu | 98.71 | |
| TIGR03183 | 447 | DNA_S_dndC putative sulfurtransferase DndC. Member | 98.61 | |
| PRK06850 | 507 | hypothetical protein; Provisional | 98.6 | |
| PF00733 | 255 | Asn_synthase: Asparagine synthase; InterPro: IPR00 | 98.46 | |
| COG1897 | 307 | MetA Homoserine trans-succinylase [Amino acid tran | 98.46 | |
| cd01984 | 86 | AANH_like Adenine nucleotide alpha hydrolases supe | 98.44 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 98.41 | |
| KOG1907 | 1320 | consensus Phosphoribosylformylglycinamidine syntha | 98.41 | |
| TIGR01536 | 467 | asn_synth_AEB asparagine synthase (glutamine-hydro | 98.39 | |
| KOG2840 | 347 | consensus Uncharacterized conserved protein with s | 98.2 | |
| TIGR00289 | 222 | conserved hypothetical protein TIGR00289. Homologo | 98.08 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 98.07 | |
| PLN02549 | 578 | asparagine synthase (glutamine-hydrolyzing) | 98.05 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 98.01 | |
| PTZ00077 | 586 | asparagine synthetase-like protein; Provisional | 97.99 | |
| PF07685 | 158 | GATase_3: CobB/CobQ-like glutamine amidotransferas | 97.98 | |
| cd01653 | 115 | GATase1 Type 1 glutamine amidotransferase (GATase1 | 97.94 | |
| PRK09431 | 554 | asnB asparagine synthetase B; Provisional | 97.9 | |
| cd03128 | 92 | GAT_1 Type 1 glutamine amidotransferase (GATase1)- | 97.89 | |
| TIGR03108 | 628 | eps_aminotran_1 exosortase 1 system-associated ami | 97.85 | |
| TIGR02055 | 191 | APS_reductase thioredoxin-dependent adenylylsulfat | 97.84 | |
| PRK13896 | 433 | cobyrinic acid a,c-diamide synthase; Provisional | 97.82 | |
| TIGR00313 | 475 | cobQ cobyric acid synthase CobQ. | 97.74 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 97.69 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 97.63 | |
| TIGR03104 | 589 | trio_amidotrans asparagine synthase family amidotr | 97.62 | |
| PRK11780 | 217 | isoprenoid biosynthesis protein with amidotransfer | 97.57 | |
| TIGR00290 | 223 | MJ0570_dom MJ0570-related uncharacterized domain. | 97.41 | |
| cd03169 | 180 | GATase1_PfpI_1 Type 1 glutamine amidotransferase ( | 97.39 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 97.39 | |
| COG0367 | 542 | AsnB Asparagine synthase (glutamine-hydrolyzing) [ | 97.38 | |
| cd03146 | 212 | GAT1_Peptidase_E Type 1 glutamine amidotransferase | 97.35 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 97.33 | |
| TIGR01382 | 166 | PfpI intracellular protease, PfpI family. The memb | 97.33 | |
| KOG0571 | 543 | consensus Asparagine synthase (glutamine-hydrolyzi | 97.26 | |
| COG3442 | 250 | Predicted glutamine amidotransferase [General func | 97.21 | |
| cd03134 | 165 | GATase1_PfpI_like A type 1 glutamine amidotransfer | 97.17 | |
| cd03147 | 231 | GATase1_Ydr533c_like Type 1 glutamine amidotransfe | 97.17 | |
| cd03144 | 114 | GATase1_ScBLP_like Type 1 glutamine amidotransfera | 97.17 | |
| PF09825 | 367 | BPL_N: Biotin-protein ligase, N terminal; InterPro | 97.13 | |
| cd03133 | 213 | GATase1_ES1 Type 1 glutamine amidotransferase (GAT | 97.1 | |
| PRK11574 | 196 | oxidative-stress-resistance chaperone; Provisional | 96.94 | |
| cd03132 | 142 | GATase1_catalase Type 1 glutamine amidotransferase | 96.89 | |
| KOG2594 | 396 | consensus Uncharacterized conserved protein [Funct | 96.79 | |
| PRK04155 | 287 | chaperone protein HchA; Provisional | 96.56 | |
| PF01902 | 218 | ATP_bind_4: ATP-binding region; InterPro: IPR00276 | 96.55 | |
| COG3969 | 407 | Predicted phosphoadenosine phosphosulfate sulfotra | 96.54 | |
| cd03148 | 232 | GATase1_EcHsp31_like Type 1 glutamine amidotransfe | 96.54 | |
| cd03135 | 163 | GATase1_DJ-1 Type 1 glutamine amidotransferase (GA | 96.43 | |
| COG0693 | 188 | ThiJ Putative intracellular protease/amidase [Gene | 96.33 | |
| PF01965 | 147 | DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T | 96.24 | |
| cd03141 | 221 | GATase1_Hsp31_like Type 1 glutamine amidotransfera | 96.07 | |
| cd03140 | 170 | GATase1_PfpI_3 Type 1 glutamine amidotransferase ( | 96.05 | |
| PRK05282 | 233 | (alpha)-aspartyl dipeptidase; Validated | 96.02 | |
| cd03129 | 210 | GAT1_Peptidase_E_like Type 1 glutamine amidotransf | 95.8 | |
| KOG2303 | 706 | consensus Predicted NAD synthase, contains CN hydr | 95.67 | |
| PF02677 | 176 | DUF208: Uncharacterized BCR, COG1636; InterPro: IP | 95.46 | |
| PRK11249 | 752 | katE hydroperoxidase II; Provisional | 95.31 | |
| PF06283 | 217 | ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A. | 95.1 | |
| TIGR01383 | 179 | not_thiJ DJ-1 family protein. This model represent | 94.98 | |
| COG0519 | 315 | GuaA GMP synthase, PP-ATPase domain/subunit [Nucle | 94.95 | |
| cd03138 | 195 | GATase1_AraC_2 AraC transcriptional regulators hav | 94.61 | |
| KOG0573 | 520 | consensus Asparagine synthase [Amino acid transpor | 94.31 | |
| COG1636 | 204 | Uncharacterized protein conserved in bacteria [Fun | 94.28 | |
| KOG2764 | 247 | consensus Putative transcriptional regulator DJ-1 | 94.11 | |
| cd03137 | 187 | GATase1_AraC_1 AraC transcriptional regulators hav | 93.63 | |
| cd03136 | 185 | GATase1_AraC_ArgR_like AraC transcriptional regula | 91.87 | |
| cd03139 | 183 | GATase1_PfpI_2 Type 1 glutamine amidotransferase ( | 91.69 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 90.92 | |
| COG4285 | 253 | Uncharacterized conserved protein [Function unknow | 90.33 | |
| cd03145 | 217 | GAT1_cyanophycinase Type 1 glutamine amidotransfer | 89.36 | |
| PF13278 | 166 | DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M | 89.03 | |
| PRK03378 | 292 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 88.49 | |
| PRK09393 | 322 | ftrA transcriptional activator FtrA; Provisional | 87.67 | |
| KOG2316 | 277 | consensus Predicted ATPase (PP-loop superfamily) [ | 87.0 | |
| PRK04539 | 296 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 83.93 | |
| PRK02155 | 291 | ppnK NAD(+)/NADH kinase family protein; Provisiona | 83.17 | |
| TIGR02069 | 250 | cyanophycinase cyanophycinase. This model describe | 82.96 | |
| COG4090 | 154 | Uncharacterized protein conserved in archaea [Func | 82.6 | |
| PRK03767 | 200 | NAD(P)H:quinone oxidoreductase; Provisional | 82.42 |
| >PLN02347 GMP synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-138 Score=1113.80 Aligned_cols=525 Identities=81% Similarity=1.298 Sum_probs=493.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||||+||+++++|++|++|++++++|++.+.+++...++|||||||||+++++.+.|++...+++.+.+.++|||
T Consensus 11 ~~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPIL 90 (536)
T PLN02347 11 DVVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVL 90 (536)
T ss_pred CEEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEE
Confidence 57999999999999999999999999999999988888755689999999999999988788888888888888899999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE 165 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~ 165 (531)
|||+|||+|++++||+|.+...+++|++.+++..++++|+++++...+.+|++|+|.+..+|++|+++|++++|.++|++
T Consensus 91 GIClG~QlLa~alGG~V~~~~~~e~G~~~v~i~~~~~Lf~~l~~~~~~~v~~~Hsd~V~~lP~g~~vlA~s~~~~iaai~ 170 (536)
T PLN02347 91 GICYGMQLIVQKLGGEVKPGEKQEYGRMEIRVVCGSQLFGDLPSGETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIE 170 (536)
T ss_pred EECHHHHHHHHHcCCEEEecCCcccceEEEEEcCCChhhhcCCCCceEEEEEEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Confidence 99999999999999999998888999999998888899999876433789999999999999999999999999999999
Q ss_pred ECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHH
Q 039743 166 NREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVH 245 (531)
Q Consensus 166 ~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~ 245 (531)
+.++++||+|||||+++++.|.+||+||++++|+|+++|+|.+++++.++.+++.+++.+++++||||||||+|+|++++
T Consensus 171 ~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~~~~~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~ 250 (536)
T PLN02347 171 NRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVH 250 (536)
T ss_pred ECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcCcchHHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhh
Q 039743 246 KAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQ 325 (531)
Q Consensus 246 k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~ 325 (531)
+++|++++|+|+|+|+++.+|.+++.+.+|+++|++++++|+++.|++.|++++||++||++||+.|+++|.+++++++.
T Consensus 251 ~alG~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e~fl~~l~~~~~pe~k~~~~~~~f~~~f~~~~~~~~~ 330 (536)
T PLN02347 251 KAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASERFLSKLKGVTDPEKKRKIIGAEFIEVFDEFAHKLEQ 330 (536)
T ss_pred HHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcHHHHhhCCCCCChHHhcchhCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999987779999999999999999999999999999999999999999999999977754
Q ss_pred hcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCcccccc
Q 039743 326 KLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKR 405 (531)
Q Consensus 326 ~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~ 405 (531)
..+.+.++|+|||+|||++||...+|.++.++++||||||++++++....++++||++++|+|||++|+++|||.+++|+
T Consensus 331 ~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~hhn~~~l~~~~~~~ii~PL~~l~K~eVR~la~~lgl~~~~~~~ 410 (536)
T PLN02347 331 KLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKR 410 (536)
T ss_pred hhCCCCcEEccCCcccccccccCCCCCccccccceeeecccccChHHHHCccccchhhCcHHHHHHHHHHcCCCHHHhcC
Confidence 34434689999999999999743233222458899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCcch-HHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecC
Q 039743 406 HPFPGPGLAVRVLGDVTEGN-SLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQ 484 (531)
Q Consensus 406 ~P~~~p~la~r~~g~vt~~~-l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~ 484 (531)
+||||||||+||+|+++.++ | +++++||.+++++|++.|||+++||+|+||||+||||||||+|+|+|+++||+|+|.
T Consensus 411 ~p~p~p~La~Ri~g~~~~~~~l-~~~~~ad~i~~~~~~~~~~~~~~~q~~~~l~p~~~vgv~~d~r~y~~~~~lr~v~~~ 489 (536)
T PLN02347 411 HPFPGPGLAVRVLGDVTEGNAL-DILRQVDEIFINSIKDAGLYDEIWQAFAVFLPVKSVGVQGDQRTHSHVVALRAVTSE 489 (536)
T ss_pred CCcCCCCEEeeeCCccCCHHHH-HHHHHHHHHHHHHHHHcCCccccceeeEEEeCccccccCCCCCcccceEEEEEeccC
Confidence 99999999999999887766 7 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 485 DGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 485 d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
|||||+|+++||++|++|++||+|+++||||||||+|||||||||||
T Consensus 490 d~mta~~~~~~~~~l~~~~~~i~~~~~~v~rv~yd~t~kpp~tie~e 536 (536)
T PLN02347 490 DGMTADWYHFEHKFLDDVSRKICNEVRGVNRVVYDITSKPPSTIEWE 536 (536)
T ss_pred ccCCCCcccCCHHHHHHHHHHHhhcCCCcceEEeeCCCCCCCcccCC
Confidence 99999999999999999999999999999999999999999999998
|
|
| >PRK00074 guaA GMP synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-133 Score=1076.26 Aligned_cols=509 Identities=56% Similarity=0.951 Sum_probs=483.8
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
++++|+|||||+||+++++|+||++|++++++|++.+.+++...++|||||||||+++++...++....+++ .++|
T Consensus 2 ~~~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i~~----~~~P 77 (511)
T PRK00074 2 HHDKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEIFE----LGVP 77 (511)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCCCccccHHHHh----CCCC
Confidence 346899999999999999999999999999999988877775557899999999999998877776665554 4999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~a 163 (531)
|||||+|||+|++++||+|.+...+++|++.++++.++++|+++++. +.+|++|+|.|.++|++++++|.+++++++|
T Consensus 78 vLGIC~G~QlLa~~lGG~V~~~~~~e~G~~~i~i~~~~~Lf~~l~~~--~~v~~~H~d~V~~lp~g~~vlA~s~~~~v~a 155 (511)
T PRK00074 78 VLGICYGMQLMAHQLGGKVERAGKREYGRAELEVDNDSPLFKGLPEE--QDVWMSHGDKVTELPEGFKVIASTENCPIAA 155 (511)
T ss_pred EEEECHHHHHHHHHhCCeEEecCCcccceEEEEEcCCChhhhcCCCc--eEEEEECCeEEEecCCCcEEEEEeCCCCEEE
Confidence 99999999999999999999998899999999998888999999887 9999999999999999999999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHH
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATL 243 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l 243 (531)
+++.++++||+|||||+++++.|.+||+||++++|+|+++|+|++++++.++.|++.++ +++++||+|||+||+|+|++
T Consensus 156 i~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~~~~~~~~l~~~v~-~~~vlva~SGGvDS~vll~l 234 (511)
T PRK00074 156 IANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIREQVG-DKKVILGLSGGVDSSVAAVL 234 (511)
T ss_pred EEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHhcC-CCcEEEEeCCCccHHHHHHH
Confidence 99988999999999999999999999999999999999999999999999999999998 68999999999999999999
Q ss_pred HHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHh
Q 039743 244 VHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDL 323 (531)
Q Consensus 244 ~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~ 323 (531)
+++++|.+++|+|+|+|+++.+|.+++.+.+|+++|++++++|+++.|++.++++++|+.+|++||+.|+++|.+.|++.
T Consensus 235 l~~~lg~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~ 314 (511)
T PRK00074 235 LHKAIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKL 314 (511)
T ss_pred HHHHhCCceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHHHHHhccCCCCcHHhhhhhhHHHHHHHHHHHHHc
Confidence 99999999999999999998888889887788999999999999999998888999999999999999999999999998
Q ss_pred -hhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccc
Q 039743 324 -EQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQF 402 (531)
Q Consensus 324 -g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~ 402 (531)
| +++|++|||+||++|+.... + ++.+|+|||++|+++....++++||.+++|+|||++|+++|||.++
T Consensus 315 ~g------~~~latGhn~dD~~Et~~~~-~----~~~ik~~~~l~Gl~~~~~~~ii~PL~~l~K~EIr~~a~~~gLp~~~ 383 (511)
T PRK00074 315 GG------VKFLAQGTLYPDVIESGGTK-K----AATIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKLGLELGLPEEI 383 (511)
T ss_pred cC------CCEEEECCCcchhhhhcCCC-C----ccccccccCccCcChhHhcccccchhhcCHHHHHHHHHHcCCCHHH
Confidence 6 89999999999999986443 5 6799999999999988888999999999999999999999999999
Q ss_pred cccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceeeecCCCceeeeEEEEEeee
Q 039743 403 LKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVT 482 (531)
Q Consensus 403 ~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~ 482 (531)
+|++|||+||||+|++|++|+|+| +++++||++++++|++.|+|+++||+|+||||+||||||||.|+|+|+++||+|+
T Consensus 384 ~~~~p~p~~~la~Ri~g~it~e~l-~~~~~ae~~~~~~~~~~~~~~~~~q~~~vl~p~~~vgv~gd~r~y~~~~~lr~~~ 462 (511)
T PRK00074 384 VYRHPFPGPGLAIRILGEVTKEKL-DILREADAIFIEELRKAGLYDKIWQAFAVLLPVKSVGVMGDGRTYDYVVALRAVT 462 (511)
T ss_pred hCCCCCCCCceeeEEecccCHHHH-HHHHHHHHHHHHHHHHcCCccCcceeeEEEeCcceeeeCCCCCccceEEEEEEEc
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 483 SQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 483 ~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
|.|||||+|+++||++|++|++||+|++||||||+||+|||||||||||
T Consensus 463 ~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~yd~~~kpp~tie~e 511 (511)
T PRK00074 463 SIDGMTADWARLPYDFLEKISNRIINEVKGVNRVVYDITSKPPATIEWE 511 (511)
T ss_pred ccCccccCCccCCHHHHHHHHHHHhhcCCCcceEEEECCCCCCCCccCC
Confidence 9999999999999999999999999999999999999999999999998
|
|
| >KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-133 Score=992.55 Aligned_cols=519 Identities=51% Similarity=0.824 Sum_probs=496.8
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
..++|+|||||+||.++|.|++|++.++++++|.+++...+...+|.||||||||.|+|++++|++++++|++ ++|
T Consensus 15 ~~d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~----~vp 90 (552)
T KOG1622|consen 15 YFDTILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFEL----GVP 90 (552)
T ss_pred cCceEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhcc----CCc
Confidence 3478999999999999999999999999999999999988877899999999999999999999999999999 999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~a 163 (531)
|||||||||+|++.+||+|.+...+|+|...|.+.....+|+++.......||++|+|.+..+|+||++.|.+.+.++++
T Consensus 91 vLGICYGmQ~i~~~~Gg~V~~~~~RE~G~~eI~v~~~~~lF~~~~~~~~~~VlltHgdsl~~v~~g~kv~a~s~n~~va~ 170 (552)
T KOG1622|consen 91 VLGICYGMQLINKLNGGTVVKGMVREDGEDEIEVDDSVDLFSGLHKTEFMTVLLTHGDSLSKVPEGFKVVAFSGNKPVAG 170 (552)
T ss_pred ceeehhHHHHHHHHhCCccccccccCCCCceEEcCchhhhhhhhcccceeeeeeccccchhhccccceeEEeecCcceee
Confidence 99999999999999999999999999999999998887899998876323599999999999999999999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHH
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATL 243 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l 243 (531)
+.+..+++||+|||||+++++.|.++++||++++|+|.++|+|+++.++.+++|+++++ +.+|++++|||+||+||++|
T Consensus 171 i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tmenre~e~I~~i~k~vG-~~~Vl~~vSGgvdStV~a~L 249 (552)
T KOG1622|consen 171 ILNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTMENREEECINEIRKWVG-DYKVLVAVSGGVDSTVCAAL 249 (552)
T ss_pred ehhhhhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcchhhhhHHHHHHHHHHhc-ccceEEEecCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHH
Q 039743 244 VHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHD 322 (531)
Q Consensus 244 ~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~ 322 (531)
+++|+| .+++|+++|||++++.|.+.+++.+.+ |||++.++|+++.|.++|++++|||+||+++|++|++++...+.+
T Consensus 250 l~~alg~~R~~ai~vdNG~mrk~Ea~~V~~tl~~-lgi~i~v~~as~~f~s~L~~~~dPE~KRkiIG~tfikv~~~~~~~ 328 (552)
T KOG1622|consen 250 LRRALGPDRVHAIHVDNGFMRKKEAEQVEKTLVY-LGIPITVVDASETFLSKLKGVTDPEEKRKIIGRTFIKVFDPVASE 328 (552)
T ss_pred HHHhhCCCceEEEEecccchhhhHHHHHHHHHHH-cCCceEEeechHHHHHhhcccCCHHHhceecccceeeeCcHHHHH
Confidence 999999 999999999999999999999988876 999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc-cc-ceecccccCCHHHHHHHHHHcCCCc
Q 039743 323 LEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM-KL-KLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 323 ~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~-~~-~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
+..+.+....+++|||++||++||++++|+| ++++||||||++++.+.+ .. ++++||.+++|||||++++.+|+|.
T Consensus 329 l~~k~~~~~~flaQgtL~Pd~ieS~s~~g~~--~a~tIKThhn~~~L~r~lrklgK~ieplk~~~kDEvr~lgk~lGlp~ 406 (552)
T KOG1622|consen 329 LNKKHGEKESFLAQGTLRPDLIESASVYGSG--HAETIKTHHNDTGLIRDLRKLGKVIEPLKDFHKDEVRELGKDLGLPE 406 (552)
T ss_pred hhhccCccceeeecccccchhhhhccccCCc--hhhhhhcccccchHHHHHHHhcccCchhHHHHHHHHHHhhhhcCCch
Confidence 8876665567999999999999999999885 799999999999998876 44 8999999999999999999999999
Q ss_pred cccccCCCCCCCccccccCCCCc---chHHHHHhhhhHHHHHHHH-HcCcccccccce---eeecCcceeeecCCCceee
Q 039743 401 QFLKRHPFPGPGLAVRVLGDVTE---GNSLDILRQVDEIFIQSIK-EAGLYDLIWQAF---AVFLPVRSVGVQGDQRTHS 473 (531)
Q Consensus 401 ~~~~~~P~~~p~la~r~~g~vt~---~~l~~~~~~~d~~~~~~l~-~~~~~~~~~q~~---~vllp~~~~gv~gd~r~~~ 473 (531)
+++|||||||||||+|++|.++. ..+ +.++++++++++.|+ ..|+|+++||+| |.+||+||||||||+|+|+
T Consensus 407 ~Lv~rhPfpGPgLaIRvL~~~~~~~~~~~-~ii~~~~~~f~~~i~~~~glye~i~q~f~~~A~llpirtvGVqgDkrsys 485 (552)
T KOG1622|consen 407 SLVPRHPFPGPGLAIRVLCAVTARDLPQL-EIIRKVDRIFIKSIRKDHGLYERIIQAFQIPARLLPIRTVGVQGDKRSYS 485 (552)
T ss_pred hhhccCCCCCCCeEEEEeeccccccchHH-HHHHHHHHHHHHHhcccchhHHHHHhhccCcceecceeeeeeecccceec
Confidence 99999999999999999999988 666 899999999999999 889999999999 9999999999999999999
Q ss_pred eEEEE-----EeeecCCCccccccc----ccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 474 HVVAL-----RAVTSQDGMTADWYY----FEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 474 ~~~~l-----r~~~~~d~mt~~~~~----~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
|+|+| |++.|+|||||+|+. +|.++|.+++++|+|+|+|||||+||+|||||||+|||
T Consensus 486 ~vialPPr~~R~~~t~DFMTg~p~~pg~e~p~k~l~kmvt~I~nkv~GIsRVlyDlTSKPPgTtEWE 552 (552)
T KOG1622|consen 486 YVIALPPRPLRAFTTSDFMTGDPATPGNEFPVKFLLKMVTEICNKVPGISRVLYDLTSKPPGTTEWE 552 (552)
T ss_pred eEEecCCccccceecccccccCCCCCCccccHHHHHHHHHHHHhcCccHHHHHhhcccCCCCCcCCC
Confidence 99999 999999999999997 99999999999999999999999999999999999999
|
|
| >COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-111 Score=795.04 Aligned_cols=315 Identities=62% Similarity=1.009 Sum_probs=309.5
Q ss_pred cccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcE
Q 039743 203 GWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPV 282 (531)
Q Consensus 203 ~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~ 282 (531)
+|+|.+|+++.++.||++++ ++++++|+||||||+|+|.|+++|+|++++|+|+|||++|++|.+++.+.+.+++|+++
T Consensus 1 ~w~~~~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl 79 (315)
T COG0519 1 MWTMENFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNL 79 (315)
T ss_pred CCCHHHHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHhhcceEEEEecCCcccCCcHHHHHHHHHhhcCCce
Confidence 59999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccc
Q 039743 283 TCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKS 362 (531)
Q Consensus 283 ~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt 362 (531)
..||+++.|++.++|++|||+||+++|+.|+++|+++|++++ ++||+|||+|||++||+ .|+ +.+|||
T Consensus 80 ~~VdA~~~Fl~~L~GvtDPE~KRKiIG~~FI~VFe~ea~k~~------~~~LaQGTiYpDvIES~--~g~----~~~IKS 147 (315)
T COG0519 80 IVVDAKDRFLSALKGVTDPEEKRKIIGREFIEVFEEEAKKLG------AEFLAQGTIYPDVIESG--TGK----AGTIKS 147 (315)
T ss_pred EEEchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCC------cceEEecccccceeeec--CCC----CCcccc
Confidence 999999999999999999999999999999999999999998 89999999999999986 344 689999
Q ss_pred ccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHH
Q 039743 363 HHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIK 442 (531)
Q Consensus 363 ~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~ 442 (531)
|||+||+|+.+++++++||++|||||||++|++||||.+++||||||||||++|++|++|+|+| +++|+||.|++++|+
T Consensus 148 HHNVGGLP~~m~lkLvEPLr~LfKDEVR~lg~~LGlp~~iv~RhPFPGPGLaiRilGevt~Ekl-~ilR~Ad~I~~eEl~ 226 (315)
T COG0519 148 HHNVGGLPEDMKLKLVEPLRELFKDEVRELGRELGLPEEIVYRHPFPGPGLAVRILGEVTREKL-EILREADAIVEEELR 226 (315)
T ss_pred ccccCCCccccceeeeHHHHHHhHHHHHHHHHHhCCCHHHhccCCCCCCCeEEEeecccCHHHH-HHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HcCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCC
Q 039743 443 EAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITS 522 (531)
Q Consensus 443 ~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~ 522 (531)
+.|+|+++||+|+||||+||||||||+|+|+|+++||+|+|.|||||||+++||++|+++|+||+||||+||||||||||
T Consensus 227 ~agly~~~wQaFavll~vksvGV~GD~RtY~~~valRaV~s~D~MTa~~~~lp~~~L~~is~RI~nEv~~V~RVvYDIts 306 (315)
T COG0519 227 KAGLYDKIWQAFAVLLPVKSVGVMGDGRTYGYVVALRAVESIDGMTADWARLPYDVLEKISNRITNEVPGVNRVVYDITS 306 (315)
T ss_pred hcCcchhhhHHHhhccccceeeecCCCcccCceEEEEEEecccccccccccCCHHHHHHHHHHhhhcCCCcceEEeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccC
Q 039743 523 KPPSTIEWE 531 (531)
Q Consensus 523 k~p~~~~~~ 531 (531)
|||||||||
T Consensus 307 KPPaTIEwE 315 (315)
T COG0519 307 KPPATIEWE 315 (315)
T ss_pred CCCCCccCC
Confidence 999999998
|
|
| >TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-89 Score=692.34 Aligned_cols=311 Identities=63% Similarity=1.021 Sum_probs=295.8
Q ss_pred chhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEEC
Q 039743 208 NVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDA 287 (531)
Q Consensus 208 ~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~ 287 (531)
+|+++.++.|++.++ +++++||+|||+||+|+|+++++++|.+++|+|+|+|+++.+|.+++.+.+|+++|++++++|+
T Consensus 1 ~~~~~~~~~l~~~v~-~~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~ 79 (311)
T TIGR00884 1 NFIEEAVEEIREQVG-DAKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDA 79 (311)
T ss_pred ChHHHHHHHHHHHhC-CCcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeC
Confidence 367888999999998 5899999999999999999999999999999999999999999988887667789999999999
Q ss_pred chHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccC
Q 039743 288 TDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVG 367 (531)
Q Consensus 288 ~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~ 367 (531)
++.|++.++++++|+.+|++|++.|+++|.++|+++|. +++|++||++||++|+.. |+ +++|++|||++
T Consensus 80 ~e~fl~~l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~-----~~~la~Gt~~dD~~Es~~--G~----~~~iks~~~~~ 148 (311)
T TIGR00884 80 KERFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGD-----AEYLAQGTIYPDVIESAA--GT----AHVIKSHHNVG 148 (311)
T ss_pred cHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHCCC-----CCEEEECCCChhhhhhcc--Ch----hHhhhccCccc
Confidence 99999888889999999999999999999999998762 689999999999999642 44 67899999999
Q ss_pred CCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcc
Q 039743 368 GLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLY 447 (531)
Q Consensus 368 ~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~ 447 (531)
++++...+++++||.+++|+|||++|+++|||.+++|++||||||||+||+|++|+|+| +++++||++++++|++.|+|
T Consensus 149 gl~~~~~~~ii~PL~~l~K~EVr~la~~lgLp~~~~~~~Pf~~p~La~Ri~g~it~e~l-~~~~~ae~~~~~~~~~~~~~ 227 (311)
T TIGR00884 149 GLPEDMKLKLVEPLRELFKDEVRKLGKELGLPEEIVWRHPFPGPGLAVRVLGEVTKEKL-EILRRADAIVIEELKKAGLY 227 (311)
T ss_pred cCChhhcCceEEEcccCcHHHHHHHHHHcCCCHHHhhCCCCCCCceEeeeecccCHHHH-HHHHHHHHHHHHHHHHcCCc
Confidence 99988889999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCC
Q 039743 448 DLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPST 527 (531)
Q Consensus 448 ~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~ 527 (531)
+++||+|+||||+||||||||+|||+|+++||+|+|.|||||+|+++||++|++|++||+|++||||||+||||||||||
T Consensus 228 ~~~~q~~~~llp~~~vgv~gd~r~y~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~v~~v~rv~ydi~~kpp~t 307 (311)
T TIGR00884 228 DKVWQAFAVLLPVKSVGVMGDGRTYGYVIALRAVESIDGMTADWARLPYDFLERISNRITNEVPGVNRVVYDITSKPPAT 307 (311)
T ss_pred cccccceEEEeCccccccCCCCCcccceEEEEEEecCCccccCcccCCHHHHHHHHHHHhhcCCCcceEEeeCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 039743 528 IEWE 531 (531)
Q Consensus 528 ~~~~ 531 (531)
||||
T Consensus 308 ~e~e 311 (311)
T TIGR00884 308 IEWE 311 (311)
T ss_pred ccCC
Confidence 9998
|
This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit |
| >PRK00919 GMP synthase subunit B; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-89 Score=683.14 Aligned_cols=306 Identities=51% Similarity=0.829 Sum_probs=292.7
Q ss_pred ccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 204 WKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 204 w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
.+|.+|+++.++.|++.++ +++++||||||+||+++|+++++++|++++|+|+|+|+++.+|.+.+.+ +|+++ ++++
T Consensus 2 ~~~~~~~~~~~~~l~~~~~-~~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~~~E~e~a~~-~~~~~-i~~~ 78 (307)
T PRK00919 2 VDPEKFIEEAIEEIREEIG-DGKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGETERIKE-TFSDM-LNLR 78 (307)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHH-HHhcc-CCcE
Confidence 4688999999999999998 5999999999999999999999999999999999999999889999887 67777 9999
Q ss_pred EEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
++|+++.|++.++++++|+.+|++|++.|+++|.++|+++| +++|++|||+||++|+ ++ .+++|
T Consensus 79 vvd~~e~fl~~L~~v~npe~rr~~c~r~~~~~~~~~A~~~g------~~~Ia~Gtn~dD~iE~----r~------~iks~ 142 (307)
T PRK00919 79 IVDAKDRFLDALKGVTDPEEKRKIIGETFIRVFEEVAKEIG------AEYLVQGTIAPDWIES----EG------GIKSH 142 (307)
T ss_pred EEECCHHHHHhccCCCChHHhhhHHHHHHHHHHHHHHHHcC------CCEEEECCCCcchhhc----cC------ccccc
Confidence 99999888888888999999999999999999999999988 8999999999999995 33 37999
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHH
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKE 443 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~ 443 (531)
||++++++..++++++||++++|+|||++|+++|||..+++|+|||+||||+||+|++|+|+| +++++||++++++|++
T Consensus 143 ~nv~gl~~~~~~~Ii~PL~~l~K~EVr~la~~lGLp~~~~~r~p~~~pcLa~Ri~g~vt~e~l-~~v~~ae~~~~~~~~~ 221 (307)
T PRK00919 143 HNVGGLPEGMVLKIVEPLRDLYKDEVREVARALGLPEEISERMPFPGPGLAVRIIGEVTEEKL-EIVREANAIVEEEVEK 221 (307)
T ss_pred ccccccChhhcCCcccCchhCcHHHHHHHHHHcCCChhhhCCCCCCCCceeEEeecccCHHHH-HHHHHHHHHHHHHHHh
Confidence 999999988889999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCC
Q 039743 444 AGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSK 523 (531)
Q Consensus 444 ~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k 523 (531)
.|+|+ ||+|+||+|+||||||||+|||+|+|+||+|+|.|||||||+++||++|+++|+||+|||+||||||||||||
T Consensus 222 ~~~~~--~q~~~~~~~~~~~g~~g~~r~~~~~~~~r~~~~~d~mta~~~~~~~~~l~~~~~~i~~~~~~~~~v~~~~~~k 299 (307)
T PRK00919 222 YGPDK--WQYFAALLGVKATGVKGDNRVYGWIVAVRAVESRDGMTADAPELPWEVLQRISSRITSEIPEVARVVYDITPK 299 (307)
T ss_pred cCCcc--cceEEEEcCceeeeecCCccccCceEEEEEEccCCCcccCcccCCHHHHHHHHHHhcccCCCceeeecCCCCC
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccC
Q 039743 524 PPSTIEWE 531 (531)
Q Consensus 524 ~p~~~~~~ 531 (531)
||||||||
T Consensus 300 pp~tie~~ 307 (307)
T PRK00919 300 PPATIEFE 307 (307)
T ss_pred CCCcccCC
Confidence 99999998
|
|
| >cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-87 Score=669.89 Aligned_cols=294 Identities=65% Similarity=1.004 Sum_probs=280.3
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHhhcCCCCcccc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSKLKGVIDPETK 304 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~l~~~~~p~~k 304 (531)
|++||+|||+||+++|+++++++|.+++|+|+|+|+++.+|.+++.+ +|+++++ +++++|+++.|++.+.++.||+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~~~~~E~~~~~~-~~~~~g~i~~~vvd~~e~fl~~l~~v~npe~r 79 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEE-LFSKLLGINLIVVDASERFLSALKGVTDPEEK 79 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCCCChHHHHHHHH-HHHHhCCCcEEEEcCcHHHHHHhcCCCCHHHH
Confidence 68999999999999999999999999999999999999889988887 7777776 999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccC
Q 039743 305 RKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLL 384 (531)
Q Consensus 305 r~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l 384 (531)
|++||+.|++++.+.|+++|. +++|++|||+||++|+.+.... +++||+|||++|+++..++++++||.++
T Consensus 80 r~~~g~~~~~~l~~~A~~~g~-----~~~Ia~Gh~~dD~~Es~~~~~~----~~~IKs~~n~~Gl~a~~~~~vi~PL~~l 150 (295)
T cd01997 80 RKIIGETFIEVFEEEAKKLGL-----AEYLAQGTLYPDVIESGSGKGS----ADTIKSHHNVGGLPEDMKLKLIEPLRDL 150 (295)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCEEEECCcccchhhhcccccc----cccccccccccccchHhhCCcccccccC
Confidence 999999999999999998862 6899999999999998654333 6899999999999988889999999999
Q ss_pred CHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceee
Q 039743 385 FKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVG 464 (531)
Q Consensus 385 ~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~g 464 (531)
+|+|||++|+++|||.+++|++||||||||+|++|++|+|+| +++++||++++++|++.|+|+++||+|++|||+||||
T Consensus 151 ~K~EVR~lar~lGLp~~~~~~~Pfp~p~La~Ri~g~it~e~l-~~~~~ae~~~~~~~~~~~~~~~~~q~~~~~~~~~~vg 229 (295)
T cd01997 151 FKDEVRELGRELGLPEEIVERHPFPGPGLAVRILGEVTEEKL-EILREADAIVEEELEKAGLYDKIWQAFAVLLPIKSVG 229 (295)
T ss_pred cHHHHHHHHHHcCCCchhhCCCCCCCCcceeEEecCCCHHHH-HHHHHHHHHHHHHHHhcCcccccceeeEEeeCccccc
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCccc
Q 039743 465 VQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEW 530 (531)
Q Consensus 465 v~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~ 530 (531)
||||+|||+|+++||+|+|.|||||+|+++||++|++|++||+|+|||||||||||||||||||||
T Consensus 230 v~gd~r~y~~~~~~r~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~~~~v~~d~~~kpp~t~e~ 295 (295)
T cd01997 230 VMGDQRTYGYVVALRAVESSDFMTADWARLPYEVLEKISNRITNEVPGVNRVVYDITSKPPATIEW 295 (295)
T ss_pred ccCCccccccEEEEEEEccCCcccCCCccCCHHHHHHHHHHhhccCCCeeeeecCCCCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999
|
It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes. |
| >COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=342.11 Aligned_cols=192 Identities=38% Similarity=0.565 Sum_probs=170.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCC-CEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHHHHhCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLS-ILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEWALSNG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G-~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~~~~~~ 81 (531)
|++|+|+|||+||+++|+|++|++| +++++.|++.+.+++...++||+||||||.|+|+++ .+.....++ .+...+
T Consensus 1 ~~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~-~~~~p~ 79 (198)
T COG0518 1 MRKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIK-DAGVPG 79 (198)
T ss_pred CcEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccchhHHHHHH-HhCCCC
Confidence 4679999999999999999999999 999999999998888778889999999999999987 333233333 333345
Q ss_pred CcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEec-CCccccCCCCCceE-EEEeeccCccccCCCCcEEEEEeCCC
Q 039743 82 VYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVER-SSGIFGNKKVGHHQ-VVWMSHGDEAVVLPDGFEVVARSQQG 159 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~-~~~l~~~~~~~~~~-~v~~~H~~~v~~lp~g~~vla~s~~~ 159 (531)
+||||||||||+||.++||+|.++..+|||+.++++++ .+++|++++.. + .|||||+|.+.+||+||+++|+|++|
T Consensus 80 ~pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G~~~v~~~~~~~~l~~gl~~~--~~~v~~sH~D~v~~lP~g~~vlA~s~~c 157 (198)
T COG0518 80 KPVLGICLGHQLLAKALGGKVERGPKREIGWTPVELTEGDDPLFAGLPDL--FTTVFMSHGDTVVELPEGAVVLASSETC 157 (198)
T ss_pred CCEEEEChhHHHHHHHhCCEEeccCCCccceEEEEEecCccccccCCccc--cCccccchhCccccCCCCCEEEecCCCC
Confidence 56999999999999999999999988999999999984 45799999887 6 59999999999999999999999999
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccccc
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVN 201 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~ 201 (531)
+++||++. +++||+|||||++| +.|.++++||..++|++.
T Consensus 158 p~qa~~~~-~~~~gvQFHpEv~~-~~~~~~l~nf~~~i~~~~ 197 (198)
T COG0518 158 PNQAFRYG-KRAYGVQFHPEVTH-EYGEALLENFAHEICGEE 197 (198)
T ss_pred hhhheecC-CcEEEEeeeeEEeH-HHHHHHHHHhhhhhcccC
Confidence 99999987 89999999999999 899999999998888764
|
|
| >PF00958 GMP_synt_C: GMP synthase C terminal domain domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=295.69 Aligned_cols=93 Identities=67% Similarity=1.035 Sum_probs=84.3
Q ss_pred HHHHHHcCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEE
Q 039743 438 IQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVV 517 (531)
Q Consensus 438 ~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~ 517 (531)
+++|++.|+|+++||+|++|||+||||||||+|+|+|+++||+|+|+|||||+|+++||++|++|++||+|++|||||||
T Consensus 1 ~ee~~~~~l~~~~~Q~~avllpvrsvGV~GD~RtY~~~vvlR~v~s~D~MTa~~~~~p~~~L~~is~~I~n~v~~V~RV~ 80 (93)
T PF00958_consen 1 IEELKKAGLYDKIWQAFAVLLPVRSVGVQGDQRTYGYVVVLRAVESEDFMTADWARLPWELLEEISSRITNEVPGVNRVV 80 (93)
T ss_dssp -HHHHHTTHGGGSSEEEEEEEEEEEEECCTTTCEEEEEEEEEEEEESSSSSEEE-TB-HHHHHHHHHHHHHHSTTEEEEE
T ss_pred CHHHHhcCcccchhhceEEEcCCCcccccCCccceeeeEEEEEeecccccccccccCCHHHHHHHHHHHHHcCCCccEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCccc
Q 039743 518 QDITSKPPSTIEW 530 (531)
Q Consensus 518 ~d~~~k~p~~~~~ 530 (531)
||+|+||||||||
T Consensus 81 yDiT~KPP~TiEw 93 (93)
T PF00958_consen 81 YDITSKPPATIEW 93 (93)
T ss_dssp EE---BTTS-SS-
T ss_pred EeccCCCCCCccC
Confidence 9999999999999
|
The ammonia intermediate does not dissociate into solution during the chemical transformations []. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains [].; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process; PDB: 2VXO_A 2YWC_D 2YWB_D 2DPL_B 3A4I_A 3UOW_B 3TQI_D 1GPM_C. |
| >TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=305.81 Aligned_cols=188 Identities=47% Similarity=0.806 Sum_probs=169.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
|+|||+|++|+.+++++++++|++++++|++.+.+++...++|||||+||+.++++... ..+++.+.+.++|+|||
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~~~~----~~~i~~~~~~~~PilGI 76 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAENA----PRADEKIFELGVPVLGI 76 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCcCCc----hHHHHHHHhCCCCEEEE
Confidence 68999999999999999999999999999987766664445679999999999887642 34566677779999999
Q ss_pred eHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEEEC
Q 039743 88 CYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENR 167 (531)
Q Consensus 88 C~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~~ 167 (531)
|+|||+|+.++||+|.+.+.+++|+..++++..+++|.++++. +.++++|+|.+.++|++++++|++++++++|+++.
T Consensus 77 C~G~Qll~~~lgg~v~~~~~~~~g~~~v~~~~~~~l~~~~~~~--~~~~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~ 154 (188)
T TIGR00888 77 CYGMQLMAKQLGGEVGRAEKREYGKAELEILDEDDLFRGLPDE--STVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHE 154 (188)
T ss_pred CHHHHHHHHhcCceEecCCCccceeEEEEEecCCHhhcCCCCC--cEEEeEccceeecCCCCCEEEEECCCCCeEEEEEC
Confidence 9999999999999999998899999999998888999999887 89999999999999999999999999999999998
Q ss_pred CCcEEEEecCCCCCCCcccchhhhhheecccccc
Q 039743 168 EKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVN 201 (531)
Q Consensus 168 ~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~ 201 (531)
+.++||+|||||+++++.|.+||+||+.+.|+|+
T Consensus 155 ~~~~~g~QfHPE~~~~~~g~~i~~~f~~~~~~~~ 188 (188)
T TIGR00888 155 EKPIYGVQFHPEVTHTEYGNELLENFVYDVCGCE 188 (188)
T ss_pred CCCEEEEeeCCccCCChhhHHHHHHHHHHhhCCC
Confidence 7799999999999998899999999995589874
|
separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit. |
| >cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=295.65 Aligned_cols=181 Identities=52% Similarity=0.899 Sum_probs=162.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
|+|+|+|++|+.++.++|+++|..++++|++.+.++....++||||||||+.++++...+++.+.++ +.++|+|||
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~~~~~~~~~~~----~~~~PilGI 76 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEIF----ELGVPVLGI 76 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcccccccccchhhHHHH----hcCCCEEEE
Confidence 6899999999999999999999999999988765543457899999999999988765455444443 459999999
Q ss_pred eHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEEEC
Q 039743 88 CYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENR 167 (531)
Q Consensus 88 C~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~~ 167 (531)
|+|||+|+.++||+|.+...+++|+..++....+++|+++++. +.++++|++.|..+|++++++|.++++.++|+++.
T Consensus 77 C~G~Qll~~~~gg~v~~~~~~~~G~~~v~~~~~~~l~~~~~~~--~~~~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~ 154 (181)
T cd01742 77 CYGMQLIAKALGGKVERGDKREYGKAEIEIDDSSPLFEGLPDE--QTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANE 154 (181)
T ss_pred cHHHHHHHHhcCCeEEeCCCCcceEEEEEecCCChhhcCCCCc--eEEEcchhhhhhhcCCCcEEEEeCCCCCEEEEEeC
Confidence 9999999999999999998889999999887788999999887 99999999999999999999999999999999998
Q ss_pred CCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 168 EKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 168 ~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+.++||+|||||++.++.|.++|+||+
T Consensus 155 ~~~~~g~QfHPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 155 EKKIYGVQFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred CCcEEEEEcCCccccCcChHHHHHhhC
Confidence 779999999999999889999999994
|
Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >CHL00101 trpG anthranilate synthase component 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=297.50 Aligned_cols=182 Identities=23% Similarity=0.335 Sum_probs=159.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|+|||+|++|+++++++|+++|+++++++.+. +.+++...++|||||+|||+++++.. ....+++. .++++|+|
T Consensus 1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~---~~~~i~~~-~~~~~PiL 76 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSG---ISLDVISS-YAPYIPIL 76 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCc---chHHHHHH-hcCCCcEE
Confidence 399999999999999999999999999999764 55555456799999999999887542 34556654 56799999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v~a 163 (531)
|||+|||+|+.++||+|.+.+.+++|+........+++|.++++. +.++++|+|.|. ++|++++++|++++|.++|
T Consensus 77 GIClG~Qlla~~~Gg~V~~~~~~~~g~~~~~~~~~~~l~~~~~~~--~~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a 154 (190)
T CHL00101 77 GVCLGHQSIGYLFGGKIIKAPKPMHGKTSKIYHNHDDLFQGLPNP--FTATRYHSLIIDPLNLPSPLEITAWTEDGLIMA 154 (190)
T ss_pred EEchhHHHHHHHhCCEEEECCCcccCceeeEeeCCcHhhccCCCc--eEEEcchhheeecccCCCceEEEEEcCCCcEEE
Confidence 999999999999999999998878887765555666899999888 999999999994 6999999999999999999
Q ss_pred EEECCCc-EEEEecCCCCCCCcccchhhhhhe
Q 039743 164 VENREKR-LFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 164 i~~~~~~-i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+++.+++ +||+|||||+.+++.|.+||+||+
T Consensus 155 ~~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~ 186 (190)
T CHL00101 155 CRHKKYKMLRGIQFHPESLLTTHGQQILRNFL 186 (190)
T ss_pred EEeCCCCCEEEEEeCCccCCChhHHHHHHHHH
Confidence 9998888 999999999998899999999997
|
|
| >PRK07765 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=300.45 Aligned_cols=203 Identities=23% Similarity=0.328 Sum_probs=174.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh-hccc--cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL-DDIT--AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~-~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~i 82 (531)
++|+|+|+++++++.+.++++++|+++++++++.+. ++.. ..++|||||+|||+++.+. .....+++.+.++++
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~---~~~~~~i~~~~~~~~ 77 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERA---GASIDMVRACAAAGT 77 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhc---chHHHHHHHHHhCCC
Confidence 369999999999999999999999999999987642 2221 3579999999999875432 334578888888899
Q ss_pred cEEEeeHHHHHHHHHcCCEEeecCcccceeee-EEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCC
Q 039743 83 YVLGICYGLQLMVQKLDGVVKVGEKQEYGRME-ILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQG 159 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~-v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~ 159 (531)
||||||+|||+|+.++||+|.+.+.++.|... +.+. .+.+|.++++. +.++++|+|.+. ++|++++++|++++|
T Consensus 78 PiLGIC~G~Qlla~a~GG~v~~~~~~~~g~~~~v~~~-~~~~~~~~~~~--~~v~~~H~~~v~~~~lp~~~~vla~s~~~ 154 (214)
T PRK07765 78 PLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVHHT-GVGVLAGLPDP--FTATRYHSLTILPETLPAELEVTARTDSG 154 (214)
T ss_pred CEEEEccCHHHHHHHhCCEEeeCCCCccCceeEEEEC-CCccccCCCCc--cEEEecchheEecccCCCceEEEEEcCCC
Confidence 99999999999999999999998877777744 4444 34588888877 999999999984 899999999999999
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhh
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVK 215 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~ 215 (531)
.++|+++.++++||+|||||..++..|.++++||+ .+|++.++|++..++++.+.
T Consensus 155 ~vqa~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~-~~~~~~~~~~~~~~~~~~~~ 209 (214)
T PRK07765 155 VIMAVRHRELPIHGVQFHPESVLTEGGHRMLANWL-TVCGWAPDEALVRRLENEVA 209 (214)
T ss_pred cEEEEEeCCCCEEEEeeCCCcccCcchHHHHHHHH-HHhccccchhhcccccchhh
Confidence 99999998888999999999998899999999998 89999999999988766543
|
|
| >PRK05637 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=296.01 Aligned_cols=185 Identities=23% Similarity=0.399 Sum_probs=154.9
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
|.+|++||++++|++++++.|+++|+++++++++.+.+++...++|||||||||+++++... ..++++.+. .++||
T Consensus 1 ~~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~~---~~~li~~~~-~~~Pi 76 (208)
T PRK05637 1 MTHVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAGN---MMALIDRTL-GQIPL 76 (208)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhhH---HHHHHHHHh-CCCCE
Confidence 46799999999999999999999999999999988777776678999999999999876532 245666544 47999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccceee-eEEEec---CCccccCCCCC----------ceEEEEeeccCccccCCCCc
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRM-EILVER---SSGIFGNKKVG----------HHQVVWMSHGDEAVVLPDGF 150 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G~~-~v~~~~---~~~l~~~~~~~----------~~~~v~~~H~~~v~~lp~g~ 150 (531)
||||+|||+|+.++||+|.+.. +++|.. .+.++. ++++|.+++.. ..+.||++|+|.|..+|+++
T Consensus 77 LGIClG~Qlla~alGG~V~~~~-~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~lp~~~ 155 (208)
T PRK05637 77 LGICLGFQALLEHHGGKVEPCG-PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGM 155 (208)
T ss_pred EEEcHHHHHHHHHcCCeeccCC-cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhcCCCCe
Confidence 9999999999999999999765 456654 355543 45788877510 12889999999999999999
Q ss_pred EEEEEeCC--C-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 151 EVVARSQQ--G-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 151 ~vla~s~~--~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+++|++++ | .++++++.++++||+|||||+.+|+.|.+||+||+
T Consensus 156 ~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~nfl 202 (208)
T PRK05637 156 ESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSRCV 202 (208)
T ss_pred EEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHHHH
Confidence 99999754 4 45777888899999999999999999999999998
|
|
| >PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=293.58 Aligned_cols=182 Identities=21% Similarity=0.400 Sum_probs=158.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC-CChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGT-CSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~-~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|+|||.+++|++++++.|+++|..+.+++.+ .+.+++...++|||||||||+++++... ...+++. .+.++|+|
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~---~~~~i~~-~~~~~PvL 76 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGI---SMEVIRY-FAGKIPIF 76 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCC---chHHHHH-hcCCCCEE
Confidence 38999999999999999999999999999987 4555555568999999999999887542 3344543 34689999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCcc--ccCCCCcEEEEEeCCCcEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~g~~vla~s~~~~v~a 163 (531)
|||+|||+|+.++||+|.+.+..++|+.......++++|++++.. +.++++|++.+ ..+|++++++|++++|.++|
T Consensus 77 GIClG~Qlla~~lGg~V~~~~~~~~G~~~~i~~~~~~lf~~~~~~--~~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a 154 (195)
T PRK07649 77 GVCLGHQSIAQVFGGEVVRAERLMHGKTSLMHHDGKTIFSDIPNP--FTATRYHSLIVKKETLPDCLEVTSWTEEGEIMA 154 (195)
T ss_pred EEcHHHHHHHHHcCCEEeeCCCcccCCeEEEEECCChhhcCCCCC--CEEEEechheEecccCCCCeEEEEEcCCCcEEE
Confidence 999999999999999999988888887653333556899999988 99999999998 37999999999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+++.++++||+|||||+.+++.|.+||+||+
T Consensus 155 ~~~~~~~i~gvQFHPE~~~t~~g~~il~nfl 185 (195)
T PRK07649 155 IRHKTLPIEGVQFHPESIMTSHGKELLQNFI 185 (195)
T ss_pred EEECCCCEEEEEECCCCCCCccHHHHHHHHH
Confidence 9998888999999999999999999999998
|
|
| >PRK08007 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=289.90 Aligned_cols=181 Identities=27% Similarity=0.397 Sum_probs=158.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
||++||..++|++++++.|+++|+++.+++.+. +.+++...++|||||||||+++.+.. ....+++. .++++|+|
T Consensus 1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~---~~~~~~~~-~~~~~PiL 76 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAG---ISLDVIRH-YAGRLPIL 76 (187)
T ss_pred CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCC---ccHHHHHH-hcCCCCEE
Confidence 389999999999999999999999999999874 66666556899999999999987653 34566665 45689999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceee-eEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRM-EILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAVA 162 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~-~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v~ 162 (531)
|||+|||+|+.++||+|.+...+++|.. .+.. ..+.+|++++.. +.++++|++.|. ++|++++++|.+++|.++
T Consensus 77 GIClG~Q~la~a~Gg~v~~~~~~~~g~~~~v~~-~~~~l~~~~~~~--~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~ 153 (187)
T PRK08007 77 GVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITH-NGEGVFRGLANP--LTVTRYHSLVVEPDSLPACFEVTAWSETREIM 153 (187)
T ss_pred EECHHHHHHHHHcCCEEEeCCCcccCCceEEEE-CCCCcccCCCCC--cEEEEcchhEEccCCCCCCeEEEEEeCCCcEE
Confidence 9999999999999999999988888754 4543 345689999877 899999999984 799999999999999999
Q ss_pred EEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 163 AVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|+++.+.++||+|||||+..+..|.+||+||+
T Consensus 154 a~~~~~~~i~GvQfHPE~~~t~~G~~il~nFl 185 (187)
T PRK08007 154 GIRHRQWDLEGVQFHPESILSEQGHQLLANFL 185 (187)
T ss_pred EEEeCCCCEEEEEeCCcccCCcchHHHHHHHh
Confidence 99999899999999999998999999999997
|
|
| >PRK05670 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=291.86 Aligned_cols=185 Identities=25% Similarity=0.421 Sum_probs=157.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|+|||++++|++.++++|+++|++++++|++. +.+++...++|||||+|||+++++.. ....+++. .+.++|+|
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~---~~~~~l~~-~~~~~PvL 76 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAG---ISLELIRE-FAGKVPIL 76 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcc---hHHHHHHH-hcCCCCEE
Confidence 499999999999999999999999999999874 44444445699999999999886542 23456665 35689999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v~a 163 (531)
|||+|||+|+.++||+|.+.+..++|+........+++|++++.. +.++++|++.|. ++|++++++|.+++|.++|
T Consensus 77 GIClG~Qlla~alGg~v~~~~~~~~g~~~~v~~~~~~l~~~~~~~--~~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a 154 (189)
T PRK05670 77 GVCLGHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGSGIFAGLPNP--FTVTRYHSLVVDRESLPDCLEVTAWTDDGEIMG 154 (189)
T ss_pred EECHHHHHHHHHhCCEEEecCCcccCceeEEEeCCCchhccCCCC--cEEEcchhheeccccCCCceEEEEEeCCCcEEE
Confidence 999999999999999999987777776543335567899999887 899999999995 5999999999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+++.++++||+|||||+..++.|.+||+||+ +.|
T Consensus 155 ~~~~~~~~~gvQfHPE~~~~~~g~~i~~~F~-~~~ 188 (189)
T PRK05670 155 VRHKELPIYGVQFHPESILTEHGHKLLENFL-ELA 188 (189)
T ss_pred EEECCCCEEEEeeCCCcCCCcchHHHHHHHH-Hhh
Confidence 9998889999999999998889999999997 544
|
|
| >PRK06774 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=288.71 Aligned_cols=182 Identities=23% Similarity=0.371 Sum_probs=159.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC-CChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGT-CSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~-~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|++||+.++|++++++.|+++|..+.+++.+ .+.+++...++|||||+|||+++++... ...+++. .++++|||
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~---~~~~i~~-~~~~~PiL 76 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGI---SLAVIRH-FADKLPIL 76 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCC---chHHHHH-hcCCCCEE
Confidence 38999999999999999999999999999986 4667776668999999999999977643 3455654 35699999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCcc--ccCCCCcEEEEEeCCC----
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPDGFEVVARSQQG---- 159 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~g~~vla~s~~~---- 159 (531)
|||+|||+|+.++||+|.+.+..++|+..+.....+++|++++.. +.++++|++.+ .++|++++++|+++++
T Consensus 77 GIC~G~Qlla~~~GG~v~~~~~~~~G~~~~~~~~~~~lf~~l~~~--~~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~ 154 (191)
T PRK06774 77 GVCLGHQALGQAFGARVVRARQVMHGKTSAICHSGQGVFRGLNQP--LTVTRYHSLVIAADSLPGCFELTAWSERGGEMD 154 (191)
T ss_pred EECHHHHHHHHHhCCEEEeCCcceecceEEEEecCchhhcCCCCC--cEEEEeCcceeeccCCCCCeEEEEEeCCCCCcc
Confidence 999999999999999999988788999988777777899999877 89999999998 5789999999998753
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
.++++++++.++||+|||||+.+++.|.+||+||+
T Consensus 155 ~i~~~~~~~~~i~GvQfHPE~~~~~~G~~i~~nf~ 189 (191)
T PRK06774 155 EIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFL 189 (191)
T ss_pred eEEEEEeCCCCEEEEEECCCcCCCccHHHHHHHHh
Confidence 46778888789999999999988899999999997
|
|
| >TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=284.98 Aligned_cols=181 Identities=25% Similarity=0.357 Sum_probs=157.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|+|||++++|++++++.++++|..+.++|.+. +.+++...++|||||||||+++.+.. ...++++.+ ++++|||
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~---~~~~~i~~~-~~~~PvL 76 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAG---ISLEAIRHF-AGKLPIL 76 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcc---hhHHHHHHh-ccCCCEE
Confidence 389999999999999999999999999999764 56666556799999999999886532 246777776 6799999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccce-eeeEEEecCCccccCCCCCceEEEEeeccCcc--ccCCCCcEEEEEeCCC-cE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYG-RMEILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPDGFEVVARSQQG-AV 161 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G-~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~g~~vla~s~~~-~v 161 (531)
|||+|||+|+.++||+|.+.+..++| +..++.+. +.++.++++. +.++++|++.| ..+|++++++|.++++ .+
T Consensus 77 GIC~G~Qll~~~~GG~v~~~~~~~~g~~~~v~~~~-~~~~~~l~~~--~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v 153 (188)
T TIGR00566 77 GVCLGHQAMGQAFGGDVVRANTVMHGKTSEIEHNG-AGIFRGLFNP--LTATRYHSLVVEPETLPTCFPVTAWEEENIEI 153 (188)
T ss_pred EECHHHHHHHHHcCCEEeeCCCccccceEEEEECC-CccccCCCCC--cEEEEcccceEecccCCCceEEEEEcCCCCEE
Confidence 99999999999999999998777677 66666543 4578888776 89999999998 5899999999999875 99
Q ss_pred EEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+|+++.+.++||+|||||+.+++.|.+||+||+
T Consensus 154 ~a~~~~~~~i~gvQfHPE~~~t~~G~~il~nfl 186 (188)
T TIGR00566 154 MAIRHRDLPLEGVQFHPESILSEQGHQLLANFL 186 (188)
T ss_pred EEEEeCCCCEEEEEeCCCccCCcccHHHHHHHH
Confidence 999999889999999999999999999999997
|
This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase. |
| >PRK00758 GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=284.56 Aligned_cols=181 Identities=38% Similarity=0.659 Sum_probs=157.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCC-CEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNP-RVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~-dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|+|+|+|++|++++.++++++|..+.+++++.+.+++ .++ |||||||||. . + +.. .+.+...+.++|||
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l--~~~~dgivi~Gg~~-~-~----~~~-~~~~~l~~~~~Pil 71 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEI--KAFEDGLILSGGPD-I-E----RAG-NCPEYLKELDVPIL 71 (184)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHH--hhcCCEEEECCCCC-h-h----hcc-ccHHHHHhCCCCEE
Confidence 38999999999999999999999999999987766655 445 9999999993 1 1 111 12223335689999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE 165 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~ 165 (531)
|||+|||+|+.++||+|.+.+.+++|+..+.+++++++|.++++. +.++++|+|.+.++|++++++|.+++|.++|++
T Consensus 72 GIC~G~Q~L~~a~Gg~v~~~~~~~~g~~~i~~~~~~~l~~~~~~~--~~~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~ 149 (184)
T PRK00758 72 GICLGHQLIAKAFGGEVGRGEYGEYALVEVEILDEDDILKGLPPE--IRVWASHADEVKELPDGFEILARSDICEVEAMK 149 (184)
T ss_pred EEeHHHHHHHHhcCcEEecCCCceeeeEEEEEcCCChhhhCCCCC--cEEEeehhhhhhhCCCCCEEEEECCCCCEEEEE
Confidence 999999999999999999998889999999988888899999888 999999999999999999999999999999999
Q ss_pred ECCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 166 NREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 166 ~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
+.++++||+|||||+++++.|.+||+||+ ++|+
T Consensus 150 ~~~~~~~g~QfHPE~~~~~~g~~l~~~f~-~~~~ 182 (184)
T PRK00758 150 HKEKPIYGVQFHPEVAHTEYGEEIFKNFL-EICG 182 (184)
T ss_pred ECCCCEEEEEcCCccCCCchHHHHHHHHH-HHHc
Confidence 88788999999999999889999999998 6553
|
|
| >PRK08857 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=281.88 Aligned_cols=181 Identities=22% Similarity=0.355 Sum_probs=155.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC-CChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGT-CSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~-~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|++||.+++|++++++.++++|+++++++++ .+.+++...++|++|++|||+++++... ...+++. .++++|+|
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~---~~~~i~~-~~~~~PiL 76 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGI---SLQAIEH-FAGKLPIL 76 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcc---hHHHHHH-hcCCCCEE
Confidence 39999999999999999999999999999987 3555444567999999999999876532 3456665 46799999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeee-EEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeC--C--
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRME-ILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQ--Q-- 158 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~-v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~--~-- 158 (531)
|||+|||+|+.++||+|.+.+.+++|+.. ++. .++++|.+++.. +.++++|++.|. ++|++++++|+++ +
T Consensus 77 GIClG~Qlia~a~Gg~v~~~~~~~~G~~~~~~~-~~~~l~~~~~~~--~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~ 153 (193)
T PRK08857 77 GVCLGHQAIAQVFGGQVVRARQVMHGKTSPIRH-TGRSVFKGLNNP--LTVTRYHSLVVKNDTLPECFELTAWTELEDGS 153 (193)
T ss_pred EEcHHHHHHHHHhCCEEEeCCCceeCceEEEEE-CCCcccccCCCc--cEEEEccEEEEEcCCCCCCeEEEEEecCcCCC
Confidence 99999999999999999999888888843 333 456789998887 999999999985 8999999999886 3
Q ss_pred -CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 159 -GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 159 -~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+.++++++++.++||+|||||+.+++.|.+||+||+
T Consensus 154 ~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nFl 190 (193)
T PRK08857 154 MDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANFL 190 (193)
T ss_pred cceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHHH
Confidence 368999999999999999999999999999999997
|
|
| >cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=279.26 Aligned_cols=180 Identities=24% Similarity=0.375 Sum_probs=154.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhcc-ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDI-TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~-~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLG 86 (531)
|+|+|+|++|++.+++.++++|+++++++++...+.+ ...++||||++|||+++++.. ....+.+. .++++|+||
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~---~~~~i~~~-~~~~~PvlG 76 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAG---ISLEIIRA-LAGKVPILG 76 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccch---hHHHHHHH-HhcCCCEEE
Confidence 6899999999999999999999999999998765432 246799999999999876553 23344444 456899999
Q ss_pred eeHHHHHHHHHcCCEEeecCccccee-eeEEEecCCccccCCCCCceEEEEeeccCccccCCCC--cEEEEEeCCCcEEE
Q 039743 87 ICYGLQLMVQKLDGVVKVGEKQEYGR-MEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDG--FEVVARSQQGAVAA 163 (531)
Q Consensus 87 IC~G~Qlla~~~GG~v~~~~~~e~G~-~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g--~~vla~s~~~~v~a 163 (531)
||+|||+|+.++||+|.+.+..+.|. +.++.. .+++|+++++. +.++++|+|.|..+|.+ ++++|.+++|.++|
T Consensus 77 IC~G~Qlla~~~Gg~v~~~~~~~~g~~~~v~~~-~~~~~~~~~~~--~~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a 153 (184)
T cd01743 77 VCLGHQAIAEAFGGKVVRAPEPMHGKTSEIHHD-GSGLFKGLPQP--FTVGRYHSLVVDPDPLPDLLEVTASTEDGVIMA 153 (184)
T ss_pred ECHhHHHHHHHhCCEEEeCCCCCcCceeEEEEC-CCccccCCCCC--cEEEeCcEEEEecCCCCceEEEEEeCCCCeEEE
Confidence 99999999999999999987766664 455543 56788999888 89999999999888887 99999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+++.++++||+|||||+.+++.|.+||+||+
T Consensus 154 ~~~~~~~i~gvQfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 154 LRHRDLPIYGVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred EEeCCCCEEEEeeCCCcCCCcchHHHHHhhC
Confidence 9998888999999999998899999999995
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese |
| >PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=320.23 Aligned_cols=231 Identities=19% Similarity=0.283 Sum_probs=184.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC----hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCS----LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~----~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
|.+|+|||+++||++++++.|+++|..+.+++.+.+ .+++...++|+|||||||+++++.. ....++++. ..
T Consensus 1 ~~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~---~~~~i~~~~-~~ 76 (531)
T PRK09522 1 MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAG---CMPELLTRL-RG 76 (531)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCC---CCHHHHHHH-hc
Confidence 357999999999999999999999999988876543 3444345789999999999987653 345666653 45
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCc
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGA 160 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~ 160 (531)
++||||||+|||+|+.++||+|.+....++|+.........++|.+++.. +.++++|++.+..+|++++++|.+ ++.
T Consensus 77 ~iPILGIClG~QlLa~a~GG~V~~~~~~~~G~~~~i~~~~~~lf~~~~~~--~~v~~~Hs~~v~~lP~~l~vlA~s-d~~ 153 (531)
T PRK09522 77 KLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNP--LPVARYHSLVGSNIPAGLTINAHF-NGM 153 (531)
T ss_pred CCCEEEEcHHHHHHHHhcCCEEEeCCceeeeeEEEEeecCCccccCCCCC--cEEEEehheecccCCCCcEEEEec-CCC
Confidence 89999999999999999999999987777887654333455789999888 999999999999999999999974 677
Q ss_pred EEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc--cccccccccchhhhhhhhhhccccCc---cceeeccCCCC
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC--GVNAGWKLENVLDEEVKCIKDTVGLE---DHVICALSGGV 235 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~--~~~~~w~~~~~~~~~~~~i~~~v~~~---~kvvvalSGGv 235 (531)
++|+++.+.++||+|||||+.+|+.|.+||+||+ +.| +++++|+|.++++++.+. + .+... .-+-.-++|-+
T Consensus 154 v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl-~~~~~~~~~~~~~~~~l~~~~~~-~-~Lt~eea~~~~~~il~g~~ 230 (531)
T PRK09522 154 VMAVRHDADRVCGFQFHPESILTTQGARLLEQTL-AWAQQKLEPTNTLQPILEKLYQA-Q-TLSQQESHQLFSAVVRGEL 230 (531)
T ss_pred EEEEEECCCCEEEEEecCccccCcchHHHHHHHH-HHHhhcCCCCCCHHHHHHHhhcC-C-CCCHHHHHHHHHHHHcCCC
Confidence 9999998899999999999999999999999998 554 779999998877665432 1 12111 12334567877
Q ss_pred CHHHHHHHHH
Q 039743 236 DSTVAATLVH 245 (531)
Q Consensus 236 DS~v~a~l~~ 245 (531)
+..-.++++.
T Consensus 231 ~~~qi~AfL~ 240 (531)
T PRK09522 231 KPEQLAAALV 240 (531)
T ss_pred CHHHHHHHHH
Confidence 7766666664
|
|
| >PLN02335 anthranilate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=287.47 Aligned_cols=187 Identities=20% Similarity=0.324 Sum_probs=156.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
++|+|||++++|+++++++|+++|+++++++++. +.+++...++|||||+|||+++++.+.. ...++. ...++|+
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~---~~~~~~-~~~~~Pi 94 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGIS---LQTVLE-LGPLVPL 94 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccch---HHHHHH-hCCCCCE
Confidence 5799999999999999999999999999999863 5555545679999999999999876421 233332 3457999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcc-cc-eeeeEEEec--CCccccCCCCCceEEEEeeccCccc--cCCCC-cEEEEEeC
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQ-EY-GRMEILVER--SSGIFGNKKVGHHQVVWMSHGDEAV--VLPDG-FEVVARSQ 157 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~-e~-G~~~v~~~~--~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g-~~vla~s~ 157 (531)
||||+|||+|+.++||+|.+.+.. ++ ++..++.+. .+++|++++.. +.++++|++.|. ++|++ ++++|+++
T Consensus 95 LGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~--~~v~~~H~~~v~~~~lp~~~~~v~a~~~ 172 (222)
T PLN02335 95 FGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNP--FTAGRYHSLVIEKDTFPSDELEVTAWTE 172 (222)
T ss_pred EEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCCChhhhCCCCC--CEEEechhheEecccCCCCceEEEEEcC
Confidence 999999999999999999987643 44 455566553 35799999987 899999999984 67887 99999999
Q ss_pred CCcEEEEEECCCc-EEEEecCCCCCCCcccchhhhhheecccc
Q 039743 158 QGAVAAVENREKR-LFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 158 ~~~v~ai~~~~~~-i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
++.++++++.+.+ +||+|||||+..++.|..||+||+ +.|.
T Consensus 173 ~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~-~~~~ 214 (222)
T PLN02335 173 DGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFI-KIIE 214 (222)
T ss_pred CCCEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHH-HHHH
Confidence 9999999998777 999999999999999999999998 5553
|
|
| >COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=269.11 Aligned_cols=184 Identities=24% Similarity=0.419 Sum_probs=162.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCC-CChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGT-CSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~-~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
|.+||+||.-++|+.++++.++++|.++.++..+ .+.+.+...++|+||||.||+++.+. ....++++.+ ..++|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~---G~~~~~i~~~-~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDA---GISLELIRRF-AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHc---chHHHHHHHh-cCCCC
Confidence 4579999999999999999999999999998876 34444556789999999999987643 3356777776 66799
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc--CCCCcEEEEEeCC-Cc
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV--LPDGFEVVARSQQ-GA 160 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~--lp~g~~vla~s~~-~~ 160 (531)
+||||+|||.|+++|||+|.+.+.+-+|........++.+|+++++. +.+..+|+-.+.. +|+.++++|++++ +.
T Consensus 77 iLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i~h~g~~iF~glp~~--f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~ 154 (191)
T COG0512 77 ILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITHDGSGLFAGLPNP--FTVTRYHSLVVDPETLPEELEVTAESEDGGV 154 (191)
T ss_pred EEEECccHHHHHHHhCCEEEecCCCcCCeeeeeecCCcccccCCCCC--CEEEeeEEEEecCCCCCCceEEEEEeCCCCE
Confidence 99999999999999999999999889999884334457899999999 9999999988876 9999999999966 49
Q ss_pred EEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++|++|++.++||+|||||.-.|+.|.+|++||+
T Consensus 155 IMai~h~~~pi~gvQFHPESilT~~G~~il~Nfl 188 (191)
T COG0512 155 IMAVRHKKLPIYGVQFHPESILTEYGHRILENFL 188 (191)
T ss_pred EEEEeeCCCCEEEEecCCccccccchHHHHHHHH
Confidence 9999999999999999999999999999999998
|
|
| >PRK06895 putative anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=271.12 Aligned_cols=181 Identities=23% Similarity=0.346 Sum_probs=152.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
++|+|||++++|++.++++|+++|.++.+++.+. +.++ ...+||||++|||+++. ..++ ..++++. .+.++|+
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~--l~~~d~iIi~gGp~~~~--~~~~-~~~~i~~-~~~~~Pi 75 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDE--VENFSHILISPGPDVPR--AYPQ-LFAMLER-YHQHKSI 75 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhH--hccCCEEEECCCCCChH--HhhH-HHHHHHH-hcCCCCE
Confidence 4799999999999999999999999999988653 3333 35789999999998642 1222 2345554 4669999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccce-eeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcE
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYG-RMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAV 161 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G-~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v 161 (531)
||||+|||+|+.++||+|.+.+..+.| +..+....++++|+++++. +.++++|++.+. ++|+++.++|.++++.+
T Consensus 76 LGIClG~Qlla~~~Gg~V~~~~~~~~g~~~~v~~~~~~~l~~~~~~~--~~v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i 153 (190)
T PRK06895 76 LGVCLGHQTLCEFFGGELYNLNNVRHGQQRPLKVRSNSPLFDGLPEE--FNIGLYHSWAVSEENFPTPLEITAVCDENVV 153 (190)
T ss_pred EEEcHHHHHHHHHhCCeEeecCCCccCceEEEEECCCChhhhcCCCc--eEEEcchhheecccccCCCeEEEEECCCCcE
Confidence 999999999999999999887555454 5667766778999999988 999999999985 68999999999999999
Q ss_pred EEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+|+++.++++||+|||||+..++.|.+|++||+
T Consensus 154 ~a~~~~~~pi~GvQFHPE~~~~~~g~~il~nf~ 186 (190)
T PRK06895 154 MAMQHKTLPIYGVQFHPESYISEFGEQILRNWL 186 (190)
T ss_pred EEEEECCCCEEEEEeCCCcCCCcchHHHHHHHH
Confidence 999998888999999999988999999999997
|
|
| >PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=276.70 Aligned_cols=182 Identities=27% Similarity=0.466 Sum_probs=157.3
Q ss_pred EEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhcc--ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEE
Q 039743 9 LILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDI--TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 9 ~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~--~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLG 86 (531)
||+|+|++|++++.++++++|+++++++++.+.+.. ...++|||||+|||+++++ ......+++.+.++++|+||
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~~PilG 77 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD---IEGLIELIREARERKIPILG 77 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTTSEEEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc---ccccccccccccccceEEEE
Confidence 689999999999999999999999999988755443 2678999999999999887 12234678888889999999
Q ss_pred eeHHHHHHHHHcCCEEeecC-cccceeeeEEEe-cCCccccCCCCCceEEEEeeccCcccc---CCCCcEEEEEeCC-Cc
Q 039743 87 ICYGLQLMVQKLDGVVKVGE-KQEYGRMEILVE-RSSGIFGNKKVGHHQVVWMSHGDEAVV---LPDGFEVVARSQQ-GA 160 (531)
Q Consensus 87 IC~G~Qlla~~~GG~v~~~~-~~e~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H~~~v~~---lp~g~~vla~s~~-~~ 160 (531)
||+|||+|+.++||+|.+.+ .++.|+...... ..++++.+.++. +.++++|+|.|.. +|++++++|++++ |.
T Consensus 78 IC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~ 155 (192)
T PF00117_consen 78 ICLGHQILAHALGGKVVPSPEKPHHGGNIPISETPEDPLFYGLPES--FKAYQYHSDAVNPDDLLPEGFEVLASSSDGCP 155 (192)
T ss_dssp ETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEEEHGGGTTSTSE--EEEEEEECEEEEEGHHHHTTEEEEEEETTTTE
T ss_pred EeehhhhhHHhcCCcccccccccccccccccccccccccccccccc--cccccccceeeecccccccccccccccccccc
Confidence 99999999999999999876 566666554333 335899999888 9999999999998 9999999999966 48
Q ss_pred EEEEEECCCcEEEEecCCCCCCCcccchhhhhhee
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLF 195 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~ 195 (531)
++++.+.++++||+|||||++++..|..+++||+.
T Consensus 156 ~~~~~~~~~~i~g~QfHPE~~~~~~~~~~l~nf~~ 190 (192)
T PF00117_consen 156 IQAIRHKDNPIYGVQFHPEFSSSPGGPQLLKNFFL 190 (192)
T ss_dssp EEEEEECTTSEEEESSBTTSTTSTTHHHHHHHHHH
T ss_pred cccccccccEEEEEecCCcCCCCCCcchhhhheeE
Confidence 99999988889999999999999999999999984
|
The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B .... |
| >TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=302.70 Aligned_cols=190 Identities=26% Similarity=0.371 Sum_probs=163.7
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
..++|+|||+|++|.++++++|+++|+++.+++++...+.+...++|||||+|||+++++.. ...+++.+.+.++|
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~d~~----~~~~I~~~~~~~iP 590 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPADFD----VAGTIDAALARGLP 590 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCchhcc----cHHHHHHHHHCCCC
Confidence 34689999999999999999999999999999876543333346799999999999887542 24567777788999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccce-eeeEEEecCCccccCCCCCceEEEEeeccCcc--ccCCCCcEEEEEeCCCc
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYG-RMEILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPDGFEVVARSQQGA 160 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G-~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~g~~vla~s~~~~ 160 (531)
+||||+|||+|+.++||+|.+.+.+++| +..+.+..++++|.+++.. +.++++|++.+ ..+|++++++|.++++.
T Consensus 591 vLGICLG~QlLa~a~GG~V~~~~~p~~G~~~~V~~~~~~~Lf~~lp~~--~~v~~~HS~~~~~~~LP~~~~vlA~s~d~~ 668 (717)
T TIGR01815 591 VFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIRVLGPDALFAGLPER--LTVGRYHSLFARRDRLPAELTVTAESADGL 668 (717)
T ss_pred EEEECHHHHHHhhhhCCEEEECCCCeeCcceEEEECCCChhhhcCCCC--CEEEEECCCCcccccCCCCeEEEEEeCCCc
Confidence 9999999999999999999999888899 5668777777899999988 99999999876 67999999999999999
Q ss_pred EEEEEECCCcEEEEecCCCCCCCc---ccchhhhhheecccc
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSP---EGMETLRYFLFDVCG 199 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~---~g~~i~~~F~~~~~~ 199 (531)
++||++.+.++||+|||||+.+|. .|.+||+||+..+|+
T Consensus 669 v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 669 IMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLAA 710 (717)
T ss_pred EEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHhh
Confidence 999999888999999999997664 479999999855553
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate. |
| >COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=259.87 Aligned_cols=247 Identities=22% Similarity=0.342 Sum_probs=197.3
Q ss_pred hhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH
Q 039743 211 DEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ 290 (531)
Q Consensus 211 ~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~ 290 (531)
..+++.++++++..++++||||||+|||++|+++.+++|+++.|+|+|++.++..+.+.+.. +|+++||+|+++++...
T Consensus 4 ~~Kl~~l~~~ik~~~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~-~A~~iGi~H~~i~~~~~ 82 (269)
T COG1606 4 LSKLERLKKAIKEKKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKN-IAKEIGIRHEFIKMNRM 82 (269)
T ss_pred HHHHHHHHHHHhhcCeEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHH-HHHHhCCcceeeehhhc
Confidence 45567777777766799999999999999999999999999999999999999999999987 89999999999999753
Q ss_pred HHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCC
Q 039743 291 FLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLP 370 (531)
Q Consensus 291 f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~ 370 (531)
- . .-..||+++|+.|.+.++..+.+.|.+.| ++.++.|||++|+.+ ++| |+.
T Consensus 83 ~-~--~~~~n~~~rCY~CK~~v~~~l~~~a~~~G------yd~V~dGtNasDl~~----~RP---------------G~r 134 (269)
T COG1606 83 D-P--EFKENPENRCYLCKRAVYSTLVEEAEKRG------YDVVADGTNASDLFD----YRP---------------GLR 134 (269)
T ss_pred c-h--hhccCCCCcchHHHHHHHHHHHHHHHHcC------CCEEEeCCcHHHhcC----CCc---------------chh
Confidence 2 1 12247888888887778899999999888 899999999999977 677 566
Q ss_pred cccccceeccccc--CCHHHHHHHHHHcCCCccccccCCCCCCCcccccc-C-CCCcchHHHHHhhhhHHHHHHHHHcCc
Q 039743 371 KDMKLKLIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVL-G-DVTEGNSLDILRQVDEIFIQSIKEAGL 446 (531)
Q Consensus 371 ~~~~~~ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~-g-~vt~~~l~~~~~~~d~~~~~~l~~~~~ 446 (531)
+..+..+-+||.+ ++|.|||++|+++|+|. |.+| +.+||++|++ | ++|.|++ ..+.+|+.+ +++.+
T Consensus 135 A~kE~gi~sPl~e~gitk~eIre~a~~lgl~~---~~kp-~~aCl~sr~p~g~ei~~e~l-~kv~~ae~~----l~~l~- 204 (269)
T COG1606 135 ALKELGIRSPLAEFGITKKEIREIAKSLGLPT---WDKP-SMACLASRIPYGEEITVEDL-KKVEEAEEF----LRELG- 204 (269)
T ss_pred hHHhcCCCChHHHhCCcHHHHHHHHHHcCCCc---ccCc-cccccccccCCCccccHHHH-HHHHHHHHH----HHHhh-
Confidence 6677789999999 89999999999999995 8889 9999999998 5 4799999 999999998 55554
Q ss_pred ccccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCccccccccc-HHHHHHHHHHHHcCCC--CcccEEEecCCC
Q 039743 447 YDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFE-HKFLDDVARKICNTVR--GVNRVVQDITSK 523 (531)
Q Consensus 447 ~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~-~~~l~~~~~~i~~~~~--~v~rv~~d~~~k 523 (531)
+. ... | |.|++++++.. .+-+ .+++++ ..+|...+. |...|+.|++..
T Consensus 205 ~~----~ir---------v----r~~~~~A~iEv-----------~~ee~~k~~~~-~~~i~~~lk~~Gf~~VtldLegY 255 (269)
T COG1606 205 VR----QIR---------V----RSEDNLAVIEV-----------GPEEPEKLLNE-VEEIDDKLKKVGFRKVTLDLEGY 255 (269)
T ss_pred hc----eee---------e----eecCceeEEec-----------CccCHHHHhhh-HHHHHHHHHHhccceEEechhhh
Confidence 22 222 2 88888888754 1112 233332 222333333 899999998765
Q ss_pred CC
Q 039743 524 PP 525 (531)
Q Consensus 524 ~p 525 (531)
.-
T Consensus 256 rs 257 (269)
T COG1606 256 RS 257 (269)
T ss_pred hc
Confidence 43
|
|
| >PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=294.93 Aligned_cols=227 Identities=22% Similarity=0.368 Sum_probs=176.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCE-EEEE-eCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSIL-SLCL-SGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~-~~v~-~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
+|+|||.+++|++++++.|+++|.. +.++ |++.+.+++...++|||||+|||+++++... ..++++. .+.++||
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~---~~~li~~-~~~~~Pv 76 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGI---SVEVIRH-FSGKVPI 76 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCc---cHHHHHH-hhcCCCE
Confidence 4899999999999999999999986 5555 5566677765567999999999999876542 3456665 3568999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcEE
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAVA 162 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v~ 162 (531)
||||+|||+|+.++||+|.+....++|+........+++|++++.. +.++++|++.|. .+|++++++|++++|.++
T Consensus 77 LGIClG~QlLa~a~Gg~V~~~~~~~~G~~~~v~~~~~~lf~~~~~~--~~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~ 154 (534)
T PRK14607 77 LGVCLGHQAIGYAFGGKIVHAKRILHGKTSPIDHNGKGLFRGIPNP--TVATRYHSLVVEEASLPECLEVTAKSDDGEIM 154 (534)
T ss_pred EEEcHHHHHHHHHcCCeEecCCccccCCceeEEECCCcchhcCCCC--cEEeeccchheecccCCCCeEEEEEcCCCCEE
Confidence 9999999999999999999998888887654444566789999887 899999999984 699999999999999999
Q ss_pred EEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCc--c-ceeeccCCCCCHHH
Q 039743 163 AVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLE--D-HVICALSGGVDSTV 239 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~--~-kvvvalSGGvDS~v 239 (531)
|++++++++||+|||||+.+++.|.+||+||+ +.|. ..+++..+++++.+- + .+..+ . =+---++|-++-.-
T Consensus 155 a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl-~~~~--~~~~~~~~i~~l~~g-~-~Lt~~ea~~~~~~il~g~~~~~q 229 (534)
T PRK14607 155 GIRHKEHPIFGVQFHPESILTEEGKRILKNFL-NYQR--EEIDIKSYLKKLVEG-E-DLSFEEAEDVMEDITDGNATDAQ 229 (534)
T ss_pred EEEECCCCEEEEEeCCCCCCChhHHHHHHHHH-HHhh--ccCCHHHHHHHhccC-C-CCCHHHHHHHHHHHHcCCCCHHH
Confidence 99998889999999999999999999999998 6664 344555555443321 0 11101 1 12224567776655
Q ss_pred HHHHH
Q 039743 240 AATLV 244 (531)
Q Consensus 240 ~a~l~ 244 (531)
+++++
T Consensus 230 ~~AfL 234 (534)
T PRK14607 230 IAGFL 234 (534)
T ss_pred HHHHH
Confidence 55555
|
|
| >PRK13566 anthranilate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.2e-32 Score=297.61 Aligned_cols=186 Identities=23% Similarity=0.330 Sum_probs=164.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||+|+++.+++++++++.|+++++++++.+.+.+...++|||||+|||+++.+.. ...+++.+.++++|||
T Consensus 527 ~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d~~----~~~lI~~a~~~~iPIL 602 (720)
T PRK13566 527 KRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSDFD----CKATIDAALARNLPIF 602 (720)
T ss_pred CEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhhCC----cHHHHHHHHHCCCcEE
Confidence 589999999999999999999999999999988765555456899999999999875432 4578888888899999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccce-eeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEeCCCcEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYG-RMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQGAVA 162 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G-~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~~v~ 162 (531)
|||+|||+|+.++||+|.+.+.++.| +..+++..++++|+++++. +.++++|++.+. .+|++++++|.+++|.|+
T Consensus 603 GIClG~QlLa~alGG~V~~~~~~~~G~~~~V~v~~~~~Lf~~lp~~--~~v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ 680 (720)
T PRK13566 603 GVCLGLQAIVEAFGGELGQLAYPMHGKPSRIRVRGPGRLFSGLPEE--FTVGRYHSLFADPETLPDELLVTAETEDGVIM 680 (720)
T ss_pred EEehhHHHHHHHcCCEEEECCCCccCCceEEEECCCCchhhcCCCC--CEEEEecceeEeeccCCCceEEEEEeCCCcEE
Confidence 99999999999999999998777776 4668888778999999988 999999998774 599999999999999999
Q ss_pred EEEECCCcEEEEecCCCCCCC---cccchhhhhheeccc
Q 039743 163 AVENREKRLFGLQYHPEVTHS---PEGMETLRYFLFDVC 198 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~---~~g~~i~~~F~~~~~ 198 (531)
|+++.+.++||+|||||+..| ..|.+||+||+ +.|
T Consensus 681 ai~~~~~pi~GVQFHPE~i~t~~~~~G~~ii~nfl-~~~ 718 (720)
T PRK13566 681 AIEHKTLPVAAVQFHPESIMTLGGDVGLRIIENVV-RLL 718 (720)
T ss_pred EEEECCCCEEEEeccCeeCCcCCchhHHHHHHHHH-HHh
Confidence 999988899999999999776 46999999998 555
|
|
| >cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=251.05 Aligned_cols=173 Identities=21% Similarity=0.321 Sum_probs=139.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEe
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGI 87 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGI 87 (531)
|+|+|||+|| +++++++++|++++++|++.+.+++...++|||||+|||+++.+. ....++++.+.++++|+|||
T Consensus 1 i~i~d~g~~~--~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~~---~~~~~~~~~~~~~~~PvlGI 75 (178)
T cd01744 1 VVVIDFGVKH--NILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALL---DEAIKTVRKLLGKKIPIFGI 75 (178)
T ss_pred CEEEecCcHH--HHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhHh---HHHHHHHHHHHhCCCCEEEE
Confidence 6899999998 489999999999999999877665545679999999999865432 23456788888889999999
Q ss_pred eHHHHHHHHHcCCEEeecCccccee-eeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEe-CCCcEEE
Q 039743 88 CYGLQLMVQKLDGVVKVGEKQEYGR-MEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARS-QQGAVAA 163 (531)
Q Consensus 88 C~G~Qlla~~~GG~v~~~~~~e~G~-~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s-~~~~v~a 163 (531)
|+|||+|+.++||+|.+.+.++.|. +++..... ... +.+.++|++.+. .+|++++++|++ +++.++|
T Consensus 76 C~G~Q~l~~~~Gg~v~~~~~~~~g~~~~v~~~~~-------~~~--~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a 146 (178)
T cd01744 76 CLGHQLLALALGAKTYKMKFGHRGSNHPVKDLIT-------GRV--YITSQNHGYAVDPDSLPGGLEVTHVNLNDGTVEG 146 (178)
T ss_pred CHHHHHHHHHcCCceecCCCCCCCCceeeEEcCC-------CCc--EEEEcCceEEEcccccCCceEEEEEECCCCcEEE
Confidence 9999999999999999865444443 22322111 122 678889999985 799999999997 5789999
Q ss_pred EEECCCcEEEEecCCCCCCCc-ccchhhhhhe
Q 039743 164 VENREKRLFGLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
+++++.++||+|||||+.+++ ....+|++|+
T Consensus 147 ~~~~~~~i~GvQfHPE~~~~~~~~~~lf~~f~ 178 (178)
T cd01744 147 IRHKDLPVFSVQFHPEASPGPHDTEYLFDEFL 178 (178)
T ss_pred EEECCCCeEEEeeCCCCCCCCCCchHhHhhhC
Confidence 999889999999999998765 5678999985
|
This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is |
| >cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS) | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=250.56 Aligned_cols=176 Identities=24% Similarity=0.355 Sum_probs=141.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCC---CCCCCChHHHHHHHHhCCCcE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHS---PDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~---~~~~~~~~~l~~~~~~~~iPv 84 (531)
|+|||||++|.++++++|+++|+++++++... ++ .++|+|||+||...... ..... ..+.++.+.++++||
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~---~l--~~~d~iiipG~~~~~~~~~~~~~~~-~~~~i~~~~~~~~pi 74 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPE---EI--LSADKLILPGVGAFGDAMANLRERG-LIEALKEAIASGKPF 74 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChH---Hh--ccCCEEEECCCCcHHHHHHHHHHcC-hHHHHHHHHHCCCcE
Confidence 68999999999999999999999999987432 22 46899999876432110 00011 245667777789999
Q ss_pred EEeeHHHHHHHHH------------cCCEEeecCc------ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccC
Q 039743 85 LGICYGLQLMVQK------------LDGVVKVGEK------QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVL 146 (531)
Q Consensus 85 LGIC~G~Qlla~~------------~GG~v~~~~~------~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~l 146 (531)
||||+|||+|+++ ++|+|.+.+. +++|++.+....++++|+++++. +.++++|++.+..
T Consensus 75 lGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~--~~v~~~Hs~~v~~- 151 (198)
T cd01748 75 LGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESPLFKGIPDG--SYFYFVHSYYAPP- 151 (198)
T ss_pred EEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEECCCChhhhCCCCC--CeEEEEeEEEEec-
Confidence 9999999999998 8899998654 48999999988888999999988 8999999999864
Q ss_pred CCCcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 147 PDGFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 147 p~g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|+.+.++|.++++ .++++. .++++||+|||||++. +.|.++++||+
T Consensus 152 ~~~~~~la~s~~~~~~~~~~-~~~~i~GvQFHPE~~~-~~g~~~~~nf~ 198 (198)
T cd01748 152 DDPDYILATTDYGGKFPAAV-EKDNIFGTQFHPEKSG-KAGLKLLKNFL 198 (198)
T ss_pred CCcceEEEEecCCCeEEEEE-EcCCEEEEECCCcccc-HhHHHHHHhhC
Confidence 5567889988765 455654 5678999999999995 69999999995
|
Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=252.00 Aligned_cols=182 Identities=24% Similarity=0.325 Sum_probs=145.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC-CCC--CChHHHHHHHHhCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP-DAP--AFPAGFLEWALSNG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~-~~~--~~~~~l~~~~~~~~ 81 (531)
|+||+|||||+++.++++++|+++|.++++... .+.+++ .++|||||||+..+..+. ... .+...+++.+.+.+
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~-~~~~~l--~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVT-ADPDAV--AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAG 77 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEE-CCHHHh--cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCC
Confidence 357999999999999999999999994433222 233444 678999999986542211 011 23446677766789
Q ss_pred CcEEEeeHHHHHHHHH------------cCCEEeec-------CcccceeeeEEEecCCccccCCCCCceEEEEeeccCc
Q 039743 82 VYVLGICYGLQLMVQK------------LDGVVKVG-------EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDE 142 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~------------~GG~v~~~-------~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~ 142 (531)
+|+||||+|||+|+.+ ++|+|.+. ..+++||+.+++.+++++|+++++. +.++++|+|.
T Consensus 78 ~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~~~~lf~~~~~~--~~v~~~Hs~~ 155 (209)
T PRK13146 78 RPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTRDHPLFAGIPDG--ARFYFVHSYY 155 (209)
T ss_pred CcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCCCChhccCCCCC--CEEEEEeEEE
Confidence 9999999999999999 89999886 3468999999998888999999988 8999999999
Q ss_pred cccCCCCcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 143 AVVLPDGFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 143 v~~lp~g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+..+| +..++|+++.+ .++++.. ++++||+|||||++ +..|.++++||+
T Consensus 156 v~~~~-~~~~la~s~~~~~~~a~~~-~~~i~GvQFHPE~s-~~~G~~ll~nfl 205 (209)
T PRK13146 156 AQPAN-PADVVAWTDYGGPFTAAVA-RDNLFATQFHPEKS-QDAGLALLRNFL 205 (209)
T ss_pred EEcCC-CCcEEEEEcCCCEEEEEEe-cCCEEEEEcCCccc-HHHHHHHHHHHH
Confidence 87555 67899988775 5777764 58899999999998 479999999997
|
|
| >PRK05665 amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=248.51 Aligned_cols=173 Identities=20% Similarity=0.284 Sum_probs=140.4
Q ss_pred EEEEEeCCC----------CcHHHHHHHHHHCCCEEEEEeCCCChhcc--ccCCCCEEEEcCCCCCCCCCCCCCCh--HH
Q 039743 7 LVLILDYGS----------QYTHLITRRIRSLSILSLCLSGTCSLDDI--TAKNPRVVILSGGPHSVHSPDAPAFP--AG 72 (531)
Q Consensus 7 ~I~IlD~G~----------~~~~~i~r~l~~~G~~~~v~~~~~~~~~~--~~~~~dgiIlsGGp~s~~~~~~~~~~--~~ 72 (531)
||+||..|. +|...+.+.+.+.+...++..++....++ ...++||+|++|||.+++++ .||+. .+
T Consensus 4 ki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~-~pwi~~l~~ 82 (240)
T PRK05665 4 RICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGT-DPWIQTLKT 82 (240)
T ss_pred EEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCcccc-chHHHHHHH
Confidence 599996664 34555777777777543332222211111 14679999999999999875 57765 36
Q ss_pred HHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecCc-ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcE
Q 039743 73 FLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEK-QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFE 151 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~-~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~ 151 (531)
+++.+.++++|+||||+|||+|++++||+|.+++. .+.|...++++...+++..+++. +.++++|+|.|..||+|++
T Consensus 83 ~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~~~~~~~~~~~~~~~~~~--~~~~~~H~D~V~~LP~ga~ 160 (240)
T PRK05665 83 YLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIHRYQLAAHAPWMSPAVTE--LTLLISHQDQVTALPEGAT 160 (240)
T ss_pred HHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceEEEEecCCCccccCCCCc--eEEEEEcCCeeeeCCCCcE
Confidence 77888888999999999999999999999999764 47899999888878899988888 9999999999999999999
Q ss_pred EEEEeCCCcEEEEEECCCcEEEEecCCCCCCC
Q 039743 152 VVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 152 vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
++|+|+.|++++++. ++++||+|||||+++.
T Consensus 161 ~La~s~~~~~q~~~~-~~~~~g~QfHPE~~~~ 191 (240)
T PRK05665 161 VIASSDFCPFAAYHI-GDQVLCFQGHPEFVHD 191 (240)
T ss_pred EEEeCCCCcEEEEEe-CCCEEEEecCCcCcHH
Confidence 999999999999985 5789999999999974
|
|
| >TIGR00268 conserved hypothetical protein TIGR00268 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=250.36 Aligned_cols=242 Identities=19% Similarity=0.318 Sum_probs=184.6
Q ss_pred hhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 215 ~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
+.+++.+.+.++++||||||+||+++++++++. |.+++++|++++..+..|.+.+.+ +|+.+|+++++++.++.. ..
T Consensus 3 ~~l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~-g~~v~av~~~~~~~~~~e~~~a~~-~a~~lgi~~~ii~~~~~~-~~ 79 (252)
T TIGR00268 3 ENLRNFLKEFKKVLIAYSGGVDSSLLAAVCSDA-GTEVLAITVVSPSISPRELEDAII-IAKEIGVNHEFVKIDKMI-NP 79 (252)
T ss_pred HHHHHHHHhcCCEEEEecCcHHHHHHHHHHHHh-CCCEEEEEecCCCCCHHHHHHHHH-HHHHcCCCEEEEEcHHHH-HH
Confidence 455666666789999999999999999999998 999999999999888778888776 899999999999997532 22
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
+. .+++++|++|.+.+++.+.+.|++.| +++|++||+.+|+.+. +|| +....+
T Consensus 80 ~~--~n~~~~c~~ck~~~~~~l~~~A~~~g------~~~I~~G~n~dD~~~~----rpg---------------~~a~~~ 132 (252)
T TIGR00268 80 FR--ANVEERCYFCKKMVLSILVKEAEKRG------YDVVVDGTNADDLFDH----RPG---------------YRAVKE 132 (252)
T ss_pred HH--hCCCcccchhhHHHHHHHHHHHHHcC------CCEEEECCCCcccccc----cHH---------------HHHHHH
Confidence 22 25666676777778888888999888 8999999999999773 342 111123
Q ss_pred cceeccccc--CCHHHHHHHHHHcCCCccccccCCCCCCCcccccc-C-CCCcchHHHHHhhhhHHHHHHHHHcCccccc
Q 039743 375 LKLIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVL-G-DVTEGNSLDILRQVDEIFIQSIKEAGLYDLI 450 (531)
Q Consensus 375 ~~ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~-g-~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~ 450 (531)
..+++||.+ ++|+|||++|+++|+|. |..| +.+||++|++ | ++|+++| ..++++|++ |+..|+.+
T Consensus 133 ~~~~~PL~~~~l~K~eIr~la~~~gl~~---~~~p-s~~Cl~sr~~~g~~it~~~l-~~v~~~E~~----l~~~g~~~-- 201 (252)
T TIGR00268 133 FNGVSPWAEFGITKKEIREIAKSLGISF---PDKP-SEACLASRFPFGREIDEEKL-KMVDEAEEV----LRNAGVGQ-- 201 (252)
T ss_pred cCCCCcchhcCCCHHHHHHHHHHcCCCc---cCCC-CCCceEeecCCCCcCCHHHH-HHHHHHHHH----HHHcCCCe--
Confidence 346699987 79999999999999994 8888 7899999998 5 7999999 999999999 66677532
Q ss_pred ccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCC--CcccEEEecCCCC
Q 039743 451 WQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVR--GVNRVVQDITSKP 524 (531)
Q Consensus 451 ~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~--~v~rv~~d~~~k~ 524 (531)
+.| |.++.++.|..- . .++. .++.. ...|.+.++ |...|..|++...
T Consensus 202 ---~rv-------------r~~~~~a~ie~~-~-----~~~~----~~~~~-~~~i~~~~~~~gf~~v~ldl~g~~ 250 (252)
T TIGR00268 202 ---VRV-------------RNYDNLAVIEVP-E-----DELS----KLLNE-AEEVRDKFKDIGFRKVLIDLEGYR 250 (252)
T ss_pred ---EEE-------------EecCCeEEEEEC-H-----HHHH----HHHhh-HHHHHHHHHHcCCCeEEEccCCcc
Confidence 444 778888877641 1 1111 12222 234445555 9999999998764
|
The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server. |
| >PRK09065 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=250.87 Aligned_cols=181 Identities=25% Similarity=0.349 Sum_probs=146.9
Q ss_pred CCEEEEEeCC----------CCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCCh--HH
Q 039743 5 PELVLILDYG----------SQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFP--AG 72 (531)
Q Consensus 5 ~~~I~IlD~G----------~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~--~~ 72 (531)
|++|+||..+ +.|.+.+.+.++..|....++............++|||||+|||.+++++ .+|+. .+
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~dgvvi~Gg~~~~~d~-~~w~~~~~~ 79 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAPDDFAGVIITGSWAMVTDR-LDWSERTAD 79 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCCCCCChhhcCEEEEeCCCcccCCC-chhHHHHHH
Confidence 4568888443 34566677777778888887655432111124679999999999999875 57764 46
Q ss_pred HHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecCc-ccceeeeEEEec---CCccccCCCCCceEEEEeeccCccccCCC
Q 039743 73 FLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEK-QEYGRMEILVER---SSGIFGNKKVGHHQVVWMSHGDEAVVLPD 148 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~-~e~G~~~v~~~~---~~~l~~~~~~~~~~~v~~~H~~~v~~lp~ 148 (531)
+++.+.++++||||||+|||+|+.++||+|.+.+. .++|+..++++. .+++|+++++. +.++++|+|.|.++|+
T Consensus 80 ~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~g~e~G~~~v~~~~~~~~~~l~~~~~~~--~~v~~~H~d~v~~lp~ 157 (237)
T PRK09065 80 WLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQ--FPAHLTHLQSVLRLPP 157 (237)
T ss_pred HHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCCCCccceEEEEEccccccChhhhcCCcc--CcEeeehhhhhhhCCC
Confidence 78888888999999999999999999999998754 789999999875 34799999888 9999999999999999
Q ss_pred CcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 149 GFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 149 g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|++++|++++|.++|+++. +++||+|||||++. .++++|+
T Consensus 158 ~~~~la~s~~~~iqa~~~~-~~i~gvQfHPE~~~-----~~~~~~~ 197 (237)
T PRK09065 158 GAVVLARSAQDPHQAFRYG-PHAWGVQFHPEFTA-----HIMRAYL 197 (237)
T ss_pred CCEEEEcCCCCCeeEEEeC-CCEEEEEeCCcCCH-----HHHHHHH
Confidence 9999999999999999975 57999999999986 3666665
|
|
| >PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=245.70 Aligned_cols=175 Identities=23% Similarity=0.354 Sum_probs=136.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCCh-HHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFP-AGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~-~~l~~~~~~~~iPv 84 (531)
++|+|||||++|.++++++|+++|++++++... +++ .++|+|||||+..+..+-. .+. ..+++.+.+.++||
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~---~~~--~~~d~iIlPG~G~~~~~~~--~l~~~~l~~~i~~~~~Pi 73 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDP---DVI--LAADKLFLPGVGTAQAAMD--QLRERELIDLIKACTQPV 73 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCH---HHh--CCCCEEEECCCCchHHHHH--HHHHcChHHHHHHcCCCE
Confidence 369999999999999999999999999988532 333 4679999988544321110 111 12445555568999
Q ss_pred EEeeHHHHHHHHHcC------------CEEeec-----CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCC
Q 039743 85 LGICYGLQLMVQKLD------------GVVKVG-----EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 85 LGIC~G~Qlla~~~G------------G~v~~~-----~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp 147 (531)
||||+|||+|+.+++ |+|.+. +.+++||+.+++.+++++++++++. +.+|++|++. +|
T Consensus 74 lGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~~~~~l~~~l~~~--~~v~~~Hs~~---lp 148 (196)
T PRK13170 74 LGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQAGHPLFQGIEDG--SYFYFVHSYA---MP 148 (196)
T ss_pred EEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeCCCChhhhCCCcC--CEEEEECeee---cC
Confidence 999999999999972 466653 3568999999988888899999988 9999999986 47
Q ss_pred CCcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 148 DGFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 148 ~g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++..++|+++.+ .++++. .++++||+|||||++. +.|.++|+||+
T Consensus 149 ~~~~~la~s~~~~~~~~~~-~~~~i~G~QFHPE~~~-~~G~~~l~nfl 194 (196)
T PRK13170 149 VNEYTIAQCNYGEPFSAAI-QKDNFFGVQFHPERSG-AAGAQLLKNFL 194 (196)
T ss_pred CCCcEEEEecCCCeEEEEE-EcCCEEEEECCCCCcc-cccHHHHHHHh
Confidence 778889988764 444443 4678999999999996 79999999997
|
|
| >PRK06490 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=246.93 Aligned_cols=178 Identities=21% Similarity=0.278 Sum_probs=146.5
Q ss_pred CCEEEEE-eCCCCcHHHHHHHHHHCCCEEEEEeCCCChhcc-ccCCCCEEEEcCCCCCCCCCCCCCCh--HHHHHHHHhC
Q 039743 5 PELVLIL-DYGSQYTHLITRRIRSLSILSLCLSGTCSLDDI-TAKNPRVVILSGGPHSVHSPDAPAFP--AGFLEWALSN 80 (531)
Q Consensus 5 ~~~I~Il-D~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~-~~~~~dgiIlsGGp~s~~~~~~~~~~--~~l~~~~~~~ 80 (531)
+++|+|| ++++++..++++.+++.|..+.++......... ...++||+||+|||.++++.. +|+. .++++.+.++
T Consensus 7 ~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~-~wi~~~~~~i~~~~~~ 85 (239)
T PRK06490 7 KRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPD-DFIRREIDWISVPLKE 85 (239)
T ss_pred CceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCc-hHHHHHHHHHHHHHHC
Confidence 3567777 889999999999999999999987543211101 146799999999999998864 6655 3677777888
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCc--ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCC
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEK--QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQ 158 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~--~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~ 158 (531)
++|+||||+|||+|++++||+|.+++. .+.|+..++++..++++..++ ..++++|+|. ..||++++++|++++
T Consensus 86 ~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~~~i~~~~~~~~~~~~~----~~~~~~H~d~-~~lP~~~~~LA~s~~ 160 (239)
T PRK06490 86 NKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYYPLRPTEAGRALMHWP----EMVYHWHREG-FDLPAGAELLATGDD 160 (239)
T ss_pred CCCEEEECHhHHHHHHHcCCEeecCCCCCCccceEEeEECCCcccccCCC----CEEEEECCcc-ccCCCCCEEEEeCCC
Confidence 999999999999999999999999764 489999999987776665553 4688999999 789999999999999
Q ss_pred CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 159 GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 159 ~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|+++||+. ++++||+|||||++. +++++|+
T Consensus 161 ~~~qa~~~-~~~v~g~QfHPE~~~-----~~~~~~i 190 (239)
T PRK06490 161 FPNQAFRY-GDNAWGLQFHPEVTR-----AMMHRWV 190 (239)
T ss_pred CCeEEEEe-CCCEEEEeeCccCCH-----HHHHHHH
Confidence 99999997 458999999999985 4777775
|
|
| >PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=251.12 Aligned_cols=198 Identities=24% Similarity=0.298 Sum_probs=145.5
Q ss_pred CCCCC--CEEEEEe-C----CC--C-cHHHHHHHHHHCCCEEEEEeCCCC-hhccc--cCCCCEEEEcCCCCCC----CC
Q 039743 1 MENKP--ELVLILD-Y----GS--Q-YTHLITRRIRSLSILSLCLSGTCS-LDDIT--AKNPRVVILSGGPHSV----HS 63 (531)
Q Consensus 1 ~~~~~--~~I~IlD-~----G~--~-~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~--~~~~dgiIlsGGp~s~----~~ 63 (531)
|+|.| +.|+|.- . +. + ..+.+.+++..+|..+.++|.... .+.+. ...+|||||+||+.++ |.
T Consensus 1 ~~~~m~~P~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg 80 (254)
T PRK11366 1 MENIMNNPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYG 80 (254)
T ss_pred CCCCCCCCEEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcC
Confidence 67755 5688862 1 10 1 124578899999999999986432 12221 4568999999998766 32
Q ss_pred C--CCCC-------ChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecC----c----c---------cc-eeeeEE
Q 039743 64 P--DAPA-------FPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGE----K----Q---------EY-GRMEIL 116 (531)
Q Consensus 64 ~--~~~~-------~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~----~----~---------e~-G~~~v~ 116 (531)
+ ..++ ++.++++.+.++++||||||+|||+|+.++||+|.+.. . . .+ +.+.++
T Consensus 81 ~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~ 160 (254)
T PRK11366 81 ENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQ 160 (254)
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEE
Confidence 2 1122 22478888889999999999999999999999999751 0 0 01 245677
Q ss_pred EecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEEECCCc-EEEEecCCCCCCCccc--chhhhhh
Q 039743 117 VERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKR-LFGLQYHPEVTHSPEG--METLRYF 193 (531)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~~~~~-i~gvQFHPE~~~~~~g--~~i~~~F 193 (531)
+++++.+...++....+.|+.+|++.|..+|++++++|++++|.++||++.+++ ++|+|||||+..+..+ ..||++|
T Consensus 161 ~~~~s~l~~i~~~~~~~~Vns~H~q~V~~l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~f 240 (254)
T PRK11366 161 VEEGGLLSALLPECSNFWVNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGF 240 (254)
T ss_pred ECCCCcHHHhcCCCceEEeehHHHHHHhhcccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHH
Confidence 766654433332212278999999999999999999999999999999998777 5999999999987777 7899999
Q ss_pred eecccc
Q 039743 194 LFDVCG 199 (531)
Q Consensus 194 ~~~~~~ 199 (531)
+ +.|+
T Consensus 241 v-~~~~ 245 (254)
T PRK11366 241 I-TACQ 245 (254)
T ss_pred H-HHHH
Confidence 8 6664
|
|
| >PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=245.15 Aligned_cols=176 Identities=22% Similarity=0.359 Sum_probs=138.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC---CCCCChHHHHHHHHhCCCcE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP---DAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~---~~~~~~~~l~~~~~~~~iPv 84 (531)
|+|||||++|.+++++++|.+|++++++. +.+++ .++|+||+|||+....+. ....+. +.++.+.+.++|+
T Consensus 2 i~vid~g~gn~~~~~~~l~~~g~~v~~~~---~~~~l--~~~d~lilpG~g~~~~~~~~l~~~~~~-~~i~~~~~~~~Pv 75 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKRLGVEAVVSS---DPEEI--AGADKVILPGVGAFGQAMRSLRESGLD-EALKEHVEKKQPV 75 (199)
T ss_pred EEEEeCCCChHHHHHHHHHHCCCcEEEEc---ChHHh--ccCCEEEECCCCCHHHHHHHHHHCChH-HHHHHHHHCCCCE
Confidence 99999999999999999999999998873 23333 568999998875421110 011222 3445556779999
Q ss_pred EEeeHHHHHHHHH-----------cCCEEeecCc-----ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCC
Q 039743 85 LGICYGLQLMVQK-----------LDGVVKVGEK-----QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPD 148 (531)
Q Consensus 85 LGIC~G~Qlla~~-----------~GG~v~~~~~-----~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~ 148 (531)
||||+|||+|+.+ +|++|.+.+. +++||+.+++.+++++|+++++. +.++++|++.+...+
T Consensus 76 lGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~--~~~~~~Hs~~v~~~~- 152 (199)
T PRK13181 76 LGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPLKESPLFKGIEEG--SYFYFVHSYYVPCED- 152 (199)
T ss_pred EEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccCCCChhHcCCCCC--CEEEEeCeeEeccCC-
Confidence 9999999999999 7899988643 58999999888788999999988 899999999876555
Q ss_pred CcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 149 GFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 149 g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
.+.++|+++.+ .+++.. .++++||+|||||+++ +.|.++|+||+
T Consensus 153 ~~~~lA~s~~~~~~~~~~-~~~~i~GvQFHPE~~~-~~g~~ll~nfl 197 (199)
T PRK13181 153 PEDVLATTEYGVPFCSAV-AKDNIYAVQFHPEKSG-KAGLKLLKNFA 197 (199)
T ss_pred cccEEEEEcCCCEEEEEE-ECCCEEEEECCCccCC-HHHHHHHHHHH
Confidence 45689998764 343333 3578999999999984 79999999997
|
|
| >PRK12564 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=259.84 Aligned_cols=175 Identities=23% Similarity=0.349 Sum_probs=142.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+|+|||.++ +++|+|+++|+++.++|++.+.+++...++|||||||||+++.+. ....++++.+.++++|+|
T Consensus 178 ~~I~viD~G~k~--nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~~~---~~~~~~i~~~~~~~~Pil 252 (360)
T PRK12564 178 YKVVAIDFGVKR--NILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAAL---DYAIEMIRELLEKKIPIF 252 (360)
T ss_pred CEEEEEeCCcHH--HHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChHHH---HHHHHHHHHHHHcCCeEE
Confidence 479999999765 699999999999999999987777655579999999999865321 223467788887899999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceee-eEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEe-CCCcE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRM-EILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARS-QQGAV 161 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~-~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s-~~~~v 161 (531)
|||+|||+|+.++||++.+.+..+.|.. ++.... -... +.++++|++.|. ++|++++++|.+ +++.+
T Consensus 253 GIClG~QlLa~a~Gg~v~kl~~gh~G~~~pv~~~~-------~~~~--~its~~H~~~V~~~~lp~~l~v~a~~~~Dg~i 323 (360)
T PRK12564 253 GICLGHQLLALALGAKTYKMKFGHRGANHPVKDLE-------TGKV--EITSQNHGFAVDEDSLPANLEVTHVNLNDGTV 323 (360)
T ss_pred EECHHHHHHHHHhCCcEeccCCCccCCceeeEECC-------CCcE--EEEecCcccEEcccccCCceEEEEEeCCCCcE
Confidence 9999999999999999998764444432 222211 0122 667889999995 899999999998 68999
Q ss_pred EEEEECCCcEEEEecCCCCCCCc-ccchhhhhhe
Q 039743 162 AAVENREKRLFGLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
+|+++++.++||+|||||..+++ ++..+|++|+
T Consensus 324 egi~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~ 357 (360)
T PRK12564 324 EGLRHKDLPAFSVQYHPEASPGPHDSAYLFDEFV 357 (360)
T ss_pred EEEEECCCCEEEEEeCCcCCCCCCCHHHHHHHHH
Confidence 99999999999999999998766 4788999997
|
|
| >PRK07053 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=242.66 Aligned_cols=180 Identities=22% Similarity=0.348 Sum_probs=146.6
Q ss_pred CCEEEEEeCC-CCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCC-CCCChH--HHHHHHHh
Q 039743 5 PELVLILDYG-SQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPD-APAFPA--GFLEWALS 79 (531)
Q Consensus 5 ~~~I~IlD~G-~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~-~~~~~~--~l~~~~~~ 79 (531)
|++|+||-.- .....++.++|++.|..+.+++.... .......++||||++|||.+++++. .||+.. ++++.+.+
T Consensus 2 m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~ 81 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLA 81 (234)
T ss_pred CceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHH
Confidence 5679999432 23356799999999999988876432 1111246799999999999999875 477653 67777788
Q ss_pred CCCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC---CccccCCCCCceEEEEeeccCccccCCCCcEEEEEe
Q 039743 80 NGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS---SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARS 156 (531)
Q Consensus 80 ~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~---~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s 156 (531)
.++|+||||+|||+|+.++||+|.+.+.+|+|+.++++++. +++ .+++.. +.++++|+|.+ .+|+|++++|+|
T Consensus 82 ~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~i~~t~~g~~~pl-~~~~~~--~~~~~~H~d~~-~lP~ga~~La~s 157 (234)
T PRK07053 82 AGLPTLGICLGAQLIARALGARVYPGGQKEIGWAPLTLTDAGRASPL-RHLGAG--TPVLHWHGDTF-DLPEGATLLAST 157 (234)
T ss_pred CCCCEEEECccHHHHHHHcCCcEecCCCCeEeEEEEEEeccccCChh-hcCCCc--ceEEEEeCCEE-ecCCCCEEEEcC
Confidence 89999999999999999999999998888999999998754 344 456666 89999999996 799999999999
Q ss_pred CCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 157 QQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 157 ~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+.|++++|+. ++++||+|||||++.. +++.|+
T Consensus 158 ~~~~~qaf~~-g~~~~g~QfHpE~~~~-----~~~~w~ 189 (234)
T PRK07053 158 PACRHQAFAW-GNHVLALQFHPEARED-----RFEAWL 189 (234)
T ss_pred CCCCeeEEEe-CCCEEEEeeCccCCHH-----HHHHHH
Confidence 9999999996 6789999999999974 666665
|
|
| >PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-30 Score=246.02 Aligned_cols=180 Identities=24% Similarity=0.377 Sum_probs=146.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC---CCCCChHHHHHHHHhCCCc
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP---DAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~---~~~~~~~~l~~~~~~~~iP 83 (531)
+|+|||||++|...++++|+++|+++.++..+ +++ .++||||||||.....+. ..+.. .+.++.+.++++|
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~---~~l--~~~d~iiipG~~~~~~~~~~~~~~~~-~~~i~~~~~~~~p 74 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDP---EEI--LAADGVILPGVGAFPDAMANLRERGL-DEVIKEAVASGKP 74 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCH---HHh--ccCCEEEECCCCchHHHHHHHHHcCh-HHHHHHHHHCCCc
Confidence 48999999999999999999999999997532 333 578999999874421110 00112 3455666778999
Q ss_pred EEEeeHHHHHHHHH------------cCCEEeecC------cccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc
Q 039743 84 VLGICYGLQLMVQK------------LDGVVKVGE------KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV 145 (531)
Q Consensus 84 vLGIC~G~Qlla~~------------~GG~v~~~~------~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~ 145 (531)
+||||+|+|+|+++ +||+|.+.+ .+++|++.++++.+++++++++.. +.++++|++.+ .
T Consensus 75 vlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~~~~l~~~l~~~--~~v~~~Hs~~v-~ 151 (205)
T PRK13141 75 LLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKKESPLLKGIPDG--AYVYFVHSYYA-D 151 (205)
T ss_pred EEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeCCCChhhhCCCCC--CEEEEECeeEe-c
Confidence 99999999999997 679998864 458899999988888999999888 89999999987 5
Q ss_pred CCCCcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 146 LPDGFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 146 lp~g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+|+++.++|+++++ .++++.. ++++||+|||||++. +.|.++|+||+ +.|
T Consensus 152 ~~~~~~v~a~~~~~~~~~a~~~-~~~i~GvQfHPE~~~-~~g~~l~~~fl-~~~ 202 (205)
T PRK13141 152 PCDEEYVAATTDYGVEFPAAVG-KDNVFGAQFHPEKSG-DVGLKILKNFV-EMV 202 (205)
T ss_pred cCCcCeEEEEEeCCcEEEEEEe-cCCEEEEeCCCccch-HHHHHHHHHHH-HHh
Confidence 78889999988766 7888875 678999999999986 68999999998 666
|
|
| >COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=231.98 Aligned_cols=179 Identities=23% Similarity=0.359 Sum_probs=136.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCC--CCCC-CCCCChHHHHHHHHhCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS--VHSP-DAPAFPAGFLEWALSNG 81 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s--~~~~-~~~~~~~~l~~~~~~~~ 81 (531)
|++|+|||||+++.+++.++++++|+++++.. +.+++ ...|+|||||-..- +.+. ....+ .+.++...+.+
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~---d~~~i--~~AD~liLPGVGaf~~am~~L~~~gl-~~~i~~~~~~~ 74 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSR---DPEEI--LKADKLILPGVGAFGAAMANLRERGL-IEAIKEAVESG 74 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEec---CHHHH--hhCCEEEecCCCCHHHHHHHHHhcch-HHHHHHHHhcC
Confidence 46799999999999999999999999888753 44444 56799999995441 1000 01122 23444445568
Q ss_pred CcEEEeeHHHHHHHHH------------cCCEEeec-----CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc
Q 039743 82 VYVLGICYGLQLMVQK------------LDGVVKVG-----EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV 144 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~------------~GG~v~~~-----~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~ 144 (531)
+|+||||+|||+|... +.|+|.+. +.|++||+.+++.++++||+++++. ..+|+.|+|.+.
T Consensus 75 kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~~--~~~YFVHSY~~~ 152 (204)
T COG0118 75 KPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPDG--AYFYFVHSYYVP 152 (204)
T ss_pred CCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeeccCCChhhcCCCCC--CEEEEEEEEeec
Confidence 9999999999999883 34778775 4579999999998778999999987 799999999976
Q ss_pred cCCCCcEEEEEeCCC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 145 VLPDGFEVVARSQQG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 145 ~lp~g~~vla~s~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
. .+.-.+++.++.+ .+.|+.. +++++|+|||||+++ ..|.++++||+
T Consensus 153 ~-~~~~~v~~~~~YG~~f~AaV~-k~N~~g~QFHPEKSg-~~Gl~lL~NFl 200 (204)
T COG0118 153 P-GNPETVVATTDYGEPFPAAVA-KDNVFGTQFHPEKSG-KAGLKLLKNFL 200 (204)
T ss_pred C-CCCceEEEeccCCCeeEEEEE-eCCEEEEecCcccch-HHHHHHHHHHH
Confidence 4 3445667767655 4444432 468999999999998 78999999998
|
|
| >CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=242.37 Aligned_cols=175 Identities=21% Similarity=0.315 Sum_probs=136.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC-----CCCChHHHHHHHHh
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD-----APAFPAGFLEWALS 79 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~-----~~~~~~~l~~~~~~ 79 (531)
|++|+|||||.++..+++++++.+|+++.+++.+ +++ .++|+||+||+.+ + +.. ...+...+ +.+.+
T Consensus 1 ~~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~---~~l--~~~d~iIlPG~g~-~-~~~~~~l~~~gl~~~i-~~~~~ 72 (210)
T CHL00188 1 MMKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSE---SEL--AQVHALVLPGVGS-F-DLAMKKLEKKGLITPI-KKWIA 72 (210)
T ss_pred CcEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCH---HHh--hhCCEEEECCCCc-h-HHHHHHHHHCCHHHHH-HHHHH
Confidence 4579999999999999999999999999988643 233 4579999877543 2 111 01222333 34456
Q ss_pred CCCcEEEeeHHHHHHHHH-----------cCCEEeec------CcccceeeeEEEecC------CccccCCCCCceEEEE
Q 039743 80 NGVYVLGICYGLQLMVQK-----------LDGVVKVG------EKQEYGRMEILVERS------SGIFGNKKVGHHQVVW 136 (531)
Q Consensus 80 ~~iPvLGIC~G~Qlla~~-----------~GG~v~~~------~~~e~G~~~v~~~~~------~~l~~~~~~~~~~~v~ 136 (531)
+++|+||||+|||+|++. ++|+|.+. +.+++||.+++++.+ +++|+++++. +.+|
T Consensus 73 ~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~--~~v~ 150 (210)
T CHL00188 73 EGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLN--PWAY 150 (210)
T ss_pred cCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCC--CEEE
Confidence 799999999999999986 56788776 457899999998755 5699999988 9999
Q ss_pred eeccCccccCCCCcEEEEEeC----CCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 137 MSHGDEAVVLPDGFEVVARSQ----QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 137 ~~H~~~v~~lp~g~~vla~s~----~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++|++.+. |++...++.+. ++.++|++. +++||+|||||++ ++.|.+|++||+
T Consensus 151 ~~HS~~v~--p~~~~~l~~t~~~~~~~~v~a~~~--~~i~GvQFHPE~s-~~~G~~il~nfl 207 (210)
T CHL00188 151 FVHSYGVM--PKSQACATTTTFYGKQQMVAAIEY--DNIFAMQFHPEKS-GEFGLWLLREFM 207 (210)
T ss_pred EeCccEec--CCCCceEEEEEecCCcceEEEEec--CCEEEEecCCccc-cHhHHHHHHHHH
Confidence 99999874 55566666653 445999985 5899999999999 799999999998
|
|
| >PRK07567 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=243.38 Aligned_cols=175 Identities=19% Similarity=0.306 Sum_probs=140.4
Q ss_pred CEEEEEeCCCCcH---HHHHHHHHHCCCE---EEEEeCCCC-hhccccCCCCEEEEcCCCCCCCCCC---CCCChH----
Q 039743 6 ELVLILDYGSQYT---HLITRRIRSLSIL---SLCLSGTCS-LDDITAKNPRVVILSGGPHSVHSPD---APAFPA---- 71 (531)
Q Consensus 6 ~~I~IlD~G~~~~---~~i~r~l~~~G~~---~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~~~~~---~~~~~~---- 71 (531)
+.|+|+-.+..-. ..+++.++..|.. +.++..... .......++|||||+|||.++++.. .||+..
T Consensus 2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~ 81 (242)
T PRK07567 2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAE 81 (242)
T ss_pred CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHH
Confidence 3489997776543 6788999988864 444333222 1111246789999999999999862 566532
Q ss_pred --HHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEec---CCccccCCCCCceEEEEeeccCccccC
Q 039743 72 --GFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVER---SSGIFGNKKVGHHQVVWMSHGDEAVVL 146 (531)
Q Consensus 72 --~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~---~~~l~~~~~~~~~~~v~~~H~~~v~~l 146 (531)
.+++.+.++++||||||+|||+|+.++||+|.+...+++|+..++++. .+++|.+++.. +.++++|+|.|..+
T Consensus 82 i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~g~e~G~~~v~l~~~g~~~~l~~~~~~~--~~~~~~H~d~V~~l 159 (242)
T PRK07567 82 LSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTYGEPVGAVTVSLTDAGRADPLLAGLPDT--FTAFVGHKEAVSAL 159 (242)
T ss_pred HHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCCCCcCccEEEEECCccCCChhhcCCCCc--eEEEeehhhhhhhC
Confidence 345556688999999999999999999999998656799999999875 35789988888 99999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCC
Q 039743 147 PDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 147 p~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
|++++++|++++|+++|+++ ++++||+|||||++..
T Consensus 160 p~~~~vlA~s~~~~vqa~~~-~~~~~gvQfHPE~~~~ 195 (242)
T PRK07567 160 PPGAVLLATSPTCPVQMFRV-GENVYATQFHPELDAD 195 (242)
T ss_pred CCCCEEEEeCCCCCEEEEEe-CCCEEEEEeCCcCCHH
Confidence 99999999999999999997 4679999999999874
|
|
| >cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=233.87 Aligned_cols=178 Identities=30% Similarity=0.391 Sum_probs=146.2
Q ss_pred EEEEEeCCCCc-HHHHHHHHHHCC---CEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCCh--HHHHHHHHhC
Q 039743 7 LVLILDYGSQY-THLITRRIRSLS---ILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFP--AGFLEWALSN 80 (531)
Q Consensus 7 ~I~IlD~G~~~-~~~i~r~l~~~G---~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~--~~l~~~~~~~ 80 (531)
+|+|+...... ...+.++++++| .++++++...........++|||||+||+.++.....+|.. .++++.+.++
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA 80 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHC
Confidence 47888665443 567899999999 68888776554321225789999999999987222334433 3677888888
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCcc-cceeeeEEEecC---CccccCCCCCceEEEEeeccCccccCCCCcEEEEEe
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEKQ-EYGRMEILVERS---SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARS 156 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~~-e~G~~~v~~~~~---~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s 156 (531)
++|+||||+|||+|+.++||+|.+.+.. +.|++++.++.. .++++++++. +.++++|++.|..+|++++++|++
T Consensus 81 ~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~~~v~~~~~~~~~~l~~~~~~~--~~v~~~H~~~v~~lp~~~~~la~~ 158 (188)
T cd01741 81 GKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKADPLFAGLPDE--FPVFHWHGDTVVELPPGAVLLASS 158 (188)
T ss_pred CCCEEEECccHHHHHHHhCCEEecCCCcceeEEEEEEeccccccCchhhcCCCc--ceEEEEeccChhhCCCCCEEeecC
Confidence 9999999999999999999999998766 899999998754 4678888877 999999999999999999999999
Q ss_pred CCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 157 QQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 157 ~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++|.+++++.. .++||+||||| .++++||+
T Consensus 159 ~~~~v~~~~~~-~~~~g~QfHPE-------~~~~~~f~ 188 (188)
T cd01741 159 EACPNQAFRYG-DRALGLQFHPE-------ERLLRNFL 188 (188)
T ss_pred CCCCcceEEec-CCEEEEccCch-------HHHHhhhC
Confidence 99999999975 78999999999 67899884
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=254.29 Aligned_cols=177 Identities=22% Similarity=0.351 Sum_probs=139.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+|+|||.+| +++++|+++|++++++|++.+.+++....+|||||||||+++.+. ....++++.+.+ ++|+|
T Consensus 174 ~~i~viD~G~k~--ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~~~---~~~i~~i~~~~~-~~PIL 247 (358)
T TIGR01368 174 KRVVVIDFGVKQ--NILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPAAV---EPAIETIRKLLE-KIPIF 247 (358)
T ss_pred cEEEEEeCCcHH--HHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHHHH---HHHHHHHHHHHc-CCCEE
Confidence 479999999875 599999999999999999887776655578999999999865321 123356677776 99999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceee-eEEEecCCccccCCCCCceEEEEeeccCccc--cCC-CCcEEEEEe-CCCc
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRM-EILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLP-DGFEVVARS-QQGA 160 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~-~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp-~g~~vla~s-~~~~ 160 (531)
|||+|||+|+.++||++.+.+..+.|.. ++.. +.....+.+.++|++.|. .+| ++++++|.+ +|+.
T Consensus 248 GIClG~QlLa~a~Gg~v~kl~~gh~G~nhpV~~---------~~~~~v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~ 318 (358)
T TIGR01368 248 GICLGHQLLALAFGAKTYKMKFGHRGGNHPVKD---------LITGRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGT 318 (358)
T ss_pred EECHHHHHHHHHhCCceeccCcCcCCCceeeEE---------CCCCcEEEeecCCCcEEcccccCCCceEEEEEECCCCc
Confidence 9999999999999999998765555532 2221 111212556678999985 466 789999998 6899
Q ss_pred EEEEEECCCcEEEEecCCCCCCCcc-cchhhhhheeccc
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSPE-GMETLRYFLFDVC 198 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~~-g~~i~~~F~~~~~ 198 (531)
|+|+++++.++||+|||||..+.+. ...||++|+ +.+
T Consensus 319 Vegi~h~~~pi~gVQfHPE~~~gp~d~~~lF~~F~-~~~ 356 (358)
T TIGR01368 319 VEGIRHKDLPVFSVQYHPEASPGPHDTEYLFDEFI-DLI 356 (358)
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCChHHHHHHHH-HHh
Confidence 9999999999999999999987764 567999997 544
|
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. |
| >PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=236.03 Aligned_cols=175 Identities=21% Similarity=0.347 Sum_probs=136.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC---CCCChHHHHHHHHhCCCcE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD---APAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~---~~~~~~~l~~~~~~~~iPv 84 (531)
|+|+|||.+|.+++.+.++.+|+++.++... +++ .++|+|||||+.+...+.. ...+...+.+.+.++++|+
T Consensus 2 i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~---~~l--~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pv 76 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFEKIGAINFIAKNP---KDL--QKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQKKPI 76 (201)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCeEEEECCH---HHH--cCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcE
Confidence 8999999999999999999999988876543 233 4689999988765211100 1123456667667889999
Q ss_pred EEeeHHHHHHHHH------------cCCEEeecC------cccceeeeEEEecCCccccCCCCCceEEEEeeccCccccC
Q 039743 85 LGICYGLQLMVQK------------LDGVVKVGE------KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVL 146 (531)
Q Consensus 85 LGIC~G~Qlla~~------------~GG~v~~~~------~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~l 146 (531)
||||+|||+|+.+ ++|+|.+.. .++.||+.+++.+++++|+++++. +.++++|++.+..+
T Consensus 77 lGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~~~~~l~~~l~~~--~~~~~vHS~~v~~~ 154 (201)
T PRK13152 77 LGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILKQSPLYQGIPEK--SDFYFVHSFYVKCK 154 (201)
T ss_pred EEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEECCCChhhhCCCCC--CeEEEEcccEeecC
Confidence 9999999999997 237787643 357899999998888999999887 89999999998655
Q ss_pred CCCcEEEEEeCCC--cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 147 PDGFEVVARSQQG--AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 147 p~g~~vla~s~~~--~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+ ..+.|.++++ .+++++ ++++||+|||||+++ +.|.++|+||+
T Consensus 155 ~--~~v~a~~~~g~~~~~a~~--~~~i~GvQFHPE~~~-~~g~~ll~~Fl 199 (201)
T PRK13152 155 D--EFVSAKAQYGHKFVASLQ--KDNIFATQFHPEKSQ-NLGLKLLENFA 199 (201)
T ss_pred C--CcEEEEECCCCEEEEEEe--cCCEEEEeCCCeecC-hhhHHHHHHHH
Confidence 4 4567776655 455665 478999999999985 68999999997
|
|
| >PLN02889 oxo-acid-lyase/anthranilate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=272.52 Aligned_cols=191 Identities=18% Similarity=0.273 Sum_probs=154.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHC-CCEEEEEeCCC-Chhccc-----cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHH
Q 039743 6 ELVLILDYGSQYTHLITRRIRSL-SILSLCLSGTC-SLDDIT-----AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL 78 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~-G~~~~v~~~~~-~~~~~~-----~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~ 78 (531)
++||+||..++|++++++.|+++ |..+.++..+. +.+++. ...+|||||||||+++..........+++..+
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~- 160 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC- 160 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-
Confidence 47999999999999999999998 99988888764 555542 25799999999999654322111122333321
Q ss_pred hCCCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCC--ceEEEEeeccCcc--ccCCCCcEEEE
Q 039743 79 SNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVG--HHQVVWMSHGDEA--VVLPDGFEVVA 154 (531)
Q Consensus 79 ~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~--~~~~v~~~H~~~v--~~lp~g~~vla 154 (531)
.++||||||+|||+|+.++||+|.+.+.+++|....-......+|.+++.. ..+.|..+|+..| ..+|++++++|
T Consensus 161 -~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~HG~~s~I~h~~~~lF~glp~~~~~~f~v~RYHSL~v~~~~lP~~L~~~A 239 (918)
T PLN02889 161 -RDIPILGVCLGHQALGYVHGARIVHAPEPVHGRLSEIEHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPKELVPIA 239 (918)
T ss_pred -CCCcEEEEcHHHHHHHHhcCceEEeCCCceeeeeeeEeecCchhhcCCCcCCCCCceEEeCCCcccccCCCCCceEEEE
Confidence 479999999999999999999999999999998663223455799999861 1289999999888 46999999999
Q ss_pred EeCC-----------------------------------------------------CcEEEEEECCCcEEEEecCCCCC
Q 039743 155 RSQQ-----------------------------------------------------GAVAAVENREKRLFGLQYHPEVT 181 (531)
Q Consensus 155 ~s~~-----------------------------------------------------~~v~ai~~~~~~i~gvQFHPE~~ 181 (531)
++++ +.++|++|.+.|+||+|||||..
T Consensus 240 ~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~~GVQfHPESi 319 (918)
T PLN02889 240 WTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHYGLQFHPESI 319 (918)
T ss_pred EECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCceEEEEeCCccc
Confidence 8854 57999999999999999999999
Q ss_pred CCcccchhhhhheecccc
Q 039743 182 HSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 182 ~~~~g~~i~~~F~~~~~~ 199 (531)
.++.|.+||+||+ ++|+
T Consensus 320 ~t~~G~~l~~nF~-~~~~ 336 (918)
T PLN02889 320 ATCYGRQIFKNFR-EITQ 336 (918)
T ss_pred cCchhHHHHHHHH-HHHH
Confidence 9999999999998 6664
|
|
| >PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=234.30 Aligned_cols=179 Identities=22% Similarity=0.346 Sum_probs=141.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCC--hHHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAF--PAGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~--~~~l~~~~~~~~iP 83 (531)
+||+|||||++|...++++++++|+++++++. .+++ .++|||||+||.. +.+...+. ..+.++.+.++++|
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~---~~~~--~~~d~iii~G~~~--~~~~~~~~~~~~~~i~~~~~~~~P 73 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD---PEEI--LDADGIVLPGVGA--FGAAMENLSPLRDVILEAARSGKP 73 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECC---HHHH--ccCCEEEECCCCC--HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 37999999999999999999999999998753 2233 5789999988532 22211222 23567777888999
Q ss_pred EEEeeHHHHHHHHH------------cCCEEeecCc----ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCC
Q 039743 84 VLGICYGLQLMVQK------------LDGVVKVGEK----QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 84 vLGIC~G~Qlla~~------------~GG~v~~~~~----~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp 147 (531)
+||||+|+|+|+++ +||+|.+.+. +++|+..+++..+++++++++ . ..++++|++.+ .++
T Consensus 74 ilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~~~~~l~~~l~-~--~~~~~~Hs~~~-~~~ 149 (200)
T PRK13143 74 FLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVVKDCPLFEGID-G--EYVYFVHSYYA-YPD 149 (200)
T ss_pred EEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEcCCChhhccCC-C--cEEEEEeeeee-CCC
Confidence 99999999999985 6899987543 577999999888888998884 4 46888999986 466
Q ss_pred CCcEEEEEeCC-CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 148 DGFEVVARSQQ-GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 148 ~g~~vla~s~~-~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+++.++|++++ +.++++.. ++++||+|||||++. +.|.+||++|+ +.|
T Consensus 150 ~~~~~la~~~~~~~~~~~~~-~~~~~gvQfHPE~~~-~~g~~i~~~f~-~~~ 198 (200)
T PRK13143 150 DEDYVVATTDYGIEFPAAVC-NDNVFGTQFHPEKSG-ETGLKILENFV-ELI 198 (200)
T ss_pred CcceEEEEEcCCCEEEEEEE-cCCEEEEeCCCccch-HHHHHHHHHHH-HHH
Confidence 77899999986 45666654 569999999999985 68999999997 555
|
|
| >COG2071 Predicted glutamine amidotransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-28 Score=230.22 Aligned_cols=179 Identities=25% Similarity=0.337 Sum_probs=143.9
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCC----CCC-----------CCCCChHHHHHHHHhC
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSV----HSP-----------DAPAFPAGFLEWALSN 80 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~----~~~-----------~~~~~~~~l~~~~~~~ 80 (531)
.+.+.+++..+|.-+.++|...+.+.+. ....|||||||| +++ |.+ ....++..+++.|+++
T Consensus 28 ~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~ 106 (243)
T COG2071 28 PYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALER 106 (243)
T ss_pred HHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHc
Confidence 4568888888999999999554444332 567899999999 432 322 1223455899999999
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeec-------------CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCC
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVG-------------EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~-------------~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp 147 (531)
++||||||+|+|+|+.+|||++.+. ....+..+.|++.+++.|.+-++... +.|++.|++.+.+|.
T Consensus 107 ~iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g~~~-~~VNS~HhQaIk~La 185 (243)
T COG2071 107 GIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILGESE-FMVNSFHHQAIKKLA 185 (243)
T ss_pred CCCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecCCccHHHhcCccc-eeecchHHHHHHHhC
Confidence 9999999999999999999999873 12245678888888888888777443 899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEECC-CcEEEEecCCCCCCCc--ccchhhhhheecccc
Q 039743 148 DGFEVVARSQQGAVAAVENRE-KRLFGLQYHPEVTHSP--EGMETLRYFLFDVCG 199 (531)
Q Consensus 148 ~g~~vla~s~~~~v~ai~~~~-~~i~gvQFHPE~~~~~--~g~~i~~~F~~~~~~ 199 (531)
+++++.|.++|+.|+|+++++ ..++|||||||..... ..+++|+.|. ++|+
T Consensus 186 ~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~-~~~~ 239 (243)
T COG2071 186 PGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFV-NACK 239 (243)
T ss_pred CCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHH-HHHH
Confidence 999999999999999999985 5588999999987543 5679999998 7664
|
|
| >TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-28 Score=268.41 Aligned_cols=189 Identities=20% Similarity=0.228 Sum_probs=146.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHC-C--CEEEEEeCCCChhcc-c-cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSL-S--ILSLCLSGTCSLDDI-T-AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~-G--~~~~v~~~~~~~~~~-~-~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
.+||+||++++|++++++.|++. | +.+.+++++....++ . ..++|||||+|||+++.+.....+..++++...+.
T Consensus 6 ~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~ 85 (742)
T TIGR01823 6 LHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWELANLD 85 (742)
T ss_pred ceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHHhcccC
Confidence 57999999999999999999997 3 567888877543322 1 45799999999999886554333333444331123
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCcccceeee-EEEecCCccccCCCCCceEEEEeeccCcccc-CCCC--cEEEEEe
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRME-ILVERSSGIFGNKKVGHHQVVWMSHGDEAVV-LPDG--FEVVARS 156 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~-v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~-lp~g--~~vla~s 156 (531)
++||||||+|||+|+.++||+|.+.+.+++|+.. +.. ....+|.+++ . +.++++|++.+.. .|+. +.+++.+
T Consensus 86 ~iPvLGIClG~QlLa~a~GG~v~~~~~~~hG~~~~v~~-~~~~lf~gl~-~--~~v~~~Hs~~v~~~~~~~l~~~~~a~~ 161 (742)
T TIGR01823 86 EVPVLGICLGFQSLCLAQGADISRLPTPKHGQVYEMHT-NDAAIFCGLF-S--VKSTRYHSLYANPEGIDTLLPLCLTED 161 (742)
T ss_pred CCcEEEEchhhHHHHhhcCCEEEECCCCCcCeEEEEEE-CCccccCCCC-C--CceeEEEEEEccCCCCCcceEEEEEEc
Confidence 5999999999999999999999999888888743 433 3456888887 3 7899999998854 4444 4566666
Q ss_pred CCC-cEEEEEECCCcEEEEecCCCCCCCccc-chhhhhheecccc
Q 039743 157 QQG-AVAAVENREKRLFGLQYHPEVTHSPEG-METLRYFLFDVCG 199 (531)
Q Consensus 157 ~~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g-~~i~~~F~~~~~~ 199 (531)
+++ .++|+++.+.++||+|||||+.+++.| .+||+||+ ++|.
T Consensus 162 ~~~~~i~ai~h~~~pi~GVQFHPE~~~s~~g~~~Lf~nFl-~~~~ 205 (742)
T TIGR01823 162 EEGIILMSAQTKKKPWFGVQYHPESCCSELGSGKLVSNFL-KLAF 205 (742)
T ss_pred CCCCeEEEEEEcCCceEEEEeCcccCCCCccHHHHHHHHH-HHHH
Confidence 554 699999999999999999999888876 99999998 6653
|
This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. |
| >TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-28 Score=233.16 Aligned_cols=175 Identities=24% Similarity=0.362 Sum_probs=137.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCC--CCCCCCCCC-hHHHHHHHHhCCCcE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS--VHSPDAPAF-PAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s--~~~~~~~~~-~~~l~~~~~~~~iPv 84 (531)
|+|+|||++|..+++++++.+|+++++++.+. ++ .++|+||++|+.+. .++. ..+. ...+++.+.+.++||
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~---~l--~~~d~lii~G~~~~~~~~~~-l~~~~~~~l~~~~~~~~~pv 74 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSK---EA--ELADKLILPGVGAFGAAMAR-LRENGLDLFVELVVRLGKPV 74 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHH---Hh--ccCCEEEECCCCCHHHHHHH-HHHcCcHHHHHHHHhCCCCE
Confidence 68999999999999999999999999988542 22 46899999884331 1110 0111 234546667789999
Q ss_pred EEeeHHHHHHHHH------------cCCEEeecC---cccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCC
Q 039743 85 LGICYGLQLMVQK------------LDGVVKVGE---KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDG 149 (531)
Q Consensus 85 LGIC~G~Qlla~~------------~GG~v~~~~---~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g 149 (531)
||||+|||+|+.+ +||+|.+.+ .++.|+..+....++++|+++++. +.++++|++.+...| +
T Consensus 75 lGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~--~~v~~~Hs~~v~~~~-~ 151 (196)
T TIGR01855 75 LGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVKESPLLNGIDEG--AYFYFVHSYYAVCEE-E 151 (196)
T ss_pred EEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCeeeeeCCCChHHhCCCCC--CEEEEECeeEecCCC-C
Confidence 9999999999998 789998874 558999998888888899999988 999999999986544 5
Q ss_pred cEEEEEeCC-CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 150 FEVVARSQQ-GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 150 ~~vla~s~~-~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
. ++|.+++ +.++++. .++++||+|||||+++ +.|.++++||+
T Consensus 152 ~-~~a~~~~g~~~~~~~-~~~~i~GvQFHPE~~~-~~g~~ll~~f~ 194 (196)
T TIGR01855 152 A-VLAYADYGEKFPAAV-QKGNIFGTQFHPEKSG-KTGLKLLENFL 194 (196)
T ss_pred c-EEEEEcCCcEEEEEE-ecCCEEEEECCCccCc-HhHHHHHHHHH
Confidence 4 5666655 5666654 5678999999999985 79999999997
|
This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6. |
| >PRK13525 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-28 Score=227.66 Aligned_cols=176 Identities=19% Similarity=0.273 Sum_probs=133.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCC-hHHHHHHHHhCCCc
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAF-PAGFLEWALSNGVY 83 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~-~~~l~~~~~~~~iP 83 (531)
|++|.|+++.++|... .++++.+|+.+..++.. ++ ..++|||||+||++++++...... ..++++.+.++++|
T Consensus 1 ~m~~~i~~~~g~~~~~-~~~l~~~g~~~~~~~~~---~~--l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~P 74 (189)
T PRK13525 1 MMKIGVLALQGAVREH-LAALEALGAEAVEVRRP---ED--LDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLP 74 (189)
T ss_pred CCEEEEEEcccCHHHH-HHHHHHCCCEEEEeCCh---hH--hccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCe
Confidence 3579999999998755 58899999999888642 22 356899999999987654311111 13567777788999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEe-----------cCCccccCCCCCceEEEEeeccCccccCCCCcEE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVE-----------RSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEV 152 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~-----------~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~v 152 (531)
+||||+|+|+|+.++||. ...++|..++++. ..++++.++++. +.+|++|+|.|..+|+++++
T Consensus 75 ilGIC~G~QlL~~~~gg~----~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~~~~~--~~~~~~H~d~v~~lp~~~~v 148 (189)
T PRK13525 75 VFGTCAGMILLAKEIEGY----EQEHLGLLDITVRRNAFGRQVDSFEAELDIKGLGEP--FPAVFIRAPYIEEVGPGVEV 148 (189)
T ss_pred EEEECHHHHHHHhhcccC----CCCceeeEEEEEEEccCCCceeeEEecccccCCCCC--eEEEEEeCceeeccCCCcEE
Confidence 999999999999999983 1122232222221 223567777767 99999999999999999999
Q ss_pred EEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 153 VARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 153 la~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
+|+++++. ++++. +++||+|||||++.+ .+||+||+ ++|+
T Consensus 149 lA~~~~~~-~~~~~--~~~~g~QfHPE~~~~---~~~~~~f~-~~~~ 188 (189)
T PRK13525 149 LATVGGRI-VAVRQ--GNILATSFHPELTDD---TRVHRYFL-EMVK 188 (189)
T ss_pred EEEcCCEE-EEEEe--CCEEEEEeCCccCCC---chHHHHHH-HHhh
Confidence 99997655 56764 589999999999874 79999997 7774
|
|
| >PRK12838 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-28 Score=245.60 Aligned_cols=178 Identities=22% Similarity=0.322 Sum_probs=138.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+++||| +.++++++|+++|+.++++|++.+.+++...++|||||||||+++.+.. ....+++.+.++ +|+|
T Consensus 168 ~~V~viD~G--~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp~~~~---~~~~~i~~~~~~-~Pvl 241 (354)
T PRK12838 168 KHVALIDFG--YKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKELQ---PYLPEIKKLISS-YPIL 241 (354)
T ss_pred CEEEEECCC--HHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCChHHhH---HHHHHHHHHhcC-CCEE
Confidence 579999998 6788999999999999999998877766556899999999999764321 123455555555 9999
Q ss_pred EeeHHHHHHHHHcCCEEeecCccccee-eeEEEecCCccccCCCCCceEEEEeeccCcccc--CCC-CcEEEEEe-CCCc
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGR-MEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV--LPD-GFEVVARS-QQGA 160 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~-~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~--lp~-g~~vla~s-~~~~ 160 (531)
|||+|||+|+.++||++.+.+..+.|. +++.....+ ..+.+.++|++.|.. +++ ++++.+.+ +|+.
T Consensus 242 GIClG~QlLa~a~Gg~v~kl~~gh~G~~hpV~~~~~~---------~~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~ 312 (354)
T PRK12838 242 GICLGHQLIALALGADTEKLPFGHRGANHPVIDLTTG---------RVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGS 312 (354)
T ss_pred EECHHHHHHHHHhCCEEecCCCCccCCceEEEECCCC---------eEEEeccchheEecccccCCCCcEEEEEECCCCe
Confidence 999999999999999999876554443 334332211 114566789999853 664 58999986 6889
Q ss_pred EEEEEECCCcEEEEecCCCCCCCc-ccchhhhhheecccc
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSP-EGMETLRYFLFDVCG 199 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~-~g~~i~~~F~~~~~~ 199 (531)
++|+++++.++||+|||||....+ ++..||++|+ +.|+
T Consensus 313 Veai~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~-~~~~ 351 (354)
T PRK12838 313 IEGLRHKKKPVLSVQFHPEAHPGPHDAEYIFDEFL-EMME 351 (354)
T ss_pred EEEEEECCCCEEEEEeCCCCCCCCccHHHHHHHHH-HHHH
Confidence 999999999999999999998765 5789999998 5553
|
|
| >PRK08250 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=231.40 Aligned_cols=178 Identities=20% Similarity=0.257 Sum_probs=143.6
Q ss_pred EEEEEe-CCCCcHHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCC--CCCCCCh----HHHHHHH
Q 039743 7 LVLILD-YGSQYTHLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHS--PDAPAFP----AGFLEWA 77 (531)
Q Consensus 7 ~I~IlD-~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~--~~~~~~~----~~l~~~~ 77 (531)
+|+|+- -...-...+..++++.|..+.+...... +.+. ..++||||++|||.++++ ...+|+. .++++.+
T Consensus 2 ~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g-~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~ 80 (235)
T PRK08250 2 RVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAG-EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQA 80 (235)
T ss_pred eEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCC-CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHH
Confidence 467762 2223355688899999998887654332 1222 357999999999998654 3456762 3677888
Q ss_pred HhCCCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC---CccccCCCCCceEEEEeeccCccccCCCCcEEEE
Q 039743 78 LSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS---SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVA 154 (531)
Q Consensus 78 ~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~---~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla 154 (531)
.++++|+||||+|+|+|+.++||+|.+++.+|+|+.+++++.. +++|.++++. +.++++|+|. ..+|+|++++|
T Consensus 81 ~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~v~lt~~g~~d~l~~~~~~~--~~v~~~H~d~-~~lP~~a~~LA 157 (235)
T PRK08250 81 IKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIGYFPITLTEAGLKDPLLSHFGST--LTVGHWHNDM-PGLTDQAKVLA 157 (235)
T ss_pred HHcCCCEEEEChhHHHHHHHhCceeccCCCCceeEEEEEEccccccCchhhcCCCC--cEEEEEecce-ecCCCCCEEEE
Confidence 8889999999999999999999999998888999999998854 4689999888 9999999997 57999999999
Q ss_pred EeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 155 RSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 155 ~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+|+.|+++|++. +.++||+|||||++.. +++.++
T Consensus 158 ~s~~~~~qa~~~-~~~~~g~QfHPE~~~~-----~~~~~~ 191 (235)
T PRK08250 158 TSEGCPRQIVQY-SNLVYGFQCHMEFTVE-----AVELLI 191 (235)
T ss_pred CCCCCCceEEEe-CCCEEEEeecCcCCHH-----HHHHHH
Confidence 999999999996 5679999999999874 666665
|
|
| >PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=245.36 Aligned_cols=166 Identities=27% Similarity=0.386 Sum_probs=132.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+++|||. .++|+|+|+++|++++++|++.+.+++...++|||||||||+++.+ .++ ..+.++.+. .++|+|
T Consensus 241 ~~IvviD~G~--K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~~--~~~-~ie~ik~l~-~~iPIl 314 (415)
T PLN02771 241 YHVIAYDFGI--KHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPSA--VPY-AVETVKELL-GKVPVF 314 (415)
T ss_pred CEEEEECCCh--HHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChhH--hhH-HHHHHHHHH-hCCCEE
Confidence 4799999997 4679999999999999999998888776678999999999987632 222 223344433 489999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceee-eEEEecCCccccCCCCCceEEEEeeccCcc--ccCCCCcEEEEEe-CCCcE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRM-EILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPDGFEVVARS-QQGAV 161 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~-~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~g~~vla~s-~~~~v 161 (531)
|||+|||+|+.++||++.+.+.++.|.. ++.. ........+.++|++.| .++|+++++++.+ +|+.+
T Consensus 315 GICLGhQlLa~AlGGkv~K~~~Gh~G~n~pV~~---------~~~~~v~itsqnHg~aVd~~sLp~~~~vt~~nlnDgtv 385 (415)
T PLN02771 315 GICMGHQLLGQALGGKTFKMKFGHHGGNHPVRN---------NRTGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSC 385 (415)
T ss_pred EEcHHHHHHHHhcCCeEEECCCCcccceEEEEE---------CCCCCEEEEecCHHHhhccccCCCceEEEEEeCCCCcE
Confidence 9999999999999999999876665543 2221 11111245789999998 6899999999987 78999
Q ss_pred EEEEECCCcEEEEecCCCCCCCccc
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEG 186 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g 186 (531)
+|+++++.++||+|||||..+.+..
T Consensus 386 egi~~~~~pi~gVQFHPEa~pgp~D 410 (415)
T PLN02771 386 AGLAFPALNVMSLQYHPEASPGPHD 410 (415)
T ss_pred EEEEECCCCEEEEEcCCCCCCCCCc
Confidence 9999999999999999999887643
|
|
| >cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-28 Score=229.13 Aligned_cols=151 Identities=26% Similarity=0.422 Sum_probs=125.6
Q ss_pred cHHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCC---C-CCCC----------ChHHHHHHHHhC
Q 039743 17 YTHLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHS---P-DAPA----------FPAGFLEWALSN 80 (531)
Q Consensus 17 ~~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~---~-~~~~----------~~~~l~~~~~~~ 80 (531)
++++++++|+++|+.++++|++.+.+++. ..++|||||||||+...+ + ..++ ....+++.+.+.
T Consensus 20 ~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 99 (189)
T cd01745 20 LNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALER 99 (189)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHC
Confidence 46789999999999999999886654432 467999999999985321 1 1111 124567777788
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCc
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGA 160 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~ 160 (531)
++||||||+|||+|+.++||+|.+.. .++++|++.|.++|++++++|.++++.
T Consensus 100 ~~PilgiC~G~Q~l~~~~Gg~v~~~~---------------------------~v~~~H~~~v~~~~~~~~vla~~~d~~ 152 (189)
T cd01745 100 GKPILGICRGMQLLNVALGGTLYQDI---------------------------RVNSLHHQAIKRLADGLRVEARAPDGV 152 (189)
T ss_pred CCCEEEEcchHHHHHHHhCCeEEcCC---------------------------ceechHHHHHhhcCCCCEEEEECCCCc
Confidence 99999999999999999999997753 467889999999999999999999999
Q ss_pred EEEEEECC-CcEEEEecCCCCCCC--cccchhhhhhe
Q 039743 161 VAAVENRE-KRLFGLQYHPEVTHS--PEGMETLRYFL 194 (531)
Q Consensus 161 v~ai~~~~-~~i~gvQFHPE~~~~--~~g~~i~~~F~ 194 (531)
++|+++.+ .++||+|||||++++ +.|.+||++|+
T Consensus 153 vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 153 IEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred EEEEEeCCCCeEEEEecCCCcCcccCchHhHHHHHhC
Confidence 99999976 689999999999987 79999999994
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=241.14 Aligned_cols=179 Identities=22% Similarity=0.378 Sum_probs=136.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+|||+|.+| +|.++|+++|+++.++|++.+.+++...++|||||||||+++.+.. .....++.+.+.++|+|
T Consensus 193 ~~I~viD~g~k~--ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGPg~p~~~~---~~i~~i~~~~~~~~Pil 267 (382)
T CHL00197 193 LKIIVIDFGVKY--NILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPSAIH---YGIKTVKKLLKYNIPIF 267 (382)
T ss_pred CEEEEEECCcHH--HHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCCCChhHHH---HHHHHHHHHHhCCCCEE
Confidence 579999998665 5999999999999999999887777666899999999999753321 11234455556689999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCcc--ccCCC-CcEEEEEe-CCCcE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPD-GFEVVARS-QQGAV 161 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~-g~~vla~s-~~~~v 161 (531)
|||+|||+|+.++||++.+.+.++.|.. . +. ..... .....++|++.+ ..+++ ++.+++.+ +++.+
T Consensus 268 GIClGhQlLa~a~Gg~v~k~~~Gh~g~n---~----pv--~~~~~-v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDgtv 337 (382)
T CHL00197 268 GICMGHQILSLALEAKTFKLKFGHRGLN---H----PS--GLNQQ-VEITSQNHGFAVNLESLAKNKFYITHFNLNDGTV 337 (382)
T ss_pred EEcHHHHHHHHHhCCEEeccCCCCCCCC---E----ec--CCCCc-eEEeecchheEeeccccCCCCcEEEEEECCCCCE
Confidence 9999999999999999998764433321 1 11 12223 123346788877 35665 78998875 68889
Q ss_pred EEEEECCCcEEEEecCCCCCCCccc-chhhhhheeccccc
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEG-METLRYFLFDVCGV 200 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g-~~i~~~F~~~~~~~ 200 (531)
+|+++.+.++||+|||||..+++.+ ..+|++|+ +.|+.
T Consensus 338 egi~h~~~pi~gVQFHPE~~~gp~d~~~lf~~Fv-~~~~~ 376 (382)
T CHL00197 338 AGISHSPKPYFSVQYHPEASPGPHDADYLFEYFI-EIIKH 376 (382)
T ss_pred EEEEECCCCcEEEeeCCCCCCCCCCHHHHHHHHH-HHHHh
Confidence 9999999999999999999987764 46999998 66543
|
|
| >PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=226.08 Aligned_cols=174 Identities=21% Similarity=0.387 Sum_probs=129.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC-----CCCChHHHHHHHHhCCC
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD-----APAFPAGFLEWALSNGV 82 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~-----~~~~~~~l~~~~~~~~i 82 (531)
|+|||||+++..++.++++.++.++.++. +.+++ .++|+||+||+... ... ...+...+ +.+.++++
T Consensus 2 i~iidyg~gNl~s~~~al~~~~~~~~~~~---~~~~l--~~~d~iIlPG~g~~--~~~~~~l~~~gl~~~i-~~~~~~~~ 73 (210)
T PRK14004 2 IAILDYGMGNIHSCLKAVSLYTKDFVFTS---DPETI--ENSKALILPGDGHF--DKAMENLNSTGLRSTI-DKHVESGK 73 (210)
T ss_pred EEEEECCCchHHHHHHHHHHcCCeEEEEC---CHHHh--ccCCEEEECCCCch--HHHHHHHHHcCcHHHH-HHHHHcCC
Confidence 89999999999999999999998877653 33333 47899999998642 111 01223334 44456799
Q ss_pred cEEEeeHHHHHHHHHcC------------------CEEeec-----CcccceeeeEEEe--cCCccccCCCCCceEEEEe
Q 039743 83 YVLGICYGLQLMVQKLD------------------GVVKVG-----EKQEYGRMEILVE--RSSGIFGNKKVGHHQVVWM 137 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~G------------------G~v~~~-----~~~e~G~~~v~~~--~~~~l~~~~~~~~~~~v~~ 137 (531)
|+||||+|||+|+++++ |+|.+. +.++.||..+++. .++++|+++++. +.+|+
T Consensus 74 pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~--~~v~~ 151 (210)
T PRK14004 74 PLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRKDKSKLLKGIGDQ--SFFYF 151 (210)
T ss_pred CEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceeccCCCCccccCCCCC--CEEEE
Confidence 99999999999999753 666653 4579999999876 456899999988 89999
Q ss_pred eccCccccCCCCcEEEEEeCC-C-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 138 SHGDEAVVLPDGFEVVARSQQ-G-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 138 ~H~~~v~~lp~g~~vla~s~~-~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+|+|.+ ..++...+++.+++ + .++|+. .++++||+|||||+++ +.|.+|++||+
T Consensus 152 ~HS~~~-~~~~~l~~sa~~~~~g~~~~a~~-~~~~i~GvQFHPE~s~-~~G~~iL~nfl 207 (210)
T PRK14004 152 IHSYRP-TGAEGNAITGLCDYYQEKFPAVV-EKENIFGTQFHPEKSH-THGLKLLENFI 207 (210)
T ss_pred eceeec-CCCCcceEEEeeeECCEEEEEEE-ecCCEEEEeCCcccCc-hhHHHHHHHHH
Confidence 999853 22333444454443 2 244555 4788999999999999 69999999997
|
|
| >PRK13527 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=220.72 Aligned_cols=180 Identities=19% Similarity=0.265 Sum_probs=136.4
Q ss_pred EEEEEeCC---CCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCC-CChHHHHHHHHhCCC
Q 039743 7 LVLILDYG---SQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP-AFPAGFLEWALSNGV 82 (531)
Q Consensus 7 ~I~IlD~G---~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~-~~~~~l~~~~~~~~i 82 (531)
||+|+=+. ..+...+.++++++|.+++++..+.+ +++ .++|+|||+||++++++.... .-..+.++.+.++++
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-~~l--~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-GDL--PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGL 78 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-HHh--ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCC
Confidence 45555332 33455788999999998888776543 333 578999999999876532111 112455666677899
Q ss_pred cEEEeeHHHHHHHHHcCC-EEeecCcccceeeeEEEecC-----------CccccCCCCCceEEEEeeccCccccCCCCc
Q 039743 83 YVLGICYGLQLMVQKLDG-VVKVGEKQEYGRMEILVERS-----------SGIFGNKKVGHHQVVWMSHGDEAVVLPDGF 150 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~GG-~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~ 150 (531)
|+||||+|||+|+.++|| .|...+..+.|+.++++.++ .+++.++++. +.++++|++.+..+|+++
T Consensus 79 pilGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~H~~~v~~lp~~~ 156 (200)
T PRK13527 79 PILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQRDSFEAEIDLSGLDGP--FHAVFIRAPAITKVGGDV 156 (200)
T ss_pred eEEEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCccccEEEeEeccccCCc--ceEEEEccccccccCCCe
Confidence 999999999999999998 55555666788888766431 2457777777 999999999999999999
Q ss_pred EEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 151 EVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 151 ~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+++|+++++.+ +++. +++||+|||||+++. .++|++|+ +.+
T Consensus 157 ~~la~~~~~~~-a~~~--~~~~g~QfHPE~~~~---~~l~~~f~-~~~ 197 (200)
T PRK13527 157 EVLAKLDDRIV-AVEQ--GNVLATAFHPELTDD---TRIHEYFL-KKV 197 (200)
T ss_pred EEEEEECCEEE-EEEE--CCEEEEEeCCCCCCC---CHHHHHHH-HHH
Confidence 99999999876 5653 689999999999875 78999998 444
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=238.79 Aligned_cols=181 Identities=25% Similarity=0.342 Sum_probs=138.9
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCC----hHHHHHHHHhC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAF----PAGFLEWALSN 80 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~----~~~l~~~~~~~ 80 (531)
..+|+|||||.++.+++.++++++|+.+.+++. .+++ .++|+|||+||.+.. ...+.+ ..+.++.+.+.
T Consensus 6 ~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~---~~~l--~~~D~lIlpG~gs~~--~~m~~L~~~gl~~~i~~~i~~ 78 (538)
T PLN02617 6 DSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQT---PEDI--LNADRLIFPGVGAFG--SAMDVLNNRGMAEALREYIQN 78 (538)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHCCCeEEEECC---hhhh--ccCCEEEECCCCCHH--HHHHHHHHcCHHHHHHHHHHc
Confidence 368999999999999999999999999887753 2233 578999999865521 100010 13455556678
Q ss_pred CCcEEEeeHHHHHHHHHc---------C---CEEeec------CcccceeeeEEEecCCccccCCCCCceEEEEeeccCc
Q 039743 81 GVYVLGICYGLQLMVQKL---------D---GVVKVG------EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDE 142 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~---------G---G~v~~~------~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~ 142 (531)
++|+||||+|||+|++++ | |+|.+. ..+++||+.+.+..+++++.+++ . ..++++|+|.
T Consensus 79 g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~~~spL~~~l~-~--~~vy~vHSy~ 155 (538)
T PLN02617 79 DRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQITKDSELLDGVG-G--RHVYFVHSYR 155 (538)
T ss_pred CCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEecCCChhHhcCC-C--cEEEEEeEEE
Confidence 999999999999999873 3 777664 23579999999888889998885 4 6799999999
Q ss_pred cccCCCCcE-EEEEeC--CCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 143 AVVLPDGFE-VVARSQ--QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 143 v~~lp~g~~-vla~s~--~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+..+|++.. +++.++ ++.++|+++ +++||+|||||+++ ..|.++|++|+...+
T Consensus 156 v~~~p~~~~~v~a~~~~g~~~IaAI~~--gnI~GVQFHPE~s~-~~G~~L~~nFl~~~~ 211 (538)
T PLN02617 156 ATPSDENKDWVLATCNYGGEFIASVRK--GNVHAVQFHPEKSG-ATGLSILRRFLEPKS 211 (538)
T ss_pred EEecCCCCcEEEEEEccCCCcEEEEEe--CCEEEEEcCCccCc-hhHHHHHHHHHHhhh
Confidence 877776544 444443 458899986 58999999999998 789999999985555
|
|
| >COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=223.50 Aligned_cols=176 Identities=22% Similarity=0.357 Sum_probs=140.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+++|||... +|.|.|.+.|+++.++|++.+.+++...+||||+||-||+++.. -......++..++..+|+|
T Consensus 180 ~~Vv~iD~GvK~--nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP~~---~~~~i~~ik~l~~~~iPif 254 (368)
T COG0505 180 KHVVVIDFGVKR--NILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAP---LDYAIETIKELLGTKIPIF 254 (368)
T ss_pred cEEEEEEcCccH--HHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCChhH---HHHHHHHHHHHhccCCCeE
Confidence 479999999864 69999999999999999999999988899999999999996411 1112245566667788999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEe-CCCcEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARS-QQGAVA 162 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s-~~~~v~ 162 (531)
|||+|||+|+.|+|++..++.-++.|.+ .|. +++........-++|++.|. ++++..+++..+ +|+.++
T Consensus 255 GICLGHQllalA~Ga~T~KmkFGHrG~N-------hPV-~dl~tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvE 326 (368)
T COG0505 255 GICLGHQLLALALGAKTYKMKFGHRGAN-------HPV-KDLDTGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVE 326 (368)
T ss_pred EEcHHHHHHHHhcCCceeecccCCCCCC-------cCc-ccccCCeEEEEecCCceecChhhcCCCceeEEEeCCCCCcc
Confidence 9999999999999999999864444432 222 23333334567789999995 566554777777 789999
Q ss_pred EEEECCCcEEEEecCCCCCCCc-ccchhhhhhe
Q 039743 163 AVENREKRLFGLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
++++.+.|+|.+|||||-++.+ +-..+|+.|+
T Consensus 327 Gi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi 359 (368)
T COG0505 327 GIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFI 359 (368)
T ss_pred ceecCCCceEEEccCCCCCCCCcccHHHHHHHH
Confidence 9999999999999999999877 5678999997
|
|
| >PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-26 Score=218.11 Aligned_cols=160 Identities=22% Similarity=0.346 Sum_probs=117.0
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCC----CCCC-CCC----------ChHHHHHHHHhC
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSV----HSPD-APA----------FPAGFLEWALSN 80 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~----~~~~-~~~----------~~~~l~~~~~~~ 80 (531)
.+.++++++++|..+.++|+..+.+++. ...+||||||||..++ |.+. .+. ++..+++.+.++
T Consensus 26 ~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~ 105 (217)
T PF07722_consen 26 AASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGR 105 (217)
T ss_dssp EHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCT
T ss_pred hHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhc
Confidence 4579999999999999999987665543 5689999999999543 3222 111 223566677778
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCcc------------cceeeeEEEecCCccccCCC-CCceEEEEeeccCccccCC
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEKQ------------EYGRMEILVERSSGIFGNKK-VGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~~------------e~G~~~v~~~~~~~l~~~~~-~~~~~~v~~~H~~~v~~lp 147 (531)
++||||||+|||+|+.++||++...-.. ....+.+.+.+++.|.+-+. .. ..|+++|+++|..++
T Consensus 106 ~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~~s~l~~~~~~~~--~~vns~Hhq~v~~l~ 183 (217)
T PF07722_consen 106 GKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVPGSLLAKILGSEE--IEVNSFHHQAVKPLG 183 (217)
T ss_dssp T--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEETTSTCCCTSHHCT--EEEEEEECEEECCHH
T ss_pred CCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceeccCchHHHHhCcCc--ceeecchhhhhhccC
Confidence 9999999999999999999998875322 34566777877777666665 45 899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEECCC--cEEEEecCCC
Q 039743 148 DGFEVVARSQQGAVAAVENREK--RLFGLQYHPE 179 (531)
Q Consensus 148 ~g~~vla~s~~~~v~ai~~~~~--~i~gvQFHPE 179 (531)
++|+++|.+.|+.++||+..++ +++|+|||||
T Consensus 184 ~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 184 EGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp CCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred CCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 9999999999999999999885 5999999999
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D. |
| >TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=208.49 Aligned_cols=184 Identities=21% Similarity=0.260 Sum_probs=136.9
Q ss_pred EEEEEeCCCCc-HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC-----CCChHHHHHHHHhC
Q 039743 7 LVLILDYGSQY-THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA-----PAFPAGFLEWALSN 80 (531)
Q Consensus 7 ~I~IlD~G~~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~-----~~~~~~l~~~~~~~ 80 (531)
+|+||||++++ .+.++++++++|+++++++++.. . ..++|+|||+||++....... .....+.++.+.+.
T Consensus 2 ~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~--~--l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 77 (227)
T TIGR01737 2 KVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG--S--LPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEK 77 (227)
T ss_pred eEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCC--C--CCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHc
Confidence 69999997665 67899999999999999887532 1 357899999999863111100 01123456666778
Q ss_pred CCcEEEeeHHHHHHHHH--cCCEEeecCccccee--eeEEEec-CCccccCCCCCceEEEEeeccCcc--------ccCC
Q 039743 81 GVYVLGICYGLQLMVQK--LDGVVKVGEKQEYGR--MEILVER-SSGIFGNKKVGHHQVVWMSHGDEA--------VVLP 147 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~--~GG~v~~~~~~e~G~--~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~~v--------~~lp 147 (531)
++||+|||+|+|+|+.+ ++|++.++...+|+. ..+++.. .++++++++....+.++.+|++.. .+|.
T Consensus 78 g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~ 157 (227)
T TIGR01737 78 GVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLE 157 (227)
T ss_pred CCEEEEECHHHHHHHHcCCCCCceeecCCCceEEEeEEEEECCCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHH
Confidence 99999999999999995 899999987777755 5555543 367888888653344445898765 3455
Q ss_pred CCcEEEEEe------------CC---CcEEEEEECCCcEEEEecCCCCC-----CCcccchhhhhhe
Q 039743 148 DGFEVVARS------------QQ---GAVAAVENREKRLFGLQYHPEVT-----HSPEGMETLRYFL 194 (531)
Q Consensus 148 ~g~~vla~s------------~~---~~v~ai~~~~~~i~gvQFHPE~~-----~~~~g~~i~~~F~ 194 (531)
+...++... ++ +.|+++.+++++++|+|||||+. .+++|..||+||+
T Consensus 158 ~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~~~~~~ 224 (227)
T TIGR01737 158 SNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLV 224 (227)
T ss_pred HCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhcccccCCcccHHHHHHHH
Confidence 555655544 23 36899999999999999999998 6789999999997
|
In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea. |
| >KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-24 Score=185.94 Aligned_cols=190 Identities=22% Similarity=0.384 Sum_probs=153.9
Q ss_pred EEEEEeCCCCcHHHHHHHH-HHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 7 LVLILDYGSQYTHLITRRI-RSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l-~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
.|+++|..++|+-.+...| -+.|+.++++..|. ..+++...++++++||.||+.+.|. .+..+.+.+ ....+|+
T Consensus 20 piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~Ds---GIs~~~i~~-f~~~iP~ 95 (223)
T KOG0026|consen 20 PIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDS---GISLQTVLE-LGPLVPL 95 (223)
T ss_pred CEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccc---cchHHHHHH-hCCCCce
Confidence 4899999999999999988 67899999988765 5677778899999999999987643 334444433 2457999
Q ss_pred EEeeHHHHHHHHHcCCEEeecC-cccceeee-EEEec--CCccccCCCCCceEEEEeeccCcc--ccCC-CCcEEEEEeC
Q 039743 85 LGICYGLQLMVQKLDGVVKVGE-KQEYGRME-ILVER--SSGIFGNKKVGHHQVVWMSHGDEA--VVLP-DGFEVVARSQ 157 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~-~~e~G~~~-v~~~~--~~~l~~~~~~~~~~~v~~~H~~~v--~~lp-~g~~vla~s~ 157 (531)
||||.|.|.|..+|||+|.+.+ .--+|... ++.+. +..+|+++++. +.|-.+|+-.. .++| +.++++|+++
T Consensus 96 fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~~~~G~f~g~~q~--~~V~RYHSLa~~~sSlP~d~L~VTawTE 173 (223)
T KOG0026|consen 96 FGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNP--FIVGRYHSLVIEKDSFPSDELEVTAWTE 173 (223)
T ss_pred eeeehhhhhhhhhhCcEEeccCcceeeccccccccCCccccccccCCCCC--eEEEeeeeeeeecccCCccceeeeEecc
Confidence 9999999999999999999875 22344332 43332 24699999999 99999998765 5788 7899999999
Q ss_pred CCcEEEEEECCCc-EEEEecCCCCCCCcccchhhhhheecccccccccc
Q 039743 158 QGAVAAVENREKR-LFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWK 205 (531)
Q Consensus 158 ~~~v~ai~~~~~~-i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~ 205 (531)
++.+++.+|+++. +-|+|||||.--++.|+.+++||+ ++.. +.|.
T Consensus 174 nG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNfl-ni~~--~tWe 219 (223)
T KOG0026|consen 174 DGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFI-KIVE--KKWS 219 (223)
T ss_pred CcEEEeeeccccccccceeecchhhhhhhhHHHHHHHH-Hhcc--cchh
Confidence 9999999998887 889999999999999999999998 6553 4554
|
|
| >PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-24 Score=199.68 Aligned_cols=166 Identities=22% Similarity=0.347 Sum_probs=113.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC---CCCChHHHHHHHHhCCCcE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD---APAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~---~~~~~~~l~~~~~~~~iPv 84 (531)
|+|+|||.++.+++.++++.+|+++.++... +++ .++|+|||||+.....+-. ...+. +.++. +.++|+
T Consensus 2 i~iidyg~gN~~s~~~al~~~g~~~~~v~~~---~~l--~~~D~lIlPG~g~~~~~~~~L~~~gl~-~~i~~--~~g~Pv 73 (192)
T PRK13142 2 IVIVDYGLGNISNVKRAIEHLGYEVVVSNTS---KII--DQAETIILPGVGHFKDAMSEIKRLNLN-AILAK--NTDKKM 73 (192)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEEeCH---HHh--ccCCEEEECCCCCHHHHHHHHHHCCcH-HHHHH--hCCCeE
Confidence 8999999999999999999999999887532 344 4689999999855111100 01122 33333 458999
Q ss_pred EEeeHHHHHHHHHc--C---------CEEeec----CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCC
Q 039743 85 LGICYGLQLMVQKL--D---------GVVKVG----EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDG 149 (531)
Q Consensus 85 LGIC~G~Qlla~~~--G---------G~v~~~----~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g 149 (531)
||||+|||+|++.. | ++|.+. +.+++||..++. ..++++ ..+++.|++.+. .++.
T Consensus 74 lGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~~~~--~~~l~~-------~~~yFVhSy~v~-~~~~ 143 (192)
T PRK13142 74 IGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVS--KHPMLN-------QDVYFVHSYQAP-MSEN 143 (192)
T ss_pred EEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCcccccccCC--CCcccc-------cEEEEECCCeEC-CCCC
Confidence 99999999999965 1 344443 224566665532 223332 368999999983 3343
Q ss_pred cEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 150 FEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 150 ~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
...++......+++++ ++++||+|||||.++ ..|.++++||+
T Consensus 144 v~~~~~yg~~~~~~v~--~~n~~g~QFHPEkS~-~~G~~ll~nf~ 185 (192)
T PRK13142 144 VIAYAQYGADIPAIVQ--FNNYIGIQFHPEKSG-TYGLQILRQAI 185 (192)
T ss_pred EEEEEECCCeEEEEEE--cCCEEEEecCcccCc-HhHHHHHHHHH
Confidence 3333333222455554 589999999999988 89999999997
|
|
| >PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6 | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-25 Score=215.79 Aligned_cols=196 Identities=28% Similarity=0.386 Sum_probs=143.2
Q ss_pred hhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEE
Q 039743 210 LDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286 (531)
Q Consensus 210 ~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd 286 (531)
++.+..+|++++.. .+++++++|||+||+|+|+|+++++| .+++||+++++..++.+.+++.+ +|+.||+++.++|
T Consensus 2 ~~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~-la~~lgi~~~~i~ 80 (242)
T PF02540_consen 2 IEALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKE-LAEKLGIEYIVID 80 (242)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHH-HHHHHTSEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHH-HHHHhCCCeeccc
Confidence 34555666666542 46899999999999999999999997 79999999999998888888877 9999999999999
Q ss_pred CchHHHHhhcCCCCcc---cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 287 ATDQFLSKLKGVIDPE---TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 287 ~~~~f~~~l~~~~~p~---~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
+++.+....+.+.... ...++..+.+..++...|.. .++++.||.. ..|. ..|+ .|+
T Consensus 81 i~~~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~--------~~~lVlgT~N--~sE~--~~Gy--------~T~ 140 (242)
T PF02540_consen 81 IDPIFDAFLKSLEPADDDLARGNIQARIRMTTLYALANK--------YNYLVLGTGN--KSEL--LLGY--------FTK 140 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HTEEEBE--C--HHHH--HHTC--------SHT
T ss_pred hHHHHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcc--------cceEEecCCc--HHHh--hcCc--------ccc
Confidence 9876644333221111 11222222333344555544 4578888843 2332 1344 788
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHH
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFI 438 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~ 438 (531)
|++++. .+.||.+|+|+||+++|+++|+|++++++.|+++ | ++|+.+++.|+-.+++.|.++.
T Consensus 141 ~GD~~~-------d~~Pi~~L~K~eV~~la~~l~ip~~ii~k~Psa~--L---~~gqtDE~elg~~Y~~lD~~l~ 203 (242)
T PF02540_consen 141 YGDGAG-------DIAPIADLYKTEVRELARYLGIPEEIIEKPPSAG--L---WPGQTDEDELGFSYEELDAILR 203 (242)
T ss_dssp TTTTSS-------SBETTTTS-HHHHHHHHHHTTCGHHHHCS--BHH--S---STT-BHHHHHTSTHHHHHHHHH
T ss_pred cCcccc-------cceeeCCcCHHHHHHHHHHHhhHHHHhcCCCCCC--C---CCCCCCHHHhCCCHHHHHHHHH
Confidence 888766 7899999999999999999999999999998765 3 6799999999659999999976
|
3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C .... |
| >cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-23 Score=198.18 Aligned_cols=183 Identities=25% Similarity=0.348 Sum_probs=143.5
Q ss_pred eeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccc
Q 039743 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRK 306 (531)
Q Consensus 227 vvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~ 306 (531)
|+|++|||+||+++++++++..+.+++++|+|+|+....+.+.+.+ +|+++|+++++++++......+.+ +....+.
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v~vd~g~~~~~~~~~~~~-~a~~lgi~~~~~~~~~~~~~~~~~--~~~~~~~ 77 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKR-LAKEIGIRHEVIETDELDDPEFAK--NPPDRCY 77 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCCcEEEEEeCCCCCCHHHHHHHHH-HHHHcCCcEEEEeCCccccHHHhc--CCCCccc
Confidence 6899999999999999999985569999999999987777777776 899999999999997432222221 2233444
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccc--cC
Q 039743 307 IIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLK--LL 384 (531)
Q Consensus 307 ~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~--~l 384 (531)
.+.+.+++.+.+.|++.| ++++++||+.+|..+. .+ ++.......+++||. .+
T Consensus 78 ~~r~~~~~~l~~~a~~~g------~~~I~~G~~~dD~~e~----~~---------------~~~~~~~~~iirPL~~~~~ 132 (202)
T cd01990 78 LCKKALYEALKEIAEELG------LDVVLDGTNADDLGDY----RP---------------GLKALRELGVRSPLAEAGL 132 (202)
T ss_pred hhHHHHHHHHHHHHHHCC------CCEEEEcCccccCccc----Ch---------------HHHHHHHcCCcCchhhcCC
Confidence 555667788888998887 8999999999998873 22 122222356999999 59
Q ss_pred CHHHHHHHHHHcCCCccccccCCCCCCCcccccc--CCCCcchHHHHHhhhhHHHHHHHHHcCc
Q 039743 385 FKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVL--GDVTEGNSLDILRQVDEIFIQSIKEAGL 446 (531)
Q Consensus 385 ~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~--g~vt~~~l~~~~~~~d~~~~~~l~~~~~ 446 (531)
+|+||+++|+++|+|. +..| +.+|++.|++ .++|++.+ +.++++|++ |+..|+
T Consensus 133 ~K~ei~~~a~~~gl~~---~~~~-~~~c~~~~~~~~~~~~~~~~-~~~~~~e~~----l~~~~~ 187 (202)
T cd01990 133 GKAEIRELARELGLPT---WDKP-AMACLASRIPYGTEITEERL-KKVEAAEEF----LRSLGF 187 (202)
T ss_pred CHHHHHHHHHHcCCCC---cCCC-CcchHHhhCcCCCCCCHHHH-HHHHHHHHH----HHHcCC
Confidence 9999999999999995 6777 6689999997 46799999 999999988 555554
|
Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus. |
| >cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=207.11 Aligned_cols=185 Identities=15% Similarity=0.199 Sum_probs=134.4
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC-----CcEEEeeHH
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG-----VYVLGICYG 90 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~-----iPvLGIC~G 90 (531)
..+++++++++|+.+..++.+.+.+++. ...+|||+++||+.++...........+++.+++.+ +|+||||+|
T Consensus 22 ~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG 101 (273)
T cd01747 22 AASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLG 101 (273)
T ss_pred HHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHH
Confidence 4569999999999988887764434432 467899999999977642221222356888887654 899999999
Q ss_pred HHHHHHHcCCEEee-cCc-ccceeeeEEEec---CCccccCCCCC------ceEEEEeeccCccc--cCC------CCcE
Q 039743 91 LQLMVQKLDGVVKV-GEK-QEYGRMEILVER---SSGIFGNKKVG------HHQVVWMSHGDEAV--VLP------DGFE 151 (531)
Q Consensus 91 ~Qlla~~~GG~v~~-~~~-~e~G~~~v~~~~---~~~l~~~~~~~------~~~~v~~~H~~~v~--~lp------~g~~ 151 (531)
||+|+.++||++.. ... .+.+..+++++. ++++|++++.. ....++++|++++. .+| ..++
T Consensus 102 ~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~ 181 (273)
T cd01747 102 FELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFN 181 (273)
T ss_pred HHHHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceE
Confidence 99999999997543 332 344557788775 46889888652 11468899999984 444 4578
Q ss_pred EEEEeCC--C--cEEEEEECCCcEEEEecCCCCCCCcccc--------------hhhhhheeccccccc
Q 039743 152 VVARSQQ--G--AVAAVENREKRLFGLQYHPEVTHSPEGM--------------ETLRYFLFDVCGVNA 202 (531)
Q Consensus 152 vla~s~~--~--~v~ai~~~~~~i~gvQFHPE~~~~~~g~--------------~i~~~F~~~~~~~~~ 202 (531)
++|.+.+ + .++++++.+.++||+|||||.+..+.+. +.+.+|+.+.|+.+.
T Consensus 182 vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~e~r~n~ 250 (273)
T cd01747 182 VLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKSN 250 (273)
T ss_pred EEEEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9998755 3 4689999888999999999977655432 337778878887764
|
Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-23 Score=199.32 Aligned_cols=171 Identities=18% Similarity=0.181 Sum_probs=123.6
Q ss_pred HHHHHHHHHCCCEEEEEeCCCCh-hcc----ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHH
Q 039743 19 HLITRRIRSLSILSLCLSGTCSL-DDI----TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQL 93 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~-~~~----~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Ql 93 (531)
..+..+..+++..+++.+.+.+. +.. .+.++||||++|||+..... -...+++.+.++++|+||||+|||+
T Consensus 21 ~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~~~~----~~~~~i~~~~~~~~PvlGIClG~Q~ 96 (235)
T cd01746 21 EALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRGVE----GKILAIKYARENNIPFLGICLGMQL 96 (235)
T ss_pred HHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCcchh----hHHHHHHHHHHCCceEEEEEhHHHH
Confidence 34445555566666665544321 111 14678999999999754322 1235677888889999999999999
Q ss_pred HHHHcCCEEeecCcc------------------------------cceeeeEEEecCCccccCCCCCceEEEEeeccCcc
Q 039743 94 MVQKLDGVVKVGEKQ------------------------------EYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA 143 (531)
Q Consensus 94 la~~~GG~v~~~~~~------------------------------e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v 143 (531)
|+.++||++.+.+.. +.|.+.+.+.+++.+.+-++.+ ...+.+.|++.|
T Consensus 97 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~-~~~~n~~H~~~v 175 (235)
T cd01746 97 AVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKD-EVEERHRHRYEV 175 (235)
T ss_pred HHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHHhCCC-EEEEecCccccc
Confidence 999999988753211 1124667777777776655544 368899999987
Q ss_pred c-----c-CCCCcEEEEEeC-CCcEEEEEECCCcEE-EEecCCCCCCCc-ccchhhhhhe
Q 039743 144 V-----V-LPDGFEVVARSQ-QGAVAAVENREKRLF-GLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 144 ~-----~-lp~g~~vla~s~-~~~v~ai~~~~~~i~-gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
. . +.++++++|.+. ++.|+|++.++.++| |+|||||....+ ....+|++|+
T Consensus 176 ~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 176 NPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred CHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence 3 3 378999999998 899999999888876 999999987543 3568999885
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th |
| >cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-23 Score=193.81 Aligned_cols=168 Identities=19% Similarity=0.243 Sum_probs=120.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCC-CChHHHHHHHHhCCCcEEE
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP-AFPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~-~~~~~l~~~~~~~~iPvLG 86 (531)
|.|+-+.+.+...+ ++++++|+++..+.... + ..++||||++||+.+.++.... ....+.++.+.++++|+||
T Consensus 1 igvl~~qg~~~e~~-~~l~~~g~~v~~v~~~~---~--l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlG 74 (183)
T cd01749 1 IGVLALQGDFREHI-RALERLGVEVIEVRTPE---D--LEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFG 74 (183)
T ss_pred CEEEEecCCcHHHH-HHHHHCCCeEEEECCHH---H--hccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEE
Confidence 45565655565444 99999999988876532 2 3568999999999866543111 1123456666778999999
Q ss_pred eeHHHHHHHHHcCC------------EEeecC-cccceeeeEEEecCCccccCCC-CCceEEEEeeccCccccCCCCcEE
Q 039743 87 ICYGLQLMVQKLDG------------VVKVGE-KQEYGRMEILVERSSGIFGNKK-VGHHQVVWMSHGDEAVVLPDGFEV 152 (531)
Q Consensus 87 IC~G~Qlla~~~GG------------~v~~~~-~~e~G~~~v~~~~~~~l~~~~~-~~~~~~v~~~H~~~v~~lp~g~~v 152 (531)
||+|||+|+.++|+ +|.+++ .++.|+...++ .+.+.+ +. +.++++|.+.|..+|+++++
T Consensus 75 iC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~~~~l-----~~~~~~~~~--~~~~~~h~~~v~~~p~~~~~ 147 (183)
T cd01749 75 TCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSFEADL-----DIPGLGLGP--FPAVFIRAPVIEEVGPGVEV 147 (183)
T ss_pred ECHHHHHHHHHhcccCCCCccCceeEEEEeeccccccceEEEcC-----CCCcCCCCc--cEEEEEECcEEEEcCCCcEE
Confidence 99999999999998 455432 22344333322 233442 45 89999999999999999999
Q ss_pred EEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 153 VARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 153 la~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+|+++.+++ |++. +++||+|||||++.. .++++.|+
T Consensus 148 la~~~~~~~-a~~~--~~~~g~qfHPE~~~~---~~~~~~f~ 183 (183)
T cd01749 148 LAEYDGKIV-AVRQ--GNVLATSFHPELTDD---TRIHEYFL 183 (183)
T ss_pred EEecCCEEE-EEEE--CCEEEEEcCCccCCC---cchhhhhC
Confidence 999988775 7774 479999999999864 46777764
|
Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6. |
| >TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=190.15 Aligned_cols=168 Identities=19% Similarity=0.280 Sum_probs=120.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC--CCCCChHHHHHHHHhCCCcE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP--DAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~--~~~~~~~~l~~~~~~~~iPv 84 (531)
||+|+.+.+.|.. ..++++++|++++++... +++ .++|+|||+||++++.+. ....+ ...++.+.++++|+
T Consensus 1 ~igvl~~qg~~~e-~~~~l~~~g~~~~~v~~~---~~l--~~~d~liipGG~~~~~~~l~~~~~l-~~~i~~~~~~g~pi 73 (184)
T TIGR03800 1 KIGVLALQGAVRE-HARALEALGVEGVEVKRP---EQL--DEIDGLIIPGGESTTLSRLLDKYGM-FEPLRNFILSGLPV 73 (184)
T ss_pred CEEEEEccCCHHH-HHHHHHHCCCEEEEECCh---HHh--ccCCEEEECCCCHHHHHHHHHhccH-HHHHHHHHHcCCcE
Confidence 4888888877754 669999999999887542 222 568999999998865332 11122 34456667789999
Q ss_pred EEeeHHHHHHHHHcC-----------CEEeecCc-ccceeeeEEEecCCccccCCC-CCceEEEEeeccCccccCCCCcE
Q 039743 85 LGICYGLQLMVQKLD-----------GVVKVGEK-QEYGRMEILVERSSGIFGNKK-VGHHQVVWMSHGDEAVVLPDGFE 151 (531)
Q Consensus 85 LGIC~G~Qlla~~~G-----------G~v~~~~~-~e~G~~~v~~~~~~~l~~~~~-~~~~~~v~~~H~~~v~~lp~g~~ 151 (531)
||||+|||+|++++. +++.++.. ++.|.....++. +++. +. +..+++|.+.|..+|++++
T Consensus 74 lGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~~~~l~~-----~~~~~~~--~~~~~~h~~~v~~lp~~~~ 146 (184)
T TIGR03800 74 FGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGRQVDSFEAEVDI-----KGVGDDP--ITGVFIRAPKIVSVGNGVE 146 (184)
T ss_pred EEECHHHHHHHhhhccCCCCccCcEEEEEEeeccCCccccEEEEeec-----ccCCCCc--ceEEEEcCCCcccCCCCeE
Confidence 999999999999973 45555432 233333333321 2222 23 7788999999999999999
Q ss_pred EEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 152 VVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 152 vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++|+++++.+ |++. +++||+|||||+++. .++++.|+
T Consensus 147 vla~~~~~~~-a~~~--~~~~gvQfHPE~~~~---~~~~~~f~ 183 (184)
T TIGR03800 147 ILAKVGNRIV-AVRQ--GNILVSSFHPELTDD---HRVHEYFL 183 (184)
T ss_pred EEEEeCCeeE-EEEe--CCEEEEEeCCccCCC---chHHHHhh
Confidence 9999988764 6553 479999999999854 47888886
|
Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase. |
| >TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-22 Score=207.40 Aligned_cols=190 Identities=21% Similarity=0.235 Sum_probs=141.8
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCCh-hHHHHHHHHHHHhC---C--CcEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRY-KERERVMDTFEKDL---H--LPVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~-~e~~~~~~~la~~l---g--i~~~vvd~~~~f~~~ 294 (531)
++..+++++++|||+||+|+++++++. |.+++++|+|+|.... .+.+.+.+ +|+.+ + +++.++|+.+.+. .
T Consensus 169 ~g~~~kvlvllSGGiDS~vaa~ll~kr-G~~V~av~~~~~~~~~~~~~~~v~~-l~~~l~~~~~~~~l~~v~~~~~~~-~ 245 (371)
T TIGR00342 169 VGTQGKVLALLSGGIDSPVAAFMMMKR-GCRVVAVHFFNEPAASEKAREKVER-LANSLNETGGSVKLYVFDFTDVQE-E 245 (371)
T ss_pred cCcCCeEEEEecCCchHHHHHHHHHHc-CCeEEEEEEeCCCCccHHHHHHHHH-HHHHHhhcCCCceEEEEeCHHHHH-H
Confidence 456789999999999999999999987 9999999999987654 44444444 78766 3 5888899876543 3
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
+....++...|..|.+.|++++..+|++.| ++.|++||+.+|+.+. +..|+.++....+
T Consensus 246 i~~~~~~~~~cv~cRr~m~~~a~~~A~~~g------~~~I~tG~~l~d~asq---------------tl~nl~~i~~~~~ 304 (371)
T TIGR00342 246 IIHIIPEGYTCVLCRRMMYKAASKVAEKEG------CLAIVTGESLGQVASQ---------------TLENLRVIQAVSN 304 (371)
T ss_pred HHhcCCCCceeHhHHHHHHHHHHHHHHHcC------CCEEEEccChHhhhcc---------------HHHHHHHHhccCC
Confidence 322223334444455557788889999888 8999999999998642 2233333333345
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHH
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~ 437 (531)
..+++||..++|+||+++|+++|+.+ ++..|+..||...+..-++|++++ +.++++|+.+
T Consensus 305 ~~I~rPLi~~~K~EIi~~a~~iG~~~--~s~~~~~~c~~~~~~~~p~t~~~~-~~i~~~E~~l 364 (371)
T TIGR00342 305 TPILRPLIGMDKEEIIELAKEIGTYE--ISIEPHEDCCTIFKPKHPTTKAKP-EKVEKLEEKL 364 (371)
T ss_pred CCEEeCCCCCCHHHHHHHHHHhCCcc--eeecCCCceeEeecCCCCccCCCH-HHHHHHHhcC
Confidence 67999999999999999999999653 455676777775555577899999 8888887764
|
The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis. |
| >PRK13980 NAD synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-22 Score=199.72 Aligned_cols=204 Identities=25% Similarity=0.333 Sum_probs=148.8
Q ss_pred ccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcE
Q 039743 206 LENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPV 282 (531)
Q Consensus 206 ~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~ 282 (531)
.+...+.+...+++++.. .++++|++|||+||+++++++.+++| .++++++++++..+..+.+.+.+ +|+.+|+++
T Consensus 10 ~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~~~~~~~a~~-la~~lgi~~ 88 (265)
T PRK13980 10 YEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAEL-VAEDLGIEY 88 (265)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCCHHHHHHHHH-HHHHhCCCe
Confidence 344456667777777653 36899999999999999999999987 79999999999877777777776 899999999
Q ss_pred EEEECchHHHHhhcCCCC--cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccc
Q 039743 283 TCVDATDQFLSKLKGVID--PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360 (531)
Q Consensus 283 ~vvd~~~~f~~~l~~~~~--p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~i 360 (531)
+++++++.+..-...+.+ +...+.++.+.++.++..+|++.| + ++.||...+ | ...|+
T Consensus 89 ~~i~i~~~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g------~--lvlgTgn~s--E--~~~G~-------- 148 (265)
T PRK13980 89 KVIEITPIVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANREN------R--LVLGTGNKS--E--LLLGY-------- 148 (265)
T ss_pred EEEECHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcC------C--EEEcCCCHh--H--HHhCC--------
Confidence 999998543222222211 112234555556667788888765 3 455553221 1 11233
Q ss_pred ccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHH
Q 039743 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQS 440 (531)
Q Consensus 361 kt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~ 440 (531)
.|.+++++. .++||.+|+|+|||++|+++|+|++++.+.|+++ | .+|+.+++.++-.++..|.++...
T Consensus 149 ~t~~gD~~~-------~l~Pl~~l~K~eV~~la~~lgip~~i~~k~psa~--L---~~~q~De~~lg~~Y~~lD~~l~~~ 216 (265)
T PRK13980 149 FTKYGDGAV-------DLNPIGDLYKTQVRELARHLGVPEDIIEKPPSAD--L---WEGQTDEGELGFSYETIDEILYLL 216 (265)
T ss_pred ccCCCCccc-------CcccCCCCcHHHHHHHHHHHCchHHHhCCCCCcC--C---CCCCCCHHHcCCCHHHHHHHHHHH
Confidence 456666544 6899999999999999999999988888877664 4 369999999965899999997654
Q ss_pred HH
Q 039743 441 IK 442 (531)
Q Consensus 441 l~ 442 (531)
+.
T Consensus 217 ~~ 218 (265)
T PRK13980 217 FD 218 (265)
T ss_pred HH
Confidence 43
|
|
| >PRK01565 thiamine biosynthesis protein ThiI; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-22 Score=208.61 Aligned_cols=188 Identities=18% Similarity=0.253 Sum_probs=140.4
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCC-CCChhHHHHHHHHHHHhCC-----CcEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNG-LLRYKERERVMDTFEKDLH-----LPVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g-~~~~~e~~~~~~~la~~lg-----i~~~vvd~~~~f~~~ 294 (531)
++..+++++++|||+||+|+|+++++. |.+++++|+++. +.++.+.+.+.+ +|+.++ ++++++|+++.. ..
T Consensus 173 ~g~~gkvvvllSGGiDS~vaa~l~~k~-G~~v~av~~~~~~~~~~~~~~~~~~-~a~~l~~~~~~i~~~vv~~~~~~-~~ 249 (394)
T PRK01565 173 VGTSGKALLLLSGGIDSPVAGYLAMKR-GVEIEAVHFHSPPYTSERAKEKVID-LARILAKYGGRIKLHVVPFTEIQ-EE 249 (394)
T ss_pred cCCCCCEEEEECCChhHHHHHHHHHHC-CCEEEEEEEeCCCCCcHHHHHHHHH-HHHHHHHhcCCCcEEEEECHHHH-HH
Confidence 566789999999999999999999886 999999999763 344455555554 677664 999999998754 33
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
+.....+...+..+.+.|++++..+|++.| ++.|++|++.+|+.+ .+..|+.++....+
T Consensus 250 i~~~~~~~~~~v~~Rr~~~~~a~~~A~~~g------~~~IvtG~~~~d~~s---------------qt~~~l~~i~~~~~ 308 (394)
T PRK01565 250 IKKKVPESYLMTLMRRFMMRIADKIAEKRG------ALAIVTGESLGQVAS---------------QTLESMYAINAVTN 308 (394)
T ss_pred HhhcCCCceEEEeHHHHHHHHHHHHHHHcC------CCEEEEccccccccH---------------HHHHHHHHHhhccC
Confidence 332221212244566668888899999888 899999999999853 11222223333345
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccc-c-CCCCcchHHHHHhhhhHHH
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRV-L-GDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~-~-g~vt~~~l~~~~~~~d~~~ 437 (531)
+.+++||..++|+||+++|+++|+++ +|..|...|| +|+ + .++|++++ +.++++|+.+
T Consensus 309 ~~V~rPLig~~K~EI~~lAr~iG~~~--~s~~p~~~cc--~~~~~~~p~t~~~l-~~v~~~E~~l 368 (394)
T PRK01565 309 LPVLRPLIGMDKEEIIEIAKEIGTYD--ISILPYEDCC--TIFAPKNPKTKPKL-EKAEKYESRL 368 (394)
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCHH--HhcCCCcCee--eeecCCCCccCCCH-HHHHHHHhcC
Confidence 78999999999999999999999854 4677856555 688 4 56899999 9999988775
|
|
| >PTZ00323 NAD+ synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-22 Score=196.36 Aligned_cols=220 Identities=16% Similarity=0.064 Sum_probs=155.4
Q ss_pred ccccccccccccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhCC-c-----EEEEEEeCCCCChhHH
Q 039743 196 DVCGVNAGWKLENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIGD-R-----LHCVFVDNGLLRYKER 267 (531)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g~-~-----v~~v~id~g~~~~~e~ 267 (531)
+..+.++.|++..+++.+...|++++.. .++++||+|||+||+++|+++++++|. + ++++..+. ..+..+.
T Consensus 16 ~~~~~~~~~~~~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~-~ss~~~~ 94 (294)
T PTZ00323 16 KEVRRKRAFNPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPI-HSSAWAL 94 (294)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCC-CCCHHHH
Confidence 5557899999999999999999998764 579999999999999999999999985 2 45555553 2355677
Q ss_pred HHHHHHHHHhCCCcEEEEECchHHHHh---hcCCCCcccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEEEecc-c
Q 039743 268 ERVMDTFEKDLHLPVTCVDATDQFLSK---LKGVIDPETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYLVQGT-L 339 (531)
Q Consensus 268 ~~~~~~la~~lgi~~~vvd~~~~f~~~---l~~~~~p~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l~~Gt-~ 339 (531)
+++.+ +|+.+|++++++|+++.+... +.............++. +......+|.... ..+...|+.|| |
T Consensus 95 ~~A~~-la~~lGi~~~~idi~~l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~---~~g~~~lV~GT~N 170 (294)
T PTZ00323 95 NRGRE-NIQACGATEVTVDQTEIHTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLS---QEGTPAVVMGTGN 170 (294)
T ss_pred HHHHH-HHHHhCCcEEEEECcHHHHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHh---hcCCCeEEECCCC
Confidence 77776 899999999999999766222 21110000000001111 1122233333222 12367999999 8
Q ss_pred CCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccC
Q 039743 340 YPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLG 419 (531)
Q Consensus 340 ~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g 419 (531)
.+|... .|. +|.++++.. .+.|+.+++|+|||++|+++|+|+++ +..| |.|||. .|
T Consensus 171 ~sE~~~----~Gy--------~t~~GDg~~-------d~~pia~L~K~eVr~LAr~l~lp~~i-~~kp-pSA~L~---~~ 226 (294)
T PTZ00323 171 FDEDGY----LGY--------FCKAGDGVV-------DVQLISDLHKSEVFLVARELGVPENT-LQAA-PSADLW---EG 226 (294)
T ss_pred chhhhH----hch--------HhhcCCCCc-------CchhhcCCcHHHHHHHHHHcCCCHHH-hcCC-CCcCcC---CC
Confidence 887532 233 677777655 77999999999999999999999664 5556 677884 68
Q ss_pred CCCcchHHHHHhhhhHHHHHHHHHc
Q 039743 420 DVTEGNSLDILRQVDEIFIQSIKEA 444 (531)
Q Consensus 420 ~vt~~~l~~~~~~~d~~~~~~l~~~ 444 (531)
+.+++.++-.++..|.++...++..
T Consensus 227 qtDE~elg~~Y~~lD~~~~~~~~~~ 251 (294)
T PTZ00323 227 QTDEDELGFPYDFVELYTEWYLKLN 251 (294)
T ss_pred CcCHhhcCCCHHHHHHHHHHHHHhh
Confidence 9999999558888888876655543
|
|
| >cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-22 Score=194.98 Aligned_cols=203 Identities=23% Similarity=0.312 Sum_probs=149.7
Q ss_pred chhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 208 NVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 208 ~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
...+.+...|++++.. .++++|++|||+||+++|+++++++| .++++++++++..+..+.+.+.+ +|+.+|+++++
T Consensus 5 ~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~-~a~~lgi~~~~ 83 (248)
T cd00553 5 EIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKE-LAEALGIEHVN 83 (248)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHH-HHHHhCCeEEE
Confidence 3445566667777632 36899999999999999999999987 89999999999877778877776 89999999999
Q ss_pred EECchHHHHhhcCCC---Ccc----cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcc
Q 039743 285 VDATDQFLSKLKGVI---DPE----TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHS 357 (531)
Q Consensus 285 vd~~~~f~~~l~~~~---~p~----~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~ 357 (531)
+++++.+......+. .+. ..+.++.+.++.++...|++.| +..+.+|+ ..|. +.|.
T Consensus 84 i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~------~~vlgTgn----~~E~--~~G~----- 146 (248)
T cd00553 84 IDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLG------GLVLGTGN----KSEL--LLGY----- 146 (248)
T ss_pred eccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcC------CEEEcCCc----HhHH--HhCC-----
Confidence 999876544332221 111 2244444555567788888776 55555554 3342 1233
Q ss_pred cccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHH
Q 039743 358 HTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 358 ~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~ 437 (531)
.|.++.++ ..++||.+++|+|||++|+++|+|+.++.+.|+++ | .+|+.+++.++-.+...|.++
T Consensus 147 ---~t~~gd~~-------~~i~Pl~~l~K~eV~~la~~~~ip~~i~~k~psa~--l---~~~q~de~~lg~~Y~~lD~~l 211 (248)
T cd00553 147 ---FTKYGDGA-------ADINPIGDLYKTQVRELARYLGVPESIIDKPPSAE--L---WPGQTDEDELGMPYEELDQFL 211 (248)
T ss_pred ---eeccCCcc-------cCccccCCCcHHHHHHHHHHHCchHHHhcCCCCcc--c---CCCCCCHHHhCCCHHHHHHHH
Confidence 34455433 38899999999999999999999998888888765 3 459999999955899999997
Q ss_pred HHHHHH
Q 039743 438 IQSIKE 443 (531)
Q Consensus 438 ~~~l~~ 443 (531)
...+.+
T Consensus 212 ~~~~~~ 217 (248)
T cd00553 212 YLRLEG 217 (248)
T ss_pred HHHHhc
Confidence 655543
|
The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source . |
| >TIGR00337 PyrG CTP synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=205.96 Aligned_cols=183 Identities=19% Similarity=0.214 Sum_probs=126.0
Q ss_pred CEEEEE----eCCCCcHHHHHHHHHHCCC--EEEEEeCCCChhccc------cCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 6 ELVLIL----DYGSQYTHLITRRIRSLSI--LSLCLSGTCSLDDIT------AKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 6 ~~I~Il----D~G~~~~~~i~r~l~~~G~--~~~v~~~~~~~~~~~------~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
-+|+++ +..+.| .++.++|+.+|+ .+.+.+...+.+++. +.++|||+|||||++...+. ....
T Consensus 290 v~IalVGKY~~~~daY-~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g----~i~a 364 (525)
T TIGR00337 290 VTIGIVGKYVELKDSY-LSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGVEG----KILA 364 (525)
T ss_pred cEEEEEeCCcCCHHHH-HHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhhcC----hHHH
Confidence 468888 334556 588999999886 232333222222221 35689999999998644321 2356
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecC------------------------------cccceeeeEEEecCCcc
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQKLDGVVKVGE------------------------------KQEYGRMEILVERSSGI 123 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~------------------------------~~e~G~~~v~~~~~~~l 123 (531)
++++.++++|+||||+|||+|+.++|++|.... ....|.+.+.+.+++.+
T Consensus 365 i~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L 444 (525)
T TIGR00337 365 IKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLA 444 (525)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCChH
Confidence 788888999999999999999999988766521 01345667777777766
Q ss_pred ccCCCCCceEEEEeeccCcccc-----C-CCCcEEEEEeCC-CcEEEEEECCCcEE-EEecCCCCCCCc-ccchhhhhhe
Q 039743 124 FGNKKVGHHQVVWMSHGDEAVV-----L-PDGFEVVARSQQ-GAVAAVENREKRLF-GLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 124 ~~~~~~~~~~~v~~~H~~~v~~-----l-p~g~~vla~s~~-~~v~ai~~~~~~i~-gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
.+-++.. .....+.|++.|.. + .+|+++.|.++| +.++|++.++.+++ |+|||||....+ ....+|+.|+
T Consensus 445 ~~iyG~~-~i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV 523 (525)
T TIGR00337 445 FKLYGKE-EVYERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFV 523 (525)
T ss_pred HHHhCCC-ceeecccceEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHH
Confidence 6555443 12333444444421 1 379999999988 58999999888865 999999987544 4578999997
|
CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). |
| >PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-21 Score=183.47 Aligned_cols=184 Identities=20% Similarity=0.289 Sum_probs=135.5
Q ss_pred EEEEEeCCCCcH-HHHHHHHH-HCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC--CC---CCChHHHHHHHHh
Q 039743 7 LVLILDYGSQYT-HLITRRIR-SLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP--DA---PAFPAGFLEWALS 79 (531)
Q Consensus 7 ~I~IlD~G~~~~-~~i~r~l~-~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~--~~---~~~~~~l~~~~~~ 79 (531)
+|+||+|+++++ ..+.++++ .+|+++..++.+.. + ..++|+||||||++..... .. .....+.++.+.+
T Consensus 2 ~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~--~--l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~ 77 (219)
T PRK03619 2 KVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKET--D--LDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAE 77 (219)
T ss_pred EEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcC--C--CCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHH
Confidence 699999998885 55899999 89999888865431 2 3578999999997631100 00 0112345556677
Q ss_pred CCCcEEEeeHHHHHHHHH--cCCEEeecCcccc--eeeeEEEec-CCccccCCCCCceEEEEeeccCcc--------ccC
Q 039743 80 NGVYVLGICYGLQLMVQK--LDGVVKVGEKQEY--GRMEILVER-SSGIFGNKKVGHHQVVWMSHGDEA--------VVL 146 (531)
Q Consensus 80 ~~iPvLGIC~G~Qlla~~--~GG~v~~~~~~e~--G~~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~~v--------~~l 146 (531)
+++|++|||.|+|+|+++ ++|++.++...+| +|..+++.+ ++++++++.....+.++..|++.. ..+
T Consensus 78 ~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l 157 (219)
T PRK03619 78 KGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRL 157 (219)
T ss_pred CCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEEEEEEEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHH
Confidence 899999999999999997 9999999888888 566666654 468888885543466777898763 445
Q ss_pred C-CCcEEEEEe---CCC---cEEEEEECCCcEEEEecCCCCCCC-----cccchhhhhhe
Q 039743 147 P-DGFEVVARS---QQG---AVAAVENREKRLFGLQYHPEVTHS-----PEGMETLRYFL 194 (531)
Q Consensus 147 p-~g~~vla~s---~~~---~v~ai~~~~~~i~gvQFHPE~~~~-----~~g~~i~~~F~ 194 (531)
. .++.++..+ +++ .|+++.++.++++|+|||||+... ..|..||++|+
T Consensus 158 ~~~~~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v 217 (219)
T PRK03619 158 EGNGQVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLL 217 (219)
T ss_pred HhCCcEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCccccCccCCCcCHHHHHHHh
Confidence 3 355544444 555 578888777899999999999843 58999999997
|
|
| >PRK06186 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-21 Score=184.88 Aligned_cols=184 Identities=16% Similarity=0.062 Sum_probs=123.3
Q ss_pred EEEEE----eCCCCcHHHHHHHHHH----CCCEEEEEeCCCC-hhc-cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHH
Q 039743 7 LVLIL----DYGSQYTHLITRRIRS----LSILSLCLSGTCS-LDD-ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEW 76 (531)
Q Consensus 7 ~I~Il----D~G~~~~~~i~r~l~~----~G~~~~v~~~~~~-~~~-~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~ 76 (531)
+|+++ ++.+.|. ++..+|+. .+..+.+.+.+.. +++ -.+.++|||+++||.+..--+ -....+++
T Consensus 3 ~IalVGKY~~~~daY~-Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~rg~~----Gki~ai~~ 77 (229)
T PRK06186 3 RIALVGDYNPDVTAHQ-AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYRNDD----GALTAIRF 77 (229)
T ss_pred EEEEEECCcCCcHHHH-HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcccHh----HHHHHHHH
Confidence 57777 3334443 45566665 4566666665432 211 125688999999998742211 13467899
Q ss_pred HHhCCCcEEEeeHHHHHHHHHcCCEEeec---Ccccc------------------eeeeEEEecCCccccCCCCCceE--
Q 039743 77 ALSNGVYVLGICYGLQLMVQKLDGVVKVG---EKQEY------------------GRMEILVERSSGIFGNKKVGHHQ-- 133 (531)
Q Consensus 77 ~~~~~iPvLGIC~G~Qlla~~~GG~v~~~---~~~e~------------------G~~~v~~~~~~~l~~~~~~~~~~-- 133 (531)
|+++++|+||||+|||++...+...+... ...|+ ..+.+.+.+++.+.+-+... .+
T Consensus 78 Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~l~~~S~l~~iyg~~-~i~e 156 (229)
T PRK06186 78 ARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIRLRPGSLIARAYGTL-EIEE 156 (229)
T ss_pred HHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEEECCCCHHHHHhCCC-eeee
Confidence 99999999999999998777665554321 00011 12567777777665555433 12
Q ss_pred ------EEEeeccCccccCCCCcEEEEEeCCCcEEEEEECCCc-EEEEecCCCCCCCc-ccchhhhhheecccc
Q 039743 134 ------VVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKR-LFGLQYHPEVTHSP-EGMETLRYFLFDVCG 199 (531)
Q Consensus 134 ------~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~~~~~-i~gvQFHPE~~~~~-~g~~i~~~F~~~~~~ 199 (531)
.|+..|.+.+. .+|+++.|.++|+.++|++.++.+ ++|+|||||+...+ ....+|+.|+ +.|.
T Consensus 157 rhrHryeVNs~h~q~i~--~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv-~aa~ 227 (229)
T PRK06186 157 GYHCRYGVNPEFVAALE--SGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFL-RAAR 227 (229)
T ss_pred eccccEEECHHHHHHHh--cCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHH-HHHh
Confidence 35555666654 889999999999999999988776 67999999986533 4568999998 5553
|
|
| >TIGR00552 nadE NAD+ synthetase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-21 Score=190.06 Aligned_cols=196 Identities=22% Similarity=0.286 Sum_probs=144.3
Q ss_pred hhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC-ChhHHHHHHHHHHHhCCCcEEEEEC
Q 039743 211 DEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL-RYKERERVMDTFEKDLHLPVTCVDA 287 (531)
Q Consensus 211 ~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~-~~~e~~~~~~~la~~lgi~~~vvd~ 287 (531)
++..+.|++.+.. .++|+||+|||+||+++|+++.++.+.++++++++++.. +..+.+.+.+ +|+.+|++++++++
T Consensus 7 ~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~-~a~~lgi~~~~i~i 85 (250)
T TIGR00552 7 EEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALA-LAEPLGINYKNIDI 85 (250)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHH-HHHHhCCeEEEEcc
Confidence 3344445554432 468999999999999999999998777899999998864 4556667665 89999999999999
Q ss_pred chHHHHh---hcCC-CCcc--cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccc
Q 039743 288 TDQFLSK---LKGV-IDPE--TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIK 361 (531)
Q Consensus 288 ~~~f~~~---l~~~-~~p~--~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ik 361 (531)
++.+... .... .+.. .++.+|++.++..+...|++.| +.+|++||+..+.. |. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g------~~~laTgh~~E~~~------G~--------~ 145 (250)
T TIGR00552 86 APIAASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHN------LLVLGTGNKSELML------GY--------F 145 (250)
T ss_pred hHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcC------CEEEcCCcHHHHhh------CC--------e
Confidence 8766421 1111 1111 2345666667778899999888 79999999765432 32 2
Q ss_pred cccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHH
Q 039743 362 SHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQ 439 (531)
Q Consensus 362 t~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~ 439 (531)
|.++.++ ..++||.+++|+||+++|+.+|+|..++.+.|+ +|| ++|+.+++.++-.+...|.++..
T Consensus 146 t~~gd~~-------~~i~PL~~l~K~eV~~lA~~~g~p~~i~~k~ps--a~L---~~~q~de~~~g~~y~~~D~~l~~ 211 (250)
T TIGR00552 146 TKYGDGG-------CDIAPIGDLFKTQVYELAKRLNVPERIIEKPPT--ADL---FDGQTDETELGITYDELDDYLKG 211 (250)
T ss_pred ecccCCc-------cCccccCCCcHHHHHHHHHHHCccHHHhCCCCC--cCC---CCCCcCHHHhCcCHHHHHHHHHH
Confidence 3333322 378999999999999999999999877666554 445 57999999998889999999743
|
NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity. |
| >PRK00768 nadE NAD synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-21 Score=188.33 Aligned_cols=207 Identities=24% Similarity=0.204 Sum_probs=151.2
Q ss_pred cccccccccchhhhhhhhhhccccCc--cceeeccCCCCCHHHHHHHHHHHhC-Cc---------EEEEEEeCCCCChhH
Q 039743 199 GVNAGWKLENVLDEEVKCIKDTVGLE--DHVICALSGGVDSTVAATLVHKAIG-DR---------LHCVFVDNGLLRYKE 266 (531)
Q Consensus 199 ~~~~~w~~~~~~~~~~~~i~~~v~~~--~kvvvalSGGvDS~v~a~l~~k~~g-~~---------v~~v~id~g~~~~~e 266 (531)
+..++.+++..++..+.+|++++.+. +++++++|||+||+|+|+|+.++++ .+ ++++.++... ...
T Consensus 11 ~~~~~~~~~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~--~~~ 88 (268)
T PRK00768 11 GVKPTIDPEEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGV--QAD 88 (268)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCC--cCC
Confidence 55667777888888889999987543 6899999999999999999999986 44 7888887532 333
Q ss_pred HHHHHHHHHHhCCC-cEEEEECchHHHHhhcCCCC--cccccchhhHHHHH----HHHHHHHHhhhhcCCCCcEEEeccc
Q 039743 267 RERVMDTFEKDLHL-PVTCVDATDQFLSKLKGVID--PETKRKIIGKEFIC----IFDAFAHDLEQKLGKKPAYLVQGTL 339 (531)
Q Consensus 267 ~~~~~~~la~~lgi-~~~vvd~~~~f~~~l~~~~~--p~~kr~~~~~~~~~----~~~~~a~~~g~~~~~~~~~l~~Gt~ 339 (531)
.+.+.. +|+.+|+ ++.++++++.+..-+..+.. .+......+|...| +++.+|. ....++.||.
T Consensus 89 ~~da~~-la~~lgi~~~~~i~I~~~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An--------~~~~lvlgT~ 159 (268)
T PRK00768 89 EDDAQD-ALAFIQPDRVLTVNIKPAVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAG--------ATGGLVVGTD 159 (268)
T ss_pred HHHHHH-HHHhcCCCeeEEEECHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHc--------cCCCEEEcCC
Confidence 455554 8999999 79999998654333221111 11112233444433 4444443 3456888885
Q ss_pred CCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccC
Q 039743 340 YPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLG 419 (531)
Q Consensus 340 ~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g 419 (531)
.-+ | ...|+ .|+|++++. .+.|+.+++|.|||++|+++|+|+.++.+ | |.+||..|.+|
T Consensus 160 N~s--E--~~~Gy--------~TkyGD~~~-------d~~pi~~L~KteV~~La~~l~vP~~ii~k-~-Psa~L~~~~~g 218 (268)
T PRK00768 160 HAA--E--AVTGF--------FTKFGDGGA-------DILPLFGLNKRQGRALLAALGAPEHLYEK-V-PTADLEDDRPG 218 (268)
T ss_pred ccc--H--HHhCc--------eeccCCccc-------cchhhcCCcHHHHHHHHHHhCCCHHHhcC-C-CCCCcCCCCCC
Confidence 443 3 22455 788998877 89999999999999999999999876544 5 67889999999
Q ss_pred CCCcchHHHHHhhhhHHH
Q 039743 420 DVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 420 ~vt~~~l~~~~~~~d~~~ 437 (531)
+.+++.++..++..|.++
T Consensus 219 q~DE~~lg~~Y~~lD~~L 236 (268)
T PRK00768 219 LPDEVALGVTYDQIDDYL 236 (268)
T ss_pred CCChhhcCCCHHHHHHHH
Confidence 999999966799999985
|
|
| >KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-21 Score=175.37 Aligned_cols=164 Identities=23% Similarity=0.287 Sum_probs=126.4
Q ss_pred CCcHHHHHHHHHHCCCEEEEEeCC-CCh-hccccCCCCEEEEcCCCCCCCCCCCCCChH--HHHHHHHhCCCcEEEeeHH
Q 039743 15 SQYTHLITRRIRSLSILSLCLSGT-CSL-DDITAKNPRVVILSGGPHSVHSPDAPAFPA--GFLEWALSNGVYVLGICYG 90 (531)
Q Consensus 15 ~~~~~~i~r~l~~~G~~~~v~~~~-~~~-~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~--~l~~~~~~~~iPvLGIC~G 90 (531)
++|.......+.+-|........- -.. ++-.+.+|+|++|||+..+.+++ .+|+.+ .+++......+||||||+|
T Consensus 24 Ggy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d-~dWI~KLcs~~kkld~mkkkvlGICFG 102 (245)
T KOG3179|consen 24 GGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSD-ADWIKKLCSFVKKLDFMKKKVLGICFG 102 (245)
T ss_pred cCHHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCccccccc-chHHHHHHHHHHHHHhhccceEEEecc
Confidence 356677788888888776655421 111 11114679999999999988874 577653 4455555567999999999
Q ss_pred HHHHHHHcCCEEeecCcc-cceeeeEEEecC----CccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEE
Q 039743 91 LQLMVQKLDGVVKVGEKQ-EYGRMEILVERS----SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE 165 (531)
Q Consensus 91 ~Qlla~~~GG~v~~~~~~-e~G~~~v~~~~~----~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~ 165 (531)
||++|++.||+|.+++++ +.+...+++.+. ...|..++.. +.+...|.|.|.++|++++++|+|+.|.++.+.
T Consensus 103 HQiiara~Gg~Vgra~KG~~~~lg~itivk~~~~~~~yFG~~~~~--l~IikcHqDevle~PE~a~llasSe~ceve~fs 180 (245)
T KOG3179|consen 103 HQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGEIPKS--LNIIKCHQDEVLELPEGAELLASSEKCEVEMFS 180 (245)
T ss_pred HHHHHHhhCCccccCCCCCcccccceEEEEecccchhhcccchhh--hhHHhhcccceecCCchhhhhccccccceEEEE
Confidence 999999999999998654 555555555422 2567767777 888899999999999999999999999999998
Q ss_pred ECCCcEEEEecCCCCCC
Q 039743 166 NREKRLFGLQYHPEVTH 182 (531)
Q Consensus 166 ~~~~~i~gvQFHPE~~~ 182 (531)
. +++++++|.|||++.
T Consensus 181 ~-~~~~l~fQGHPEyn~ 196 (245)
T KOG3179|consen 181 I-EDHLLCFQGHPEYNK 196 (245)
T ss_pred e-cceEEEecCCchhhH
Confidence 4 678999999999875
|
|
| >PRK05380 pyrG CTP synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=199.73 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=126.6
Q ss_pred EEEEE-eC---CCCcHHHHHHHHHHCC----CEEEEEeCCCCh-hc----cccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 7 LVLIL-DY---GSQYTHLITRRIRSLS----ILSLCLSGTCSL-DD----ITAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 7 ~I~Il-D~---G~~~~~~i~r~l~~~G----~~~~v~~~~~~~-~~----~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|+++ +| -+.| .++.++|+.+| ..+.+.+.+... ++ -.+.++||||||||++....+ -...+
T Consensus 290 ~IalVGKY~~l~DaY-~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~~~----g~i~~ 364 (533)
T PRK05380 290 TIALVGKYVELPDAY-KSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERGIE----GKILA 364 (533)
T ss_pred EEEEEeCccCCcHHH-HHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccccc----cHHHH
Confidence 58888 33 2334 46777777665 455665554321 11 115679999999998753222 23467
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHHHcCCEEee--cC-c---------------------------ccceeeeEEEecCCcc
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQKLDGVVKV--GE-K---------------------------QEYGRMEILVERSSGI 123 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~--~~-~---------------------------~e~G~~~v~~~~~~~l 123 (531)
++.+.++++|+||||+|||+|+.++||+|.. .. . ...|.+.+.+.+++.+
T Consensus 365 i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~gS~l 444 (533)
T PRK05380 365 IRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLA 444 (533)
T ss_pred HHHHHHCCCcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCCChH
Confidence 7888889999999999999999999999831 10 0 1234566777667666
Q ss_pred ccCCCCCc-------eEEEEeeccCccccCCCCcEEEEEeCC-CcEEEEEECCCcEE-EEecCCCCCCCc-ccchhhhhh
Q 039743 124 FGNKKVGH-------HQVVWMSHGDEAVVLPDGFEVVARSQQ-GAVAAVENREKRLF-GLQYHPEVTHSP-EGMETLRYF 193 (531)
Q Consensus 124 ~~~~~~~~-------~~~v~~~H~~~v~~lp~g~~vla~s~~-~~v~ai~~~~~~i~-gvQFHPE~~~~~-~g~~i~~~F 193 (531)
.+-++... .+.|+..|.+.+.+ .|+++.|.+++ +.++|++.+++++| |+|||||+...+ .+..+|++|
T Consensus 445 ~~iyg~~~i~ErhrHryeVNs~h~qal~~--~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~F 522 (533)
T PRK05380 445 AEIYGKEEIYERHRHRYEVNNKYREQLEK--AGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGF 522 (533)
T ss_pred HHHhCCCceeeecccceecCHHHHHHHhh--cCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHH
Confidence 55554331 12345555555544 49999999966 59999999888865 999999997654 578999999
Q ss_pred eecccc
Q 039743 194 LFDVCG 199 (531)
Q Consensus 194 ~~~~~~ 199 (531)
+ ++|.
T Consensus 523 V-~Aa~ 527 (533)
T PRK05380 523 V-KAAL 527 (533)
T ss_pred H-HHHH
Confidence 8 6663
|
|
| >PRK05368 homoserine O-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=185.07 Aligned_cols=185 Identities=21% Similarity=0.221 Sum_probs=137.5
Q ss_pred CEEEEEeCCCC---cHHHHHHHHHHCCCEEEE--EeCC----------------CChhccccCCCCEEEEcCCCCC--CC
Q 039743 6 ELVLILDYGSQ---YTHLITRRIRSLSILSLC--LSGT----------------CSLDDITAKNPRVVILSGGPHS--VH 62 (531)
Q Consensus 6 ~~I~IlD~G~~---~~~~i~r~l~~~G~~~~v--~~~~----------------~~~~~~~~~~~dgiIlsGGp~s--~~ 62 (531)
-+|+||+.=.. ....+.|.|......+++ +... .++++++..++||+|++|+|.. ++
T Consensus 36 l~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~f 115 (302)
T PRK05368 36 LKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLPF 115 (302)
T ss_pred ccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCccC
Confidence 37999976322 233456666554444443 2211 1234455678999999999987 67
Q ss_pred CCCCCCC-hHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEee-cCcccceeeeEEEe-cCCccccCCCCCceEEEEeec
Q 039743 63 SPDAPAF-PAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKV-GEKQEYGRMEILVE-RSSGIFGNKKVGHHQVVWMSH 139 (531)
Q Consensus 63 ~~~~~~~-~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~-~~~~e~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H 139 (531)
++...|- ..++++++.++.+|+||||+|+|+++.++||.... .+..++|....++. ..++|++++++. +.+.++|
T Consensus 116 edv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~~~~~pL~~g~~d~--F~~phSr 193 (302)
T PRK05368 116 EDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVLDPHHPLLRGFDDS--FLVPHSR 193 (302)
T ss_pred CCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEcCCCChhhcCCCCc--cccceee
Confidence 6654342 35788999999999999999999999999996332 34468898776664 456899999988 9999999
Q ss_pred cCcc----ccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhh
Q 039743 140 GDEA----VVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRY 192 (531)
Q Consensus 140 ~~~v----~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~ 192 (531)
.+.| ..+|+|++++|.|+.+.++++...+++++++|+|||++....-.++.|.
T Consensus 194 ~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~r~~~vQgHPEYd~~tL~~EY~RD 250 (302)
T PRK05368 194 YTEVREEDIRAATGLEILAESEEAGVYLFASKDKREVFVTGHPEYDADTLAQEYFRD 250 (302)
T ss_pred hhhccHHHhccCCCCEEEecCCCCCeEEEEeCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 8888 3578999999999999999999877789999999999875444444444
|
|
| >PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-21 Score=197.02 Aligned_cols=170 Identities=27% Similarity=0.395 Sum_probs=110.0
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCCh---------hHHHHHHHHHHHhCCCcEEEEECchHHHHhh
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRY---------KERERVMDTFEKDLHLPVTCVDATDQFLSKL 295 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~---------~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l 295 (531)
+||+||+||||||+|+|+||+++ |.+|+++|+.++.... ++.++|++ +|++||||++++|+.+.|.+.+
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~-G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~-va~~LgIp~~v~d~~~~f~~~V 78 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQ-GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARR-VAEKLGIPHYVVDLREEFWEEV 78 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHC-T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHH-HHHHHT--EEEEETHHHHHHHT
T ss_pred CeEEEEccCCHHHHHHHHHHHhh-cccceEEEEEEeccccccCCCCCchhhHHHHHH-HHHhcCCCEEEEChHHHHHHHH
Confidence 47999999999999999999998 9999999998876532 34566665 9999999999999999887663
Q ss_pred ---------cCCC-CcccccchhhHHHHH--HHHHHHHH-hhhhcCCCCcEEEecccCCCccccC--C---CCCCCCCcc
Q 039743 296 ---------KGVI-DPETKRKIIGKEFIC--IFDAFAHD-LEQKLGKKPAYLVQGTLYPDVIESC--P---PPGTGRTHS 357 (531)
Q Consensus 296 ---------~~~~-~p~~kr~~~~~~~~~--~~~~~a~~-~g~~~~~~~~~l~~Gt~~~D~~es~--~---~~g~g~~~~ 357 (531)
+|.+ || |+.||.+++ .|.+.|.+ +| ++++|||| |..+.... . ..+. .
T Consensus 79 i~~f~~~Y~~G~TPNP----cv~CN~~IKF~~l~~~a~~~~g------~d~iATGH-YAri~~~~~~~~~~L~r~----~ 143 (356)
T PF03054_consen 79 IEPFLDEYRKGRTPNP----CVLCNRFIKFGALLEYADEGLG------ADYIATGH-YARIEKDEKNGRYRLLRG----A 143 (356)
T ss_dssp HHHHHHHHHTT----H----HHHHHHHTTTTHHHHHHHTTTT-------SEEE----SEEEEEES-TTEEEEEE-----S
T ss_pred HHHHHHHHhcCCCCCh----HHhhchhhhHHHHHHHHHhhcC------CCeeccce-eEEEEeeccCCceEEEec----C
Confidence 4543 55 488898765 77788887 77 89999998 66665431 0 0111 2
Q ss_pred cccccc-cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCc
Q 039743 358 HTIKSH-HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGL 413 (531)
Q Consensus 358 ~~ikt~-~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~l 413 (531)
+..|.+ |.+..++...--+++-||.+++|+|||++|+++|||. ..+..+.+-|+
T Consensus 144 D~~KDQSYfL~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~--a~k~eSq~iCF 198 (356)
T PF03054_consen 144 DPKKDQSYFLSRLPQEQLSRLIFPLGELTKEEVREIAREAGLPV--AEKKESQGICF 198 (356)
T ss_dssp STTC--GGGGTT--HHHHCCEE-TCCCS-HHHHHHHHHHCT-TT--TT-----SSTT
T ss_pred CCCCCceEEEEecCHHHHHhhcCCCCCCCHHHHHHHHHhcCCcc--cCccccceEEE
Confidence 333333 5677787766678999999999999999999999993 34445556565
|
; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A. |
| >PRK08384 thiamine biosynthesis protein ThiI; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=193.28 Aligned_cols=185 Identities=22% Similarity=0.269 Sum_probs=133.7
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCC-------CcEEEEECch--HH
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLH-------LPVTCVDATD--QF 291 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lg-------i~~~vvd~~~--~f 291 (531)
++..+++++++|||+||+|+++++++. |.+|.++|+++| ....+.+.+ +|+.|+ +++++++... .+
T Consensus 177 vGs~gkvlvllSGGiDSpVAa~ll~kr-G~~V~~v~f~~g---~~~~e~v~~-la~~L~~~~~~~~i~l~~v~~~~~~~v 251 (381)
T PRK08384 177 IGTQGKVVALLSGGIDSPVAAFLMMKR-GVEVIPVHIYMG---EKTLEKVRK-IWNQLKKYHYGGKAELIVVKPQERERI 251 (381)
T ss_pred cCCCCcEEEEEeCChHHHHHHHHHHHc-CCeEEEEEEEeC---HHHHHHHHH-HHHHhcccccCCcceEEEEChHHHHHH
Confidence 466789999999999999999999998 999999999988 345556655 888887 5577777642 13
Q ss_pred HHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc
Q 039743 292 LSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 292 ~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
...+.....+...|.+|++.+++++.++|++.| +++|++||+.+|+.+ +|..|+..+..
T Consensus 252 ~~~i~~~~~~~~~C~~Ckr~m~r~a~~iA~~~g------~~~IaTGhslgqvaS---------------Qtl~Nl~~i~~ 310 (381)
T PRK08384 252 IQKLKELKKENYTCVFCKFMMVKHADRIAKEFG------AKGIVMGDSLGQVAS---------------QTLENMYIVSQ 310 (381)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHHHHcC------CCEEEEcccchhHHH---------------HHHHHHHHHhc
Confidence 333322222333444444447789999999988 899999999998764 23334333444
Q ss_pred ccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHH
Q 039743 372 DMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEI 436 (531)
Q Consensus 372 ~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~ 436 (531)
...+.+++||..++|+||+++|+++|..+ +...|..++|++.+ ..+|..++ +.+++.++.
T Consensus 311 ~~~lpilRPLi~~dK~EIi~~Ar~iGT~~--~s~~~~~dc~f~pk--~P~t~~~~-~~~~~~e~~ 370 (381)
T PRK08384 311 ASDLPIYRPLIGMDKEEIVAIAKTIGTFE--LSTLPEDEIPFIPK--HPVIRGSW-EEFRKLYKA 370 (381)
T ss_pred cCCCcEEeeCCCCCHHHHHHHHHHcCCcc--cccCCCCceEEeCC--CCcCCCCH-HHHHHHHHH
Confidence 44567999999999999999999999543 34567767666532 55777777 666666654
|
|
| >PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-20 Score=188.72 Aligned_cols=171 Identities=23% Similarity=0.264 Sum_probs=124.2
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC----------ChhHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL----------RYKERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~----------~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
++|+||+|||+||+++|+++++. |.++.++|++++.. +..+.+.+.+ +|+++||+++++|+++.|...
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~-G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~-~a~~LgIp~~vvd~~~~f~~~ 78 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQ-GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARR-VADKLGIPHYVVDFEKEFWDR 78 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHc-CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHH-HHHHcCCcEEEEeCHHHHHHH
Confidence 37999999999999999999986 99999999998753 2345566655 899999999999998766433
Q ss_pred h---------cCCCCcccccchhhHHH--HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccc-c
Q 039743 295 L---------KGVIDPETKRKIIGKEF--ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIK-S 362 (531)
Q Consensus 295 l---------~~~~~p~~kr~~~~~~~--~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ik-t 362 (531)
+ .+.+ | ..|+.|+.. +..+.+.|+++| +++|++||+.+|..++....+. +.-+ .
T Consensus 79 vi~~~~~~~~~g~t-p--npc~~C~r~ik~~~l~~~A~~~g------~~~IATGH~a~d~~~~~L~rg~-----d~~kDq 144 (346)
T PRK00143 79 VIDYFLDEYKAGRT-P--NPCVLCNKEIKFKAFLEYARELG------ADYIATGHYARIRDGRELLRGV-----DPNKDQ 144 (346)
T ss_pred HHHHHHHHHHcCCC-C--CcChhhhHHHHHHHHHHHHHHCC------CCEEEeeeeccccccceEEEcc-----CCCcCh
Confidence 1 2221 2 124555653 568889999888 8999999999998764111222 1111 1
Q ss_pred ccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCC-CCcc
Q 039743 363 HHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPG-PGLA 414 (531)
Q Consensus 363 ~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~-p~la 414 (531)
-+.+.+++.....++++||.+++|+|||++|+++|||. +..|.+. .|++
T Consensus 145 sy~l~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~---~~k~~s~~icf~ 194 (346)
T PRK00143 145 SYFLYQLTQEQLAKLLFPLGELTKPEVREIAEEAGLPV---AKKKDSQGICFI 194 (346)
T ss_pred hhhhccCCHHHhcceeccCccCCHHHHHHHHHHcCCCc---CCCCCCCcccCC
Confidence 13344555433447999999999999999999999995 6667663 6664
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-20 Score=196.38 Aligned_cols=212 Identities=20% Similarity=0.261 Sum_probs=150.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
+.+|+.+|+|..|. +.|+|...|+++.++|++.+.++ .+||||+|++||+++.- .+.+...+ +..++.++||
T Consensus 172 ~~~I~aiDcG~K~N--~IRcL~~RGa~vtVvPw~~~i~~---~~yDGlflSNGPGdPe~--~~~~v~~v-r~lL~~~~Pv 243 (1435)
T KOG0370|consen 172 SLRILAIDCGLKYN--QIRCLVKRGAEVTVVPWDYPIAK---EEYDGLFLSNGPGDPEL--CPLLVQNV-RELLESNVPV 243 (1435)
T ss_pred ccEEEEcccCchHH--HHHHHHHhCceEEEecCCccccc---cccceEEEeCCCCCchh--hHHHHHHH-HHHHhCCCCe
Confidence 46899999998775 78999999999999999987754 38999999999995321 12222222 3344457999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccc--cCCCCcEEEEEe-CCCcE
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--VLPDGFEVVARS-QQGAV 161 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s-~~~~v 161 (531)
+|||+|||+|+.+.|++..+...+.-|. ++ |... .....++..-++|++.|. .||.|++.+-.+ +|+..
T Consensus 244 fGIClGHQllA~AaGakT~KmKyGNRGh---Ni----P~~~-~~tGrc~ITSQNHGYAVD~~tLp~gWk~lFvN~NDgSN 315 (1435)
T KOG0370|consen 244 FGICLGHQLLALAAGAKTYKMKYGNRGH---NI----PCTC-RATGRCFITSQNHGYAVDPATLPAGWKPLFVNANDGSN 315 (1435)
T ss_pred EEEehhhHHHHHhhCCceEEeeccccCC---Cc----ccee-ccCceEEEEecCCceeeccccccCCCchheeecccCCC
Confidence 9999999999999999998875433332 22 1111 112224777789999984 689999999888 77899
Q ss_pred EEEEECCCcEEEEecCCCCCCCccc-chhhhhheeccccccccccccchhhhhh-hhhhccccCccceeeccCCCC
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEG-METLRYFLFDVCGVNAGWKLENVLDEEV-KCIKDTVGLEDHVICALSGGV 235 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g-~~i~~~F~~~~~~~~~~w~~~~~~~~~~-~~i~~~v~~~~kvvvalSGGv 235 (531)
+++.|...|++.+|||||.+..+.. .-+|+.|+....+....-+...+..... ...+. ..+++++.=|||.
T Consensus 316 EGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~kst~tAs~~~t~~~~~~~~~---~~~kVlvlGSGGL 388 (1435)
T KOG0370|consen 316 EGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKSTPTASAFITEPAKAAPRV---EVKKVLVLGSGGL 388 (1435)
T ss_pred ceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHHHHhcCCcccccccccccccccc---cccEEEEEccCCc
Confidence 9999999999999999999987754 5678888844444333333333332111 11121 1457888888885
|
|
| >PRK08349 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=172.68 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=115.9
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcE---EEEECchHHHH---hhcCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPV---TCVDATDQFLS---KLKGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~---~vvd~~~~f~~---~l~~~~ 299 (531)
++++++|||+||+|+++++++. |.+|+++|+|++....+..+++.+.+++.+|+++ .++|..+.... .+....
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~-g~~v~av~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 80 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRR-GVEVYPVHFRQDEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLRELK 80 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHc-CCeEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHhhC
Confidence 6899999999999999999886 9999999999853211222233333455556876 55665433221 111111
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
+....|..|+..|+.++.++|+++| ++.|++||+.+|..++ +..|+........+.+++
T Consensus 81 ~~~~~c~~cr~~~~~~a~~~A~~~g------~~~I~tG~~~~d~a~~---------------~l~nl~~~~~~~~i~i~r 139 (198)
T PRK08349 81 KEKWTCIFCKYTMYRKAERIAHEIG------ASAIITGDSLGQVASQ---------------TLDNLMVISTATDLPVLR 139 (198)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHcC------CCEEEEecCCchHHHH---------------HHHHHhccccccCCeEEc
Confidence 1222333455557778888998888 8999999999997652 112222222223467999
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCCCCCcccccc-CCCCcchHHHHHhhh
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVL-GDVTEGNSLDILRQV 433 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~-g~vt~~~l~~~~~~~ 433 (531)
||.+++|+||+++|+++|+++ .+..| +.+|... + -..|.... ..+++.
T Consensus 140 PL~~~~K~eI~~~a~~~g~~~--~~~~~-~~~C~~~--~~~~~~~~~~-~~~~~~ 188 (198)
T PRK08349 140 PLIGLDKEEIVKIAKEIGTFE--ISIEP-EPPCPFV--PKYPVVRASL-GEFEKI 188 (198)
T ss_pred CCCCCCHHHHHHHHHHcCChh--hhhCC-CCCCcCC--CCCCcCCCCH-HHHHHH
Confidence 999999999999999999764 35556 4456521 2 22455555 444443
|
|
| >cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=170.59 Aligned_cols=159 Identities=20% Similarity=0.241 Sum_probs=114.5
Q ss_pred ceeeccCCCCCHHHHHHHHHHHh-----CCcEEEEEEeCCCCC--hhHHHHHHHHHHHhCCCcEEEEECchHHHH-hhcC
Q 039743 226 HVICALSGGVDSTVAATLVHKAI-----GDRLHCVFVDNGLLR--YKERERVMDTFEKDLHLPVTCVDATDQFLS-KLKG 297 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~-----g~~v~~v~id~g~~~--~~e~~~~~~~la~~lgi~~~vvd~~~~f~~-~l~~ 297 (531)
+|+|++|||+||+++++++++.. +.+++++|+|+|... ..+.+.+.+ +|+.+|++++++++++.|.. ....
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 79 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVER-LAEELGIELEIVSFKEEYTDDIEVK 79 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHH-HHHHcCCceEEEehhhhcchhhhhh
Confidence 58999999999999999998864 348999999999864 345555554 89999999999999865400 0111
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCCC----
Q 039743 298 VIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGLP---- 370 (531)
Q Consensus 298 ~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l~---- 370 (531)
..+....|..|.+.++..+.+.|++.| ++.|++||+.+|++|+.. +.|.| +. +..++.
T Consensus 80 ~~~~~~~~~~c~~~r~~~l~~~a~~~g------~~~l~~Gh~~dD~~et~l~~~~~g~~------~~---~~~~~~~~~~ 144 (185)
T cd01993 80 KRGGKSPCSLCGVLRRGLLNKIAKELG------ADKLATGHNLDDEAETLLMNLLRGGI------LR---LMRPGPILYL 144 (185)
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHcC------CCEEEEcCChHHHHHHHHHHHHhcCH------HH---HcCCCCcccc
Confidence 112223344555566778888898887 899999999999998631 11110 01 111121
Q ss_pred cccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 371 KDMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 371 ~~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
......+++||.+++|+||+++++++|||.
T Consensus 145 ~~~~~~iirPL~~~~k~eI~~~~~~~~l~~ 174 (185)
T cd01993 145 DEGDVTRIRPLVYVREKEIVLYAELNGLPF 174 (185)
T ss_pred CCCCceEEeecccCCHHHHHHHHHHcCCCc
Confidence 223467999999999999999999999995
|
Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus. |
| >TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=172.14 Aligned_cols=161 Identities=24% Similarity=0.273 Sum_probs=118.0
Q ss_pred ceeeccCCCCCHHHHHHHHHHH---hCCcEEEEEEeCCCCC--hhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKA---IGDRLHCVFVDNGLLR--YKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~---~g~~v~~v~id~g~~~--~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
+|+||+|||+||+++++++.++ .|.++.++|+|+|+.. ..+.+.+.+ +|+.+|+++++++++........ ..+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~-~~~~~gi~~~~~~~~~~~~~~~~-~~~ 78 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQ-FCKKLNIPLEIKKVDVKALAKGK-KKN 78 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHH-HHHHcCCCEEEEEecchhhcccc-CCC
Confidence 5899999999999999999875 3678999999999974 335566655 89999999999998643211111 122
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCCCccc----
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGLPKDM---- 373 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l~~~~---- 373 (531)
++ ..+.+.++..+.++|++.| +++|++||+.+|++|+.. +.|. ...++.++++..
T Consensus 79 ~~---~~~r~~R~~~l~~~a~~~g------~~~i~~Gh~~~D~~e~~l~~~~~g~---------~~~~l~~~~~~~~~~~ 140 (189)
T TIGR02432 79 LE---EAAREARYDFFEEIAKKHG------ADYILTAHHADDQAETILLRLLRGS---------GLRGLSGMKPIRILGN 140 (189)
T ss_pred HH---HHHHHHHHHHHHHHHHHcC------CCEEEEcCccHHHHHHHHHHHHcCC---------CcccccCCccccccCC
Confidence 22 2344567778888998887 899999999999998621 1121 112344454322
Q ss_pred ccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 374 KLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 374 ~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
...+++||.+++|+||+++++++|+|. +..|++
T Consensus 141 ~~~iirPL~~~~k~ei~~~~~~~~lp~---~~~~~~ 173 (189)
T TIGR02432 141 GGQIIRPLLGISKSEIEEYLKENGLPW---FEDETN 173 (189)
T ss_pred CCEEECCCCCCCHHHHHHHHHHcCCCe---eeCCCC
Confidence 466999999999999999999999995 655644
|
The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). |
| >cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=168.33 Aligned_cols=152 Identities=19% Similarity=0.213 Sum_probs=109.4
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhH----HHHHHHHHHHhCCCcE--EEEECchHHHHhhcCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKE----RERVMDTFEKDLHLPV--TCVDATDQFLSKLKGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e----~~~~~~~la~~lgi~~--~vvd~~~~f~~~l~~~~ 299 (531)
+++|+||||+||+++++++++. |.+++++|+|+|+...++ ..++.+ ..+.+++++ .+++....+........
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~-g~~v~av~~d~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 78 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR-GIEVDALHFNSGPFTSEKAREKVEDLAR-KLARYSPGHKLVVIIFTFFVQKEIYGYG 78 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc-CCeEEEEEEeCCCCCchHHHHHHHHHHH-HHHHhCCCCceEEEeCcHHHHHHHHHhC
Confidence 5899999999999999999997 999999999999986653 344444 335566554 56666542222221223
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
++...|..|.+.++..+.+.|++.| ++++++||+.+|..++. ..|+........+++++
T Consensus 79 ~~~~~c~~Cr~~~~~~~~~~A~~~g------~~~I~~G~~~~D~~~~~---------------~~~l~~~~~~~~~~i~r 137 (177)
T cd01712 79 KEKYRCILCKRMMYRIAEKLAEELG------ADAIVTGESLGQVASQT---------------LENLLVISSGTDLPILR 137 (177)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHcC------CCEEEEccCcccchHHH---------------HHhhhhcccCCCCeEEC
Confidence 4555565666667778888898887 89999999999965421 11111111223578999
Q ss_pred ccccCCHHHHHHHHHHcCCCc
Q 039743 380 PLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~ 400 (531)
||.+++|+||+++|+++|+|.
T Consensus 138 Pl~~~~K~eI~~~a~~~gl~~ 158 (177)
T cd01712 138 PLIGFDKEEIIGIARRIGTYD 158 (177)
T ss_pred CCCCCCHHHHHHHHHHcCCcc
Confidence 999999999999999999996
|
It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide. |
| >PRK00876 nadE NAD synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=183.69 Aligned_cols=197 Identities=22% Similarity=0.202 Sum_probs=140.1
Q ss_pred hhhhhhhhhhccccC---ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 209 VLDEEVKCIKDTVGL---EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 209 ~~~~~~~~i~~~v~~---~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
..+++.+.|++.+.. .++|++++|||+||+++|+++.+++| .++++++++++.....+.+.+.. +|+.+|+++++
T Consensus 15 ~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~~s~~~e~~~A~~-lA~~LGi~~~~ 93 (326)
T PRK00876 15 EAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLRLGRE-VAEHLGVEYVV 93 (326)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCCCCChHHHHHHHH-HHHHcCCCEEE
Confidence 344444555555432 35899999999999999999999988 68999999988766777777776 99999999999
Q ss_pred EECchHHHHh-------------hcC-------------C--CC-------------cc-cc----------cchhhHHH
Q 039743 285 VDATDQFLSK-------------LKG-------------V--ID-------------PE-TK----------RKIIGKEF 312 (531)
Q Consensus 285 vd~~~~f~~~-------------l~~-------------~--~~-------------p~-~k----------r~~~~~~~ 312 (531)
+++++.+... +.. . .+ .+ .+ ....+|..
T Consensus 94 i~i~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~ 173 (326)
T PRK00876 94 EDITPALEALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDGDGLNVFSLVVQDPDGEVTRKRLPANAYLQIVAATNFK 173 (326)
T ss_pred EECchHHHHhhhhhhhHHHHHHHHHHHhccccccccccccccccccccccccccCccccccccccccchhhhHHHHHHHH
Confidence 9998742210 100 0 00 00 00 11122332
Q ss_pred HH----HHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHH
Q 039743 313 IC----IFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDE 388 (531)
Q Consensus 313 ~~----~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~e 388 (531)
.| ++...|.. .++++.||.+-. | ...|+ .|+||+++. .+.||.+|+|.|
T Consensus 174 aR~Rm~~ly~~A~~--------~~~lVlgT~Nks--E--~~~Gy--------~TkyGD~~~-------d~~Pi~~L~Kt~ 226 (326)
T PRK00876 174 QRTRKMVEYYHADR--------LNYAVAGTPNRL--E--YDQGF--------FVKNGDGAA-------DLKPIAHLYKTQ 226 (326)
T ss_pred HHHHHHHHHHHHHh--------cCCEEEcCCchh--h--HhhCC--------eeeecCccc-------cchhccCCCHHH
Confidence 22 34444443 457888885432 2 23455 889999877 899999999999
Q ss_pred HHHHHHHcCCCccccccCCCCCCCccccc-cCCCCcch-HHHHHhhhhHHHH
Q 039743 389 VRQLGRILNVPEQFLKRHPFPGPGLAVRV-LGDVTEGN-SLDILRQVDEIFI 438 (531)
Q Consensus 389 Vr~la~~lglp~~~~~~~P~~~p~la~r~-~g~vt~~~-l~~~~~~~d~~~~ 438 (531)
|+++|+.+|+|++|+.+.|+++ -+ .++.+++. ++-.++..|.++.
T Consensus 227 V~~La~~l~vP~~Ii~k~PSa~-----L~~~~q~de~~~~g~~Y~~lD~~L~ 273 (326)
T PRK00876 227 VYALAEHLGVPEEIRRRPPTTD-----TYSLPQTQEEFYFALPYDRMDLCLY 273 (326)
T ss_pred HHHHHHHhCCCHHHhcCCCCcc-----cCCCCCChhhhhcCCCHHHHHHHHH
Confidence 9999999999999999988776 33 37888886 5568999999964
|
|
| >PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-20 Score=173.89 Aligned_cols=183 Identities=21% Similarity=0.262 Sum_probs=105.3
Q ss_pred CccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCC----hhHHHHHHHHHHHhC---CCcEEEEECchHHHHhh
Q 039743 223 LEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR----YKERERVMDTFEKDL---HLPVTCVDATDQFLSKL 295 (531)
Q Consensus 223 ~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~----~~e~~~~~~~la~~l---gi~~~vvd~~~~f~~~l 295 (531)
..+|++++||||+||.|++++++|. |.+|+++|++++... .+..+++.+.+++.. .+++.++|+.+.+.+-.
T Consensus 2 t~gk~l~LlSGGiDSpVAa~lm~kr-G~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~ 80 (197)
T PF02568_consen 2 TQGKALALLSGGIDSPVAAWLMMKR-GCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEIL 80 (197)
T ss_dssp TT-EEEEE-SSCCHHHHHHHHHHCB-T-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHH
T ss_pred CCceEEEEecCCccHHHHHHHHHHC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHH
Confidence 4679999999999999999999998 999999999954432 233344444343322 36888899887654433
Q ss_pred cCCCCcccccchhh-HHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 296 KGVIDPETKRKIIG-KEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 296 ~~~~~p~~kr~~~~-~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
.+. ++..+|+.| +.|+++..++|++.| ++.|++|....++.. +|.+|+..+....+
T Consensus 81 ~~~--~~~~~ci~ckr~M~r~A~~ia~~~g------a~~IvTGEsLGQvaS---------------QTl~nL~~i~~~~~ 137 (197)
T PF02568_consen 81 RGV--KERNPCIDCKRFMYRIAEEIAEEEG------ADAIVTGESLGQVAS---------------QTLENLRVIESASD 137 (197)
T ss_dssp HHS---GGGHHHHHHHHHHHHHHHHHHHTT--------EEE----SSSTTS-----------------HHHHHHHGGG--
T ss_pred hcC--CccchhHHHHHHHHHHHHHHHHHCC------CCEEEeCchhHHHHh---------------hhHHHHhhhhcccC
Confidence 333 333345544 447889999999988 899999999988742 45566655555557
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhh
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVD 434 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d 434 (531)
..++|||..++|+||.++|++.|+.+ +...|. ++|-..- ..++|+.++ +.+++.+
T Consensus 138 ~pIlRPLig~dK~EIi~~Ar~Igtye--~S~~~~-~~C~~~~-k~p~t~~~~-~~~~~~e 192 (197)
T PF02568_consen 138 LPILRPLIGFDKEEIIEIARKIGTYE--ISIRPY-DCCSLFP-KHPVTKAKL-EEVEKEE 192 (197)
T ss_dssp S-EE-TTTT--HHHHHHHHHHTT-HH--HHTS-------------------H-HHHHHHH
T ss_pred CceeCCcCCCCHHHHHHHHHHhCchh--hhcCCC-CcceeeC-CCCCcCCCH-HHHHHHH
Confidence 78999999999999999999999976 566676 6665332 445666666 5555444
|
ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A. |
| >cd01998 tRNA_Me_trans tRNA methyl transferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-19 Score=184.01 Aligned_cols=170 Identities=25% Similarity=0.320 Sum_probs=123.4
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC--------ChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh--
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL--------RYKERERVMDTFEKDLHLPVTCVDATDQFLSKL-- 295 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~--------~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l-- 295 (531)
+|+||+|||+||+++|+++++. |.+++++|++++.. +..+.+.+.+ +|+.+|++++++|+++.|...+
T Consensus 1 kVlValSGGvDSsvla~lL~~~-g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~-va~~lgI~~~vvd~~~~f~~~v~~ 78 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ-GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARR-VADQLGIPHYVVNFEKEYWEKVFE 78 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc-CCcEEEEEEecccccccccCCCCHHHHHHHHH-HHHHhCCcEEEEECcHHHHHHHHH
Confidence 5899999999999999999886 99999999998753 3456666665 8999999999999987665332
Q ss_pred -------cCCCCcccccchhhHHH--HHHHHHHHHHhhhhcCCCCcEEEecccCCCcccc-CC--CCCCCCCcccccccc
Q 039743 296 -------KGVIDPETKRKIIGKEF--ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIES-CP--PPGTGRTHSHTIKSH 363 (531)
Q Consensus 296 -------~~~~~p~~kr~~~~~~~--~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es-~~--~~g~g~~~~~~ikt~ 363 (531)
.+.+ |. .|+.|+.+ +..+.+.|+++| +++|++||+.+|..+. .. +.+. .+.-+..
T Consensus 79 ~~i~~~~~g~t-pn--pc~~C~r~ikf~~l~~~A~~~g------~~~IatGHya~d~~~~~~~~~l~rg----~d~~kdq 145 (349)
T cd01998 79 PFLEEYKKGRT-PN--PDILCNKEIKFGALLDYAKKLG------ADYIATGHYARIEEDNNGRYRLLRG----VDPNKDQ 145 (349)
T ss_pred HHHHHHHcCCC-CC--chHhhhhHHHHHHHHHHHHHcC------cCEEEECCcCCeeecCCCceEEeec----CCCCCCc
Confidence 2221 21 34666663 567788888888 8999999999987764 11 1111 1111211
Q ss_pred -cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCC-CCCCCc
Q 039743 364 -HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHP-FPGPGL 413 (531)
Q Consensus 364 -~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P-~~~p~l 413 (531)
+.+.+++.....++++||.+++|+|||++|+++|||. +..| +.+-|+
T Consensus 146 sy~L~~~~~~~l~~ii~PL~~~~K~eVr~~A~~~gl~~---~~k~~s~~iCF 194 (349)
T cd01998 146 SYFLSQLSQEQLSRLIFPLGDLTKPEVREIAKELGLPV---AKKKDSQGICF 194 (349)
T ss_pred ceEeccCCHHHHhheeecCCCCCHHHHHHHHHHcCCCC---CCCCCCCceEE
Confidence 4456666544567999999999999999999999994 5544 445454
|
This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence. |
| >PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-20 Score=172.47 Aligned_cols=158 Identities=26% Similarity=0.337 Sum_probs=102.6
Q ss_pred ceeeccCCCCCHHHHHHHHHHHh---CCcEEEEEEeCCCCChh--HHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAI---GDRLHCVFVDNGLLRYK--ERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~---g~~v~~v~id~g~~~~~--e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
|++||+|||+||+++++++.+.. +.++.++|+|+|+.... +.+.+. .+|+.+|+++++.+++.. .....+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~-~~~~~~~i~~~~~~~~~~----~~~~~~ 75 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVE-EICEQLGIPLYIVRIDED----RKKGSN 75 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHH-HHHHHTT-EEEEEE--CH----CCTTST
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHH-HHHHhcCCceEEEEeeee----ecccCC
Confidence 68999999999999999998863 46899999999998543 334444 489999999999998751 111122
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCC---CCCCCCcccccccccccCCCCcc---cc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPP---PGTGRTHSHTIKSHHNVGGLPKD---MK 374 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~---~g~g~~~~~~ikt~~~~~~l~~~---~~ 374 (531)
.+ ..+...+++.+.+.|++.| ++.|++|||.||++|+... .|.| + .++.+++.. ..
T Consensus 76 ~e---~~aR~~Ry~~l~~~a~~~g------~~~i~~GHh~dD~~ET~l~~l~rg~~------~---~~l~~~~~~~~~~~ 137 (182)
T PF01171_consen 76 IE---ECARELRYQFLREIAKEEG------CNKIALGHHLDDQAETFLMNLLRGSG------L---RGLAGMPPVSPFKG 137 (182)
T ss_dssp CH---HHHHHHHHHHHHHHHHTTT-------CEEE---BHHHHHHHHHHHHHHT--------C---CCCC-S-SEEEETT
T ss_pred HH---HHHHHHHHHHHHHhhhccc------ccceeecCcCCccHHHHHHHHHHhcc------c---hhhccccccccccC
Confidence 22 2333457788999999888 8999999999999997321 1211 0 123344432 25
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+.++|||..++|+|++++++..|+|. +..|++
T Consensus 138 ~~~iRPLl~~~k~ei~~~~~~~~i~~---~~D~tN 169 (182)
T PF01171_consen 138 IKLIRPLLYVSKDEIRAYAKENGIPY---VEDPTN 169 (182)
T ss_dssp CEEE-GGGCS-HHHHHHHHHHTT-SS---BS-CCG
T ss_pred cccCCcchhCCHHHHHHHHHHCCCcE---EECcCC
Confidence 78999999999999999999999995 444543
|
The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A. |
| >PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-19 Score=181.57 Aligned_cols=181 Identities=18% Similarity=0.196 Sum_probs=124.9
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCC--hhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcC-
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR--YKERERVMDTFEKDLHLPVTCVDATDQFLSKLKG- 297 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~--~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~- 297 (531)
+.++++|+||+|||+||+|+|+++++. |.+++++|++++... .++.+.+.+ +|++|||+++++|.++.|...+-.
T Consensus 2 ~~~~~kVlValSGGVDSsvaa~LL~~~-G~~V~~v~~~~~~~~~~~~d~~~a~~-va~~LgIp~~vvd~~~~f~~~v~~~ 79 (360)
T PRK14665 2 MEKNKRVLLGMSGGTDSSVAAMLLLEA-GYEVTGVTFRFYEFNGSTEYLEDARA-LAERLGIGHITYDARKVFRKQIIDY 79 (360)
T ss_pred CCCCCEEEEEEcCCHHHHHHHHHHHHc-CCeEEEEEEecCCCCCChHHHHHHHH-HHHHhCCCEEEEecHHHHHHHHHhh
Confidence 345789999999999999999999986 999999999986542 334555655 999999999999998777554310
Q ss_pred ----C-CCcccccchhhHHHH--HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCC---CCCCCCcccccccccccC
Q 039743 298 ----V-IDPETKRKIIGKEFI--CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPP---PGTGRTHSHTIKSHHNVG 367 (531)
Q Consensus 298 ----~-~~p~~kr~~~~~~~~--~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~---~g~g~~~~~~ikt~~~~~ 367 (531)
. .......|+.|+.++ ..+.+.|+++| +++|++||+..+..+.... .+.. ...-+| +.+.
T Consensus 80 f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G------~~~IATGHya~~~~~~~~~~l~~g~D---~~kDQS-yfL~ 149 (360)
T PRK14665 80 FIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMG------IFYLATGHYVRKQWIDGNYYITPAED---VDKDQS-FFLW 149 (360)
T ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcC------CCEEEECCccceeccCCcEEEEeecC---CCCCce-EEec
Confidence 0 001112356667643 57888999888 8999999987653322110 1110 001111 3345
Q ss_pred CCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCcc
Q 039743 368 GLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLA 414 (531)
Q Consensus 368 ~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la 414 (531)
.++...--++++||.+++|+|||++|+++|++. +..+..+.+.|+.
T Consensus 150 ~l~~~~l~~~ifPLg~~~K~eVr~~A~~~gl~~-~a~k~eSq~iCF~ 195 (360)
T PRK14665 150 GLRQEILQRMLLPMGGMTKSEARAYAAERGFEK-VAKKRDSLGVCFC 195 (360)
T ss_pred CCCHHHHhheeccCcCCCHHHHHHHHHHCCCCc-cCcCCCCCccccC
Confidence 555544456899999999999999999999852 2345556677773
|
|
| >COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-19 Score=177.68 Aligned_cols=160 Identities=26% Similarity=0.322 Sum_probs=119.3
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCC-------CChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh-
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGL-------LRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL- 295 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~-------~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l- 295 (531)
..||+||+||||||+|+|+|+++. |.+|+++||.++. .+.++..++.+ +|++||||++++|+.+.|++.+
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~Q-GyeViGl~m~~~~~~~~~~C~s~~d~~da~~-va~~LGIp~~~vdf~~~y~~~V~ 80 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQ-GYEVIGLFMKNWDEDGGGGCCSEEDLRDAER-VADQLGIPLYVVDFEKEFWNKVF 80 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHc-CCeEEEEEEEeeccCCCCcCCchhHHHHHHH-HHHHhCCceEEEchHHHHHHHHH
Confidence 568999999999999999999998 9999999998776 33456667776 8999999999999999988653
Q ss_pred --------cCC-CCcccccchhhHHHH--HHHHHHHHHhhhhcCCCCcEEEecccCCCccccC---CCCCCCCCcccccc
Q 039743 296 --------KGV-IDPETKRKIIGKEFI--CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESC---PPPGTGRTHSHTIK 361 (531)
Q Consensus 296 --------~~~-~~p~~kr~~~~~~~~--~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~---~~~g~g~~~~~~ik 361 (531)
.|. .||+ +.||..+ ..|.+.|.++| ++++++|| |--+.... ...++ .+.-|
T Consensus 81 ~~f~~~Y~~G~TPNPc----i~CN~~iKF~~~l~~a~~lg------ad~iATGH-Yar~~~~~~~~~l~r~----~D~~K 145 (356)
T COG0482 81 EYFLAEYKAGKTPNPC----ILCNKEIKFKALLDYAKELG------ADYIATGH-YARQREDEGIELLLRG----VDLNK 145 (356)
T ss_pred HHHHHHHhCCCCCCcc----hhcCHHHHHHHHHHHHHHcC------CCeEEEee-eEeeecCCcccccccC----CCccc
Confidence 232 2454 7776644 46777888877 89999999 33332211 11222 22222
Q ss_pred cc-cccCCCCcccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 362 SH-HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 362 t~-~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
.+ +.+..+.+..--+++-||.+|.|.|||++|++.|||.
T Consensus 146 DQsYfL~~~~~~ql~~~lFPlG~l~K~evR~iA~~~gL~~ 185 (356)
T COG0482 146 DQSYFLYALSQEQLERLLFPLGDLEKLEVRPIAAEKGLPT 185 (356)
T ss_pred chhheecccCHHHHhhccccCCCCCHHHHHHHHHHcCCCc
Confidence 22 4455555555556899999999999999999999995
|
|
| >PLN02327 CTP synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-19 Score=186.90 Aligned_cols=186 Identities=19% Similarity=0.209 Sum_probs=118.8
Q ss_pred EEEEE-eC---CCCcHHHHHHHHHH----CCCEEEEEeCCC-Chhc------------c--ccCCCCEEEEcCCCCCCCC
Q 039743 7 LVLIL-DY---GSQYTHLITRRIRS----LSILSLCLSGTC-SLDD------------I--TAKNPRVVILSGGPHSVHS 63 (531)
Q Consensus 7 ~I~Il-D~---G~~~~~~i~r~l~~----~G~~~~v~~~~~-~~~~------------~--~~~~~dgiIlsGGp~s~~~ 63 (531)
+|+++ +| -+.| .++..+|+. ++..+.+.+.+. ++++ + .+.++|||++|||+++...
T Consensus 299 ~IalVGKY~~l~DAY-~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~ 377 (557)
T PLN02327 299 RIAMVGKYTGLSDSY-LSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGV 377 (557)
T ss_pred EEEEEecccCCcHhH-HHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCccc
Confidence 57877 33 3344 245566664 456666665432 1111 0 1467899999999875322
Q ss_pred CCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecC---c--------------------------ccceeee
Q 039743 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGE---K--------------------------QEYGRME 114 (531)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~---~--------------------------~e~G~~~ 114 (531)
. -....++++.++++|+||||+|||+++.+++..|.... . ..+|.+.
T Consensus 378 ~----G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~ 453 (557)
T PLN02327 378 E----GKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRR 453 (557)
T ss_pred c----cHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcc
Confidence 2 12345678888999999999999999999887665521 1 1223333
Q ss_pred EEEe-cCCccccCCCCCceEEEEeeccCcc-----ccC-CCCcEEEEEeCCC-cEEEEEECCCcEE-EEecCCCCCCCc-
Q 039743 115 ILVE-RSSGIFGNKKVGHHQVVWMSHGDEA-----VVL-PDGFEVVARSQQG-AVAAVENREKRLF-GLQYHPEVTHSP- 184 (531)
Q Consensus 115 v~~~-~~~~l~~~~~~~~~~~v~~~H~~~v-----~~l-p~g~~vla~s~~~-~v~ai~~~~~~i~-gvQFHPE~~~~~- 184 (531)
..+. +++.+.+-+.....+.-.+.|+|.| ..+ .+|+++.|.++++ .+++++++++++| |+|||||+...+
T Consensus 454 ~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~ 533 (557)
T PLN02327 454 TYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPG 533 (557)
T ss_pred cccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCC
Confidence 3332 3333333333331122334445554 455 4799999999877 7999999888876 999999987543
Q ss_pred ccchhhhhheeccc
Q 039743 185 EGMETLRYFLFDVC 198 (531)
Q Consensus 185 ~g~~i~~~F~~~~~ 198 (531)
....+|..|+ +.|
T Consensus 534 ~~~pLF~~Fv-~Aa 546 (557)
T PLN02327 534 KPSPLFLGLI-AAA 546 (557)
T ss_pred CchHHHHHHH-HHH
Confidence 4578999998 555
|
|
| >KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-19 Score=181.49 Aligned_cols=187 Identities=22% Similarity=0.303 Sum_probs=137.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHC-CCEEEEE-eCCCChhc----cc-cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 039743 7 LVLILDYGSQYTHLITRRIRSL-SILSLCL-SGTCSLDD----IT-AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALS 79 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~-G~~~~v~-~~~~~~~~----~~-~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~ 79 (531)
+++.||..++|+..+.+.|... |+.++++ ..+...++ +. +--+|+|++..||+++..+....+..+++..+
T Consensus 16 ~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~-- 93 (767)
T KOG1224|consen 16 RTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRLLLEC-- 93 (767)
T ss_pred eEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHHHHhc--
Confidence 5899999999999999999876 4444433 33332222 21 33489999999999885554333333444442
Q ss_pred CCCcEEEeeHHHHHHHHHcCCEEeecCcccceeee-EEEecC---CccccCCCCCceEEEEeeccCccccCCCCc-EEEE
Q 039743 80 NGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRME-ILVERS---SGIFGNKKVGHHQVVWMSHGDEAVVLPDGF-EVVA 154 (531)
Q Consensus 80 ~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~-v~~~~~---~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~-~vla 154 (531)
+++||||||+|||.|+.+.|+.|...+.+.+|... ++...+ +.++.+.++. +.+..+|+-.+..+|-.. .+++
T Consensus 94 ~~iPilGICLGfQal~l~hGA~v~~~n~p~HGrvs~i~~~~~~~f~gi~sg~~~~--fK~~RYHSL~in~~pid~l~il~ 171 (767)
T KOG1224|consen 94 RDIPILGICLGFQALGLVHGAHVVHANEPVHGRVSGIEHDGNILFSGIPSGRNSD--FKVVRYHSLIINSLPIDLLPILW 171 (767)
T ss_pred CCCceeeeehhhHhHhhhcccceecCCCcccceeeeEEecCcEEEccCCCCCccc--ceeEEeEEEEecCCchhhhccee
Confidence 47999999999999999999999987777777543 443322 2455555566 999999999998888764 4444
Q ss_pred EeC--CC-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 155 RSQ--QG-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 155 ~s~--~~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
.+. +| .++++.+.+.|.||+|||||...+..|.++|+||+ ++.
T Consensus 172 t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~g~~lfkNFl-~lt 217 (767)
T KOG1224|consen 172 TIYDDNGHILMSIMHSSFPHFGLQYHPESIASTYGSQLFKNFL-DLT 217 (767)
T ss_pred EeecCCceEEEEeeccCCCccceeeChHHhhhhhhHHHHHHHH-Hhh
Confidence 443 23 57888888899999999999999999999999998 544
|
|
| >PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=167.70 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=63.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC--CCChHHHHHHHHhCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA--PAFPAGFLEWALSNGV 82 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~--~~~~~~l~~~~~~~~i 82 (531)
|++|+||.+++++... .++|+++|+++.++... +++ .++||||||||.+..+..-. ..+... ++.+.++++
T Consensus 1 ~m~igVLa~qG~~~e~-~~aL~~lG~ev~~v~~~---~~L--~~~DgLILPGGfs~~~~~L~~~~gl~~~-I~~~v~~g~ 73 (248)
T PLN02832 1 MMAIGVLALQGSFNEH-IAALRRLGVEAVEVRKP---EQL--EGVSGLIIPGGESTTMAKLAERHNLFPA-LREFVKSGK 73 (248)
T ss_pred CcEEEEEeCCCchHHH-HHHHHHCCCcEEEeCCH---HHh--ccCCEEEeCCCHHHHHHHHHhhcchHHH-HHHHHHcCC
Confidence 4579999999998654 69999999988876542 333 47799999998875433211 123333 444456799
Q ss_pred cEEEeeHHHHHHHHHc
Q 039743 83 YVLGICYGLQLMVQKL 98 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~ 98 (531)
|+||||.|||+|++..
T Consensus 74 PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 74 PVWGTCAGLIFLAERA 89 (248)
T ss_pred CEEEEChhHHHHHHHh
Confidence 9999999999999864
|
|
| >PRK11106 queuosine biosynthesis protein QueC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=167.89 Aligned_cols=165 Identities=18% Similarity=0.162 Sum_probs=117.5
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECchHH---HHhhcC--C
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDATDQF---LSKLKG--V 298 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~~~f---~~~l~~--~ 298 (531)
++++|+||||+||+++++++.+. +.+|+++++|+|+....|.+.+++ +|+++|++ |+++|.+..- .+.+.+ .
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~-~~~v~alt~dygq~~~~El~~a~~-ia~~~gi~~h~vid~~~l~~l~~s~Lt~~~~ 79 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ-YDEVHCVTFDYGQRHRAEIDVARE-LALKLGARAHKVLDVTLLNELAVSSLTRDSI 79 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc-CCeEEEEEEEeCCCCHHHHHHHHH-HHHHcCCCeEEEEeccccccccccccccccc
Confidence 57999999999999999999876 779999999999988888888876 89999996 9999997321 011111 0
Q ss_pred ---------CCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccc---ccc
Q 039743 299 ---------IDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKS---HHN 365 (531)
Q Consensus 299 ---------~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt---~~~ 365 (531)
.++...+..+.|..+ .+...+|.+.| ++.|+.|+|.+|... ++++ +..+++. ..+
T Consensus 80 ~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g------~~~I~~G~n~~D~~~----YpDc--r~~Fi~A~~~~~~ 147 (231)
T PRK11106 80 PVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVK------AEAVITGVCETDFSG----YPDC--RDEFVKALNHAVS 147 (231)
T ss_pred cCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcC------CCEEEEeeccCcCCC----CCCC--CHHHHHHHHHHHH
Confidence 011122323444433 33344677776 899999999999744 3332 1445555 222
Q ss_pred cCCCCcccccceecccccCCHHHHHHHHHHcC-CCc--cccccC
Q 039743 366 VGGLPKDMKLKLIEPLKLLFKDEVRQLGRILN-VPE--QFLKRH 406 (531)
Q Consensus 366 ~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lg-lp~--~~~~~~ 406 (531)
++. ...+++..||.+++|.||+++|+++| +|. +..|..
T Consensus 148 ~~~---~~~i~I~aPl~~lsK~eI~~l~~~lg~v~~~~~~T~SC 188 (231)
T PRK11106 148 LGM---AKDIRFETPLMWLNKAETWALADYYGQLDLVRHETLTC 188 (231)
T ss_pred hcc---CCCcEEEecCCCCCHHHHHHHHHHcCCcccccCceeec
Confidence 221 23478999999999999999999999 886 666654
|
|
| >COG0171 NadE NAD synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=171.00 Aligned_cols=205 Identities=24% Similarity=0.297 Sum_probs=147.1
Q ss_pred cchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC-----CcEEEEEEeCCCCChhHHHHHHHHHHHhCC
Q 039743 207 ENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG-----DRLHCVFVDNGLLRYKERERVMDTFEKDLH 279 (531)
Q Consensus 207 ~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g-----~~v~~v~id~g~~~~~e~~~~~~~la~~lg 279 (531)
++.++..+..+++++.. .+++++++|||+||+++++|+.+++| .++.++.++++...+.+.+++.. +++.+|
T Consensus 6 ~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~-~~~~lg 84 (268)
T COG0171 6 EEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQD-LAEALG 84 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHH-HHHHhC
Confidence 34456667777777643 36899999999999999999999997 35999999998633556677776 789999
Q ss_pred CcEEEEECchHHHH---hhcCCC-CcccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCC
Q 039743 280 LPVTCVDATDQFLS---KLKGVI-DPETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPG 351 (531)
Q Consensus 280 i~~~vvd~~~~f~~---~l~~~~-~p~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g 351 (531)
+....+++++.+.. .+.... .+.......+|. +..+++.+|.+ .+.|+.||.. ..| ...|
T Consensus 85 ~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~--------~~~lVlGTgn--~sE--~~~G 152 (268)
T COG0171 85 IDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANK--------LGGLVLGTGN--KSE--LALG 152 (268)
T ss_pred CceEEEecHHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhh--------cCCEEEcCCc--HHH--HhcC
Confidence 99999999865432 111111 110011223333 33455555553 5678989843 333 2245
Q ss_pred CCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHh
Q 039743 352 TGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILR 431 (531)
Q Consensus 352 ~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~ 431 (531)
. .|++|+++. .+.|+.+|+|.+|++|++.+|+|++++.+.|+|+ |-.--+|+.|++.++-.+.
T Consensus 153 y--------~TkyGDg~~-------d~~Pi~~L~KtqV~~La~~l~ipe~I~~k~PTAe--L~~~~~~q~DE~~lg~~Y~ 215 (268)
T COG0171 153 Y--------FTKYGDGAV-------DINPIADLYKTQVYALARHLGIPEEILKKPPTAD--LWPDEPGQTDEAELGMPYE 215 (268)
T ss_pred c--------eecccCccc-------ChhhhcCCcHHHHHHHHHHcCCCHHHhcCCCCcc--ccCCCCCCCCHHHhCCCHH
Confidence 4 899999888 8999999999999999999999999999888765 3222346889999955999
Q ss_pred hhhHHHHHHH
Q 039743 432 QVDEIFIQSI 441 (531)
Q Consensus 432 ~~d~~~~~~l 441 (531)
..|.++...+
T Consensus 216 ~lD~~L~~~~ 225 (268)
T COG0171 216 ELDDILYGLL 225 (268)
T ss_pred HHHHHHHHhh
Confidence 9999976544
|
|
| >TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=176.52 Aligned_cols=170 Identities=25% Similarity=0.323 Sum_probs=118.8
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCC----------CChhHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGL----------LRYKERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~----------~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
++|+||+|||+||+|+|+++++. |.+|+++|++++. .+..+.+.+.+ +|+.+||+++++|+++.|.+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~-va~~lgIp~~vid~~~~f~~~ 78 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQ-GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQA-ICEKLGIPLEKVNFQKEYWNK 78 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHc-CCeEEEEEEEcccccccccccCcCCHHHHHHHHH-HHHHcCCCEEEEECHHHHHHH
Confidence 37999999999999999999997 9999999996432 22345566665 899999999999998877543
Q ss_pred h---------cCCCCcccccchhhHHHH--HHHHHHHHHh-hhhcCCCCcEEEecccCCCccccC---CCCCCCCCcccc
Q 039743 295 L---------KGVIDPETKRKIIGKEFI--CIFDAFAHDL-EQKLGKKPAYLVQGTLYPDVIESC---PPPGTGRTHSHT 359 (531)
Q Consensus 295 l---------~~~~~p~~kr~~~~~~~~--~~~~~~a~~~-g~~~~~~~~~l~~Gt~~~D~~es~---~~~g~g~~~~~~ 359 (531)
+ .+. .| ..|+.|+.++ ..+.+.|++. | +++|++||+..+..+.. ...+. +.
T Consensus 79 v~~~~~~~y~~g~-tp--npC~~Cnr~iKf~~l~~~a~~~~G------~~~IATGHya~~~~d~~~~~l~~~~-----d~ 144 (352)
T TIGR00420 79 VFEPFIQEYKEGR-TP--NPDILCNKFIKFGAFLEYAAELLG------NDKIATGHYARIAEIEGKSLLLRAL-----DK 144 (352)
T ss_pred HHHHHHHHHHcCC-CC--CcchhhhHHHHHHHHHHHHHHHcC------CCEEEECCcceEeCCCCcEEEEEcc-----CC
Confidence 3 122 12 2457777754 5778888886 7 89999999884432211 11111 11
Q ss_pred ccc-ccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCC-CCCCCc
Q 039743 360 IKS-HHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHP-FPGPGL 413 (531)
Q Consensus 360 ikt-~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P-~~~p~l 413 (531)
.|. -+.+..++.....++++||.+++|+|||++|+++|||. +..| +.+-|+
T Consensus 145 ~kDqsy~L~~l~~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~---~~k~~Sq~iCF 197 (352)
T TIGR00420 145 NKDQSYFLYHLSHEQLAKLLFPLGELLKPEVRQIAKNAGLPT---AEKKDSQGICF 197 (352)
T ss_pred CcCcceecccCCHHHhhhhcccCCCCCHHHHHHHHHHcCCCC---CCCCCCCCeEE
Confidence 111 14455565444567999999999999999999999985 3344 345553
|
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea. |
| >PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-18 Score=171.24 Aligned_cols=166 Identities=18% Similarity=0.224 Sum_probs=115.9
Q ss_pred hhhhhcc--ccCccceeeccCCCCCHHHHHHHHHHH-----hCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEE
Q 039743 214 VKCIKDT--VGLEDHVICALSGGVDSTVAATLVHKA-----IGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286 (531)
Q Consensus 214 ~~~i~~~--v~~~~kvvvalSGGvDS~v~a~l~~k~-----~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd 286 (531)
.+.|+++ +.++++++||+|||+||+++++++++. ++.++.++|+|+|+.... .+.+ +.+|+++||++++++
T Consensus 17 ~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~-~~~~-~~~~~~lgI~~~v~~ 94 (258)
T PRK10696 17 GQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFP-EHVL-PEYLESLGVPYHIEE 94 (258)
T ss_pred HHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCC-HHHH-HHHHHHhCCCEEEEE
Confidence 3444443 455789999999999999999999764 135899999999985432 2233 448999999999998
Q ss_pred CchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccc
Q 039743 287 ATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSH 363 (531)
Q Consensus 287 ~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~ 363 (531)
.+..-. ...........|..|+..++..+.+.|++.| ++.|++|||.+|.+|+.. +.|.
T Consensus 95 ~~~~~~-~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g------~~~Ia~GH~~dD~~Et~l~nl~rg~----------- 156 (258)
T PRK10696 95 QDTYSI-VKEKIPEGKTTCSLCSRLRRGILYRTARELG------ATKIALGHHRDDILETLFLNMFYGG----------- 156 (258)
T ss_pred ecchhh-hhhhhccCCChhHHHHHHHHHHHHHHHHHcC------CCEEEEcCchHHHHHHHHHHHHhCC-----------
Confidence 653110 0011111112234555556678888999887 899999999999998632 1121
Q ss_pred cccCCCCcc-----cccceecccccCCHHHHHHHHHHcCCCc
Q 039743 364 HNVGGLPKD-----MKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 364 ~~~~~l~~~-----~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
++.++++. ..+.+++||.+++|+||+++++.+|+|.
T Consensus 157 -~l~~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~ 197 (258)
T PRK10696 157 -KLKAMPPKLLSDDGKHIVIRPLAYVAEKDIIKFAEAKEFPI 197 (258)
T ss_pred -cccccCCeeecCCCceeEEecCccCCHHHHHHHHHHcCCCE
Confidence 12233322 1356999999999999999999999994
|
|
| >cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-18 Score=161.32 Aligned_cols=158 Identities=23% Similarity=0.217 Sum_probs=112.5
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhC---CcEEEEEEeCCCCCh--hHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIG---DRLHCVFVDNGLLRY--KERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g---~~v~~v~id~g~~~~--~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
|++||+|||+||+++++++.+... .++.++|+|+|+... ++.+.+.+ +|+.+|++++++.... ... ...+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~---~~~-~~~~ 75 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVAD-LCAKLGIPLYILVVAL---APK-PGGN 75 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHH-HHHHcCCcEEEEeecc---ccC-CCCC
Confidence 689999999999999999988742 489999999998654 45666655 8999999999882211 001 1112
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCC---Ccccc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGL---PKDMK 374 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l---~~~~~ 374 (531)
++. .+...++..+.+.|+++| +++|++||+.+|++|+.. ..|.|. . ++.++ .....
T Consensus 76 ~~~---~~r~~r~~~l~~~a~~~~------~~~i~~Gh~~dD~~e~~l~~l~~g~~~------~---~l~~~~~~~~~~~ 137 (185)
T cd01992 76 LEA---AAREARYDFFAEIAKEHG------ADVLLTAHHADDQAETVLMRLLRGSGL------R---GLAGMPARIPFGG 137 (185)
T ss_pred HHH---HHHHHHHHHHHHHHHHcC------CCEEEEcCCcHHHHHHHHHHHHccCCc------c---cccCCCcccCCCC
Confidence 322 233446678889999888 899999999999988631 112110 0 11111 12346
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
..+++||.+++|+||+++++++|||. +..|++
T Consensus 138 ~~virPl~~~~k~eI~~~~~~~~l~~---~~~~~~ 169 (185)
T cd01992 138 GRLIRPLLGITRAEIEAYLRENGLPW---WEDPSN 169 (185)
T ss_pred CeEECCCCCCCHHHHHHHHHHcCCCe---EECCCC
Confidence 77999999999999999999999995 555544
|
This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus. |
| >PRK13981 NAD synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.5e-18 Score=185.01 Aligned_cols=201 Identities=19% Similarity=0.204 Sum_probs=147.3
Q ss_pred chhhhhhhhhhccccCc--cceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 208 NVLDEEVKCIKDTVGLE--DHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 208 ~~~~~~~~~i~~~v~~~--~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
.+.+.+...|++++... ++++|++|||+||+++|+|+.+++| .+|++++++....+..+.+.+.+ +|+.+|+++++
T Consensus 262 ~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~~~~~~~~~~a~~-~a~~lgi~~~~ 340 (540)
T PRK13981 262 EDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAA-LAKNLGVRYDI 340 (540)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCCCCCHHHHHHHHH-HHHHcCCeEEE
Confidence 34566667777776543 6899999999999999999999999 68999999987777777777766 89999999999
Q ss_pred EECchHHHHh---hcCCCCcccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcc
Q 039743 285 VDATDQFLSK---LKGVIDPETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHS 357 (531)
Q Consensus 285 vd~~~~f~~~---l~~~~~p~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~ 357 (531)
+++++.|..- +....+........+|. +..+++..|... ++++.||..- .| ...|+
T Consensus 341 i~i~~~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~--------~~lvlgt~n~--sE--~~~Gy----- 403 (540)
T PRK13981 341 IPIEPAFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKF--------GSLVLTTGNK--SE--MAVGY----- 403 (540)
T ss_pred EECHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhcc--------CCEEEeCCcc--CH--HHcCC-----
Confidence 9999765333 22111111111122343 233455555543 4577777432 22 22454
Q ss_pred cccccccccCCCCcccccceecccccCCHHHHHHHHHHcC-------CCccccccCCCCCCCccccccCCCCcchHHHHH
Q 039743 358 HTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILN-------VPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDIL 430 (531)
Q Consensus 358 ~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lg-------lp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~ 430 (531)
.|++|+++. .+.|+.+++|+||+++|+.+| +|+.++.+.|+++ | .+|+.+++.|+ .+
T Consensus 404 ---~t~~GD~~~-------~~~pi~~l~K~~v~~la~~~~~~~~~~~vp~~i~~~~psa~--l---~~~q~de~~l~-~Y 467 (540)
T PRK13981 404 ---ATLYGDMAG-------GFAPIKDVYKTLVYRLCRWRNTVSPGEVIPERIITKPPSAE--L---RPNQTDQDSLP-PY 467 (540)
T ss_pred ---eEecCCccc-------CccccCCCCHHHHHHHHHHHHhhcCCCcchHHHhCCCCCCC--C---CCCCcCccccC-CH
Confidence 788887765 789999999999999999999 9999999988776 3 47999999995 99
Q ss_pred hhhhHHHHHHHH
Q 039743 431 RQVDEIFIQSIK 442 (531)
Q Consensus 431 ~~~d~~~~~~l~ 442 (531)
+..|.++...+.
T Consensus 468 ~~lD~~l~~~~~ 479 (540)
T PRK13981 468 DVLDAILERLVE 479 (540)
T ss_pred HHHHHHHHHHHH
Confidence 999999766553
|
|
| >PRK13820 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=173.50 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=117.4
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCC-cEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhc--CC-C
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLK--GV-I 299 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~-~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~--~~-~ 299 (531)
.++|+||+|||+||+++++++++.+|. +|+|+|+|+|+. .+|.+.+.+ +|+++|++++++|.++.|.+..- .+ .
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~~-~~e~~~a~~-~a~~lGi~~~vvd~~eef~~~~i~~~i~~ 79 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQP-EEEIKEAEE-KAKKLGDKHYTIDAKEEFAKDYIFPAIKA 79 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCCC-hHHHHHHHH-HHHHcCCCEEEEeCHHHHHHHHHHHHHHh
Confidence 468999999999999999999998886 999999999963 456777766 89999999999999977753210 01 1
Q ss_pred Ccccccc-----hhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCC--CccccCCCCCCCCCcccccccccccCCCCcc
Q 039743 300 DPETKRK-----IIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYP--DVIESCPPPGTGRTHSHTIKSHHNVGGLPKD 372 (531)
Q Consensus 300 ~p~~kr~-----~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~--D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~ 372 (531)
++..+++ .|...+++.+.+.|++.| ++++++||+.. |+.. +.+ ++...
T Consensus 80 n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G------~~~IA~G~t~~gnDq~r----fe~---------------~~~a~ 134 (394)
T PRK13820 80 NALYEGYPLGTALARPLIAEKIVEVAEKEG------ASAIAHGCTGKGNDQLR----FEA---------------VFRAS 134 (394)
T ss_pred CccccCCcCcHHHHHHHHHHHHHHHHHHcC------CCEEEECCCCCcchHHH----HHH---------------hhHhh
Confidence 2222221 344446678888899888 89999999655 7652 111 12222
Q ss_pred cccceeccccc--CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 373 MKLKLIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 373 ~~~~ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+++++.|+++ ++|+|++++|+++|||.......|++
T Consensus 135 -~l~viaP~re~~ltK~ei~~ya~~~gip~~~~~~~~yS 172 (394)
T PRK13820 135 -DLEVIAPIRELNLTREWEIEYAKEKGIPVPVGKEKPWS 172 (394)
T ss_pred -cCeeeCchhccCCCHHHHHHHHHHcCCCCCcCCCCCcc
Confidence 4679999999 89999999999999997544455655
|
|
| >cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-17 Score=160.96 Aligned_cols=175 Identities=20% Similarity=0.209 Sum_probs=119.2
Q ss_pred EEE-eCCCCcHHHHHHHHHHCCCEEEEEeCCCChhc-cccCCCCEEEEcCCCCCCCCC--CC---CCC-hHHHHHHHHhC
Q 039743 9 LIL-DYGSQYTHLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPHSVHSP--DA---PAF-PAGFLEWALSN 80 (531)
Q Consensus 9 ~Il-D~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~-~~~~~~dgiIlsGGp~s~~~~--~~---~~~-~~~l~~~~~~~ 80 (531)
+|| ..|+.....++++++++|+++++++.+..... ....++|||||+||++..... .. ... ..++++.+.++
T Consensus 2 ~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~ 81 (238)
T cd01740 2 AVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAER 81 (238)
T ss_pred EEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhC
Confidence 444 55888888999999999999999987543211 124679999999998622111 11 111 34667777888
Q ss_pred CCcEEEeeHHHHHHHHH--cCCEEeecCccccee------eeEEEec-CCccccCCCCCceEEEEeeccCccccCC----
Q 039743 81 GVYVLGICYGLQLMVQK--LDGVVKVGEKQEYGR------MEILVER-SSGIFGNKKVGHHQVVWMSHGDEAVVLP---- 147 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~--~GG~v~~~~~~e~G~------~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~~v~~lp---- 147 (531)
++||||||+|+|+|+++ ++|.+.+.+..++.. ..+++.. ++++++.+.....+.+|.+|++.-.-.+
T Consensus 82 g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~ 161 (238)
T cd01740 82 GGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWQNRFVTLRVENNDSPFTKGYMEGEVLRIPVAHGEGRFYADDETL 161 (238)
T ss_pred CCeEEEECcHHHHHHHcCCCccccccCCCCceeccccCceEEEEEcCCCCceecCCCCCCEEEEEeECCceeeEcCHHHH
Confidence 99999999999999997 899888777666644 4455443 3567766322223899999997432111
Q ss_pred -----CCcEEE--------E----EeCCC---cEEEEEECCCcEEEEecCCCCCCC
Q 039743 148 -----DGFEVV--------A----RSQQG---AVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 148 -----~g~~vl--------a----~s~~~---~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
.+-.+- + .++++ .|+++.+++++++|++.|||+...
T Consensus 162 ~~l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~GrvlglMphPer~~~ 217 (238)
T cd01740 162 AELEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNEDGRVLGMMPHPERAVE 217 (238)
T ss_pred HHHHHCCCEEEEEcCCCCccccCCCCCCCChhcceEEEcCCCCEEEEcCChHHccc
Confidence 111110 0 13444 489999999999999999998743
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site |
| >PRK00509 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.6e-18 Score=173.68 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=117.3
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHh-----hcC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSK-----LKG 297 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~-----l~~ 297 (531)
.+||+||+|||+||+++++++++.+|.+|+|+|+|.|+. .|.+.+.+ +|+.+|+ +++++|+++.|.+. +..
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~--~dle~a~~-~A~~lGi~~~~viD~~~ef~~~~i~~~i~~ 78 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQG--EELEPIRE-KALKSGASEIYVEDLREEFVRDYVFPAIRA 78 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCH--HHHHHHHH-HHHHcCCCeEEEEcCHHHHHHHhHHHHHHh
Confidence 368999999999999999999998899999999999986 56777766 8999998 68888999777532 211
Q ss_pred CCCccccc-----chhhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccC--CCccccCCCCCCCCCcccccccccccCCC
Q 039743 298 VIDPETKR-----KIIGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLY--PDVIESCPPPGTGRTHSHTIKSHHNVGGL 369 (531)
Q Consensus 298 ~~~p~~kr-----~~~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~--~D~~es~~~~g~g~~~~~~ikt~~~~~~l 369 (531)
++...+ +.+|+. ..+.+.+.|++.| ++++++|++. +|+.. ++| ++
T Consensus 79 --n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G------~~~IA~G~t~kGnDq~r----f~~---------------g~ 131 (399)
T PRK00509 79 --NALYEGKYPLGTALARPLIAKKLVEIARKEG------ADAVAHGCTGKGNDQVR----FEL---------------GI 131 (399)
T ss_pred --ChHhcCcCCCchHHHHHHHHHHHHHHHHHcC------CCEEEeCCCcCCCCHHH----HHH---------------HH
Confidence 111112 235565 4456778888887 8999999988 77654 223 12
Q ss_pred Cccc-ccceecccccC---CHHHHHHHHHHcCCCccccccCCCC
Q 039743 370 PKDM-KLKLIEPLKLL---FKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 370 ~~~~-~~~ii~PL~~l---~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.+.. +++++.|++++ +|+|+|++|+++|||...-...|++
T Consensus 132 ~al~pel~VisPlre~~~~tK~eir~~A~~~Gipv~~~~~~~yS 175 (399)
T PRK00509 132 AALAPDLKVIAPWREWDLKSREELIAYAEEHGIPIPVTKKSPYS 175 (399)
T ss_pred HHhCCCCeeecchhhcCCCCHHHHHHHHHHcCCCCCCCCCCCCc
Confidence 2222 45799999996 9999999999999997544455665
|
|
| >PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=169.03 Aligned_cols=173 Identities=17% Similarity=0.157 Sum_probs=119.9
Q ss_pred CccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh-------
Q 039743 223 LEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL------- 295 (531)
Q Consensus 223 ~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l------- 295 (531)
++++|+||+|||+||+++|+++++. |.+++++|+++. ..+.+.+.+ +|+++||+++++|+++.|....
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~~-G~eV~av~~~~~---~~e~~~a~~-va~~LGI~~~vvd~~~~f~~~v~~~~~~~ 78 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQEQ-GYEIVGVTMRVW---GDEPQDARE-LAARMGIEHYVADERVPFKDTIVKNFIDE 78 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHc-CCcEEEEEecCc---chhHHHHHH-HHHHhCCCEEEEeChHHHHHHHHHHhHHH
Confidence 3579999999999999999999885 999999999874 234555555 8999999999999987665321
Q ss_pred --cCCCCcccccchhhHHH--HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCC--CCCCCCcccccccc-cccCC
Q 039743 296 --KGVIDPETKRKIIGKEF--ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPP--PGTGRTHSHTIKSH-HNVGG 368 (531)
Q Consensus 296 --~~~~~p~~kr~~~~~~~--~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~--~g~g~~~~~~ikt~-~~~~~ 368 (531)
.+.+ | ..|+.|+.. +..+.+.|+++| +++|++||+..+....... .+. .+..|.. +-+..
T Consensus 79 ~~~G~t-p--npC~~Cn~~iKf~~L~~~A~~~G------~~~IATGHyar~~~~~~~~~l~~g----~D~~kDQsyfl~~ 145 (362)
T PRK14664 79 YRQGRT-P--NPCVMCNPLFKFRMLIEWADKLG------CAWIATGHYSRLEERNGHIYIVAG----DDDKKDQSYFLWR 145 (362)
T ss_pred HHcCCC-C--CCchhhhHHHHHHHHHHHHHHcC------CCEEEECCccccccCCCeEEEEEc----CCCcchHHHHHHh
Confidence 1221 2 134777764 457888898888 8999999977542211100 011 1222222 22444
Q ss_pred CCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCcc
Q 039743 369 LPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLA 414 (531)
Q Consensus 369 l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la 414 (531)
++...--+++.||.+++|+|||++|+++|||. ...+..+.|-|+.
T Consensus 146 l~~~~l~~~ifPLg~~~K~evr~~A~~~gl~~-~a~k~dSq~iCFi 190 (362)
T PRK14664 146 LGQDILRRCIFPLGNYTKQTVREYLREKGYEA-KSKEGESMEVCFI 190 (362)
T ss_pred cCHHHHhHHhccCccCCHHHHHHHHHHcCCCC-CCCCCCCCcceee
Confidence 55443346999999999999999999999983 1244455677764
|
|
| >PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-17 Score=175.11 Aligned_cols=184 Identities=16% Similarity=0.224 Sum_probs=125.8
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChh--HHHHHHHHHHHhC----CCcEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYK--ERERVMDTFEKDL----HLPVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~--e~~~~~~~la~~l----gi~~~vvd~~~~f~~~ 294 (531)
++..+|+++++|||+||+|+++++++. |.+++++|+|+|..... +.+.+.. +++++ +++++++++.+.+.+.
T Consensus 174 ~g~~gk~lvllSGGiDS~va~~~~~kr-G~~v~~l~f~~g~~~~~~~~~~~a~~-l~~~~~~~~~~~l~~v~~~~~~~~i 251 (482)
T PRK01269 174 LGTQEDVLSLISGGFDSGVASYMLMRR-GSRVHYCFFNLGGAAHEIGVKQVAHY-LWNRYGSSHRVRFISVDFEPVVGEI 251 (482)
T ss_pred ccccCeEEEEEcCCchHHHHHHHHHHc-CCEEEEEEEecCCchhHHHHHHHHHH-HHHHhCccCCceEEEEecHHHHHHH
Confidence 466789999999999999999999887 99999999999986432 3333333 55544 4668888887765443
Q ss_pred hcCCCCcccccc-hhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc
Q 039743 295 LKGVIDPETKRK-IIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM 373 (531)
Q Consensus 295 l~~~~~p~~kr~-~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~ 373 (531)
+... |+.-++ ++.+.|+++...+|++.| ++.|++|++.+|... +|..|+..+....
T Consensus 252 ~~~~--~~~~~~~v~rR~ml~iA~~~A~~~g------a~~IvtG~~l~dvas---------------qtl~nl~~~~~~~ 308 (482)
T PRK01269 252 LEKV--DDGQMGVVLKRMMLRAASKVAERYG------IQALVTGEALGQVSS---------------QTLTNLRLIDNVT 308 (482)
T ss_pred HhcC--CCceecHHHHHHHHHHHHHHHHHcC------CCEEEECcChHhhhh---------------HHHHHHHhhhhhc
Confidence 3322 222233 333334555566666666 899999999999753 2223332222223
Q ss_pred ccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhh
Q 039743 374 KLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVD 434 (531)
Q Consensus 374 ~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d 434 (531)
++.+++||..++|.||.++|+++|++. +..++|.+|...- .-..|+..+ +.+++.+
T Consensus 309 ~~~v~rPLi~~dK~EIi~~a~~ig~~~---~s~~~p~~C~~~~-~~p~~~~~~-~~~~~~~ 364 (482)
T PRK01269 309 DTLILRPLIAMDKEDIIDLAREIGTED---FAKTMPEYCGVIS-KKPTVKAVK-EKIEAEE 364 (482)
T ss_pred CCceecCCcCCCHHHHHHHHHHhCChh---hcccCCCCceeeC-CCCcCCCCH-HHHHHHh
Confidence 467899999999999999999999864 3456677774332 355677777 6666544
|
|
| >COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=165.69 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=144.0
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHH-HhC-----CCcEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFE-KDL-----HLPVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la-~~l-----gi~~~vvd~~~~f~~~ 294 (531)
++..+|+++.+|||+||.|+++++.|. |.+++++|++++-...++..+-...++ ..+ .+.++++++.+.. ..
T Consensus 172 vGt~Gk~l~LlSGGIDSPVA~~l~mkR-G~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~-~~ 249 (383)
T COG0301 172 VGTQGKVLLLLSGGIDSPVAAWLMMKR-GVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFTEVQ-EE 249 (383)
T ss_pred cccCCcEEEEEeCCCChHHHHHHHHhc-CCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchHHHH-HH
Confidence 566789999999999999999999998 999999999876655554443333344 222 4678888887654 33
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
+....++...+-++.+.|+++..++|++.| +..|++|....++.. +|..|+..+....+
T Consensus 250 i~~~~~~~y~~v~~rR~M~riA~~iae~~g------~~aIvtGEsLGQVAS---------------QTl~nL~~i~~~t~ 308 (383)
T COG0301 250 ILEKVPESYRCVLLKRMMYRIAEKLAEEFG------AKAIVTGESLGQVAS---------------QTLENLRVIDSVTN 308 (383)
T ss_pred HHhhcCccceehHHHHHHHHHHHHHHHHhC------CeEEEecCcchhhhH---------------hHHHHHHHHHhccC
Confidence 444444445555666668899999999988 899999999988864 55566655555567
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhh
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVD 434 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d 434 (531)
..+++||..++|+||.++|+++|..+ +..+|+..||.....+...|..++ ...++.+
T Consensus 309 ~pIlRPLI~~DK~eIi~~Ar~IgT~e--iSi~p~e~cc~~f~p~~p~t~~~~-~~~e~~e 365 (383)
T COG0301 309 TPVLRPLIGLDKEEIIEIARRIGTYE--ISIEPPEDCCVIFAPPTPKTKPKL-IEAEKLE 365 (383)
T ss_pred CceeccccCCCHHHHHHHHHHhCChh--hhccCCCCCcCccCCCCCccCcch-hHHHHHh
Confidence 78999999999999999999999987 788899999998887777776666 4444433
|
|
| >COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-17 Score=165.93 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=117.9
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCCh--hHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRY--KERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~--~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
+++++||||||+||+++++++.+..+ .++.++|||+|+... .+.+.+ +.+|+.+|+++.+.+....+......
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~--- 96 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELV-EKLCEKLGIPLIVERVTDDLGRETLD--- 96 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccCceEEEEEecCCCCCccchHHHHH-HHHHHHhCCceEEEEEEeeccccccC---
Confidence 57999999999999999999999844 599999999999864 333444 45899999999999887654221110
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCCCcc---cc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGLPKD---MK 374 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l~~~---~~ 374 (531)
-..-|.+|+..++.++.+.|++.| ++.|++|||.+|.+|+.. +.|.+ . . ++.+++.. .+
T Consensus 97 ~~~~c~~c~~~R~~~l~~~a~~~g------~~~i~tgH~~dD~~et~lm~l~~g~~---~---~---~l~~~~~~~~~~~ 161 (298)
T COG0037 97 GKSICAACRRLRRGLLYKIAKELG------ADKIATGHHLDDQAETFLMNLLRGSG---L---R---GLRGMPPKRPFEG 161 (298)
T ss_pred CCChhHHHHHHHHHHHHHHHHHcC------CCeEEeccCcHHHHHHHHHHHHcCcH---h---h---HHhhCCcccccCC
Confidence 011245666778889999999998 899999999999999731 12321 0 0 12233322 23
Q ss_pred c-ceecccccCCHHHHHHHHHHcCCCc
Q 039743 375 L-KLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 375 ~-~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
. .+++||..+.++||+.++...|+|.
T Consensus 162 ~~~~iRPL~~~~~~ei~~~~~~~~l~~ 188 (298)
T COG0037 162 GLLIIRPLLYVREKEIELYAKEKGLPY 188 (298)
T ss_pred CCeeeeecccCCHHHHHHHHHHcCCCE
Confidence 3 5999999999999999999999984
|
|
| >TIGR00364 exsB protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-17 Score=155.44 Aligned_cols=157 Identities=23% Similarity=0.289 Sum_probs=108.9
Q ss_pred eeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHH--HH-hhcCCC-Ccc
Q 039743 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQF--LS-KLKGVI-DPE 302 (531)
Q Consensus 227 vvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f--~~-~l~~~~-~p~ 302 (531)
++|++|||+||+++++++++. |.++.++++++|.....|.+.+.+ +|+.+|+++++++++... .. .+.+.. .+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~-g~~v~~~~~~~~~~~~~e~~~a~~-~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDE-GYEVHAITFDYGQRHSRELESARK-IAEALGIEHHVIDLSLLKQLGGSALTDESEIPP 78 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHc-CCcEEEEEEECCCCCHHHHHHHHH-HHHHhCCCeEEEechhhcccccccccCCCCCCC
Confidence 589999999999999999886 889999999999876667777765 899999999999997421 00 011100 011
Q ss_pred ---------cccchhhHH--HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc
Q 039743 303 ---------TKRKIIGKE--FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 303 ---------~kr~~~~~~--~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
.++++.|+. |+.+...+|++.| ++.|++|++.+|+.+. +..+|+ +...+++..+.+ .
T Consensus 79 ~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g------~~~v~~G~~~~d~~~~-~d~~~~--f~~~~~~~~~~~---~ 146 (201)
T TIGR00364 79 QKSNEEDTLPNTFVPGRNAIFLSIAASYAEALG------AEAVITGVCETDFSGY-PDCRDE--FVKAFNHALNLG---M 146 (201)
T ss_pred cCccccCCCCCeeecCCcHHHHHHHHHHHHHCC------CCEEEEEeccCcCCCC-CCCcHH--HHHHHHHHHHhh---c
Confidence 123333333 3477788888887 8999999999997431 112331 112223322221 1
Q ss_pred ccccceecccccCCHHHHHHHHHHcC
Q 039743 372 DMKLKLIEPLKLLFKDEVRQLGRILN 397 (531)
Q Consensus 372 ~~~~~ii~PL~~l~K~eVr~la~~lg 397 (531)
...+++++||.+++|.||+++|+++|
T Consensus 147 ~~~~~i~~Pl~~~~K~eI~~la~~~g 172 (201)
T TIGR00364 147 LTPVKIRAPLMDLTKAEIVQLADELG 172 (201)
T ss_pred CCCeEEEECCcCCCHHHHHHHHHHcC
Confidence 23467999999999999999999999
|
This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown. |
| >COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=147.32 Aligned_cols=184 Identities=21% Similarity=0.263 Sum_probs=128.1
Q ss_pred CCEEEEEeCCCCc-HHHHHHHHHHCCCEEEEEeCCCChhccccC-CCCEEEEcCCCCCCCCCC--CCCC-----hHHHHH
Q 039743 5 PELVLILDYGSQY-THLITRRIRSLSILSLCLSGTCSLDDITAK-NPRVVILSGGPHSVHSPD--APAF-----PAGFLE 75 (531)
Q Consensus 5 ~~~I~IlD~G~~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~-~~dgiIlsGGp~s~~~~~--~~~~-----~~~l~~ 75 (531)
++||+||-|.+.+ ....+++++.+|++++.++.++.. .. ++|+|++|||.| |.+- .-++ ..+-++
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~----~~~~~d~vv~pGGFS--yGDyLr~Gaiaa~~~v~~~v~ 75 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLL----LGRDFDGVVLPGGFS--YGDYLRAGAIAAIAPVMDEVR 75 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecc----cCCCccEEEEcCCCC--cccccCcchHHhhHHHHHHHH
Confidence 3689999996555 556889999999999999875432 23 689999999998 3221 1111 122334
Q ss_pred HHHhCCCcEEEeeHHHHHHHH--HcCCEEeecCcccce--eeeEEEec-CCccccCCCCCceEEEEeeccCccc------
Q 039743 76 WALSNGVYVLGICYGLQLMVQ--KLDGVVKVGEKQEYG--RMEILVER-SSGIFGNKKVGHHQVVWMSHGDEAV------ 144 (531)
Q Consensus 76 ~~~~~~iPvLGIC~G~Qlla~--~~GG~v~~~~~~e~G--~~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~~v~------ 144 (531)
.+.+.++|+||||.|+|+|.+ .+.|...++....|- +..+++.. ++++++++...+.+.+.-+|++.-.
T Consensus 76 ~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~ 155 (231)
T COG0047 76 EFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYADDET 155 (231)
T ss_pred HHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEecCCCHHHHhcCCCceEEEEEeecceeEEccHHH
Confidence 445579999999999999997 367888887666554 44455553 4678888877556888889986531
Q ss_pred --cCCCCcEEEEE------------eCCC---cEEEEEECCCcEEEEecCCCCCC-----Ccccchhhhhhe
Q 039743 145 --VLPDGFEVVAR------------SQQG---AVAAVENREKRLFGLQYHPEVTH-----SPEGMETLRYFL 194 (531)
Q Consensus 145 --~lp~g~~vla~------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~-----~~~g~~i~~~F~ 194 (531)
+|-+.-+++.. ++++ .|+++.+.+++++|++.|||+.. +.+|.++|++.+
T Consensus 156 l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~~Dg~~lF~s~~ 227 (231)
T COG0047 156 LAELEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGNVLGMMPHPERASESLLGGEDGLRLFRSAR 227 (231)
T ss_pred HHHHhhCCeEEEEEecCCCceeeeeCCCCChhhceeEEcCCCCEEEecCCchhhhhcccCCchHHHHHHHHH
Confidence 22222223322 3344 48999999999999999999853 446788888765
|
|
| >PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-16 Score=152.88 Aligned_cols=188 Identities=20% Similarity=0.259 Sum_probs=126.8
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChhc-cccCCCCEEEEcCCCCCCC--CCCCC---CCh---HHHHH
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPHSVH--SPDAP---AFP---AGFLE 75 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~-~~~~~~dgiIlsGGp~s~~--~~~~~---~~~---~~l~~ 75 (531)
+||+||.+ |+......+++++++|+.+++++.....+. ....++|+|+|+||.+... ..... .+. .+.++
T Consensus 4 ~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik 83 (261)
T PRK01175 4 IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIE 83 (261)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHH
Confidence 57999998 666677889999999999998886432211 1246799999999975211 11111 111 14566
Q ss_pred HHHhCCCcEEEeeHHHHHHHHH--cCC----------EEeecCcccc--eeeeEEEec-CCccccCCCCCceEEEEeecc
Q 039743 76 WALSNGVYVLGICYGLQLMVQK--LDG----------VVKVGEKQEY--GRMEILVER-SSGIFGNKKVGHHQVVWMSHG 140 (531)
Q Consensus 76 ~~~~~~iPvLGIC~G~Qlla~~--~GG----------~v~~~~~~e~--G~~~v~~~~-~~~l~~~~~~~~~~~v~~~H~ 140 (531)
.+.++++||||||+|+|+|+++ +.| ++.++....| -|..+.+.. .+++++++... .+.++..|+
T Consensus 84 ~f~~~gkpVLGICnG~QlLa~~GlLpg~~~~~~~~~~~L~~N~s~~f~~~~~~~~v~~~~s~~~~~~~~~-~~~~piah~ 162 (261)
T PRK01175 84 EFIDEGYPIIGICNGFQVLVELGLLPGFDEIAEKPEMALTVNESNRFECRPTYLKKENRKCIFTKLLKKD-VFQVPVAHA 162 (261)
T ss_pred HHHHCCCeEEEECHHHHHHHHCCCCCCCCccccCCcceEeecCCCCeEEeeeEEEECCCCChhHhccCCC-EEEEeeEcC
Confidence 7778899999999999999984 444 5555544444 355555554 56888888733 477788898
Q ss_pred Ccccc---------CC-CCcEEEEE------------eCCC---cEEEEEECCCcEEEEecCCCCCCC------------
Q 039743 141 DEAVV---------LP-DGFEVVAR------------SQQG---AVAAVENREKRLFGLQYHPEVTHS------------ 183 (531)
Q Consensus 141 ~~v~~---------lp-~g~~vla~------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~~------------ 183 (531)
+.-.- |- .+..++-. ++++ .||++.+++++++|++.|||+...
T Consensus 163 eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~~IAGi~~~~G~vlglMpHPEr~~~~~~~~~~~~~~~ 242 (261)
T PRK01175 163 EGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGNVIGLMPHPERAFYGYQHPYWEKEED 242 (261)
T ss_pred CcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCChhhcceeECCCCCEEEEcCCHHHhhchhhccccccccC
Confidence 75322 11 12222222 3344 589999999999999999997532
Q ss_pred -cccchhhhhhe
Q 039743 184 -PEGMETLRYFL 194 (531)
Q Consensus 184 -~~g~~i~~~F~ 194 (531)
.+|..||+|++
T Consensus 243 ~~~g~~~f~~~~ 254 (261)
T PRK01175 243 YGDGKIFFDSLI 254 (261)
T ss_pred CCchHHHHHHHH
Confidence 26888888875
|
|
| >PRK13526 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=146.35 Aligned_cols=167 Identities=19% Similarity=0.267 Sum_probs=115.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCC--CCCCCCCChHHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSV--HSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~--~~~~~~~~~~~l~~~~~~~~iP 83 (531)
.+|+||.+.+.+.. ..++++.+|+++.++. +.+++ .++|+||||||+++. .-.....+. +.++...+ ++|
T Consensus 3 ~~igVLalqG~~~E-h~~al~~lG~~v~~v~---~~~~l--~~~D~LILPGG~~t~~~~ll~~~~l~-~~Ik~~~~-~kp 74 (179)
T PRK13526 3 QKVGVLAIQGGYQK-HADMFKSLGVEVKLVK---FNNDF--DSIDRLVIPGGESTTLLNLLNKHQIF-DKLYNFCS-SKP 74 (179)
T ss_pred cEEEEEECCccHHH-HHHHHHHcCCcEEEEC---CHHHH--hCCCEEEECCChHHHHHHHhhhcCcH-HHHHHHHc-CCc
Confidence 57999999888865 7899999999877764 23333 578999999997643 111112233 34444444 679
Q ss_pred EEEeeHHHHHHHHH---cC---CEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeC
Q 039743 84 VLGICYGLQLMVQK---LD---GVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQ 157 (531)
Q Consensus 84 vLGIC~G~Qlla~~---~G---G~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~ 157 (531)
++|||.|||+|++. +| |+|.++. ||...-+....-. +.+. . ++..+.....+.+..++.+++|+.+
T Consensus 75 ilGICaG~qlL~~~s~~Lg~idg~V~Rn~---~Grq~~sf~~~~~-~~~~--~--~~~vFiRAP~i~~~~~~v~vla~~~ 146 (179)
T PRK13526 75 VFGTCAGSIILSKGEGYLNLLDLEVQRNA---YGRQVDSFVADIS-FNDK--N--ITGVFIRAPKFIVVGNQVDILSKYQ 146 (179)
T ss_pred EEEEcHHHHHHHccCCCCCCccEEEEEcC---CCCccceeeeecC-cCCc--e--EEEEEEcCceEeEcCCCcEEEEEEC
Confidence 99999999999993 33 6676663 4433222221111 1222 3 8888999999999999999999997
Q ss_pred CCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 158 QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 158 ~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+.+| |++ +++++++-||||.+.+ .++.+.|+
T Consensus 147 ~~~v-~v~--q~~~l~~~FHPElt~d---~r~h~~f~ 177 (179)
T PRK13526 147 NSPV-LLR--QANILVSSFHPELTQD---PTVHEYFL 177 (179)
T ss_pred CEEE-EEE--ECCEEEEEeCCccCCC---chHHHHHh
Confidence 6544 444 5899999999999876 34555564
|
|
| >COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-17 Score=165.96 Aligned_cols=185 Identities=17% Similarity=0.190 Sum_probs=123.8
Q ss_pred EEEEE----eCCCCcHHHHHHHHHHCC----CEEEEEeCCC-Chhc--c-ccC-CCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 7 LVLIL----DYGSQYTHLITRRIRSLS----ILSLCLSGTC-SLDD--I-TAK-NPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 7 ~I~Il----D~G~~~~~~i~r~l~~~G----~~~~v~~~~~-~~~~--~-~~~-~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|+++ +.-+.|. ++..+|+.+| +.+.+.+.+. +.++ . ... .+|||++|||.+..--+. ....
T Consensus 290 ~IalVGKYv~l~DaY~-Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~RG~eG----kI~A 364 (533)
T COG0504 290 TIALVGKYVELPDAYK-SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYRGVEG----KIAA 364 (533)
T ss_pred EEEEEECCcCchhHHH-HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcCchHH----HHHH
Confidence 47777 4445553 5666777655 4566666543 2111 1 011 289999999998422111 3467
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHHHcCCEEeec------------------------------CcccceeeeEEEecCCcc
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQKLDGVVKVG------------------------------EKQEYGRMEILVERSSGI 123 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~------------------------------~~~e~G~~~v~~~~~~~l 123 (531)
+++|+++++|+||||+|||++...+--.|... .....|.+++.+.+++..
T Consensus 365 i~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~gT~a 444 (533)
T COG0504 365 IRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPGTLA 444 (533)
T ss_pred HHHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCCcHH
Confidence 79999999999999999999987542211110 123456666666666544
Q ss_pred ccCCCCCceEEEEeeccCccc-----cC-CCCcEEEEEeCC-CcEEEEEECCCcE-EEEecCCCCCCCc-ccchhhhhhe
Q 039743 124 FGNKKVGHHQVVWMSHGDEAV-----VL-PDGFEVVARSQQ-GAVAAVENREKRL-FGLQYHPEVTHSP-EGMETLRYFL 194 (531)
Q Consensus 124 ~~~~~~~~~~~v~~~H~~~v~-----~l-p~g~~vla~s~~-~~v~ai~~~~~~i-~gvQFHPE~~~~~-~g~~i~~~F~ 194 (531)
.+-+... ...--+-|.|.+. .+ ..|+.+.+.+++ ..+++++.+++|+ +|+|||||+.+.+ .++.+|..|+
T Consensus 445 ~~lY~~~-~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv 523 (533)
T COG0504 445 AKLYGKD-EIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFV 523 (533)
T ss_pred HHHhCCC-eeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHH
Confidence 4444332 2566677887763 22 358999999986 5899999999885 5999999998766 6899999998
Q ss_pred eccc
Q 039743 195 FDVC 198 (531)
Q Consensus 195 ~~~~ 198 (531)
++|
T Consensus 524 -~Aa 526 (533)
T COG0504 524 -KAA 526 (533)
T ss_pred -HHH
Confidence 444
|
|
| >PLN00200 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-17 Score=167.34 Aligned_cols=149 Identities=17% Similarity=0.239 Sum_probs=111.3
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECchHHHHhhc--C-CCC
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDATDQFLSKLK--G-VID 300 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~~~f~~~l~--~-~~~ 300 (531)
+||+||+|||+||+++++++++.+|.+|+|+++|.|+ ...|.+.+.+ +|+.+|++ ++++|+.+.|.+..- . ..|
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq-~~~el~~a~~-~A~~lGi~~~~v~dl~~ef~~~~i~p~i~~N 83 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQ-GIEELEGLEA-KAKASGAKQLVVKDLREEFVRDYIFPCLRAN 83 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCC-ChHHHHHHHH-HHHHcCCCEEEEEeCHHHHHHhhcCHHHHcC
Confidence 5899999999999999999988779999999999997 3456677766 89999997 588899988854321 0 123
Q ss_pred cc-cccchhhH-----HHHHHHHHHHHHhhhhcCCCCcEEEecccC--CCccccCCCCCCCCCcccccccccccCCCCcc
Q 039743 301 PE-TKRKIIGK-----EFICIFDAFAHDLEQKLGKKPAYLVQGTLY--PDVIESCPPPGTGRTHSHTIKSHHNVGGLPKD 372 (531)
Q Consensus 301 p~-~kr~~~~~-----~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~--~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~ 372 (531)
+. ++|+.|+. ...+.+.+.|++.| ++++++|++. +|+.. +++ ++.+.
T Consensus 84 a~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G------~~~VahG~tgkGnDq~r----f~~---------------~~~al 138 (404)
T PLN00200 84 AIYEGKYLLGTSMARPLIAKAMVDIAKEVG------ADAVAHGATGKGNDQVR----FEL---------------TFFAL 138 (404)
T ss_pred CcccceeccccchhhHHHHHHHHHHHHHcC------CCEEEeCCcCCCCcHHH----HHH---------------HHHHh
Confidence 34 33444444 23456677788887 8999999987 77643 222 12222
Q ss_pred c-ccceecccccC---CHHHHHHHHHHcCCCc
Q 039743 373 M-KLKLIEPLKLL---FKDEVRQLGRILNVPE 400 (531)
Q Consensus 373 ~-~~~ii~PL~~l---~K~eVr~la~~lglp~ 400 (531)
. +++++.|++++ +|+|+|++|+++|||.
T Consensus 139 ~pel~ViaPlre~~~~~r~e~~~~A~~~Gipv 170 (404)
T PLN00200 139 NPELKVVAPWREWDIKGREDLIEYAKKHNIPV 170 (404)
T ss_pred CCCCeeeCchhhcCCCCHHHHHHHHHHcCCCC
Confidence 2 45799999995 3999999999999994
|
|
| >KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-17 Score=155.56 Aligned_cols=172 Identities=24% Similarity=0.343 Sum_probs=115.5
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCC---------CChhHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGL---------LRYKERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~---------~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
..+|+||+||||||+|+|+|+++. |.++.+|||-+.. ..+.+.++|.. +|++|+|+++.|++..+|+..
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll~~~-g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~-Vc~~LnI~~~~Vnf~kEYW~~ 82 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLLAAR-GYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKR-VCKQLNIPLHQVNFVKEYWND 82 (377)
T ss_pred cceEEEEecCCchHHHHHHHHHhc-CCCeeEEeeeccccccccccCCCchhhHHHHHH-HHHHhCCeeEEEeeHHHHHHH
Confidence 468999999999999999999998 9999999996543 22345566665 999999999999998777654
Q ss_pred h---------cCC-CCcccccchhhHHHHH---HHHHHHHHhhhhcCCCCcEEEecccCCCccccCC-----CCCCCCCc
Q 039743 295 L---------KGV-IDPETKRKIIGKEFIC---IFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP-----PPGTGRTH 356 (531)
Q Consensus 295 l---------~~~-~~p~~kr~~~~~~~~~---~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~-----~~g~g~~~ 356 (531)
+ .|. .||. +.||.+++ .++....++| +++|++||=+.-+.+-.. ...+
T Consensus 83 Vfs~~L~~Y~~G~TPNPD----I~CN~~IKFg~~~~~a~en~~------~d~latGHYAr~~~~~~~~~~~~l~~~---- 148 (377)
T KOG2805|consen 83 VFSPFLEEYENGRTPNPD----ILCNKHIKFGKFFKHAIENLG------YDWLATGHYARVVLEDEDNAESHLLIS---- 148 (377)
T ss_pred HHHHHHHHHhcCCCCCCC----ccccceeeccHHHHHHHHhcC------CCeEEeeeeeeeecCcccCcceeEeec----
Confidence 3 232 3565 66777554 4444444555 899999983222211100 0011
Q ss_pred ccccccc-cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCc
Q 039743 357 SHTIKSH-HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGL 413 (531)
Q Consensus 357 ~~~ikt~-~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~l 413 (531)
.+..|.+ +.+..+....--+.+-||..+.|+||+++|++.|+| +..+..+.|-|.
T Consensus 149 ~d~~KDQt~FL~~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~--~aeK~eSqGICF 204 (377)
T KOG2805|consen 149 KDMVKDQTYFLSTINQTQLKRLLFPLGCLTKSEVKKLAKQAGFP--NAEKPESQGICF 204 (377)
T ss_pred ccccCCceeEeecccHHHHHhhhccCcccCHHHHHHHHHhcCCc--cccCcccceeEE
Confidence 1111211 223344333333578999999999999999999999 355555556554
|
|
| >PRK04527 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=164.00 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=113.6
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHhhc------
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSKLK------ 296 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~l~------ 296 (531)
.++|+||+|||+||+++++++++. |.+|+|+++|.|+....|.+.+.+ +|+.+|+ +|+++|+++.|.+..-
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~-G~~Viavt~d~gq~~~~El~~a~~-~A~~lG~~~~~viD~~eef~e~vi~p~i~a 79 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQER-GYAVHTVFADTGGVDAEERDFIEK-RAAELGAASHVTVDGGPAIWEGFVKPLVWA 79 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHc-CCcEEEEEEEeCCCCHHHHHHHHH-HHHHcCCCeEEEecCHHHHHHHHHHHHHhc
Confidence 468999999999999999999885 999999999999988788888876 8999998 6999999988765431
Q ss_pred -----C-CCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEeccc--CCCccccCCCCCCCCCcccccccccccCC
Q 039743 297 -----G-VIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTL--YPDVIESCPPPGTGRTHSHTIKSHHNVGG 368 (531)
Q Consensus 297 -----~-~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~--~~D~~es~~~~g~g~~~~~~ikt~~~~~~ 368 (531)
| ..+|...||++ .+.+.+.|++.| ++++++|++ .+|+.. ++| +
T Consensus 80 Na~y~G~yPl~~~nR~~~----~~~l~e~A~~~G------~~~IA~G~tgkgnDq~r----frp---------------g 130 (400)
T PRK04527 80 GEGYQGQYPLLVSDRYLI----VDAALKRAEELG------TRIIAHGCTGMGNDQVR----FDL---------------A 130 (400)
T ss_pred chhhcCCCCCccccHHHH----HHHHHHHHHHCC------CCEEEecCcCCCCchhh----ccH---------------H
Confidence 1 11232234443 245667788877 899999998 788765 444 3
Q ss_pred CCcccccceeccccc--C----CHHHHHHHHHHcCCCcc
Q 039743 369 LPKDMKLKLIEPLKL--L----FKDEVRQLGRILNVPEQ 401 (531)
Q Consensus 369 l~~~~~~~ii~PL~~--l----~K~eVr~la~~lglp~~ 401 (531)
+.+..++++++||++ + .++|..+||++.|+|..
T Consensus 131 ~~Al~el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 131 VKALGDYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred HHHhhcCCccchHHHhcCcccccHHHHHHHHHHcCCCCC
Confidence 444447789999999 5 45666799999999964
|
|
| >PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=167.74 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=113.6
Q ss_pred hhhhccccCccceeeccCCCCCHHHHHHHHHHH----hCCcEEEEEEeCCCCChh-HHHHHHHHHHHhCCCcEEEEECch
Q 039743 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKA----IGDRLHCVFVDNGLLRYK-ERERVMDTFEKDLHLPVTCVDATD 289 (531)
Q Consensus 215 ~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~----~g~~v~~v~id~g~~~~~-e~~~~~~~la~~lgi~~~vvd~~~ 289 (531)
..+++.+.+.++++||+|||+||+++++++.+. .|.+++++|+|||+.... +.++..+.+|+.+||++++++++.
T Consensus 6 ~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~ 85 (436)
T PRK10660 6 LTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQL 85 (436)
T ss_pred HHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 344555666789999999999999999999753 267999999999997543 233444559999999999988753
Q ss_pred HHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCccccccccccc
Q 039743 290 QFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNV 366 (531)
Q Consensus 290 ~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~ 366 (531)
.. .+. +.+. .....+|..|.+.+++ .++|++|||.||.+||.. ..|.| ..++
T Consensus 86 ~~----~~~-~~e~---~AR~~Ry~~~~~~~~~--------~~~l~~aHh~DDq~ET~L~~L~rG~g---------~~gL 140 (436)
T PRK10660 86 DQ----RGL-GIEA---AARQARYQAFARTLLP--------GEVLVTAQHLDDQCETFLLALKRGSG---------PAGL 140 (436)
T ss_pred cC----CCC-CHHH---HHHHHHHHHHHHHHHh--------CCEEEEcCchHHHHHHHHHHHHcCCC---------hhhc
Confidence 21 111 1121 1113345555554432 358999999999999842 23332 1345
Q ss_pred CCCCcc---cccceecccccCCHHHHHHHHHHcCCCc
Q 039743 367 GGLPKD---MKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 367 ~~l~~~---~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
.||++. ....+++||.+++|+||.++++..|+|.
T Consensus 141 ~gm~~~~~~~~~~liRPLL~~~k~ei~~ya~~~~l~~ 177 (436)
T PRK10660 141 SAMAEVSPFAGTRLIRPLLARSREELEQYAQAHGLRW 177 (436)
T ss_pred cccceecccCCCcEeCCCccCCHHHHHHHHHHcCCCE
Confidence 566543 3467999999999999999999999995
|
|
| >PRK14561 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=150.81 Aligned_cols=141 Identities=23% Similarity=0.254 Sum_probs=98.7
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhc----CCCCc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLK----GVIDP 301 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~----~~~~p 301 (531)
||+|++|||+||+++++++.+. .++.+++++.|+. .+.+.+.+ +|+.+|+++++++++..+..... ....|
T Consensus 2 kV~ValSGG~DSslll~~l~~~--~~v~a~t~~~g~~--~e~~~a~~-~a~~lGi~~~~v~~~~~~~~~~~~~~~~~~~P 76 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF--YDVELVTVNFGVL--DSWKHARE-AAKALGFPHRVLELDREILEKAVDMIIEDGYP 76 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc--CCeEEEEEecCch--hHHHHHHH-HHHHhCCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence 6999999999999999988765 6789999999984 35566655 89999999999999875533221 11112
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceeccc
Q 039743 302 ETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPL 381 (531)
Q Consensus 302 ~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL 381 (531)
. ..+...++..+...+ .| ++++++|||.+|..|+. .+|| ++ ++.....+++++||
T Consensus 77 ~---~~~~~l~~~~l~~~a--~g------~~~Ia~G~n~DD~~et~--~r~~------~~------a~~~~~gi~iirPL 131 (194)
T PRK14561 77 N---NAIQYVHEHALEALA--EE------YDVIADGTRRDDRVPKL--SRSE------IQ------SLEDRKGVQYIRPL 131 (194)
T ss_pred C---chhHHHHHHHHHHHH--cC------CCEEEEEecCCCcchhc--cHHH------Hh------hhhcCCCcEEEeeC
Confidence 2 122222333444433 55 78999999999987742 2331 12 22222234689999
Q ss_pred ccCCHHHHHHHHHHc
Q 039743 382 KLLFKDEVRQLGRIL 396 (531)
Q Consensus 382 ~~l~K~eVr~la~~l 396 (531)
..++|.|||++++++
T Consensus 132 ~~~~K~eI~~la~~l 146 (194)
T PRK14561 132 LGFGRKTIDRLVERL 146 (194)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999987
|
|
| >cd01999 Argininosuccinate_Synthase Argininosuccinate synthase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-16 Score=162.50 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=111.6
Q ss_pred eeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECchHHHH-----hhcCCCC
Q 039743 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDATDQFLS-----KLKGVID 300 (531)
Q Consensus 227 vvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~~~f~~-----~l~~~~~ 300 (531)
|++|+|||+||+++++++++..+.+|+|+|+|+|+.. ++.+.+++ +|+.+|++ ++++|+++.|.+ .+.. +
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~~-~~~e~a~~-~a~~lG~~~~~viD~~~ef~~~~i~~~i~a--n 76 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPE-EEIEAIEE-KALKLGAKKHVVVDLREEFVEDYIFPAIQA--N 76 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCcc-hhHHHHHH-HHHHcCCCEEEEeccHHHHHHHhhHHHHHh--C
Confidence 6899999999999999999986679999999999743 33355554 89999996 999999887753 2221 2
Q ss_pred ccccc-c----hhhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCC--CccccCCCCCCCCCcccccccccccCCCCcc
Q 039743 301 PETKR-K----IIGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYP--DVIESCPPPGTGRTHSHTIKSHHNVGGLPKD 372 (531)
Q Consensus 301 p~~kr-~----~~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~--D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~ 372 (531)
....+ + .+|+. +.+.+.+.|++.| ++++++|++.. |... ..+ ++...
T Consensus 77 ~~~~g~y~l~t~l~R~~i~~~l~~~A~~~G------a~~VA~G~t~~gnDq~r----f~~---------------~~~al 131 (385)
T cd01999 77 ALYEGTYPLGTALARPLIAKALVEVAKEEG------ADAVAHGCTGKGNDQVR----FEL---------------AFYAL 131 (385)
T ss_pred ccccCCCcCCcHhHHHHHHHHHHHHHHHcC------CCEEEeCCCCCCCcHHH----HHH---------------HHHhh
Confidence 22222 1 22444 4567778888887 89999999853 5432 111 12222
Q ss_pred -cccceecccccC---CHHHHHHHHHHcCCCccccccCCCC
Q 039743 373 -MKLKLIEPLKLL---FKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 373 -~~~~ii~PL~~l---~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.+++++.|++++ +|+|++++|+++|||.....+.||+
T Consensus 132 ~pel~ViaPlre~~~~sr~ev~~~A~~~Gip~~~~~~~pyS 172 (385)
T cd01999 132 NPDLKIIAPWRDWEFLSREEEIEYAEEHGIPVPVTKKKPYS 172 (385)
T ss_pred CCCCEEEcchhhhhcCCHHHHHHHHHHcCCCCcccCCCCCc
Confidence 257899999998 9999999999999997544456766
|
The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity |
| >TIGR00032 argG argininosuccinate synthase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-16 Score=161.92 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=113.7
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHhh--cCCCCcc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSKL--KGVIDPE 302 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~l--~~~~~p~ 302 (531)
||++|+|||+||+++++++++. |.+|+|+|+|+|+. ..|.+.+.+ +|+.+|+ +++++|+++.|.+.. ..+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~-g~~V~av~id~Gq~-~~e~~~a~~-~a~~lGi~~~~viD~~~ef~~~~~~~~i~--- 74 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK-GYEVIAYTADVGQP-EEDIDAIPE-KALEYGAENHYTIDAREEFVKDYGFAAIQ--- 74 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc-CCEEEEEEEecCCC-hHHHHHHHH-HHHHhCCCeEEEEeCHHHHHHhhchhhhc---
Confidence 6899999999999999999987 99999999999964 567777765 8999998 899999998875541 1111
Q ss_pred cccchhhH----------HHHHHHHHHHHHhhhhcCCCCcEEEecccCC--CccccCCCCCCCCCcccccccccccCCCC
Q 039743 303 TKRKIIGK----------EFICIFDAFAHDLEQKLGKKPAYLVQGTLYP--DVIESCPPPGTGRTHSHTIKSHHNVGGLP 370 (531)
Q Consensus 303 ~kr~~~~~----------~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~--D~~es~~~~g~g~~~~~~ikt~~~~~~l~ 370 (531)
..+++.|+ .+++.+.++|++.| ++.+++|++.. |... +.+++ ..
T Consensus 75 ~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G------~~~Ia~G~t~~gnDqvr---f~r~~---------------~~ 130 (394)
T TIGR00032 75 ANAFYEGTYPLSTALARPLIAKKLVEAAKKEG------ANAVAHGCTGKGNDQER---FERSI---------------RL 130 (394)
T ss_pred CCccccCcccccchhhHHHHHHHHHHHHHHcC------CCEEEECccCCcchHHH---HHHHH---------------HH
Confidence 12233332 35566788888887 89999999764 5432 22221 11
Q ss_pred cccccceeccccc--CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 371 KDMKLKLIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 371 ~~~~~~ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
...++++++||++ ++|+|++++++++|+|..+....|++
T Consensus 131 ~~~~l~viaPLrew~l~r~ei~~ya~~~Gip~~~~~~~pys 171 (394)
T TIGR00032 131 LNPDLKVIAPWRDLNFTREEEIEYAIQCGIPYPMSKEKPYS 171 (394)
T ss_pred hCCCCeEECchhhcCCCHHHHHHHHHHcCCCeeEecCCCCc
Confidence 1225679999966 99999999999999997554445553
|
argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria. |
| >PRK02628 nadE NAD synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-16 Score=173.86 Aligned_cols=200 Identities=19% Similarity=0.131 Sum_probs=144.3
Q ss_pred hhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHH---hC---CcEEEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 039743 209 VLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKA---IG---DRLHCVFVDNGLLRYKERERVMDTFEKDLHL 280 (531)
Q Consensus 209 ~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~---~g---~~v~~v~id~g~~~~~e~~~~~~~la~~lgi 280 (531)
..+.++..+++++.. .++++|++|||+||+++++++.++ +| .++++|+++.-..++...+.+.+ +|+.||+
T Consensus 344 ~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~mp~~~ss~~s~~~a~~-la~~LGi 422 (679)
T PRK02628 344 AYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVA-LMKALGV 422 (679)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEECCCCCCCHHHHHHHHH-HHHHhCC
Confidence 344555666666532 579999999999999999999998 45 79999999644344445556655 9999999
Q ss_pred cEEEEECchHHHHhhcCCCCc-------c--cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCC
Q 039743 281 PVTCVDATDQFLSKLKGVIDP-------E--TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPG 351 (531)
Q Consensus 281 ~~~vvd~~~~f~~~l~~~~~p-------~--~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g 351 (531)
+++++++++.+...+..+..+ + ....++++.+..+++.+|.+.| +..|.+| |..|. ..|
T Consensus 423 ~~~~i~I~~~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g------~lvl~Tg----n~sE~--~~G 490 (679)
T PRK02628 423 TAREIDIRPAALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHG------GIVIGTG----DLSEL--ALG 490 (679)
T ss_pred eEEEEEcHHHHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcC------cEEEcCC----chhhH--HhC
Confidence 999999987653333222211 1 1124577777778888888877 5555555 45553 234
Q ss_pred CCCCccccccccc-ccCCCCcccccceecccccCCHHHHHHHHHHc-----------CCCccccccCCCCCCCccccccC
Q 039743 352 TGRTHSHTIKSHH-NVGGLPKDMKLKLIEPLKLLFKDEVRQLGRIL-----------NVPEQFLKRHPFPGPGLAVRVLG 419 (531)
Q Consensus 352 ~g~~~~~~ikt~~-~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~l-----------glp~~~~~~~P~~~p~la~r~~g 419 (531)
+ .|++ |+++- .+.|+.+++|.+|+++++.+ ++|++++.+.|+++ -.++
T Consensus 491 y--------~T~~~GD~~~-------~~~~~~~l~Kt~v~~l~~~~~~~~~~~~~~~~ip~~i~~~~psae-----L~p~ 550 (679)
T PRK02628 491 W--------CTYGVGDHMS-------HYNVNASVPKTLIQHLIRWVIASGQFDEAVSEVLLDILDTEISPE-----LVPA 550 (679)
T ss_pred c--------eecCCCCccc-------ccccccCCcHHHHHHHHHHHHhhccccccchhhHHHHhcCCCCcc-----ccCC
Confidence 4 5667 66544 78999999999999999998 58888998888765 2356
Q ss_pred -------CCCcchHHHHHhhhhHHHHHHHH
Q 039743 420 -------DVTEGNSLDILRQVDEIFIQSIK 442 (531)
Q Consensus 420 -------~vt~~~l~~~~~~~d~~~~~~l~ 442 (531)
+.|++.+ -.+...|.++...++
T Consensus 551 ~~~g~~~q~ded~l-gpY~~~D~~l~~~~~ 579 (679)
T PRK02628 551 DKEGEIVQSTEDII-GPYELQDFFLYYFLR 579 (679)
T ss_pred CCCCCCCCcchhcc-CCHHHHHHHHHHHHh
Confidence 6788888 478888888766554
|
|
| >PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-16 Score=150.18 Aligned_cols=167 Identities=23% Similarity=0.245 Sum_probs=97.4
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHH---HHhh--c--C
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQF---LSKL--K--G 297 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f---~~~l--~--~ 297 (531)
|++|+||||+||+++++++.+. |++++++++|+|+....|.+.+++ +|+.+|+ +|+++|++... .+.+ . .
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~-~~~v~al~~~YGq~~~~El~~a~~-i~~~l~v~~~~~i~l~~~~~~~~s~L~~~~~~ 78 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKE-GYEVYALTFDYGQRHRRELEAAKK-IAKKLGVKEHEVIDLSFLKEIGGSALTDDSIE 78 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH--SEEEEEEEESSSTTCHHHHHHHH-HHHHCT-SEEEEEE-CHHHHCSCHHHHHTT--
T ss_pred CEEEEeCCCHHHHHHHHHHHHc-CCeEEEEEEECCCCCHHHHHHHHH-HHHHhCCCCCEEeeHHHHHhhCCCcccCCCcC
Confidence 6899999999999999999887 899999999999998888888876 9999999 99999998211 0111 0 1
Q ss_pred CCCcccccch-------hhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCC
Q 039743 298 VIDPETKRKI-------IGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGL 369 (531)
Q Consensus 298 ~~~p~~kr~~-------~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l 369 (531)
+..++..... ..|. |..+...+|...| ++.|+.|.+.+|.... +..++ ++++....+-..
T Consensus 79 v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g------~~~i~~G~~~~D~~~y-pDc~~-----~F~~~~~~~~~~ 146 (209)
T PF06508_consen 79 VPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLG------AEAIYIGVNAEDASGY-PDCRP-----EFIDAMNRLLNL 146 (209)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHT-------SEEEE---S-STT---GGGSH-----HHHHHHHHHHHH
T ss_pred CcccccccCCCCceEEecCcHHHHHHHHHHHHHCC------CCEEEEEECcCccCCC-CCChH-----HHHHHHHHHHHh
Confidence 1110000001 1111 3345555666665 8999999999884211 11222 333332211111
Q ss_pred CcccccceecccccCCHHHHHHHHHHcCCCccccccC
Q 039743 370 PKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRH 406 (531)
Q Consensus 370 ~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~ 406 (531)
.....+++..|+.+++|.||.+++.++|.|.+..|.-
T Consensus 147 ~~~~~v~i~~P~~~~tK~eiv~~~~~lg~~~~~T~SC 183 (209)
T PF06508_consen 147 GEGGPVRIETPLIDLTKAEIVKLGVELGVPLELTWSC 183 (209)
T ss_dssp HHTS--EEE-TTTT--HHHHHHHHHHTTHHHHH-B-S
T ss_pred cCCCCEEEEecCCCCCHHHHHHHHHHcCCCHHHccCC
Confidence 1224678999999999999999999999887766654
|
In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A. |
| >cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=138.24 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=113.6
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCC--cEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHH----hhcCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGD--RLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLS----KLKGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~--~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~----~l~~~~ 299 (531)
+++|++|||+||+|+++++.++... ++.++|+|+|...++..+.+.+ +++.+|+++++++....+.. ...+..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDR-VAERYGLPLVVVRPPDSPAEGLALGLKGFP 79 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHH-HHHHhCCCeEEECCCccHHHHHHHhhhccC
Confidence 5899999999999999999998543 8999999999976655555554 89999999999988754321 011111
Q ss_pred CcccccchhhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccccccee
Q 039743 300 DPETKRKIIGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLI 378 (531)
Q Consensus 300 ~p~~kr~~~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii 378 (531)
.+....+.||.. ....+.+.+++.+ .+.+++|++.+|..++.... . . .+.....+...+
T Consensus 80 ~~~~~~~~c~~~~K~~~~~~~~~~~~------~~~~~~G~r~de~~~r~~~~--------~-~-----~~~~~~~~~~~~ 139 (173)
T cd01713 80 LPSPDRRWCCRILKVEPLRRALKELG------VVAWITGIRRDESARRALLP--------V-V-----WTDDGKGGILKV 139 (173)
T ss_pred CccccHHHhhccccchHHHHHHHhcC------CeEEEEEeccccchhhhhCc--------c-c-----cccCCCCCcEEE
Confidence 232233344444 3446666676655 78999999999987743210 0 0 012222355799
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCC
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPF 408 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~ 408 (531)
+||.+++++||++++++.|+|..-++++-+
T Consensus 140 ~Pl~~w~~~di~~~~~~~~l~~~~ly~~g~ 169 (173)
T cd01713 140 NPLLDWTYEDVWAYLARHGLPYNPLYDQGY 169 (173)
T ss_pred cchhcCCHHHHHHHHHHcCCCCCHHHHcCC
Confidence 999999999999999999999655555443
|
PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti |
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-16 Score=149.69 Aligned_cols=177 Identities=24% Similarity=0.361 Sum_probs=126.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCC--CCC-CCCCChHHHHHHHHhCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSV--HSP-DAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~--~~~-~~~~~~~~l~~~~~~~~i 82 (531)
+.+-+||+|+++.+++-++||.+|+.+..+....+ + .+.|-+|+||-..-. .|. ....+.. -++...+.++
T Consensus 2 ~vv~~ld~~agn~~si~nal~hlg~~i~~v~~P~D---I--~~a~rLIfPGVGnfg~~~D~L~~~Gf~e-plr~Yiesgk 75 (541)
T KOG0623|consen 2 SVVTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGD---I--LNADRLIFPGVGNFGPAMDVLNRTGFAE-PLRKYIESGK 75 (541)
T ss_pred ceEEEEecCCccHHHHHHHHHhcCceeeeccCchh---h--ccCceEeecCcccchHHHHHHhhhhhHH-HHHHHHhcCC
Confidence 34678999999999999999999998876643322 3 456899999954311 111 1122333 3455567799
Q ss_pred cEEEeeHHHHHHHHH------------cCCEEeec-----CcccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc
Q 039743 83 YVLGICYGLQLMVQK------------LDGVVKVG-----EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV 145 (531)
Q Consensus 83 PvLGIC~G~Qlla~~------------~GG~v~~~-----~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~ 145 (531)
|++|||.|.|+|..- +.|.|.+. ..++.||....+..++.+|...+.. ++|+.|++...+
T Consensus 76 PfmgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~p~~---~~YFVHSyl~~e 152 (541)
T KOG0623|consen 76 PFMGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDVPNR---HVYFVHSYLNRE 152 (541)
T ss_pred CeEeehhhHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccCCcccccccCCCc---eEEEEeeecccc
Confidence 999999999998752 23444443 3578999999888777777766654 899999985533
Q ss_pred ----C-CCCcEEEEEeCCC---cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhee
Q 039743 146 ----L-PDGFEVVARSQQG---AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLF 195 (531)
Q Consensus 146 ----l-p~g~~vla~s~~~---~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~ 195 (531)
+ +++|++ |....+ .+.|+. .++++++|||||.+. +.|...+++|+.
T Consensus 153 k~~~len~~wki-at~kYG~E~Fi~ai~--knN~~AtQFHPEKSG-~aGL~vl~~FL~ 206 (541)
T KOG0623|consen 153 KPKSLENKDWKI-ATCKYGSESFISAIR--KNNVHATQFHPEKSG-EAGLSVLRRFLH 206 (541)
T ss_pred cccCCCCCCceE-eeeccCcHHHHHHHh--cCceeeEeccccccc-chhHHHHHHHHh
Confidence 3 346775 444433 567765 478999999999987 789999999994
|
|
| >COG0603 Predicted PP-loop superfamily ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-15 Score=141.12 Aligned_cols=166 Identities=24% Similarity=0.311 Sum_probs=115.0
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcC--CCCc
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKG--VIDP 301 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~--~~~p 301 (531)
.+|++|.||||.||+++++++.+. +++|+++++|+|+....|.+.+++ +|+.||+++++||++-. ..+.+ ++++
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~~-~~ev~alsfdYGQrh~~Ele~A~~-iak~lgv~~~iid~~~~--~~~~~saLtd~ 77 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKKE-GYEVHALTFDYGQRHRKELEAAKE-LAKKLGVPHHIIDVDLL--GEIGGSALTDD 77 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHhc-CCEEEEEEeeCCCCcHHHHHHHHH-HHHHcCCCeEEechhHH--hhcCCCcCcCC
Confidence 468999999999999999999998 899999999999999888888876 99999999999999632 22321 2221
Q ss_pred -----ccc-------c--chhhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccccccc
Q 039743 302 -----ETK-------R--KIIGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNV 366 (531)
Q Consensus 302 -----~~k-------r--~~~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~ 366 (531)
... . --..|. |..+...+|..+| ++.|+.|-+..|.... +..+| ..|+.....
T Consensus 78 ~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g------~~~I~~Gv~~~D~sgY-PDcrp-----efi~a~~~~ 145 (222)
T COG0603 78 SIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALG------ADAIIIGVNEEDFSGY-PDCRP-----EFIEALNEA 145 (222)
T ss_pred CccccccccccccCcceEeccccHHHHHHHHHHHHHcC------CCeEEEEecccccCCC-CCCCH-----HHHHHHHHH
Confidence 111 0 001111 3333344454444 8999999988876321 23344 344443222
Q ss_pred CCCCcccccc-eecccccCCHHHHHHHHHHcCCCcccccc
Q 039743 367 GGLPKDMKLK-LIEPLKLLFKDEVRQLGRILNVPEQFLKR 405 (531)
Q Consensus 367 ~~l~~~~~~~-ii~PL~~l~K~eVr~la~~lglp~~~~~~ 405 (531)
-.+.....++ +..||.+++|.|+.++|.++|.|.+..|.
T Consensus 146 ~~l~~~~~~~~i~aPl~~l~Ka~iv~l~~elg~~~~~T~S 185 (222)
T COG0603 146 LNLGTEKGVRIIHAPLMELTKAEIVKLADELGVPLELTWS 185 (222)
T ss_pred HHhhccCCccEEeCCeeeccHHHHHHHHHHhCCcchhceE
Confidence 2222223344 69999999999999999999999877665
|
|
| >cd01995 ExsB ExsB is a transcription regulator related protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=140.03 Aligned_cols=144 Identities=28% Similarity=0.314 Sum_probs=101.2
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCccccc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKR 305 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr 305 (531)
|+++++|||+||+++++++++. |.+++++++|+|.....+.+.+.+ +|+.+| ++..++.. +
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~g-~~~~~~~~---------------~- 61 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE-GYEVHALSFDYGQRHAKEEEAAKL-IAEKLG-PSTYVPAR---------------N- 61 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc-CCcEEEEEEECCCCChhHHHHHHH-HHHHHC-CCEEEeCc---------------C-
Confidence 6899999999999999999987 889999999999765556655554 888888 33333211 0
Q ss_pred chhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCC
Q 039743 306 KIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLF 385 (531)
Q Consensus 306 ~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~ 385 (531)
..+...+.+.|.+.| ++.|++||+.+|..... ..+| ..+++...+..+.....+++++||.+++
T Consensus 62 ----~~~~~~l~~~a~~~g------~~~i~~G~~~~d~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~PL~~~~ 125 (169)
T cd01995 62 ----LIFLSIAAAYAEALG------AEAIIIGVNAEDYSGYP-DCRP-----EFIEAMNKALNLGTENGIKIHAPLIDLS 125 (169)
T ss_pred ----HHHHHHHHHHHHHCC------CCEEEEeeccCccCCCC-CCCH-----HHHHHHHHHHHhhcCCCeEEEeCcccCC
Confidence 124456777788777 89999999999965311 0111 1122211111122334568999999999
Q ss_pred HHHHHHHHHHcCCCccccc
Q 039743 386 KDEVRQLGRILNVPEQFLK 404 (531)
Q Consensus 386 K~eVr~la~~lglp~~~~~ 404 (531)
|.||+++++++|+|....|
T Consensus 126 K~ei~~~~~~~g~~~~~s~ 144 (169)
T cd01995 126 KAEIVRLGGELGVPLELTW 144 (169)
T ss_pred HHHHHHHHhHcCCChhhee
Confidence 9999999999999864443
|
It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown |
| >COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=131.80 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=116.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCC-CEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC--CCCCChHHHHHHHHhCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLS-ILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP--DAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G-~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~--~~~~~~~~l~~~~~~~~i 82 (531)
++|.||-+.+... ...+.+++++ +++..+....++ .+.||+|||||.|+.... ....+...+ +...+.|+
T Consensus 1 m~IGVLalQG~v~-EH~~~l~~~~~~e~~~Vk~~~dL-----~~~d~LIiPGGESTTi~rL~~~~gl~e~l-~~~~~~G~ 73 (194)
T COG0311 1 MKIGVLALQGAVE-EHLEALEKAGGAEVVEVKRPEDL-----EGVDGLIIPGGESTTIGRLLKRYGLLEPL-REFIADGL 73 (194)
T ss_pred CeEEEEEecccHH-HHHHHHHhhcCCceEEEcCHHHh-----ccCcEEEecCccHHHHHHHHHHcCcHHHH-HHHHHcCC
Confidence 3699999877764 4678899985 777665443333 456999999999854322 112233334 44556699
Q ss_pred cEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCC--c---------cccCCCCCceEEEEeeccCccccCCCCcE
Q 039743 83 YVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSS--G---------IFGNKKVGHHQVVWMSHGDEAVVLPDGFE 151 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~--~---------l~~~~~~~~~~~v~~~H~~~v~~lp~g~~ 151 (531)
|+||.|.||-+|++..-+ ....+..|..++++.+|. + -++++.....+++.+.....+.++.++.+
T Consensus 74 Pv~GTCAGlIlLakei~~---~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~~~~avFIRAP~I~~vg~~V~ 150 (194)
T COG0311 74 PVFGTCAGLILLAKEILD---GPEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGLPFPFPAVFIRAPVIEEVGDGVE 150 (194)
T ss_pred ceEEechhhhhhhhhhcC---CCCCcccceEEEEEEccccccccccceeeEEeecccCCCcceEEEEEcceeehhcCcce
Confidence 999999999999975543 123345676777666442 1 12223222115667888888888888999
Q ss_pred EEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhh
Q 039743 152 VVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYF 193 (531)
Q Consensus 152 vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F 193 (531)
++|+-++..|++ ++++++++-||||.+.+..=+++|.++
T Consensus 151 vLa~l~~~iVav---~qgn~LatsFHPELT~D~r~Heyf~~~ 189 (194)
T COG0311 151 VLATLDGRIVAV---KQGNILATSFHPELTDDTRLHEYFLDM 189 (194)
T ss_pred EeeeeCCEEEEE---EeCCEEEEecCccccCCccHHHHHHHH
Confidence 999988755555 457999999999999875434444433
|
|
| >PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-13 Score=131.93 Aligned_cols=173 Identities=18% Similarity=0.310 Sum_probs=105.4
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChh-ccccCCCCEEEEcCCCCCCCCCCC-----------CCChHH
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLD-DITAKNPRVVILSGGPHSVHSPDA-----------PAFPAG 72 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~-~~~~~~~dgiIlsGGp~s~~~~~~-----------~~~~~~ 72 (531)
+||+|+-| |+......+++++.+|++++++..+...+ +..+.++|+|+|+||.+.-....+ +.+..+
T Consensus 2 pkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~ 81 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDA 81 (259)
T ss_dssp -EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHH
Confidence 57888866 66668889999999999999987654221 223678999999999883111111 122334
Q ss_pred HHHHHHhC-CCcEEEeeHHHHHHHHH--cCC----------EEeecCcccc--eeeeEEEecCCc--cccCCCCCceEEE
Q 039743 73 FLEWALSN-GVYVLGICYGLQLMVQK--LDG----------VVKVGEKQEY--GRMEILVERSSG--IFGNKKVGHHQVV 135 (531)
Q Consensus 73 l~~~~~~~-~iPvLGIC~G~Qlla~~--~GG----------~v~~~~~~e~--G~~~v~~~~~~~--l~~~~~~~~~~~v 135 (531)
+ +.+.++ +.|+||||.|+|+|.++ +++ ++.++....| .|..+.+..+++ .++++. . +.+
T Consensus 82 i-~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~~~~~~~~~~L~~N~s~~fe~rwv~~~v~~~s~~~~~~~~~-~--~~l 157 (259)
T PF13507_consen 82 I-REFLERPGGFVLGICNGFQILVELGLLPGGEIKDSEQSPALTPNASGRFESRWVNLVVNENSPSIFLRGLE-G--IVL 157 (259)
T ss_dssp H-HHHHHCTT-EEEEECHHHHHHCCCCCSTT------TT--EEE--TTSS-EEEEEEEEE--SSTTCCCTTTT-C--EEE
T ss_pred H-HHHHhcCCCeEEEEchHhHHHHHhCcCCCccccccCCCcEEcCCCCCCeEEEEEEEEEecCCcceecCCCC-E--EEE
Confidence 4 444555 99999999999999985 677 6776655544 455554434443 334443 3 788
Q ss_pred EeeccCccccC---------CCCcEEEEEe-C-------------C---CcEEEEEECCCcEEEEecCCCCCC
Q 039743 136 WMSHGDEAVVL---------PDGFEVVARS-Q-------------Q---GAVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 136 ~~~H~~~v~~l---------p~g~~vla~s-~-------------~---~~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
+..|++.-... -+.-.+.... + + ..||++.+++++++|++.|||+..
T Consensus 158 PiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NPNGS~~~IAGics~~GrvlglMpHPEr~~ 230 (259)
T PF13507_consen 158 PIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNPNGSVNNIAGICSPDGRVLGLMPHPERAF 230 (259)
T ss_dssp EEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSSS--GGGEEEEE-TTSSEEEESSBCCGTT
T ss_pred EEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCCCCCccceeEEEcCCCCEEEEcCChHHhC
Confidence 88888653222 2333444332 2 2 359999999999999999999864
|
|
| >PRK05253 sulfate adenylyltransferase subunit 2; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=136.95 Aligned_cols=173 Identities=16% Similarity=0.075 Sum_probs=118.6
Q ss_pred hhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC---CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEE
Q 039743 209 VLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG---DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCV 285 (531)
Q Consensus 209 ~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g---~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vv 285 (531)
...+.+..|++.+...+++++++|||+||+|+++|+.+++. ..+.++|+|+|...++..+.+ +.+|+.+|++++++
T Consensus 12 le~esi~iLrea~~~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~-d~~a~~~gl~l~v~ 90 (301)
T PRK05253 12 LEAESIHILREVAAEFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFR-DRRAKELGLELIVH 90 (301)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHH-HHHHHHhCCCEEEE
Confidence 33455666777766567999999999999999999999864 378999999998766544444 45899999999998
Q ss_pred ECchHHHHhhcCCCCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccccc
Q 039743 286 DATDQFLSKLKGVIDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHH 364 (531)
Q Consensus 286 d~~~~f~~~l~~~~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~ 364 (531)
...+.. ..+...+....|.||+.+. .-+.+.+++.+ ++.+++|+..+|-..+.. ..+.++.
T Consensus 91 ~~~~~i---~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g------~da~~~G~RrDE~~~Ra~---------e~~fs~r 152 (301)
T PRK05253 91 SNPEGI---ARGINPFRHGSAKHTNAMKTEGLKQALEKYG------FDAAFGGARRDEEKSRAK---------ERIFSFR 152 (301)
T ss_pred eChHHH---hcCCCCCCCChHHHHHHHHHHHHHHHHHHcC------CCEEEeccccchhhhhcc---------Ccccccc
Confidence 776543 2233222233456776654 56677777776 899999999988543210 0011100
Q ss_pred ------ccCCC-C----------cccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 365 ------NVGGL-P----------KDMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 365 ------~~~~l-~----------~~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
..... | ..-..-.+.||.+++..||.+|.+..|||.
T Consensus 153 ~~~~~wd~~~q~Pelw~~~~~~~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~ 205 (301)
T PRK05253 153 DEFGQWDPKNQRPELWNLYNGRINKGEHIRVFPLSNWTELDIWQYIERENIPI 205 (301)
T ss_pred ccccccCccccChhhhhhccccccCCCeEEEeehhhCCHHHHHHHHHHcCCCC
Confidence 00000 0 001123579999999999999999999995
|
|
| >PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-14 Score=131.06 Aligned_cols=167 Identities=20% Similarity=0.267 Sum_probs=103.1
Q ss_pred EEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHHHHhCC-CcEEE
Q 039743 10 ILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEWALSNG-VYVLG 86 (531)
Q Consensus 10 IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~~~~~~-iPvLG 86 (531)
||.+.+.+. ...+.|+++|.++..+....++ .+.||||||||.|++...- ...+...+ +.+.+.+ +||||
T Consensus 1 VLALQG~~~-EH~~~l~~lg~~~~~Vr~~~dL-----~~~dgLIiPGGESTti~~ll~~~gL~~~l-~~~~~~g~~Pv~G 73 (188)
T PF01174_consen 1 VLALQGAFR-EHIRMLERLGAEVVEVRTPEDL-----EGLDGLIIPGGESTTIGKLLRRYGLFEPL-REFIRSGSKPVWG 73 (188)
T ss_dssp EESSSSSHH-HHHHHHHHTTSEEEEE-SGGGG-----TT-SEEEE-SS-HHHHHHHHHHTTHHHHH-HHHHHTT--EEEE
T ss_pred CCccccChH-HHHHHHHHcCCCeEEeCCHHHH-----ccCCEEEECCCcHHHHHHHHHHcCCHHHH-HHHHHcCCCceee
Confidence 345555553 5678999999988766543333 4569999999988543211 12223334 4444556 99999
Q ss_pred eeHHHHHHHHHcCCEEeecCcccceeeeEEEecCC-----------ccccCCCCCceEEEEeeccCccccCC--CCcEEE
Q 039743 87 ICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSS-----------GIFGNKKVGHHQVVWMSHGDEAVVLP--DGFEVV 153 (531)
Q Consensus 87 IC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~-----------~l~~~~~~~~~~~v~~~H~~~v~~lp--~g~~vl 153 (531)
+|.||-+|++...+. .....|..++++.+|. .-+.++... +++.+.....|.++. ++.+++
T Consensus 74 TCAGlIlLa~~v~~~----~q~~Lg~ldi~V~RNafGrQ~~SFe~~l~i~~~~~~--~~avFIRAP~I~~v~~~~~v~vl 147 (188)
T PF01174_consen 74 TCAGLILLAKEVEGQ----GQPLLGLLDITVRRNAFGRQLDSFEADLDIPGLGEP--FPAVFIRAPVIEEVGSPEGVEVL 147 (188)
T ss_dssp ETHHHHHHEEEECSS----CCTSS--EEEEEETTTTCSSSCEEEEEEEETTTESE--EEEEESS--EEEEE--TTTEEEE
T ss_pred hhHHHHHhhhhhhhc----ccccccceeEEEEccccccchhcEEEEEEeecCCCc--EEEEEcCCcEEEEeecccccccc
Confidence 999999999854433 3344677777766542 112233334 888888998888776 789999
Q ss_pred EEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 154 ARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 154 a~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|..++..| |++ +++++++-||||.+.+ +.++.+.|+
T Consensus 148 a~~~g~iV-av~--qgn~latsFHPELT~D--~~r~H~yFl 183 (188)
T PF01174_consen 148 AELDGKIV-AVR--QGNILATSFHPELTDD--DTRIHEYFL 183 (188)
T ss_dssp EEETTEEE-EEE--ETTEEEESS-GGGSST--HCHHHHHHH
T ss_pred cccccceE-EEE--ecCEEEEEeCCcccCc--hhHHHHHHH
Confidence 98886544 444 5899999999999864 345666665
|
The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A. |
| >PRK08576 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.5e-13 Score=138.99 Aligned_cols=171 Identities=21% Similarity=0.194 Sum_probs=113.0
Q ss_pred hhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHH
Q 039743 214 VKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLS 293 (531)
Q Consensus 214 ~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~ 293 (531)
.+.++++ + .++++|++|||+||+++++++.++.+ ++.++|+|+|...+...+.+. .+|+.+|+++++.+.+...
T Consensus 226 ~~~Lr~~-~-~~rVvVafSGGKDStvLL~La~k~~~-~V~aV~iDTG~e~pet~e~~~-~lae~LGI~lii~~v~~~~-- 299 (438)
T PRK08576 226 IKFLRKF-E-EWTVIVPWSGGKDSTAALLLAKKAFG-DVTAVYVDTGYEMPLTDEYVE-KVAEKLGVDLIRAGVDVPM-- 299 (438)
T ss_pred HHHHHHc-C-CCCEEEEEcChHHHHHHHHHHHHhCC-CCEEEEeCCCCCChHHHHHHH-HHHHHcCCCEEEcccCHHH--
Confidence 3344443 2 34899999999999999999999866 599999999987665555554 4899999999884443221
Q ss_pred hhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc
Q 039743 294 KLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM 373 (531)
Q Consensus 294 ~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~ 373 (531)
...+...|...+..|+....+.+.+.+++++ .+.+++|+. +|...+.. ..| .....+.+. .
T Consensus 300 ~~~~~g~p~~~~rcCt~lK~~pL~raake~g------~~~iatG~R-~dES~~R~-~~p-----~v~~~~~~~------~ 360 (438)
T PRK08576 300 PIEKYGMPTHSNRWCTKLKVEALEEAIRELE------DGLLVVGDR-DGESARRR-LRP-----PVVERKTNF------G 360 (438)
T ss_pred HhhhcCCCCcccchhhHHHHHHHHHHHHhCC------CCEEEEEee-HHHhHHhh-cCC-----cccccccCC------C
Confidence 1223333443333455445567788888777 789999985 33221110 111 000111111 1
Q ss_pred ccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 374 KLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 374 ~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
....++||.+++.+||..+.+..|||..-++..-|+
T Consensus 361 ~v~rI~PL~~Wte~DV~~YI~~~gLP~npLY~~Gy~ 396 (438)
T PRK08576 361 KILVVMPIKFWSGAMVQLYILMNGLELNPLYYKGFY 396 (438)
T ss_pred CeEEEeChhhCCHHHHHHHHHHhCCCCCcHHhCCCC
Confidence 245899999999999999999999997666665554
|
|
| >cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=110.75 Aligned_cols=103 Identities=27% Similarity=0.329 Sum_probs=80.8
Q ss_pred eeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccc
Q 039743 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRK 306 (531)
Q Consensus 227 vvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~ 306 (531)
++|++|||+||+++++++.+. +.++.++|+|+|+.. +.+.+.+ +|++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~-~~~~~~~~~~~~~~~--~~~~~~~-~~~~----------------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL-GYQVIAVTVDHGISP--RLEDAKE-IAKE----------------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh-CCCEEEEEEcCCCcc--cHHHHHH-HHHH-----------------------------
Confidence 589999999999999999997 668999999999875 4445544 5555
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccc
Q 039743 307 IIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLK 382 (531)
Q Consensus 307 ~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~ 382 (531)
.+++.+.+.|++.| ++++++||+++|..|+. + . .+.++|+.+.......++++|+.
T Consensus 48 ----~r~~~~~~~a~~~g------~~~i~~g~~~~D~~~~~----~----~--~~~~~~~~~~~~~~~~~~~~Pl~ 103 (103)
T cd01986 48 ----AREEAAKRIAKEKG------AETIATGTRRDDVANRA----L----G--LTALLNLTVTLSGAGIQSLEPLI 103 (103)
T ss_pred ----HHHHHHHHHHHHcC------CCEEEEcCCcchHHHHH----H----H--HHHHhcCCCCcccCcceEeecCC
Confidence 45567778888877 89999999999999853 2 1 12267777777777888999974
|
The domain forms a apha/beta/apha fold which binds to Adenosine group.. |
| >TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=140.96 Aligned_cols=189 Identities=17% Similarity=0.214 Sum_probs=121.9
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCCh--------hcc--ccCCCCEEEEcCCCCCC--CCCCCCC----
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSL--------DDI--TAKNPRVVILSGGPHSV--HSPDAPA---- 68 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~--------~~~--~~~~~dgiIlsGGp~s~--~~~~~~~---- 68 (531)
++|+|+-| |+......+++++++|+.++++..+.-. +.+ ...++++|+++||.+.- .+...-|
T Consensus 978 pkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~ 1057 (1239)
T TIGR01857 978 PRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAI 1057 (1239)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHH
Confidence 68999977 5555777999999999998887754311 111 14789999999999831 1111001
Q ss_pred ----ChHHHHHHHHhCCCcEEEeeHHHHHHHHH--cC-C----------EEeecCcccc--eeeeEEEec-CCccccCCC
Q 039743 69 ----FPAGFLEWALSNGVYVLGICYGLQLMVQK--LD-G----------VVKVGEKQEY--GRMEILVER-SSGIFGNKK 128 (531)
Q Consensus 69 ----~~~~l~~~~~~~~iPvLGIC~G~Qlla~~--~G-G----------~v~~~~~~e~--G~~~v~~~~-~~~l~~~~~ 128 (531)
-..+-++.+.+++.|+||||.|||+|.+. +. | +..++....| .|..+++.. .+++++++.
T Consensus 1058 ~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v~~~v~~~~s~~~~~~~ 1137 (1239)
T TIGR01857 1058 LRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIVRTRIASTNSPWLSGVS 1137 (1239)
T ss_pred hhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeeeEEEECCCCChhHhcCC
Confidence 01223334446899999999999999985 21 2 3333433333 455555543 468888887
Q ss_pred CCceEEEEeeccCccccCCC---------CcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCCC
Q 039743 129 VGHHQVVWMSHGDEAVVLPD---------GFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 129 ~~~~~~v~~~H~~~v~~lp~---------g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
....+.++.+|+..-...++ |..++-. +++| .|+++.+++++++|++.||||...
T Consensus 1138 ~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPNGS~~~IaGi~s~dGrvlg~MpHpER~~~ 1217 (1239)
T TIGR01857 1138 VGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITSPDGRIFGKMGHSERYGD 1217 (1239)
T ss_pred CCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCCCChhhhhEeECCCCCEEEECCCcccccC
Confidence 44458999999976432221 2222211 3444 488999999999999999998642
Q ss_pred c--------ccchhhhhhe
Q 039743 184 P--------EGMETLRYFL 194 (531)
Q Consensus 184 ~--------~g~~i~~~F~ 194 (531)
. .|..||++.+
T Consensus 1218 ~~~~~~~g~~~~~iF~~~v 1236 (1239)
T TIGR01857 1218 GLFKNIPGNKDQHLFASGV 1236 (1239)
T ss_pred cccCCCCchhhhHHHHHHH
Confidence 1 3467777765
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. |
| >cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-12 Score=116.41 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=78.5
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECch--HHHHhhcCCC-Ccc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATD--QFLSKLKGVI-DPE 302 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~--~f~~~l~~~~-~p~ 302 (531)
.++|++|||+||+++++++++..+.++.++++|+|+.++.+.+.+.+ +|+. |+++..+.++. ........+. +..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~~~~~~~~~~~-~a~~-g~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKN-LIKK-GLDLDHLVINPEEMKDLQLARFKAKVG 80 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHH-HHHh-CCCeEEEecCHHHHHHHHHHHHhcccC
Confidence 48999999999999999999885568999999999976666667665 8898 77765555442 2111111110 112
Q ss_pred cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 303 TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 303 ~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
..+..+...++..+.+.|++.| ++.+++|++.++..
T Consensus 81 ~p~~~~~~~~~~~~~~~A~~~g------~~~il~G~~~de~~ 116 (154)
T cd01996 81 DPCWPCDTAIFTSLYKVALKFG------IPLIITGENPAQEF 116 (154)
T ss_pred CCChhhhHHHHHHHHHHHHHhC------cCEEEeCcCHHHhc
Confidence 2233444556678888898887 89999999988764
|
Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus. |
| >PLN02339 NAD+ synthase (glutamine-hydrolysing) | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.9e-12 Score=139.07 Aligned_cols=199 Identities=21% Similarity=0.219 Sum_probs=127.1
Q ss_pred hhhhhhhhccccC--ccceeeccCCCCCHHHHHHHH-------HHHh--CC-c---------------------------
Q 039743 211 DEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLV-------HKAI--GD-R--------------------------- 251 (531)
Q Consensus 211 ~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~-------~k~~--g~-~--------------------------- 251 (531)
....-.|++++.+ .+++++++|||+||+++|+++ .+++ |. +
T Consensus 333 ~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (700)
T PLN02339 333 LGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRI 412 (700)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcce
Confidence 3344556666543 468999999999999988885 6777 42 1
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECch---HHHHhhcCCC--Cc----------c--cccchhhHHHHH
Q 039743 252 LHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATD---QFLSKLKGVI--DP----------E--TKRKIIGKEFIC 314 (531)
Q Consensus 252 v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~---~f~~~l~~~~--~p----------~--~kr~~~~~~~~~ 314 (531)
++++++++-..++...++|.+ +|+.+|++++.+++++ .+.+.++... +| + ....+-.+.+..
T Consensus 413 ~~~v~mp~~~ss~~t~~~A~~-la~~lG~~~~~i~I~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~d~~~~NiQAR~R~~ 491 (700)
T PLN02339 413 FYTVYMGSENSSEETRSRAKQ-LADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNAENLALQNIQARIRMV 491 (700)
T ss_pred eEEEECCCCCCCHHHHHHHHH-HHHHHCCCEEEEeCHHHHHHHHHHhhhhcCCCccccccCCCcccchhhhcccHHHHHH
Confidence 689999876666666666665 9999999999999994 3433332210 11 1 111223333444
Q ss_pred HHHHHHHHhhhhcCCCCc-EEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHH-
Q 039743 315 IFDAFAHDLEQKLGKKPA-YLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQL- 392 (531)
Q Consensus 315 ~~~~~a~~~g~~~~~~~~-~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~l- 392 (531)
+++.+|...+.. .+... .|+.||.. ..| ...|+ .|.+++++- .+.|+.+++|.+||++
T Consensus 492 ~l~~~A~l~~~~-~~~~g~~LvlgTgN--~sE--~~~Gy--------~T~ygd~~~-------~~~pi~~l~Kt~v~~l~ 551 (700)
T PLN02339 492 LAFMLASLLPWV-RGKSGFLLVLGSAN--VDE--GLRGY--------LTKYDCSSA-------DINPIGGISKQDLRSFL 551 (700)
T ss_pred HHHHHHhhcchh-hccCCceEEEcCCC--cch--hheee--------eeecCCCCc-------CccccCCCcHHHHHHHH
Confidence 556666544311 12233 48888843 334 22454 566666554 7899999999999999
Q ss_pred ---HHHcCCC--ccccccCCCCCCCccccc----cCCCCcchHHHHHhhhh
Q 039743 393 ---GRILNVP--EQFLKRHPFPGPGLAVRV----LGDVTEGNSLDILRQVD 434 (531)
Q Consensus 393 ---a~~lglp--~~~~~~~P~~~p~la~r~----~g~vt~~~l~~~~~~~d 434 (531)
++.++.| .+++.+.|+|+ | +. .++.|++.+|-.+++.+
T Consensus 552 ~~~~~~~~~~il~~i~~~~pSaE--L--~p~~~~~~Q~dE~~lG~~Y~~l~ 598 (700)
T PLN02339 552 RWAATNLGYPSLAEVEAAPPTAE--L--EPIRDDYSQTDEEDMGMTYEELG 598 (700)
T ss_pred HHHHHhcCCCcHHHHhcCCCCcc--c--ccCCCCCCCCCHHHHCcCHHHHH
Confidence 6667777 78888877765 3 33 25667776643455443
|
|
| >PRK05370 argininosuccinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=127.53 Aligned_cols=165 Identities=12% Similarity=0.059 Sum_probs=115.3
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHhh----
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSKL---- 295 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~l---- 295 (531)
+...+||++|+|||.||+|++.++++- |.+|+|+++|.|+...++.+.+.+ -|..+|. +++++|+.+.|.+..
T Consensus 8 l~~~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~-kA~~~GA~~~~viDlr~eF~e~~i~aI 85 (447)
T PRK05370 8 LPVGQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPR-RAMEYGAENARLIDCRAQLVAEGIAAI 85 (447)
T ss_pred CCCCCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHH-HHHHhCCCEEEEeccHHHHHHHHHHHH
Confidence 333789999999999999999999987 999999999999743345556555 4678898 799999998876442
Q ss_pred cCCCC---cccccch----hhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccC
Q 039743 296 KGVID---PETKRKI----IGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVG 367 (531)
Q Consensus 296 ~~~~~---p~~kr~~----~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~ 367 (531)
..-.- .++.++. +.+.+ .+.+.++|++.| ++.+++|.. |.| ++.++......
T Consensus 86 ~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~g------a~aIAHG~T-----------GKG---NDQvRFE~~~~ 145 (447)
T PRK05370 86 QCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDG------VNIWGDGST-----------YKG---NDIERFYRYGL 145 (447)
T ss_pred HcCCccccccCccccCCCcchHHHHHHHHHHHHHHhC------CcEEEEcCC-----------CCC---CchHHHHHHHH
Confidence 21110 0011222 22332 245677788888 899999973 333 45555433332
Q ss_pred CCCcccccceeccccc--C-----CHHHHHHHHHHcCCCccccccCCCC
Q 039743 368 GLPKDMKLKLIEPLKL--L-----FKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 368 ~l~~~~~~~ii~PL~~--l-----~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.+.+ .++++.|+++ + +++|-.+|+++.|+|.......|++
T Consensus 146 aL~P--~l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~~~~~~~yS 192 (447)
T PRK05370 146 LTNP--ELKIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYKMSVEKAYS 192 (447)
T ss_pred HhCC--CCeEecchhhhhcccccCCHHHHHHHHHHcCCCCCccCCCCcc
Confidence 3322 5679999999 4 7999999999999997555555665
|
|
| >KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-12 Score=122.22 Aligned_cols=168 Identities=18% Similarity=0.179 Sum_probs=106.3
Q ss_pred CCCCc-HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC-----CCcE
Q 039743 13 YGSQY-THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN-----GVYV 84 (531)
Q Consensus 13 ~G~~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~-----~iPv 84 (531)
+|..| ..++++.++..|+++..+.++.+.+.+. +.-.+|||++||-.- ..+.....+.+++..+++ ..||
T Consensus 73 t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak--~~dY~~vvkkifnk~le~nDaGehFPv 150 (340)
T KOG1559|consen 73 TGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAK--RGDYFEVVKKIFNKVLERNDAGEHFPV 150 (340)
T ss_pred cCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccc--cccHHHHHHHHHHHHHhccCCccccch
Confidence 44444 5678999999999999988888766542 556899999999431 111223345677776663 3899
Q ss_pred EEeeHHHHHHHHHcC-C-EE-eecCcccceeeeEEEec----CCccccCCCCC------ceEEEEeeccCccc-------
Q 039743 85 LGICYGLQLMVQKLD-G-VV-KVGEKQEYGRMEILVER----SSGIFGNKKVG------HHQVVWMSHGDEAV------- 144 (531)
Q Consensus 85 LGIC~G~Qlla~~~G-G-~v-~~~~~~e~G~~~v~~~~----~~~l~~~~~~~------~~~~v~~~H~~~v~------- 144 (531)
.|||+|+.+|..... + .+ ++.+.. .-...++... .+.+|+.+|.+ ..--+...|.+.+.
T Consensus 151 yg~CLGFE~lsmiISqnrdile~~d~v-d~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N 229 (340)
T KOG1559|consen 151 YGICLGFELLSMIISQNRDILERFDAV-DVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGN 229 (340)
T ss_pred hhhhhhHHHHHHHHhcChhHHHhhccc-ccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCC
Confidence 999999999987543 1 11 111111 1112222222 23455555432 00346778988763
Q ss_pred -cCCCCcEEEEEeCCC----cEEEEEECCCcEEEEecCCCCCCC
Q 039743 145 -VLPDGFEVVARSQQG----AVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 145 -~lp~g~~vla~s~~~----~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
.|..-|.++.++.|+ .|..++....|++|+|||||....
T Consensus 230 ~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKnaf 273 (340)
T KOG1559|consen 230 PALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNAF 273 (340)
T ss_pred HHHHHHHhheeeecCCCceEEEEeecceeccceeeeecCccCcc
Confidence 233456777766444 577788788999999999997653
|
|
| >COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.5e-11 Score=118.83 Aligned_cols=161 Identities=20% Similarity=0.296 Sum_probs=115.9
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECchHHHHhh-----cC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDATDQFLSKL-----KG 297 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~~~f~~~l-----~~ 297 (531)
.+||++|+|||.|.||+..++.+..|.+|+++++|-|+- .+|.+.+.+ =|..+|.. +.++|+.+.|.... .+
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~-eed~~~i~e-KA~~~Ga~~~~viD~reeF~~~yi~~~i~a 81 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP-EEDLDAIRE-KALELGAEEAYVIDAREEFVEDYIFPAIKA 81 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCC-hHHhHHHHH-HHHHhCCceEEEeecHHHHHHHHHHHHHHh
Confidence 579999999999999999999999779999999999986 566666665 46778875 99999999886442 11
Q ss_pred CCCcccccchhh----HHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcc
Q 039743 298 VIDPETKRKIIG----KEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKD 372 (531)
Q Consensus 298 ~~~p~~kr~~~~----~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~ 372 (531)
-..-+ ..+..+ ++. .+.+-++|++.| ++.++.|.. |.| +|+++.-.....+ .
T Consensus 82 na~Ye-g~YpL~TalaRPLIak~lVe~A~k~g------a~avaHGcT-----------GKG---NDQvRFe~~~~al--~ 138 (403)
T COG0137 82 NALYE-GVYPLGTALARPLIAKKLVEAAKKEG------ADAVAHGCT-----------GKG---NDQVRFELAILAL--N 138 (403)
T ss_pred hceee-ccccccchhhHHHHHHHHHHHHHHcC------CCEEEecCC-----------CCC---Cceeeeeeehhhh--C
Confidence 11111 112222 222 235567788887 899998873 443 4555543222222 2
Q ss_pred cccceeccccc--CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 373 MKLKLIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 373 ~~~~ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
-.++++.|.++ +.++|..+||++.|+|...-.+.||+
T Consensus 139 p~lkiiAP~Rew~~~R~~~i~Ya~~~gipv~~~~~kpyS 177 (403)
T COG0137 139 PDLKIIAPWREWNLTREEEIEYAEEHGIPVKATKEKPYS 177 (403)
T ss_pred CCcEEEeehhhhccChHHHHHHHHHcCCCccccCCCCcc
Confidence 36789999998 88999999999999998766667776
|
|
| >PRK02090 phosphoadenosine phosphosulfate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=119.66 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=106.1
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh--c-CCCC-
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL--K-GVID- 300 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l--~-~~~~- 300 (531)
++++|++|||+||+|+++|+++. +.++.++|+|+|...++..+.+ +.+++++|++++++.....+.... . +...
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~-~~~i~vvfiDTG~~~pet~e~~-~~~~~~~gl~l~v~~~~~~~~~~~~~~~~~~~~ 118 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQV-DPDIPVIFLDTGYLFPETYRFI-DELTERLLLNLKVYRPDASAAEQEARYGGLWEQ 118 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc-CCCCcEEEecCCCCCHHHHHHH-HHHHHHhCCCEEEECCCccHHHHHHHcCCCccc
Confidence 56999999999999999999996 7889999999999766555444 458999999999998875432221 1 2111
Q ss_pred cccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 301 PETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 301 p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
+-...+.||..+ ..-+.+.+++.+ . +++|+..++-..+.. ...+.. .....-+.
T Consensus 119 ~~~~~~~cc~~~K~~pl~~~~~~~~------~--~itG~R~~es~~R~~--------~~~~~~---------~~~~~rv~ 173 (241)
T PRK02090 119 SVEDRDECCRIRKVEPLNRALAGLD------A--WITGLRREQSGTRAN--------LPVLEI---------DGGRFKIN 173 (241)
T ss_pred cccCHHHHHHHHhhHHHHHHHhcCC------C--eEEEechhhCchhcc--------Cceeee---------cCCeEEEe
Confidence 002233455443 345566666544 3 789997665221100 001110 01334789
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
||.+++..||.+|.+..|||..-++..-|+
T Consensus 174 Pi~~Wt~~dV~~Yi~~~~lp~~pLY~~Gy~ 203 (241)
T PRK02090 174 PLADWTNEDVWAYLKEHDLPYHPLVDQGYP 203 (241)
T ss_pred ehhhCCHHHHHHHHHHcCCCCChHHHcCCC
Confidence 999999999999999999997656665444
|
|
| >TIGR03573 WbuX N-acetyl sugar amidotransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-11 Score=124.93 Aligned_cols=133 Identities=22% Similarity=0.224 Sum_probs=95.9
Q ss_pred ccccccc-chhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCC
Q 039743 201 NAGWKLE-NVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLH 279 (531)
Q Consensus 201 ~~~w~~~-~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lg 279 (531)
+.+|... .-++++++.+|+.-+..-.++||+|||+||+++|+++++.+|.+++++|+++|+.++.+.+.+.+ +++++|
T Consensus 35 ~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~-~~~~lg 113 (343)
T TIGR03573 35 KIDWDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNN-LIKKLG 113 (343)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHH-HHHHcC
Confidence 3467543 23455666666542211359999999999999999997778999999999999987767677766 889999
Q ss_pred CcEEEEECchHH-----HHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCc
Q 039743 280 LPVTCVDATDQF-----LSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDV 343 (531)
Q Consensus 280 i~~~vvd~~~~f-----~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~ 343 (531)
++++++..+... ...+....+| +..+...++..+.+.|++.| ..++++|++.+.+
T Consensus 114 vd~~~i~~d~~~~~~l~~~~~~~~~~p---c~~c~~~~~~~l~~~A~~~g------i~~Il~G~~~dE~ 173 (343)
T TIGR03573 114 FDLHTITINPETFRKLQRAYFKKVGDP---EWPQDHAIFASVYQVALKFN------IPLIIWGENIAEE 173 (343)
T ss_pred CCeEEEeCCHHHHHHHHHHHHhccCCC---chhhhhHHHHHHHHHHHHhC------CCEEEeCCCHHHh
Confidence 999999886332 2223333334 33444456677888899888 8999999987743
|
This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an |
| >TIGR02039 CysD sulfate adenylyltransferase, small subunit | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-11 Score=118.71 Aligned_cols=173 Identities=15% Similarity=0.079 Sum_probs=113.0
Q ss_pred hhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC---CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECc
Q 039743 212 EEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG---DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDAT 288 (531)
Q Consensus 212 ~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g---~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~ 288 (531)
+.+..||+.+...++.++++|||+||+|+++|+.+++. ..+.++|+|+|..-++ ..+..+.+|+.+|+++++....
T Consensus 7 esi~ilRe~~~~f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~E-t~efrd~~a~~~gl~l~v~~~~ 85 (294)
T TIGR02039 7 EAIHIIREVAAEFERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFRE-MIAFRDHMVAKYGLRLIVHSNE 85 (294)
T ss_pred HHHHHHHHHHHhcCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHH-HHHHHHHHHHHhCCCEEEEech
Confidence 44455666555445678899999999999999999963 5789999999997554 4455555899999999999876
Q ss_pred hHHHHhhcCCCCcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccccc-cc
Q 039743 289 DQFLSKLKGVIDPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHH-NV 366 (531)
Q Consensus 289 ~~f~~~l~~~~~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~-~~ 366 (531)
+.+.. +..........||..+ ...+.+.+++.+ .+.+++|+..+|-..+.. ..|.++. +.
T Consensus 86 ~~~~~---g~~~~~~~~~~~c~vlK~~pL~~al~e~g------~da~itG~RRDEe~sRak---------e~i~s~r~~~ 147 (294)
T TIGR02039 86 EGIAD---GINPFTEGSALHTDIMKTEALRQALDKNQ------FDAAFGGARRDEEKSRAK---------ERIFSFRNAF 147 (294)
T ss_pred hhhhc---CccccccChHHHhhHHHHHHHHHHHHHcC------CCEEEecCChhhhhHhhc---------Cceeeccccc
Confidence 54321 2211111112244443 346666666666 899999999888654321 0111110 00
Q ss_pred -----------------CCCCcccccceecccccCCHHHHHHHHHHcCCCccccc
Q 039743 367 -----------------GGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLK 404 (531)
Q Consensus 367 -----------------~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~ 404 (531)
+.+.+. ..--+.||.+++..||..|....|||..-++
T Consensus 148 ~~wD~~~q~Pelw~~~~~~~~~g-~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY 201 (294)
T TIGR02039 148 HQWDPKKQRPELWNLYNGRISKG-ESVRVFPLSNWTELDIWRYIAAENIPIVPLY 201 (294)
T ss_pred cccCccccCchhhhccccccccC-CcEEEechhhCCHHHHHHHHHHcCCCCCcCe
Confidence 001111 1224579999999999999999999964444
|
In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. |
| >KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-11 Score=122.87 Aligned_cols=133 Identities=22% Similarity=0.279 Sum_probs=79.8
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeec--------------------C
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVG--------------------E 106 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~--------------------~ 106 (531)
...|||++|||.++.--+. .....++|+++++|+||||+|||+.+..|--+|... +
T Consensus 362 ~~adGilvPGGFG~RGveG----~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MP 437 (585)
T KOG2387|consen 362 KSADGILVPGGFGDRGVEG----KILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMP 437 (585)
T ss_pred ccCCeEEeCCcccccchhH----HHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECc
Confidence 3479999999998532221 235568999999999999999999887653222211 0
Q ss_pred ---------cccceeeeEEEec-CCccccCCCCCceEEEEeeccCccc-----cC-CCCcEEEEEeCCC-cEEEEEECCC
Q 039743 107 ---------KQEYGRMEILVER-SSGIFGNKKVGHHQVVWMSHGDEAV-----VL-PDGFEVVARSQQG-AVAAVENREK 169 (531)
Q Consensus 107 ---------~~e~G~~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~~v~-----~l-p~g~~vla~s~~~-~v~ai~~~~~ 169 (531)
....|..+..+.. ++.+-+-+.+.....--+-|.+.|. .+ -.|+..++.+.++ .++.++.+++
T Consensus 438 E~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~H 517 (585)
T KOG2387|consen 438 EHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESH 517 (585)
T ss_pred CCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCC
Confidence 0111222211221 1211111121111223345666652 11 2489999998766 6788888888
Q ss_pred cE-EEEecCCCCCCC
Q 039743 170 RL-FGLQYHPEVTHS 183 (531)
Q Consensus 170 ~i-~gvQFHPE~~~~ 183 (531)
|+ .|+|||||+..-
T Consensus 518 P~fVg~QfHPE~~sr 532 (585)
T KOG2387|consen 518 PFFVGVQFHPEFKSR 532 (585)
T ss_pred CceeeeccCHHHhcC
Confidence 86 599999998753
|
|
| >PLN03206 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.6e-10 Score=132.18 Aligned_cols=177 Identities=21% Similarity=0.295 Sum_probs=114.3
Q ss_pred CCEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChhc-cccCCCCEEEEcCCCCC--CCCCCCC---------CChH
Q 039743 5 PELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPHS--VHSPDAP---------AFPA 71 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~-~~~~~~dgiIlsGGp~s--~~~~~~~---------~~~~ 71 (531)
.++|+|+-| |+......+++++.+|+.++.+..+.-.+. ..+.+++||+++||.+. ..+...- .+..
T Consensus 1037 ~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~ 1116 (1307)
T PLN03206 1037 KPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQ 1116 (1307)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHH
Confidence 368999977 666677899999999999888776532221 12578999999999972 2221111 1112
Q ss_pred HHHHHHHhCCCcEEEeeHHHHHHHHH--cCCE----------------EeecCcc--cceeeeEEEec-CCccccCCCCC
Q 039743 72 GFLEWALSNGVYVLGICYGLQLMVQK--LDGV----------------VKVGEKQ--EYGRMEILVER-SSGIFGNKKVG 130 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC~G~Qlla~~--~GG~----------------v~~~~~~--e~G~~~v~~~~-~~~l~~~~~~~ 130 (531)
++.+.+.+.+.++||||.|||+|.+. ++|. ..++... +--|..+++.. .+++++++...
T Consensus 1117 ~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~~~~~~~~~~~e~~p~l~~N~s~rfesr~v~v~V~~s~si~l~~~~G~ 1196 (1307)
T PLN03206 1117 QFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIEDSPAIMLKGMEGS 1196 (1307)
T ss_pred HHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCccccccccccccCCceeeecCCCCeEEeceEEEECCCCChhhcccCCC
Confidence 33333335699999999999999985 2221 2222222 33455566643 46788888643
Q ss_pred ceEEEEeeccCccccCCC----------CcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCC
Q 039743 131 HHQVVWMSHGDEAVVLPD----------GFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 131 ~~~~v~~~H~~~v~~lp~----------g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
.+.+|..|++.-...++ |...+-. ++++ .|+++.+++++++|++.|||+..
T Consensus 1197 -~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~yP~NPNGS~~~IAGi~s~dGRvlgmMpHPER~~ 1273 (1307)
T PLN03206 1197 -TLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDGRHLAMMPHPERCF 1273 (1307)
T ss_pred -EEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCCCCCCCCCChhhceeeECCCCCEEEEcCCHHHhh
Confidence 58999999975422221 2222211 2333 48999999999999999999863
|
|
| >PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6 | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-11 Score=124.01 Aligned_cols=157 Identities=21% Similarity=0.301 Sum_probs=95.5
Q ss_pred eeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHh-----hcCCCCc
Q 039743 228 ICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSK-----LKGVIDP 301 (531)
Q Consensus 228 vvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~-----l~~~~~p 301 (531)
++|+|||.||++++.++++..+.+|+|+++|.|+. .++.+.+.+ -|.++|. +++++|.++.|.+. ++.-..-
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~-~~d~~~i~~-kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Y 78 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQP-DEDLEAIEE-KALKLGASKHIVVDARDEFAEDYIFPAIKANALY 78 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST--S-HHHHHH-HHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--B
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCc-HHHHHHHHH-HHHhcCCceeeecchHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999998458999999999994 456666665 5778897 99999999988643 2211111
Q ss_pred ccccch----hhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccc
Q 039743 302 ETKRKI----IGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLK 376 (531)
Q Consensus 302 ~~kr~~----~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ 376 (531)
+ .++. +.+. ..+...++|++.| ++.+++|.+ |.| ++.++..-....+. -+++
T Consensus 79 e-g~YpL~tsl~RplIa~~~v~~A~~~g------a~~vaHG~T-----------gkG---NDqvRFe~~~~al~--P~l~ 135 (388)
T PF00764_consen 79 E-GRYPLSTSLARPLIAKKLVEVAREEG------ADAVAHGCT-----------GKG---NDQVRFELSIRALA--PELK 135 (388)
T ss_dssp T-TTB--CCCCHHHHHHHHHHHHHHHHT-------SEEE---------------TTS---SHHHHHHHHHHHHS--TTSE
T ss_pred C-CCccccccchHHHHHHHHHHHHHHcC------CeEEeccCC-----------cCC---CchhHHHHHHHHhC--cCCc
Confidence 1 1122 2222 2345667888888 899999873 333 44444432221121 1568
Q ss_pred eeccccc--CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 377 LIEPLKL--LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 377 ii~PL~~--l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
++.|+++ ++++|-.+++++.|||.....+.|++
T Consensus 136 viaP~Rd~~~~R~~~i~ya~~~gIpv~~~~~~~yS 170 (388)
T PF00764_consen 136 VIAPWRDWEFSREEEIEYAKKHGIPVPVTKKKPYS 170 (388)
T ss_dssp EE-GGGHHHHHHHHHHHHHHHTT----SS---SSE
T ss_pred EecccchhhhhHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 9999999 88999999999999997655556665
|
3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C .... |
| >TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=134.68 Aligned_cols=176 Identities=16% Similarity=0.237 Sum_probs=115.0
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChh-ccccCCCCEEEEcCCCCC--CCCCCC---------CCChHH
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLD-DITAKNPRVVILSGGPHS--VHSPDA---------PAFPAG 72 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~-~~~~~~~dgiIlsGGp~s--~~~~~~---------~~~~~~ 72 (531)
++|+|+-| |++.....+++++.+|+.++.+..+.-.. ...+.+++||+++||.+. +..... +.+..+
T Consensus 1056 p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~ 1135 (1310)
T TIGR01735 1056 PKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQ 1135 (1310)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHH
Confidence 68999977 56667779999999999988887654221 223577899999999872 111111 111123
Q ss_pred HHHHHHhCCCcEEEeeHHHHHHHHH---cCCE-----EeecCcccc--eeeeEEEec-CCccccCCCCCceEEEEeeccC
Q 039743 73 FLEWALSNGVYVLGICYGLQLMVQK---LDGV-----VKVGEKQEY--GRMEILVER-SSGIFGNKKVGHHQVVWMSHGD 141 (531)
Q Consensus 73 l~~~~~~~~iPvLGIC~G~Qlla~~---~GG~-----v~~~~~~e~--G~~~v~~~~-~~~l~~~~~~~~~~~v~~~H~~ 141 (531)
+.+.+.+.+.++||||.|+|+|... ++|. ..++....| -|..+++.. .+++++++... .+.+|..|++
T Consensus 1136 ~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~~~~v~~s~s~~~~~~~g~-~l~~~vaHgE 1214 (1310)
T TIGR01735 1136 FQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGESPSIMLRGMAGS-RLPVAVAHGE 1214 (1310)
T ss_pred HHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeeeEEEECCCCChhhhhcCCC-EEEEEeEcCC
Confidence 3334436799999999999999943 3443 444433333 455666653 56888888643 5899999987
Q ss_pred ccccCC----------CCcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCC
Q 039743 142 EAVVLP----------DGFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 142 ~v~~lp----------~g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
.-...+ .+...+-. ++++ .|+++.+++++++|++.|||+..
T Consensus 1215 Gr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGrvl~~MpHPEr~~ 1281 (1310)
T TIGR01735 1215 GYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGRVTIMMPHPERVF 1281 (1310)
T ss_pred CCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCCCChhcceEeECCCCCEEEEcCCHHHhh
Confidence 432111 12222211 2333 48999999999999999999863
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. |
| >TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=112.05 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=104.9
Q ss_pred eeccCCCCCHHHHHHHHHHHhCCcEEEE-EEeCC-----CCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCc
Q 039743 228 ICALSGGVDSTVAATLVHKAIGDRLHCV-FVDNG-----LLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDP 301 (531)
Q Consensus 228 vvalSGGvDS~v~a~l~~k~~g~~v~~v-~id~g-----~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p 301 (531)
++++|||+||+++++++++. |.+++++ ++.+. ..+..+.+.+.+ +|+.+|+|+++++++. .. +
T Consensus 1 ~vl~SGGkDS~~al~~a~~~-G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~-~A~~lgip~~~i~~~~--------~~-~ 69 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEE-GHEVRCLITVVPENEESYMFHTPNIELTRL-QAEALGIPLVKIETSG--------EK-E 69 (218)
T ss_pred CeeecCcHHHHHHHHHHHHc-CCEEEEEEEeccCCCCccccCCCCHHHHHH-HHHHhCCCEEEEECCC--------CC-h
Confidence 47999999999999999986 9898754 65532 223346666554 8999999999999862 00 1
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceeccc
Q 039743 302 ETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPL 381 (531)
Q Consensus 302 ~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL 381 (531)
.. . ..++..+.+.+++ | .+.++.|++.+|.... .+. .+....+++++.||
T Consensus 70 ~~----~-~~l~~~l~~~~~~-g------~~~vv~G~i~sd~~~~------------~~e------~v~~~~gl~~~~PL 119 (218)
T TIGR03679 70 KE----V-EDLKGALKELKRE-G------VEGIVTGAIASRYQKS------------RIE------RICEELGLKVFAPL 119 (218)
T ss_pred HH----H-HHHHHHHHHHHHc-C------CCEEEECCcccHhHHH------------HHH------HHHHhCCCeEEeeh
Confidence 00 0 1144444444433 5 8999999998864321 011 12233466899999
Q ss_pred ccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCC-CCcchHHHHHh
Q 039743 382 KLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD-VTEGNSLDILR 431 (531)
Q Consensus 382 ~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~-vt~~~l~~~~~ 431 (531)
-.++|.|+-+.+..+|+..-++.-.+ .||.-.++|. +|++-+ +.+.
T Consensus 120 w~~~~~el~~~~~~~G~~~~i~~v~~---~~l~~~~lG~~~~~~~~-~~l~ 166 (218)
T TIGR03679 120 WGRDQEEYLRELVERGFRFIIVSVSA---YGLDESWLGREIDEKYI-EKLK 166 (218)
T ss_pred hcCCHHHHHHHHHHCCCEEEEEEEec---CCCChHHCCCccCHHHH-HHHH
Confidence 99999999999999999754433322 3576677765 455555 4433
|
This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes. |
| >PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: |
Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-11 Score=117.55 Aligned_cols=185 Identities=18% Similarity=0.148 Sum_probs=116.6
Q ss_pred EEEEEeCCCCc---HHHHHHHHHHCCCEEEEEeC--------CC----------ChhccccCCCCEEEEcCCCCC--CCC
Q 039743 7 LVLILDYGSQY---THLITRRIRSLSILSLCLSG--------TC----------SLDDITAKNPRVVILSGGPHS--VHS 63 (531)
Q Consensus 7 ~I~IlD~G~~~---~~~i~r~l~~~G~~~~v~~~--------~~----------~~~~~~~~~~dgiIlsGGp~s--~~~ 63 (531)
+|+||+.=..- ...+.|.|.+....+++... +. +++++....+||+|++|-|-- .++
T Consensus 36 ~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l~Fe 115 (298)
T PF04204_consen 36 KIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQLPFE 115 (298)
T ss_dssp EEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS-GG
T ss_pred EEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCCCcc
Confidence 79999763322 22355555555555555221 11 133444668999999999873 233
Q ss_pred CCCCCCh-HHHHHHHHhCCCcEEEeeHHHHH-HHHHcCCEEeecCcccceeeeEEEe-cCCccccCCCCCceEEEEeecc
Q 039743 64 PDAPAFP-AGFLEWALSNGVYVLGICYGLQL-MVQKLDGVVKVGEKQEYGRMEILVE-RSSGIFGNKKVGHHQVVWMSHG 140 (531)
Q Consensus 64 ~~~~~~~-~~l~~~~~~~~iPvLGIC~G~Ql-la~~~GG~v~~~~~~e~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H~ 140 (531)
+...|-+ .++++++.++..+.|.||+|+|. |....|-.-...+..-+|....++. +.+||++|+++. +.+.+|..
T Consensus 116 ~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~~~~~~~~~pLl~Gfdd~--f~~PhSR~ 193 (298)
T PF04204_consen 116 EVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFEHRVLDPDHPLLRGFDDT--FFAPHSRY 193 (298)
T ss_dssp GSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEEEEES-SS-GGGTT--SE--EEEEEEEE
T ss_pred cCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcceeceeeeccCCCChhhcCCCcc--ccCCcccc
Confidence 4334433 47999999999999999999999 7778888888888888999988865 567999999987 88877665
Q ss_pred Cccc--cC--CCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhh
Q 039743 141 DEAV--VL--PDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYF 193 (531)
Q Consensus 141 ~~v~--~l--p~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F 193 (531)
-.+. ++ .++++++|.++...+..+..++++.+-+|.|||.+.+....+..|..
T Consensus 194 t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r~vfi~GH~EYd~~TL~~EY~RD~ 250 (298)
T PF04204_consen 194 TEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGRQVFITGHPEYDADTLAKEYRRDL 250 (298)
T ss_dssp EE--HHHHCT-TTEEEEEEETTTEEEEEEECCCTEEEE-S-TT--TTHHHHHHHHHH
T ss_pred cCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCCEEEEeCCCccChhHHHHHHHHHH
Confidence 4442 23 67899999999888888888888999999999999865555554443
|
Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A. |
| >PRK05297 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7e-10 Score=131.04 Aligned_cols=174 Identities=17% Similarity=0.242 Sum_probs=114.7
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCCh-hccccCCCCEEEEcCCCCCCCCCC--C-----------CCCh
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSL-DDITAKNPRVVILSGGPHSVHSPD--A-----------PAFP 70 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~-~~~~~~~~dgiIlsGGp~s~~~~~--~-----------~~~~ 70 (531)
+||+|+-| |+......+++++.+|+.++++..+.-. ....+.++++|+++||.+. .+. + +.+.
T Consensus 1036 pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~--gD~lgsg~~~a~~~~~n~~~~ 1113 (1290)
T PRK05297 1036 PKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSY--GDVLGAGEGWAKSILFNPRLR 1113 (1290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCC--cccchHHHHHHHHhhccHHHH
Confidence 68999977 6666778999999999998877764311 1112578999999999873 221 1 0111
Q ss_pred HHHHHHHHhCCCcEEEeeHHHHHHHHH--c-CC-----EEeecCccc--ceeeeEEEe-cCCccccCCCCCceEEEEeec
Q 039743 71 AGFLEWALSNGVYVLGICYGLQLMVQK--L-DG-----VVKVGEKQE--YGRMEILVE-RSSGIFGNKKVGHHQVVWMSH 139 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGIC~G~Qlla~~--~-GG-----~v~~~~~~e--~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H 139 (531)
.++-+.+.+.+.++||||.|||+|.+. + .+ ++.++.... --|..+++. ..+++++++.. ..+.+|..|
T Consensus 1114 ~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~~~~~p~l~~N~s~rfesr~~~~~v~~~~s~~~~~~~g-~~l~~~vaH 1192 (1290)
T PRK05297 1114 DQFEAFFARPDTFALGVCNGCQMMSNLKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQESPSIFLQGMAG-SRLPIAVAH 1192 (1290)
T ss_pred HHHHHHHhCCCceEEEEcHHHHHHHHhCCccCCCCCCCeEeecCCCCeEEeeeEEEECCCCChhHhhcCC-CEEEEEEEc
Confidence 223333446799999999999999996 1 12 234443333 345556664 35688888863 358999999
Q ss_pred cCccccCCC---------CcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCC
Q 039743 140 GDEAVVLPD---------GFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 140 ~~~v~~lp~---------g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
++.-...++ |...+-. ++++ .|+++.+++++++|++.|||+..
T Consensus 1193 geGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGrvlglMpHPEr~~ 1260 (1290)
T PRK05297 1193 GEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNGSPNGITGLTTADGRVTIMMPHPERVF 1260 (1290)
T ss_pred CcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCCCChhcceEeECCCCCEEEEcCChHHhc
Confidence 865432221 2222111 3444 48999999999999999999864
|
|
| >PRK13794 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.9e-10 Score=119.73 Aligned_cols=184 Identities=20% Similarity=0.154 Sum_probs=120.2
Q ss_pred ccchhhhhhhhhhccccC-ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 206 LENVLDEEVKCIKDTVGL-EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 206 ~~~~~~~~~~~i~~~v~~-~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
++.+..+.++.|++.... .++++|++|||+||+|+++++.++++.++.++|+|+|+..++..+.+. .+++++|+++++
T Consensus 228 l~~~~~~a~~~i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~-~~~~~~gl~i~~ 306 (479)
T PRK13794 228 LDKYERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVE-DVEKHYGLEIIR 306 (479)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHH-HHHHhcCCcEEE
Confidence 344455566667765532 358999999999999999999999888899999999997665554444 489999999999
Q ss_pred EECchHHHHhhcCCCCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 285 VDATDQFLSKLKGVIDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 285 vd~~~~f~~~l~~~~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
+..+ .|...+.....|....+.||..+. +=+.+..++.. .+....++|.-.++-..+.. ...+.
T Consensus 307 ~~~~-~f~~~~~~~G~P~~~~rwCc~~~K~~Pl~~~l~~~~----~~~~~~~~G~R~~ES~~Ra~--------~~~~~-- 371 (479)
T PRK13794 307 TKSE-EFWEKLEEYGPPARDNRWCSEVCKLEPLGKLIDEKY----EGECLSFVGQRKYESFNRSK--------KPRIW-- 371 (479)
T ss_pred EchH-HHHHHHHhcCCCCCcchhhhhHHHHHHHHHHHHhcC----CCccEEEEEEEcCccHhHhc--------Ccccc--
Confidence 8776 566655444335444456665432 22233333210 11456788875544222110 00000
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
..... .+.-.+.||.+++..||..|....++|..-++++-|+
T Consensus 372 -~~~~~---~~~~~~~PI~~Wt~~dVw~Yi~~~~lp~npLY~~G~~ 413 (479)
T PRK13794 372 -RNPYI---KKQILAAPILHWTAMHVWIYLFREKAPYNKLYEQGFD 413 (479)
T ss_pred -cccCc---CCcEEEechHhCCHHHHHHHHHHcCCCCChHHHCCCC
Confidence 01111 1223679999999999999999999998777777666
|
|
| >PRK13795 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=121.06 Aligned_cols=184 Identities=18% Similarity=0.127 Sum_probs=123.3
Q ss_pred ccchhhhhhhhhhccccC-ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 206 LENVLDEEVKCIKDTVGL-EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 206 ~~~~~~~~~~~i~~~v~~-~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
++.+.++.++.|++.+.. .++++|++|||+||+|+++|+.+++ .++.++|+|+|+..++..+.+.+ +++.+|+++++
T Consensus 224 l~~~~~~ai~~Ir~~~~~~~~~v~Va~SGGKDS~vll~L~~~a~-~~~~vvfiDTg~efpet~e~v~~-~~~~~gi~i~~ 301 (636)
T PRK13795 224 LEEKEKEAVNFIRGVAEKYNLPVSVSFSGGKDSLVVLDLAREAL-KDFKAFFNNTGLEFPETVENVKE-VAEEYGIELIE 301 (636)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHhC-CCcEEEEEeCCCCCHHHHHHHHH-HHHHcCCcEEE
Confidence 555666777777776542 3589999999999999999999984 45889999999987665555554 88999999999
Q ss_pred EECchHHHHhhcCCCCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 285 VDATDQFLSKLKGVIDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 285 vd~~~~f~~~l~~~~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
++..+.|...+.....|....+.||+.+. .-+.+..++.. . .....++|.-.++-..+.. ...+...
T Consensus 302 ~~~~~~f~~~~~~~g~P~~~~rwCc~~~K~~Pl~r~l~~~~---~-~~~~~i~G~Rr~ES~~R~~--------~~~~~~~ 369 (636)
T PRK13795 302 ADAGDAFWRAVEKFGPPARDYRWCCKVCKLGPITRAIKENF---P-KGCLTFVGQRKYESFSRAK--------SPRVWRN 369 (636)
T ss_pred EcccHhHHHhhhccCCCccccccchhhHhHHHHHHHHHhhC---C-CceEEEEEEEccchHHHhh--------CcccccC
Confidence 99988887766555445444446665432 22333333332 0 1235668886555322110 0011110
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.. . .+...+.||.+++..||..|....++|..-++++-|+
T Consensus 370 ~~---~---~~~~~~~PI~~Wt~~dVw~YI~~~~lp~npLY~~Gy~ 409 (636)
T PRK13795 370 PW---V---PNQIGASPIQDWTALEVWLYIFWRKLPYNPLYERGFD 409 (636)
T ss_pred CC---C---CCcEEEechHhCCHHHHHHHHHHhCCCCChHHHCCCC
Confidence 00 1 1223689999999999999999999998767776665
|
|
| >PRK12563 sulfate adenylyltransferase subunit 2; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-10 Score=110.87 Aligned_cols=178 Identities=16% Similarity=0.066 Sum_probs=113.8
Q ss_pred cchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHh---CCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 207 ENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAI---GDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 207 ~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~---g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
+....+.+..|++.+...+++++++|||+||+|+++|+.+++ +..+-++|+|+|...++-.+-. +.+++++|++++
T Consensus 20 ~~le~esi~ilrea~~~f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efr-D~~a~~~gl~Li 98 (312)
T PRK12563 20 DRLEAESIHILREVVAECSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFR-DRRAKELGLDLV 98 (312)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHH-HHHHHHhCCcEE
Confidence 334455556666665545678999999999999999999986 3578899999999766554444 458999999999
Q ss_pred EEECchHHHHhhcCCCCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccc
Q 039743 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKS 362 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt 362 (531)
+....+.+.. +........+.||+.+. .-+.+..++.+ .+.+++|.-.+|-..+.. ..+.+
T Consensus 99 v~~~~~~~~~---G~~~~~~~~~~~c~~~Kv~pL~raL~~~g------~da~itG~RRdE~~sRak---------~~ifs 160 (312)
T PRK12563 99 VHHNPDGIAR---GIVPFRHGSALHTDVAKTQGLKQALDHHG------FDAAIGGARRDEEKSRAK---------ERIFS 160 (312)
T ss_pred EecChHHHHh---CCCcccCCHHHHhhHHhHHHHHHHHHhcC------CCEEEEecCHHHhhhhcc---------Cceec
Confidence 8876554422 22111111234555432 45555555555 799999997776433210 00111
Q ss_pred c----cc-cC--CCCcc----------cccceecccccCCHHHHHHHHHHcCCCcccc
Q 039743 363 H----HN-VG--GLPKD----------MKLKLIEPLKLLFKDEVRQLGRILNVPEQFL 403 (531)
Q Consensus 363 ~----~~-~~--~l~~~----------~~~~ii~PL~~l~K~eVr~la~~lglp~~~~ 403 (531)
. +. +. +.|.. -..--+.||.+++..+|.+|.+..+||..-+
T Consensus 161 ~r~~~~~wD~~~qrPelw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pL 218 (312)
T PRK12563 161 FRSAFHRWDPKAQRPELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLVPL 218 (312)
T ss_pred ccccccccCccccChhhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCCcc
Confidence 0 00 00 00100 0123579999999999999999999996433
|
|
| >cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS) | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-10 Score=106.44 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=85.7
Q ss_pred cccCCCCEEEEcCCCCCCCC--CCCCCCh-HHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEE-eecCcccceeeeEEEec
Q 039743 44 ITAKNPRVVILSGGPHSVHS--PDAPAFP-AGFLEWALSNGVYVLGICYGLQLMVQKLDGVV-KVGEKQEYGRMEILVER 119 (531)
Q Consensus 44 ~~~~~~dgiIlsGGp~s~~~--~~~~~~~-~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v-~~~~~~e~G~~~v~~~~ 119 (531)
+...++||+|++|.|...++ +...|-+ .++++++.++..|+||||+|+|+...+++|.. ...+...+|....++..
T Consensus 58 i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~Gvf~~~~~~ 137 (175)
T cd03131 58 IRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFGVFPHTILE 137 (175)
T ss_pred ccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEEEEEeeecC
Confidence 44678999999999984333 3223322 47899999999999999999999999999986 66778888988777766
Q ss_pred CCccccCCCCCceEEEEeeccCcccc--C--CCCcEEEE
Q 039743 120 SSGIFGNKKVGHHQVVWMSHGDEAVV--L--PDGFEVVA 154 (531)
Q Consensus 120 ~~~l~~~~~~~~~~~v~~~H~~~v~~--l--p~g~~vla 154 (531)
.+||++++++. |.+.++|.+.|.. + .++++++|
T Consensus 138 ~hpL~~g~~d~--F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 138 PHPLLRGLDDG--FDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred CCccccCCCCc--eeecCcccccCCHHHHhhCCCCEEcc
Confidence 78999999988 9999999877741 2 45666654
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti |
| >PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.4e-10 Score=103.95 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=88.9
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCccccc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKR 305 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr 305 (531)
+++|++|||+||+|+++|+.++ +.++..+|+|+|...++-.+.+ +.+++.+|+++++......+.........|....
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~-~~~~~vv~~dtg~e~p~t~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREA-GRKVPVVFIDTGYEFPETYEFV-DELAKRYGIPIIVYRPPETFEQRFILYGWPSKLW 78 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHH-HTTCEEEEEE-STB-HHHHHHH-HHHHHHTTCEEEEEETTSHHHHHHHHHHHSTTHH
T ss_pred CeEEEecCCHHHHHHHHHHHHh-cCCCcEEEEecCccCHHHHHHH-HHHHhhhhhhhhhcccccchhhccccccccchhh
Confidence 4789999999999999999998 4457899999998755444444 4488899999888888765433332111121110
Q ss_pred c-hhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceeccccc
Q 039743 306 K-IIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKL 383 (531)
Q Consensus 306 ~-~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~ 383 (531)
. .|+..+ .+-+.+..++.+ ...++.|.-.++-.. |. ....+.... .. ....-+.||.+
T Consensus 79 ~~~c~~~~K~~p~~~~~~~~~------~~~~~~G~R~~Es~~-----R~---~~~~~~~~~---~~---~~~~~~~Pi~~ 138 (174)
T PF01507_consen 79 RWWCCSILKVKPLRRALKEYG------KDVWIIGVRADESPR-----RA---KLPMFEFDE---DN---PKIIRVYPIAD 138 (174)
T ss_dssp HHHHHHHHTHHHHHHHHHHTT------ESEEE----TTSTTG-----CC---GSSSEEEET---TT---TSEEEE-TTTT
T ss_pred hHHHHHHHHHHHHhhhhcchH------HHHHHHHHHhhchhh-----hh---hchhhhccc---cc---CCEEEEEehhh
Confidence 0 122221 223344445554 678889986554322 11 000111100 11 01335679999
Q ss_pred CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 384 LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 384 l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
++++||.++.++.|+|..-++...|+
T Consensus 139 wt~~dV~~yi~~~~l~~~~lY~~g~~ 164 (174)
T PF01507_consen 139 WTEEDVWDYIKANGLPYNPLYDKGYS 164 (174)
T ss_dssp --HHHHHHHHHHHT--B-HHHHCT-S
T ss_pred CCHHHHHHHHHHhcCCCcHHHHCcCC
Confidence 99999999999999997666666554
|
PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A. |
| >TIGR01001 metA homoserine O-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-10 Score=109.58 Aligned_cols=184 Identities=15% Similarity=0.101 Sum_probs=129.0
Q ss_pred EEEEEeCCC---CcHHHHHHHHHHCCCEEEEEe--CC------C----------ChhccccCCCCEEEEcCCCCC--CCC
Q 039743 7 LVLILDYGS---QYTHLITRRIRSLSILSLCLS--GT------C----------SLDDITAKNPRVVILSGGPHS--VHS 63 (531)
Q Consensus 7 ~I~IlD~G~---~~~~~i~r~l~~~G~~~~v~~--~~------~----------~~~~~~~~~~dgiIlsGGp~s--~~~ 63 (531)
+|+||..=. .....+.|.|.+....+++.. .. . ++++++..++||+|++|-|-- .++
T Consensus 37 ~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l~Fe 116 (300)
T TIGR01001 37 EILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELVPFE 116 (300)
T ss_pred eEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCCCcc
Confidence 689996632 223346666665555544421 11 1 234455678999999999873 344
Q ss_pred CCCCCCh-HHHHHHHHhCCCcEEEeeHHHHH-HHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccC
Q 039743 64 PDAPAFP-AGFLEWALSNGVYVLGICYGLQL-MVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGD 141 (531)
Q Consensus 64 ~~~~~~~-~~l~~~~~~~~iPvLGIC~G~Ql-la~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~ 141 (531)
+...|-+ .++++++.++....|.||+|+|. |....|-.-...+..-+|...-++.+.+||++|+++. |.+.+|..-
T Consensus 117 eV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfGVf~h~~~~~~pL~rGfdd~--f~~PhSR~t 194 (300)
T TIGR01001 117 DVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSGVYKHDIAPDSLLLRGFDDF--FLAPHSRYA 194 (300)
T ss_pred cCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCceEEeecCccCCCCccccCCCCc--cccCCCCCC
Confidence 4444543 47999999999999999999999 5555666666667778897776556778999999987 777776643
Q ss_pred ccc--cC--CCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhh
Q 039743 142 EAV--VL--PDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRY 192 (531)
Q Consensus 142 ~v~--~l--p~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~ 192 (531)
.+. .+ .++++++|.|+...+..+..++++.+=++.|||.+......+..|+
T Consensus 195 ~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d~r~vfi~GH~EYd~~TL~~EY~RD 249 (300)
T TIGR01001 195 DFDAEDIDKVTDLEILAESDEAGVYLAANKDERNIFVTGHPEYDAYTLHQEYVRD 249 (300)
T ss_pred CCCHHHHhcCCCCeEEecCCCcceEEEEcCCCCEEEEcCCCccChhHHHHHHHHH
Confidence 442 22 3589999999877777777777777779999999876555555544
|
The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames. |
| >cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.1e-10 Score=104.87 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=104.5
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCCh------hHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRY------KERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~------~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~ 299 (531)
|+++++|||+||+++++++.+. |.++.|+++..+.... .+.+.+.+ +|+.+|||+++++++. .
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~-G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~-~A~~lgipl~~i~~~~---------~ 69 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE-GHEVVALLNLTPEEGSSMMYHTVNHELLEL-QAEAMGIPLIRIEISG---------E 69 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc-CCEEEEEEEEecCCCCcccccccCHHHHHH-HHHHcCCcEEEEeCCC---------C
Confidence 5899999999999999999995 9999999988654322 25555554 8999999999998842 1
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
++. +. +.+++.+.+.+++ | .+.++.|++++|..-+ -+. .+....+++.+.
T Consensus 70 ~e~----~~-~~l~~~l~~~~~~-g------~~~vv~G~i~sd~~~~------------~~e------~~~~~~gl~~~~ 119 (194)
T cd01994 70 EED----EV-EDLKELLRKLKEE-G------VDAVVFGAILSEYQRT------------RVE------RVCERLGLEPLA 119 (194)
T ss_pred chH----HH-HHHHHHHHHHHHc-C------CCEEEECccccHHHHH------------HHH------HHHHHcCCEEEe
Confidence 122 11 3455555555554 5 8999999999885321 001 122234567899
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCC-CCcchH
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD-VTEGNS 426 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~-vt~~~l 426 (531)
||=.....++-+---..|+..-++.-.. .+|--.++|. +|++.+
T Consensus 120 PLW~~~~~~ll~e~~~~g~~~~iv~v~~---~~L~~~~lG~~~~~~~~ 164 (194)
T cd01994 120 PLWGRDQEELLREMIEAGFKAIIIKVAA---EGLDESWLGREIDEMFI 164 (194)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEEecc---CCCCHHHCCCCccHhhH
Confidence 9988888887776678888754433222 2354455654 344443
|
Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus. |
| >COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=96.63 Aligned_cols=141 Identities=24% Similarity=0.342 Sum_probs=95.1
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh------cCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL------KGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l------~~~~ 299 (531)
++-+.||||+||+++|.++.+. |+++..|+++-|.....+ .+.+ -|+.+|.+|+++..+...++.- .|.
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~kl-gyev~LVTvnFGv~d~~k--~A~~-tA~~lgF~h~vl~Ldr~ile~A~em~iedg~- 76 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKL-GYEVELVTVNFGVLDSWK--YARE-TAAILGFPHEVLQLDREILEDAVEMIIEDGY- 76 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHh-CCCcEEEEEEeccccchh--hHHH-HHHHhCCCcceeccCHHHHHHHHHHHHhcCC-
Confidence 4778999999999999888886 999999999999986554 3444 5778999999999986554331 122
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
|....+++-+ ..++..|.. . .+.+++||-.||-. ++... +..+. +....+..-++
T Consensus 77 -P~~aIq~iH~---~alE~~A~r-~------~~~iaDGTRRDDrv---P~ls~--~~~qS---------LEdR~nv~Yi~ 131 (198)
T COG2117 77 -PRNAIQYIHE---MALEALASR-E------VDRIADGTRRDDRV---PKLSR--SEAQS---------LEDRLNVQYIR 131 (198)
T ss_pred -CchHHHHHHH---HHHHHHHHH-H------HHHHcCCCcccccC---ccccH--HHHhh---------HHHhcCceeec
Confidence 3322222211 234444443 2 68899999998843 22211 01222 33334556889
Q ss_pred ccccCCHHHHHHHHHHc
Q 039743 380 PLKLLFKDEVRQLGRIL 396 (531)
Q Consensus 380 PL~~l~K~eVr~la~~l 396 (531)
||..+.+.-|+.++..+
T Consensus 132 PL~G~G~kti~~Lv~~~ 148 (198)
T COG2117 132 PLLGLGYKTIRRLVSAI 148 (198)
T ss_pred ccccccHHHHHHHHHHH
Confidence 99999999999998765
|
|
| >PRK08557 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.1e-09 Score=108.91 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=111.0
Q ss_pred hhhhhhhhhhcccc---C-ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 209 VLDEEVKCIKDTVG---L-EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 209 ~~~~~~~~i~~~v~---~-~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
+..+.++.|++.+. . ...+++++|||+||+++++++.++ +.++.++|+|+|...++..+. .+.+++.+|+++++
T Consensus 162 ~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~-~~~i~vvfvDTG~efpET~e~-ve~v~~~ygl~i~v 239 (417)
T PRK08557 162 LEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEV-IPDLEVIFIDTGLEYPETINY-VKDFAKKYDLNLDT 239 (417)
T ss_pred HHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHh-CCCCEEEEEECCCCCHHHHHH-HHHHHHHhCCCEEE
Confidence 34444555555432 1 246889999999999999999887 567899999999876544444 44589999999999
Q ss_pred EECchHHHHhhcCCCCcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 285 VDATDQFLSKLKGVIDPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 285 vd~~~~f~~~l~~~~~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
++.+ .|...+....-|....+.||..+ ..-+.+..++.- +.+....++|.-.++-.. |.. .....
T Consensus 240 ~~~~-~f~~~~~~~G~Ps~~~RwCc~~lKi~Pl~r~lk~~~---~~~~~l~i~G~Rr~ES~~-----Ra~---~~~~~-- 305 (417)
T PRK08557 240 LDGD-NFWENLEKEGIPTKDNRWCNSACKLMPLKEYLKKKY---GNKKVLTIDGSRKYESFT-----RAN---LDYER-- 305 (417)
T ss_pred Eech-HHHHHHhhccCCcccchhhhHHHhHHHHHHHHHhhc---CcCceEEEEeeecccchh-----hcc---Cceec--
Confidence 9854 45554433333443445676543 223333333311 111345678875443222 110 00000
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
..+-++ ..--++|+.+++..||.++.+..++|..-++.+-|+
T Consensus 306 -~~~~~~---~~~~i~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~ 347 (417)
T PRK08557 306 -KSGFID---FQTNVFPILDWNSLDIWSYIYLNDILYNPLYDKGFE 347 (417)
T ss_pred -cccccc---CceeEEecccCCHHHHHHHHHHcCCCCCchhhCCCC
Confidence 001111 112469999999999999999999997666665554
|
|
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-08 Score=106.14 Aligned_cols=221 Identities=16% Similarity=0.233 Sum_probs=112.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCC-EEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSI-LSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~-~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
+|.||+.+| ..++++.+|. .++++..+. .+++ .++|+||||||.... . ..+...+.+...+.++|||
T Consensus 2 ~iGvlal~s-----v~~al~~lg~~~~~vv~~~~-~~~l--~~~D~lILPGG~~~~--~--~~l~~~l~~~i~~~g~pvl 69 (476)
T PRK06278 2 EIGLLDIKG-----SLPCFENFGNLPTKIIDENN-IKEI--KDLDGLIIPGGSLVE--S--GSLTDELKKEILNFDGYII 69 (476)
T ss_pred EEEEEehhh-----HHHHHHHhcCCCcEEEEeCC-hHHh--ccCCEEEECCCchhh--c--chHHHHHHHHHHHcCCeEE
Confidence 699999765 4566777775 555544332 3344 578999999984210 0 0112334444445599999
Q ss_pred EeeHHHHHHHHHcCCEEeec---CcccceeeeEE-------------EecCCccccCCCCCceEEEEeeccCccccCCC-
Q 039743 86 GICYGLQLMVQKLDGVVKVG---EKQEYGRMEIL-------------VERSSGIFGNKKVGHHQVVWMSHGDEAVVLPD- 148 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~---~~~e~G~~~v~-------------~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~- 148 (531)
|||.|||||++..-..+... ...-.|.-+++ +... ..+.. . ...+.-|..|.+....+.+
T Consensus 70 GICgG~QmLg~~~~eg~e~~~~~~~~GLGll~~~~~~~K~~~~v~g~v~~~-~~~~~-~-~~~v~GyEiH~~G~t~~~~~ 146 (476)
T PRK06278 70 GICSGFQILSEKIDIGRKSPVPIIKEGLGLLDVEFSPLICTDRVEFKIEDD-SLFTK-K-NERGTGFHCHTYGNIEINGD 146 (476)
T ss_pred EEcHHHHhcccccccCcccccccccCccceeeeeecCceeEeEEEEEEEec-ccccC-C-CCEEEEEeeccCCEEEECCC
Confidence 99999999998752111000 00112222211 1111 11110 1 1126677788744333211
Q ss_pred --CcE----EEEE----eCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhh
Q 039743 149 --GFE----VVAR----SQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIK 218 (531)
Q Consensus 149 --g~~----vla~----s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~ 218 (531)
.+. .... ......+++. +++++|+++|..+... .+-+.|+ +..+...+-. +-+.++-+.++
T Consensus 147 ~~~l~~~~~~~~~~~~~~~~~~~eG~~--~g~V~GTYlHGifdn~----~~~~~~L-~~l~~~~~~~--~~~~~~~~~~~ 217 (476)
T PRK06278 147 TKILTYSKIQKLNYKMVGEKEILSGVF--KGKVFGTMVHNFLDNP----FVVENFL-KYLKIKEDEK--EEIFKKNKILK 217 (476)
T ss_pred ccchhhcceeeeeccCCCCcCCcCcee--cCCEEEEecCcccCCH----HHHHHHH-HHcCCChHHH--HHHHHHhHHHH
Confidence 121 1110 1111235655 5789999999998853 2333343 5444433211 11222222233
Q ss_pred cccc---------------Cccc-eeeccCCCCCHHHHHHHHHHHhCCc
Q 039743 219 DTVG---------------LEDH-VICALSGGVDSTVAATLVHKAIGDR 251 (531)
Q Consensus 219 ~~v~---------------~~~k-vvvalSGGvDS~v~a~l~~k~~g~~ 251 (531)
+.+. +..+ ++.|-+.|+==|+++..+.+++..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 218 EKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred HHHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 3221 0122 4557777887788877777776555
|
|
| >KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.1e-09 Score=93.82 Aligned_cols=172 Identities=15% Similarity=0.230 Sum_probs=89.7
Q ss_pred CEEEEEeCCCCcHHH---HHHHHHHC--CCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC--CCCCChHHHHHHHH
Q 039743 6 ELVLILDYGSQYTHL---ITRRIRSL--SILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP--DAPAFPAGFLEWAL 78 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~---i~r~l~~~--G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~--~~~~~~~~l~~~~~ 78 (531)
..|.||...+.|... +-|.+-+. ++..++.+..+.. + ..+.||+|+|||.++.... ....+-+.+....-
T Consensus 12 ~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~~-D--~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVh 88 (226)
T KOG3210|consen 12 VVIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKTKN-D--LAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVH 88 (226)
T ss_pred eEEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEeecCHH-H--HhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhc
Confidence 358899888877432 22333333 4455566655432 3 3678999999998853221 11122334443333
Q ss_pred hCCCcEEEeeHHHHHHHHHcCCEEeec----------CcccceeeeEEEecCCccccCC-CCCceEEEEeeccCccccCC
Q 039743 79 SNGVYVLGICYGLQLMVQKLDGVVKVG----------EKQEYGRMEILVERSSGIFGNK-KVGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 79 ~~~iPvLGIC~G~Qlla~~~GG~v~~~----------~~~e~G~~~v~~~~~~~l~~~~-~~~~~~~v~~~H~~~v~~lp 147 (531)
...+|++|.|.||-+|.+.+.+.-.-. ....||......+... -|.++ +....|.+-+.....++.+-
T Consensus 89 n~~k~~WGTCAGmI~LS~ql~nek~~~~tL~~lkv~V~RN~FG~QaqSFT~~~-~~snfi~~~~~FpATFIRAPVie~IL 167 (226)
T KOG3210|consen 89 NPSKVTWGTCAGMIYLSQQLSNEKKLVKTLNLLKVKVKRNAFGRQAQSFTRIC-DFSNFIPHCNDFPATFIRAPVIEEIL 167 (226)
T ss_pred CCCccceeechhhhhhhhhhcCCcchhhhhhheeEEEeeccccchhhhheehh-cccccccCcccCchhheechhHHHhc
Confidence 334999999999999988653321100 0012343333332221 11111 11111444444444444433
Q ss_pred CCcEEEEEe--C-CC--cEEEEEECCCcEEEEecCCCCCC
Q 039743 148 DGFEVVARS--Q-QG--AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 148 ~g~~vla~s--~-~~--~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
+...+.+.. + +| .+.|.+ .+++++++.||||.+.
T Consensus 168 D~I~V~~l~~~~~nG~~~iVAa~-Q~~~iL~TSFHPELa~ 206 (226)
T KOG3210|consen 168 DPIHVQVLYKLDGNGQELIVAAK-QKNNILATSFHPELAE 206 (226)
T ss_pred CchhheEEEEecCCCcEEEEEEe-ccCCEeeeecChhhhc
Confidence 444333332 2 22 344444 3588999999999874
|
|
| >cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ) | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-09 Score=100.99 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=64.4
Q ss_pred EEEEeCC-CCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC--CCChHHHHHHHHhCCCcE
Q 039743 8 VLILDYG-SQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA--PAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 8 I~IlD~G-~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~--~~~~~~l~~~~~~~~iPv 84 (531)
|+|++|| .++..++.++++..|++++++....+ ..++|+|||+||.+...+-.. ..-..+.++.+.++++||
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~-----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pv 75 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEG-----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPV 75 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCC-----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcE
Confidence 5788997 78888999999999999998876544 246799999999853211100 011234455566789999
Q ss_pred EEeeHHHHHHHHHcC
Q 039743 85 LGICYGLQLMVQKLD 99 (531)
Q Consensus 85 LGIC~G~Qlla~~~G 99 (531)
||||.|||+|++.+.
T Consensus 76 lgiC~G~qlL~~~~~ 90 (194)
T cd01750 76 LGICGGYQMLGKYIV 90 (194)
T ss_pred EEECHHHHHhhhhcc
Confidence 999999999999873
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ. |
| >TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin) | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.4e-08 Score=93.47 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=98.8
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh--cCC----
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL--KGV---- 298 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l--~~~---- 298 (531)
+++++.+|||+||+|++.|+.++ +.++..+|+|+|..-++-.+-+. .+++.++++++++.....+.... .+.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~-~~~~~v~f~DTg~efpeT~efv~-~~~~~~~l~i~~~~~~~~~~~~~~~~g~~~~~ 91 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKI-SPDIPVIFLDTGYHFPETYELID-ELTERYPLNIKVYKPDLSLAEQAAKYGDKLWE 91 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc-CCCCcEEEecCCCCCHHHHHHHH-HHHHHhCCceEEECCchhHHHHHHhcCCCccc
Confidence 47999999999999999999997 56788999999998765555544 47888999988886653332211 120
Q ss_pred CCcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccce
Q 039743 299 IDPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKL 377 (531)
Q Consensus 299 ~~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~i 377 (531)
.++. .||..+ ..-+.+..++.+ ...+++|.-.+|-.. |.. ...+. .....+.--
T Consensus 92 ~~~~----~cc~~~K~~pl~~~l~~~~------~~~~i~GiR~~Es~~-----R~~---~~~~~-------~~~~~~~~~ 146 (212)
T TIGR00434 92 QDPN----KYDYLRKVEPMHRALKELH------ASAWFTGLRRDQGPS-----RAN---LSILN-------IDEKFGILK 146 (212)
T ss_pred cChH----HHhhHHhHHHHHHHHHhcC------CcEEEEecccccCcc-----ccC---Cceee-------ecCCCCcEE
Confidence 1221 233221 122333333333 456667875554221 110 00000 001112346
Q ss_pred ecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 378 IEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 378 i~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+.||.+++..||-++.++.|||..-++++-|+
T Consensus 147 v~PI~dWt~~dVw~Yi~~~~lp~npLY~~Gy~ 178 (212)
T TIGR00434 147 VLPLIDWTWKDVYQYIDAHNLPYNPLHDQGYP 178 (212)
T ss_pred EeehhhCCHHHHHHHHHHcCCCCCchhhcCCC
Confidence 89999999999999999999997666666544
|
This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS. |
| >PHA03366 FGAM-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6e-08 Score=114.73 Aligned_cols=176 Identities=13% Similarity=0.140 Sum_probs=109.6
Q ss_pred CCEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCC-hhccccCCCCEEEEcCCCCCC--CCCCCCC---------ChH
Q 039743 5 PELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCS-LDDITAKNPRVVILSGGPHSV--HSPDAPA---------FPA 71 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~-~~~~~~~~~dgiIlsGGp~s~--~~~~~~~---------~~~ 71 (531)
.+||+|+-+ |+......+++++.+|+++..+..+.- .... +.+++||+++||.+.- .+...-| +..
T Consensus 1028 ~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~-l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~ 1106 (1304)
T PHA03366 1028 RHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTF-LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRD 1106 (1304)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCc-cccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHH
Confidence 368999977 666677899999999999888876432 1222 5788999999998831 1111111 112
Q ss_pred HHHHHHHhCCCcEEEeeH-HHHHHHHH--cC-----------------CEEeecCcc--cceeeeEEEec--CCccccCC
Q 039743 72 GFLEWALSNGVYVLGICY-GLQLMVQK--LD-----------------GVVKVGEKQ--EYGRMEILVER--SSGIFGNK 127 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC~-G~Qlla~~--~G-----------------G~v~~~~~~--e~G~~~v~~~~--~~~l~~~~ 127 (531)
++.+.+.+.+.++||||. |+|+|++. +| .+..++... |--|..+++.+ .+.+++++
T Consensus 1107 ~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~~~~~~~~p~g~i~~~~~~~l~~N~s~rfesr~~~v~i~~~s~Si~l~~~ 1186 (1304)
T PHA03366 1107 ALLRFLNRPDTFSLGCGELGCQILFALKAVGSTAPSPVPGTETEEQWPITLEPNASGLYESRWLNFYIPETTKSVALRPL 1186 (1304)
T ss_pred HHHHHHhCCCCeEEEeCcHHHHHHHHcCCccCCccccccccccccCCCCeEeeeCCCCeEeeceEEEeCCCCCCcccccc
Confidence 333333356999999999 99999983 32 233333222 33466666655 45677777
Q ss_pred CCCceEEEEeeccCc-c--c------cC-CCCcEEEE----------------EeCC--CcEEEEEECCCcEEEEecCCC
Q 039743 128 KVGHHQVVWMSHGDE-A--V------VL-PDGFEVVA----------------RSQQ--GAVAAVENREKRLFGLQYHPE 179 (531)
Q Consensus 128 ~~~~~~~v~~~H~~~-v--~------~l-p~g~~vla----------------~s~~--~~v~ai~~~~~~i~gvQFHPE 179 (531)
.+. .+.+|..|... + . .+ ..|...+- .+++ ..|+++.+++++++|+++|||
T Consensus 1187 ~Gs-~lP~w~~g~~~~~~~~~~~~~~~l~~~~~ia~~Y~d~~~~~g~~t~~yP~NPNGS~~IaGi~s~dGR~l~mMphPe 1265 (1304)
T PHA03366 1187 RGS-VLPCWAQGTHLGFRYPNDGMEYILRNSGQIAATFHGADVDPGNPARHYPRNPTGNSNVAGLCSADGRHLALLFDPS 1265 (1304)
T ss_pred CCC-CCCEEeCCCccccccCCHHHHHHHHhCCcEEEEEeCCCCCcCccccCCCCCCCcCcceeeEECCCCCEEEecCCHH
Confidence 643 46777544331 1 0 11 11111111 1222 358999999999999999999
Q ss_pred CCC
Q 039743 180 VTH 182 (531)
Q Consensus 180 ~~~ 182 (531)
+.-
T Consensus 1266 r~~ 1268 (1304)
T PHA03366 1266 LSF 1268 (1304)
T ss_pred Hhh
Confidence 864
|
|
| >TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-08 Score=94.93 Aligned_cols=160 Identities=13% Similarity=0.041 Sum_probs=99.3
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEE--ECchHHHH--hhcCC-
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCV--DATDQFLS--KLKGV- 298 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vv--d~~~~f~~--~l~~~- 298 (531)
.+++++++|||+||+|+++|++++.+.++-.+|+|+|...++-.+-+. .+++.+++++.++ ........ ...|.
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~~~i~vv~vDTg~~fpET~e~~d-~~~~~~~~~l~v~~~~~~~~~~~~~~~~G~~ 103 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQTLTLKD-ELTKKYYQTLNLYKYDGCESEADFEAKYGKL 103 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhCCCCCEEEEeCCCCCHHHHHHHH-HHHHHhCCceEEEEeCCchhHHHHHHhcCCC
Confidence 357999999999999999999998536888999999998775555544 4888999544443 33221111 11121
Q ss_pred ---CCcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 299 ---IDPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 299 ---~~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
.++ . .||..+. +=+.+..++++ .+..++|.-.++- . .+.. ...+ .......
T Consensus 104 ~~~~~~-~---~cc~~~Kv~Pl~ral~~~~------~~~~itG~Rr~es-~----~Ra~---~~~~-------~~d~~~~ 158 (226)
T TIGR02057 104 LWQKDI-E---KYDYIAKVEPMQRALKELN------ASAWFTGRRRDQG-S----ARAN---LPVI-------EIDEQNG 158 (226)
T ss_pred ccccCH-H---HHHHHHhhHHHHHHHHhcC------CCEEEEecchhhC-c----cccC---Cccc-------cccCCCC
Confidence 122 2 2333321 23333344443 5678889754432 1 1110 0000 0001112
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.--+.||.+++..||.+|.++.+||..-++++-|+
T Consensus 159 ~~kv~Pi~~Wt~~dVw~Yi~~~~lP~npLY~~GY~ 193 (226)
T TIGR02057 159 ILKVNPLIDWTFEQVYQYLDAHNVPYNPLLDQGYR 193 (226)
T ss_pred eEEEeehhhCCHHHHHHHHHHcCCCCCchhhcCCC
Confidence 33679999999999999999999998878877776
|
Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite. |
| >COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.2e-08 Score=95.46 Aligned_cols=161 Identities=16% Similarity=0.108 Sum_probs=108.4
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHh---hcCCCCc
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSK---LKGVIDP 301 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~---l~~~~~p 301 (531)
..+++++|||+||+|+++|+.+++ .++..+|+|+|...++-.+.+.+ +++++|+++.+......+... ...+..|
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~k~~-~~~~vif~DTg~~f~Et~~~~d~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 117 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAAKAF-PDFPVIFLDTGYHFPETYEFRDR-LAEEYGLDLKVYRPDDEVAEGEKYGGKLWEP 117 (261)
T ss_pred CCeEEEecCchhHHHHHHHHHHhc-CCCcEEEEeCCCcCHHHHHHHHH-HHHHcCCeEEEecCccchhhhhhcccCCCCC
Confidence 358999999999999999999994 45999999999987766666555 899999999998888777666 4444334
Q ss_pred c-cccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 302 E-TKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 302 ~-~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
. ++ .||..+. .=+.+..++++ .+.+++|.-.++- .+ +. .+.-....+..+ +.--+.
T Consensus 118 ~~~r--~c~~i~K~~pl~~al~~~~------~~a~~~G~Rrdes-~~----Ra------k~~~~~~~~~~~---~~~rv~ 175 (261)
T COG0175 118 SVER--WCCDIRKVEPLKRALDEYG------FDAWFTGLRRDES-PT----RA------KLPVVSFDSEFG---ESIRVN 175 (261)
T ss_pred Ccch--hhhhhHhhhhHHHHHhhcC------CceEEEecccccc-cc----cc------cCceeccccCcC---CeEEEc
Confidence 4 33 3443322 23333344443 4678889744432 21 11 000000010100 234789
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
||.+++..||..|....++|..-++.+=|+
T Consensus 176 Pl~~Wt~~dVw~Yi~~~~lp~npLy~~Gy~ 205 (261)
T COG0175 176 PLADWTELDVWLYILANNLPYNPLYDQGYR 205 (261)
T ss_pred chhcCCHHHHHHHHHHhCCCCCcHHhccCC
Confidence 999999999999999999998777776665
|
|
| >TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.7e-08 Score=115.12 Aligned_cols=174 Identities=16% Similarity=0.153 Sum_probs=107.4
Q ss_pred CCEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--C--C---------CCh
Q 039743 5 PELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--A--P---------AFP 70 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~--~---------~~~ 70 (531)
.+||+|+-| |+......+++++.+|+.+..+..+.-...-.+.+++||+++||.+ |++. + - .+.
T Consensus 929 ~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfs--y~D~lgsg~~~a~~il~n~~~~ 1006 (1202)
T TIGR01739 929 RHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASG--TLDSEVGARALAAALLRNQAFL 1006 (1202)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCC--CCccchHHHHHHHHhhcchHHH
Confidence 367999977 5555778999999999998888765422211246789999999877 3321 1 1 111
Q ss_pred HHHHHHHHhCCCcEEEeeH-HHHHHHHH--cCC-----------------EEeecCc--ccceeeeEEEec--CCccccC
Q 039743 71 AGFLEWALSNGVYVLGICY-GLQLMVQK--LDG-----------------VVKVGEK--QEYGRMEILVER--SSGIFGN 126 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGIC~-G~Qlla~~--~GG-----------------~v~~~~~--~e~G~~~v~~~~--~~~l~~~ 126 (531)
.++.+.+.+.+.++||||. |+|+|++. ++. +..++.. .|--|..+++.. .+.++++
T Consensus 1007 ~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~~~~~~~~~~~~~~~~~~~l~~N~s~~fesr~~~v~i~~~s~si~~~~ 1086 (1202)
T TIGR01739 1007 RDLLTFLNRPDTFSLGFGELGCQLLLALNIVGYTQSSPFITVPTEVQEPPRLEKNASGLYESRWLNFYIPETTKSVFLRP 1086 (1202)
T ss_pred HHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcCCcccccccccccccCCceeeecCCCCeEEeeeEEEeCCCCCChhhhh
Confidence 2233333356999999998 99999984 210 1222222 233455666654 4567888
Q ss_pred CCCCceEEEEeeccCc--c--c------cC-CCCcEEEEE----------------eCC--CcEEEEEECCCcEEEEecC
Q 039743 127 KKVGHHQVVWMSHGDE--A--V------VL-PDGFEVVAR----------------SQQ--GAVAAVENREKRLFGLQYH 177 (531)
Q Consensus 127 ~~~~~~~~v~~~H~~~--v--~------~l-p~g~~vla~----------------s~~--~~v~ai~~~~~~i~gvQFH 177 (531)
+... .+.+|. |+.. . . .+ ..|...+-. +++ ..|+++.+++++++|+++|
T Consensus 1087 ~~g~-~lp~wv-~g~~~g~~~~~~~~~~~l~~~g~va~~Y~d~~~~~g~~a~~yP~NPNGS~~IAGi~s~dGR~l~lMph 1164 (1202)
T TIGR01739 1087 LRGS-VLPCWA-QGTHLGLYHPDDGVEEELENSGQIASTFHGNSPSSGLPATNYPRNPSGGSNVAGLCSADGRHLALLID 1164 (1202)
T ss_pred cCCC-Eeccce-EeccCCcEECCHHHHHHHHhCCeEEEEEeCCCCCCCccccCCCCCCCcCcceeeEECCCCCEEEecCC
Confidence 7644 467775 4331 1 1 11 112111111 222 2689999999999999999
Q ss_pred CCCCC
Q 039743 178 PEVTH 182 (531)
Q Consensus 178 PE~~~ 182 (531)
||+.-
T Consensus 1165 Per~~ 1169 (1202)
T TIGR01739 1165 PSLSF 1169 (1202)
T ss_pred HHHhh
Confidence 99864
|
This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model. |
| >cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.1e-08 Score=91.33 Aligned_cols=153 Identities=12% Similarity=0.048 Sum_probs=86.6
Q ss_pred HHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCC--ChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 20 LITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPA--FPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~--~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-.++|+++|+++.++....+ +++ .++|+||||||........... -..+.++.+.++++||+|||.|||+|++.
T Consensus 15 e~~~~l~~~G~~v~~~s~~~~-~~l--~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 15 ENLELLEAAGAELVPFSPLKD-EEL--PDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGES 91 (198)
T ss_pred HHHHHHHHCCCEEEEECCCCC-CCC--CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHH
Confidence 345788999998887754211 223 3489999999865322111000 01244555667799999999999999996
Q ss_pred c----C----------CEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCC----CcEEEEE-eCC
Q 039743 98 L----D----------GVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPD----GFEVVAR-SQQ 158 (531)
Q Consensus 98 ~----G----------G~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~----g~~vla~-s~~ 158 (531)
+ | +++...+....|+..++...++++.. .... +.-+-.|.-... ..+ .+.+... ..+
T Consensus 92 ~~d~~g~~~~glGll~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~--v~G~E~H~g~t~-~~~~~~~~~~~~~~~~~~ 167 (198)
T cd03130 92 LDDEEGQSYPMAGVLPGDARMTKRLGLGYREAEALGDTLLGK-KGTT--LRGHEFHYSRLE-PPPEPDFAATVRRGRGID 167 (198)
T ss_pred hhccCCCEeccccccceeeEEcCCCcccCEEEEeecCccccC-CCCE--EEEEeccCcEee-cCCCcceEEEeccCCCCC
Confidence 5 2 23333334477888777654444322 1222 566667754332 111 1122211 111
Q ss_pred CcEEEEEECCCcEEEEecCCCCC
Q 039743 159 GAVAAVENREKRLFGLQYHPEVT 181 (531)
Q Consensus 159 ~~v~ai~~~~~~i~gvQFHPE~~ 181 (531)
....++.. ++++|...|=-..
T Consensus 168 ~~~dG~~~--~nv~gtY~Hg~f~ 188 (198)
T cd03130 168 GGEDGYVY--GNVLASYLHLHWA 188 (198)
T ss_pred CcccEEEE--CCEEEEEeeeecc
Confidence 12356654 6799999985443
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB. |
| >KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.5e-08 Score=94.24 Aligned_cols=160 Identities=15% Similarity=0.281 Sum_probs=108.3
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHhh--cCCC-
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSKL--KGVI- 299 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~l--~~~~- 299 (531)
.+++++|+|||.|.++.++++.+. |++|+|...|-|+ +++.+++.+ -|.+.|. ++.+.|.++.|.+.. +.+.
T Consensus 5 ~~~vVLAySGgLDTscil~WLkeq-GyeViay~AnvGQ--~edfe~ar~-kAlk~Gakk~~~ed~~~eFvedfi~Pa~qs 80 (412)
T KOG1706|consen 5 KKSVVLAYSGGLDTSCILAWLKEQ-GYEVIAYLANVGQ--KEDFEEARK-KALKSGAKKVVVEDVREEFVEDFIWPALQS 80 (412)
T ss_pred CceEEEEecCCcCchhhhHHHHhc-CceEEEeeccccc--hhhHHHHHH-hhhhcCceEEEehhhhHHHHhhcchhhhhh
Confidence 468999999999999999999996 9999999999998 566777765 3566776 577788888885442 0000
Q ss_pred Cc-ccccchhhHHHHH-----HHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc
Q 039743 300 DP-ETKRKIIGKEFIC-----IFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM 373 (531)
Q Consensus 300 ~p-~~kr~~~~~~~~~-----~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~ 373 (531)
+. =+.++.+|..+.| ..-++|.+.| +.++..|+ .|.| ++.++....-..+. -
T Consensus 81 ~a~YEd~YLLGTSlaRp~ia~~qv~va~~eg------~~aVsHGc-----------TGKG---NDQvrFELt~ysl~--P 138 (412)
T KOG1706|consen 81 SALYEDRYLLGTSLARPVIAKAQVDVAQREG------AKAVSHGC-----------TGKG---NDQVRFELTFYSLK--P 138 (412)
T ss_pred cchhhceeeeccccccchhhhhhhhHHhhcC------ceeeeccc-----------ccCC---CcceeeeeeeeccC--C
Confidence 00 0234445444322 2334566665 77887776 2333 45554432222332 2
Q ss_pred ccceeccccc--C-----CHHHHHHHHHHcCCCccccccCCCC
Q 039743 374 KLKLIEPLKL--L-----FKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 374 ~~~ii~PL~~--l-----~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
..+++.|++. + .+++..+||+..|+|.....+.|++
T Consensus 139 ~~kviapwrmp~f~~rf~Gr~Dl~eYakq~giPvpvT~k~pws 181 (412)
T KOG1706|consen 139 DVKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTPKNPWS 181 (412)
T ss_pred cceeeccccchHHHHhhcCchHHHHHHHhcCCCccccCCCCcc
Confidence 5679999887 2 3588999999999998777777765
|
|
| >cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-08 Score=96.58 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=83.2
Q ss_pred hhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH-HHH
Q 039743 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ-FLS 293 (531)
Q Consensus 215 ~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~-f~~ 293 (531)
+.++..+..+.+|.++||||+||+++++++++..+.++.++++..+....+|.+.+.+ +|+++|+++++++++.. +..
T Consensus 6 ~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~-~a~~l~~~~~~~~~~~~~~~~ 84 (269)
T cd01991 6 DAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARR-VAEHLGTEHHEVEFTPADLLA 84 (269)
T ss_pred HHHHHHhccCCceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCCCCChHHHHHH-HHHHhCCcceEEEcCHHHHHH
Confidence 3444445557899999999999999999999875555788888877665667777766 89999999999998743 222
Q ss_pred hhc----CCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccc
Q 039743 294 KLK----GVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIE 345 (531)
Q Consensus 294 ~l~----~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~e 345 (531)
.+. ...+|...+ .......+.+.|++.+ +..+++|+..|++..
T Consensus 85 ~~~~~~~~~~~p~~~~---~~~~~~~l~~~a~~~~------~~v~l~G~g~Delf~ 131 (269)
T cd01991 85 ALPDVIWELDEPFADS---SAIPLYLLSRLARKHG------IKVVLSGEGADELFG 131 (269)
T ss_pred HHHHHHHHhCCCCCCc---HHHHHHHHHHHHHHhC------CEEEEecCCcccccc
Confidence 221 112343221 1123344566666665 789999998887653
|
This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase . |
| >COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.8e-08 Score=90.65 Aligned_cols=138 Identities=25% Similarity=0.254 Sum_probs=88.1
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCC-hhHHHHHHHHHHHhCCCcEEEEECchHH--HHhhcCCCCc
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR-YKERERVMDTFEKDLHLPVTCVDATDQF--LSKLKGVIDP 301 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~-~~e~~~~~~~la~~lgi~~~vvd~~~~f--~~~l~~~~~p 301 (531)
-+++||+|||+||+..+.+++.+ | +++|.|.+. ++++.+-.+.+|+.+|+.+..+..+... ...+.|--.|
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~~-g-----~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~~i~kGalnGRfhp 134 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRWA-G-----FTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLEDIEKGALNGRFHP 134 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHhh-c-----eeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHHHHHHhhhccCCCCC
Confidence 48999999999999999888887 4 667766532 2355554555889999887777554221 1223333345
Q ss_pred ccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc-ccccceec
Q 039743 302 ETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK-DMKLKLIE 379 (531)
Q Consensus 302 ~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~-~~~~~ii~ 379 (531)
+-+| +.+ .+..++.|++++ .++++.|...+ .|+| .+.. +--+.+=-
T Consensus 135 CGRC----h~~I~~~V~~k~re~d------i~~vafGDlLs--------~G~~--------------svy~eD~i~rlnl 182 (255)
T COG1365 135 CGRC----HSMIENAVMDKARELD------IDVVAFGDLLS--------TGYG--------------SVYREDGIFRLNL 182 (255)
T ss_pred cchH----HHHHHHHHHHHHHhcC------CeEEEEccccc--------cccc--------------ceeccCCEEEEcc
Confidence 4332 333 346678888888 89999997543 2331 1111 11122333
Q ss_pred c-cccCCHHHHHHHHHHcCCCc
Q 039743 380 P-LKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 380 P-L~~l~K~eVr~la~~lglp~ 400 (531)
| +..++|+|+|.+.+..|...
T Consensus 183 PAflAltK~Elr~il~~~~~e~ 204 (255)
T COG1365 183 PAFLALTKDELRSILKWNGYEL 204 (255)
T ss_pred HHHHhhCcHHHHHHHHhcCccc
Confidence 4 45589999999999888753
|
|
| >TIGR03183 DNA_S_dndC putative sulfurtransferase DndC | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-07 Score=96.79 Aligned_cols=170 Identities=21% Similarity=0.205 Sum_probs=99.5
Q ss_pred hhhhcccc-CccceeeccCCCCCHHHHHHHHHHHhC--------CcEEEEEEeCCCCChhHHHHH------HHHHHHhCC
Q 039743 215 KCIKDTVG-LEDHVICALSGGVDSTVAATLVHKAIG--------DRLHCVFVDNGLLRYKERERV------MDTFEKDLH 279 (531)
Q Consensus 215 ~~i~~~v~-~~~kvvvalSGGvDS~v~a~l~~k~~g--------~~v~~v~id~g~~~~~e~~~~------~~~la~~lg 279 (531)
+.|++... .+...+|++|||+||++++.|+.+|+. ..++.++.|+|.-.+.-.+.+ .+..|++.|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~ 82 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQG 82 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555433 234589999999999999999998852 258888999998655322221 233567778
Q ss_pred CcEEEEEC----chHHHHhhcC--CCCcccccchhhHHH-H----HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC
Q 039743 280 LPVTCVDA----TDQFLSKLKG--VIDPETKRKIIGKEF-I----CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP 348 (531)
Q Consensus 280 i~~~vvd~----~~~f~~~l~~--~~~p~~kr~~~~~~~-~----~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~ 348 (531)
+++.+.-+ ...|+..+-| +..|..+...|+..+ + +.+.+..++.+ ...+++|+-.+ ||.
T Consensus 83 lpi~~~~v~P~~~~~Fwv~liGrG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g------~~v~vlGvR~~---ES~- 152 (447)
T TIGR03183 83 LPIEPHRLTPEIKDTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANG------EVILVLGTRKA---ESQ- 152 (447)
T ss_pred CCeEEEecCCCcchHHHHHHhcCCCCCCCCCCCccChHHHhhHHHHHHHHHHhccC------CeEEEEEeehh---hHH-
Confidence 77755332 3456666544 334444445666432 2 23333333333 56788998543 221
Q ss_pred CCCCCCCccccccccc--cc-CCCCc---ccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 349 PPGTGRTHSHTIKSHH--NV-GGLPK---DMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 349 ~~g~g~~~~~~ikt~~--~~-~~l~~---~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
.| +..++.+. ++ ..+.. ..+.-+++|+.+++-+||-.+....++|.
T Consensus 153 -~R-----A~~m~k~e~~~~r~~l~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~ 204 (447)
T TIGR03183 153 -AR-----AAVMEKHESGSLRDRLSRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPW 204 (447)
T ss_pred -HH-----HhhhhhhccccccccccccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCC
Confidence 11 11221110 00 00111 11334899999999999999999887764
|
Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase. |
| >PRK06850 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-07 Score=96.66 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=107.2
Q ss_pred cchhhhhhhhhhccccC-ccceeeccCCCCCHHHHHHHHHHHhC--------CcEEEEEEeCCCCChhHHHH------HH
Q 039743 207 ENVLDEEVKCIKDTVGL-EDHVICALSGGVDSTVAATLVHKAIG--------DRLHCVFVDNGLLRYKERER------VM 271 (531)
Q Consensus 207 ~~~~~~~~~~i~~~v~~-~~kvvvalSGGvDS~v~a~l~~k~~g--------~~v~~v~id~g~~~~~e~~~------~~ 271 (531)
...++..++.|++.... +...+|++|||+||++++.|+.+++. ..++.+|.|+|.-.+.-.+. ..
T Consensus 16 ~~~~~~~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i 95 (507)
T PRK06850 16 GEPIEELIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERI 95 (507)
T ss_pred hHHHHHHHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHH
Confidence 34567777888886543 34589999999999999999988863 25889999999854432222 12
Q ss_pred HHHHHhCCCcEEEEE----CchHHHHhhcC--CCCcccccchhhHH-HHH----HHHHHHHHhhhhcCCCCcEEEecccC
Q 039743 272 DTFEKDLHLPVTCVD----ATDQFLSKLKG--VIDPETKRKIIGKE-FIC----IFDAFAHDLEQKLGKKPAYLVQGTLY 340 (531)
Q Consensus 272 ~~la~~lgi~~~vvd----~~~~f~~~l~~--~~~p~~kr~~~~~~-~~~----~~~~~a~~~g~~~~~~~~~l~~Gt~~ 340 (531)
+..|++.|+|+.+.- ....|+..+-| +..|......|+.. .+. .+.+..++.+ ...+++|+-.
T Consensus 96 ~~~a~~~glpi~~~~v~P~~~~sFwv~liGrG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~g------e~v~vlGvR~ 169 (507)
T PRK06850 96 NEAAKKQGLPITPHKLTPKINDTFWVNLIGKGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFG------EVIVVLGVRK 169 (507)
T ss_pred HHHHHHcCCceEEEeeCCCcchhHHHHHhcCCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcC------cEEEEEEeec
Confidence 335778898876532 23567666544 44455455566643 222 2333333333 4677899854
Q ss_pred CCccccCCCCCCCCCcccccccccccCC-CC---cccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 341 PDVIESCPPPGTGRTHSHTIKSHHNVGG-LP---KDMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 341 ~D~~es~~~~g~g~~~~~~ikt~~~~~~-l~---~~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
+ ||. .| +..++.+-..+. +. ...+.-++.|+.+++-+||..+....++|.
T Consensus 170 ~---ES~--~R-----A~~m~~~~~~~~rl~~~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~ 223 (507)
T PRK06850 170 A---ESA--AR-----AQVMAKHEIEGSRLSRHTTLPNAFVYTPIEDWSNDDVWKYLLQWENPW 223 (507)
T ss_pred c---ccH--HH-----HhhhhhhcccCcceeeccCCCCcEEEeChHhCCHHHHHHHHHhcCCCC
Confidence 3 331 11 112211110000 10 011234789999999999999999887774
|
|
| >PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO) | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-07 Score=91.86 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=75.5
Q ss_pred hhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHH
Q 039743 212 EEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQF 291 (531)
Q Consensus 212 ~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f 291 (531)
.+.+.++..+..++++.+.+|||+||+++++++++..+..+.+++++.+.....|...+.+ +|+.+|++|+.++.+...
T Consensus 5 ~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~-va~~~~~~~~~~~~~~~~ 83 (255)
T PF00733_consen 5 LLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARK-VARHLGLEHHEIELDPED 83 (255)
T ss_dssp HHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHH-HHHHHT-EEEEEEE-HHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHH-Hhcccccccceeeechhh
Confidence 3345566666668899999999999999999999955789999999887776667777766 899999999999887532
Q ss_pred -HHhh----cCCCCcccccchhhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 292 -LSKL----KGVIDPETKRKIIGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 292 -~~~l----~~~~~p~~kr~~~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
.+.+ .....|..- ..... ....+.+.+++.| .+.+++|+..|.+.
T Consensus 84 ~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~a~~~~------~~~~ltG~GgDelf 134 (255)
T PF00733_consen 84 LLDNLEDIIWRLDGPSPL--DDPNSLPLYLLARLARENG------IRVLLTGQGGDELF 134 (255)
T ss_dssp HHHHHHHHHHHHT---HH--HHHHHHHHHHHHHHHCHTT------BSEEE--TTHHHHH
T ss_pred HHHhHHHHHHHHhCCccc--ccccccHHHHHHHhhcccc------eeEEEecccccccc
Confidence 2211 111123210 01111 1122334444444 89999999766665
|
Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F. |
| >COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-07 Score=87.78 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=109.3
Q ss_pred hhccccCCCCEEEEcCCCCC--CCCCCCCCCh-HHHHHHHHhCCCcEEEeeHHHHHHHHHcCC-EEeecCcccceeeeEE
Q 039743 41 LDDITAKNPRVVILSGGPHS--VHSPDAPAFP-AGFLEWALSNGVYVLGICYGLQLMVQKLDG-VVKVGEKQEYGRMEIL 116 (531)
Q Consensus 41 ~~~~~~~~~dgiIlsGGp~s--~~~~~~~~~~-~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG-~v~~~~~~e~G~~~v~ 116 (531)
+++++..++||+|++|-|-- .+++.+.|-+ .+++++...+-.-.|-||+|.|.--..+-| .=...+..-+|...-+
T Consensus 92 feeVk~~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl~GVy~h~ 171 (307)
T COG1897 92 FEEVKDQKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKLSGVYKHD 171 (307)
T ss_pred HHHHhhcccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhhhceeecc
Confidence 45566778999999999873 3444445543 478999888888999999999987776654 3334456668887766
Q ss_pred Ee-cCCccccCCCCCceEEEEeeccCcc-----ccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhh
Q 039743 117 VE-RSSGIFGNKKVGHHQVVWMSHGDEA-----VVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETL 190 (531)
Q Consensus 117 ~~-~~~~l~~~~~~~~~~~v~~~H~~~v-----~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~ 190 (531)
+. +.+++++|+.+. +.+.++..-.+ ...| ++++++.|+...+.-+..++++..-+-.|||.+.+....+.+
T Consensus 172 ~l~p~~~l~rGfdd~--f~~PhSR~t~~~~e~i~~~~-~LeIL~es~e~G~~l~a~k~~r~ifv~gH~EYD~~tL~~EY~ 248 (307)
T COG1897 172 ILSPHSLLTRGFDDS--FLAPHSRYTDVPKEDILAVP-DLEILAESKEAGVYLLASKDGRNIFVTGHPEYDATTLAQEYF 248 (307)
T ss_pred ccCccchhhccCCcc--ccCcccccccCCHHHHhhCC-CceeeecccccceEEEecCCCCeEEEeCCcchhhhHHHHHHH
Confidence 44 567899999988 77666544333 2233 699999998877777877778877788999998765555555
Q ss_pred hhh
Q 039743 191 RYF 193 (531)
Q Consensus 191 ~~F 193 (531)
|+-
T Consensus 249 RD~ 251 (307)
T COG1897 249 RDV 251 (307)
T ss_pred hhh
Confidence 543
|
|
| >cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.8e-07 Score=73.58 Aligned_cols=62 Identities=27% Similarity=0.408 Sum_probs=53.3
Q ss_pred eeeccCCCCCHHHHHHHHHHH--hCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccc
Q 039743 227 VICALSGGVDSTVAATLVHKA--IGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETK 304 (531)
Q Consensus 227 vvvalSGGvDS~v~a~l~~k~--~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~k 304 (531)
+++++|||.||+++++++.+. .+.++++++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~---------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV---------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH----------------------------------------------
Confidence 589999999999999999875 35788899987
Q ss_pred cchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcccc
Q 039743 305 RKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIES 346 (531)
Q Consensus 305 r~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es 346 (531)
.+++.+.+.+++.+ ++++++||+.+|..|+
T Consensus 35 ------~~~~~~~~~a~~~~------~~~Iv~G~~~~d~~~~ 64 (86)
T cd01984 35 ------AFVRILKRLAAEEG------ADVIILGHNADDVAGR 64 (86)
T ss_pred ------HHHHHHHHHHHHcC------CCEEEEcCCchhhhhh
Confidence 55677888888887 8999999999999885
|
The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide. |
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=93.69 Aligned_cols=184 Identities=16% Similarity=0.197 Sum_probs=96.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHH-CCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC---CCCChHHHHHHHHhCCC
Q 039743 7 LVLILDYGSQYTHLITRRIRS-LSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD---APAFPAGFLEWALSNGV 82 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~-~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~---~~~~~~~l~~~~~~~~i 82 (531)
+|+|+.|..-+...=...|++ +|++++++... +++ .++|||+|+||....++.. ...+. +.++.+.++++
T Consensus 253 ~i~v~~~~~a~~f~nl~~l~~~~g~~v~~~s~~---~~l--~~~d~lilpGg~~~~~~~~~~~~~~l~-~~i~~~~~~g~ 326 (488)
T PRK00784 253 RIAVIRLPRISNFTDFDPLRAEPGVDVRYVRPG---EPL--PDADLVILPGSKNTIADLAWLRESGWD-EAIRAHARRGG 326 (488)
T ss_pred EEEEEeCCCcCCccChHHHhhcCCCeEEEECCc---ccc--ccCCEEEECCccchHHHHHHHHHcCHH-HHHHHHHHcCC
Confidence 688886443222233466776 89988877542 233 3679999999987544321 11122 33455567799
Q ss_pred cEEEeeHHHHHHHHHc---CCEEe-ecCcccceeeeEEEecCCc-------c-ccCCCCCceEEEEeeccCccccCCCCc
Q 039743 83 YVLGICYGLQLMVQKL---DGVVK-VGEKQEYGRMEILVERSSG-------I-FGNKKVGHHQVVWMSHGDEAVVLPDGF 150 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~---GG~v~-~~~~~e~G~~~v~~~~~~~-------l-~~~~~~~~~~~v~~~H~~~v~~lp~g~ 150 (531)
|+||||.|||+|++.+ .|+.. .....-.|.-+.+..-... . +...... +.-+.+|.-... .+++.
T Consensus 327 pilg~C~G~~~L~~~~~~~~G~~~~~~~~~glG~l~~~~~~~~~~~~g~~~~~~~~~g~~--~~GhEfH~s~~~-~~~~~ 403 (488)
T PRK00784 327 PVLGICGGYQMLGRRIADPDGVEGAPGSVEGLGLLDVETVFEPEKTLRQVTGLLLGSGAP--VSGYEIHMGRTT-GPALA 403 (488)
T ss_pred eEEEECHHHHHHhhhccCCCCcccCCCCcCCCCceeeEEEecCceEEccEEEEEcCCCce--EEEEEecCcEee-CCCCC
Confidence 9999999999999977 33321 0001223433333221100 0 1111122 555566754322 22221
Q ss_pred EEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccc
Q 039743 151 EVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGW 204 (531)
Q Consensus 151 ~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w 204 (531)
..+.....+.-.++.+.+++++|.=.|-=. .. ..+.++|+ +.|+.++.|
T Consensus 404 ~~~~~~~~g~~~G~~~~~~nv~atY~H~~~---~n-p~~~~~~l-~~~~~~~g~ 452 (488)
T PRK00784 404 RPFLRLDDGRPDGAVSADGRVFGTYLHGLF---DN-DAFRRALL-NWLGARKGL 452 (488)
T ss_pred cCcEEecCCCcCceEecCCCEEEEeeeecc---CC-HHHHHHHH-HHHHHhcCC
Confidence 111110001125555434789988888622 22 45777777 777655544
|
|
| >KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.5e-06 Score=92.28 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=110.2
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChhc-cccCCCCEEEEcCCCC--CCCCCCCCCC-----hHH---H
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPH--SVHSPDAPAF-----PAG---F 73 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~-~~~~~~dgiIlsGGp~--s~~~~~~~~~-----~~~---l 73 (531)
+||+||-= |+.-...++.++..+|+++.-+..++-++. ..+.+|.||+++||.+ ++.+...-|. .+. -
T Consensus 1059 PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~Q 1138 (1320)
T KOG1907|consen 1059 PKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQ 1138 (1320)
T ss_pred CceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHH
Confidence 68999944 554466788899999998776554433322 4467899999999998 2333322221 122 2
Q ss_pred HH-HHHhCCCcEEEeeHHHHHHHHH--cCCEEeecC----------cccceeeeEEEecC-CccccCCCCCceEEEEeec
Q 039743 74 LE-WALSNGVYVLGICYGLQLMVQK--LDGVVKVGE----------KQEYGRMEILVERS-SGIFGNKKVGHHQVVWMSH 139 (531)
Q Consensus 74 ~~-~~~~~~iPvLGIC~G~Qlla~~--~GG~v~~~~----------~~e~G~~~v~~~~~-~~l~~~~~~~~~~~v~~~H 139 (531)
|+ .....+.=-||||.|+|+|+.. .|-.+...+ ..|--+..+.+..+ +-+++++.+. .+.+|..|
T Consensus 1139 F~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~~~~SIml~gM~gs-~LgvwvAH 1217 (1320)
T KOG1907|consen 1139 FEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIESNVSIMLSGMAGS-VLGVWVAH 1217 (1320)
T ss_pred HHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeCCCchhhhccccCC-ceeeEEEe
Confidence 22 2223567789999999999985 222222211 12233445666543 4566777654 48899999
Q ss_pred cCccccCC----------CCcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCC
Q 039743 140 GDEAVVLP----------DGFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 140 ~~~v~~lp----------~g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
+..-...+ +|+..+-. ++++ -|+++..++++.++++.|||+..
T Consensus 1218 GEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~yPfNpNGS~~gIAgicSpdGRhLAMMPHpER~~ 1286 (1320)
T KOG1907|consen 1218 GEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELYPFNPNGSPDGIAGICSPDGRHLAMMPHPERVF 1286 (1320)
T ss_pred cccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeecccCCCCCcccceeeeCCCCCeeeccCCchhee
Confidence 97643222 23333332 2233 48999999999999999999864
|
|
| >TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-06 Score=93.68 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=80.6
Q ss_pred hhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCC-CCChhHHHHHHHHHHHhCCCcEEEEECchH-
Q 039743 214 VKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNG-LLRYKERERVMDTFEKDLHLPVTCVDATDQ- 290 (531)
Q Consensus 214 ~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g-~~~~~e~~~~~~~la~~lgi~~~vvd~~~~- 290 (531)
.+.++..+..+.++.+.+|||+||+++++++++..+ .++.++++..+ ....+|...+.+ +|+.+|++|+++++++.
T Consensus 243 ~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~~~~E~~~A~~-vA~~lg~~~~~i~~~~~~ 321 (467)
T TIGR01536 243 EDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSPDFDESPYARK-VADHLGTEHHEVLFSVEE 321 (467)
T ss_pred HHHHHHHhccCCceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCCCCChHHHHHH-HHHHhCCcCeEEECCHHH
Confidence 344555555567899999999999999999988755 47888888765 233356556665 89999999999998743
Q ss_pred HHHhhc----CCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 291 FLSKLK----GVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 291 f~~~l~----~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
+.+.+. ...+|...... .....+.+.|++.| ...+++|+..|++.
T Consensus 322 ~~~~~~~~v~~~~~p~~~~~~---~~~~~l~~~a~~~G------~~vlltG~GaDElf 370 (467)
T TIGR01536 322 GLDALPEVIYHLEDPTTIRAS---IPLYLLSKLAREDG------VKVVLSGEGADELF 370 (467)
T ss_pred HHHHHHHHHHhhCCCCCCchH---HHHHHHHHHHHhcC------CEEEEecCcchhcc
Confidence 332222 12234321111 11224456677666 78999999888774
|
This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. |
| >KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-06 Score=86.99 Aligned_cols=167 Identities=22% Similarity=0.258 Sum_probs=105.0
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHH-----hCCcEEEEEEeCCCCCh-hHHHHHHHHHHHhCCCcEEEEECchHHH--
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKA-----IGDRLHCVFVDNGLLRY-KERERVMDTFEKDLHLPVTCVDATDQFL-- 292 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~-----~g~~v~~v~id~g~~~~-~e~~~~~~~la~~lgi~~~vvd~~~~f~-- 292 (531)
++.+++|.++-|||.||+|+|+.+... .|.++..+.+|.|.... .....+.+....++++|+.++...+.|.
T Consensus 48 ~~rge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~~ 127 (347)
T KOG2840|consen 48 FARGERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGEW 127 (347)
T ss_pred cCCCCccccccccchhHHHHHHHHHHhhhhcCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhccc
Confidence 555788999999999999999887432 46788889999887532 2333444446678899999998876553
Q ss_pred --Hhh-cCCC-CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccc
Q 039743 293 --SKL-KGVI-DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHN 365 (531)
Q Consensus 293 --~~l-~~~~-~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~ 365 (531)
+.+ ..+. .-++.|-+|+..+++.+.+-|..++ +..+++||+.||..|+.. ++|. +...+...+
T Consensus 128 tmd~i~~~i~~~~rn~ctfCgv~RrqaL~~ga~~l~------~~~~~tghnaDD~aetvl~n~lrgd----s~rl~R~~~ 197 (347)
T KOG2840|consen 128 TMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADVLG------AAELVTGHNADDWAETVLMNLLRGD----SARLERLTE 197 (347)
T ss_pred hHHHHHHHHhhhhhcCceeecHHHHHHHHhhccccc------hhhhhhcccchHHHHHHHHHHHHhH----HHHhhhccc
Confidence 000 0000 0223445666555566666666666 788999999999988631 1111 111111111
Q ss_pred cCCCCc-cc-ccceecccccCCHHHHHHHHHHcCC
Q 039743 366 VGGLPK-DM-KLKLIEPLKLLFKDEVRQLGRILNV 398 (531)
Q Consensus 366 ~~~l~~-~~-~~~ii~PL~~l~K~eVr~la~~lgl 398 (531)
+ ..+. .+ .+.-..||++-++.||.-++...-|
T Consensus 198 ~-~t~~~e~~~~~r~kplk~~~~keivLya~~~~L 231 (347)
T KOG2840|consen 198 I-TTPSLEMGIIPRLKPLKYASEKEIVLYASLSKL 231 (347)
T ss_pred c-ccCccccCccccccccccchhhehhhHHHHHHH
Confidence 1 0110 11 2446789999999999888766544
|
|
| >TIGR00289 conserved hypothetical protein TIGR00289 | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.7e-05 Score=75.18 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=91.0
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCC-----CC-hhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGL-----LR-YKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVI 299 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~-----~~-~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~ 299 (531)
|+++.+|||+||+++++.+.+. .++.+++.-.+. +. ....+.+ +..|+.+|||++.+..+..
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~--~~V~~L~~~~~~~~~s~~~h~~~~~~~-~~qA~algiPl~~~~~~~~--------- 69 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE--HEVISLVGVFSENEESYMFHSPNLHLT-DLVAEAVGIPLIKLYTSGE--------- 69 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc--CeeEEEEEEcCCCCCccccccCCHHHH-HHHHHHcCCCeEEEEcCCc---------
Confidence 5889999999999999999887 577776653322 21 1223333 4478999999988765421
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
.+ +.+ +-+.+.+++.| .+.++.|.+..+..- .- +..+....+++.+.
T Consensus 70 -~e-------~~~-~~l~~~l~~~g------v~~vv~GdI~s~~qr------------~~------~e~vc~~~gl~~~~ 116 (222)
T TIGR00289 70 -EE-------KEV-EDLAGQLGELD------VEALCIGAIESNYQK------------SR------IDKVCRELGLKSIA 116 (222)
T ss_pred -hh-------HHH-HHHHHHHHHcC------CCEEEECccccHHHH------------HH------HHHHHHHcCCEEec
Confidence 01 111 22223334445 889999987643210 00 11122234667899
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCC-CcchH
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDV-TEGNS 426 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~v-t~~~l 426 (531)
||=.....++.++. ..|+..-++.-. ..+|.-.++|.. |++-+
T Consensus 117 PLW~~d~~~l~e~i-~~Gf~aiIv~v~---~~gL~~~~LGr~id~~~~ 160 (222)
T TIGR00289 117 PLWHADPEKLMYEV-AEKFEVIIVSVS---AMGLDESWLGRRIDKECI 160 (222)
T ss_pred cccCCCHHHHHHHH-HcCCeEEEEEEc---cCCCChHHcCCccCHHHH
Confidence 99888888877664 688764433322 234666677653 44444
|
Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group. |
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0001 Score=79.26 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=58.3
Q ss_pred EEEEE-eCCCCc-HHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHHHHhCCC
Q 039743 7 LVLIL-DYGSQY-THLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEWALSNGV 82 (531)
Q Consensus 7 ~I~Il-D~G~~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~~~~~~i 82 (531)
+|+|+ |-=..| -..-.+.|++.|+++..++...+ +++ .++|+|||+||....++.. ......+.++.+.++++
T Consensus 247 ~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~~-~~l--~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~ 323 (451)
T PRK01077 247 RIAVARDAAFNFYYPENLELLRAAGAELVFFSPLAD-EAL--PDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGK 323 (451)
T ss_pred eEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcCC-CCC--CCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCC
Confidence 78888 322222 12245778899998877653211 223 3789999999976433221 11112455666677899
Q ss_pred cEEEeeHHHHHHHHHc
Q 039743 83 YVLGICYGLQLMVQKL 98 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~ 98 (531)
||+|||-|+|+|++.+
T Consensus 324 ~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 324 PIYAECGGLMYLGESL 339 (451)
T ss_pred CEEEEcHHHHHHHhhh
Confidence 9999999999999976
|
|
| >PLN02549 asparagine synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.9e-06 Score=89.60 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=77.2
Q ss_pred hhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC---------CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc
Q 039743 211 DEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG---------DRLHCVFVDNGLLRYKERERVMDTFEKDLHLP 281 (531)
Q Consensus 211 ~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g---------~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~ 281 (531)
+.+.+.+++.+..+..+.+.||||+||+++|+++++.++ ..+..++ .|+....|.+.+.+ +|+.+|.+
T Consensus 212 ~~L~~aV~~rl~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~D~~~Ar~-vA~~lg~~ 288 (578)
T PLN02549 212 EAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFC--VGLEGSPDLKAARE-VADYLGTV 288 (578)
T ss_pred HHHHHHHHHHhccCCceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEe--cCCCCCCHHHHHHH-HHHHhCCC
Confidence 334455666665567899999999999999999988653 2444444 45554567777765 89999999
Q ss_pred EEEEECch-HHHHhhcCC------CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 282 VTCVDATD-QFLSKLKGV------IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 282 ~~vvd~~~-~f~~~l~~~------~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
|+.+.++. .+.+.+..+ .+|..-+..+ .++ .+.+.+++.| ...+++|...|++.
T Consensus 289 h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~s~--p~y-ll~r~a~~~g------vkVvLsGeGaDElF 349 (578)
T PLN02549 289 HHEFHFTVQEGIDAIEDVIYHLETYDVTTIRAST--PMF-LMSRKIKSLG------VKMVLSGEGSDEIF 349 (578)
T ss_pred CeEEEEChHHHHHHHHHHHHHhcCCCCccchhHH--HHH-HHHHHHHhcC------CEEEEecCchHhhh
Confidence 99887763 233322211 1222111111 112 2344555555 78899999888874
|
|
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0001 Score=79.19 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=94.4
Q ss_pred EEEEE-e--CCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC---CCChHHHHHHHHhC
Q 039743 7 LVLIL-D--YGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA---PAFPAGFLEWALSN 80 (531)
Q Consensus 7 ~I~Il-D--~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~---~~~~~~l~~~~~~~ 80 (531)
+|+|+ | |.-.| +.-.+.|++.|+++..+....+ +++ .++|+|+|+||.+..++... ..+ .+-++.+.++
T Consensus 246 ~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-~~l--~~~d~l~ipGG~~~~~~~~l~~~~~~-~~~i~~~~~~ 320 (449)
T TIGR00379 246 RIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-TEL--PDVDAVYIGGGFPELFAEELSQNQAL-RDSIKTFIHQ 320 (449)
T ss_pred EEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-CCC--CCCCEEEeCCcHHHHHHHHHHhhhHH-HHHHHHHHHc
Confidence 68888 3 22222 3456778889998877644211 123 36799999999875443321 112 2344555677
Q ss_pred CCcEEEeeHHHHHHHHHc---CCEEeec-----------Cc-ccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc
Q 039743 81 GVYVLGICYGLQLMVQKL---DGVVKVG-----------EK-QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV 145 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~---GG~v~~~-----------~~-~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~ 145 (531)
|.||+|+|-|+|+|++.+ .|++ ++ +. ..+|....+...++++.. .... +.-+-+|.-....
T Consensus 321 G~pv~g~CgG~~~L~~~i~~~~g~~-~~~Gllp~~t~~~~~~~~~gy~~~~~~~~~~~~~-~g~~--~~GhEfH~~~~~~ 396 (449)
T TIGR00379 321 GLPIYGECGGLMYLSQSLDNFEGQI-FMVGMLPTAATMTGRVQGLGYVQAEVVNDCLILW-QGEK--FRGHEFHYSRMTK 396 (449)
T ss_pred CCCEEEEcHHHHHHHhhhcCCCCce-eceeeeeeEEEEcCCcccccceEEEEecCccccC-CCCE--EEEEecCCccCcC
Confidence 999999999999999976 4443 21 11 123443333333333221 1222 5666667543221
Q ss_pred CCC-C--cEEEEEe-CCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 146 LPD-G--FEVVARS-QQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 146 lp~-g--~~vla~s-~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
.+. . +++.... .+....++.. ++++|...|=-+... ..+.++|+ +.|
T Consensus 397 ~~~~~~~~~~~~g~g~~~~~dG~~~--~nv~gsY~H~~~~~n---p~~~~~~l-~~~ 447 (449)
T TIGR00379 397 LPNAQFAYRVERGRGIIDQLDGICV--GSVLASYLHLHAGSV---PKFAAAFV-AFA 447 (449)
T ss_pred CCCcceEEEeccCCCCCCceeEEEe--CCEEEEeeeeeCCcC---HHHHHHHH-HHh
Confidence 111 1 1111100 0112256653 679999999655322 24666665 444
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >PTZ00077 asparagine synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.3e-05 Score=86.53 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=77.6
Q ss_pred hhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC-----------CcEEEEEEeCCCCChhHHHHHHHHHHHhC
Q 039743 210 LDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG-----------DRLHCVFVDNGLLRYKERERVMDTFEKDL 278 (531)
Q Consensus 210 ~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g-----------~~v~~v~id~g~~~~~e~~~~~~~la~~l 278 (531)
.+.+.+.++..+..+.++.+.||||+||+++|+++++..+ .++.+.++ |+-...|...+.+ +|+.+
T Consensus 223 r~~L~~AV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsi--g~~~~~D~~~Ar~-vA~~l 299 (586)
T PTZ00077 223 REALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCI--GLEGSPDLKAARK-VAEYL 299 (586)
T ss_pred HHHHHHHHHHHhcCCCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEc--CCCCCchHHHHHH-HHHHh
Confidence 3444555666666567899999999999999999988654 35666665 4433467777766 89999
Q ss_pred CCcEEEEECch-HHHHhhcCC----CCc--ccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 279 HLPVTCVDATD-QFLSKLKGV----IDP--ETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 279 gi~~~vvd~~~-~f~~~l~~~----~~p--~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
|.+|+.+.++. .+.+.+..+ ..| ..-+. .-.++ .+.+.+++.| ...+++|...|.+.
T Consensus 300 g~~h~~i~~~~~e~~~~l~~~i~~le~~~~~~~~~--~~p~y-ll~r~a~~~g------vkVvLsGeGaDElF 363 (586)
T PTZ00077 300 GTEHHEFTFTVEEGIDALPDVIYHTETYDVTTIRA--STPMY-LLSRRIKALG------IKMVLSGEGSDELF 363 (586)
T ss_pred CCcCcEEEECHHHHHHHHHHHHHHhcCCCCCCcch--HHHHH-HHHHHHHhcC------CeEEEecCchhhhc
Confidence 99998887753 223332221 112 11111 11222 3444566555 67888888777663
|
|
| >PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea [] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.4e-05 Score=70.88 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=38.5
Q ss_pred cCCCCEEEEcCCCCCCCCCCC---CCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcC
Q 039743 46 AKNPRVVILSGGPHSVHSPDA---PAFPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 46 ~~~~dgiIlsGGp~s~~~~~~---~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~G 99 (531)
..++|+|+|+||....++... ..+. +-++.+.+++.||+|+|-|+|+|.+.+-
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~-~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLK-EAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHH-HHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 357899999999875544321 1222 3445566779999999999999999764
|
Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process |
| >cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.4e-05 Score=63.60 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=53.2
Q ss_pred HHHHHHHHHCCCEEEEEeCCCChhc--cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHH
Q 039743 19 HLITRRIRSLSILSLCLSGTCSLDD--ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLM 94 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~~~--~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qll 94 (531)
......++.+++.+.+++....... ....++|+++++||+.............+.++...+++.|++|+|.|+|++
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 5678899999999999987654211 124678999999998754332100112344555666789999999999999
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende |
| >PRK09431 asnB asparagine synthetase B; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.1e-05 Score=82.83 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=75.6
Q ss_pred hhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCC-------------cEEEEEEeCCCCChhHHHHHHHHHHHh
Q 039743 211 DEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGD-------------RLHCVFVDNGLLRYKERERVMDTFEKD 277 (531)
Q Consensus 211 ~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~-------------~v~~v~id~g~~~~~e~~~~~~~la~~ 277 (531)
+.+.+.++..+..+.++.+.||||+||+++|+++++..+. ++.++++.. -...|.+.+.+ +|+.
T Consensus 214 ~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~--~~~~D~~~A~~-vA~~ 290 (554)
T PRK09431 214 DALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGL--EGSPDLKAARE-VADH 290 (554)
T ss_pred HHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeC--CCCChHHHHHH-HHHH
Confidence 4445556666665778999999999999999999886442 466666643 22457777766 8999
Q ss_pred CCCcEEEEECch-HHHHhhcCC------CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 278 LHLPVTCVDATD-QFLSKLKGV------IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 278 lgi~~~vvd~~~-~f~~~l~~~------~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
+|.+|+.+.++. .+.+.+..+ .+|..-+..+ .++- +.+.+++.+ ...+++|.-.|.+.
T Consensus 291 lg~~h~~v~~t~~e~~~~l~~vi~~le~~dp~~~~~~~--p~yl-l~~~~~~~g------vkvvLsGeGaDElF 355 (554)
T PRK09431 291 LGTVHHEIHFTVQEGLDALRDVIYHLETYDVTTIRAST--PMYL-MARKIKAMG------IKMVLSGEGADELF 355 (554)
T ss_pred hCCccEEEEeCHHHHHHHHHHHHHHHhccCCccchhHH--HHHH-HHHHHHHcC------CEEEEecCchhhhh
Confidence 999999998863 333333221 1333222111 1222 333333333 67778887666553
|
|
| >cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.7e-05 Score=61.09 Aligned_cols=76 Identities=24% Similarity=0.243 Sum_probs=52.1
Q ss_pred HHHHHHHHHCCCEEEEEeCCCChhc--cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHH
Q 039743 19 HLITRRIRSLSILSLCLSGTCSLDD--ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLM 94 (531)
Q Consensus 19 ~~i~r~l~~~G~~~~v~~~~~~~~~--~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qll 94 (531)
..+.+.+++.+..+.+++....... ....++|++|++||+..........-..+.+....+++.|++|+|.|+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 4678899999999999887655321 225679999999999865433200111233444455689999999999864
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin |
| >TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 | Back alignment and domain information |
|---|
Probab=97.85 E-value=4e-05 Score=86.03 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=57.6
Q ss_pred hhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHH
Q 039743 213 EVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFL 292 (531)
Q Consensus 213 ~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~ 292 (531)
+.+.++..+..+..|.+.+|||+||+++++++++..+..+.++++.......+|...+.+ +|+.+|.+|+++.++....
T Consensus 247 l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~~~~~dE~~~A~~-vA~~~g~~h~~~~~~~~~~ 325 (628)
T TIGR03108 247 LREAVRSRMVADVPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDESAYARQ-VAERYGTNHRVETVDPDDF 325 (628)
T ss_pred HHHHHHHHHhcCCcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecCCCCCChHHHHHH-HHHHhCCCCeEEecCHHHH
Confidence 334444445446689999999999999999988764456777776543333467777765 8999999999998875443
|
The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins. |
| >TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00024 Score=67.42 Aligned_cols=151 Identities=13% Similarity=0.086 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH-HHH--hhcCCCC-cccccchhh
Q 039743 234 GVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ-FLS--KLKGVID-PETKRKIIG 309 (531)
Q Consensus 234 GvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~-f~~--~l~~~~~-p~~kr~~~~ 309 (531)
|+||+|+++|++++ ..++.++|+|+|...++..+.+. .+++++|++++++..... +.+ ...|... .......||
T Consensus 2 ~~~s~Vll~L~~~~-~~~~~vifvDTg~~FpET~~~~d-~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~cc 79 (191)
T TIGR02055 2 GAEDVVLVDLAAKV-RPDVKVFFLDTGRLFKETYETID-QVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSVPHECC 79 (191)
T ss_pred ChHHHHHHHHHHhc-CCCCcEEEecCCCCCHHHHHHHH-HHHHHhCCceEEEcCCcccHHHHHHHcCcccccccchHHHH
Confidence 78999999999998 45688999999998876555544 488999999988865321 111 1122211 011022344
Q ss_pred HHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHH
Q 039743 310 KEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDE 388 (531)
Q Consensus 310 ~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~e 388 (531)
..+. +-+.+..+ + .+..++|.-.++-.. +. ...+....+. ...--+.||.+++..|
T Consensus 80 ~~~K~~Pl~~~l~--~------~~~~i~G~Rr~Es~~-----R~----~~~~~~~~~~------~~~~~~~Pi~~Wt~~d 136 (191)
T TIGR02055 80 GIRKVEPLKRALA--G------VSAWITGLRRDQSPT-----RA----QAPFLEIDEA------FGLVKINPLADWTSED 136 (191)
T ss_pred HHHhHHHHHHHHh--c------CCEEEEEeccccCch-----hc----CCceeeecCC------CCeEEEEecccCCHHH
Confidence 3321 12222222 1 456778875554222 11 0001110000 1123579999999999
Q ss_pred HHHHHHHcCCCccccccCCCC
Q 039743 389 VRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 389 Vr~la~~lglp~~~~~~~P~~ 409 (531)
|.++.++.|||..-++.+=|+
T Consensus 137 Vw~Yi~~~~lp~npLY~~Gy~ 157 (191)
T TIGR02055 137 VWEYIADNELPYNPLHDRGYP 157 (191)
T ss_pred HHHHHHHcCCCCChHHHcCCC
Confidence 999999999998666665555
|
This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster. |
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00042 Score=73.67 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=94.1
Q ss_pred EEEEE---eCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC--CCChHHHHHHHHhCC
Q 039743 7 LVLIL---DYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA--PAFPAGFLEWALSNG 81 (531)
Q Consensus 7 ~I~Il---D~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~--~~~~~~l~~~~~~~~ 81 (531)
+|+|- -|.-.|..+ .+.|+++ ++.+.+..- ..+.+ .++|+|+|+||....++... ...... ++.+.++|
T Consensus 235 ~iavA~D~AF~FyY~en-l~~L~~~-aelv~fSPl-~~~~l--p~~D~l~lpGG~~e~~~~~L~~n~~~~~-i~~~~~~G 308 (433)
T PRK13896 235 TVAVARDAAFCFRYPAT-IERLRER-ADVVTFSPV-AGDPL--PDCDGVYLPGGYPELHADALADSPALDE-LADRAADG 308 (433)
T ss_pred eEEEEEcCccceeCHHH-HHHHHhc-CcEEEEcCC-CCCCC--CCCCEEEeCCCchhhHHHHHHhCCcHHH-HHHHHHCC
Confidence 68887 344445444 3577777 544443221 11233 36899999999875544311 112233 44455779
Q ss_pred CcEEEeeHHHHHHHHHc---CCEEeec-----------C-cccceeeeEEEecCCccccCCCCCceEEEEeeccCccccC
Q 039743 82 VYVLGICYGLQLMVQKL---DGVVKVG-----------E-KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVL 146 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~---GG~v~~~-----------~-~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~l 146 (531)
.||+|+|-|+|+|++.+ .|+..++ + ...+|...++...++++.. .... ++-+-.|.-... +
T Consensus 309 ~pi~aeCGG~q~L~~~i~d~eG~~~~m~Gllp~~t~m~~r~~~lGy~~~~~~~~~~~~~-~G~~--i~GhEfHys~~~-~ 384 (433)
T PRK13896 309 LPVLGECGGLMALAESLTTTDGDTHEMAGVLPADVTMQDRYQALDHVELRATDDTLTAG-AGET--LRGHEFHYSSAT-V 384 (433)
T ss_pred CcEEEEehHHHHhhccccCCCCCEecccceeeEEEEEccceeEEEeEEEEEccCccccC-CCCe--EEEEeeeCeEEE-C
Confidence 99999999999999976 2332221 1 1245555555544444432 1223 666677755433 3
Q ss_pred CCCcEEEEEeCCC-----cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 147 PDGFEVVARSQQG-----AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 147 p~g~~vla~s~~~-----~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
+++-..+.....+ ...++.. ++++|.-.|-=+... .+++|+
T Consensus 385 ~~~~~~~~~~~~g~g~~~~~dG~~~--~nv~asY~H~hf~~~-----~~~~f~ 430 (433)
T PRK13896 385 GSDARFAFDVERGDGIDGEHDGLTE--YRTLGTYAHVHPESG-----AFDRFL 430 (433)
T ss_pred CCCCceEEEeccCCCCCCcccEEEE--CCEEEEehhhcCCch-----HHHHHH
Confidence 3221212211111 1256664 679999998755432 677775
|
|
| >TIGR00313 cobQ cobyric acid synthase CobQ | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.7e-05 Score=79.86 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=50.3
Q ss_pred EEEEEeC--CCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC---CCCChHHHHHHHHhCC
Q 039743 7 LVLILDY--GSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD---APAFPAGFLEWALSNG 81 (531)
Q Consensus 7 ~I~IlD~--G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~---~~~~~~~l~~~~~~~~ 81 (531)
+|+|+.+ =+.|+ =.+.|+..- .+...| ..+++ .++|+|+|+||....++.. ...+... ++.+.++|
T Consensus 249 ~Iav~~~~~~~nf~--~~~~L~~~~-~~~f~~---~~~~l--~~~d~lilpGg~~~~~~~~~l~~~~~~~~-i~~~~~~G 319 (475)
T TIGR00313 249 RIGVVRLPRISNFT--DFEPLRYEA-FVKFLD---LDDSL--TGCDAVIIPGSKSTIADLYALKQSGFAEE-ILDFAKEG 319 (475)
T ss_pred EEEEEcCCcccCcc--ChHHHhhCC-CeEEeC---Ccccc--ccCCEEEECCcchHHHHHHHHHhcChHHH-HHHHHHcC
Confidence 6888853 23333 345565541 222222 22334 3789999999986443321 1122333 44455679
Q ss_pred CcEEEeeHHHHHHHHHc
Q 039743 82 VYVLGICYGLQLMVQKL 98 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~ 98 (531)
.||+|||-|||+|++.+
T Consensus 320 ~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 320 GIVIGICGGYQMLGKEL 336 (475)
T ss_pred CcEEEEcHHHHHhhhhh
Confidence 99999999999999965
|
|
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00078 Score=71.96 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=95.3
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHH---HhhcCCCC-
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFL---SKLKGVID- 300 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~---~~l~~~~~- 300 (531)
++++++.|||.|| |+++++.+. +..+-.+|+|+|...++-.+.+.+ ++++||++++++.-+..-. ....|...
T Consensus 116 ~~iavasSG~eds-vLlhl~~~~-~~~ipV~flDTG~lFpETy~~~d~-v~~~ygl~l~~~~p~~~~~~~~~~~~G~~~~ 192 (463)
T TIGR00424 116 NDIAIAFSGAEDV-ALIEYAHLT-GRPFRVFSLDTGRLNPETYRFFDA-VEKQYGIRIEYMFPDAVEVQALVRSKGLFSF 192 (463)
T ss_pred CCEEEEeccHHHH-HHHHHHHHh-CCCCcEEEecCCCCCHHHHHHHHH-HHHHhCCceEEECCCcchHHHHHHhcCcccC
Confidence 4799999988886 567788776 777889999999998766555544 8899999998773321101 11223211
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccc-cCCCCCCCCCcccccccccccCCCCcc-ccccee
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIE-SCPPPGTGRTHSHTIKSHHNVGGLPKD-MKLKLI 378 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~e-s~~~~g~g~~~~~~ikt~~~~~~l~~~-~~~~ii 378 (531)
.+..+..||..+. .+-+.+.+. +.+..++|--. |... + |. ....+.......+.... -..--+
T Consensus 193 ~~~~~~~CC~irK--VePL~raL~-----~~~awitG~Rr-~Qs~~t----Ra---~~~~ve~d~~~~~~~~~~~~~iKv 257 (463)
T TIGR00424 193 YEDGHQECCRVRK--VRPLRRALK-----GLKAWITGQRK-DQSPGT----RS---EIPVVQVDPVFEGLDGGVGSLVKW 257 (463)
T ss_pred CcCChHHHhhHHh--HHHHHHHHH-----hCCcEEeeecc-ccCccc----cc---cCCcccccccccccccCCCceEEE
Confidence 1112234554321 122222222 14567888633 3221 1 11 00011100000000000 012367
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.||.+++..||..|.++.+||..-++.+=|+
T Consensus 258 nPLa~Wt~~dVw~Yi~~~~LP~npL~~~GY~ 288 (463)
T TIGR00424 258 NPVANVEGKDVWNFLRTMDVPVNTLHAQGYV 288 (463)
T ss_pred eecccCCHHHHHHHHHHcCCCCCchhhcCCC
Confidence 9999999999999999999998777777666
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=70.87 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=95.4
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHH---HHhhcCCCC-
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQF---LSKLKGVID- 300 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f---~~~l~~~~~- 300 (531)
++++++.|||.|| |+++++++. +..+-.+|+|+|.+.++-.+.+.+ +.++||++++++--+..- .....|...
T Consensus 111 ~~ia~~~SG~ed~-vll~l~~~~-~~~ipV~flDTG~lfpETy~~~d~-v~~~ygl~i~~~~P~~~~~~~~~~~~g~~~~ 187 (457)
T PLN02309 111 NDIAIAFSGAEDV-ALIEYAHLT-GRPFRVFSLDTGRLNPETYRLFDA-VEKHYGIRIEYMFPDAVEVQALVRNKGLFSF 187 (457)
T ss_pred CCEEEEecchHHH-HHHHHHHHh-CCCCcEEEecCCCCCHHHHHHHHH-HHHHhCCceEEECCCcchHHHHHHhcCcccc
Confidence 5799999977776 566777775 777889999999998866666554 889999999887322110 111223211
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc-ccccceec
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK-DMKLKLIE 379 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~-~~~~~ii~ 379 (531)
.+..+..||+.+ -.+-+.+.+. +.+..++|--.++-..+ |. ....+.......+... .-.+--+.
T Consensus 188 ~~~~~~~Cc~ir--KVePL~raL~-----~~~awitG~Rr~Qs~~~----Ra---~l~~ve~d~~~~~~~~~~~~~lKvn 253 (457)
T PLN02309 188 YEDGHQECCRVR--KVRPLRRALK-----GLRAWITGQRKDQSPGT----RA---EVPVVQVDPVFEGLDGGPGSLVKWN 253 (457)
T ss_pred ccCChHHhhhhH--hHHHHHHHHh-----hCCEEEEeeccccCccc----cc---cCCeeeecccccccccCCCCeeEEc
Confidence 111223444432 1222223222 14677788633331101 11 0011111000000000 00122589
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
||.+++..||.+|.++.+||..-++.+=|+
T Consensus 254 Pl~~Wt~~dVw~Yi~~~~lP~npL~~~GY~ 283 (457)
T PLN02309 254 PLANVTGNEVWNFLRTMDVPVNSLHAQGYV 283 (457)
T ss_pred ccccCCHHHHHHHHHHcCCCCCcchhcCCC
Confidence 999999999999999999998777777666
|
|
| >TIGR03104 trio_amidotrans asparagine synthase family amidotransferase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00025 Score=78.87 Aligned_cols=123 Identities=17% Similarity=0.169 Sum_probs=75.6
Q ss_pred hhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC---ChhHHHHHHHHHHHhCCCcEEEEEC
Q 039743 211 DEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL---RYKERERVMDTFEKDLHLPVTCVDA 287 (531)
Q Consensus 211 ~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~---~~~e~~~~~~~la~~lgi~~~vvd~ 287 (531)
+.+.+.++..+..+.+|.+.||||+||+++++++++.-+..+.++++...-. ..+|.+.+.+ +|+.+|.+|+.+.+
T Consensus 247 ~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~~~~~dE~~~A~~-vA~~~g~~h~~i~~ 325 (589)
T TIGR03104 247 EALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEFEYSDI-IAERFHTRHHKIRI 325 (589)
T ss_pred HHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCCCCCCChHHHHHH-HHHHhCCcCeEEEc
Confidence 3344555555665778999999999999999999876345677777643221 2367777766 89999999999887
Q ss_pred ch-HHHHhhc----CCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 288 TD-QFLSKLK----GVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 288 ~~-~f~~~l~----~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
+. .+.+.+. ....|-..-..+ .++ .+.+.+++ + ...+++|.-.|.+.
T Consensus 326 ~~~~~~~~l~~~v~~~~~P~~~~~~~--~~~-~l~~~a~~-~------~kV~LsGeGaDElF 377 (589)
T TIGR03104 326 PNHRVLPALPEAVAAMSEPMVSHDCV--AFY-LLSEEVSK-H------VKVVQSGQGADEVF 377 (589)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCchHH--HHH-HHHHHHhC-C------CeEEeecCchHhcc
Confidence 63 2333321 122332111111 111 23333432 2 68888998776653
|
Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases. |
| >PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00069 Score=65.49 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=60.3
Q ss_pred CEEEEEeC------CCCcHHH--HHHHHHHCCCEEEEEeCCC---------------------------------Chhcc
Q 039743 6 ELVLILDY------GSQYTHL--ITRRIRSLSILSLCLSGTC---------------------------------SLDDI 44 (531)
Q Consensus 6 ~~I~IlD~------G~~~~~~--i~r~l~~~G~~~~v~~~~~---------------------------------~~~~~ 44 (531)
++|+|+=- |..-... -..+|+++|+.+.+..... +++++
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v 81 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEA 81 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHC
Confidence 46777732 2222222 3489999999988765321 11222
Q ss_pred ccCCCCEEEEcCCCCCC---CC----CCCCCC---hHHHHHHHHhCCCcEEEeeHHHHHHHHHc
Q 039743 45 TAKNPRVVILSGGPHSV---HS----PDAPAF---PAGFLEWALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 45 ~~~~~dgiIlsGGp~s~---~~----~~~~~~---~~~l~~~~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
...+||+|+||||.+.. ++ ++.... ..++++.+.++++||.+||.|-++|+.++
T Consensus 82 ~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 82 DAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred ChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 24579999999996532 11 111111 23677788889999999999999999876
|
|
| >TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0011 Score=64.06 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=88.7
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEE-E-eCC---CCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVF-V-DNG---LLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~-i-d~g---~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
|+++.+|||+||+.+++.+.+. .++.++. + +.+ .+...--.+..+..|+.+|||+..+..+..
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~--~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~---------- 69 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE--HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT---------- 69 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh--CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCC----------
Confidence 5788999999999999999887 5666543 2 221 111111123334478899999877543210
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEP 380 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~P 380 (531)
.+ ...+-+.+..++.| .+.++.|.+..+-.-. - +..+....+++.+.|
T Consensus 70 ~e--------~~~e~l~~~l~~~g------v~~vv~GdI~s~~qr~------------~------~e~v~~~lgl~~~~P 117 (223)
T TIGR00290 70 EE--------DEVEELKGILHTLD------VEAVVFGAIYSEYQKT------------R------IERVCRELGLKSFAP 117 (223)
T ss_pred cc--------HHHHHHHHHHHHcC------CCEEEECCcccHHHHH------------H------HHHHHHhcCCEEecc
Confidence 11 11123334444445 8999999876532110 0 111223346678999
Q ss_pred cccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCC-CCcchH
Q 039743 381 LKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD-VTEGNS 426 (531)
Q Consensus 381 L~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~-vt~~~l 426 (531)
|=.....++-+-.-..|+..-++.-. ..+|--.++|. +|++-+
T Consensus 118 LW~~~~~~ll~e~i~~G~~aiIv~v~---a~gL~~~~LGr~i~~e~i 161 (223)
T TIGR00290 118 LWHRDPEKLMEEFVEEKFEARIIAVA---AEGLDESWLGRRIDRKMI 161 (223)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEEEe---cCCCChHHcCCcccHHHH
Confidence 99888887776666888875443322 22355555654 344433
|
Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein. |
| >cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00062 Score=63.83 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 48 NPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 48 ~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+|+|+++||++....... .....+++.+.++++||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~-~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLD-EKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccC-HHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 5799999999753211111 113466777778899999999999999985
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=62.96 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=91.7
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEe---CC--CCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVD---NG--LLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id---~g--~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
|+++.+|||+||..+++.+.+. |.+|.++..- ++ +|....--+..+.+|+.+|+++...+.+-..
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~-G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~--------- 71 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE-GHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEE--------- 71 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc-CCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccc---------
Confidence 6889999999999999999887 8877765432 22 2322222233445788999998887765310
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEP 380 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~P 380 (531)
+ .-.+-+.+..+.++ .+.++.|.++.+--- ..+..+.....++.+.|
T Consensus 72 -e--------~eve~L~~~l~~l~------~d~iv~GaI~s~yqk------------------~rve~lc~~lGl~~~~P 118 (223)
T COG2102 72 -E--------REVEELKEALRRLK------VDGIVAGAIASEYQK------------------ERVERLCEELGLKVYAP 118 (223)
T ss_pred -h--------hhHHHHHHHHHhCc------ccEEEEchhhhHHHH------------------HHHHHHHHHhCCEEeec
Confidence 0 01122333344444 788999987654210 01112334456688999
Q ss_pred cccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCC-CCcchH
Q 039743 381 LKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD-VTEGNS 426 (531)
Q Consensus 381 L~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~-vt~~~l 426 (531)
|=...-.++-.---..|+..-|+.- +..+|--.++|. ++++.+
T Consensus 119 LWg~d~~ell~e~~~~Gf~~~Iv~V---sa~gL~~~~lGr~i~~~~~ 162 (223)
T COG2102 119 LWGRDPEELLEEMVEAGFEAIIVAV---SAEGLDESWLGRRIDREFL 162 (223)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEEE---eccCCChHHhCCccCHHHH
Confidence 9888877777666777876533322 223343344443 344444
|
|
| >COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00074 Score=74.14 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=72.1
Q ss_pred hhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEE-EEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECch-HHHHh
Q 039743 217 IKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHC-VFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATD-QFLSK 294 (531)
Q Consensus 217 i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~-v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~-~f~~~ 294 (531)
++..+-.+..+.+.+|||+|||++|+++++....+... .++........|.+.+.+ .|+.||.+|+.+-++. .+.+.
T Consensus 223 V~~r~~advpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~D~~~a~~-~A~~lg~~h~~~~~~~~e~~~~ 301 (542)
T COG0367 223 VKRRLVADVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPDAKYARA-VAKFLGTPHHEIILTNEELLNA 301 (542)
T ss_pred HHHHhccCCcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCCCchHHHHHH-HHHHhCCCcEEEeecHHHHHHH
Confidence 33334336789999999999999999999986655553 444333322347777665 8999999998887763 33333
Q ss_pred hcC----CCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 295 LKG----VIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 295 l~~----~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
++. +..|.. -..+-.++- ..+.+++.+ ...+..|.-.|.+.
T Consensus 302 ~~~vv~~~~~p~~--~~~~~ply~-~~~~a~~~g------~kVvLSGeGADElF 346 (542)
T COG0367 302 LPEVVKALDTPGG--MAASIPLYL-LSRKARAEG------EKVVLSGEGADELF 346 (542)
T ss_pred HHHHHhhcCCCCc--ccchhHHHH-HHHhhhhcC------cEEeecCccHHHHh
Confidence 322 223332 122223333 345566655 56666777666543
|
|
| >cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0003 Score=67.86 Aligned_cols=92 Identities=21% Similarity=0.164 Sum_probs=60.2
Q ss_pred CEEEEEeCCC----CcHHHHHHHHHHC-CCEEEEEeCCCChhcc-ccCCCCEEEEcCCCCCCCCCC-CCCChHHHHHHHH
Q 039743 6 ELVLILDYGS----QYTHLITRRIRSL-SILSLCLSGTCSLDDI-TAKNPRVVILSGGPHSVHSPD-APAFPAGFLEWAL 78 (531)
Q Consensus 6 ~~I~IlD~G~----~~~~~i~r~l~~~-G~~~~v~~~~~~~~~~-~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l~~~~~ 78 (531)
.+|++|-..+ .|.+++.++++++ |+.++.+....+.+.. ...+.|+|+|+||-....-.. ...-..++++.+.
T Consensus 32 ~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~ 111 (212)
T cd03146 32 PKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKAAL 111 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHHHH
Confidence 5799996654 3567788999999 9988876532111101 146789999999833110000 0011234566666
Q ss_pred hCCCcEEEeeHHHHHHHHH
Q 039743 79 SNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 79 ~~~iPvLGIC~G~Qlla~~ 97 (531)
+++.|++|+|.|+|++...
T Consensus 112 ~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 112 ERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HCCCEEEEECHhHHhhCCC
Confidence 7899999999999999874
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption. |
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.001 Score=70.49 Aligned_cols=84 Identities=23% Similarity=0.404 Sum_probs=58.1
Q ss_pred EEEEE--eCCCCcHHHHHHHHHHC-CCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCC---CCCCChHHHHHHHHhC
Q 039743 7 LVLIL--DYGSQYTHLITRRIRSL-SILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSP---DAPAFPAGFLEWALSN 80 (531)
Q Consensus 7 ~I~Il--D~G~~~~~~i~r~l~~~-G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~---~~~~~~~~l~~~~~~~ 80 (531)
+|+|+ ..++.|+.. ..|+.. ++++.+++...++ .++|.+||||.-++..|- ...+++.++.+++..
T Consensus 253 ~Iav~~lp~isNFtD~--dpL~~~~~v~v~~v~~~~~l-----~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~- 324 (486)
T COG1492 253 RIAVIRLPRISNFTDF--DPLRAEPDVRVRFVKPGSDL-----RDADLVILPGSKNTIADLKILREGGMDEKILEYARK- 324 (486)
T ss_pred EEEEecCCCccccccc--hhhhcCCCeEEEEeccCCCC-----CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhC-
Confidence 56766 567777643 344443 8888888765543 337999999987643221 124666777777554
Q ss_pred CCcEEEeeHHHHHHHHHc
Q 039743 81 GVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~ 98 (531)
+.||+|||-|||+|.+.+
T Consensus 325 ~~~viGICGG~QmLG~~i 342 (486)
T COG1492 325 GGDVIGICGGYQMLGRRL 342 (486)
T ss_pred CCCEEEEcchHHhhhhhh
Confidence 899999999999998864
|
|
| >TIGR01382 PfpI intracellular protease, PfpI family | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00061 Score=62.81 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=50.2
Q ss_pred HHHHHHHCCCEEEEEeCCC---------------ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 21 ITRRIRSLSILSLCLSGTC---------------SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 21 i~r~l~~~G~~~~v~~~~~---------------~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
....+++.|..+.++..+. ..+++...++|+|+++||+....-...+. ..++++.+.++++|+.
T Consensus 18 ~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~-l~~~l~~~~~~~~~i~ 96 (166)
T TIGR01382 18 PLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNK-AVRLVREFVEKGKPVA 96 (166)
T ss_pred HHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHH-HHHHHHHHHHcCCEEE
Confidence 4578888898887764321 11111122589999999976211111112 3466777778899999
Q ss_pred EeeHHHHHHHHH
Q 039743 86 GICYGLQLMVQK 97 (531)
Q Consensus 86 GIC~G~Qlla~~ 97 (531)
|||.|.++|+.+
T Consensus 97 ~ic~G~~~La~a 108 (166)
T TIGR01382 97 AICHGPQLLISA 108 (166)
T ss_pred EEChHHHHHHhc
Confidence 999999999984
|
The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs. |
| >KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=67.77 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=75.7
Q ss_pred hhhhhccccCccceeeccCCCCCHHHHHHHHHHHh-------CCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEE
Q 039743 214 VKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAI-------GDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286 (531)
Q Consensus 214 ~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~-------g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd 286 (531)
.+.+++.+=.+-.+-|.||||.||+++|+++.|.+ |.+++...| |+-...+...+.+ +|+.+|..|+..-
T Consensus 215 ~~aV~KRLM~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaI--Gle~SPDL~aark-VAd~igt~Hhe~~ 291 (543)
T KOG0571|consen 215 EKAVRKRLMTDVPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAI--GLEDSPDLLAARK-VADFIGTIHHEHT 291 (543)
T ss_pred HHHHHHHhhccCceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEe--cCCCChhHHHHHH-HHHHhCCcceEEE
Confidence 34445544336689999999999999999997754 335665554 6655567777766 9999999998887
Q ss_pred CchH-HHHhhcCC------CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 287 ATDQ-FLSKLKGV------IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 287 ~~~~-f~~~l~~~------~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
++.. -.+.+..+ -|+..-| +.+-+-++.+..+++| ...++.|.-.|.+.
T Consensus 292 ft~qegidal~eVI~hLETYDvttIR---astpmyLlsr~Ikk~g------vkmvlSGEGsDEif 347 (543)
T KOG0571|consen 292 FTIQEGIDALDEVIYHLETYDVTTIR---ASTPMYLLSRKIKKLG------VKMVLSGEGSDEIF 347 (543)
T ss_pred EcHHHHHHHHHHHheeeeccccceEe---cCCchHHHHHHHHhcc------eEEEEecCCchhhh
Confidence 7632 22223222 1333222 2232335566677776 67788888666553
|
|
| >COG3442 Predicted glutamine amidotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0026 Score=60.05 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=82.2
Q ss_pred HHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CC--CChHHHHHHHHhCCCcEEEeeHHHHHHHH
Q 039743 21 ITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--AP--AFPAGFLEWALSNGVYVLGICYGLQLMVQ 96 (531)
Q Consensus 21 i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~--~~~~~l~~~~~~~~iPvLGIC~G~Qlla~ 96 (531)
+-++.+.+|+.+++.+.+... .+....+|-+++.||.. ++.. .. .....-++.+++.++|+|.||-|.|+|.+
T Consensus 26 Lr~ra~~rgi~v~i~~vsl~d-~~~~~~~Dl~~~GGgqD--~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~ 102 (250)
T COG3442 26 LRQRAEKRGIKVEIVEVSLTD-TFPDDSYDLYFLGGGQD--YEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ 102 (250)
T ss_pred ehHHHHhcCCceEEEEeecCC-CCCcccccEEEecCchH--HHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence 457788899999998875432 23245678888877754 2111 00 11224566778889999999999999998
Q ss_pred Hc----CCEEeec-----------CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEE-----e
Q 039743 97 KL----DGVVKVG-----------EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVAR-----S 156 (531)
Q Consensus 97 ~~----GG~v~~~-----------~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~-----s 156 (531)
.+ |-++... .++-.|.-.++.+..+ +.+.+. ..=+-+|+-. +-|.++++.++. .
T Consensus 103 yY~~a~G~ri~GlGiLd~~T~~~~~~R~IGdiv~~~~~~~---e~~~et--~~GFENH~Gr-T~L~~d~~pLG~Vv~G~G 176 (250)
T COG3442 103 YYETASGTRIDGLGILDHYTENPQTKRFIGDIVIENTLAG---EEFGET--LVGFENHGGR-TYLGPDVKPLGKVVYGYG 176 (250)
T ss_pred eeecCCCcEeecccceeeeeccccccceeeeEEeecccch---HHhCCe--eeeeecCCCc-eecCCCCccceeEEEccC
Confidence 53 4333322 1222333323222111 112333 4555577643 445544444443 2
Q ss_pred CC--CcEEEEEECCCcEEEEecCC
Q 039743 157 QQ--GAVAAVENREKRLFGLQYHP 178 (531)
Q Consensus 157 ~~--~~v~ai~~~~~~i~gvQFHP 178 (531)
++ ...+++.. ++++|+=||=
T Consensus 177 Nn~eD~~eG~~y--kn~~aTY~HG 198 (250)
T COG3442 177 NNGEDGTEGAHY--KNVIATYFHG 198 (250)
T ss_pred CCccccccceee--eeeEEEeecC
Confidence 22 23455543 5799999984
|
|
| >cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0013 Score=60.60 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=50.9
Q ss_pred HHHHHHHHCCCEEEEEeCC-CC----------------hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCC
Q 039743 20 LITRRIRSLSILSLCLSGT-CS----------------LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~-~~----------------~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~i 82 (531)
.+...++..|+++.++..+ .. .++....++|+|+++||+.. ...........+++.+.++++
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~-~~~~~~~~~~~~l~~~~~~~~ 95 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNP-DKLRRDPDAVAFVRAFAEAGK 95 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCCh-hhhccCHHHHHHHHHHHHcCC
Confidence 3557788899988887544 21 11111235799999999842 111111112456677778899
Q ss_pred cEEEeeHHHHHHHHH
Q 039743 83 YVLGICYGLQLMVQK 97 (531)
Q Consensus 83 PvLGIC~G~Qlla~~ 97 (531)
||.|||.|.++|+++
T Consensus 96 ~i~~ic~G~~~La~a 110 (165)
T cd03134 96 PVAAICHGPWVLISA 110 (165)
T ss_pred eEEEEchHHHHHHhc
Confidence 999999999999984
|
A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. |
| >cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.001 Score=65.04 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=39.8
Q ss_pred cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 46 AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 46 ~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..+||+|+||||.+..++-.......++++.+.++++||-.||.|-++|..+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 4579999999997644332222223578888889999999999999999886
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer. |
| >cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00025 Score=61.07 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=30.7
Q ss_pred CCCCEEEEcCCCCCCCCCC-CCCChHHHHHHHHhCCCcEEEeeHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPD-APAFPAGFLEWALSNGVYVLGICYGLQLM 94 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~-~~~~~~~l~~~~~~~~iPvLGIC~G~Qll 94 (531)
.++|.||||||.....-.. ...- .+.++...+++.|+||||+|.-+.
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHHHHHHHHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 4789999999755321111 0111 345555567899999999998765
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved. |
| >PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.011 Score=61.22 Aligned_cols=173 Identities=20% Similarity=0.190 Sum_probs=93.5
Q ss_pred EEEEE-eCCCCc--HHHHHHHHHH-CCCEEEEEeCCCC-h-hccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhC
Q 039743 7 LVLIL-DYGSQY--THLITRRIRS-LSILSLCLSGTCS-L-DDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSN 80 (531)
Q Consensus 7 ~I~Il-D~G~~~--~~~i~r~l~~-~G~~~~v~~~~~~-~-~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~ 80 (531)
+|+|- |-|..- .+.....||+ +.-...|.+.+.. + .+.-..+.+.+|+|||....|....-.-....++.+.++
T Consensus 2 nVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~ 81 (367)
T PF09825_consen 2 NVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADELLNEPWQSKCALLVMPGGADLPYCRSLNGEGNRRIRQFVEN 81 (367)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHHhhcCccccCCcEEEECCCcchHHHHhhChHHHHHHHHHHHc
Confidence 47776 445433 2334556665 3333444444321 1 111135689999999998766543222223567777888
Q ss_pred CCcEEEeeHHHHHHHHHc----CC-EEeecCcc---------------------cceeeeEEEecCCccccCCCCCceEE
Q 039743 81 GVYVLGICYGLQLMVQKL----DG-VVKVGEKQ---------------------EYGRMEILVERSSGIFGNKKVGHHQV 134 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~----GG-~v~~~~~~---------------------e~G~~~v~~~~~~~l~~~~~~~~~~~ 134 (531)
|--.||||.|.-.-+... |. ...-...+ +.|...+.+.-... ...++. +.
T Consensus 82 GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG~~~~gf~Y~se~Gara~~l~~~~~--~~~~~~--~~ 157 (367)
T PF09825_consen 82 GGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARGPAFPGFQYNSESGARAVKLKVNDS--QAVPSE--FS 157 (367)
T ss_pred CCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccCccccCCccCCCCCeEeEEEEecCC--CCCCce--eE
Confidence 999999999998776531 22 12111111 22222222221111 122333 55
Q ss_pred EEeeccCccc---cCCCCcEEEEEeCC--------CcEEEEE--ECCCcEEEEecCCCCCCC
Q 039743 135 VWMSHGDEAV---VLPDGFEVVARSQQ--------GAVAAVE--NREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 135 v~~~H~~~v~---~lp~g~~vla~s~~--------~~v~ai~--~~~~~i~gvQFHPE~~~~ 183 (531)
++.+.+-... +.+.+.+++|...+ ...++|. ..+++++-+-.|||.+..
T Consensus 158 ~yynGG~~Fv~~~~~~~~v~vLA~Y~~~~~v~~~~~~aAvV~c~vGkG~aiLsG~HpE~~~~ 219 (367)
T PF09825_consen 158 SYYNGGGVFVDADKYDKNVEVLARYEDDLDVPGGEGKAAVVYCKVGKGRAILSGPHPEFSPS 219 (367)
T ss_pred EEECCceEEeCccccCCCeEEEEEEecCCCCCCCCCCcEEEEEEeCCceEEEEecccccChh
Confidence 5554333221 22468899998755 2334443 356778999999999863
|
It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase. |
| >cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0029 Score=60.87 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=53.7
Q ss_pred HHHHHHHCCCEEEEEeCC---------------------------------CChhccccCCCCEEEEcCCCCCC---CC-
Q 039743 21 ITRRIRSLSILSLCLSGT---------------------------------CSLDDITAKNPRVVILSGGPHSV---HS- 63 (531)
Q Consensus 21 i~r~l~~~G~~~~v~~~~---------------------------------~~~~~~~~~~~dgiIlsGGp~s~---~~- 63 (531)
....|+++|+++.+.... ..++++...+||+|+||||.+.. ++
T Consensus 22 p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~ 101 (213)
T cd03133 22 TLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDF 101 (213)
T ss_pred HHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhh
Confidence 458899999998886541 11222224469999999996531 11
Q ss_pred ---CCCCC---ChHHHHHHHHhCCCcEEEeeHHHHHHHHHcC
Q 039743 64 ---PDAPA---FPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 64 ---~~~~~---~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~G 99 (531)
....+ ...++++.+.++++||.+||.|-++|+.+.+
T Consensus 102 ~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 102 AVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred cccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 00011 1246777888899999999999999998764
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis. |
| >PRK11574 oxidative-stress-resistance chaperone; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0057 Score=58.07 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=53.8
Q ss_pred CEEEEEeC-CCCc--HHHHHHHHHHCCCEEEEEeCCC------------------ChhccccCCCCEEEEcCCCCCCCCC
Q 039743 6 ELVLILDY-GSQY--THLITRRIRSLSILSLCLSGTC------------------SLDDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 6 ~~I~IlD~-G~~~--~~~i~r~l~~~G~~~~v~~~~~------------------~~~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
+||+|+=+ |.+- .......++++|..+.+..... .++++...++|.|+++||+......
T Consensus 3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~ 82 (196)
T PRK11574 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECF 82 (196)
T ss_pred ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhh
Confidence 45676632 3222 2234578888887766643211 1112212368999999996432211
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHHHHHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQ 96 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~ 96 (531)
........+++.+.+++.+|.+||-|..+|..
T Consensus 83 ~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 83 RDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred hhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 11111345677777889999999999997654
|
|
| >cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0033 Score=56.39 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=57.9
Q ss_pred CEEEEEeCCCCc---HHHHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCC-CCC
Q 039743 6 ELVLILDYGSQY---THLITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHS-PDA 66 (531)
Q Consensus 6 ~~I~IlD~G~~~---~~~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~-~~~ 66 (531)
.+|+|+=+.+-. .......++.+|.++.++..+.. +++....++|+|+++||...... ...
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~ 81 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPS 81 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccC
Confidence 357777443322 23456888889999887754321 11111225899999999763211 111
Q ss_pred CCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
+ ...++++.+.+++.||.+||-|-.+|+.+
T Consensus 82 ~-~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 82 G-RALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred h-HHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 1 13456677777899999999999999984
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C |
| >KOG2594 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.013 Score=59.24 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCCCcccccceecccccCCHHH
Q 039743 312 FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDE 388 (531)
Q Consensus 312 ~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~e 388 (531)
....+..+|.+.| ++.++.|++..|+.+... -.|.| -.|-+.-.+-.-...-..++++||+++.+.|
T Consensus 184 k~kll~~vA~~~g------~~~i~~g~~~t~la~~vlt~v~~GRG----~sis~~v~~~d~r~~~d~~llrPLrDl~~~E 253 (396)
T KOG2594|consen 184 KMKLLQKVAAENG------YNRIVLGDSTTDLASHVLTAVVKGRG----GSISTDVQVVDKRPKGDVKLLRPLRDLLSLE 253 (396)
T ss_pred HHHHHHHHHHHcC------CCEEEecCchhHHHHHHHHHHHhccC----ccceehhhhhccccCCCceeehhHHHHHHHH
Confidence 3456777888777 899999999999876421 12322 1222211111111112478999999999999
Q ss_pred HHHHHHHcCCCc
Q 039743 389 VRQLGRILNVPE 400 (531)
Q Consensus 389 Vr~la~~lglp~ 400 (531)
|..|...-|++.
T Consensus 254 i~~y~~l~~l~~ 265 (396)
T KOG2594|consen 254 ITSYCLLDGLAY 265 (396)
T ss_pred HHHHHHhhcCCc
Confidence 999999999984
|
|
| >PRK04155 chaperone protein HchA; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.005 Score=62.03 Aligned_cols=51 Identities=22% Similarity=0.442 Sum_probs=38.6
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+||+|+||||.+...+-.......++++++.++++||..||.|-++|..+
T Consensus 146 ~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 146 SDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred ccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 589999999997754332112224578888999999999999999877763
|
|
| >PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0024 Score=61.66 Aligned_cols=159 Identities=15% Similarity=0.171 Sum_probs=73.5
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEE-EE-eCCC---CChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCV-FV-DNGL---LRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v-~i-d~g~---~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
|+++.+|||+||+.+++.+.+. .+|.++ ++ +... +...-..+..+..|+.+|||+..+..+..
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~--~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~---------- 69 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ--HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGD---------- 69 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT---EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE-------------
T ss_pred cEEEEEcCcHHHHHHHHHHHHh--CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCc----------
Confidence 6889999999999999988886 566543 33 2221 11111112233367889999998877420
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEP 380 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~P 380 (531)
.+. . .+-+.+..++++ .+.++.|.+..+-.- .-++ .+....+++.+.|
T Consensus 70 ~~~---~-----~~~l~~~l~~~~------v~~vv~GdI~~~~~r------------~~~e------~vc~~lGl~~~~P 117 (218)
T PF01902_consen 70 EED---Y-----VEDLKEALKELK------VEAVVFGDIDSEYQR------------NWVE------RVCERLGLEAVFP 117 (218)
T ss_dssp CCC---H-----HHHHHHHHCTC--------SEEE--TTS-HHHH------------HHHH------HHHHHCT-EEE-T
T ss_pred cch---h-----hHHHHHHHHHcC------CCEEEECcCCcHHHH------------HHHH------HHHHHcCCEEEec
Confidence 110 1 122333334444 788988887533110 0011 1222345679999
Q ss_pred cccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCC-CCcchHHHHHhh
Q 039743 381 LKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD-VTEGNSLDILRQ 432 (531)
Q Consensus 381 L~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~-vt~~~l~~~~~~ 432 (531)
|=.....++-+-.-+.|+..-++.- ...+|--.++|. +|++-+ +.+.+
T Consensus 118 LW~~d~~~ll~e~i~~Gf~aiIv~V---~~~~L~~~~LGr~l~~e~i-~~L~~ 166 (218)
T PF01902_consen 118 LWGRDREELLREFIESGFEAIIVKV---DADGLDESFLGRELDRELI-EELPE 166 (218)
T ss_dssp TTT--HHHHHHHHHHTT-EEEEEEE---ESTT--GGGTT-B--HHHH-HHHHH
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEEE---eccCCChHHCCCCccHHHH-HHHHH
Confidence 9888877765544567886544332 223555666765 355544 44443
|
The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D. |
| >COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0044 Score=62.17 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=44.6
Q ss_pred chhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHH---hC-CcEEEEEEeCCCCChhHHHHHHHHH
Q 039743 208 NVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKA---IG-DRLHCVFVDNGLLRYKERERVMDTF 274 (531)
Q Consensus 208 ~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~---~g-~~v~~v~id~g~~~~~e~~~~~~~l 274 (531)
+..+..+++|.=.+..-.+|.|+||||+||.|+++|+++. .| .++..+|+|.--.-...++.+.+.+
T Consensus 11 nV~eA~~eRl~~if~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs~TidyV~em~ 81 (407)
T COG3969 11 NVLEAAIERLEWIFNTFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYSCTIDYVQEMR 81 (407)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhhhHHHHHHHHH
Confidence 3345555555544555579999999999999999999764 35 4788899995432233444555533
|
|
| >cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31) | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0061 Score=59.62 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+||+|++|||....++-.......++++.+.++++||-.||.|-+.|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 479999999997654432222223468888889999999999999977764
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer. |
| >cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1 | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0093 Score=54.49 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=50.3
Q ss_pred HHHHHHHHCCCEEEEEeCCC----------------ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 20 LITRRIRSLSILSLCLSGTC----------------SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~----------------~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
.....++.+|+++.++..+. ..++....++|.|+++||+..........-..++++.+.+++.+
T Consensus 16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~ 95 (163)
T cd03135 16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKL 95 (163)
T ss_pred HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCE
Confidence 45678888888777654321 11111124789999999973211110111134566777778999
Q ss_pred EEEeeHHHHHHHHH
Q 039743 84 VLGICYGLQLMVQK 97 (531)
Q Consensus 84 vLGIC~G~Qlla~~ 97 (531)
|.+||-|..+|+++
T Consensus 96 i~~ic~g~~~La~a 109 (163)
T cd03135 96 IAAICAAPAVLAKA 109 (163)
T ss_pred EEEEchhHHHHHHc
Confidence 99999999999986
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly |
| >COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.02 Score=53.91 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=57.8
Q ss_pred CEEEEEeC-CCCcHHH--HHHHHHHCCCEEEEEeCCCC------------------hhccccCCCCEEEEcCC-CCCCCC
Q 039743 6 ELVLILDY-GSQYTHL--ITRRIRSLSILSLCLSGTCS------------------LDDITAKNPRVVILSGG-PHSVHS 63 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~--i~r~l~~~G~~~~v~~~~~~------------------~~~~~~~~~dgiIlsGG-p~s~~~ 63 (531)
.+|+|+-+ |..-... -...++++|..+.+...... .++....+||+|++||| .+..+.
T Consensus 3 ~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~ 82 (188)
T COG0693 3 KKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYL 82 (188)
T ss_pred ceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhc
Confidence 45776643 3222222 34788899987776543321 11111247999999999 543332
Q ss_pred CCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
... ....++++.+.++++||..||-|-++|+.+
T Consensus 83 ~~~-~~~~~~v~~~~~~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 83 RPD-PDLLAFVRDFYANGKPVAAICHGPAVLAAA 115 (188)
T ss_pred cCc-HHHHHHHHHHHHcCCEEEEEChhHHHHhcc
Confidence 211 223467778888899999999999999975
|
|
| >PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.00095 Score=60.42 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=41.8
Q ss_pred CCCChhccccCCCCEEEEcCCCCCCCCCCCC-CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 37 GTCSLDDITAKNPRVVILSGGPHSVHSPDAP-AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 37 ~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~-~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+..++++...+||+||||||......-... .....+++.+.++++||.+||.|-.+|+.+
T Consensus 26 ~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 26 PDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp SSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred CCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 3455666666679999999998732211101 223467788888999999999999999885
|
Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C .... |
| >cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0077 Score=58.48 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=37.8
Q ss_pred cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 46 AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 46 ~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..++|+|+|+||+...++-....-..++++.+.++++||.+||.|-++|+.+
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 3468999999997643222111123467777788899999999999999985
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different |
| >cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.023 Score=52.61 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=35.8
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|+|+++||+..... ..+ ...++++.+.+++.+|.+||-|.++|+++
T Consensus 59 ~~~D~l~I~Gg~~~~~~-~~~-~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNP-EAP-DLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccC-CcH-HHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 46899999999752211 111 12456677777899999999999999985
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PRK05282 (alpha)-aspartyl dipeptidase; Validated | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.014 Score=57.08 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=61.1
Q ss_pred CEEEEEeCCC------CcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC-CCCChHHHHHHHH
Q 039743 6 ELVLILDYGS------QYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD-APAFPAGFLEWAL 78 (531)
Q Consensus 6 ~~I~IlD~G~------~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l~~~~~ 78 (531)
++|++|-.-+ .|...+-++++.+|+.+..+....+..+. ..+.|+|+++||-....-.. ..+-..+.++.+.
T Consensus 32 ~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~-l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~ 110 (233)
T PRK05282 32 RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAA-IENAEAIFVGGGNTFQLLKQLYERGLLAPIREAV 110 (233)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHH-HhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHH
Confidence 5799995543 25666778888999987766543222111 46789999999966322110 0011234566667
Q ss_pred hCCCcEEEeeHHHHHHHHHcC
Q 039743 79 SNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 79 ~~~iPvLGIC~G~Qlla~~~G 99 (531)
++|+|+.|+|.|+-+++....
T Consensus 111 ~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 111 KNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HCCCEEEEECHHHHhhhccce
Confidence 889999999999988777543
|
|
| >cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.023 Score=54.65 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=63.2
Q ss_pred CEEEEEeCCC----CcHHHHHHHHHHCCCEEEEEeCCC--Chhcc--ccCCCCEEEEcCCCCCCCCCC--CCCChHHHHH
Q 039743 6 ELVLILDYGS----QYTHLITRRIRSLSILSLCLSGTC--SLDDI--TAKNPRVVILSGGPHSVHSPD--APAFPAGFLE 75 (531)
Q Consensus 6 ~~I~IlD~G~----~~~~~i~r~l~~~G~~~~v~~~~~--~~~~~--~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~ 75 (531)
.+|++|...+ .|...+.+.++++|+..+.++... +.+++ ...+.|+|+++||-...+-.. .......+.+
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~ 109 (210)
T cd03129 30 ARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILK 109 (210)
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHH
Confidence 6899998876 567788899999999888665432 11121 157889999999965321110 0123345555
Q ss_pred HHHhCCCcEEEeeHHHHHHHHH
Q 039743 76 WALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 76 ~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+. ++.|+.|+|.|+.++...
T Consensus 110 ~~~-~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 110 RVA-RGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHH-cCCeEEEcCHHHHHhhhc
Confidence 555 799999999999999985
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from |
| >KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.068 Score=56.20 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=37.3
Q ss_pred CcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHH----HHcCCC--ccccc
Q 039743 331 PAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLG----RILNVP--EQFLK 404 (531)
Q Consensus 331 ~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la----~~lglp--~~~~~ 404 (531)
...|+.|+.+-|. ...|+ -|++.-+. ..|.|+..++|.+.|.+. +++|+| ++++.
T Consensus 508 GglLVLGSaNVDE----~LrGY--------LTKYDCSS-------ADINPIGgISK~DLr~Fl~~a~~~~~lp~L~~il~ 568 (706)
T KOG2303|consen 508 GGLLVLGSANVDE----SLRGY--------LTKYDCSS-------ADINPIGGISKTDLRRFLQYAKEKFGLPALQSILD 568 (706)
T ss_pred CceEEEecCccch----Hhhhh--------hhhccccc-------cccCCccCccHHHHHHHHHHHHHhcCchHHHHHhc
Confidence 4688899876653 22343 23332222 378999999999999865 367887 34444
Q ss_pred cCCCC
Q 039743 405 RHPFP 409 (531)
Q Consensus 405 ~~P~~ 409 (531)
..|.+
T Consensus 569 a~pTA 573 (706)
T KOG2303|consen 569 APPTA 573 (706)
T ss_pred CCCcc
Confidence 44433
|
|
| >PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.14 Score=47.42 Aligned_cols=92 Identities=24% Similarity=0.324 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHH---HHHHHHHhCCCcEEEEECc-hHHHHhhcCCCC-cc-ccc
Q 039743 232 SGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERER---VMDTFEKDLHLPVTCVDAT-DQFLSKLKGVID-PE-TKR 305 (531)
Q Consensus 232 SGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~---~~~~la~~lgi~~~vvd~~-~~f~~~l~~~~~-p~-~kr 305 (531)
--|.||+.....|.+. |.++++.|.|....+..|-.. ..+.+|+.+||++.+-+.+ +.|+..+++..+ || .+|
T Consensus 6 CCaPCs~~~~~~L~~~-g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~~~e~epE~g~R 84 (176)
T PF02677_consen 6 CCAPCSTYPLERLREE-GFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAVKGLEDEPEGGKR 84 (176)
T ss_pred cCccccHHHHHHHHHC-CCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHHhhCccCCccCch
Confidence 3578999999888887 999999999998888776432 2345899999999888776 567788887764 33 234
Q ss_pred chhh-HHHHHHHHHHHHHhh
Q 039743 306 KIIG-KEFICIFDAFAHDLE 324 (531)
Q Consensus 306 ~~~~-~~~~~~~~~~a~~~g 324 (531)
|..| ..+.+.-.+.|+++|
T Consensus 85 C~~Cy~~RL~~tA~~A~e~g 104 (176)
T PF02677_consen 85 CRVCYDLRLEKTAQYAKELG 104 (176)
T ss_pred hHHHHHHHHHHHHHHHHHcC
Confidence 4443 334445556677766
|
|
| >PRK11249 katE hydroperoxidase II; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.035 Score=62.60 Aligned_cols=92 Identities=14% Similarity=0.036 Sum_probs=58.5
Q ss_pred CEEEEEeC-CCCc--HHHHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLILDY-GSQY--THLITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~IlD~-G~~~--~~~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
.+|+||=+ |..- ...+...|++.|+.+.++..... +++.....||+|+|+||+.+...-...
T Consensus 598 RKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d 677 (752)
T PRK11249 598 RKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADN 677 (752)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhC
Confidence 46888733 3322 23466888999998888754311 111112258999999997532111001
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-...+++.+.++++||.+||-|.++|+.+
T Consensus 678 ~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 678 GDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred HHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 112456677778899999999999999974
|
|
| >PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.33 Score=46.85 Aligned_cols=166 Identities=18% Similarity=0.097 Sum_probs=84.0
Q ss_pred EEEEEeCCC-Cc--------HHHHHHHHH-HCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHH
Q 039743 7 LVLILDYGS-QY--------THLITRRIR-SLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEW 76 (531)
Q Consensus 7 ~I~IlD~G~-~~--------~~~i~r~l~-~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~ 76 (531)
||||+.-+. .+ ...+++.++ ..|+.+++.........-.+.++|.||+........ +.-..+.++.
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l----~~~~~~al~~ 76 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDEL----TDEQRAALRD 76 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-----HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcC----CHHHHHHHHH
Confidence 578886552 22 334666676 467777664322222221257899999987653211 1112455666
Q ss_pred HHhCCCcEEEeeHHH-------HHHHHHcCCEEeecCcccceeeeEEEe-cCCccccCCCCCceEEEEeeccCccccCC-
Q 039743 77 ALSNGVYVLGICYGL-------QLMVQKLDGVVKVGEKQEYGRMEILVE-RSSGIFGNKKVGHHQVVWMSHGDEAVVLP- 147 (531)
Q Consensus 77 ~~~~~iPvLGIC~G~-------Qlla~~~GG~v~~~~~~e~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H~~~v~~lp- 147 (531)
..++|.+++|+..++ .-....+||.....+ ..+...+++. +++|+.++++.. +.+.--+ |.....|
T Consensus 77 ~v~~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~h~--~~~~~~v~~~~~~HPi~~gl~~~--f~~~DE~-Y~~~~~~~ 151 (217)
T PF06283_consen 77 YVENGGGLVGLHGAATDSFPDWPEYNELLGGYFKGHP--PPQPFTVRVEDPDHPITRGLPES--FTIYDEW-YYFLRDPR 151 (217)
T ss_dssp HHHTT-EEEEEGGGGGCCHTT-HHHHHHHS--SEEEE--CEEEEEEEESSTTSCCCTTS-SE--EEEEEEE-EES-BS--
T ss_pred HHHcCCCEEEEcccccccchhHHHHHHeeCccccCCC--CCceEEEEEcCCCChhhcCCCCC--ceEcccc-cccccCCC
Confidence 677899999999554 224446787655433 4455556665 457999999766 5553221 1112233
Q ss_pred CCcEEEEEeCC---------C---cEEEEEECC-CcEE-EEecCCCCC
Q 039743 148 DGFEVVARSQQ---------G---AVAAVENRE-KRLF-GLQYHPEVT 181 (531)
Q Consensus 148 ~g~~vla~s~~---------~---~v~ai~~~~-~~i~-gvQFHPE~~ 181 (531)
++..+|+.... + ++.=....+ ++++ ....|.+.+
T Consensus 152 ~~~~vL~~~~~~~~~~~~~~~~~~Pv~W~~~~GkGRvf~~~lGH~~~~ 199 (217)
T PF06283_consen 152 PNVTVLLTADESSYDPEGGEGGDHPVAWTREYGKGRVFYTTLGHDEET 199 (217)
T ss_dssp -CEEEEEEEE--GGG--TTTSSEEEEEEEEECTTEEEEEE----TTSH
T ss_pred CCEEEEEEEEeccccccccCCCeEEEEEEEEeCCeeEEEECCCCChhh
Confidence 46888887651 1 333333322 4554 555587653
|
|
| >TIGR01383 not_thiJ DJ-1 family protein | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.025 Score=52.64 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=35.3
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|.|+++||+..............+++.+.+++.||.+||-|..+|+.+
T Consensus 62 ~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 62 EEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred ccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 468999999986321110001112356667777899999999999999985
|
This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus. |
| >COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.0026 Score=62.16 Aligned_cols=204 Identities=20% Similarity=0.353 Sum_probs=121.0
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHH-HHHHHHhCCCcEEEEECchHHHHhhcCCC
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERV-MDTFEKDLHLPVTCVDATDQFLSKLKGVI 299 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~-~~~la~~lgi~~~vvd~~~~f~~~l~~~~ 299 (531)
+...++.+-++.|=.|.- -.+|.+|..++-+| +++.++. .++|++. .|-..+|.....-...++.-.
T Consensus 82 VdA~~~Fl~~L~GvtDPE----~KRKiIG~~FI~VF-------e~ea~k~~~~~LaQG-TiYpDvIES~~g~~~~IKSHH 149 (315)
T COG0519 82 VDAKDRFLSALKGVTDPE----EKRKIIGREFIEVF-------EEEAKKLGAEFLAQG-TIYPDVIESGTGKAGTIKSHH 149 (315)
T ss_pred EchHHHHHHHhcCCCCHH----HHHHHHHHHHHHHH-------HHHHHhCCcceEEec-ccccceeeecCCCCCcccccc
Confidence 344567777888888987 66777786655444 1121111 1223332 355555655410001111111
Q ss_pred C----cc-cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 300 D----PE-TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 300 ~----p~-~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
| |+ .+-+++ ++++.+|+++.+++|..+| +..+++.+.+|+|| +..|+. +|.+.+ ..
T Consensus 150 NVGGLP~~m~lkLv-EPLr~LfKDEVR~lg~~LG----------lp~~iv~RhPFPGP----GLaiRi---lGevt~-Ek 210 (315)
T COG0519 150 NVGGLPEDMKLKLV-EPLRELFKDEVRELGRELG----------LPEEIVYRHPFPGP----GLAVRI---LGEVTR-EK 210 (315)
T ss_pred ccCCCccccceeee-HHHHHHhHHHHHHHHHHhC----------CCHHHhccCCCCCC----CeEEEe---ecccCH-HH
Confidence 1 44 455556 7888999999999986655 57778888999999 456665 444432 34
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCC-----------CccccccCC---CCcc----hHHHHHhhhhHH
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGP-----------GLAVRVLGD---VTEG----NSLDILRQVDEI 436 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p-----------~la~r~~g~---vt~~----~l~~~~~~~d~~ 436 (531)
+.++|--..++.+|+++.+.+..+.+.+.--.|...- -.++|.... .|.+ .. +.|+.+...
T Consensus 211 l~ilR~Ad~I~~eEl~~agly~~~wQaFavll~vksvGV~GD~RtY~~~valRaV~s~D~MTa~~~~lp~-~~L~~is~R 289 (315)
T COG0519 211 LEILREADAIVEEELRKAGLYDKIWQAFAVLLPVKSVGVMGDGRTYGYVVALRAVESIDGMTADWARLPY-DVLEKISNR 289 (315)
T ss_pred HHHHHHHhHHHHHHHHhcCcchhhhHHHhhccccceeeecCCCcccCceEEEEEEecccccccccccCCH-HHHHHHHHH
Confidence 5567766668899999866666666655555553321 123444322 1322 33 567888888
Q ss_pred HHHHHHHcC--cccccccceee
Q 039743 437 FIQSIKEAG--LYDLIWQAFAV 456 (531)
Q Consensus 437 ~~~~l~~~~--~~~~~~q~~~v 456 (531)
+.+++.+.+ +|+-.++.|+.
T Consensus 290 I~nEv~~V~RVvYDItsKPPaT 311 (315)
T COG0519 290 ITNEVPGVNRVVYDITSKPPAT 311 (315)
T ss_pred hhhcCCCcceEEeeCCCCCCCC
Confidence 888887765 66666666664
|
|
| >cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.063 Score=50.73 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=35.7
Q ss_pred CCCCEEEEcCCCCCCC--CCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVH--SPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~--~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|.|+++||+.... ..........+++.+.+++.+|.+||-|..+|+++
T Consensus 68 ~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 68 PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 4789999999875421 01111112356666677899999999999999984
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.13 Score=53.73 Aligned_cols=35 Identities=40% Similarity=0.560 Sum_probs=27.6
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCC--cEEEEEEe
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGD--RLHCVFVD 258 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~--~v~~v~id 258 (531)
..+|.|.||||+||+|+|++++..+.. .+..+.+-
T Consensus 250 ~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVa 286 (520)
T KOG0573|consen 250 ESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVA 286 (520)
T ss_pred cCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEee
Confidence 368999999999999999999998763 34444443
|
|
| >COG1636 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.38 Score=44.66 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=71.9
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHH---HHHHHHHHhCCCcEEEEEC-c-hHHHHhhcCC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERE---RVMDTFEKDLHLPVTCVDA-T-DQFLSKLKGV 298 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~---~~~~~la~~lgi~~~vvd~-~-~~f~~~l~~~ 298 (531)
..++++=.--+.||+-++--+.+. |.+++..|-|....+..|-+ +..+.+|+++||++.--|. + +.|+..++|.
T Consensus 3 ~~kiLlH~CCAPcs~y~le~l~~~-~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w~~~vKg~ 81 (204)
T COG1636 3 RPKLLLHSCCAPCSGYVLEKLRDS-GIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKWFERVKGM 81 (204)
T ss_pred CCeeEEEeecCCCcHHHHHHHHhc-CcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccHHHHHHHhhcc
Confidence 357888888889999999888887 88999999888888776633 2234589999999877777 3 3488889998
Q ss_pred CC-cc-cccchhhHH-HHHHHHHHHHHhh
Q 039743 299 ID-PE-TKRKIIGKE-FICIFDAFAHDLE 324 (531)
Q Consensus 299 ~~-p~-~kr~~~~~~-~~~~~~~~a~~~g 324 (531)
.+ || .+||.+|=- +.+.-...|+++|
T Consensus 82 E~EpE~G~RC~~Cfd~Rle~tA~~A~e~G 110 (204)
T COG1636 82 EDEPEGGKRCTMCFDMRLEKTAKKAKELG 110 (204)
T ss_pred hhCCCCCchhHhHHHHHHHHHHHHHHHcC
Confidence 76 33 355544432 3345556677776
|
|
| >KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.12 Score=49.56 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=48.4
Q ss_pred HHHHHHCCCEEEEEeCCC----------------ChhccccCCCCEEEEcCC-CCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 22 TRRIRSLSILSLCLSGTC----------------SLDDITAKNPRVVILSGG-PHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 22 ~r~l~~~G~~~~v~~~~~----------------~~~~~~~~~~dgiIlsGG-p~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
...||+.|+.+.+...+. ...+....+||.|||||| |++.+-.+. ....++++...+.+.+|
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~-~~v~~lvK~q~~~gkLI 103 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSEC-EKVVDLVKEQAESGKLI 103 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhc-HHHHHHHHHHHhcCCeE
Confidence 578889999888754321 122222467999999999 764322221 23346777777779999
Q ss_pred EEeeHHHHHHHHH
Q 039743 85 LGICYGLQLMVQK 97 (531)
Q Consensus 85 LGIC~G~Qlla~~ 97 (531)
..||.|- +++.+
T Consensus 104 aaICaap-~~al~ 115 (247)
T KOG2764|consen 104 AAICAAP-LTALA 115 (247)
T ss_pred EEeecch-HHHHh
Confidence 9999974 44443
|
|
| >cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.17 Score=47.41 Aligned_cols=50 Identities=24% Similarity=0.394 Sum_probs=35.4
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|.|+++||......... .-..+.++...+++.+|.+||-|.++|+++
T Consensus 63 ~~~D~liipGg~~~~~~~~~-~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 63 AAADTVIVPGGPDVDGRPPP-PALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCCEEEECCCcccccccCC-HHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 46899999999664211111 112345566667799999999999999985
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.38 Score=45.00 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=35.2
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|.||++||...... ......++++...+++..|.+||-|..+|+++
T Consensus 63 ~~~D~liipgg~~~~~~--~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 63 PPLDYLFVVGGLGARRA--VTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCCEEEEeCCCCcccc--CCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 46899999999653211 11112356666667899999999999999984
|
A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee |
| >cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.27 Score=45.77 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=34.6
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..+|+|+++||+........ ....++++.+.+++.||.++|-|..+|+.+
T Consensus 61 ~~~D~lvipgg~~~~~~~~~-~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 61 PDLDVLLVPGGGGTRALVND-PALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCEEEECCCcchhhhccC-HHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 36899999999653211111 112345566667899999999999999884
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.7 Score=45.83 Aligned_cols=180 Identities=15% Similarity=0.118 Sum_probs=100.7
Q ss_pred CEEEEE-e--CCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCC--ChHHHHHHHHhC
Q 039743 6 ELVLIL-D--YGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPA--FPAGFLEWALSN 80 (531)
Q Consensus 6 ~~I~Il-D--~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~--~~~~l~~~~~~~ 80 (531)
.||+|. | |---|. .-.+.||++|++++...+-.+ +++ ..+.|+|.|+||.--.+.+.... -...-++.+.+.
T Consensus 246 ~rIAVA~D~AF~FyY~-~nl~~Lr~~GAelv~FSPL~D-~~l-P~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~ 322 (451)
T COG1797 246 VRIAVARDAAFNFYYP-ENLELLREAGAELVFFSPLAD-EEL-PPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAA 322 (451)
T ss_pred ceEEEEecchhccccH-HHHHHHHHCCCEEEEeCCcCC-CCC-CCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHc
Confidence 378887 2 222333 356789999998877654332 223 33589999999965333221111 112344556677
Q ss_pred CCcEEEeeHHHHHHHHHc---CCEEeec----------Cc--ccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc
Q 039743 81 GVYVLGICYGLQLMVQKL---DGVVKVG----------EK--QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV 145 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~---GG~v~~~----------~~--~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~ 145 (531)
|+||+|=|-|+--|++.+ .|....+ .. ..+|...++...++++.. -... ++-.-+|.-.+..
T Consensus 323 G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~lGY~~~~~~~d~~~~~-~G~~--irGHEFHyS~~~~ 399 (451)
T COG1797 323 GKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTKRLQALGYREAEAVDDTLLLR-AGEK--IRGHEFHYSRLIT 399 (451)
T ss_pred CCceEEecccceeehhheeccCCceeeeeeeeccchhhhhhhhccceeEEEecCCccccc-CCce--eeeeeeeeeeccc
Confidence 999999999999888865 2222221 11 247777777766665543 2333 5666667655544
Q ss_pred CCCCcEEEEE--eCCCc---EEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 146 LPDGFEVVAR--SQQGA---VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 146 lp~g~~vla~--s~~~~---v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
.++ .+.... ..++. -.++. .++++|.=.|-=... ...+.++|+ ..|
T Consensus 400 ~~~-~~~a~~~~~g~g~~~~~~G~~--~gnv~asY~H~H~~s---~~~~~~~~v-~~~ 450 (451)
T COG1797 400 EED-AEPAFRVRRGDGIDNGRDGYR--SGNVLASYLHLHFAS---NPAFAARFV-AAA 450 (451)
T ss_pred CCc-CceeeeeecccCcccccccee--eCCeEEEEEeeeccc---CHHHHHHHH-Hhh
Confidence 442 222221 11221 23444 257777777653322 245777776 444
|
|
| >COG4285 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.33 E-value=7.9 Score=37.02 Aligned_cols=129 Identities=14% Similarity=0.087 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecCcc----cceeeeEEEe---c
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQ----EYGRMEILVE---R 119 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~----e~G~~~v~~~---~ 119 (531)
++-..+|+|||..-+|-........+.+....++|--.||||.|. .||+.......+ -.|..++.+= .
T Consensus 48 ~~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~-----YFg~~~veF~~p~~~~vvgkRdL~fFpGT~ 122 (253)
T COG4285 48 ETTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG-----YFGSAYVEFAEPTGIEVVGKRDLGFFPGTA 122 (253)
T ss_pred hceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc-----cccceEEEEecCCCceeeecccccccCCcc
Confidence 345789999998876655332333344455566688999999985 567665543211 1122222221 1
Q ss_pred CCccccC------------------CCCCceEEEEeeccCccc--cCCCCcEEEEEeCCC--cEEEEE---ECCCcEEEE
Q 039743 120 SSGIFGN------------------KKVGHHQVVWMSHGDEAV--VLPDGFEVVARSQQG--AVAAVE---NREKRLFGL 174 (531)
Q Consensus 120 ~~~l~~~------------------~~~~~~~~v~~~H~~~v~--~lp~g~~vla~s~~~--~v~ai~---~~~~~i~gv 174 (531)
.+|.+.+ .... ...+++-+-... +-=++.+++|+.++- .-+||. ..++.+.-.
T Consensus 123 ~GP~y~gF~Y~S~~GaRaa~l~~~d~~~~--~~~~FNGG~~F~~aE~~~~v~I~ArY~e~~~~pAAIV~~~vgkG~vvLs 200 (253)
T COG4285 123 RGPAYAGFSYNSESGARAAPLKFNDFLGD--CYAYFNGGGYFEDAENYPNVEIEARYEELPGKPAAIVSCTVGKGLVVLS 200 (253)
T ss_pred CCCccCCccccCcccceeeeeeeCCCccc--eEEEEcCceEEeccCCCCCcEEEEehhcCCCCceeEEEEEecCccEEEe
Confidence 2233333 2222 334443332221 122468899987543 234543 245678878
Q ss_pred ecCCCCCC
Q 039743 175 QYHPEVTH 182 (531)
Q Consensus 175 QFHPE~~~ 182 (531)
=.|||..+
T Consensus 201 GpH~Ey~p 208 (253)
T COG4285 201 GPHPEYLP 208 (253)
T ss_pred cCChhhch
Confidence 89999876
|
|
| >cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.78 Score=44.36 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=60.2
Q ss_pred CEEEEEeCCC----CcHHHHHHHHHHCCCE-EEEEeCCC----Chhcc--ccCCCCEEEEcCCCCCCCCCC-CCCChHHH
Q 039743 6 ELVLILDYGS----QYTHLITRRIRSLSIL-SLCLSGTC----SLDDI--TAKNPRVVILSGGPHSVHSPD-APAFPAGF 73 (531)
Q Consensus 6 ~~I~IlD~G~----~~~~~i~r~l~~~G~~-~~v~~~~~----~~~~~--~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l 73 (531)
.+|++|...+ .+...+.+.++++|+. +..+..+. +.+++ ...+.|+|+++||-...+-.. ...-....
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~ 109 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDA 109 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHH
Confidence 5799998876 4566788888999985 44443331 11111 156789999999965321110 01112345
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
++.+.+++.|+.|+--|+-+++..
T Consensus 110 l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 110 LRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHcCCEEEEccHHHHhhhhc
Confidence 666677899999999999988764
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. |
| >PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C | Back alignment and domain information |
|---|
Probab=89.03 E-value=0.23 Score=45.54 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=32.5
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..+|.||++||+.. .....+......++...+++.+|.+||-|..+|+++
T Consensus 60 ~~~D~lvvpg~~~~-~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 60 PDFDILVVPGGPGF-DAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp SCCSEEEEE-STTH-HHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred ccCCEEEeCCCCCc-hhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 56899999999871 000111111234444456789999999999999996
|
... |
| >PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=88.49 E-value=1.1 Score=45.41 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=51.1
Q ss_pred CCCCCCEEEEEe-CCCCc----HHHHHHHHHHCCCEEEEEeCCCC-----------hhccccCCCCEEEEcCCCCCCCCC
Q 039743 1 MENKPELVLILD-YGSQY----THLITRRIRSLSILSLCLSGTCS-----------LDDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 1 ~~~~~~~I~IlD-~G~~~----~~~i~r~l~~~G~~~~v~~~~~~-----------~~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
|.++|.+|+|+- .+... ...+.++|++.|+.+.+.+.... .+++ ..++|.+|.-||-++.
T Consensus 1 ~~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~lGGDGT~--- 76 (292)
T PRK03378 1 MNNHFKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEI-GQQADLAIVVGGDGNM--- 76 (292)
T ss_pred CCccCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-CCCCCEEEEECCcHHH---
Confidence 677778888883 33333 34577788889988876542110 0111 2357999999996632
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
....+.+...++|||||-.|.
T Consensus 77 ------L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 77 ------LGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred ------HHHHHHhcCCCCeEEEEECCC
Confidence 223333334589999999886
|
|
| >PRK09393 ftrA transcriptional activator FtrA; Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=1.2 Score=45.55 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|.||+|||..... ...+. ..++++...+++.+|.|||-|.-+|+.+
T Consensus 74 ~~~D~livpGg~~~~~-~~~~~-l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 74 DRADTIVIPGWRGPDA-PVPEP-LLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCCEEEECCCCcccc-cCCHH-HHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 4689999999865321 11111 2245555556789999999999999984
|
|
| >KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.00 E-value=5.3 Score=38.20 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=41.8
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC-ChhHHH---------HHHHHHHHhCCCcEEEEECc
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL-RYKERE---------RVMDTFEKDLHLPVTCVDAT 288 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~-~~~e~~---------~~~~~la~~lgi~~~vvd~~ 288 (531)
|++..+|||+||-....-+.+. |-+++|+--=+.-- ..+|.. ++...+++-+++|+..-.+.
T Consensus 2 rvvaLiSGGKDScynmm~cv~~-gHeiVaLanl~p~~d~~delDSyMyQtVGh~~i~lyaecm~lPlyrr~i~ 73 (277)
T KOG2316|consen 2 RVVALISGGKDSCYNMMCCVRL-GHEIVALANLHPKEDESDELDSYMYQTVGHDVIDLYAECMGLPLYRRRIR 73 (277)
T ss_pred cEEEEEeCChHHHHHHHHHHHc-CCeeeeeecccCCcccchhHHHHHHHhhhHHHHHHHHHHhcCceeeeecc
Confidence 5788999999999888777775 88888875322211 112322 23355778889998877664
|
|
| >PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=83.93 E-value=5.4 Score=40.49 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=49.8
Q ss_pred CCCCCCEEEEEe-CCCCc----HHHHHHHHHHCCCEEEEEeCCCC----------------hhccccCCCCEEEEcCCCC
Q 039743 1 MENKPELVLILD-YGSQY----THLITRRIRSLSILSLCLSGTCS----------------LDDITAKNPRVVILSGGPH 59 (531)
Q Consensus 1 ~~~~~~~I~IlD-~G~~~----~~~i~r~l~~~G~~~~v~~~~~~----------------~~~~~~~~~dgiIlsGGp~ 59 (531)
|-+.|.+|+|+- .+... ...+.++|++.|+.+.+.+.... .+++ ..++|.+|.-||-+
T Consensus 1 ~~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDG 79 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTEL-GQYCDLVAVLGGDG 79 (296)
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhc-CcCCCEEEEECCcH
Confidence 555677788883 34333 34567788889998877532111 0111 23579999999965
Q ss_pred CCCCCCCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 60 SVHSPDAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 60 s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
+. ....+.+...++|||||=.|.
T Consensus 80 T~---------L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 TF---------LSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred HH---------HHHHHHhcccCCCEEEEecCC
Confidence 32 223333334589999998875
|
|
| >PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional | Back alignment and domain information |
|---|
Probab=83.17 E-value=4.6 Score=40.93 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEe-CCCCc----HHHHHHHHHHCCCEEEEEeCCC-----------ChhccccCCCCEEEEcCCCCCCCCC
Q 039743 1 MENKPELVLILD-YGSQY----THLITRRIRSLSILSLCLSGTC-----------SLDDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 1 ~~~~~~~I~IlD-~G~~~----~~~i~r~l~~~G~~~~v~~~~~-----------~~~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
|.+++++|+|+- .+... ...+++++++.|+.+.+..... +.+++ ..++|.+|.-||-+++
T Consensus 1 ~~~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDGt~--- 76 (291)
T PRK02155 1 MKSQFKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI-GARADLAVVLGGDGTM--- 76 (291)
T ss_pred CCCcCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh-ccCCCEEEEECCcHHH---
Confidence 667777888873 34322 4567788888998876643211 01111 2357999999996642
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGL 91 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~ 91 (531)
...++.....++|+|||=.|.
T Consensus 77 ------l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 77 ------LGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ------HHHHHHhcCCCCCEEEEcCCC
Confidence 233344334589999998775
|
|
| >TIGR02069 cyanophycinase cyanophycinase | Back alignment and domain information |
|---|
Probab=82.96 E-value=2.7 Score=41.60 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=58.8
Q ss_pred CEEEEEeCCC----CcHHHHHHHHHHCCC-EEEEEeCCC----Chhc-c-ccCCCCEEEEcCCCCCCCCCC-CCCChHHH
Q 039743 6 ELVLILDYGS----QYTHLITRRIRSLSI-LSLCLSGTC----SLDD-I-TAKNPRVVILSGGPHSVHSPD-APAFPAGF 73 (531)
Q Consensus 6 ~~I~IlD~G~----~~~~~i~r~l~~~G~-~~~v~~~~~----~~~~-~-~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l 73 (531)
++|++|-..| .|...+.+.++.+|+ .+.++.... +.++ + ...+.|+|+++||-...+-.. ..+-....
T Consensus 29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~ 108 (250)
T TIGR02069 29 AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLLDR 108 (250)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHH
Confidence 5899996544 234567788889998 466665532 1111 1 156789999999965221110 01123356
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
++.+.+++.|+.|+-.|+-+|+..
T Consensus 109 l~~~~~~G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 109 LRKRVHEGIILGGTSAGAAVMSDT 132 (250)
T ss_pred HHHHHHcCCeEEEccHHHHhcccc
Confidence 666677899999999999888653
|
This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. |
| >COG4090 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=82.60 E-value=6 Score=34.56 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=46.0
Q ss_pred EEEEE---eCCCCcHHHHHHHHHHCCCEEE------------EEeCCCChhccc-cCCCCEEEEcCCCCCCCCCCCCCCh
Q 039743 7 LVLIL---DYGSQYTHLITRRIRSLSILSL------------CLSGTCSLDDIT-AKNPRVVILSGGPHSVHSPDAPAFP 70 (531)
Q Consensus 7 ~I~Il---D~G~~~~~~i~r~l~~~G~~~~------------v~~~~~~~~~~~-~~~~dgiIlsGGp~s~~~~~~~~~~ 70 (531)
+|+.+ .+...|.++++-++|....+.. +.++....++.. ....|.++|.||-..+.-...|.-.
T Consensus 28 ki~fvG~~GvCtPFAeL~~favRDke~~fipd~d~ek~rkl~~~d~G~ql~e~e~~n~aDvvVLlGGLaMP~~gv~~d~~ 107 (154)
T COG4090 28 KIVFVGCPGVCTPFAELLAFAVRDKEQYFIPDLDFEKARKLELTDHGYQLGEREELNSADVVVLLGGLAMPKIGVTPDDA 107 (154)
T ss_pred eEEEecCCcccccHHHHHHHHhhchheeecCCcChhHhheeeeeccceecCCccccccccEEEEEcccccCcCCCCHHHH
Confidence 44444 3445678888888886543321 222222222222 3448999999998755333333333
Q ss_pred HHHHHHHHhCCCcEEEeeH
Q 039743 71 AGFLEWALSNGVYVLGICY 89 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGIC~ 89 (531)
+++++. ..+.|+.|+|+
T Consensus 108 kel~ee--~~~kkliGvCf 124 (154)
T COG4090 108 KELLEE--LGNKKLIGVCF 124 (154)
T ss_pred HHHHHh--cCCCceEEeeH
Confidence 455552 24668999996
|
|
| >PRK03767 NAD(P)H:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.42 E-value=4.8 Score=38.21 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=20.6
Q ss_pred CEEEEEeCCCCc--HHH----HHHHHHH-CCCEEEEEeCC
Q 039743 6 ELVLILDYGSQY--THL----ITRRIRS-LSILSLCLSGT 38 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~----i~r~l~~-~G~~~~v~~~~ 38 (531)
++|+|+- +|.| +.. +++.+++ .|++++++...
T Consensus 2 ~kilIvy-~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLY-YSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEE-cCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 4788884 4434 444 4555666 78898887653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 531 | ||||
| 1gpm_A | 525 | Escherichia Coli Gmp Synthetase Complexed With Amp | 1e-127 | ||
| 3tqi_A | 527 | Structure Of The Gmp Synthase (Guaa) From Coxiella | 1e-127 | ||
| 2ywb_A | 503 | Crystal Structure Of Gmp Synthetase From Thermus Th | 1e-125 | ||
| 2ywc_A | 503 | Crystal Structure Of Gmp Synthetase From Thermus Th | 1e-122 | ||
| 3uow_A | 556 | Crystal Structure Of Pf10_0123, A Gmp Synthetase Fr | 1e-117 | ||
| 2dpl_A | 308 | Crystal Structure Of The Gmp Synthase From Pyrococc | 1e-79 | ||
| 2vxo_A | 697 | Human Gmp Synthetase In Complex With Xmp Length = 6 | 3e-68 | ||
| 2vpi_A | 218 | Human Gmp Synthetase - Glutaminase Domain Length = | 4e-24 | ||
| 1wl8_A | 189 | Crystal Structure Of Ph1346 Protein From Pyrococcus | 3e-20 | ||
| 2d7j_A | 209 | Crystal Structure Analysis Of Glutamine Amidotransf | 5e-20 | ||
| 2a9v_A | 212 | Crystal Structure Of A Putative Gmp Synthase Subuni | 4e-12 |
| >pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And Pyrophosphate Length = 525 | Back alignment and structure |
|
| >pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella Burnetii Length = 527 | Back alignment and structure |
|
| >pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus Length = 503 | Back alignment and structure |
|
| >pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus In Complex With Xmp Length = 503 | Back alignment and structure |
|
| >pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From Plasmodium Falciparum Length = 556 | Back alignment and structure |
|
| >pdb|2DPL|A Chain A, Crystal Structure Of The Gmp Synthase From Pyrococcus Horikoshii Ot3 Length = 308 | Back alignment and structure |
|
| >pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp Length = 697 | Back alignment and structure |
|
| >pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain Length = 218 | Back alignment and structure |
|
| >pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus Horikoshii Length = 189 | Back alignment and structure |
|
| >pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase From Pyrococcus Horikoshii Ot3 Length = 209 | Back alignment and structure |
|
| >pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45 A Resolution Length = 212 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556 | Back alignment and structure |
|---|
Score = 853 bits (2207), Expect = 0.0
Identities = 226/563 (40%), Positives = 334/563 (59%), Gaps = 40/563 (7%)
Query: 1 MENKP-ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPH 59
ME + + +L+L++GSQY HLI +R+ ++ I S L DI N + VILSGGP+
Sbjct: 2 MEGEEYDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPY 61
Query: 60 SVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVER 119
SV +P E+ L + + GICYG+Q + +++G VK + EYG ++ + R
Sbjct: 62 SVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILR 121
Query: 120 SSGIFGNKKV------------------------------GHHQVVWMSHGDEAVVLPDG 149
+ I VWM+H DE +P+
Sbjct: 122 NDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTKIPEN 181
Query: 150 FEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENV 209
F +V+ S+ + ++ N+E ++G+QYHPEV S +G F +++C +
Sbjct: 182 FYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFDPIRY 241
Query: 210 LDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERER 269
+ E+K I+ + +VI A+SGG+DSTVAA HK +R +F+DNGLLR E E
Sbjct: 242 HELELKNIEKYKH-DHYVIAAMSGGIDSTVAAAYTHKIFKERFFGIFIDNGLLRKNEAEN 300
Query: 270 VMDTFEKDL-HLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLG 328
V + + +T +DA++ FLS L+GV DPE KRKIIGK FI F+ ++++ +
Sbjct: 301 VYTFLKSTFPDMNITKIDASENFLSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDIDIN 360
Query: 329 KKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDE 388
K +L+QGTLYPD+IES + S TIK+HHNVGGLPK++K KL EP K LFKD+
Sbjct: 361 KT--FLLQGTLYPDIIES----KCSKNLSDTIKTHHNVGGLPKNLKFKLFEPFKYLFKDD 414
Query: 389 VRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYD 448
V+ L R LN+PE+ RHPFPGPGLA+RV+G++ + + L+ILR+VD+IFI +K+ GLY+
Sbjct: 415 VKTLSRELNLPEEITNRHPFPGPGLAIRVIGEINK-HKLNILREVDDIFINDLKQYGLYN 473
Query: 449 LIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICN 508
I QAFAV L +SVGV+GD R++ +V LRAV + MTA+WY + LD + +I +
Sbjct: 474 QISQAFAVLLSSKSVGVRGDARSYDYVCVLRAVKTSSFMTANWYQIPYDILDKITTRILS 533
Query: 509 TVRGVNRVVQDITSKPPSTIEWE 531
V+GVNR++ D++SKPP+TIE+E
Sbjct: 534 EVKGVNRILYDVSSKPPATIEFE 556
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527 | Back alignment and structure |
|---|
Score = 826 bits (2136), Expect = 0.0
Identities = 247/534 (46%), Positives = 339/534 (63%), Gaps = 21/534 (3%)
Query: 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHS 63
+LILD+GSQY LI RR+R + + + + I NP +ILSGGP +V
Sbjct: 9 HQHRILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTL 68
Query: 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGI 123
PA E G VLGICYG+Q M +L G V K E+G ++ V + +
Sbjct: 69 SHTLRAPAFIFEI----GCPVLGICYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFL 124
Query: 124 FGN------KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYH 177
F + VWMSHGD LP GFE A + +AA+ + ++R FGLQ+H
Sbjct: 125 FDGIEDQVSPQGEPLLDVWMSHGDIVSELPPGFEATACTDNSPLAAMADFKRRFFGLQFH 184
Query: 178 PEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDS 237
PEVTH+P+G L +F+ +C W ++++++ ++ I++ VG ++ VI LSGGVDS
Sbjct: 185 PEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIEDSIRDIQEKVG-KEQVIVGLSGGVDS 243
Query: 238 TVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKG 297
V ATLVHKAIGD+L CV VD GLLR E + V++ F+K L V CVDA D+F+ LKG
Sbjct: 244 AVTATLVHKAIGDQLVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDRFMKALKG 303
Query: 298 VIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHS 357
+ DPE KRKI G++FI +F+ A KL K +L QGT+YPDVIES T
Sbjct: 304 ISDPEEKRKIAGEQFIRVFEEQAK----KLNVK--WLGQGTIYPDVIESA---KTKTGKG 354
Query: 358 HTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRV 417
H IK+HHNVGGLP +M+LKLIEPL+ LFKDEVR+LG L +P + RHPFPGPGLA+R+
Sbjct: 355 HIIKTHHNVGGLPLNMELKLIEPLRELFKDEVRKLGLELGLPADLIYRHPFPGPGLAIRI 414
Query: 418 LGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVA 477
LG+V+ ++IL+Q D IFI+ +K++ Y + QAFAVF+P++SVGV+GD R + +++A
Sbjct: 415 LGEVSA-EYINILKQADAIFIEELKKSDYYHQVSQAFAVFMPLKSVGVKGDARHYGYIIA 473
Query: 478 LRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
LRAV + D MTA W H+FL V+ +I N ++ V+RVV D+T+KPP+TIEWE
Sbjct: 474 LRAVKTVDFMTAQWADLPHEFLSKVSHRIVNEIKEVSRVVYDMTNKPPATIEWE 527
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525 | Back alignment and structure |
|---|
Score = 825 bits (2133), Expect = 0.0
Identities = 251/534 (47%), Positives = 330/534 (61%), Gaps = 20/534 (3%)
Query: 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHS 63
+LILD+GSQYT L+ RR+R L + + + I NP +ILSGGP S
Sbjct: 6 HKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTE 65
Query: 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGI 123
++P P E GV V G+CYG+Q M +L G V+ ++E+G ++ V S +
Sbjct: 66 ENSPRAPQYVFEA----GVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSAL 121
Query: 124 FGN------KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYH 177
VWMSHGD+ +P F VA ++ A + N EKR +G+Q+H
Sbjct: 122 VRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFH 181
Query: 178 PEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDS 237
PEVTH+ +GM L F+ D+C A W ++D+ V I++ VG +D VI LSGGVDS
Sbjct: 182 PEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIREQVG-DDKVILGLSGGVDS 240
Query: 238 TVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKG 297
+V A L+H+AIG L CVFVDNGLLR E E+V+D F L + V A D+FLS L G
Sbjct: 241 SVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAG 300
Query: 298 VIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHS 357
DPE KRKIIG+ F+ +FD A L + +L QGT+YPDVIES + +
Sbjct: 301 ENDPEAKRKIIGRVFVEVFDEEALKL-----EDVKWLAQGTIYPDVIESA---ASATGKA 352
Query: 358 HTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRV 417
H IKSHHNVGGLPK+MK+ L+EPLK LFKDEVR++G L +P L RHPFPGPGL VRV
Sbjct: 353 HVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFPGPGLGVRV 412
Query: 418 LGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVA 477
LG+V + D+LR+ D IFI+ +++A LYD + QAF VFLPVRSVGV GD R + VV+
Sbjct: 413 LGEVKK-EYCDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWVVS 471
Query: 478 LRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
LRAV + D MTA W + + FL V+ +I N V G++RVV DI+ KPP+TIEWE
Sbjct: 472 LRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEWE 525
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503 | Back alignment and structure |
|---|
Score = 803 bits (2077), Expect = 0.0
Identities = 252/525 (48%), Positives = 340/525 (64%), Gaps = 22/525 (4%)
Query: 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA 66
+VL+LD+GSQYT LI RR+R L SL L G L+++ P+ +ILSGGP SV PDA
Sbjct: 1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA 60
Query: 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGN 126
P G+ +LGICYG+QL+ Q+L G V+ + EYG+ + +F
Sbjct: 61 PRPDPRLFSS----GLPLLGICYGMQLLAQELGGRVERAGRAEYGKALLTRH-EGPLFRG 115
Query: 127 KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEG 186
+ VWMSH D P G+ VVA +++ VAA+ + + R +G+Q+HPEV H+P+G
Sbjct: 116 --LEGEVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKG 173
Query: 187 METLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHK 246
M+ L FL ++ GV W E+VL+E ++ +++ G +D V+ A+SGGVDS+ A L+ K
Sbjct: 174 MQILENFL-ELAGVKRDWTPEHVLEELLREVRERAG-KDRVLLAVSGGVDSSTLALLLAK 231
Query: 247 AIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRK 306
A D L VFVD+GLLR ERE V + L + + VDA ++FL LKGV DPE KRK
Sbjct: 232 AGVDHL-AVFVDHGLLRLGEREEVEGAL-RALGVNLLVVDAKERFLKALKGVEDPEEKRK 289
Query: 307 IIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNV 366
IIG+EF+ F A + +L QGTLYPDVIES G + IKSHHNV
Sbjct: 290 IIGREFVAAFSQVARER-----GPFRFLAQGTLYPDVIES-----AGGHGAAKIKSHHNV 339
Query: 367 GGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNS 426
GGLP+D++ +L+EP +LLFKDEVR+L +L +P+ RHPFPGPGLAVRVLG+VTE
Sbjct: 340 GGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTE-ER 398
Query: 427 LDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDG 486
L+ILR+ D+IF ++E GLY+ + QA AV PVRSVGV GD+R + +V+ALRAVT++D
Sbjct: 399 LEILRRADDIFTSLLREWGLYEKVAQALAVLTPVRSVGVAGDERKYGYVLALRAVTTEDF 458
Query: 487 MTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
MTADW +FLD+ AR+I V + RVV D+TSKPP+TIEWE
Sbjct: 459 MTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697 | Back alignment and structure |
|---|
Score = 719 bits (1858), Expect = 0.0
Identities = 184/573 (32%), Positives = 284/573 (49%), Gaps = 67/573 (11%)
Query: 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD 65
V+ILD G+QY +I RR+R L + S I + R +I+SGGP+SV++ D
Sbjct: 30 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAED 89
Query: 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFG 125
AP F G VLGICYG+Q+M + G V +E G I V+ + +F
Sbjct: 90 APWFDPAIFTI----GKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFR 145
Query: 126 NKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPE 185
+ +VV ++HGD + DGF+VVARS VA + N K+L+G Q+HPEV +
Sbjct: 146 G--LQKEEVVLLTHGDSVDKVADGFKVVARSG-NIVAGIANESKKLYGAQFHPEVGLTEN 202
Query: 186 GMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVH 245
G L+ FL+D+ G + + ++N E ++ IK+ VG V+ LSGGVDSTV L++
Sbjct: 203 GKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLN 261
Query: 246 KAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLS----------- 293
+A+ +++ V +DNG +R +E + V + +K L + V ++A F +
Sbjct: 262 RALNQEQVIAVHIDNGFMRKRESQSVEEALKK-LGIQVKVINAAHSFYNGTTTLPISDED 320
Query: 294 ---------KLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344
L PE KRKIIG F+ I + ++ K + +L QGTL PD+I
Sbjct: 321 RTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEV--FLAQGTLRPDLI 378
Query: 345 ESCPPPGTGRTHSHTIKSHHNVGGLPKDMKL--KLIEPLKLLFKDEVRQLGRILNVPEQF 402
ES +G + IK+HHN L + ++ K+IEPLK KDEVR LGR L +PE+
Sbjct: 379 ESASLVASG--KAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGLPEEL 436
Query: 403 LKRHPFPGPGLAVRVLGDVTE-----------------------GNSLDILRQVDEIFIQ 439
+ RHPFPGPGLA+RV+ +L++V +
Sbjct: 437 VSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFSASVKKPHTLLQRVKACTTE 496
Query: 440 SIKEAGL-YDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKF 498
+E + + A LP+++VGVQGD R++S+V + + D + F
Sbjct: 497 EDQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVCGISSKDEPDWESLI-------F 549
Query: 499 LDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531
L + ++C+ V V + +PP+ +
Sbjct: 550 LARLIPRMCHNVNRVVYIFGPPVKEPPTDVTPT 582
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 8e-49
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 16/133 (12%)
Query: 415 VRVLGDVTE------------GNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVR- 461
V + G + L LRQ D ++E+G I Q + P+
Sbjct: 565 VYIFGPPVKEPPTDVTPTFLTTGVLSTLRQADFEAHNILRESGYAGKISQMPVILTPLHF 624
Query: 462 SVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKIC---NTVRGVNRVVQ 518
Q + V +R + D MT ++ +V K+ + G++R++
Sbjct: 625 DRDPLQKQPSCQRSVVIRTFITSDFMTGIPATPGNEIPVEVVLKMVTEIKKIPGISRIMY 684
Query: 519 DITSKPPSTIEWE 531
D+TSKPP T EWE
Sbjct: 685 DLTSKPPGTTEWE 697
|
| >2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Length = 308 | Back alignment and structure |
|---|
Score = 535 bits (1381), Expect = 0.0
Identities = 162/324 (50%), Positives = 215/324 (66%), Gaps = 20/324 (6%)
Query: 208 NVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKER 267
++E+V+ I++TVG + I ALSGGVDS+ AA L HKAIGDRLH VFV+ G LR E
Sbjct: 5 RFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLRKGEP 63
Query: 268 ERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKL 327
E V+ TF + + + VDA D+F S LKGV DPE KRKIIG+ FI +F+ A K+
Sbjct: 64 EFVVKTFRDEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAK----KI 119
Query: 328 GKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKD 387
G + YL+QGT+ PD IES IKSHHNVGGLP+ + LKLIEPL+ L+KD
Sbjct: 120 GAE--YLIQGTIAPDWIES----------QGKIKSHHNVGGLPEKLNLKLIEPLRDLYKD 167
Query: 388 EVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLY 447
EVR+L + L +PE+ R PFPGPGLAVRV+G+VT + I+R+ + I + ++ AGL
Sbjct: 168 EVRELAKFLGLPEKIYNRMPFPGPGLAVRVIGEVTP-EKIRIVREANAIVEEEVERAGLR 226
Query: 448 DLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKIC 507
WQAFAV L V++VGVQGD R + +A+R V S DGMTA+ + L +A +I
Sbjct: 227 --PWQAFAVLLGVKTVGVQGDIRAYKETIAVRIVESIDGMTANAMNVPWEVLQRIAFRIT 284
Query: 508 NTVRGVNRVVQDITSKPPSTIEWE 531
+ + V RV+ DIT+KPP+TIE+E
Sbjct: 285 SEIPEVGRVLYDITNKPPATIEFE 308
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 263 bits (674), Expect = 1e-85
Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 7/204 (3%)
Query: 2 ENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSV 61
++ V+ILD G+QY +I RR+R L + S I + R +I+SGGP+SV
Sbjct: 21 QSMEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSV 80
Query: 62 HSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSS 121
++ DAP F G VLGICYG+Q+M + G V +E G I V+ +
Sbjct: 81 YAEDAPWFDPAIFTI----GKPVLGICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTC 136
Query: 122 GIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVT 181
+F + +VV ++HGD + DGF+VVARS VA + N K+L+G Q+HPEV
Sbjct: 137 SLFRG--LQKEEVVLLTHGDSVDKVADGFKVVARSGN-IVAGIANESKKLYGAQFHPEVG 193
Query: 182 HSPEGMETLRYFLFDVCGVNAGWK 205
+ G L+ FL+D+ G + +
Sbjct: 194 LTENGKVILKNFLYDIAGCSGTFT 217
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Length = 212 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 1e-80
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 11/210 (5%)
Query: 1 MENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS 60
+ + ++D G Q+TH R +R L + + + ++ ++LSGG +
Sbjct: 9 HHHHMLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSEL--DGLDGLVLSGGAPN 66
Query: 61 VH--SPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVE 118
+ + + +LGIC G Q + V + E+G+ ++ V
Sbjct: 67 IDEELDKLGSVGKYIDDH----NYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVM 122
Query: 119 RSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHP 178
S IFG + VW +H DE + LPD F + A S V ++ + ++ Q+HP
Sbjct: 123 HSENIFGG--LPSEITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKTRPIYATQFHP 180
Query: 179 EVTHSPEGMETLRYFLFDVCGVNAGWKLEN 208
EV H+ G + R F+ +C + EN
Sbjct: 181 EVEHTQYGRDIFRNFI-GICASYREIQKEN 209
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Length = 189 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 1e-72
Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 7/193 (3%)
Query: 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA 66
+++I+D G QY H I R +R L + + + T L++I A NP+ +I SGGP ++ +
Sbjct: 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNC 61
Query: 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGN 126
+ E+ V +LGIC G QL+ + G V GEK EY +EI + IF
Sbjct: 62 EKVLEHYDEF----NVPILGICLGHQLIAKFFGGKVGRGEKAEYSLVEIEIIDEXEIFKG 117
Query: 127 KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEG 186
+ VW SH DE LP F+++ARS+ + A+++ E ++G+Q+HPEV H+ +G
Sbjct: 118 --LPKRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEELPIYGVQFHPEVAHTEKG 175
Query: 187 METLRYFLFDVCG 199
E LR F +CG
Sbjct: 176 EEILRNFA-KLCG 187
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 2e-22
Identities = 32/136 (23%), Positives = 48/136 (35%), Gaps = 9/136 (6%)
Query: 52 VILSGGPHSVHSPDAPAFPAGFLEW---ALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQ 108
V+L GG + + F + L + LGIC G Q++ + L V G+
Sbjct: 61 VVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNG 120
Query: 109 -EYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENR 167
E G + + F V+ HGD LP V S++
Sbjct: 121 EEIGWYFVEKVSDNKFFRE--FPDRLRVFQWHGDT-FDLPRRATRVFTSEKYENQGF--V 175
Query: 168 EKRLFGLQYHPEVTHS 183
+ GLQ+H EV
Sbjct: 176 YGKAVGLQFHIEVGAR 191
|
| >3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} Length = 236 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 1e-17
Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 11/146 (7%)
Query: 52 VILSGGPHSVHSPDAPAFP------AGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVG 105
+IL GGP S S ++ A + ++G+C G QLM
Sbjct: 49 LILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHS 108
Query: 106 EKQEYGRMEI-LVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAV 164
K+E G I L E +V HGD LPD +V+A SQ +
Sbjct: 109 PKKEIGNYLISLTEAGKMDSYLSDFSDDLLVGHWHGD-MPGLPDKAQVLAISQGCPRQII 167
Query: 165 ENREKRLFGLQYHPEVTHSPEGMETL 190
+ + + Q H E T PE + L
Sbjct: 168 K-FGPKQYAFQCHLEFT--PELVAAL 190
|
| >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Length = 250 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 3e-14
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 52 VILSGGPHSVHSPDAPAFPA--GFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQE 109
+ + GGP S + D P P + A++ V V+G C G QL+ + + G V E
Sbjct: 52 LAMMGGPMSAND-DLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPHAE 110
Query: 110 YGRMEILVERSS------GIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAA 163
G + + G + ++ H +P G + RS+ A A
Sbjct: 111 IGWVRAWPQHVPQALEWLGTWDELELFEW------HYQ-TFSIPPGAVHILRSEHCANQA 163
Query: 164 VENREKRLFGLQYHPEVTH 182
+ G Q H E+
Sbjct: 164 YV-LDDLHIGFQCHIEMQA 181
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 1e-12
Identities = 24/184 (13%), Positives = 57/184 (30%), Gaps = 37/184 (20%)
Query: 47 KNPRVVILSGGPHSV---HSPDAP--AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGV 101
K+ ++ GG + + + + V G C G + + + G
Sbjct: 85 KSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGE 144
Query: 102 V------------KVGEKQEYGRMEILVERSSGIFGNKKVG------HHQVVWMSHGDEA 143
+ + + + + V H + + +
Sbjct: 145 CLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMN 204
Query: 144 VVLPDGFEVVARSQQG---AVAAVENREKRLFGLQYHPE-----------VTHSPEGMET 189
L F V+ + G ++ +E + ++G+Q+HPE ++H+P ++T
Sbjct: 205 EKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKT 264
Query: 190 LRYF 193
Y
Sbjct: 265 AFYL 268
|
| >2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A Length = 301 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 1e-11
Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 15/152 (9%)
Query: 39 CSLDDITAKNPRVVILSGGPHSVHSPDAPAFP---AGFLEWALSNGVYVLGICYGLQLMV 95
+ DI + +I++G P S + + +E++ +N L IC+G Q +
Sbjct: 90 KTFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGL 149
Query: 96 QKLDGVVKVGEKQEYGRME--ILVERSSGIFGNKKVGHHQVVWMSHG------DEAVVLP 147
GV K K++ + + E+ + G ++ + H + +
Sbjct: 150 YHHYGVQKYPLKEKMFGVFEHEVREQHVKLLQ----GFDELFFAVHSRHTEVRESDIREV 205
Query: 148 DGFEVVARSQQGAVAAVENREKRLFGLQYHPE 179
++A S++ V V +E R H E
Sbjct: 206 KELTLLANSEEAGVHLVIGQEGRQVFALGHSE 237
|
| >2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} Length = 312 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 7e-10
Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 26/169 (15%)
Query: 39 CSLDDITAKNPRVVILSGGPHSVHSPDAPAFP---AGFLEWALSNGVYVLGICYGLQLMV 95
+ + + I++G P + + + +EW+ N + IC+ Q +
Sbjct: 102 TTFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGL 161
Query: 96 QKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQ---------VVWMSHGD----E 142
G+ K L ++ SG++ ++ S E
Sbjct: 162 YYFYGIPKY----------ELPQKLSGVYKHRVAKDSVLFRGHDDFFWAPHSRYTEVKKE 211
Query: 143 AVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLR 191
+ E++A S + V V N+ +R + HPE E R
Sbjct: 212 DIDKVPELEILAESDEAGVYVVANKSERQIFVTGHPEYDRYTLRDEYYR 260
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Length = 254 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 32/145 (22%)
Query: 74 LEWALSNGVYVLGICYGLQLM--------VQKLDGVVKVGEK------QEYGRMEILVER 119
+ AL G + IC G+QL+ Q + V + ++ G I +E
Sbjct: 101 VRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEP 160
Query: 120 SS---GIFGNKKV---GHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLF- 172
+S NKK+ HHQ + + L F+V AR+ G + AVE +
Sbjct: 161 TSELAKHHPNKKLVNSLHHQFI-----KK---LAPSFKVTARTADGMIEAVEGDNLPSWY 212
Query: 173 -GLQYHPE--VTHSPEGMETLRYFL 194
G+Q+HPE PE + + +
Sbjct: 213 LGVQWHPELMFQTDPESEQLFQALV 237
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Length = 645 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 9e-09
Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 17/193 (8%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPHSVHSPDA 66
LI+D +T +I +++ SL + C + D + VV++ GP
Sbjct: 449 ALIVDAEDHFTAMIAQQLSSLG----LATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGD 504
Query: 67 P--AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIF 124
P A +L + G + +C Q++ L + E G ++ +F
Sbjct: 505 PRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREVPNQG-----IQVEIDLF 559
Query: 125 GNK-KVG--HHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVT 181
G + +VG + V + V + + G V A+ R +Q+H E
Sbjct: 560 GQRERVGFYNTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHAL--RGPTFSSMQFHAESV 617
Query: 182 HSPEGMETLRYFL 194
+ +G L +
Sbjct: 618 LTVDGPRILGEAI 630
|
| >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192 | Back alignment and structure |
|---|
Score = 52.8 bits (128), Expect = 3e-08
Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 29/166 (17%)
Query: 40 SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGF-LEW--ALSNGVYVLGICYGLQLMVQ 96
+D + V++LS GP P AG E L + ++GIC G Q +V+
Sbjct: 39 LIDRLATMKNPVLMLSPGP---GVPSE----AGCMPELLTRLRGKLPIIGICLGHQAIVE 91
Query: 97 KLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA------VV--LPD 148
G V + +G+ + +F +++ V +P
Sbjct: 92 AYGGYVGQAGEILHGKATSIEHDGQAMFAG----------LANPLPVARYHSLVGSNVPA 141
Query: 149 GFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
G + A G V AV + R+ G Q+HPE + +G L L
Sbjct: 142 GLTINAHF-NGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTL 186
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 8e-07
Identities = 73/528 (13%), Positives = 146/528 (27%), Gaps = 149/528 (28%)
Query: 80 NGVYVLGICYGLQLMVQKLDGVVK--VGE--KQEYG-RMEILVERSSGIFGNKK--VGHH 132
+G L ++ K + +V+ V E + Y M + + +
Sbjct: 62 SGTLRL-----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 133 QVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVT-HSPEGM---- 187
++ ++ V V+R Q + L L+ V G+
Sbjct: 117 DRLY----NDNQVFAKYN--VSRLQP-----YLKLRQALLELRPAKNVLID---GVLGSG 162
Query: 188 ------ETLRYFLFDVCGVNAG--W-KLENVLDEEVKCIKDTVGLEDHVICALSGGVDST 238
+ + C ++ W L+N E ++ L + + D +
Sbjct: 163 KTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPET-VLEMLQKLLYQIDPNWTSRSDHS 220
Query: 239 VAATLVHKAIGDRLHCVFVD----NGL--LRYKERERVMDTFEKDLHLPVTCVDATDQFL 292
L +I L + N L L + + + F +L C + L
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLS----C-----KIL 269
Query: 293 --SKLKGVID---PETKRKIIGKEFICIF------DAFAHDLEQKLGKKPAYLVQGTLYP 341
++ K V D T I L+ + P ++ P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--P 327
Query: 342 DVI----ESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEP-LKLLFKDEVRQLGRIL 396
+ ES R T + +V D +IE L +L E R++ L
Sbjct: 328 RRLSIIAESI------RDGLATWDNWKHVN---CDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 397 -------NVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDL 449
++P L + DV + + + + + L +
Sbjct: 379 SVFPPSAHIPTILL-----------SLIWFDVIK--------SDVMVVVNKLHKYSLVEK 419
Query: 450 IWQAFAVFLP--VRSVGVQGDQRT--HSHVVA---LRAVTSQDGMTADW---YY------ 493
+ + +P + V+ + H +V + D + + Y+
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 494 -------------FEHKFLDD--VARKI------CNTVRGVNRVVQDI 520
F FLD + +KI N + +Q +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
|
| >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Length = 195 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 4e-06
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 23/167 (13%)
Query: 40 SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGF-LEW--ALSNGVYVLGICYGLQLMVQ 96
S+ I +P +I+S GP + P+ G L+ L +LG+C G Q +
Sbjct: 37 SIKGIERIDPDRLIISPGPGT---PEKRE-DIGVSLDVIKYLGKRTPILGVCLGHQAIGY 92
Query: 97 KLDGVVKVGEKQEYGRM-EILVERS--SGIFGNKKVG------HHQVVWMSHGDEAVVLP 147
++ K +G++ I++ + ++ H VV + V P
Sbjct: 93 AFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVV------DEVHRP 146
Query: 148 DGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
+ ++ ++ + A+ + E ++G+Q+HPE + G + L FL
Sbjct: 147 LIVDAIS-AEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFL 192
|
| >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} Length = 208 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 5e-06
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 24/129 (18%)
Query: 78 LSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWM 137
++NG+ V C G+ L+ +++ +++ G ++I VER +G + V +
Sbjct: 88 INNGLPVFATCAGVILLAKRIKN----YSQEKLGVLDITVER--NAYGRQVESFETFVEI 141
Query: 138 SHGDE------------AVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPE 185
+ V E++A V +E + +HPE+T
Sbjct: 142 PAVGKDPFRAIFIRAPRIVETGKNVEILATYDYDPVLV---KEGNILACTFHPELTDD-- 196
Query: 186 GMETLRYFL 194
+ RYFL
Sbjct: 197 -LRLHRYFL 204
|
| >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* Length = 196 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 6e-06
Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 23/129 (17%)
Query: 77 ALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQ--- 133
+ G + G C GL ++ +++ G + G + ++VER+S ++V +
Sbjct: 68 FAAQGKPMFGTCAGLIILAKEIAG----SDNPHLGLLNVVVERNS---FGRQVDSFEADL 120
Query: 134 -VVWMSHGDEAV------VLPDGFEVVARSQ-QGAVAAVENREKRLFGLQYHPEVTHSPE 185
+ + V +L G V S+ G + A ++ + G +HPE+T
Sbjct: 121 TIKGLDEPFTGVFIRAPHILEAGENVEVLSEHNGRIVAA--KQGQFLGCSFHPELTE--- 175
Query: 186 GMETLRYFL 194
+ F+
Sbjct: 176 DHRVTQLFV 184
|
| >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G Length = 227 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-05
Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 28/156 (17%)
Query: 52 VILSGGPHSVHSPDAPAFPAGFLE----WALSNGVYVLGICYGLQLMVQKLDGVV---KV 104
+++ GG + + + G C G L+ + ++ +
Sbjct: 47 LVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNF 106
Query: 105 GEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAV--------------VLPDGF 150
G K +G ++I + R+ N + +L D
Sbjct: 107 GNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIREILSDEV 166
Query: 151 EVVARSQ-----QGAVAAVENREKRLFGLQYHPEVT 181
+V+A +AAV + G +HPE+
Sbjct: 167 KVLATFSHESYGPNIIAAV--EQNNCLGTVFHPELL 200
|
| >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} Length = 186 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 23/138 (16%)
Query: 72 GFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGH 131
G LE ++ + +LG C G+ L+ + + M+I V+R++ +G +
Sbjct: 59 GLLEKIKNSNLPILGTCAGMVLLSKGTG-----INQILLELMDITVKRNA--YGRQVDSF 111
Query: 132 HQVVWMSHGDE-----------AVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEV 180
+ + + +L D EV+AR V ++ + L +HPE+
Sbjct: 112 EKEIEFKDLGKVYGVFIRAPVVDKILSDDVEVIARDGDKIVGV---KQGKYMALSFHPEL 168
Query: 181 THSPEGMETLRYFLFDVC 198
+ +G + +YF+ +
Sbjct: 169 SE--DGYKVYKYFVENCV 184
|
| >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 Length = 219 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 77 ALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVW 136
+ G + G C GL L+ +++ G ++ G M+I VER+S + +
Sbjct: 90 FAAAGKPMFGTCAGLILLAKRIVG----YDEPHLGLMDITVERNSFGRQRESFEAELSIK 145
Query: 137 MSHGDEAVV---------LPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGM 187
V DG +V+A VAA R+ + G +HPE+T
Sbjct: 146 GVGDGFVGVFIRAPHIVEAGDGVDVLATYNDRIVAA---RQGQFLGCSFHPELTD---DH 199
Query: 188 ETLRYFL 194
++YFL
Sbjct: 200 RLMQYFL 206
|
| >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Length = 191 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 5e-05
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 22/136 (16%)
Query: 75 EWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQV 134
+ + + G C G + +V E+ G +E VER++ FG + +
Sbjct: 68 KRVEEGSLALFGTCAGAIWL---AKEIVGYPEQPRLGVLEAWVERNA--FGRQVESFEED 122
Query: 135 VWMSHGDE----------AVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSP 184
+ + L +G EV+AR V R+ ++ +HPE+T
Sbjct: 123 LEVEGLGSFHGVFIRAPVFRRLGEGVEVLARLGDLPVLV---RQGKVLASSFHPELT--- 176
Query: 185 EGMETLRYFLFDVCGV 200
E RYFL ++ GV
Sbjct: 177 EDPRLHRYFL-ELAGV 191
|
| >3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} Length = 249 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 206 LENVLDEEVKCIKDTV---GLEDHVICALSGGVDSTVAATLVHKAIGDRLHCV 255
+ + ++ I++ V + V+ LSGG+DS + ATL +A+ + + +
Sbjct: 6 WQKITEKMCDFIQEKVKNSQSQG-VVLGLSGGIDSALVATLCKRALKENVFAL 57
|
| >1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Length = 268 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 227 VICALSGGVDSTVAATLVHKAIGDRLHCVF 256
V+ LSGG+DS V L K + H +
Sbjct: 28 VVYGLSGGLDSAVVGVLCQKVFKENAHALL 57
|
| >3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Length = 203 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 25/166 (15%)
Query: 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286
V SGG DS+++A ++ K G H + ++ G+ + +T + L +
Sbjct: 9 VHVLFSGGKDSSLSAVILKKL-GYNPHLITINFGV--IPSYKLAEETAKI-LGFKHKVIT 64
Query: 287 ATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIES 346
+ + K D + K G I LE L + + L GT D +
Sbjct: 65 LDRKIVEK---AADMIIEHKYPGP---AIQYVHKTVLE-ILADEYSILADGTRRDDRVPK 117
Query: 347 CPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQL 392
I+S L ++ I PL +R L
Sbjct: 118 LSYSE--------IQS------LEMRKNIQYITPLMGFGYKTLRHL 149
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 100.0 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 100.0 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 100.0 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 100.0 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 100.0 | |
| 2dpl_A | 308 | GMP synthetase, GMP synthase [glutamine-hydrolyzin | 100.0 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 100.0 | |
| 2a9v_A | 212 | GMP synthase; structural genomics, joint center fo | 100.0 | |
| 1qdl_B | 195 | Protein (anthranilate synthase (TRPG-SUBUNIT)); tr | 100.0 | |
| 1wl8_A | 189 | GMP synthase [glutamine-hydrolyzing] subunit A; tr | 100.0 | |
| 1i1q_B | 192 | Anthranilate synthase component II; tryptophan bio | 100.0 | |
| 3fij_A | 254 | LIN1909 protein; 11172J, uncharacterized protein, | 100.0 | |
| 3r75_A | 645 | Anthranilate/para-aminobenzoate synthases compone; | 99.97 | |
| 4gud_A | 211 | Imidazole glycerol phosphate synthase subunit His; | 99.97 | |
| 3m3p_A | 250 | Glutamine amido transferase; structural genomics, | 99.97 | |
| 1a9x_B | 379 | Carbamoyl phosphate synthetase (small chain); amid | 99.97 | |
| 3l7n_A | 236 | Putative uncharacterized protein; glutamine amidot | 99.97 | |
| 1o1y_A | 239 | Conserved hypothetical protein TM1158; flavodoxin- | 99.97 | |
| 3d54_D | 213 | Phosphoribosylformylglycinamidine synthase 1; alph | 99.96 | |
| 2ywj_A | 186 | Glutamine amidotransferase subunit PDXT; uncharact | 99.96 | |
| 1gpw_B | 201 | Amidotransferase HISH; lyase/transferase, complex | 99.95 | |
| 2v4u_A | 289 | CTP synthase 2; pyrimidine biosynthesis, glutamine | 99.95 | |
| 1l9x_A | 315 | Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO | 99.95 | |
| 1ka9_H | 200 | Imidazole glycerol phosphtate synthase; riken stru | 99.95 | |
| 2nv0_A | 196 | Glutamine amidotransferase subunit PDXT; 3-layer(A | 99.94 | |
| 2w7t_A | 273 | CTP synthetase, putative cytidine triphosphate syn | 99.93 | |
| 1q7r_A | 219 | Predicted amidotransferase; structural genomics, Y | 99.93 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.92 | |
| 2iss_D | 208 | Glutamine amidotransferase subunit PDXT; (beta/alp | 99.92 | |
| 2ywd_A | 191 | Glutamine amidotransferase subunit PDXT; pyridoxin | 99.91 | |
| 2abw_A | 227 | PDX2 protein, glutaminase; PLP-synthase, vitamin B | 99.91 | |
| 3p52_A | 249 | NH(3)-dependent NAD(+) synthetase; structural geno | 99.9 | |
| 1vco_A | 550 | CTP synthetase; tetramer, riken structural genomic | 99.9 | |
| 3fiu_A | 249 | NH(3)-dependent NAD(+) synthetase; rossman fold, a | 99.89 | |
| 1wxi_A | 275 | NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l | 99.88 | |
| 2h2w_A | 312 | Homoserine O-succinyltransferase; TM0881, (EC 2.3. | 99.88 | |
| 3q4g_A | 279 | NH(3)-dependent NAD(+) synthetase; structural geno | 99.88 | |
| 1s1m_A | 545 | CTP synthase; CTP synthetase, UTP:ammonia ligase ( | 99.88 | |
| 3nva_A | 535 | CTP synthase; rossman fold, nucleotide binding, LI | 99.87 | |
| 2vdj_A | 301 | Homoserine O-succinyltransferase; methionine biosy | 99.87 | |
| 1kqp_A | 271 | NAD+ synthase, NH(3)-dependent NAD(+) synthetase, | 99.87 | |
| 2e18_A | 257 | NH(3)-dependent NAD(+) synthetase; ligase, structu | 99.87 | |
| 2c5s_A | 413 | THII, probable thiamine biosynthesis protein THII; | 99.87 | |
| 1xng_A | 268 | NH(3)-dependent NAD(+) synthetase; amidotransferas | 99.84 | |
| 3dpi_A | 285 | NAD+ synthetase; ssgcid, decode, structural genomi | 99.83 | |
| 3n05_A | 590 | NH(3)-dependent NAD(+) synthetase; ligase, structu | 99.83 | |
| 3bl5_A | 219 | Queuosine biosynthesis protein QUEC; PREQ1 biosynt | 99.79 | |
| 2hma_A | 376 | Probable tRNA (5-methylaminomethyl-2-thiouridylat | 99.78 | |
| 3a2k_A | 464 | TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, | 99.78 | |
| 2der_A | 380 | TRNA-specific 2-thiouridylase MNMA; protein-RNA co | 99.77 | |
| 1wy5_A | 317 | TILS, hypothetical UPF0072 protein AQ_1887; N-type | 99.76 | |
| 3k32_A | 203 | Uncharacterized protein MJ0690; predicted subunit | 99.76 | |
| 2pg3_A | 232 | Queuosine biosynthesis protein QUEC; YP_049261.1, | 99.73 | |
| 1ni5_A | 433 | Putative cell cycle protein MESJ; structural genom | 99.73 | |
| 1k92_A | 455 | Argininosuccinate synthase, argininosuccinate SY; | 99.71 | |
| 3ilv_A | 634 | Glutamine-dependent NAD(+) synthetase; protein str | 99.71 | |
| 1sur_A | 215 | PAPS reductase; assimilatory sulfate reduction, 3- | 99.71 | |
| 3sdb_A | 680 | Glutamine-dependent NAD(+) synthetase; glutamine-a | 99.7 | |
| 1vl2_A | 421 | Argininosuccinate synthase; TM1780, structural gen | 99.67 | |
| 1kor_A | 400 | Argininosuccinate synthetase; ligase, riken struct | 99.66 | |
| 2nz2_A | 413 | Argininosuccinate synthase; amino-acid biosynthesi | 99.59 | |
| 2o8v_A | 252 | Phosphoadenosine phosphosulfate reductase; disulfi | 99.59 | |
| 4f4h_A | 565 | Glutamine dependent NAD+ synthetase; structural ge | 99.55 | |
| 1zun_A | 325 | Sulfate adenylyltransferase subunit 2; beta barrel | 99.53 | |
| 3ugj_A | 1303 | Phosphoribosylformylglycinamidine synthase; amidot | 99.53 | |
| 2oq2_A | 261 | Phosphoadenosine phosphosulfate reductase; sulfate | 99.49 | |
| 1vbk_A | 307 | Hypothetical protein PH1313; structural genomics, | 99.49 | |
| 2goy_A | 275 | Adenosine phosphosulfate reductase; iron sulfur cl | 99.31 | |
| 2wsi_A | 306 | FAD synthetase; transferase, nucleotidyltransferas | 99.2 | |
| 3rjz_A | 237 | N-type ATP pyrophosphatase superfamily; structural | 98.54 | |
| 1fy2_A | 229 | Aspartyl dipeptidase; serine protease, catalytic t | 98.52 | |
| 3fwk_A | 308 | FMN adenylyltransferase; FAD biosynthesis, alpha/b | 98.46 | |
| 3l4e_A | 206 | Uncharacterized peptidase LMO0363; hypothetical pr | 98.34 | |
| 1ct9_A | 553 | Asparagine synthetase B; amidotransferase, substra | 98.34 | |
| 1jgt_A | 513 | Beta-lactam synthetase; asparagine synthetase, cla | 98.26 | |
| 1q15_A | 503 | CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, | 98.16 | |
| 1oi4_A | 193 | Hypothetical protein YHBO; PFPI/THIJ family, compl | 97.98 | |
| 4hcj_A | 177 | THIJ/PFPI domain protein; structural genomics, PSI | 97.87 | |
| 3l18_A | 168 | Intracellular protease I; gatase1_PFPI_LIKE, hydro | 97.35 | |
| 2fex_A | 188 | Conserved hypothetical protein; structural genomic | 97.32 | |
| 4e08_A | 190 | DJ-1 beta; flavodoxin-like fold, stress response, | 97.32 | |
| 3l3b_A | 242 | ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, | 97.31 | |
| 3f5d_A | 206 | Protein YDEA; unknow protein, PSI-II, nysgrc, stru | 97.3 | |
| 1vhq_A | 232 | Enhancing lycopene biosynthesis protein 2; structu | 97.3 | |
| 2rk3_A | 197 | Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha | 97.29 | |
| 2vrn_A | 190 | Protease I, DR1199; cysteine sulfenic acid, DJ-1/T | 97.28 | |
| 1u9c_A | 224 | APC35852; structural genomics, protein structure i | 97.25 | |
| 3ot1_A | 208 | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate | 97.22 | |
| 3efe_A | 212 | THIJ/PFPI family protein; structural GEN csgid, ce | 97.16 | |
| 2ab0_A | 205 | YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase | 97.15 | |
| 3n7t_A | 247 | Macrophage binding protein; seattle structural gen | 97.11 | |
| 3gra_A | 202 | Transcriptional regulator, ARAC family; transcript | 97.1 | |
| 3ej6_A | 688 | Catalase-3; heme, hydrogen iron, metal-binding, ox | 96.91 | |
| 1rw7_A | 243 | YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe | 96.85 | |
| 3er6_A | 209 | Putative transcriptional regulator protein; struct | 96.72 | |
| 3cne_A | 175 | Putative protease I; structural genomics, PSI-2, M | 96.61 | |
| 3kkl_A | 244 | Probable chaperone protein HSP33; peptidase, heat | 96.58 | |
| 3ttv_A | 753 | Catalase HPII; heme orientation, oxidoreductase; H | 96.36 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 96.33 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 96.22 | |
| 3fse_A | 365 | Two-domain protein containing DJ-1/THIJ/PFPI-like | 96.16 | |
| 2iuf_A | 688 | Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen | 96.03 | |
| 3ewn_A | 253 | THIJ/PFPI family protein; monomer, PSI nysgrc, str | 95.44 | |
| 1sy7_A | 715 | Catalase 1; heme oxidation, singlet oxygen, oxidor | 95.36 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 95.25 | |
| 3mgk_A | 211 | Intracellular protease/amidase related enzyme (THI | 94.76 | |
| 3noq_A | 231 | THIJ/PFPI family protein; DJ-1 superfamily, isocya | 94.69 | |
| 4gdh_A | 194 | DJ-1, uncharacterized protein C22E12.03C; unknown | 93.63 | |
| 1n57_A | 291 | Chaperone HSP31, protein YEDU; alpha-beta sandwich | 92.41 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 91.88 | |
| 3bhn_A | 236 | THIJ/PFPI domain protein; structural genomics, joi | 91.31 | |
| 3en0_A | 291 | Cyanophycinase; serine protease, beta peptide spec | 89.8 | |
| 1t0b_A | 252 | THUA-like protein; trehalose metabolism, NCS symme | 89.18 | |
| 2ark_A | 188 | Flavodoxin; FMN, structural genomics, PSI, structu | 86.95 | |
| 4e5v_A | 281 | Putative THUA-like protein; THUA-like proteins, tr | 86.28 | |
| 3rht_A | 259 | (gatase1)-like protein; structural genomics, PSI-b | 84.68 | |
| 2an1_A | 292 | Putative kinase; structural genomics, PSI, protein | 83.41 | |
| 2a5l_A | 200 | Trp repressor binding protein WRBA; APC5760, PA094 | 82.73 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 80.27 |
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-135 Score=1106.81 Aligned_cols=517 Identities=43% Similarity=0.749 Sum_probs=465.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
.++|+|||||+||+++++|+|+++|++++++|++.+.+++...++|||||||||+++++++.+++...+++.+.++++|+
T Consensus 7 ~~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~Pv 86 (556)
T 3uow_A 7 YDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPI 86 (556)
T ss_dssp CCEEEEEESSCTTHHHHHHHHHHTTCCEEEEETTCCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCE
T ss_pred CCEEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCE
Confidence 37899999999999999999999999999999988888876668999999999999999888888889999988899999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCC-------------------------------ccccCC-CCCce
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSS-------------------------------GIFGNK-KVGHH 132 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~-------------------------------~l~~~~-~~~~~ 132 (531)
||||+|||+|++++||+|.+....|+|+..+++..++ ++|+++ ++.
T Consensus 87 LGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~~-- 164 (556)
T 3uow_A 87 FGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDI-- 164 (556)
T ss_dssp EEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSSE--
T ss_pred EEECHHHHHHHHHhCCcEecCCCcccCCcceeeccCcccccccceecccccccccccccccccccccchhhcccccCc--
Confidence 9999999999999999999998889999998887554 799998 766
Q ss_pred EEEEeeccCccccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhh
Q 039743 133 QVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDE 212 (531)
Q Consensus 133 ~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~ 212 (531)
+.+||+|+|.|..+|+|++++|++++++++|++++++++||+|||||+++++.|.+||+||+.++|+|+++|+|++++++
T Consensus 165 ~~v~~~H~d~V~~lp~g~~vlA~s~~~~i~ai~~~~~~i~GvQFHPE~~~~~~G~~ll~nFl~~i~g~~~~~~~~~~~~~ 244 (556)
T 3uow_A 165 TTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFDPIRYHEL 244 (556)
T ss_dssp EEEEEEEEEEEEECCTTCEEEEEETTEEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTCCCC-CCHHHHHHH
T ss_pred eEEEEEccceeeccCCCcEEEEEeCCCCEEEEEECCCCEEEEEcCCCCCccccchHHHHHHHHHhhcccccccccccccc
Confidence 89999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhC-CCcEEEEECchHH
Q 039743 213 EVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDL-HLPVTCVDATDQF 291 (531)
Q Consensus 213 ~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~l-gi~~~vvd~~~~f 291 (531)
.++.||++ ++.+++++|+|||+||+|+|+++++++|.+++|+|+|+|+++++|.+++.+.+|+.+ |++++++|+++.|
T Consensus 245 ~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~G~~v~~v~vd~g~~~~~e~~~~~~~~~~~l~gi~~~~vd~~~~f 323 (556)
T 3uow_A 245 ELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIFKERFFGIFIDNGLLRKNEAENVYTFLKSTFPDMNITKIDASENF 323 (556)
T ss_dssp HHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHHHHCTTSEEEEEECHHHH
T ss_pred ceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHhCCeEEEEEEecCCCChHHHHHHHHHHHHhcCCCCeEEeccHHHH
Confidence 99999998 768899999999999999999999999999999999999999999999977799999 9999999999999
Q ss_pred HHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc
Q 039743 292 LSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 292 ~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
++.+.++++|+.||+++|+.|+++|.++|++++.. ++.++|++||+|||++|+....|+ +++|++|||++++++
T Consensus 324 ~~~l~g~~~pe~kr~iig~~f~~vf~~~A~~~~~~--~~~~~la~Gt~y~D~ies~~~~g~----~~~iks~~n~~gl~~ 397 (556)
T 3uow_A 324 LSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDID--INKTFLLQGTLYPDIIESKCSKNL----SDTIKTHHNVGGLPK 397 (556)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHHHHHHHHHTTCCC--GGGEEEECCCCHHHHHHHSCC----------------------
T ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHHHHHHcCCc--ccccccccCccChHHHhhcccccc----cceeccccccccccc
Confidence 99999999999999999999999999999988720 012899999999999998765565 789999999999999
Q ss_pred ccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccc
Q 039743 372 DMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIW 451 (531)
Q Consensus 372 ~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~ 451 (531)
.+.+++++||++|+|+|||++|+++|||.+++||+||||||||+||+|++|+|+| +++++||++++++|+++|||+++|
T Consensus 398 ~~~~~li~PL~~l~K~EVr~la~~lGlp~~~~~r~P~p~p~la~Ri~g~it~e~l-~~~~~a~~~~~~~~~~~~~~~~~~ 476 (556)
T 3uow_A 398 NLKFKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFPGPGLAIRVIGEINKHKL-NILREVDDIFINDLKQYGLYNQIS 476 (556)
T ss_dssp -CCCEEECTTTTCCHHHHHHHHHTTTCCHHHHHCCCCCTTTTTTTBCSSCCHHHH-HHHHHHHHHHHHHHHHTTCGGGCS
T ss_pred ccccceEeecccCcHHHHHHHHHHcCCCHHHhCCCCCCCCCccccccCccCHHHH-HHHHHHHHHHHHHHHHcCCCCCcc
Confidence 8899999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 452 QAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 452 q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
|+|+||||+||||||||+|||+|+|+||+|+|.|||||||+++||++|++||+||+|||+||||||||||||||||||||
T Consensus 477 q~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpp~t~e~~ 556 (556)
T 3uow_A 477 QAFAVLLSSKSVGVRGDARSYDYVCVLRAVKTSSFMTANWYQIPYDILDKITTRILSEVKGVNRILYDVSSKPPATIEFE 556 (556)
T ss_dssp EEEEEEEEEEEC--------CEEEEEEEEEEESSSSCEEECCCCHHHHHHHHHHHHHHSTTEEEEEEECCCBTTSCSSCC
T ss_pred ceeEEEeCccccccCCCccCCCCeEEEeeecCCCCcccCcccCCHHHHHHHHHHHhhcCCCCCeEEeeCCCCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-132 Score=1078.54 Aligned_cols=511 Identities=48% Similarity=0.840 Sum_probs=434.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||||+||+++++|++|++|++++++|++.+.+++...++|||||||||+++++++.++..+.+++ .++|||
T Consensus 11 ~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~~~dgIILsGGp~sv~~~~~~~~~~~~~~----~~~PvL 86 (527)
T 3tqi_A 11 HRILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTLSHTLRAPAFIFE----IGCPVL 86 (527)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHHTCEEEEEETTCCSSSSTTTCCSEEEECCCCC---------CCCSTTT----SSSCEE
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHHhcCCCEEEECCcCcccccCCChhhHHHHHh----cCCCEE
Confidence 5899999999999999999999999999999988877776668899999999999998877766655544 499999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCC------ceEEEEeeccCccccCCCCcEEEEEeCCC
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVG------HHQVVWMSHGDEAVVLPDGFEVVARSQQG 159 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~------~~~~v~~~H~~~v~~lp~g~~vla~s~~~ 159 (531)
|||||||+|+.++||+|.+...++||++.+++..++++|+++++. ..+.+||+|+|.|..+|+||+++|+++++
T Consensus 87 GIC~G~Qlla~~lGG~V~~~~~~e~G~~~v~~~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~lp~g~~v~A~s~~~ 166 (527)
T 3tqi_A 87 GICYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSELPPGFEATACTDNS 166 (527)
T ss_dssp EETHHHHHHHHHSSSCBC-----CEEEEEEEESSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCSCCTTCEEEEEETTE
T ss_pred EEChHHHHHHHHcCCeEEeCCCccccceEEEEcCCChhhcCCccccccccccceEEEEEcccchhccCCCCEEEEEeCCC
Confidence 999999999999999999998899999999998888999999861 12899999999999999999999999999
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHH
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTV 239 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v 239 (531)
+++|+++.++++||+|||||+++++.|.+||+||+.++|+|+++|+|.+++++.++.+++.++ .+++++|+|||+||+|
T Consensus 167 ~i~ai~~~~~~~~GvQFHPE~~~t~~G~~ll~nF~~~i~~~~~~w~~~~~~~~~i~~i~~~v~-~~kvlvalSGGvDSsv 245 (527)
T 3tqi_A 167 PLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIEDSIRDIQEKVG-KEQVIVGLSGGVDSAV 245 (527)
T ss_dssp EEEEEECSSSCEEEESBCSSSTTSTTHHHHHHHHHHTTSCCCCCCCSHHHHHHHHHHHHHHHT-TSCEEEECTTTHHHHH
T ss_pred cEEEEEcCCCCEEEEEeccccccccccchhhhhhhhhcccccchhhHHHHHHHHHHHHHHhcC-CCeEEEEEecCcCHHH
Confidence 999999988999999999999999999999999999999999999999999999999999998 5899999999999999
Q ss_pred HHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHH
Q 039743 240 AATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAF 319 (531)
Q Consensus 240 ~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~ 319 (531)
+|+++++++|.+++|+|+|+|+++.+|.+++.+.+|+++|++++++|+++.|.+.++++++|+.+|++|++.|+++|.++
T Consensus 246 la~ll~~~~G~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~~~~~l~g~~~~~~~r~~~~~~~~~~~~~~ 325 (527)
T 3tqi_A 246 TATLVHKAIGDQLVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQ 325 (527)
T ss_dssp HHHHHHHHHGGGEEEEEECCSCSCTTHHHHHHHHHTTSSCCEEEEECCHHHHHSSSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCeEEEEEeccCCCChhHHHHHHHHHHHHcCCcEEEEeChHHHHHhhcCCCChhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999989999988779999999999999999998888899999999999999999999999
Q ss_pred HHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCC
Q 039743 320 AHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVP 399 (531)
Q Consensus 320 a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp 399 (531)
|+++| +++|++||+++|++|+..+. +|. +.++++|||++++++...+++++||.+++|+|||++|+++|+|
T Consensus 326 A~~~g------~~~la~Gh~~dD~~Et~~~~-~g~--~~~ik~~~~l~gl~~~~~~~iirPL~~l~K~EIr~~a~~lGlp 396 (527)
T 3tqi_A 326 AKKLN------VKWLGQGTIYPDVIESAKTK-TGK--GHIIKTHHNVGGLPLNMELKLIEPLRELFKDEVRKLGLELGLP 396 (527)
T ss_dssp TTTTT------CCEEECCCCHHHHHCC-----------------------------CEECTTTTCCHHHHHHHHHHHTCC
T ss_pred HHHcC------CCEEEccccCCccccccccC-CCh--hheeeeecccccCcccccCccccchhcCCHHHHHHHHHHcCCC
Confidence 99887 89999999999999986543 221 6789999999999988899999999999999999999999999
Q ss_pred ccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceeeecCCCceeeeEEEEE
Q 039743 400 EQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALR 479 (531)
Q Consensus 400 ~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr 479 (531)
.+++|++|||+|||++|++|++|++++ +.++++|++++++|++.|+|+++||+|++|+|+||||||||+|||+|+|+||
T Consensus 397 ~~~v~~~P~p~~~l~~R~~g~vt~e~l-~~~~~ae~i~~~~l~~~~l~~~~~q~~~~~~~~~~~gv~~d~r~~~~~~~~r 475 (527)
T 3tqi_A 397 ADLIYRHPFPGPGLAIRILGEVSAEYI-NILKQADAIFIEELKKSDYYHQVSQAFAVFMPLKSVGVKGDARHYGYIIALR 475 (527)
T ss_dssp HHHHTCCCCCTTGGGSSBCSCCCSHHH-HHHHHHHHHHHHHHHTTTCGGGSSEEEEEEEEEEEC--------CEEEEEEE
T ss_pred hhhhccCCCCCCCcceecCCccCHHHH-HHHHHHHHHHHHHHHHcCCccccchheeEEcCccccccCCCccccCeeEEEE
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 480 AVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 480 ~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
+|+|.|||||||+++||++|++||+||+|||+||||||||||||||||||||
T Consensus 476 ~~~~~d~m~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~kpp~tie~e 527 (527)
T 3tqi_A 476 AVKTVDFMTAQWADLPHEFLSKVSHRIVNEIKEVSRVVYDMTNKPPATIEWE 527 (527)
T ss_dssp EEC-------CBCCCCHHHHHHHHHHHHHHSSSCCCEEEECCCTTTSCSCC-
T ss_pred eecCCCcccCCcccCCHHHHHHHHHHHhhcCCCCCeEEEeCCCCCCCCcCCC
Confidence 9999999999999999999999999999999999999999999999999998
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-128 Score=1044.27 Aligned_cols=508 Identities=49% Similarity=0.838 Sum_probs=463.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||||+||+++++|+|+++|++++++|++.+.+++...++|||||||||++++++..+++.+.++ +.++|||
T Consensus 8 ~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~~~dgiILsGGp~s~~~~~~~~~~~~~~----~~g~PvL 83 (525)
T 1gpm_A 8 HRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVF----EAGVPVF 83 (525)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTCCCCCGGGG----TSSSCEE
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCEEEEEECCCCHHHHhccCCCEEEECCcCccccccCCcchHHHHH----HCCCCEE
Confidence 579999999999999999999999999999998887777555789999999999999887777776555 4599999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCC--------CceEEEEeeccCccccCCCCcEEEEEeC
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKV--------GHHQVVWMSHGDEAVVLPDGFEVVARSQ 157 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~--------~~~~~v~~~H~~~v~~lp~g~~vla~s~ 157 (531)
|||+|||+|+.++||+|.+...+++|++.+++.+++++|+++++ . +.+||+|+|.|..+|+||+++|+++
T Consensus 84 GIC~G~Qlla~~~GG~V~~~~~~e~G~~~v~~~~~~~L~~~l~~~~~~~~~~~--~~v~~~H~~~V~~lp~g~~v~A~s~ 161 (525)
T 1gpm_A 84 GVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPL--LDVWMSHGDKVTAIPSDFITVASTE 161 (525)
T ss_dssp EETHHHHHHHHHHTCEEECCSSCEEEEEEEEECSCCTTTTTCCSEECTTSCEE--EEEEEEECSEEEECCTTCEEEEECS
T ss_pred EEChHHHHHHHHcCCEEEeCCCcccceEEEEeCCCCHhhccCccccccccccc--eEEEEEccceeeeCCCCCEEEEECC
Confidence 99999999999999999999889999999999877899999987 5 8999999999999999999999999
Q ss_pred CCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCH
Q 039743 158 QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDS 237 (531)
Q Consensus 158 ~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS 237 (531)
+++++|+++.++++||+|||||+++++.|.++|+||+.++|+|+++|+|++++++.++.||++++ .+++++|+|||+||
T Consensus 162 ~~~i~ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF~~~i~~~~~~~~~~~~~~~~~~~ir~~v~-~~~vvvalSGGvDS 240 (525)
T 1gpm_A 162 SCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIREQVG-DDKVILGLSGGVDS 240 (525)
T ss_dssp SCSCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHHTTSCCCCCCCHHHHHHHHHHHHHHHHT-TCEEEEECCSSHHH
T ss_pred CCCEEEEEECCCCEEEEecCCCCCcchhHHHHHHHHHHhhhhccccchHHHHHHhhhhhhhhhhc-ccceEEEecCCCCH
Confidence 99999999988999999999999999999999999999999999999999999999999999998 58999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHH
Q 039743 238 TVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFD 317 (531)
Q Consensus 238 ~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~ 317 (531)
+|+|+++++++|.+++|+|+|+|+++.+|.+++.+.+|+.+|++++++|+++.|.+.++++++|+.+|++||+.|+++|.
T Consensus 241 sv~a~ll~~a~G~~v~av~v~~g~~~~~e~~~~~~~la~~lgi~~~~v~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~ 320 (525)
T 1gpm_A 241 SVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFD 320 (525)
T ss_dssp HHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEEeCCCCCchHHHHHHHHHHHHhCCcEEEEeccHHHHHhhcCCCChHHhhhhhhHHHHHHHH
Confidence 99999999999999999999999998888888877689999999999999998888888888999899999999999999
Q ss_pred HHHHHh-hhhcCCCCcEEEecccCCCccccCC-CCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHH
Q 039743 318 AFAHDL-EQKLGKKPAYLVQGTLYPDVIESCP-PPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRI 395 (531)
Q Consensus 318 ~~a~~~-g~~~~~~~~~l~~Gt~~~D~~es~~-~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~ 395 (531)
++|+++ | +++|++||+++|++|+.. ..+. ++++|+|||++++++...+++++||.+++|+|||++|++
T Consensus 321 ~~A~~~~g------~~~l~~Gt~~~D~~E~~~~~~~~----s~~iks~~~l~gl~~~~~~~~i~PL~~l~K~EVr~la~~ 390 (525)
T 1gpm_A 321 EEALKLED------VKWLAQGTIYPDVIESAASATGK----AHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLE 390 (525)
T ss_dssp HHHHHSSS------EEEEECCCCHHHHHHTTC--------------------------CCEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHhcCC------CCEEEeCCCCcchhhhcCccccc----cccccccccccccccccCCcEEehhhcCCHHHHHHHHHH
Confidence 999988 6 899999999999999731 2232 678999999999998888899999999999999999999
Q ss_pred cCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceeeecCCCceeeeE
Q 039743 396 LNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHV 475 (531)
Q Consensus 396 lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~ 475 (531)
+|+|.+++|++|||+|||++|++|++|+++| ..++++|.+++++|++.|+|+++||+|++|+|+||||||||+|||+|+
T Consensus 391 lglp~~i~~~~P~~~p~La~ri~g~~t~~~l-~~~~~~d~~l~~~l~~~~l~~~~~q~~~~~~~~~~~g~~~~~r~~~~~ 469 (525)
T 1gpm_A 391 LGLPYDMLYRHPFPGPGLGVRVLGEVKKEYC-DLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWV 469 (525)
T ss_dssp TTCCHHHHTSCCCCTTGGGGTBCSSCCHHHH-HHHHHHHHHHHHHHHHTTCGGGSSEEEEEEEEEEEECCTTTCCSEEEE
T ss_pred cCCCHHhcccCCCCchhhcccccCCcCHHHH-HHHHHHHHHHHHHHHHcCCchhhhhhhhhcCCcceeeecCCccccceE
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 476 VALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 476 ~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
++||+|+|+|||||+|+++||++|++||+||+|||+||||||||||||||||||||
T Consensus 470 ~~~~~~~~~d~m~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~kpp~t~e~e 525 (525)
T 1gpm_A 470 VSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEWE 525 (525)
T ss_dssp EEEEEEEEEETTEEEECCCCHHHHHHHHHHHHHHSTTEEEEEEECCCBTTSCSSCC
T ss_pred EEEEEEcccccccCCcccCCHHHHHHHHHHHHhcCCCcceEEeeCCCCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-126 Score=1028.27 Aligned_cols=502 Identities=50% Similarity=0.846 Sum_probs=447.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLG 86 (531)
||+|||||+||+++++|+++++|++++++|++.+.+++...++|||||||||++++++..+++.+.++ +.++||||
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~~~~~~i~~~~~dgiIlsGGp~s~~~~~~~~~~~~~~----~~~~PvLG 76 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLF----SSGLPLLG 76 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTCCCCCGGGG----CSSCCEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHCCCEEEEEECCCCHHHHHhcCCCEEEECCCCchhccCCCcchHHHHH----hCCCCEEE
Confidence 39999999999999999999999999999998887777656789999999999999887788776555 45999999
Q ss_pred eeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEEE
Q 039743 87 ICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVEN 166 (531)
Q Consensus 87 IC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~ 166 (531)
||+|||+|++++||+|.+...+++|++.+++.. +++|+++++. +.+||+|+|.|..+|+|++++|++++++++|+++
T Consensus 77 IC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~-~~l~~~~~~~--~~v~~~H~~~v~~lp~g~~v~A~s~~~~i~ai~~ 153 (503)
T 2ywb_A 77 ICYGMQLLAQELGGRVERAGRAEYGKALLTRHE-GPLFRGLEGE--VQVWMSHQDAVTAPPPGWRVVAETEENPVAAIAS 153 (503)
T ss_dssp ETHHHHHHHHTTTCEEECC---CEEEEECSEEC-SGGGTTCCSC--CEEEEECSCEEEECCTTCEEEEECSSCSCSEEEC
T ss_pred ECHHHHHHHHHhCCeEeeCCCCccceEEEEecC-cHHhhcCCCc--cEEEEECCCccccCCCCCEEEEEECCCCEEEEEe
Confidence 999999999999999999988999999998877 8899999877 8999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHH
Q 039743 167 REKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHK 246 (531)
Q Consensus 167 ~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k 246 (531)
+++++||+|||||+++++.|.++|+||+ ++|+++++|+|.+++++.++.++++++ ++++++|+|||+||+|+|+++++
T Consensus 154 ~~~~~~gvQFHPE~~~~~~g~~ll~~F~-~~~~~~~~~~~~~~~~~~i~~ir~~~~-~~kvvvalSGGvDSsvla~ll~~ 231 (503)
T 2ywb_A 154 PDGRAYGVQFHPEVAHTPKGMQILENFL-ELAGVKRDWTPEHVLEELLREVRERAG-KDRVLLAVSGGVDSSTLALLLAK 231 (503)
T ss_dssp TTSSEEEESBCTTSTTSTTHHHHHHHHH-HHTTCCCCCCHHHHHHHHHHHHHHHHT-TSEEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCcccccccHHHHHHHH-HHhhhhccccchhhhHHHHHhhhhhcc-CccEEEEecCCcchHHHHHHHHH
Confidence 8899999999999999999999999999 999999999999999999999999997 58999999999999999999999
Q ss_pred HhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHh-hh
Q 039743 247 AIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDL-EQ 325 (531)
Q Consensus 247 ~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~-g~ 325 (531)
+ |.+++|+|+|+|+++++|.+.+.+ +|+++|++++++++++.|.+.+.++++|+.+|++||+.|+++|.+.|+++ |
T Consensus 232 ~-g~~v~av~vd~g~~~~~e~~~v~~-~~~~lgi~~~vv~~~~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g- 308 (503)
T 2ywb_A 232 A-GVDHLAVFVDHGLLRLGEREEVEG-ALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGP- 308 (503)
T ss_dssp H-TCEEEEEEEECSCSCTTHHHHHHH-HHHHTTCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred c-CCeEEEEEEeCCCCChHHHHHHHH-HHHHhCCCEEEEECcHHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCC-
Confidence 9 999999999999998888888877 78889999999999998888888888999899999999999999999988 6
Q ss_pred hcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCcccccc
Q 039743 326 KLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKR 405 (531)
Q Consensus 326 ~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~ 405 (531)
+++|++||+++|++|+..+ |. ++++|+|+|++++++...+++++||.+++|+|||++++++|+|..++|+
T Consensus 309 -----~~~la~G~~~~D~~Et~~~-g~----~~~iks~~~l~~l~~~~~~~ii~PL~~l~K~EVr~~a~~~glp~~i~~~ 378 (503)
T 2ywb_A 309 -----FRFLAQGTLYPDVIESAGG-HG----AAKIKSHHNVGGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRLR 378 (503)
T ss_dssp -----CSEEECCCCHHHHHC----------------------CCCSSCCCEEECTTTTCCHHHHHHHHHHTTCCHHHHSC
T ss_pred -----CCEEEECCcCccchhhccC-Cc----ccccccccccccccccccCceEehhhcCCHHHHHHHHHHcCCChhheec
Confidence 8999999999999997543 43 6789999999999988888999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecCC
Q 039743 406 HPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQD 485 (531)
Q Consensus 406 ~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d 485 (531)
+|||+|||++|++|++|++++ +.++++|++++++|++.|+|+++||+|++|+|+||||||||+|||+|+++||+|+|.|
T Consensus 379 ~P~~~~~La~R~~g~~t~~~l-~~~~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~~g~~gd~r~~~~~~~~~~~~~~~ 457 (503)
T 2ywb_A 379 HPFPGPGLAVRVLGEVTEERL-EILRRADDIFTSLLREWGLYEKVAQALAVLTPVRSVGVAGDERKYGYVLALRAVTTED 457 (503)
T ss_dssp CCCCTTGGGGGBSSCCCHHHH-HHHHHHHHHHHHHHHHHTCGGGSSEEEEEEEEC------------CEEEEEEEEECSS
T ss_pred CCCCCcchhhhccccccHHHH-HHHHHHHHHHHHHHHhcccccccchheeeecCcceeeccCCccccceeEEEEEeccCC
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 486 GMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 486 ~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
||||||+++||++|++||+||+|||+||||||||||||||||||||
T Consensus 458 ~~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~kpp~t~e~e 503 (503)
T 2ywb_A 458 FMTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503 (503)
T ss_dssp SSCBEECCCCHHHHHHHHHHHHHHCTTCCEEEEECCCBTTSCSSCC
T ss_pred ccccCccCCCHHHHHHHHHHHHhcCCCcceEEeeCCCCCCCCcCCC
Confidence 9999999999999999999999999999999999999999999999
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-116 Score=970.48 Aligned_cols=505 Identities=39% Similarity=0.630 Sum_probs=444.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||||+||+++++|+++++|++++++|++.+.+++...++|||||||||+++++++.+++.+.+++ .++|||
T Consensus 30 ~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~~~~e~i~~~~~dGIILsGGp~s~~~~~~~~~~~~i~~----~g~PvL 105 (697)
T 2vxo_A 30 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFT----IGKPVL 105 (697)
T ss_dssp CCEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------CCCCCGGGTT----SSCCEE
T ss_pred CEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCHHHHhhcCCCEEEECCCCCcccCccchhHHHHHHh----CCCCEE
Confidence 4799999999999999999999999999999998887776678999999999999998877887766554 599999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE 165 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~ 165 (531)
|||+|||+|+.++||+|.+...+++|++.+++..++++|+++++. +.+|++|+|.|..+|+|++++|.+++ .++|++
T Consensus 106 GIC~G~QlLa~~lGG~v~~~~~~e~G~~~v~~~~~~~Lf~~l~~~--~~v~~~H~~~V~~lp~g~~vlA~s~~-~i~ai~ 182 (697)
T 2vxo_A 106 GICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKE--EVVLLTHGDSVDKVADGFKVVARSGN-IVAGIA 182 (697)
T ss_dssp EEEHHHHHHHHHTTCCBCC-------CEEEEECTTSGGGTTCCSE--EEECCCSSCCBSSCCTTCEEEEEETT-EEEEEE
T ss_pred EECHHHHHHHHHhCCeEeecCCCccceEEEEecCCChhhhcCCcc--CcceeecccceecCCCCeEEEEEeCC-ceEEEE
Confidence 999999999999999999988899999999998888999999877 89999999999999999999999966 999999
Q ss_pred ECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHH
Q 039743 166 NREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVH 245 (531)
Q Consensus 166 ~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~ 245 (531)
+.++++||+|||||+++++.|.+||+||++++|+|+++|+|+++.++.++.||++++ .+++++|+|||+||+|+|++++
T Consensus 183 ~~~~~i~GvQFHPE~~~t~~g~~ll~nFl~~i~~~~~~~~~~~~~~~~i~~Ir~~v~-~~~vvv~lSGGvDSsVla~Ll~ 261 (697)
T 2vxo_A 183 NESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLN 261 (697)
T ss_dssp ETTTTEEEESSCTTSSSSTTHHHHHHHHHTTTTCCCSCCCHHHHHHHHHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHH
T ss_pred eCCCCEEEEEecccCCCCccchhhhhhhhhccccccccchhhHHHHHHHHHHHHHhc-ccceEEEccCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997 6899999999999999999999
Q ss_pred HHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHh--------------------hcCCCCcccc
Q 039743 246 KAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSK--------------------LKGVIDPETK 304 (531)
Q Consensus 246 k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~--------------------l~~~~~p~~k 304 (531)
+++| .+++|+|+|+|+++++|.+.+.+ +|+++|++++++|+++.|... +.++.+|+.|
T Consensus 262 ~alG~~~V~aV~vd~g~~~~~e~e~a~~-~a~~lGI~~~vvdi~~~f~~~~~~l~~~~~~~~Y~~g~~~~l~~v~~~~~k 340 (697)
T 2vxo_A 262 RALNQEQVIAVHIDNGFMRKRESQSVEE-ALKKLGIQVKVINAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEK 340 (697)
T ss_dssp HHSCGGGEEEEEEECSCCCSSTTHHHHH-HHHHTTCCEEEEECHHHHHTCCCBCC----------CBCCCGGGCCCHHHH
T ss_pred HhcCCceEEEEEeccccCCcchHHHHHH-HHHHhCCcEEEecchHHHHhhhhhhcccccccchhcccCcCcccccCHHHH
Confidence 9999 99999999999998888888876 889999999999999877552 3345567778
Q ss_pred cchhhHHHHHHHHHHHHHhhhhcCCCCc----EEEecccCCCccccCCC--CCCCCCcccccccccccCCCCccc--ccc
Q 039743 305 RKIIGKEFICIFDAFAHDLEQKLGKKPA----YLVQGTLYPDVIESCPP--PGTGRTHSHTIKSHHNVGGLPKDM--KLK 376 (531)
Q Consensus 305 r~~~~~~~~~~~~~~a~~~g~~~~~~~~----~l~~Gt~~~D~~es~~~--~g~g~~~~~~ikt~~~~~~l~~~~--~~~ 376 (531)
|+++|+.|+++++++|+++| ++ +|++||+++|++|+... .+. +..+++|||+++++... ..+
T Consensus 341 R~iig~~~~~v~~~~A~~~g------~~~~~~~LatG~~~~D~iEs~~~~l~~g----~~~iks~~nv~g~~~~~~~~~~ 410 (697)
T 2vxo_A 341 RKIIGDTFVKIANEVIGEMN------LKPEEVFLAQGTLRPDLIESASLVASGK----AELIKTHHNDTELIRKLREEGK 410 (697)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------CCTTSEEEECCCSSCCSBCCHHHHHHSC----CCGGGSCCSSCHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHHHcC------CCcccEEEEEeccChhhhhhhhhhhhcC----ccccccccccchhhHHhccCCE
Confidence 99999999999999999987 55 99999999999997432 122 56799999999987654 367
Q ss_pred eecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcc------hHHHHHhhhhHHHHHHH-HHcCcccc
Q 039743 377 LIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEG------NSLDILRQVDEIFIQSI-KEAGLYDL 449 (531)
Q Consensus 377 ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~------~l~~~~~~~d~~~~~~l-~~~~~~~~ 449 (531)
+++||++++|+|||++|+++|+|.++++++|||||||++|+.++.+++ .+-++++.++. .+++| ++.|+|++
T Consensus 411 ~i~PL~~L~K~EVr~la~~lGlP~~i~~r~Ps~gpgL~~r~~~~de~~~g~~Y~~ld~iL~~~~~-~~~el~~~~g~~~~ 489 (697)
T 2vxo_A 411 VIEPLKDFHKDEVRILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVAD-FSASVKKPHTLLQR 489 (697)
T ss_dssp EECGGGGSCHHHHHHHHHHTTCCHHHHTCCCCCTTGGGGGBCCBSSCCCCTTHHHHHHHHHHHHT-HHHHTTSCCHHHHH
T ss_pred EEEecccCCHHHHHHHHHHcCCCcceeeCCCCCCCccccCccccchhhhcCCHHHHHHHHHHHhh-hHHHHHHhhChHHH
Confidence 999999999999999999999999999999999999999987665443 34357888888 77888 77888888
Q ss_pred c------------------ccceeeecCcceeeecCCCceeeeEEEE---------------------------------
Q 039743 450 I------------------WQAFAVFLPVRSVGVQGDQRTHSHVVAL--------------------------------- 478 (531)
Q Consensus 450 ~------------------~q~~~vllp~~~~gv~gd~r~~~~~~~l--------------------------------- 478 (531)
+ ||+|++|||+||||||||+|||+|+++|
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~svgv~gd~r~y~~~~~l~~~~~~~w~~~~~~~~~i~~~~~~~nrv~~~~~ 569 (697)
T 2vxo_A 490 VKACTTEEDQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVCGISSKDEPDWESLIFLARLIPRMCHNVNRVVYIFG 569 (697)
T ss_dssp HHHHSCHHHHHHHHHHHHHSCEEEEEEEEEEEEEETTEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHBTTEEEEEEECS
T ss_pred HhhhhcchhhhhhhccccccceeEEecCCceeeeCCCCccccceEEEecCCCCchHHHHHHHhhcchhccccceeEeecC
Confidence 8 6999999999999999999999999999
Q ss_pred ------------------------------------------------------------------------EeeecCCC
Q 039743 479 ------------------------------------------------------------------------RAVTSQDG 486 (531)
Q Consensus 479 ------------------------------------------------------------------------r~~~~~d~ 486 (531)
|+|+|+||
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~lr~~d~~~~~~l~~~~~~~~~~q~~vv~~p~~~~~~~~~~~~~~~~~v~~r~~~~~d~ 649 (697)
T 2vxo_A 570 PPVKEPPTDVTPTFLTTGVLSTLRQADFEAHNILRESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRSVVIRTFITSDF 649 (697)
T ss_dssp SCCSSCCSSCCCBCSCHHHHHHHHHHHHHHHHHHHHTTCGGGCSBCCEEEESCCCCCCGGGTCCCCCEEEEECCBBCSSS
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHHhcccceeeeEEEEEEEeeecCCCccccCCccceeEEEEEEcccCC
Confidence 99999999
Q ss_pred cccccc----cccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 487 MTADWY----YFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 487 mt~~~~----~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
|||+|+ +||+++|++|++|| |+|||||||+||||||||||||||
T Consensus 650 mt~~~~~~~~~~p~~~l~~~~~~i-~~~~~i~rv~yd~t~kpp~t~ewe 697 (697)
T 2vxo_A 650 MTGIPATPGNEIPVEVVLKMVTEI-KKIPGISRIMYDLTSKPPGTTEWE 697 (697)
T ss_dssp SSBBCCCBTTTBCHHHHHHHHHHH-HHSTTEEEEEEECCCBTTSCSSCC
T ss_pred ceeeecCcCCCCCHHHHHHHHHHH-hccCCcceEEccCCCCCCCCccCC
Confidence 999999 99999999999999 999999999999999999999999
|
| >2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-78 Score=613.67 Aligned_cols=308 Identities=51% Similarity=0.819 Sum_probs=274.5
Q ss_pred ccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 204 WKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 204 w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
|+|++++++.++.|+++++ +++++|++|||+||+++|+++++++|.+++|+|+|+|+.+.+|.+.+.+.+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~g~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~ 79 (308)
T 2dpl_A 1 MDWGRFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLH 79 (308)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCCCTTHHHHHHHHHTTTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhhCCCEEEEEEcCCCCChHHHHHHHHHHHHHcCCcEE
Confidence 5788899999999999998 689999999999999999999999899999999999998888888887767778999999
Q ss_pred EEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
++++++.|.+.+.+..+|+.+|++||+.+++++.+.|+++| +++|++||+++|++|+. + .++++
T Consensus 80 vv~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g------~~~la~Gh~~dD~~Et~----~------~iks~ 143 (308)
T 2dpl_A 80 YVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIG------AEYLIQGTIAPDWIESQ----G------KIKSH 143 (308)
T ss_dssp EEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHT------CSEEECCCCCC----------------------
T ss_pred EEECCHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcC------cCEEEECCCCccchhhc----c------chhhh
Confidence 99999888888888888988898999999999999999998 89999999999999962 2 56889
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHHHHH
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKE 443 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~ 443 (531)
+++++++...++++++||.+++|+||+++++++|+|..++|++|||+|||++|++|++|++++ +.++++|+++++++++
T Consensus 144 ~~~~~l~~~~~~~virPL~~l~K~EI~~~a~~~glp~~i~~~~P~~~~~La~R~~g~~t~~~l-~~~r~~~~~l~~~~~~ 222 (308)
T 2dpl_A 144 HNVGGLPEKLNLKLIEPLRDLYKDEVRELAKFLGLPEKIYNRMPFPGPGLAVRVIGEVTPEKI-RIVREANAIVEEEVER 222 (308)
T ss_dssp ---------CCCEEECTTTTCCHHHHHHHHHHTTCCHHHHTCCCCCTTGGGGGBSSSCCHHHH-HHHHHHHHHHHHHHHH
T ss_pred hccccCCccCCCeEEEEcccCCHHHHHHHHHHhCCCceeeecCCCCcccccccccCcccHHHH-HHHHHHHHHHHHHHHH
Confidence 999899887788999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCcccccccccHHHHHHHHHHHHcCCCCcccEEEecCCC
Q 039743 444 AGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSK 523 (531)
Q Consensus 444 ~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k 523 (531)
. |.++||+|++|+|+++|||+||.|+|+|+++||+|+|.|||||+|+++||++|++||+||+|+||||||||||||||
T Consensus 223 ~--~~~~~~~~~~l~~v~~~~~~gd~r~y~~~~~~r~~~~~d~mt~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~k 300 (308)
T 2dpl_A 223 A--GLRPWQAFAVLLGVKTVGVQGDIRAYKETIAVRIVESIDGMTANAMNVPWEVLQRIAFRITSEIPEVGRVLYDITNK 300 (308)
T ss_dssp T--TCCCSEEEEEECCCCEEEESSSSEEEEEEEEEEEEECSSSSSBEECCCCHHHHHHHHHHHHHHCTTEEEEEEECCCB
T ss_pred H--hhccceeeEEecCceeeeecCCcccccceEEEEEEccCccccCCcccCCHHHHHHHHHHHHhcCCCcceEEeeCCCC
Confidence 7 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccC
Q 039743 524 PPSTIEWE 531 (531)
Q Consensus 524 ~p~~~~~~ 531 (531)
||||||||
T Consensus 301 pp~t~e~~ 308 (308)
T 2dpl_A 301 PPATIEFE 308 (308)
T ss_dssp TTBCSSCC
T ss_pred CCCCCCCC
Confidence 99999998
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=323.67 Aligned_cols=194 Identities=38% Similarity=0.636 Sum_probs=168.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||+|++|+++++++|+++|++++++|++.+.+++...++|||||||||+++++...+++.+.++ ++++|+|
T Consensus 25 ~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~~~~l~~~~~dglil~Gg~~~~~~~~~~~~~~~~~----~~~~Pil 100 (218)
T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIF----TIGKPVL 100 (218)
T ss_dssp TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC---------CCCCCGGGG----TSSCCEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChHHHhhcCCCEEEECCCCcccccccchhHHHHHH----HcCCCEE
Confidence 579999999999999999999999999999998776666556799999999999888665666655443 4599999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVE 165 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~ 165 (531)
|||+|||+|+.++||+|.+.+.+++|++.+++++++++++++++. +.++++|++.|..+|++++++|.+ ++.++|++
T Consensus 101 GIC~G~Qll~~~~GG~v~~~~~~~~G~~~v~~~~~~~l~~~l~~~--~~v~~~H~~~v~~l~~~~~vlA~s-~~~i~ai~ 177 (218)
T 2vpi_A 101 GICYGMQMMNKVFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKE--EVVLLTHGDSVDKVADGFKVVARS-GNIVAGIA 177 (218)
T ss_dssp EETHHHHHHHHHTTCCEEEEEECSCEEEEEEECTTSGGGTTCCSE--EEEEECSEEEESSCCTTCEEEEEE-TTEEEEEE
T ss_pred EEcHHHHHHHHHhCCceEeCCCCcccEEEEEEccCChhHhcCCCC--cEEeehhhhHhhhcCCCCEEEEEc-CCeEEEEE
Confidence 999999999999999999988889999999998888999999877 899999999999999999999999 56999999
Q ss_pred ECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccc
Q 039743 166 NREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKL 206 (531)
Q Consensus 166 ~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~ 206 (531)
+.++++||+|||||++.++.|.+||+||+.++|+++++|+|
T Consensus 178 ~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~~~~~~~w~~ 218 (218)
T 2vpi_A 178 NESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTV 218 (218)
T ss_dssp ETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTCCCCCCCC
T ss_pred ECCCCEEEEEcCCCCCCChhHHHHHHHHHHHHhCCCCCCCC
Confidence 98889999999999998888999999998899999999986
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=309.07 Aligned_cols=198 Identities=26% Similarity=0.465 Sum_probs=174.1
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCC-CCCCCCCCCCCChHHHHHHHHhCCC
Q 039743 4 KPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGG-PHSVHSPDAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 4 ~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGG-p~s~~~~~~~~~~~~l~~~~~~~~i 82 (531)
.|++|+++|+|++|+++++++|+++|+.+++++++.+.+++ .++|||||||| |+++++.. -...+.+.+.++++
T Consensus 12 ~~~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~l--~~~DglIl~GG~p~~~~~~~---~~~~l~~~~~~~~~ 86 (212)
T 2a9v_A 12 HMLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSEL--DGLDGLVLSGGAPNIDEELD---KLGSVGKYIDDHNY 86 (212)
T ss_dssp CCCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGG--TTCSEEEEEEECSCGGGTGG---GHHHHHHHHHHCCS
T ss_pred ccceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCCCHHHH--hCCCEEEECCCCCCCCcccc---cchhHHHHHHhCCC
Confidence 46789999999999999999999999999999987665555 45999999999 88887651 12334555667899
Q ss_pred cEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEE
Q 039743 83 YVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVA 162 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ 162 (531)
|+||||+|||+|+.++||+|.+.+.+++|++.+++.+++++++++++. +.++++|++.+.++|++++++|.++++.++
T Consensus 87 PiLGIC~G~Qll~~~lGg~v~~~~~~~~G~~~v~~~~~~~l~~~~~~~--~~v~~~H~~~v~~l~~~~~vlA~s~d~~i~ 164 (212)
T 2a9v_A 87 PILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSENIFGGLPSE--ITVWENHNDEIINLPDDFTLAASSATCQVQ 164 (212)
T ss_dssp CEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEESCCCGGGTTCCSE--EEEEEEEEEEEESCCTTEEEEEECSSCSCS
T ss_pred CEEEEChHHHHHHHHhCCEEEcCCCcccCceeeEECCCChhHhcCCCc--eEEEeEhhhhHhhCCCCcEEEEEeCCCCEE
Confidence 999999999999999999999988789999999998888999999877 899999999999999999999999999999
Q ss_pred EEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccccccccch
Q 039743 163 AVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLENV 209 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~~w~~~~~ 209 (531)
|++++++++||+|||||++.++.|.+||++|+ ++|+....|++++|
T Consensus 165 ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~-~~~~~~~~~~~~~~ 210 (212)
T 2a9v_A 165 GFYHKTRPIYATQFHPEVEHTQYGRDIFRNFI-GICASYREIQKENF 210 (212)
T ss_dssp EEEESSSSEEEESSCTTSTTSTTHHHHHHHHH-HHHHHHHHHHHC--
T ss_pred EEEECCCCEEEEEeCCCCCCCccHHHHHHHHH-HHHHHhhhccHhhc
Confidence 99998789999999999998888999999998 78988888888765
|
| >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-37 Score=289.90 Aligned_cols=186 Identities=20% Similarity=0.307 Sum_probs=158.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
++|+|||++++|++.++++|+++|+++++++.+. +.+++...++|||||||||+++++........++++.+ +.++|+
T Consensus 2 ~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~~Pv 80 (195)
T 1qdl_B 2 DLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYL-GKRTPI 80 (195)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTTSCE
T ss_pred CEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHh-cCCCcE
Confidence 3599999999999999999999999999999863 44455334799999999999876532112344677764 779999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccce-eeeEEEecCC--ccccCCCCCceEEEEeeccCccccCCCCcEEEEEe-CCCc
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYG-RMEILVERSS--GIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARS-QQGA 160 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G-~~~v~~~~~~--~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s-~~~~ 160 (531)
||||+|||+|+.++||+|.+.+..++| +..++.++++ ++++++++. +.++++|++.|.++|++++++|++ ++|.
T Consensus 81 LGIC~G~QlL~~~~gg~v~~~~~~~~g~~~~v~~~~~~~~~l~~~~~~~--~~v~~~H~~~v~~l~~~~~vla~s~~~g~ 158 (195)
T 1qdl_B 81 LGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKE--FKATRYHSLVVDEVHRPLIVDAISAEDNE 158 (195)
T ss_dssp EEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEEECCSSCCSTTTTCCSE--EEEEEEEEEEEECCCTTEEEEEEESSSCC
T ss_pred EEEehHHHHHHHHhCCEEeccCCCcCCCceEEEECCCCHhHHHhcCCCc--eEEeccccchhhhCCCCcEEEEEECCCCc
Confidence 999999999999999999988666666 5667776667 899999877 999999999999999999999999 8999
Q ss_pred EEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 161 VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 161 v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++|+++.++++||+|||||++.++.|.+||+||+
T Consensus 159 i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~ 192 (195)
T 1qdl_B 159 IMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFL 192 (195)
T ss_dssp EEEEEESSSSEEEESSBTTSTTCTTHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEecCCCCCCCccHHHHHHHHH
Confidence 9999998778999999999999889999999997
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=285.54 Aligned_cols=186 Identities=38% Similarity=0.637 Sum_probs=161.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEE
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLG 86 (531)
+|+|||+|++|.+++.++|+++|+.+++++.+.+.+++...++||||||||| ++.+ .....++++.+.++++|+||
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dglil~Gg~-~~~~---~~~~~~~i~~~~~~~~PilG 77 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGP-SLEN---TGNCEKVLEHYDEFNVPILG 77 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCS-CTTC---CTTHHHHHHTGGGTCSCEEE
T ss_pred eEEEEECCCchHHHHHHHHHHCCCeEEEEECCCChHHhcccCCCEEEECCCC-Chhh---hhhHHHHHHHHhhCCCeEEE
Confidence 5999999999999999999999999999998776655544579999999998 5433 23345666666578999999
Q ss_pred eeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEEEE
Q 039743 87 ICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVEN 166 (531)
Q Consensus 87 IC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai~~ 166 (531)
||+|||+|+.++||+|.+.+.+++|+..+.+...+++|+++++. +.++++|++.+.++|++++++|.++++.++|+++
T Consensus 78 IC~G~Q~l~~~~gg~v~~~~~~~~G~~~~~~~~~~~l~~~~~~~--~~~~~~h~~~v~~l~~~~~vla~s~~g~i~a~~~ 155 (189)
T 1wl8_A 78 ICLGHQLIAKFFGGKVGRGEKAEYSLVEIEIIDEXEIFKGLPKR--LKVWESHMDEVKELPPKFKILARSETCPIEAMKH 155 (189)
T ss_dssp ETHHHHHHHHHHTCEEEECSCCSCEEEEEEESCC--CCTTSCSE--EEEEECCSEEEEECCTTEEEEEEESSCSCSEEEE
T ss_pred EcHHHHHHHHHhCCceecCCCcccCceeEEEecCchHHhCCCCc--eEEEEEeeeehhhCCCCcEEEEEcCCCCEEEEEe
Confidence 99999999999999999987789999998887777899988877 8999999999989999999999999999999999
Q ss_pred CCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 167 REKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 167 ~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
.++++||+|||||++.++.|.++|++|+ +.|+
T Consensus 156 ~~~~~~gvQfHPE~~~~~~g~~l~~~f~-~~~~ 187 (189)
T 1wl8_A 156 EELPIYGVQFHPEVAHTEKGEEILRNFA-KLCG 187 (189)
T ss_dssp SSSCEEEESSCTTSTTSTTHHHHHHHHH-HHHC
T ss_pred CCceEEEEecCCCcCCCcchHHHHHHHH-HHHh
Confidence 8777999999999998888999999998 6663
|
| >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=280.24 Aligned_cols=185 Identities=22% Similarity=0.307 Sum_probs=151.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhcccc----CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITA----KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~----~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
.+|+|||++++|+++++++|+++|+++++++++.+.+++.. .+.+++||+|||+++.+. .....+++. .+++
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~~---~~~~~l~~~-~~~~ 76 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEA---GCMPELLTR-LRGK 76 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGS---TTHHHHHHH-HBTT
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchhC---chHHHHHHH-HhcC
Confidence 37999999999999999999999999999998866555421 245679999999987653 235567765 5679
Q ss_pred CcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcE
Q 039743 82 VYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAV 161 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v 161 (531)
+|+||||+|||+|+.++||++.+....++|.........+++|+++++. +.++++|++.+..+|++++++|.+ ++.+
T Consensus 77 ~PilGIC~G~Qll~~~~Gg~v~~~~~~~~g~~~~~~~~~~~l~~~~~~~--~~v~~~H~~~v~~lp~~~~v~a~~-~~~~ 153 (192)
T 1i1q_B 77 LPIIGICLGHQAIVEAYGGYVGQAGEILHGKATSIEHDGQAMFAGLANP--LPVARYHSLVGSNVPAGLTINAHF-NGMV 153 (192)
T ss_dssp BCEEEETHHHHHHHHHTSCCCCC---CCSSEEEEEEECCCGGGTTSCSS--EEEEECCC---CCCCTTCEEEEEE-TTEE
T ss_pred CCEEEECcChHHHHHHhCCEEEeCCCcEecceeEEecCCChHHhcCCCC--cEEEechhhHhhhCCCccEEEECC-CCcE
Confidence 9999999999999999999998776677887765545566899999887 999999999999999999999965 4678
Q ss_pred EEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 162 AAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 162 ~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+|+++.++++||+|||||+++++.|.++|+||+ +.|
T Consensus 154 ~ai~~~~~~~~gvQfHPE~~~~~~g~~il~nf~-~~~ 189 (192)
T 1i1q_B 154 MAVRHDADRVCGFQFHPESILTTQGARLLEQTL-AWA 189 (192)
T ss_dssp EEEEETTTTEEEESSBTTSTTCTTHHHHHHHHH-HHH
T ss_pred EEEEECCCCEEEEEccCcccCCcccHHHHHHHH-HHH
Confidence 999998899999999999998899999999998 443
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=271.42 Aligned_cols=179 Identities=21% Similarity=0.312 Sum_probs=152.0
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCC---CCCCCCC-CCC----------hHHHHHHHHhCC
Q 039743 18 THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPH---SVHSPDA-PAF----------PAGFLEWALSNG 81 (531)
Q Consensus 18 ~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~---s~~~~~~-~~~----------~~~l~~~~~~~~ 81 (531)
.+.+.++|+++|+.++++|+..+.+ +. +.++|||||||||+ +.|++.. ++. ...+++.+.+++
T Consensus 30 ~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~ 108 (254)
T 3fij_A 30 QQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAG 108 (254)
T ss_dssp CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcC
Confidence 3568999999999999999876543 32 45799999999987 4565532 221 346788888899
Q ss_pred CcEEEeeHHHHHHHHHcCCEEeec--------------CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCC
Q 039743 82 VYVLGICYGLQLMVQKLDGVVKVG--------------EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLP 147 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~GG~v~~~--------------~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp 147 (531)
+||||||+|||+|+.++||++.+. ..+++|++.+++.+++++++.+++. +.++++|++.|.++|
T Consensus 109 ~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~~s~l~~~~~~~--~~v~~~H~~~v~~l~ 186 (254)
T 3fij_A 109 KPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNK--KLVNSLHHQFIKKLA 186 (254)
T ss_dssp CCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEECTTSSGGGTCCTT--EEECCBCSCEESSCC
T ss_pred CCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeCCCChHHHhcCCc--EEEEEeccchhhccC
Confidence 999999999999999999999764 1356899999999889999998887 999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEEC-CCc-EEEEecCCCCCCC--cccchhhhhheeccccc
Q 039743 148 DGFEVVARSQQGAVAAVENR-EKR-LFGLQYHPEVTHS--PEGMETLRYFLFDVCGV 200 (531)
Q Consensus 148 ~g~~vla~s~~~~v~ai~~~-~~~-i~gvQFHPE~~~~--~~g~~i~~~F~~~~~~~ 200 (531)
++++++|+++++.++|+++. +++ ++|+|||||++.+ +.|.+||+||+ ++|+.
T Consensus 187 ~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv-~~~~~ 242 (254)
T 3fij_A 187 PSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALV-DESKK 242 (254)
T ss_dssp SSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHH-HHHHS
T ss_pred CCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHH-HHHHH
Confidence 99999999999999999998 776 9999999999975 57899999998 87764
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-32 Score=298.11 Aligned_cols=185 Identities=16% Similarity=0.171 Sum_probs=158.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCCh--HHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFP--AGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~--~~l~~~~~~~~iP 83 (531)
++|+|+|+|++|+++++++++++|+++++++++.+.+ ..++|||||||||+++++...+|+. .++++.+.+.++|
T Consensus 447 k~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~~~---~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iP 523 (645)
T 3r75_A 447 CRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVD---LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKP 523 (645)
T ss_dssp CEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCCCC---GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCccc---ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCC
Confidence 4799999999999999999999999999999876532 3578999999999999887655654 3677888888999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAA 163 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~a 163 (531)
|||||+|||+|+.++||+|.+...+++|+.......+++++.+++.. +.++++|.+.+..+|++++++|.+++|.++|
T Consensus 524 iLGIClG~QlLa~alGG~V~~~~~~~~G~~~~i~~~~~~l~~~~~~~--~~v~~~h~~~~~~lp~g~~v~A~s~dg~i~A 601 (645)
T 3r75_A 524 FMAVCLSHQILNAILGIPLVRREVPNQGIQVEIDLFGQRERVGFYNT--YVAQTVRDEMDVDGVGTVAISRDPRTGEVHA 601 (645)
T ss_dssp EEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEE--EEEBCSCSEEEETTTEEEEEEECTTTCBEEE
T ss_pred EEEECHHHHHHHHHhCCEEEcCCCcccccceEEeeecCcceecCCCc--EEEEEehhhccccCCCCeEEEEEcCCCcEEE
Confidence 99999999999999999999988788887654333456777777766 8888888776667999999999999999999
Q ss_pred EEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 164 VENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 164 i~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+++. ++||+|||||+.+++.|.+||+||+ +.|
T Consensus 602 i~~~--~~~GVQFHPE~~~t~~G~~Ll~nFl-~~~ 633 (645)
T 3r75_A 602 LRGP--TFSSMQFHAESVLTVDGPRILGEAI-THA 633 (645)
T ss_dssp EEET--TEEEESSBTTSTTCTTHHHHHHHHH-HHH
T ss_pred EEcC--CEEEEEeCCeecCCcchHHHHHHHH-HHH
Confidence 9985 4799999999999999999999998 443
|
| >4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-33 Score=270.71 Aligned_cols=182 Identities=19% Similarity=0.291 Sum_probs=135.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCC-hHHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAF-PAGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~-~~~l~~~~~~~~iPv 84 (531)
++|+|||||++|.+++.++|+++|++++++. +.+++ .++||||||||.++.... ..+ ...+++.+.+.++||
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~---~~~~l--~~~D~lilPG~g~~~~~~--~~~~~~~~i~~~~~~~~Pv 75 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISR---DPQVV--LAADKLFLPGVGTASEAM--KNLTERDLIELVKRVEKPL 75 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEEC---CHHHH--HHCSEEEECCCSCHHHHH--HHHHHTTCHHHHHHCCSCE
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEEC---CHHHH--hCCCEEEECCCCCHHHHH--HHHHhcChHHHHHHcCCCE
Confidence 3599999999999999999999999999864 33444 457999999865421100 000 012355566779999
Q ss_pred EEeeHHHHHHHHHcCCEEeecC----------------------cccceeeeEEEecCCccccCCCCCceEEEEeeccCc
Q 039743 85 LGICYGLQLMVQKLDGVVKVGE----------------------KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDE 142 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~----------------------~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~ 142 (531)
||||+|||+|+.++|+.+.+.. ..+.++..+.....++++++++.. ..+|++|++.
T Consensus 76 lGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~H~~~ 153 (211)
T 4gud_A 76 LGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQVKEGHPLFNGIEPD--AYFYFVHSFA 153 (211)
T ss_dssp EEETHHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEECTTCGGGTTCCTT--CCEEEEESEE
T ss_pred EEEchhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccceeeeeeccChhhcCCCCC--cEEEEEeeEE
Confidence 9999999999999988766432 124556666666778899999988 8999999987
Q ss_pred cccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccccc
Q 039743 143 AVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVN 201 (531)
Q Consensus 143 v~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~ 201 (531)
+ |++..++|.++++...++.+.++++||+|||||++ ++.|.+||+||+ ++|+.+
T Consensus 154 v---~~~~~~~a~~~~g~~~~~~v~~~~v~GvQFHPE~s-~~~G~~ll~nFl-~~~ge~ 207 (211)
T 4gud_A 154 M---PVGDYTIAQCEYGQPFSAAIQAGNYYGVQFHPERS-SKAGARLIQNFL-ELRGEN 207 (211)
T ss_dssp C---CCCTTEEEEEESSSEEEEEEEETTEEEESSCGGGS-HHHHHHHHHHHH-HC----
T ss_pred e---CCCCeEEEEecCCCeEEEEEeCCCEEEEEccCEec-CccHHHHHHHHH-HHhccc
Confidence 4 67788899998886655555568999999999986 578999999998 888744
|
| >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=260.04 Aligned_cols=182 Identities=20% Similarity=0.182 Sum_probs=149.1
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChh-ccccCCCCEEEEcCCCCCCCCCCCCCCh--HHHHHHHHhCC
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLD-DITAKNPRVVILSGGPHSVHSPDAPAFP--AGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~-~~~~~~~dgiIlsGGp~s~~~~~~~~~~--~~l~~~~~~~~ 81 (531)
++|+||+. ......++.+++++.|..++++....... .....++|||||||||++++++ .+++. .++++.+.+.+
T Consensus 4 ~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~~~~d~lIl~GGp~~~~d~-~~~~~~~~~~i~~~~~~~ 82 (250)
T 3m3p_A 4 KPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDD-LPWMPTLLALIRDAVAQR 82 (250)
T ss_dssp CCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSC-CTTHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCccccCCEEEECCCCCccccc-chHHHHHHHHHHHHHHcC
Confidence 46899964 44667889999999999999987543210 0013578999999999998875 56653 35677777789
Q ss_pred CcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC---CccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCC
Q 039743 82 VYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS---SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQ 158 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~---~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~ 158 (531)
+|+||||+|||+|+.++||+|.+.+.+++||..++++.. +++| ++++. +.++++|+|.+ ++|++++++|++++
T Consensus 83 ~PvlGIC~G~Qll~~~lGG~V~~~~~~e~G~~~v~~~~~~~~~~l~-g~~~~--~~v~~~H~~~v-~lp~~~~vlA~s~~ 158 (250)
T 3m3p_A 83 VPVIGHCLGGQLLAKAMGGEVTDSPHAEIGWVRAWPQHVPQALEWL-GTWDE--LELFEWHYQTF-SIPPGAVHILRSEH 158 (250)
T ss_dssp CCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEECSSHHHHHHH-SCSSC--EEEEEEEEEEE-CCCTTEEEEEEETT
T ss_pred CCEEEECHHHHHHHHHhCCEEEeCCCCceeeEEEEEecCCCCcccc-cCCCc--cEEEEEcccee-ecCCCCEEEEEeCC
Confidence 999999999999999999999999889999999998754 5788 78887 99999999998 89999999999999
Q ss_pred CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 159 GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 159 ~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|+++|+++.+ ++||+|||||+++ ..+..++++|-
T Consensus 159 ~~~~a~~~~~-~~~GvQfHPE~~~-~~~~~~l~~~~ 192 (250)
T 3m3p_A 159 CANQAYVLDD-LHIGFQCHIEMQA-HMVREWCSISP 192 (250)
T ss_dssp EEEEEEEETT-TEEEESSCTTCCH-HHHHHHHHHCG
T ss_pred CCEEEEEECC-eeEEEEeCCcCCH-HHHHHHHHhhH
Confidence 9999999864 6999999999986 34455555553
|
| >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=268.38 Aligned_cols=179 Identities=20% Similarity=0.291 Sum_probs=144.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+|+|||.++ ++.++|+++|++++++|++.+.+++...++|||||||||+++.+. ....++++.+.++++|||
T Consensus 191 ~~V~viD~G~k~--ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliLsGGPgdp~~~---~~~~~~Ir~~~~~~~PIL 265 (379)
T 1a9x_B 191 FHVVAYDFGAKR--NILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPC---DYAITAIQKFLETDIPVF 265 (379)
T ss_dssp EEEEEEESSCCH--HHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTC---HHHHHHHHHHTTSCCCEE
T ss_pred CEEEEEECCChH--HHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEEeCCCCChHHH---HHHHHHHHHHHHcCCCEE
Confidence 479999999874 599999999999999999887777655689999999999976532 223467788888899999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc--CCCCcEEEEEe-CCCcEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV--LPDGFEVVARS-QQGAVA 162 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~--lp~g~~vla~s-~~~~v~ 162 (531)
|||+|||+|+.++||++.+.+.++.|+.. ++. .++....+.++++|++.|.. +|+++++++.+ +++.++
T Consensus 266 GIClG~QLLa~A~GG~v~k~~~gh~g~n~-------pv~-~~~~g~v~its~~H~~aV~~~~Lp~~~~v~a~s~~Dg~ie 337 (379)
T 1a9x_B 266 GICLGHQLLALASGAKTVKMKFGHHGGNH-------PVK-DVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQ 337 (379)
T ss_dssp EETHHHHHHHHHTTCCEEEEEEEEEEEEE-------EEE-ETTTTEEEEEEEEEEEEECSTTCCTTEEEEEEETTTCCEE
T ss_pred EECchHHHHHHHhCcEEEecccccccCce-------eeE-ecCCCcEEEEecCccceEecccCCCCeEEEEEeCCCCcEE
Confidence 99999999999999999997544444321 111 12222224567899999975 99999999998 788999
Q ss_pred EEEECCCcEEEEecCCCCCCCc-ccchhhhhheeccc
Q 039743 163 AVENREKRLFGLQYHPEVTHSP-EGMETLRYFLFDVC 198 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~-~g~~i~~~F~~~~~ 198 (531)
|+++.++++||+|||||.++++ ++..||++|+ +.|
T Consensus 338 ai~~~~~pi~gVQFHPE~~~~p~d~~~Lf~~Fl-~~~ 373 (379)
T 1a9x_B 338 GIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFI-ELI 373 (379)
T ss_dssp EEEESSSSEEEESSCTTCSSSCSTTTHHHHHHH-HHH
T ss_pred EEEECCCCEEEEEeCCcCCCCcccHHHHHHHHH-HHH
Confidence 9999889999999999999876 5789999998 544
|
| >3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=253.43 Aligned_cols=184 Identities=20% Similarity=0.159 Sum_probs=151.9
Q ss_pred EEEEEeCC-CCcHHHHHHHHHHCCCEEEEEeCCCC--hhccccCCCCEEEEcCCCCCCCC--CCCCCCh----HHHHHHH
Q 039743 7 LVLILDYG-SQYTHLITRRIRSLSILSLCLSGTCS--LDDITAKNPRVVILSGGPHSVHS--PDAPAFP----AGFLEWA 77 (531)
Q Consensus 7 ~I~IlD~G-~~~~~~i~r~l~~~G~~~~v~~~~~~--~~~~~~~~~dgiIlsGGp~s~~~--~~~~~~~----~~l~~~~ 77 (531)
+|+||... ......+.+++++.|+.+.+++.... ..+ ...++|||||+|||+++++ .+.+|+. .++++.+
T Consensus 2 ~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~-~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (236)
T 3l7n_A 2 RIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK-DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKA 80 (236)
T ss_dssp EEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS-CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC-CccccCEEEECCCCCCcccccccCcccchHHHHHHHHHH
Confidence 68888542 22345789999999999998875322 111 1357899999999999653 3457773 4678888
Q ss_pred HhCCCcEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEec---CCccccCCCCCceEEEEeeccCccccCCCCcEEEE
Q 039743 78 LSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVER---SSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVA 154 (531)
Q Consensus 78 ~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~---~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla 154 (531)
.++++||||||+|||+|+.++||+|.+.+.+++|+.+++++. .+++|+++++. +.++++|++. ..+|++++++|
T Consensus 81 ~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~~~G~~~v~~~~~~~~~~l~~~~~~~--~~v~~~H~~~-~~lp~~~~vla 157 (236)
T 3l7n_A 81 AKSEKIIVGVCLGAQLMGVAYGADYLHSPKKEIGNYLISLTEAGKMDSYLSDFSDD--LLVGHWHGDM-PGLPDKAQVLA 157 (236)
T ss_dssp HHTTCEEEEETHHHHHHHHHTTCCCEEEEEEEEEEEEEEECTTGGGCGGGTTSCSE--EEEEEEEEEE-CCCCTTCEEEE
T ss_pred HHcCCCEEEEchHHHHHHHHhCCEEecCCCceeeeEEEEEccCcccChHHhcCCCC--cEEEEecCCc-ccCCChheEEE
Confidence 888999999999999999999999999988899999999876 46899999887 9999999987 78999999999
Q ss_pred EeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccccc
Q 039743 155 RSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVN 201 (531)
Q Consensus 155 ~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~ 201 (531)
++++|.++|+++. +++||+|||||++ ..++++|+ +.++..
T Consensus 158 ~s~~~~~~a~~~~-~~v~gvQfHPE~~-----~~~~~~~~-~~~~~~ 197 (236)
T 3l7n_A 158 ISQGCPRQIIKFG-PKQYAFQCHLEFT-----PELVAALI-AQEDDL 197 (236)
T ss_dssp ECSSCSCSEEEEE-TTEEEESSBSSCC-----HHHHHHHH-HHCSCH
T ss_pred ECCCCCEEEEEEC-CCEEEEEeCCCCC-----HHHHHHHH-Hhhhhh
Confidence 9999999999975 5899999999998 46999998 666543
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=249.76 Aligned_cols=177 Identities=22% Similarity=0.260 Sum_probs=148.5
Q ss_pred EEEEE-eCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCCCC-CCCC--hHHHHHHHHhC
Q 039743 7 LVLIL-DYGSQYTHLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHSPD-APAF--PAGFLEWALSN 80 (531)
Q Consensus 7 ~I~Il-D~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~~~-~~~~--~~~l~~~~~~~ 80 (531)
+|+|| .+...+...+.+++++.|+.+.+++.+.. +.+. ..++|||||||||.+++++. .+++ ..++++.+.++
T Consensus 14 ~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~-~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~ 92 (239)
T 1o1y_A 14 RVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKG-EKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKK 92 (239)
T ss_dssp EEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGT-CCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCc-cccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHHHHC
Confidence 67777 44566677899999999999988876431 2221 35789999999999888764 4443 34677878788
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCc-ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCC
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEK-QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQG 159 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~-~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~ 159 (531)
++|+||||+|||+|+.++||+|.+... +++|+..++...++++|+++++. +.++++|++.+ ++|++++++|.++++
T Consensus 93 ~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~~~v~~~~~~~l~~~~~~~--~~~~~~H~~~v-~lp~~~~vlA~s~~~ 169 (239)
T 1o1y_A 93 EIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVSDNKFFREFPDR--LRVFQWHGDTF-DLPRRATRVFTSEKY 169 (239)
T ss_dssp TCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEEEEEECCCCGGGTTSCSE--EEEEEEESEEE-CCCTTCEEEEECSSC
T ss_pred CCCEEEEchhHHHHHHHcCCeEecCCCCCccccEEEEECCCCchHHhCCCC--ceeEeecCCcc-ccCCCCEEEEEcCCC
Confidence 999999999999999999999999877 89999999877778999999877 99999999987 799999999999999
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
.++|+++. . +||+|||||++. .++++|+
T Consensus 170 ~iea~~~~-~-i~gvQfHPE~~~-----~~~~~~~ 197 (239)
T 1o1y_A 170 ENQGFVYG-K-AVGLQFHIEVGA-----RTMKRWI 197 (239)
T ss_dssp SCSEEEET-T-EEEESSBSSCCH-----HHHHHHH
T ss_pred CEEEEEEC-C-EEEEEeCccCCH-----HHHHHHH
Confidence 99999985 3 999999999975 4889997
|
| >3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=238.75 Aligned_cols=189 Identities=19% Similarity=0.219 Sum_probs=149.1
Q ss_pred CCEEEEEeCCCCcH-HHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC-----CCCChHHHHHHHH
Q 039743 5 PELVLILDYGSQYT-HLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD-----APAFPAGFLEWAL 78 (531)
Q Consensus 5 ~~~I~IlD~G~~~~-~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~-----~~~~~~~l~~~~~ 78 (531)
|++|+|+|+++.+. ..+.++++++|+.+.+++.+. + ..++||||||||++...+.. ......++++.+.
T Consensus 2 ~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~--~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (213)
T 3d54_D 2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD---K--LDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAA 76 (213)
T ss_dssp CCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC---C--CSSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC---C--cccCCEEEECCCCchhhhhccccccccHHHHHHHHHHH
Confidence 46899999998885 788999999999999987652 2 35789999999976432211 0122346677777
Q ss_pred hCCCcEEEeeHHHHHHHHH--cCCEEeecCc--ccceeeeEEEe-cCCccccCCCCCceEEEEeeccCcccc-CCCCcEE
Q 039743 79 SNGVYVLGICYGLQLMVQK--LDGVVKVGEK--QEYGRMEILVE-RSSGIFGNKKVGHHQVVWMSHGDEAVV-LPDGFEV 152 (531)
Q Consensus 79 ~~~iPvLGIC~G~Qlla~~--~GG~v~~~~~--~e~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~H~~~v~~-lp~g~~v 152 (531)
++++||||||+|+|+|+.+ ++|+|.+.+. .+.|++.+++. .++++++++++...+.++++|++.... .|+++.+
T Consensus 77 ~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~~~~~l~~~~~~~~~~~~~~~H~~~s~~~~~~~~~~ 156 (213)
T 3d54_D 77 ERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVENNDTPFTNAFEKGEKIRIPIAHGFGRYVKIDDVNVV 156 (213)
T ss_dssp HHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECCCSSTTSTTSCTTCEEEEECCBSSCEEECSSCCEEE
T ss_pred HCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCCCCCceeeccCCCCEEEEEeecCceEEEecCCCcEE
Confidence 7899999999999999999 9999988753 37899999987 678899998763236777799552122 2588999
Q ss_pred EEEeCC-----CcEEEEEECCCcEEEEecCCCCCC-----Ccccchhhhhheecccc
Q 039743 153 VARSQQ-----GAVAAVENREKRLFGLQYHPEVTH-----SPEGMETLRYFLFDVCG 199 (531)
Q Consensus 153 la~s~~-----~~v~ai~~~~~~i~gvQFHPE~~~-----~~~g~~i~~~F~~~~~~ 199 (531)
+|.+++ +.++|++++++++||+|||||++. ++.|.+||+||+ +.|+
T Consensus 157 ~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~-~~~~ 212 (213)
T 3d54_D 157 LRYVKDVNGSDERIAGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSIL-NYLK 212 (213)
T ss_dssp EEESSCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTTTTCSTTSHHHHHHH-HHCC
T ss_pred EEEcCCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHhhhcCccHHHHHHHH-HHhh
Confidence 999876 589999987889999999999987 578999999998 6653
|
| >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=236.96 Aligned_cols=172 Identities=19% Similarity=0.302 Sum_probs=130.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
++|+|||+.++|.. +.++|+++|+.+.+++.+ ++ ..++||||||||+++++++..+ ...+++...++++|+|
T Consensus 1 m~i~vl~~~g~~~~-~~~~l~~~G~~~~~~~~~---~~--~~~~dglil~GG~~~~~~~~~~--~~~~~~~i~~~~~Pil 72 (186)
T 2ywj_A 1 MIIGVLAIQGDVEE-HEEAIKKAGYEAKKVKRV---ED--LEGIDALIIPGGESTAIGKLMK--KYGLLEKIKNSNLPIL 72 (186)
T ss_dssp CEEEEECSSSCCHH-HHHHHHHTTSEEEEECSG---GG--GTTCSEEEECCSCHHHHHHHHH--HTTHHHHHHTCCCCEE
T ss_pred CEEEEEecCcchHH-HHHHHHHCCCEEEEECCh---HH--hccCCEEEECCCCchhhhhhhh--ccCHHHHHHhcCCcEE
Confidence 36999999877865 569999999999888742 22 3568999999999866533110 1123444447799999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC-----------CccccCCCCCceEEEEeeccCccccC-CCCcEEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS-----------SGIFGNKKVGHHQVVWMSHGDEAVVL-PDGFEVV 153 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~~~~~~~v~~~H~~~v~~l-p~g~~vl 153 (531)
|||+|||+|+.++||++. ++|+.+.++... +.++.++ .. +.++++|++.|.++ |++++++
T Consensus 73 GIC~G~Qll~~~~gg~~~-----~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~H~~~v~~l~~~~~~v~ 144 (186)
T 2ywj_A 73 GTCAGMVLLSKGTGINQI-----LLELMDITVKRNAYGRQVDSFEKEIEFKDL-GK--VYGVFIRAPVVDKILSDDVEVI 144 (186)
T ss_dssp EETHHHHHHSSCCSSCCC-----CCCCSSEEEETTTTCSSSCCEEEEEEETTT-EE--EEEEESSCCEEEEECCTTCEEE
T ss_pred EECHHHHHHHHHhCCCcC-----ccCCCceeEEeccCCCcccceecccccccC-Cc--EEEEEEecceeeecCCCCeEEE
Confidence 999999999999999853 244444333211 1345555 44 88999999999889 9999999
Q ss_pred EEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 154 ARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 154 a~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
|++ ++.++|+++ +++||+|||||+++ .|.++|+||+ +.|+
T Consensus 145 a~s-d~~~~a~~~--~~~~gvQfHPE~~~--~g~~l~~~F~-~~~~ 184 (186)
T 2ywj_A 145 ARD-GDKIVGVKQ--GKYMALSFHPELSE--DGYKVYKYFV-ENCV 184 (186)
T ss_dssp EEE-TTEEEEEEE--TTEEEESSCGGGST--THHHHHHHHH-HHHT
T ss_pred EEE-CCEEEEEee--CCEEEEECCCCcCC--chhHHHHHHH-HHHh
Confidence 999 677999996 47999999999886 3899999998 6654
|
| >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-29 Score=236.76 Aligned_cols=173 Identities=18% Similarity=0.271 Sum_probs=131.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCC-----CEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCC----ChHHHHHH
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLS-----ILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPA----FPAGFLEW 76 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G-----~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~----~~~~l~~~ 76 (531)
++|+|||||+++.+++.++|+++| +++++++.+.+ .++|||||||| ++ +.+..++ ...++++.
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~~------~~~dglilpG~-g~-~~~~~~~l~~~~~~~~i~~ 72 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN------DLYDLLFIPGV-GH-FGEGMRRLRENDLIDFVRK 72 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCCS------SCCSEEEECCC-SC-SHHHHHHHHHTTCHHHHHH
T ss_pred CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCcc------cCCCEEEECCC-Cc-HHHHHHHHHhhCHHHHHHH
Confidence 369999999989899999999999 89998875321 46899999885 32 2211111 13466777
Q ss_pred HHhCCCcEEEeeHHHHHHHHHcC------------CEEeecC---cccceeeeEEEecCCccccCCCCCceEEEEeeccC
Q 039743 77 ALSNGVYVLGICYGLQLMVQKLD------------GVVKVGE---KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGD 141 (531)
Q Consensus 77 ~~~~~iPvLGIC~G~Qlla~~~G------------G~v~~~~---~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~ 141 (531)
+.++++||||||+|||+|+.++| |++.+.. .++.|++.+.....+ +. +.++++|++
T Consensus 73 ~~~~~~PilGIC~G~Qll~~~~g~~G~~~~l~~~~g~v~~~~~~~~~~~g~~~l~~~~~~-------~~--~~v~~~H~~ 143 (201)
T 1gpw_B 73 HVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTF-------PN--GYYYFVHTY 143 (201)
T ss_dssp HHHTTCEEEEETHHHHTTSSEETTEEEEECCCSSSEEEEECCCSSCSEEEEEEEEESSSS-------CC--EEEEEEESE
T ss_pred HHHcCCeEEEEChhHHHHHHhhccCCCCCCcceeeeEEEEcCCCCCCcccceeeEeccCC-------CC--CeEEEECcc
Confidence 77889999999999999999996 4454442 234555555432111 35 899999999
Q ss_pred ccccCCCCcEEEEEeCC-C-cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccc
Q 039743 142 EAVVLPDGFEVVARSQQ-G-AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGV 200 (531)
Q Consensus 142 ~v~~lp~g~~vla~s~~-~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~ 200 (531)
.|..+ +++++|++++ + .++|+++.+ ++||+|||||++ ++.|.++|+||+ +.|+.
T Consensus 144 ~v~~~--~~~vla~s~~~g~~~~a~~~~~-~i~gvQfHPE~~-~~~~~~l~~~f~-~~~~~ 199 (201)
T 1gpw_B 144 RAVCE--EEHVLGTTEYDGEIFPSAVRKG-RILGFQFHPEKS-SKIGRKLLEKVI-ECSLS 199 (201)
T ss_dssp EEEEC--GGGEEEEEEETTEEEEEEEEET-TEEEESSCGGGS-HHHHHHHHHHHH-HHSSC
T ss_pred eeccC--CCEEEEEEccCCceEEEEEECC-CEEEEECCCccc-CHhHHHHHHHHH-HHhhc
Confidence 99765 7999999876 4 899999754 899999999999 578999999998 66643
|
| >2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-29 Score=251.39 Aligned_cols=191 Identities=14% Similarity=0.163 Sum_probs=140.6
Q ss_pred CEEEEE-eC-CCCc-HHHHHHHHHHCCCE----EEEEeCCC----------Chhc---c--ccCCCCEEEEcCCCCCCCC
Q 039743 6 ELVLIL-DY-GSQY-THLITRRIRSLSIL----SLCLSGTC----------SLDD---I--TAKNPRVVILSGGPHSVHS 63 (531)
Q Consensus 6 ~~I~Il-D~-G~~~-~~~i~r~l~~~G~~----~~v~~~~~----------~~~~---~--~~~~~dgiIlsGGp~s~~~ 63 (531)
.+|+|| || |.++ ..++.++|+++|++ +++...+. +.++ . ...++||||||||+++...
T Consensus 26 ~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~~~~~ 105 (289)
T 2v4u_A 26 CSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGIRGT 105 (289)
T ss_dssp EEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCSSTTH
T ss_pred eEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCCchhH
Confidence 369999 99 9988 77899999988753 34443322 1111 0 1346899999999875211
Q ss_pred CCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEee---cC--------------------------cccceeee
Q 039743 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKV---GE--------------------------KQEYGRME 114 (531)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~---~~--------------------------~~e~G~~~ 114 (531)
....++++.+.++++||||||+|||+|+.++||+|.. .. ..++|++.
T Consensus 106 ----~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~~~~~~~~g~~~ 181 (289)
T 2v4u_A 106 ----LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRR 181 (289)
T ss_dssp ----HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTCSSCBCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcccccCCccccceEE
Confidence 1134677777788999999999999999999998841 10 11256788
Q ss_pred EEEe-cCCccccCCCCCceEEEEeecc-------CccccCC-CCcEEEEEeCCCc-EEEEEECCCcEE-EEecCCCCCCC
Q 039743 115 ILVE-RSSGIFGNKKVGHHQVVWMSHG-------DEAVVLP-DGFEVVARSQQGA-VAAVENREKRLF-GLQYHPEVTHS 183 (531)
Q Consensus 115 v~~~-~~~~l~~~~~~~~~~~v~~~H~-------~~v~~lp-~g~~vla~s~~~~-v~ai~~~~~~i~-gvQFHPE~~~~ 183 (531)
+++. +++++++.++.. ..+++.|+ +.+..+| +|++++|.++++. ++||++.+++++ |+|||||++.+
T Consensus 182 v~~~~~~s~l~~~~~~~--~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~lGvQfHPE~~~~ 259 (289)
T 2v4u_A 182 TVFKTENSILRKLYGDV--PFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSR 259 (289)
T ss_dssp EEESCSCCHHHHHTTSC--SEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCEEEESSBGGGGCB
T ss_pred EEEecCCCHHHHhcCCC--ceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeEEEEECCCCCCCC
Confidence 8886 567777777664 46666665 7778899 9999999999997 999999877755 99999999876
Q ss_pred c-ccchhhhhheeccccccc
Q 039743 184 P-EGMETLRYFLFDVCGVNA 202 (531)
Q Consensus 184 ~-~g~~i~~~F~~~~~~~~~ 202 (531)
+ .+..+|++|+...+++..
T Consensus 260 ~~~~~~lf~~Fv~~~~~~~~ 279 (289)
T 2v4u_A 260 PMKPSPPYLGLLLAATGNLN 279 (289)
T ss_dssp TTBCCHHHHHHHHHHHTCHH
T ss_pred CCchHHHHHHHHHHHHhhhh
Confidence 5 478999999944433333
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-29 Score=251.53 Aligned_cols=196 Identities=16% Similarity=0.216 Sum_probs=141.3
Q ss_pred CEEEEEeC-CC---------Cc-HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLILDY-GS---------QY-THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~IlD~-G~---------~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
+.|+|+.. +. .| ..+++++|+++|+.+++++.+.+.+++. ..++||||||||++++.+.........
T Consensus 31 P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~~~ 110 (315)
T 1l9x_A 31 PIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKI 110 (315)
T ss_dssp CEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHH
T ss_pred CEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhhhhHHHHH
Confidence 57999833 21 22 3468999999999999999876655543 347899999999987643211111234
Q ss_pred HHHHHHhC-----CCcEEEeeHHHHHHHHHcCCEEeecCccccee-eeEEEe---cCCccccCCCCCc------eEEEEe
Q 039743 73 FLEWALSN-----GVYVLGICYGLQLMVQKLDGVVKVGEKQEYGR-MEILVE---RSSGIFGNKKVGH------HQVVWM 137 (531)
Q Consensus 73 l~~~~~~~-----~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~-~~v~~~---~~~~l~~~~~~~~------~~~v~~ 137 (531)
+++.+++. ++||||||+|||+|+.++||++......++|. .+++.. .++++|+++++.. ...+++
T Consensus 111 l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~~~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~~~~~~~ 190 (315)
T 1l9x_A 111 FYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTAN 190 (315)
T ss_dssp HHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEEEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccccccccccCCCCCeeeccCCCCChHHHhcChhhhhhccccceEEE
Confidence 55555544 69999999999999999999976654445564 345544 4568998886420 012456
Q ss_pred eccCccc--------cCCCCcEEEEEeCCCcEEEE---EECCCcEEEEecCCCCCCCc---------------ccchhhh
Q 039743 138 SHGDEAV--------VLPDGFEVVARSQQGAVAAV---ENREKRLFGLQYHPEVTHSP---------------EGMETLR 191 (531)
Q Consensus 138 ~H~~~v~--------~lp~g~~vla~s~~~~v~ai---~~~~~~i~gvQFHPE~~~~~---------------~g~~i~~ 191 (531)
+|++.|. .+|++++++|.++++.++++ +++++++||+|||||+.+++ .|..+|+
T Consensus 191 ~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~ 270 (315)
T 1l9x_A 191 FHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAE 270 (315)
T ss_dssp EEEEECBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCccccccccccCCCCEEEEEcCCCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHH
Confidence 9999997 78999999999999876665 66777899999999986421 3669999
Q ss_pred hheeccccccc
Q 039743 192 YFLFDVCGVNA 202 (531)
Q Consensus 192 ~F~~~~~~~~~ 202 (531)
+|+ +.|+.+.
T Consensus 271 ~Fv-~~a~~~~ 280 (315)
T 1l9x_A 271 FFV-NEARKNN 280 (315)
T ss_dssp HHH-HHHTTSC
T ss_pred HHH-HHHHhcc
Confidence 998 8886544
|
| >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=227.04 Aligned_cols=176 Identities=19% Similarity=0.283 Sum_probs=135.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCC-C-CCCCCCCChHHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHS-V-HSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s-~-~~~~~~~~~~~l~~~~~~~~iP 83 (531)
++|+|+|+|.++..++.++|+++|+++++++.+. ++ .++||||||||... . ...-......++++.+.++++|
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~---~l--~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~P 77 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPK---AH--EEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLP 77 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTT---SC--SSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCC
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecChH---Hc--ccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCe
Confidence 4799999999999999999999999999987432 22 46899999884331 1 0110112245677777788999
Q ss_pred EEEeeHHHHHHHHH---cC---------CEEeecC---cccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCC
Q 039743 84 VLGICYGLQLMVQK---LD---------GVVKVGE---KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPD 148 (531)
Q Consensus 84 vLGIC~G~Qlla~~---~G---------G~v~~~~---~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~ 148 (531)
|||||+|||+|+.+ +| |+|.+.. .+++|++.+++++ + +.++++ +.++++|++.+ .+++
T Consensus 78 ilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~~v~~~~-~--l~~~~~---~~~~~~Hs~~~-~~~~ 150 (200)
T 1ka9_H 78 FLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEFGG-A--FAPLTG---RHFYFANSYYG-PLTP 150 (200)
T ss_dssp EEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEECEECG-G--GGGGTT---CEEEEEESEEC-CCCT
T ss_pred EEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeEEEEEech-h--hhcCCC---CCEEEeccccc-CCCC
Confidence 99999999999999 68 8888764 4689999998877 4 666654 57899999998 6655
Q ss_pred CcEEEEEeCC-C-cEEEEEECCCcEEEEecCCCCCCCcccchhh---hhheeccc
Q 039743 149 GFEVVARSQQ-G-AVAAVENREKRLFGLQYHPEVTHSPEGMETL---RYFLFDVC 198 (531)
Q Consensus 149 g~~vla~s~~-~-~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~---~~F~~~~~ 198 (531)
+ .+ |++++ + .++++.+.+ ++||+|||||++. +.|.+|| +||+ +.|
T Consensus 151 ~-~v-a~s~~~g~~~~~~~~~~-~i~gvQfHPE~~~-~~g~~l~~~~~~F~-~~~ 200 (200)
T 1ka9_H 151 Y-SL-GKGEYEGTPFTALLAKE-NLLAPQFHPEKSG-KAGLAFLALARRYF-EVL 200 (200)
T ss_dssp T-CC-EEEEETTEEEEEEEECS-SEEEESSCTTSSH-HHHHHHHHHHHHHC----
T ss_pred C-cE-EEEEeCCeEEEEEEeeC-CEEEEecCCCcCc-cchhHHHHHHHHHH-hhC
Confidence 4 66 88876 4 788888754 8999999999997 7899999 9998 543
|
| >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-27 Score=223.39 Aligned_cols=175 Identities=17% Similarity=0.260 Sum_probs=130.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCC-CChHHHHHHHHhCCCc
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP-AFPAGFLEWALSNGVY 83 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~-~~~~~l~~~~~~~~iP 83 (531)
|++|+|+|++++|...+ ++++++|+.+.+++.. +++ .++||||||||+.++++.... .-..++++.+.++++|
T Consensus 1 ~m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~~---~~l--~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p 74 (196)
T 2nv0_A 1 MLTIGVLGLQGAVREHI-HAIEACGAAGLVVKRP---EQL--NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKP 74 (196)
T ss_dssp CCEEEEECSSSCCHHHH-HHHHHTTCEEEEECSG---GGG--GGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CcEEEEEEccCCcHHHH-HHHHHCCCEEEEeCCh---HHH--hhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCc
Confidence 36899999988888755 9999999998887642 233 468999999998765542100 1114667777788999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC-----------CccccCCCCCceEEEEeeccCccccCCCCcEE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS-----------SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEV 152 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~v 152 (531)
+||||+|||+|+.++||++.+ +.|+.++++... +..+.+++.. +.++++|++.+..+|+++++
T Consensus 75 ilgIC~G~q~l~~~~gg~~~~----~lg~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~--~~~~~~h~~~v~~~~~~~~v 148 (196)
T 2nv0_A 75 MFGTCAGLIILAKEIAGSDNP----HLGLLNVVVERNSFGRQVDSFEADLTIKGLDEP--FTGVFIRAPHILEAGENVEV 148 (196)
T ss_dssp EEEETHHHHHHSBCCC----C----CCCCSCEEEECCCSCTTTSEEEEEECCTTCSSC--EEEEEESCCEEEEECTTCEE
T ss_pred EEEECHHHHHHHHHhcCCCCC----cccCCceeEeccCCCcccccccCCcccccCCCc--eEEEEEecceecccCCCcEE
Confidence 999999999999999997632 344444433211 2345556656 89999999998889999999
Q ss_pred EEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 153 VARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 153 la~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+|.+ ++.++|+++ +++||+|||||++.+ .+++++|+ +.|
T Consensus 149 ~a~~-d~~~~a~~~--~~~~gvQfHPE~~~~---~~l~~~fl-~~~ 187 (196)
T 2nv0_A 149 LSEH-NGRIVAAKQ--GQFLGCSFHPELTED---HRVTQLFV-EMV 187 (196)
T ss_dssp EEEE-TTEEEEEEE--TTEEEESSCTTSSSC---CHHHHHHH-HHH
T ss_pred EEEE-CCEEEEEEE--CCEEEEEECCccCCc---hHHHHHHH-HHH
Confidence 9999 567789986 589999999999864 48999998 555
|
| >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-27 Score=234.21 Aligned_cols=187 Identities=19% Similarity=0.198 Sum_probs=132.9
Q ss_pred CEEEEE-eCC---CCcHHHHHHHHH----HCCCEEEEEeCCCCh-hc-----c--ccCCCCEEEEcCCCCCCCCCCCCCC
Q 039743 6 ELVLIL-DYG---SQYTHLITRRIR----SLSILSLCLSGTCSL-DD-----I--TAKNPRVVILSGGPHSVHSPDAPAF 69 (531)
Q Consensus 6 ~~I~Il-D~G---~~~~~~i~r~l~----~~G~~~~v~~~~~~~-~~-----~--~~~~~dgiIlsGGp~s~~~~~~~~~ 69 (531)
.+|+|+ ||| ..+-.++.++|+ +.|+.+.+++.+... .. + ...++|||||||||++.... -
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~~----~ 84 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGNRGVD----G 84 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTTTTHH----H
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCCcCch----h
Confidence 479999 995 334345555554 456667777654321 10 1 13578999999998652111 1
Q ss_pred hHHHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEee-----cC-------c----------------ccceeeeEEEe-cC
Q 039743 70 PAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKV-----GE-------K----------------QEYGRMEILVE-RS 120 (531)
Q Consensus 70 ~~~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~-----~~-------~----------------~e~G~~~v~~~-~~ 120 (531)
...+++.+.++++|+||||+|||+|+.++||+|.. .. . .++||+.+++. ++
T Consensus 85 ~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~~~~~~ 164 (273)
T 2w7t_A 85 KCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVYIVEKS 164 (273)
T ss_dssp HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEEECCTT
T ss_pred HHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEEEecCC
Confidence 34677777778999999999999999999998841 10 0 14688888886 36
Q ss_pred CccccCCCCCceEEEEe--eccCcc-----ccC-CCCcEEEEEeCC----C-cEEEEEECCCc-EEEEecCCCCCCCcc-
Q 039743 121 SGIFGNKKVGHHQVVWM--SHGDEA-----VVL-PDGFEVVARSQQ----G-AVAAVENREKR-LFGLQYHPEVTHSPE- 185 (531)
Q Consensus 121 ~~l~~~~~~~~~~~v~~--~H~~~v-----~~l-p~g~~vla~s~~----~-~v~ai~~~~~~-i~gvQFHPE~~~~~~- 185 (531)
+++++.+++. ..+++ .|++.| ..+ |++++++|++++ + .++|+++.+++ ++|+|||||++.++.
T Consensus 165 s~l~~~~~~~--~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~~ 242 (273)
T 2w7t_A 165 SIMAKIYSKS--NIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPMD 242 (273)
T ss_dssp SHHHHHTTTC--SEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTTB
T ss_pred cHHHHHhCCC--ceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCCc
Confidence 7777766655 45655 556555 356 899999999988 5 89999998777 559999999998664
Q ss_pred cchhhhhheecccc
Q 039743 186 GMETLRYFLFDVCG 199 (531)
Q Consensus 186 g~~i~~~F~~~~~~ 199 (531)
+.+||+||+ +.|+
T Consensus 243 ~~~l~~~Fv-~~~~ 255 (273)
T 2w7t_A 243 PAPTYLSFM-AAAA 255 (273)
T ss_dssp CCHHHHHHH-HHHH
T ss_pred hHHHHHHHH-HHHH
Confidence 599999998 5554
|
| >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-26 Score=221.79 Aligned_cols=175 Identities=21% Similarity=0.288 Sum_probs=131.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC-CCChHHHHHHHHhCCCcE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA-PAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~-~~~~~~l~~~~~~~~iPv 84 (531)
++|+|+|+.++|.. +.++|+++|+.+.+++.. ++ ..++||||||||+.+.++... .....++++.+.++++||
T Consensus 24 ~~I~il~~~~~~~~-~~~~l~~~G~~~~~~~~~---~~--l~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~Pi 97 (219)
T 1q7r_A 24 MKIGVLGLQGAVRE-HVRAIEACGAEAVIVKKS---EQ--LEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPM 97 (219)
T ss_dssp CEEEEESCGGGCHH-HHHHHHHTTCEEEEECSG---GG--GTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCE
T ss_pred CEEEEEeCCCCcHH-HHHHHHHCCCEEEEECCH---HH--HhhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeE
Confidence 57999999887875 468999999999988753 23 357899999999876543210 011246777888889999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC-----------CccccCCCCCceEEEEeeccCccccCCCCcEEE
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS-----------SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVV 153 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vl 153 (531)
||||+|||+|+.++||++.+ ..|+.++++... ...+.+++.. +.++++|++.+..+|++++++
T Consensus 98 lGIC~G~QlL~~~~gg~~~~----~lg~~~~~~~~~~~g~~~~~~~~~~~~~g~g~~--~~~~~~h~~~v~~l~~~~~v~ 171 (219)
T 1q7r_A 98 FGTCAGLILLAKRIVGYDEP----HLGLMDITVERNSFGRQRESFEAELSIKGVGDG--FVGVFIRAPHIVEAGDGVDVL 171 (219)
T ss_dssp EEETTHHHHHEEEEESSCCC----CCCCEEEEEECHHHHCCCCCEEEEEEETTTEEE--EEEEESSCCEEEEECTTCEEE
T ss_pred EEECHHHHHHHHHhCCCCcC----CcCccceEEEecCCCccccceecCcccCCCCCc--eEEEEEecceeeccCCCcEEE
Confidence 99999999999999997632 334433332210 1223455445 889999999998899999999
Q ss_pred EEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 154 ARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 154 a~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
|.+ ++.++|+++ +++||+|||||++.+ .++|++|+ +.|+
T Consensus 172 a~s-dg~~ea~~~--~~i~GvQfHPE~~~~---~~l~~~fl-~~~~ 210 (219)
T 1q7r_A 172 ATY-NDRIVAARQ--GQFLGCSFHPELTDD---HRLMQYFL-NMVK 210 (219)
T ss_dssp EEE-TTEEEEEEE--TTEEEESSCGGGSSC---CHHHHHHH-HHHH
T ss_pred EEc-CCEEEEEEE--CCEEEEEECcccCCC---HHHHHHHH-HHHH
Confidence 999 678899997 589999999999864 58999998 5553
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-26 Score=247.58 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=138.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCC-CCCCCC-CCCChHHHHHHHHhCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPH-SVHSPD-APAFPAGFLEWALSNGV 82 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~-s~~~~~-~~~~~~~l~~~~~~~~i 82 (531)
|++|+|+|||.++.+++.++|+++|+.+++++...+ . ...++||||||||.. +..... ......++++.+.++++
T Consensus 4 m~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~--~-~l~~~DglILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~ 80 (555)
T 1jvn_A 4 MPVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKD--F-NISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGK 80 (555)
T ss_dssp SCEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGG--C-CSTTCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccc--c-ccccCCEEEECCCCchHhHhhhhhhccHHHHHHHHHHcCC
Confidence 578999999988888999999999999999874322 1 135789999998533 111000 00112456777778899
Q ss_pred cEEEeeHHHHHHHHHc------------CCEEeecC-----cccceeeeEEEecCCccccCCCCCceEEEEeeccCcccc
Q 039743 83 YVLGICYGLQLMVQKL------------DGVVKVGE-----KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV 145 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~------------GG~v~~~~-----~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~ 145 (531)
|+||||+|||+|+.++ ||+|.+.+ .+++||+.+++. +++|+++++. +.++++|++.+..
T Consensus 81 PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~~~--~~L~~~l~~~--~~~~~vHS~~~~~ 156 (555)
T 1jvn_A 81 PIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPS--ENLFFGLDPY--KRYYFVHSFAAIL 156 (555)
T ss_dssp CEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCCCC--TTCCTTCCTT--SCEEEEESEECBC
T ss_pred cEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEEEc--CHHHhhCCCC--ceEEEEEEEEEEe
Confidence 9999999999999998 78888753 357899888765 7899998876 5778888777643
Q ss_pred C-------CCCcEEEEEeCC---CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhee
Q 039743 146 L-------PDGFEVVARSQQ---GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLF 195 (531)
Q Consensus 146 l-------p~g~~vla~s~~---~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~ 195 (531)
+ |+++.++|.++. +.++|++. +++||+|||||.++ ..|.++|+||+.
T Consensus 157 i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~--~~i~GvQFHPE~s~-~~g~~l~~~Fl~ 213 (555)
T 1jvn_A 157 NSEKKKNLENDGWKIAKAKYGSEEFIAAVNK--NNIFATQFHPEKSG-KAGLNVIENFLK 213 (555)
T ss_dssp CHHHHHHHHHTTCEEEEEEETTEEEEEEEEE--TTEEEESSBGGGSH-HHHHHHHHHHHT
T ss_pred cccccccCCCCCEEEEEEcCCCCCeEEEEEe--CCEEEEEeCcEecC-hhHHHHHHHHHh
Confidence 2 678999998873 57899984 68999999999875 578999999983
|
| >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-25 Score=212.26 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=125.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~~~~~~iP 83 (531)
.+|+|+||.+ +...+.++|+++|+.+.+++.. +++ .++||||||||+.+.++.. ... ..++++.+.++++|
T Consensus 21 ~~I~ii~~~~-~~~~~~~~l~~~g~~~~~~~~~---~~l--~~~d~iil~GG~~~~~~~~~~~~~-~~~~i~~~~~~g~P 93 (208)
T 2iss_D 21 MKIGVLGVQG-DVREHVEALHKLGVETLIVKLP---EQL--DMVDGLILPGGESTTMIRILKEMD-MDEKLVERINNGLP 93 (208)
T ss_dssp CEEEEECSSS-CHHHHHHHHHHTTCEEEEECSG---GGG--GGCSEEEECSSCHHHHHHHHHHTT-CHHHHHHHHHTTCC
T ss_pred cEEEEEECCC-chHHHHHHHHHCCCEEEEeCCh---HHH--hhCCEEEECCCcHHHHHhhhhhhh-HHHHHHHHHHCCCe
Confidence 5799999944 4456889999999998887643 233 4689999999976544320 011 24567777788999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC-----------CccccCCC-CCceEEEEeeccCccccCCCCcE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS-----------SGIFGNKK-VGHHQVVWMSHGDEAVVLPDGFE 151 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~-~~~~~~v~~~H~~~v~~lp~g~~ 151 (531)
+||||+|||+|+.++||... ...|+.+.++... +..+.+++ .+ +.++++|++.+..+|++++
T Consensus 94 ilGIC~G~QlL~~~~gg~~~----~~lg~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~ 167 (208)
T 2iss_D 94 VFATCAGVILLAKRIKNYSQ----EKLGVLDITVERNAYGRQVESFETFVEIPAVGKDP--FRAIFIRAPRIVETGKNVE 167 (208)
T ss_dssp EEEETHHHHHHEEEEC---C----CCCCCEEEEEETTTTCSGGGCEEEEECCGGGCSSC--EEEEESSCCEEEEECSSCE
T ss_pred EEEECHHHHHHHHHcCCCCC----CCccccceEEEecCCCcccccccCCcccccCCCCc--eEEEEEeCcccccCCCCcE
Confidence 99999999999999999532 2334333333211 12345554 34 8999999999888899999
Q ss_pred EEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 152 VVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 152 vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
++|.+ ++.++|++. +++||+|||||++.+ .+++++|+ +.|
T Consensus 168 v~a~~-d~~~~a~~~--~~i~GvQfHPE~~~~---~~l~~~fl-~~~ 207 (208)
T 2iss_D 168 ILATY-DYDPVLVKE--GNILACTFHPELTDD---LRLHRYFL-EMV 207 (208)
T ss_dssp EEEEE-TTEEEEEEE--TTEEEESSCGGGSSC---CHHHHHHH-TTC
T ss_pred EEEEE-CCEEEEEEE--CCEEEEEeCCCcCCc---HHHHHHHH-HHh
Confidence 99998 588999986 479999999999875 38999998 554
|
| >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-25 Score=207.72 Aligned_cols=174 Identities=20% Similarity=0.258 Sum_probs=124.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC-CCChHHHHHHHHhCC-Cc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA-PAFPAGFLEWALSNG-VY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~-~~~~~~l~~~~~~~~-iP 83 (531)
++|+|+.+.+.+ ..+.++|+++|+.+++++... + ..++||||||||+....+.-. .....++++.+.+++ +|
T Consensus 3 p~Igi~~~~~~~-~~~~~~l~~~G~~~~~~~~~~---~--l~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~P 76 (191)
T 2ywd_A 3 GVVGVLALQGDF-REHKEALKRLGIEAKEVRKKE---H--LEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLA 76 (191)
T ss_dssp CCEEEECSSSCH-HHHHHHHHTTTCCCEEECSGG---G--GTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCE
T ss_pred cEEEEEecCCch-HHHHHHHHHCCCEEEEeCChh---h--hccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCe
Confidence 579999875544 579999999999999887532 2 256899999999643211100 011245667777788 99
Q ss_pred EEEeeHHHHHHHHHcCC-EEeecCcccceeeeEEEecC-----------CccccCCCCCceEEEEeeccCccccCCCCcE
Q 039743 84 VLGICYGLQLMVQKLDG-VVKVGEKQEYGRMEILVERS-----------SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFE 151 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG-~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~ 151 (531)
|||||+|||+|+.++|| ++.+ ..|+.+.++... ...+.++ .. +.++++|++.+..+|++++
T Consensus 77 ilGiC~G~Q~l~~~~gg~~~~~----~lg~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~--~~~~~~Hs~~v~~l~~~~~ 149 (191)
T 2ywd_A 77 LFGTCAGAIWLAKEIVGYPEQP----RLGVLEAWVERNAFGRQVESFEEDLEVEGL-GS--FHGVFIRAPVFRRLGEGVE 149 (191)
T ss_dssp EEEETHHHHHHEEEETTCTTCC----CCCCEEEEEETTCSCCSSSEEEEEEEETTT-EE--EEEEEESCCEEEEECTTCE
T ss_pred EEEECHHHHHHHHHhCCCCCCc----cccccceEEEcCCcCCccccccccccccCC-Cc--eeEEEEcccceeccCCCcE
Confidence 99999999999999998 4321 222222222110 1123334 34 7889999999888999999
Q ss_pred EEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 152 VVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 152 vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
++|.+ ++.++|+++ +++||+|||||.+.. + ++|+||+ +.|+
T Consensus 150 ~~a~~-~~~~~a~~~--~~~~gvQfHPE~~~~--~-~l~~~f~-~~~~ 190 (191)
T 2ywd_A 150 VLARL-GDLPVLVRQ--GKVLASSFHPELTED--P-RLHRYFL-ELAG 190 (191)
T ss_dssp EEEEE-TTEEEEEEE--TTEEEESSCGGGSSC--C-HHHHHHH-HHHT
T ss_pred EEEEE-CCEEEEEEE--CCEEEEEeCCCCCCC--c-HHHHHHH-HHhc
Confidence 99999 588999997 369999999998763 3 8999998 6654
|
| >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-25 Score=214.93 Aligned_cols=179 Identities=16% Similarity=0.201 Sum_probs=133.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHC---CCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCC--Ch-HHHHHHHHh
Q 039743 6 ELVLILDYGSQYTHLITRRIRSL---SILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPA--FP-AGFLEWALS 79 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~---G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~--~~-~~l~~~~~~ 79 (531)
++|+|+++++.+. .+.+.|+++ |+.+.+++.. +++ .++||||||||++++++..... .. .+.++.+.+
T Consensus 4 ~~I~Il~~~~~~~-~~~~~l~~~~~~G~~~~~~~~~---~~l--~~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~ 77 (227)
T 2abw_A 4 ITIGVLSLQGDFE-PHINHFIKLQIPSLNIIQVRNV---HDL--GLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIH 77 (227)
T ss_dssp EEEEEECTTSCCH-HHHHHHHTTCCTTEEEEEECSH---HHH--HTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCcH-HHHHHHHHhccCCeEEEEEcCc---ccc--ccCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5799999987765 589999999 9888777632 333 4689999999987554421111 11 356666778
Q ss_pred C-CCcEEEeeHHHHHHHHHcCCEEeecC---cccceeeeEEEecCC-----------ccccCC----CCCceEEEEeecc
Q 039743 80 N-GVYVLGICYGLQLMVQKLDGVVKVGE---KQEYGRMEILVERSS-----------GIFGNK----KVGHHQVVWMSHG 140 (531)
Q Consensus 80 ~-~iPvLGIC~G~Qlla~~~GG~v~~~~---~~e~G~~~v~~~~~~-----------~l~~~~----~~~~~~~v~~~H~ 140 (531)
+ ++||||||+|||+|++++||++.... ..++|+.++++.... ..+.++ +.. +..++.|+
T Consensus 78 ~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~--~~~~~~h~ 155 (227)
T 2abw_A 78 VLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKD--LTAACIRA 155 (227)
T ss_dssp TSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTT--CEEEEESC
T ss_pred hcCCEEEEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCccccccccccccccccccCCCc--eeEEEEEc
Confidence 8 99999999999999999999874432 456777666554321 112233 244 78899999
Q ss_pred CccccC-CCCcEEEEEeC-----CCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 141 DEAVVL-PDGFEVVARSQ-----QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 141 ~~v~~l-p~g~~vla~s~-----~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+.|..+ |++++++|.++ ++.++|++. +++||+|||||++++ .+++++|+ +.|
T Consensus 156 ~~v~~~~~~~~~vla~~~~~~~g~~~~~a~~~--~~v~gvQfHPE~~~~---~~l~~~Fl-~~~ 213 (227)
T 2abw_A 156 PYIREILSDEVKVLATFSHESYGPNIIAAVEQ--NNCLGTVFHPELLPH---TAFQQYFY-EKV 213 (227)
T ss_dssp CEEEEECCTTCEEEEEEEETTTEEEEEEEEEE--TTEEEESSCGGGSSC---CHHHHHHH-HHH
T ss_pred ceEeecCCCCcEEEEEcccccCCCCceEEEEE--CCEEEEEECCeeCCC---cHHHHHHH-HHH
Confidence 998887 99999999986 577889885 679999999999875 48999998 555
|
| >3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-24 Score=212.05 Aligned_cols=201 Identities=17% Similarity=0.240 Sum_probs=139.7
Q ss_pred ccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 206 LENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 206 ~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
++...+.++..|++++.. .++++|++|||+||+++++++++++|.++++++++++..+..+.+.+.+ +|+.+|++++
T Consensus 6 ~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~g~~v~av~~~~~~~~~~~~~~a~~-~a~~lgi~~~ 84 (249)
T 3p52_A 6 WQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQISNKANLEDALR-LCADLNLEYK 84 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHHTTSEEEEECCSCCSSCHHHHHHHH-HHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHH-HHHHhCCCEE
Confidence 444556777778887654 4689999999999999999999999999999999999887778777776 8999999999
Q ss_pred EEECchHHHHhhcCCC--CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccc
Q 039743 284 CVDATDQFLSKLKGVI--DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIK 361 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~--~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ik 361 (531)
++++++.+......+. ++...|.++.+.++..+..+|++.| +..+.+|+ .+|.. .|. .
T Consensus 85 ~v~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g------~~vl~tgn-~se~~-----~g~--------~ 144 (249)
T 3p52_A 85 IIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKN------SLVIGTSN-KSELL-----LGY--------G 144 (249)
T ss_dssp ECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTT------EEEBCCCC-HHHHH-----HTC--------S
T ss_pred EEECcHHHHHHHHhccccCCccHhHHHHHHHHHHHHHHHHHCC------CeEEeCCC-HHHHH-----ccc--------h
Confidence 9999876544444332 3334555666667788999999887 55555554 44432 122 3
Q ss_pred cccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHH
Q 039743 362 SHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQ 439 (531)
Q Consensus 362 t~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~ 439 (531)
|.++.+. .+++||.+++|+|||++|+++|+|++++.+.|+ +||. +|+.+++.|+-.++..|.++..
T Consensus 145 t~~gd~~-------~~i~PL~~l~K~eV~~la~~~gip~~i~~k~ps--a~L~---~~q~de~~lg~~y~~ld~~l~~ 210 (249)
T 3p52_A 145 TIYGDLA-------CAFNPIGSLYKSEIYALAKYLNLHENFIKKAPS--ADLW---ENQSDEADLGFSYTKIDEGLKA 210 (249)
T ss_dssp CTTTTTC-------CSEETTTTSCHHHHHHHHHHTTCCHHHHHC----------------------CCCCHHHHHHHH
T ss_pred hhhcccc-------CccccccCCcHHHHHHHHHHcCCcHHhcCCCCC--cccC---CCCCCHHHcCCCHHHHHHHHHH
Confidence 3344332 389999999999999999999999777666554 4553 5899999884488888888643
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=232.78 Aligned_cols=184 Identities=19% Similarity=0.182 Sum_probs=131.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCC------hhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCC
Q 039743 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCS------LDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNG 81 (531)
Q Consensus 8 I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~------~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~ 81 (531)
++++|.+.++...+.+...+.|+.+.+.+.+.. .++. ..++|||||||||+++... -...+++++.+++
T Consensus 310 v~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~-L~~~DGIILpGGfGd~~~~----g~i~~ir~a~e~~ 384 (550)
T 1vco_A 310 VKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEA-FRDVSGILVPGGFGVRGIE----GKVRAAQYARERK 384 (550)
T ss_dssp C---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHH-TTTCSCEEECCCCSSTTHH----HHHHHHHHHHHTT
T ss_pred EEEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHH-HhcCCEEEECCCCCCcchh----hhHHHHHHHHHCC
Confidence 445677766777788888888999998876542 1122 4679999999998864221 1236778888889
Q ss_pred CcEEEeeHHHHHHHHHcCCEEeecCc---cc---------------------------ceeeeEEEecCCccccCCCCCc
Q 039743 82 VYVLGICYGLQLMVQKLDGVVKVGEK---QE---------------------------YGRMEILVERSSGIFGNKKVGH 131 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~GG~v~~~~~---~e---------------------------~G~~~v~~~~~~~l~~~~~~~~ 131 (531)
+|+||||+|||+|+.++||++.+... .| +|++++.+.+++ ++..+....
T Consensus 385 iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~s-~l~~iy~~~ 463 (550)
T 1vco_A 385 IPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGT-LLHRLYGKE 463 (550)
T ss_dssp CCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTS-HHHHHHCCS
T ss_pred CcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEccCc-hhhHhcCCc
Confidence 99999999999999999988764320 01 255566665443 332232221
Q ss_pred eEEEEeeccCccc-----cCC-CCcEEEEEeCCC------cEEEEEECCCcEE-EEecCCCCCCCcc-cchhhhhheecc
Q 039743 132 HQVVWMSHGDEAV-----VLP-DGFEVVARSQQG------AVAAVENREKRLF-GLQYHPEVTHSPE-GMETLRYFLFDV 197 (531)
Q Consensus 132 ~~~v~~~H~~~v~-----~lp-~g~~vla~s~~~------~v~ai~~~~~~i~-gvQFHPE~~~~~~-g~~i~~~F~~~~ 197 (531)
.+..++.|++.|. .++ ++++++|.++++ .++|++++++++| |+|||||+++++. |..||++|+ +.
T Consensus 464 ~v~e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv-~a 542 (550)
T 1vco_A 464 EVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFV-EA 542 (550)
T ss_dssp EEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHH-HH
T ss_pred eeeeeccceEEEchHHhhccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHH-HH
Confidence 2345778888773 455 799999999874 8999999988988 9999999998774 999999998 55
Q ss_pred c
Q 039743 198 C 198 (531)
Q Consensus 198 ~ 198 (531)
|
T Consensus 543 a 543 (550)
T 1vco_A 543 A 543 (550)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-24 Score=209.94 Aligned_cols=203 Identities=19% Similarity=0.250 Sum_probs=147.7
Q ss_pred ccccccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCC
Q 039743 202 AGWKLENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLH 279 (531)
Q Consensus 202 ~~w~~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lg 279 (531)
++++++..++.++..|++++.. .++++|++|||+||++++++++++.+..+ +++++++..+..+.+.+.+ +|+.+|
T Consensus 5 ~~~~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~~~~~~~~~-av~~~~~~~~~~~~~~a~~-~a~~lg 82 (249)
T 3fiu_A 5 KDFSPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTGLPTT-ALILPSDNNQHQDMQDALE-LIEMLN 82 (249)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHTTSCEE-EEECCCTTSCHHHHHHHHH-HHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHhCCCCE-EEEecCCCCCHHHHHHHHH-HHHHhC
Confidence 3567777888888999988743 36899999999999999999999865555 9999999877778777776 899999
Q ss_pred CcEEEEECchHHHHhhcCC---CC-cccccchh-----hHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCC
Q 039743 280 LPVTCVDATDQFLSKLKGV---ID-PETKRKII-----GKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPP 350 (531)
Q Consensus 280 i~~~vvd~~~~f~~~l~~~---~~-p~~kr~~~-----~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~ 350 (531)
++++++++++.|......+ .+ +...+..+ .+.++..+..+|++.| +..+++| |+++.. .
T Consensus 83 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g------~~vl~TG-n~sE~~-----~ 150 (249)
T 3fiu_A 83 IEHYTISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYN------RIVIGTD-NACEWY-----M 150 (249)
T ss_dssp CEEEECCCHHHHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHT------EEEBCCC-CHHHHH-----H
T ss_pred CCEEEEEChHHHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcC------CEEEECC-CHHHHh-----c
Confidence 9999999987654432211 11 11122222 3445667888888887 6666677 454332 1
Q ss_pred CCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHH
Q 039743 351 GTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDIL 430 (531)
Q Consensus 351 g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~ 430 (531)
|. .|.+++++ .+++||.+++|.|||++|+++|+|++++.+.|+ +||. .|+.+++.|+-.+
T Consensus 151 G~--------~t~~gd~~-------~~i~PL~~l~K~eVr~lA~~lglp~~i~~k~ps--a~L~---~~q~de~~lg~~y 210 (249)
T 3fiu_A 151 GY--------FTKFGDGA-------ADILPLVNLKKSQVFELGKYLDVPKNILDKAPS--AGLW---QGQTDEDEMGVTY 210 (249)
T ss_dssp TC--------SCTTTTTC-------CSBCTTTTCCHHHHHHHHHHTTCCHHHHHSCCC--CCSS---TTCCHHHHHTSCH
T ss_pred Cc--------hhccCCCC-------cceeecccCcHHHHHHHHHHcCCcHHHccCCCC--CccC---CCCCCHHHcCCCH
Confidence 22 44455432 399999999999999999999999766666554 4553 3899999994499
Q ss_pred hhhhHHHH
Q 039743 431 RQVDEIFI 438 (531)
Q Consensus 431 ~~~d~~~~ 438 (531)
+.+|.+|.
T Consensus 211 ~~ld~~l~ 218 (249)
T 3fiu_A 211 QEIDDFLD 218 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999953
|
| >1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-23 Score=207.23 Aligned_cols=209 Identities=22% Similarity=0.181 Sum_probs=140.8
Q ss_pred ccccccccccccchhhhhhhhhhccccCc---cceeeccCCCCCHHHHHHHHHHHh----------CCcEEEEEEeCCCC
Q 039743 196 DVCGVNAGWKLENVLDEEVKCIKDTVGLE---DHVICALSGGVDSTVAATLVHKAI----------GDRLHCVFVDNGLL 262 (531)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~~i~~~v~~~---~kvvvalSGGvDS~v~a~l~~k~~----------g~~v~~v~id~g~~ 262 (531)
+..++.++|+++..++..+..|++++... ++++|++|||+||+|+|+|+++++ +.+++|++++++..
T Consensus 9 ~~~~~~~~~~~~~~i~~~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~ 88 (275)
T 1wxi_A 9 KALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQ 88 (275)
T ss_dssp HHHTCCSCCCHHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSC
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCc
Confidence 45588899999999999999999998543 489999999999999999999986 23899999997743
Q ss_pred ChhHHHHHHHHHHHhCCC-cEEEEECchHH---HHhhcCCCCcccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEE
Q 039743 263 RYKERERVMDTFEKDLHL-PVTCVDATDQF---LSKLKGVIDPETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYL 334 (531)
Q Consensus 263 ~~~e~~~~~~~la~~lgi-~~~vvd~~~~f---~~~l~~~~~p~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l 334 (531)
.+.+++.+ +|+.+|+ +|+++++++.+ .+.+.. .+++...+..||. +..++..+|.+.| ++
T Consensus 89 --~~~~dA~~-va~~lgi~~~~~i~i~~~~~~~~~~l~~-~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g--------~l 156 (275)
T 1wxi_A 89 --ADEQDCQD-AIAFIQPDRVLTVNIKGAVLASEQALRE-AGIELSDFVRGNEKARERMKAQYSIAGMTS--------GV 156 (275)
T ss_dssp --TTHHHHHH-HHHHHCCSEEEECCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHHHHHTT--------EE
T ss_pred --cCHHHHHH-HHHHcCCCeEEEEecHHHHHHHHHHHHh-cCCCCCCchhhhhhhhHHHHHHHHHHHHCC--------CE
Confidence 35667766 8999999 99999998544 333321 0111122344454 2335556666554 34
Q ss_pred EecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCcc
Q 039743 335 VQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLA 414 (531)
Q Consensus 335 ~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la 414 (531)
+.||. +..|. ..|+ .|.++++ ..++.||.+|+|+|||++|+++|+|.+++.+.|+ +||.
T Consensus 157 vlgTg--n~~E~--~~Gy--------~t~~gd~-------~~~~~PL~~l~K~eVr~la~~lglp~~i~~k~ps--a~L~ 215 (275)
T 1wxi_A 157 VVGTD--HAAEA--ITGF--------FTKYGDG-------GTDINPLYRLNKRQGKQLLAALACPEHLYKKAPT--ADLE 215 (275)
T ss_dssp EBCCC--CHHHH--TTTC--------SCTTTTT-------CCSBCTTTTCCHHHHHHHHHHTTCCGGGTSCC--------
T ss_pred EEECc--cHHHH--ccCc--------ccccCCC-------ccceeeccCCCHHHHHHHHHHhCCcHhhccCCCC--Cccc
Confidence 44552 22232 1233 3444432 2489999999999999999999999777777654 5687
Q ss_pred ccccCCCCcchHHHHHhhhhHHH
Q 039743 415 VRVLGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 415 ~r~~g~vt~~~l~~~~~~~d~~~ 437 (531)
.+.+|+.|++.|+-.++++|.++
T Consensus 216 ~~~~~q~De~~lg~~Y~~lD~~l 238 (275)
T 1wxi_A 216 DDRPSLPDEVALGVTYDNIDDYL 238 (275)
T ss_dssp -------CHHHHSSCHHHHHHHH
T ss_pred CCCCCCCCHHHhCCCHHHHHHHH
Confidence 77789999999944899999985
|
| >2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=201.92 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=133.3
Q ss_pred CEEEEEeCCC---CcHHHHHHHHHHCCCEEEEEeCCC------------------ChhccccCCCCEEEEcCCCCCCCC-
Q 039743 6 ELVLILDYGS---QYTHLITRRIRSLSILSLCLSGTC------------------SLDDITAKNPRVVILSGGPHSVHS- 63 (531)
Q Consensus 6 ~~I~IlD~G~---~~~~~i~r~l~~~G~~~~v~~~~~------------------~~~~~~~~~~dgiIlsGGp~s~~~- 63 (531)
.+|+||+.=. +|...+.|.|...+..+++..+.. +++++...++||+|++|||.+.++
T Consensus 48 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~~~ 127 (312)
T 2h2w_A 48 LEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELLPF 127 (312)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTSCG
T ss_pred ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCCCC
Confidence 4899997632 345567788877776666543322 133333467999999999986543
Q ss_pred CCCCCChH--HHHHHHHhCCCcEEEeeHHHHHHHHHcCC-EEeecCcccceeeeEEEecCCccccCCCCCceEEEEeecc
Q 039743 64 PDAPAFPA--GFLEWALSNGVYVLGICYGLQLMVQKLDG-VVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHG 140 (531)
Q Consensus 64 ~~~~~~~~--~l~~~~~~~~iPvLGIC~G~Qlla~~~GG-~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~ 140 (531)
++.+++.. ++++++.++++|+||||+|+|+++.++|| .....+.+++|+..++++..++|++++++. +.+.++|+
T Consensus 128 ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~~~pL~~g~~~~--f~vphsr~ 205 (312)
T 2h2w_A 128 EEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVYKHRVAKDSVLFRGHDDF--FWAPHSRY 205 (312)
T ss_dssp GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEESSCCGGGTTCCSE--EEEEEEEE
T ss_pred ccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEEEEEEcCCCccccCCCCc--eEeeEEec
Confidence 23456554 78899999999999999999997776666 444456779999999988878999999887 89998854
Q ss_pred -----CccccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCC
Q 039743 141 -----DEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 141 -----~~v~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
+.|..+ +|++++|.|+.|.+++++.++++++|+|||||++..
T Consensus 206 ~e~~~~~v~~~-pga~vLA~S~~~~~q~~~~~~~~~~~vQgHPEyd~~ 252 (312)
T 2h2w_A 206 TEVKKEDIDKV-PELEILAESDEAGVYVVANKSERQIFVTGHPEYDRY 252 (312)
T ss_dssp EECCHHHHTTC-C-CEEEEEETTTEEEEEECSSSSEEEECSCTTCCTT
T ss_pred cccCHHHccCC-CCCEEEEcCCCCcceEEEecCCCEEEEECCCCCCHH
Confidence 334444 599999999999999999877899999999999975
|
| >3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-23 Score=206.10 Aligned_cols=210 Identities=20% Similarity=0.182 Sum_probs=147.2
Q ss_pred eccccccccccccchhhhhhhhhhccccCc--cceeeccCCCCCHHHHHHHHHHH---hC-------CcEEEEEEeCCCC
Q 039743 195 FDVCGVNAGWKLENVLDEEVKCIKDTVGLE--DHVICALSGGVDSTVAATLVHKA---IG-------DRLHCVFVDNGLL 262 (531)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~--~kvvvalSGGvDS~v~a~l~~k~---~g-------~~v~~v~id~g~~ 262 (531)
+++|++.+.|+++..++..+.+|++++... ++++|++|||+||++++++++++ +| .+++|++++++.
T Consensus 9 ~~~~~~~~~~~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~- 87 (279)
T 3q4g_A 9 REEMRVLPSIDPQFEIERRVAFIKRKLTEARYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGE- 87 (279)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSS-
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCC-
Confidence 489999999999999999999999998644 68999999999999999998776 33 489999999774
Q ss_pred ChhHHHHHHHHHHHhCCC-cEEEEECchHHHH-------hhc-------CCC-CcccccchhhHHHHHHHHHHHHHhhhh
Q 039743 263 RYKERERVMDTFEKDLHL-PVTCVDATDQFLS-------KLK-------GVI-DPETKRKIIGKEFICIFDAFAHDLEQK 326 (531)
Q Consensus 263 ~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~-------~l~-------~~~-~p~~kr~~~~~~~~~~~~~~a~~~g~~ 326 (531)
..+.+++.+ +|+.+|+ +++++++++.|.. .+. +.. ++..++++..+.+..+++.+|.+.|
T Consensus 88 -~~~~~~A~~-~a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g-- 163 (279)
T 3q4g_A 88 -QKDEDEAQL-ALSFIRPTHSVSVNIKAGVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVG-- 163 (279)
T ss_dssp -CSCHHHHHH-HHHHHCCSEEEECCCHHHHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred -hHHHHHHHH-HHHHhCCCeEEEEECHHHHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCC--
Confidence 334566665 8999999 8999999866543 221 111 1112333444445567778887766
Q ss_pred cCCCCcEEEecc-cCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCcccccc
Q 039743 327 LGKKPAYLVQGT-LYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKR 405 (531)
Q Consensus 327 ~~~~~~~l~~Gt-~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~ 405 (531)
+++.|| |+++.. .|+ .|++++++- .+.||.+++|.|||++|+++|+|+.++.+
T Consensus 164 ------~lVlgTgn~sE~~-----~Gy--------~TkyGD~~~-------di~Pl~dl~Kt~Vr~LA~~lgiP~~i~~K 217 (279)
T 3q4g_A 164 ------GLVLGTDHSAENI-----TGF--------YTKFGDGAC-------DLAPLFGLNKRQVRLLAKTLGAPEQLVYK 217 (279)
T ss_dssp ------EEEBCCCCHHHHH-----HTC--------SCTTTTTCC-------SBCTTTTCCHHHHHHHHHHTTCCHHHHTC
T ss_pred ------CEEecCccHHhhh-----ccc--------hhhcCCccc-------ceeecCCCcHHHHHHHHHHhCCcHHHhcC
Confidence 477777 233221 233 677777544 89999999999999999999999877777
Q ss_pred CCCCCCCccccccCCCCcchHHHHHhhhhHHH
Q 039743 406 HPFPGPGLAVRVLGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 406 ~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~ 437 (531)
.|+ +||---.+|+.+++.|+-.++..|.+|
T Consensus 218 ~PS--a~L~~~~~~q~DE~~lg~~Y~~lD~~L 247 (279)
T 3q4g_A 218 TPT--ADLEELAPQKADEAALNLTYEQIDDFL 247 (279)
T ss_dssp CCS--CCC-------------CCCHHHHHHHH
T ss_pred CCC--CCcCCCCCCCCCHHHcCCCHHHHHHHH
Confidence 654 456322379999999955999999995
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-23 Score=224.31 Aligned_cols=174 Identities=20% Similarity=0.209 Sum_probs=122.2
Q ss_pred HHHHHHHHHCCC----EEEEEeCCCC-hh-cc--ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHH
Q 039743 19 HLITRRIRSLSI----LSLCLSGTCS-LD-DI--TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYG 90 (531)
Q Consensus 19 ~~i~r~l~~~G~----~~~v~~~~~~-~~-~~--~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G 90 (531)
.++.++|+.+|+ .+++.+.+.. .+ ++ ...++|||||||||+++... -...+++.+.++++|+||||+|
T Consensus 306 ~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~~~----g~~~~i~~a~~~~~PiLGIClG 381 (545)
T 1s1m_A 306 KSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVE----GMITTARFARENNIPYLGICLG 381 (545)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTHH----HHHHHHHHHHHTTCCEEEETHH
T ss_pred HHHHHHHHHhCcccCCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCccch----hhHHHHHHHHHCCCcEEEECCh
Confidence 567888887775 4566655421 11 11 14679999999999864321 1235777888889999999999
Q ss_pred HHHHHHHcCCEEeecCc---cc-------------------------------------ceeeeEEEecCCccccCCCCC
Q 039743 91 LQLMVQKLDGVVKVGEK---QE-------------------------------------YGRMEILVERSSGIFGNKKVG 130 (531)
Q Consensus 91 ~Qlla~~~GG~v~~~~~---~e-------------------------------------~G~~~v~~~~~~~l~~~~~~~ 130 (531)
||+|+.++||++.+.+. .| +|++.+.+.+++.+.+.+...
T Consensus 382 ~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~l~~iyg~~ 461 (545)
T 1s1m_A 382 MQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAP 461 (545)
T ss_dssp HHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCHHHHHTTSS
T ss_pred HHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEeccCCHHHHhcCCc
Confidence 99999999998864321 11 244445554444443333322
Q ss_pred ceEEEEeeccCcc-----ccC-CCCcEEEEEeCCC-cEEEEEECCCcEE-EEecCCCCCCCcc-cchhhhhheeccc
Q 039743 131 HHQVVWMSHGDEA-----VVL-PDGFEVVARSQQG-AVAAVENREKRLF-GLQYHPEVTHSPE-GMETLRYFLFDVC 198 (531)
Q Consensus 131 ~~~~v~~~H~~~v-----~~l-p~g~~vla~s~~~-~v~ai~~~~~~i~-gvQFHPE~~~~~~-g~~i~~~F~~~~~ 198 (531)
.+..++.|++.| ..+ ++|++++|.++++ .++|++++++++| |+|||||+.+++. |..||++|+ +.|
T Consensus 462 -~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv-~aa 536 (545)
T 1s1m_A 462 -TIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFV-KAA 536 (545)
T ss_dssp -EEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHH-HHH
T ss_pred -eEEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHH-HHH
Confidence 234456677666 234 4899999999998 8999999988877 9999999998775 899999998 555
|
| >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-23 Score=217.75 Aligned_cols=186 Identities=18% Similarity=0.214 Sum_probs=130.8
Q ss_pred EEEEE----eCCCCcHHHHHHHHH----HCCCEEEEEeCCCC-hhc------cccCCCCEEEEcCCCCCCCCCCCCCChH
Q 039743 7 LVLIL----DYGSQYTHLITRRIR----SLSILSLCLSGTCS-LDD------ITAKNPRVVILSGGPHSVHSPDAPAFPA 71 (531)
Q Consensus 7 ~I~Il----D~G~~~~~~i~r~l~----~~G~~~~v~~~~~~-~~~------~~~~~~dgiIlsGGp~s~~~~~~~~~~~ 71 (531)
+|+++ +.-+.|. ++..+|+ +++..+.+.+.+.. +++ -.+.++||||+|||++.... .-..
T Consensus 295 ~IalVGKY~~l~DaY~-Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~~~~----~g~i 369 (535)
T 3nva_A 295 NIALVGKYTKLKDSYI-SIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSRGA----EGKI 369 (535)
T ss_dssp EEEEEESCTTSGGGGH-HHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSSTTH----HHHH
T ss_pred EEEEEecCcCCchhHH-HHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCCccH----HHHH
Confidence 58887 2334452 4455554 55677777665432 111 11467999999999874211 1123
Q ss_pred HHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeecC------------------------------cccceeeeEEEecCC
Q 039743 72 GFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGE------------------------------KQEYGRMEILVERSS 121 (531)
Q Consensus 72 ~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~------------------------------~~e~G~~~v~~~~~~ 121 (531)
.+++.+.++++|+||||+|||+|+.++||+|.... .+.+|.+++.+.+++
T Consensus 370 ~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v~l~~gS 449 (535)
T 3nva_A 370 KAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILKEGT 449 (535)
T ss_dssp HHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEEEECTTS
T ss_pred HHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEEEEcCCC
Confidence 56788888899999999999999999999883200 113467778888887
Q ss_pred ccccCCCCCceEEEEeeccCccc-----cC-CCCcEEEEEeCCCcEEEEEECCCc-EEEEecCCCCCCCc-ccchhhhhh
Q 039743 122 GIFGNKKVGHHQVVWMSHGDEAV-----VL-PDGFEVVARSQQGAVAAVENREKR-LFGLQYHPEVTHSP-EGMETLRYF 193 (531)
Q Consensus 122 ~l~~~~~~~~~~~v~~~H~~~v~-----~l-p~g~~vla~s~~~~v~ai~~~~~~-i~gvQFHPE~~~~~-~g~~i~~~F 193 (531)
.+.+.+... .+.-.+.|++.|. .+ ++|++++|+++|+.++|+++++++ ++|+|||||+.+++ .+..+|++|
T Consensus 450 ~L~~iyG~~-~I~erHrHryeVNs~h~q~l~~~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~LF~~F 528 (535)
T 3nva_A 450 IAYQLYGKK-VVYERHRHRYEVNPKYVDILEDAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGF 528 (535)
T ss_dssp HHHHHHTSS-EEEEEEEECCEECHHHHHHHHHTTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGCCSSSCCHHHHHH
T ss_pred cHHHHhCCC-eeeecccccceechHHHhhcccCCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecCCCCChhHHHHHH
Confidence 776666543 2334445555552 22 689999999999999999999888 69999999998765 589999999
Q ss_pred eecccc
Q 039743 194 LFDVCG 199 (531)
Q Consensus 194 ~~~~~~ 199 (531)
+ ++|.
T Consensus 529 v-~Aa~ 533 (535)
T 3nva_A 529 I-RAVA 533 (535)
T ss_dssp H-HHHT
T ss_pred H-HHHH
Confidence 8 6553
|
| >2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=199.23 Aligned_cols=175 Identities=17% Similarity=0.150 Sum_probs=133.2
Q ss_pred CEEEEEeCCC---CcHHHHHHHHHHCCCEEEEEeCCC------------------ChhccccCCCCEEEEcCCCCCCCC-
Q 039743 6 ELVLILDYGS---QYTHLITRRIRSLSILSLCLSGTC------------------SLDDITAKNPRVVILSGGPHSVHS- 63 (531)
Q Consensus 6 ~~I~IlD~G~---~~~~~i~r~l~~~G~~~~v~~~~~------------------~~~~~~~~~~dgiIlsGGp~s~~~- 63 (531)
.+|+||+.=. +|...+.|.|...+..+++..+.. +++++...++||+|++|||.+.++
T Consensus 36 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~~~ 115 (301)
T 2vdj_A 36 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSF 115 (301)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTSCG
T ss_pred ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCCCc
Confidence 4899997632 344556777766665555533322 133333467999999999986543
Q ss_pred CCCCCChH--HHHHHHHhCCCcEEEeeHHHHHHHHHcCC-EEeecCcccceeeeEEEec-CCccccCCCCCceEEEEee-
Q 039743 64 PDAPAFPA--GFLEWALSNGVYVLGICYGLQLMVQKLDG-VVKVGEKQEYGRMEILVER-SSGIFGNKKVGHHQVVWMS- 138 (531)
Q Consensus 64 ~~~~~~~~--~l~~~~~~~~iPvLGIC~G~Qlla~~~GG-~v~~~~~~e~G~~~v~~~~-~~~l~~~~~~~~~~~v~~~- 138 (531)
++.+++.. ++++++.++++|+||||+|+|+++.++|| .....+.+++|+..++++. .++|++++++. +.+.++
T Consensus 116 ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~~~~pL~~g~~~~--f~~phsr 193 (301)
T 2vdj_A 116 EEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHEVREQHVKLLQGFDEL--FFAVHSR 193 (301)
T ss_dssp GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCSSCGGGTTCCSE--EEEEEEE
T ss_pred ccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCCCCEEEEEEEEecCCCCccccCCCCc--eEeeeEe
Confidence 23456554 78999999999999999999996666655 4445567799999988764 57899999887 888887
Q ss_pred ----ccCccccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCC
Q 039743 139 ----HGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183 (531)
Q Consensus 139 ----H~~~v~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~ 183 (531)
|.+.|..+| |++++|.|+.|.+++++.++++++|+|||||++..
T Consensus 194 ~~~~~~~~v~~~p-ga~vLA~S~~~~~~~~~~~~~~~~~vQgHpEyd~~ 241 (301)
T 2vdj_A 194 HTEVRESDIREVK-ELTLLANSEEAGVHLVIGQEGRQVFALGHSEYSCD 241 (301)
T ss_dssp EEECCHHHHHTCT-TEEEEEEETTTEEEEEEEGGGTEEEECSCTTCCTT
T ss_pred ccCcCHHHccCCC-CCEEEEeCCCCcceEEEecCCCEEEEECCCCCCHH
Confidence 446677775 99999999999999999877889999999999975
|
| >1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-23 Score=203.10 Aligned_cols=210 Identities=17% Similarity=0.118 Sum_probs=150.4
Q ss_pred ccccccccccccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC--------CcEEEEEEeCCCCChh
Q 039743 196 DVCGVNAGWKLENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG--------DRLHCVFVDNGLLRYK 265 (531)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g--------~~v~~v~id~g~~~~~ 265 (531)
+..++.++|+++..+++.+..|++++.. .++|+|++|||+||+++++|++++.+ .++++++++++.. .
T Consensus 8 ~~~~~~~~~~~~~~i~~~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~~~~~~~--~ 85 (271)
T 1kqp_A 8 RELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQ--Q 85 (271)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSSC--T
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEeCCCCC--C
Confidence 4568899999999999999999999843 46899999999999999999998853 5899999997643 3
Q ss_pred HHHHHHHHHHHhCCC-cEEEEECchHHH---HhhcCCCCcccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEEEec
Q 039743 266 ERERVMDTFEKDLHL-PVTCVDATDQFL---SKLKGVIDPETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYLVQG 337 (531)
Q Consensus 266 e~~~~~~~la~~lgi-~~~vvd~~~~f~---~~l~~~~~p~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l~~G 337 (531)
+.+++.+ +|+.+|+ +|+++++++.+. +.+....++....+..||. +...+..+|.+.+ +..+.+|
T Consensus 86 d~~~A~~-va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g------~lvl~tg 158 (271)
T 1kqp_A 86 DEDDAQL-ALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEG------LLVLGTD 158 (271)
T ss_dssp THHHHHH-HHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHT------CEEBCCC
T ss_pred CHHHHHH-HHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCC------CEEEECc
Confidence 5666665 8999999 999999985442 2222110111122333443 2335566777665 4333333
Q ss_pred ccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccc
Q 039743 338 TLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRV 417 (531)
Q Consensus 338 t~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~ 417 (531)
+ +++. +.|+ .|.++.+ ..++.||.+|+|+|||++|+++|+|.+++.+.|+ +||..+.
T Consensus 159 n-~~E~-----~~Gy--------~t~~gd~-------~~~~~Pl~~l~K~eVr~la~~lglp~~i~~k~ps--a~L~~~~ 215 (271)
T 1kqp_A 159 H-AAEA-----VTGF--------FTKYGDG-------GADLLPLTGLTKRQGRTLLKELGAPERLYLKEPT--ADLLDEK 215 (271)
T ss_dssp C-HHHH-----TTTC--------SCTTTTT-------CCSBCTTTTCCHHHHHHHHHHTTCCTHHHHSCCB--CCCCSSS
T ss_pred c-HHHh-----ccCC--------ccccccc-------cccccccccCCHHHHHHHHHHcCCCHhhccCCCC--cccccCC
Confidence 2 3322 2333 3444432 2489999999999999999999999777777664 6688877
Q ss_pred cCCCCcchHHHHHhhhhHHH
Q 039743 418 LGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 418 ~g~vt~~~l~~~~~~~d~~~ 437 (531)
+|+.|++.|+-.++++|.++
T Consensus 216 ~~q~De~~lg~~Y~~ld~~l 235 (271)
T 1kqp_A 216 PQQSDETELGISYDEIDDYL 235 (271)
T ss_dssp TTCBHHHHHSSCHHHHHHHH
T ss_pred CCCCCHHHhCCCHHHHHHHH
Confidence 89999999944899999995
|
| >2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=200.03 Aligned_cols=199 Identities=22% Similarity=0.296 Sum_probs=149.5
Q ss_pred cccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 205 KLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 205 ~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
+++.+.+...+.|+++ + .++++|++|||+||+++++++++++| .+++++++++|.. .+.+.+.+ +|+.+|++++
T Consensus 5 ~~~~~~~~l~~~i~~~-~-~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~--~~~~~a~~-~a~~lgi~~~ 79 (257)
T 2e18_A 5 DYDKVIERILEFIREK-G-NNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFEN--KDVEDAKL-VAEKLGIGYK 79 (257)
T ss_dssp CHHHHHHHHHHHHHHH-C-TTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCS--THHHHHHH-HHHHHTCEEE
T ss_pred CHHHHHHHHHHHHHHh-C-CCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCc--hHHHHHHH-HHHHhCCCEE
Confidence 3455667778888887 4 78999999999999999999999987 8999999999964 66677765 8999999999
Q ss_pred EEECchH---HHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccc
Q 039743 284 CVDATDQ---FLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360 (531)
Q Consensus 284 vvd~~~~---f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~i 360 (531)
+++++.. |.+.+....++...+.++.+.++..+.+.|++.| +..+++|++.+|... .
T Consensus 80 ~i~i~~~~~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~g------~~vl~tg~~~e~~~G------y-------- 139 (257)
T 2e18_A 80 VINIKPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLG------RIVLGTSNRSEFLTG------Y-------- 139 (257)
T ss_dssp ECCCHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHT------CEEECCCCHHHHHHT------C--------
T ss_pred EEEChHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcC------CEEEEcCchhHHhcC------C--------
Confidence 9999854 4444443222322333444456678888888887 788889987655432 2
Q ss_pred ccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHHH
Q 039743 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQS 440 (531)
Q Consensus 361 kt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~ 440 (531)
.+.++. ...+++||.+++|+||+++++++|+|.+++.+.|+++ |. +++.+++.++-.++..|.++...
T Consensus 140 ~t~~g~-------~~~~i~Pl~~l~K~ev~~la~~~gip~~i~~~~ps~~--l~---~~q~de~~lg~~y~~ld~~l~~~ 207 (257)
T 2e18_A 140 FTKWGD-------GASDYAPIINLYKTEVWEIAKRIGVPERIVKKKPSAG--LW---EGQTDEDELGISYNLLDEILWRM 207 (257)
T ss_dssp SCTTST-------TCSSBCTTTTSCHHHHHHHHHHHTCCHHHHHSCCCCC--SS---TTCCHHHHHTSCHHHHHHHHHHH
T ss_pred eeccCC-------CccCEeecCCCcHHHHHHHHHHcCCCHHHhCCCCCCC--cC---CCCcCHhhcCCCHHHHHHHHHHH
Confidence 122222 2358999999999999999999999988888877665 32 28888888843888888886553
|
| >2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-22 Score=213.27 Aligned_cols=186 Identities=18% Similarity=0.280 Sum_probs=130.5
Q ss_pred cCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCC-CCChhHHHHHHHHHHHhC-----CCcEEEEECchHHHHhh
Q 039743 222 GLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNG-LLRYKERERVMDTFEKDL-----HLPVTCVDATDQFLSKL 295 (531)
Q Consensus 222 ~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g-~~~~~e~~~~~~~la~~l-----gi~~~vvd~~~~f~~~l 295 (531)
+..+++++|+|||+||+++++++++. |.+++|+|+|++ +.++.+.+.+.+ +|+.+ |++++++++++.+....
T Consensus 185 ~~~~kvlvalSGGvDS~vll~ll~~~-G~~v~av~v~~~~~~~~~~~~~v~~-~a~~l~~~~ggi~~~vv~~~~~~~~i~ 262 (413)
T 2c5s_A 185 GVGGKVMVLLSGGIDSPVAAYLTMKR-GVSVEAVHFHSPPFTSERAKQKVID-LAQELTKYCKRVTLHLVPFTEVQKTIN 262 (413)
T ss_dssp TTTEEEEEECCSSSHHHHHHHHHHHB-TEEEEEEEEECTTTSCHHHHHHHHH-HHHHHGGGSSCEEEEEEECHHHHHHHH
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHHc-CCcEEEEEEeCCCCCCHHHHHHHHH-HHHHHHHhCCCCeEEEEECcHHHHHHH
Confidence 34678999999999999999999986 999999999986 333445555554 67777 89999999987654322
Q ss_pred cCCCCcccccch-hhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 296 KGVIDPETKRKI-IGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 296 ~~~~~p~~kr~~-~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
.+. |+..+|+ +.+.+++.+.++|++.| +++|++||+++|+.++ +..|+.+++....
T Consensus 263 ~~~--~~~~~c~~~Rr~~~~~~~~~A~~~g------~~~I~tG~~~dD~ae~---------------~l~~l~~~~~~~~ 319 (413)
T 2c5s_A 263 KEI--PSSYSMTVMRRMMMRITERIAEERN------ALAITTGESLGQVASQ---------------TLDSMHTINEVTN 319 (413)
T ss_dssp HHS--CGGGHHHHHHHHHHHHHHHHHHHTT------CCEEECCCCSSSTTSC---------------CHHHHHHHGGGCC
T ss_pred hcC--CcccHHHHHHHHHHHHHHHHHHHcC------CCEEEEcccchhhHHH---------------HHHHHhcccccCC
Confidence 222 2222344 44457778889999888 8999999999998763 1122222333345
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccc-c-CCCCcchHHHHHhhhhHHH
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRV-L-GDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~-~-g~vt~~~l~~~~~~~d~~~ 437 (531)
..+++||..++|+||+++|+++|++. .+.+|++++| .|+ + +.+|++++ +.++++|..+
T Consensus 320 ~~virPL~~l~K~eI~~~a~~~Gl~~--~~~~p~~~~c--~~~~~~~~~t~~~l-~~l~~~E~~l 379 (413)
T 2c5s_A 320 YPVIRPLITMDKLEIIKIAEEIGTYD--ISIRPYEDCC--TVFTPASPATKPKR-EKANRFEAKY 379 (413)
T ss_dssp SCEECTTTTCCHHHHHHHHHHTTCHH--HHTSCC----------------CCCH-HHHHHHHTTS
T ss_pred CEEEeccCCCCHHHHHHHHHHcCCCc--cccCCCCCCC--eeeCCCCCchHHHH-HHHHHHHHhc
Confidence 67999999999999999999999974 3357888877 465 4 67999999 8888877664
|
| >1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-21 Score=194.55 Aligned_cols=200 Identities=19% Similarity=0.285 Sum_probs=145.5
Q ss_pred ccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 206 LENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 206 ~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
++...+.....|++++.. .++++|++|||+||+++++++.++.+.++++++++++..+..+.+.+.+ +|+.+|++++
T Consensus 5 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~~~~~~~~v~av~~~~~~~~~~e~~~a~~-~a~~lgi~~~ 83 (268)
T 1xng_A 5 YQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALN-LCEKFSIPYT 83 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHH-HHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHH-HHHHcCCCEE
Confidence 445566677777777532 4689999999999999999999986689999999999877778777776 8999999999
Q ss_pred EEECchH---HHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccc
Q 039743 284 CVDATDQ---FLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTI 360 (531)
Q Consensus 284 vvd~~~~---f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~i 360 (531)
++++++. |.+.+... +|...+.++.+.++..+.+.|++.| +..|++|+. ++.. .|+
T Consensus 84 ~i~i~~~~~~~~~~~~~~-~~~~~~n~~~r~R~~~l~~~A~~~g------~~vl~tg~~-~E~~-----~Gy-------- 142 (268)
T 1xng_A 84 EYSIAPYDAIFSSHFKDA-SLTRKGNFCARLRMAFLYDYSLKSD------SLVIGTSNK-SERM-----LGY-------- 142 (268)
T ss_dssp ECCCHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHHHHHHHHT------CEEBCCCCH-HHHH-----HTC--------
T ss_pred EEeChHHHHHHHHHhhhc-CCchHHHHHHHHHHHHHHHHHHHCC------CEEEECCcH-HHHh-----cCc--------
Confidence 9999864 33333321 2333333444456678888888887 667777753 2221 122
Q ss_pred ccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHH
Q 039743 361 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQ 439 (531)
Q Consensus 361 kt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~ 439 (531)
.+.++. ...+++||.+++|+||+++++++|+|..++.+.|++ ||. +++.+++.++-.++..|.++..
T Consensus 143 ~t~~gd-------~~~~i~PL~~l~K~ev~~la~~~gip~~i~~k~psa--~l~---~~q~de~~lg~~y~~ld~~l~~ 209 (268)
T 1xng_A 143 GTLFGD-------LACAINPIGELFKTEVYELARRLNIPKKILNKPPSA--DLF---VGQSDEKDLGYPYSVIDPLLKD 209 (268)
T ss_dssp SCTTTT-------TCCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCC--CSS---TTCCHHHHHSSCHHHHHHHHHH
T ss_pred ccccCC-------CCeeEEecCCCCHHHHHHHHHHcCCcHHHhcCCCCc--CcC---CCCcchhhcCCCHHHHHHHHHH
Confidence 122222 235899999999999999999999997777776655 443 3888888884488899988644
|
| >3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-22 Score=195.64 Aligned_cols=211 Identities=21% Similarity=0.198 Sum_probs=149.4
Q ss_pred eccccccccccccchhhhhhhhhhccccCc--cceeeccCCCCCHHHHHHHHHHH---hC---C--cEEEEEEeCCCCCh
Q 039743 195 FDVCGVNAGWKLENVLDEEVKCIKDTVGLE--DHVICALSGGVDSTVAATLVHKA---IG---D--RLHCVFVDNGLLRY 264 (531)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~~i~~~v~~~--~kvvvalSGGvDS~v~a~l~~k~---~g---~--~v~~v~id~g~~~~ 264 (531)
.+.++..+.++++..++..+.+|++++.+. ++++|++|||+||++++++++++ +| . ++++++++++. .
T Consensus 15 ~~~~~~~~~~~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~~~--~ 92 (285)
T 3dpi_A 15 AAELHVSPTFDARDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYGA--Q 92 (285)
T ss_dssp HHHTTCCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSCC---
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCCCC--H
Confidence 377789999999999999999999998643 68999999999999998887765 43 2 68999998764 3
Q ss_pred hHHHHHHHHHHHhCC-CcEEEEECchHHH---Hhhc--CCC--C----cccccchhhHHHHHHHHHHHHHhhhhcCCCCc
Q 039743 265 KERERVMDTFEKDLH-LPVTCVDATDQFL---SKLK--GVI--D----PETKRKIIGKEFICIFDAFAHDLEQKLGKKPA 332 (531)
Q Consensus 265 ~e~~~~~~~la~~lg-i~~~vvd~~~~f~---~~l~--~~~--~----p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~ 332 (531)
.+.+++.+ +|+.+| ++++++|+++.|. +.+. +.. + +..++.+..+.+..+++.+|.+.|
T Consensus 93 ~~~~dA~~-~a~~lg~i~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g-------- 163 (285)
T 3dpi_A 93 HDEADARR-ALAFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARN-------- 163 (285)
T ss_dssp --CHHHHH-HHHHHCCSEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHH-HHHHcCCCcEEEEEChHHHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCC--------
Confidence 45556665 788998 7999999986643 3332 221 1 112333333445557777777665
Q ss_pred EEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCC
Q 039743 333 YLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPG 412 (531)
Q Consensus 333 ~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~ 412 (531)
+++.||. +..|. ..| ..|++++++- ++.||.+++|.||+++|+++|+|++++.+.| .+|
T Consensus 164 ~lVlgTg--n~sE~--~~G--------y~T~~GD~~~-------~~~Pl~~l~K~eV~~la~~lg~p~~i~~k~p--Sa~ 222 (285)
T 3dpi_A 164 GVVIGTD--HAAES--VMG--------FFTKFGDGGA-------DVLPLAGLTKRRVRALARMLGADEPLVLKTP--TAD 222 (285)
T ss_dssp EEEBCCC--CHHHH--HHH--------HHHCCCCCCC-------SBCTTTTCCHHHHHHHHHHTTCCHHHHTCCC--HHH
T ss_pred CEEEeCc--cHHhh--hCC--------cccccCCCce-------eEeeecCCcHHHHHHHHHHcCCCHHHhcCCC--CCC
Confidence 4777772 22231 112 3666765433 8999999999999999999999987776655 455
Q ss_pred ccccccCCCCcchHHHHHhhhhHHH
Q 039743 413 LAVRVLGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 413 la~r~~g~vt~~~l~~~~~~~d~~~ 437 (531)
|.--.+|+.+++.|+-.|++.|.+|
T Consensus 223 L~~l~~~q~DE~~lg~~Y~~lD~~L 247 (285)
T 3dpi_A 223 LETLRPQRPDEHAYGITYEQIDDFL 247 (285)
T ss_dssp HGGGSCSCC--CCCCCCHHHHHHHH
T ss_pred cccCCCCCCcHHHcCCCHHHHHHHH
Confidence 6433469999999955999999995
|
| >3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-21 Score=212.35 Aligned_cols=201 Identities=17% Similarity=0.210 Sum_probs=138.6
Q ss_pred cchhhhhhhhhhccccCc--cceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 207 ENVLDEEVKCIKDTVGLE--DHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 207 ~~~~~~~~~~i~~~v~~~--~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
+.+.+.+...|++++... ++++|++|||+||+|+|+|+++++| .++++++++++..++.+.+++.+ +|+.||++++
T Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~~~v~~v~m~~~~~~~~~~~~A~~-la~~lgi~~~ 385 (590)
T 3n05_A 307 EEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAE-LARRTGLNFR 385 (590)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCSSCCHHHHHHHHH-HHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCcccEEEEEECCCCCCHHHHHHHHH-HHHHcCCcEE
Confidence 445567777788887533 6899999999999999999999999 89999999999988889888887 8999999999
Q ss_pred EEECchHHHHhhcCCC-CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccc
Q 039743 284 CVDATDQFLSKLKGVI-DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKS 362 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~-~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt 362 (531)
++|+++.|...+..+. ++-....+..+.+..++..+|.+.| +..+.+| ++++.. .|+ .|
T Consensus 386 ~i~i~~~~~~~~~~l~~~~~~~~n~~ar~r~~~l~~~A~~~g------~~vl~TG-n~se~~-----~Gy--------~t 445 (590)
T 3n05_A 386 TVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEG------HIVLAPG-NKSELA-----VGY--------ST 445 (590)
T ss_dssp ECCSHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHT------CEEBCCC-CHHHHH-----HTC--------CC
T ss_pred EEEChHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHhcC------CEEEeCC-CHHHHh-----cCc--------hh
Confidence 9999877654443322 1111112222335557777888777 6777777 444432 122 22
Q ss_pred ccccCCCCcccccceecccccCCHHHHHHHHHHcC-----------CCccccccCCCCCCCccccccCCCCcchHHHHHh
Q 039743 363 HHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILN-----------VPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILR 431 (531)
Q Consensus 363 ~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lg-----------lp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~ 431 (531)
.++. ...++.||.+++|+|||++|+++| +|+++++++|+|+ | .+++.|++.| ..++
T Consensus 446 ~~gd-------~~~~~~Pl~~l~K~eVr~la~~lg~~~~~~~~~~~ip~~i~~k~ps~~--L---~p~q~de~~l-~~Y~ 512 (590)
T 3n05_A 446 LYGD-------SVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAE--L---RPGQVDTDSL-PDYP 512 (590)
T ss_dssp SSCT-------TSCSBCTTTTSCHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTCC----------------------CHH
T ss_pred hcCC-------CccceeecCCCcHHHHHHHHHHhCcccccccccccChHHHhCCCCCCC--C---CCCCcCcccc-CCHH
Confidence 2222 124789999999999999999999 8999999999887 2 5799999999 6899
Q ss_pred hhhHHHHHHH
Q 039743 432 QVDEIFIQSI 441 (531)
Q Consensus 432 ~~d~~~~~~l 441 (531)
..|.++...+
T Consensus 513 ~~D~~l~~~~ 522 (590)
T 3n05_A 513 VLDAILELYV 522 (590)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876543
|
| >3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=173.49 Aligned_cols=170 Identities=16% Similarity=0.137 Sum_probs=112.1
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHH---Hhh--cCC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFL---SKL--KGV 298 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~---~~l--~~~ 298 (531)
.++++|++|||+||+++++++++. |.+++++|+|+|+....|.+.+.+ +|+.+|+++++++.+.... +.+ ..+
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~-~~~v~~~~~~~~~~~~~e~~~a~~-~a~~lgi~~~~~~~~~~~~~~~~~l~~~~~ 80 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE-FEEVETVTFHYNQRHSQEVEVAKS-IAEKLGVKNHLLDMSLLNQLAPNALTRNDI 80 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-CSEEEEEEEESSCTTCHHHHHHHH-HHHTTCCCEEEEECGGGGGGSTGGGC----
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc-CCceEEEEEeCCCCCHHHHHHHHH-HHHHhCCCeEEEeChHHhhhcccccccccc
Confidence 468999999999999999999987 789999999999876667666665 8999999999999975210 001 011
Q ss_pred CCc-----ccccchhhHH-HH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCc
Q 039743 299 IDP-----ETKRKIIGKE-FI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 299 ~~p-----~~kr~~~~~~-~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
..| ...+++.++. ++ .++.+.|++.| +++|++||+.+|..+. +++ +...++...+......
T Consensus 81 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g------~~~i~tG~~~dd~~~~----~~~--~~~~~~~l~~~~~~~~ 148 (219)
T 3bl5_A 81 EIEVKDGELPSTFVPGRNLVFLSFASILAYQIG------ARHIITGVCETDFSGY----PDC--RDEFVKSCNVTVNLAM 148 (219)
T ss_dssp ----------CCCCTTHHHHHHHHHHHHHHHHT------CSEEECCCCC----CC----GGG--SHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCceeechHHHHHHHHHHHHHHcC------CCEEEEeccccccCCC----CCC--CHHHHHHHHHHHHhcc
Confidence 111 0112233343 44 56688888887 8999999999998652 110 0111221111100001
Q ss_pred ccccceecccccCCHHHHHHHHHHcCCCccccccCC
Q 039743 372 DMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHP 407 (531)
Q Consensus 372 ~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P 407 (531)
...+++++||.+++|+||+++++++|+|..++...|
T Consensus 149 ~~~~~ii~PL~~~~K~ei~~~a~~~glp~~~~~~t~ 184 (219)
T 3bl5_A 149 EKPFVIHTPLMWLNKAETWKLADELGALDFVKNNTL 184 (219)
T ss_dssp TSCCEEECTTTTCCHHHHHHHHHHTTCHHHHHHHCC
T ss_pred CCCeEEEeccccCCHHHHHHHHHHcCCCccchhhee
Confidence 135679999999999999999999999765455444
|
| >2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=182.27 Aligned_cols=172 Identities=22% Similarity=0.305 Sum_probs=122.3
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCC--------hhHHHHHHHHHHHhCCCcEEEEECchHHHHhh
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR--------YKERERVMDTFEKDLHLPVTCVDATDQFLSKL 295 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~--------~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l 295 (531)
.++|+||+|||+||+|+|+++++. |.+|+++|++++... ..+.+.+.+ +|+.+||+++++|+++.|.+.+
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~-va~~lGIp~~vv~~~~~~~~~v 86 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQ-GYDVIGIFMKNWDDTDENGVCTATEDYKDVVA-VADQIGIPYYSVNFEKEYWDRV 86 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCCCCC----CHHHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHT
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHc-CCcEEEEEEECCCcccccccCCCHHHHHHHHH-HHHHhCCcEEEEeChHHHHHHH
Confidence 468999999999999999999987 999999999998642 245555555 8999999999999987664321
Q ss_pred ---------cCCCCcccccchhhHHH--HHHHHHHHHHhhhhcCCCCcEEEecccCCCcc-ccCCC---CCCCCCccccc
Q 039743 296 ---------KGVIDPETKRKIIGKEF--ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI-ESCPP---PGTGRTHSHTI 360 (531)
Q Consensus 296 ---------~~~~~p~~kr~~~~~~~--~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~-es~~~---~g~g~~~~~~i 360 (531)
.+.+ |. .|+.|+.+ +..+.+.|+++| +++|++||+.+|.. ++... .+. +..
T Consensus 87 ~~~~l~~y~~G~t-pn--pc~~C~r~ik~~~l~~~A~~~G------~d~IatGH~a~d~~~~~~~~~l~rg~-----d~~ 152 (376)
T 2hma_A 87 FEYFLAEYRAGRT-PN--PDVMCNKEIKFKAFLDYAITLG------ADYVATGHYARVARDEDGTVHMLRGV-----DNG 152 (376)
T ss_dssp HHHHHHHHHTTCC-CC--HHHHHHHHTTTTHHHHHHHTTT------CSEEECCCSEEEEECSSSCEEEEECS-----STT
T ss_pred HHHHHHHHhcCCC-CC--hHHHHHHHHHHHHHHHHHHhCC------CCEEEECcchhhhhCCCchhhhhhcc-----ccc
Confidence 1221 21 24556553 457788888887 89999999999876 43210 111 011
Q ss_pred c-cccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCc
Q 039743 361 K-SHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGL 413 (531)
Q Consensus 361 k-t~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~l 413 (531)
+ .-+.+.+++.....++++||.+++|+|||++|+++|||. ..+.+..+.|+
T Consensus 153 kdqsyfL~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~--~~k~~s~~~cf 204 (376)
T 2hma_A 153 KDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLST--AKKKDSTGICF 204 (376)
T ss_dssp TCCGGGGTTCCHHHHTTEECTTTTCCHHHHHHHHHHTTCTT--TTCCCCCSCTT
T ss_pred cccchhccCCChhhcCcEEecCcCCCHHHHHHHHHHcCCCc--ccCCCCCCccc
Confidence 1 012344454433467999999999999999999999994 33334456665
|
| >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-19 Score=188.59 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=122.2
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHH---hCCcEEEEEEeCCCC-C--hhHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKA---IGDRLHCVFVDNGLL-R--YKERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~---~g~~v~~v~id~g~~-~--~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
+.+.++++||+|||+||+++++++++. .|.++.++|+|||+. . ..+.+.+.+ +|+.+|+++++++++...+..
T Consensus 15 ~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~-~~~~lgi~~~v~~~~~~~~~~ 93 (464)
T 3a2k_A 15 LSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKR-FCVERRILCETAQIDVPAFQR 93 (464)
T ss_dssp SSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHH-HHHHTTCEEEEEECCCHHHHT
T ss_pred CCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHH-HHHHcCCcEEEEEechhhhhh
Confidence 555789999999999999999999874 478999999999997 2 234444544 899999999999997422111
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCCCc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
-.+ .+++. .+...++..|.+.|++.| +++|++||+.+|.+|+.. ..|.| ..++.++++
T Consensus 94 ~~~-~~~e~---~aR~~Ry~~l~~~a~~~g------~~~IatgH~~dD~aEt~L~~l~rG~g---------~~gL~gm~~ 154 (464)
T 3a2k_A 94 SAG-LGAQE---AARICRYRFFAELMEKHQ------AGYVAVGHHGDDQVETILMRLVRGST---------SKGYAGIPV 154 (464)
T ss_dssp TTT-CCSHH---HHHHHHHHHHHHHHHTTT------CCEEECCCCHHHHHHHHHHHHHHCCC---------SSSTTCSCS
T ss_pred ccC-CCHHH---HHHHHHHHHHHHHHHHcC------cCEEEEeCChHHHHHHHHHHHHcCCC---------cccccCCCc
Confidence 111 23332 334557788999998887 899999999999998631 12221 123556655
Q ss_pred cc---ccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 372 DM---KLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 372 ~~---~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.. ...+++||.+++|+||+++++.+|+|. +..|++
T Consensus 155 ~~~~~~~~iiRPLl~~~k~eI~~ya~~~gl~~---~~d~sn 192 (464)
T 3a2k_A 155 KRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSP---RCDPSN 192 (464)
T ss_dssp EEECSSSEEECGGGGSCHHHHHHHHHHTCCSS---CSCTTC
T ss_pred cccCCCCEEECCCccCcHHHHHHHHHHcCCCe---EECCCC
Confidence 43 257999999999999999999999995 444544
|
| >2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=181.11 Aligned_cols=171 Identities=20% Similarity=0.262 Sum_probs=116.0
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCC--------hhHHHHHHHHHHHhCCCcEEEEECchHHHHh-
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR--------YKERERVMDTFEKDLHLPVTCVDATDQFLSK- 294 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~--------~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~- 294 (531)
.++|+||+|||+||+|+|+++++. |.+|+++|++++... ..+.+.+.+ +|+.|||+++++|+++.|.+.
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~-va~~LGIp~~vvd~~~~f~~~v 94 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQQ-GYQVEGLFMKNWEEDDGEEYCTAAADLADAQA-VCDKLGIELHTVNFAAEYWDNV 94 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHTT-CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHT
T ss_pred CCEEEEEEEChHHHHHHHHHHHHc-CCeEEEEEEEcCccccccCCCCCHHHHHHHHH-HHHHcCCcEEEEeCcHHHHHHH
Confidence 568999999999999999999987 999999999998653 234555555 899999999999998766432
Q ss_pred -------h-cCCCCcccccchhhHHH--HHHHHHHHHH-hhhhcCCCCcEEEecccCCCccccCC---CCCCCCCccccc
Q 039743 295 -------L-KGVIDPETKRKIIGKEF--ICIFDAFAHD-LEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTI 360 (531)
Q Consensus 295 -------l-~~~~~p~~kr~~~~~~~--~~~~~~~a~~-~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~i 360 (531)
. .+.+ | ..|+.|+.+ ++.+.+.|++ +| +++|++||+.+|..++.. ..+. +..
T Consensus 95 ~~~~~~ey~~G~t-p--npc~~Cnr~ik~~~l~~~A~~~~G------ad~IatGH~a~d~~~~~~~~l~rg~-----~~~ 160 (380)
T 2der_A 95 FELFLAEYKAGRT-P--NPDILCNKEIKFKAFLEFAAEDLG------ADYIATGHYVRRADVDGKSRLLRGL-----DSN 160 (380)
T ss_dssp HHHHHHHHHTTCC-C--CHHHHHHHHTTTTHHHHHHHHTTC------CSEEECCCSCEEEEETTEEEEECCS-----STT
T ss_pred HHHHHHHHHcCCC-C--ChhHHHHHHHHHHHHHHHHHhhcC------CCEEEEccccccccccchHHHhccc-----ccc
Confidence 1 2221 2 124566653 5678888887 77 899999999998765421 1111 011
Q ss_pred cc-ccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCC-CCCCCc
Q 039743 361 KS-HHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHP-FPGPGL 413 (531)
Q Consensus 361 kt-~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P-~~~p~l 413 (531)
+. -+.+.+++......+++||.+++|+||+++|+++|||. ...| ..+.|+
T Consensus 161 kdqsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~---~~kp~s~~~cf 212 (380)
T 2der_A 161 KDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVT---AKKKDSTGICF 212 (380)
T ss_dssp TCCGGGGSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC---------------
T ss_pred cccceeecCCChhhcceeEccCCCCCHHHHHHHHHHcCCCC---ccCCCCCCccc
Confidence 10 12244444333357999999999999999999999994 4444 446665
|
| >1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-19 Score=178.47 Aligned_cols=171 Identities=16% Similarity=0.185 Sum_probs=122.8
Q ss_pred hhhhhhhhhhcc--ccCccceeeccCCCCCHHHHHHHHHHH---hCCc-EEEEEEeCCCCC--hhHHHHHHHHHHHhCCC
Q 039743 209 VLDEEVKCIKDT--VGLEDHVICALSGGVDSTVAATLVHKA---IGDR-LHCVFVDNGLLR--YKERERVMDTFEKDLHL 280 (531)
Q Consensus 209 ~~~~~~~~i~~~--v~~~~kvvvalSGGvDS~v~a~l~~k~---~g~~-v~~v~id~g~~~--~~e~~~~~~~la~~lgi 280 (531)
+.++..+.++++ +.+.++++||+|||+||+++++++++. +|.+ +.++|+|+|+.. ..+.+.+.+ +|+.+|+
T Consensus 7 ~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~-~a~~lgi 85 (317)
T 1wy5_A 7 VIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKE-FAKERNM 85 (317)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHH-HHHHHTC
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHH-HHHHcCC
Confidence 344445555544 555789999999999999999999874 4778 999999999863 234444544 8999999
Q ss_pred cEEEEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCC---CCCCCCcc
Q 039743 281 PVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPP---PGTGRTHS 357 (531)
Q Consensus 281 ~~~vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~---~g~g~~~~ 357 (531)
++++++++........+ .+++. .+...++..|.+.|++.| +++|++||+.+|..|+... .|.|
T Consensus 86 ~~~v~~~~~~~~~~~~~-~~~e~---~ar~~Ry~~l~~~a~~~g------~~~i~~Gh~~dD~~Et~l~~l~rg~g---- 151 (317)
T 1wy5_A 86 KIFVGKEDVRAFAKENR-MSLEE---AGRFLRYKFLKEILESEG------FDCIATAHHLNDLLETSLLFFTRGTG---- 151 (317)
T ss_dssp CEEEEECCHHHHHHHTT-CCHHH---HHHHHHHHHHHHHHHHTT------CSEEECCCCHHHHHHHHHHHHHHCCC----
T ss_pred cEEEEEEechhhhccCC-CCHHH---HHHHHHHHHHHHHHHHcC------CCEEEEeCchhHHHHHHHHHHHhCCC----
Confidence 99999987432221112 23331 222446778888998887 8999999999999985211 1221
Q ss_pred cccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCc
Q 039743 358 HTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPE 400 (531)
Q Consensus 358 ~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~ 400 (531)
..++.++++. ...+++||.+++|+||+++++++|+|.
T Consensus 152 -----~~gl~~~~~~-~~~iirPLl~~~k~eI~~~~~~~gl~~ 188 (317)
T 1wy5_A 152 -----LDGLIGFLPK-EEVIRRPLYYVKRSEIEEYAKFKGLRW 188 (317)
T ss_dssp -----HHHHHCSCSE-ETTEECTTTTCCHHHHHHHHHHTTCCC
T ss_pred -----cccccCCCCC-CCeEECCCccCCHHHHHHHHHHcCCCe
Confidence 0124455442 347999999999999999999999995
|
| >3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-19 Score=170.65 Aligned_cols=146 Identities=19% Similarity=0.231 Sum_probs=106.4
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh-cCC---C
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL-KGV---I 299 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l-~~~---~ 299 (531)
.++++|++|||+||+++++++++. |.++.++|+|+|+.. +.+.+.+ +|+.+|+++++++++..|.... ... .
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~~-g~~v~~~~v~~~~~~--~~~~~~~-~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKKL-GYNPHLITINFGVIP--SYKLAEE-TAKILGFKHKVITLDRKIVEKAADMIIEHK 81 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHHT-TEEEEEEEEECSSSC--TTHHHHH-HHHHHTCEEEEEECCTHHHHHHHHHHHHHS
T ss_pred CCeEEEEEECcHHHHHHHHHHHHc-CCCeEEEEEeCCCch--HHHHHHH-HHHHhCCCEEEEECCHHHHHHHHHHHHhcC
Confidence 468999999999999999999875 899999999999876 5566665 8999999999999987654321 110 1
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 300 DPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 300 ~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
.|.. .|...++.++.+.|+ | +++|++||+.+|.+|+. .++ ++.+++....+.+++
T Consensus 82 ~~~~---~c~~~~~~~l~~~A~--g------~~~i~tGh~~dD~~et~--~~~------------gl~~~~~~~~~~iir 136 (203)
T 3k32_A 82 YPGP---AIQYVHKTVLEILAD--E------YSILADGTRRDDRVPKL--SYS------------EIQSLEMRKNIQYIT 136 (203)
T ss_dssp SSHH---HHHHHHHHHHHHHTT--T------CSEEECCCCTTCCSSCC--CHH------------HHHHHHHHHTCEEEC
T ss_pred CCcc---HHHHHHHHHHHHHhc--C------CCEEEECCCcccchhhc--chh------------hccCcccccCCeEEe
Confidence 1222 223334445555554 4 89999999999999852 112 111222223467999
Q ss_pred ccccCCHHHHHHHHHHcCCC
Q 039743 380 PLKLLFKDEVRQLGRILNVP 399 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp 399 (531)
||..++|+||+++|+++ ++
T Consensus 137 PLl~~~k~eI~~~a~~~-l~ 155 (203)
T 3k32_A 137 PLMGFGYKTLRHLASEF-FI 155 (203)
T ss_dssp GGGGCCHHHHHHHHHHH-EE
T ss_pred ccCCCCHHHHHHHHHHh-CC
Confidence 99999999999999998 76
|
| >2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-18 Score=164.13 Aligned_cols=161 Identities=17% Similarity=0.233 Sum_probs=109.6
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECc--hHHHHh-h--cC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDAT--DQFLSK-L--KG 297 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~--~~f~~~-l--~~ 297 (531)
.++++|++|||+||+++++++.+. +.+++++|+|+|+....|.+.+.+ +|+.+|++ +++++++ ..|... + ..
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~-~~~v~av~~~~g~~~~~e~~~a~~-~a~~lgi~~~~vi~~~~l~~~~~~~l~~~~ 79 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD-YDDVHCITFDYGQRHRAEIEVAQE-LSQKLGAAAHKVLDVGLLNELATSSLTRDS 79 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-CSEEEEEEEESSSSCHHHHHHHHH-HHHHHTCSEEEEEECTHHHHTSHHHHHHTT
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc-CCCEEEEEEECCCCCHHHHHHHHH-HHHHhCCCceEEEeChhHHHHhhhhccccc
Confidence 358999999999999999999987 789999999999876667666665 89999999 9999998 333211 1 01
Q ss_pred CC---------CcccccchhhHH-HHH-HHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCccccccccccc
Q 039743 298 VI---------DPETKRKIIGKE-FIC-IFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNV 366 (531)
Q Consensus 298 ~~---------~p~~kr~~~~~~-~~~-~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~ 366 (531)
+. ++.. .++.++. ++. +....|++.| ++.|++||+.+|..+... .++ .+...+....+.
T Consensus 80 ~~v~~~~~~~~~~~~-~~~~~R~~~~~~la~~~A~~~g------~~~I~~G~~~~D~~~~~~-~r~--~~~~~~~~~~~~ 149 (232)
T 2pg3_A 80 IPVPDYDANAQGIPN-TFVPGRNILFLTLASIYAYQVG------AEAVITGVCETDFSGYPD-CRD--EFVKALNQAIVL 149 (232)
T ss_dssp CCCCC---------C-CCCTTHHHHHHHHHHHHHHHHT------CSEEECCCCSCSSSCCGG-GSH--HHHHHHHHHHHH
T ss_pred ccccccccccCCCCC-CeEechHHHHHHHHHHHHHHcC------cCEEEEccCccccCCCCC-CCH--HHHHHHHHHHHH
Confidence 10 1111 2233333 333 3367788887 899999999999875210 011 000011111111
Q ss_pred CCCCcccccceecccccCCHHHHHHHHHHcCC-C
Q 039743 367 GGLPKDMKLKLIEPLKLLFKDEVRQLGRILNV-P 399 (531)
Q Consensus 367 ~~l~~~~~~~ii~PL~~l~K~eVr~la~~lgl-p 399 (531)
+ .....++++||.+++|.||+++++++|+ |
T Consensus 150 ~---~~~~~~i~~PL~~~~K~ei~~~a~~~gl~~ 180 (232)
T 2pg3_A 150 G---IARDIRFETPLMWLNKAETWALADYYQQLD 180 (232)
T ss_dssp H---HTSCCEEECTTTTCCHHHHHHHHHHTTCHH
T ss_pred h---CCCCeEEEEecCCCCHHHHHHHHHHcCCCc
Confidence 1 0124679999999999999999999999 6
|
| >1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-18 Score=179.64 Aligned_cols=164 Identities=18% Similarity=0.192 Sum_probs=119.1
Q ss_pred hhccccCccceeeccCCCCCHHHHHHHHHHH----hCCcEEEEEEeCCCCCh--hHHHHHHHHHHHhCCCcEEEEECchH
Q 039743 217 IKDTVGLEDHVICALSGGVDSTVAATLVHKA----IGDRLHCVFVDNGLLRY--KERERVMDTFEKDLHLPVTCVDATDQ 290 (531)
Q Consensus 217 i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~----~g~~v~~v~id~g~~~~--~e~~~~~~~la~~lgi~~~vvd~~~~ 290 (531)
+.+.+.+.++++||+|||+||+++++++++. .|.++.++|+|||+... .+.+.+.+ +|+.+|+++++++++..
T Consensus 6 l~~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~-~~~~lgi~~~v~~~~~~ 84 (433)
T 1ni5_A 6 LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCEN-VCQQWQVPLVVERVQLA 84 (433)
T ss_dssp HHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHH-HHHHTTCCEEEECCCCC
T ss_pred HHHhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHH-HHHHcCCcEEEEEecCC
Confidence 4455666789999999999999999999885 47899999999999743 23444444 89999999999988642
Q ss_pred HHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccC
Q 039743 291 FLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVG 367 (531)
Q Consensus 291 f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~ 367 (531)
..+ .+++. .+.+.++..|.+.|+ ++++|++||+.+|.+|+.. ..|.|. .++.
T Consensus 85 ----~~~-~~~e~---~aR~~Ry~~l~~~a~--------~~~~i~tgH~~dD~aEt~L~~l~RG~g~---------~gL~ 139 (433)
T 1ni5_A 85 ----QEG-LGIEA---QARQARYQAFARTLL--------PGEVLVTAQHLDDQCETFLLALKRGSGP---------AGLS 139 (433)
T ss_dssp ----CSS-STTTT---HHHHHHHHHHHHTCC--------TTEEEECCCCHHHHHHHHHHHHTTTCCT---------TGGG
T ss_pred ----CCC-CCHHH---HHHHHHHHHHHHHHh--------hCCeEEeeccchHHHHHHHHHHHcCCCc---------cccc
Confidence 111 23332 233445666665553 2789999999999998732 233321 2455
Q ss_pred CCCccc---ccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 368 GLPKDM---KLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 368 ~l~~~~---~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+|++.. ...+++||.+++|+||+++++.+|+|. +..|++
T Consensus 140 gm~~~~~~~~~~iiRPLl~~~k~eI~~y~~~~gl~~---~~D~sn 181 (433)
T 1ni5_A 140 AMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRW---IEDESN 181 (433)
T ss_dssp CCCSEEEETTEEEECGGGSCCHHHHHHHHHHTTCCC---BCCCCG
T ss_pred CCCCccccCCceEEccCccCCHHHHHHHHHHcCCCe---EECCCC
Confidence 666543 367999999999999999999999995 444543
|
| >1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=175.39 Aligned_cols=165 Identities=10% Similarity=0.052 Sum_probs=117.2
Q ss_pred ccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHh---
Q 039743 219 DTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSK--- 294 (531)
Q Consensus 219 ~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~--- 294 (531)
+.+.+.+||+||+|||+||+++++++++. |.+|+|+|+|+|+....|.+.+.+ +|+++|+ +++++|+++.|.+.
T Consensus 5 ~~l~~~~KVvVA~SGGlDSSvll~~L~e~-G~eViavtvd~Gq~~~~ele~a~~-~A~~lGi~~~~vvD~~eef~~~v~p 82 (455)
T 1k92_A 5 KHLPVGQRIGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEEDYDAIPR-RAMEYGAENARLIDCRKQLVAEGIA 82 (455)
T ss_dssp CSCCTTSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCCTTCSCTTHHHH-HHHHHTCSEEEEEECHHHHHHHHHH
T ss_pred hhhcCCCeEEEEEcChHHHHHHHHHHHHc-CCEEEEEEEEcCCCCHHHHHHHHH-HHHHhCCCeEEEEeChHHHHHHhHH
Confidence 34555789999999999999999999998 999999999999865556677766 8999999 89999998777533
Q ss_pred -hcCCCC--cccccchhhH------HHHHHHHHHHHHhhhhcCCCCcEEEecccC--CCccccCCCCCCCCCcccccccc
Q 039743 295 -LKGVID--PETKRKIIGK------EFICIFDAFAHDLEQKLGKKPAYLVQGTLY--PDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 295 -l~~~~~--p~~kr~~~~~------~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~--~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
+..-.. |+.+||+.+. .+++.+.++|++.| +++|++||+. +|... ..
T Consensus 83 ~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~G------ad~IAtGht~kgnDq~r----------------f~ 140 (455)
T 1k92_A 83 AIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDG------VNIWGDGSTYKGNDIER----------------FY 140 (455)
T ss_dssp HHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTT------CCEEECCCCTTSSHHHH----------------HH
T ss_pred HHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcC------CCEEEECCcCCCCCHHH----------------HH
Confidence 211111 1332333221 13467788888887 8999999974 33221 00
Q ss_pred cccCCCCcccccceeccccc-------CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKL-------LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~-------l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.....+. ..++++.|+++ ++|+||+++|+++|+|.......|++
T Consensus 141 ~~~~al~--p~l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~t~~~pyS 191 (455)
T 1k92_A 141 RYGLLTN--AELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYS 191 (455)
T ss_dssp HHHHHHC--TTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCCCCCCCSSE
T ss_pred HHHHhcC--CCCEEECeeccccccccCCCHHHHHHHHHHcCCCcccCCCCCCc
Confidence 0000111 14679999998 79999999999999997544455654
|
| >3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-18 Score=186.55 Aligned_cols=198 Identities=15% Similarity=0.052 Sum_probs=123.3
Q ss_pred hhhhhhhhccccC--ccceeeccCCCCCHHHHHHH-------HHHHhCCc------------------------------
Q 039743 211 DEEVKCIKDTVGL--EDHVICALSGGVDSTVAATL-------VHKAIGDR------------------------------ 251 (531)
Q Consensus 211 ~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l-------~~k~~g~~------------------------------ 251 (531)
......+++++.+ .++++|++|||+||+++|+| +.+++|.+
T Consensus 288 ~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (634)
T 3ilv_A 288 EATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKIT 367 (634)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccchhHhh
Confidence 4445566666543 46899999999999999998 45788965
Q ss_pred ---EEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCC-------CcccccchhhHH----HHHHHH
Q 039743 252 ---LHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVI-------DPETKRKIIGKE----FICIFD 317 (531)
Q Consensus 252 ---v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~-------~p~~kr~~~~~~----~~~~~~ 317 (531)
++|+++++...+..+.+++.+ +|+.||++++++|+++.|...++.+. +++......+|. +..+++
T Consensus 368 ~~~~~~v~m~~~~ss~~~~~dA~~-la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~R~~~l~ 446 (634)
T 3ilv_A 368 AVFLTTAYQSTRNSGDETYTSAKT-LAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQNIQARGRAPIIW 446 (634)
T ss_dssp HHHEEEEEEECTTCCSHHHHHHHH-HHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHTTHHHHH
T ss_pred hheeeeeecCCCCCCHHHHHHHHH-HHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccCcchhhhhhHHHHHHHHH
Confidence 889999977777777788776 89999999999999977654332211 222222233343 334667
Q ss_pred HHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHc-
Q 039743 318 AFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRIL- 396 (531)
Q Consensus 318 ~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~l- 396 (531)
.+|.+.| + ++.||. +..|. ..|+ .|.+++.. ..+.||.+++|+|||++|+++
T Consensus 447 ~~A~~~g------~--lvlgTg--nksE~--~~Gy--------~T~ygD~~-------~~~~Pl~~l~KteVr~la~~l~ 499 (634)
T 3ilv_A 447 MLTNVKQ------A--LLITTS--NRSEG--DVGY--------ATMDGDTA-------GGIAPIAGVDKDFIRSWLRWAE 499 (634)
T ss_dssp HHHHHHT------C--EEBCCC--CHHHH--HTTC--------SCTTTTTC-------SSBBTTTTSCHHHHHHHHHHHH
T ss_pred HHHHhcC------C--EEeccC--chhhH--hhCC--------ccccCCcc-------cCCcccCCCcHHHHHHHHHHHH
Confidence 7777766 4 555652 23332 1232 23333322 368999999999999999999
Q ss_pred ---CCC--ccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHH
Q 039743 397 ---NVP--EQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQ 439 (531)
Q Consensus 397 ---glp--~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~ 439 (531)
|+| +++++++|+|+ |..--.++.|++.| -.++..|.++..
T Consensus 500 ~~~glp~l~~i~~k~pSae--L~p~~~~q~de~~l-~~Y~~lD~~l~~ 544 (634)
T 3ilv_A 500 KNRNQHGLHIVNKLAPTAE--LRPSEYTQTDERDL-MPYDVLARIERK 544 (634)
T ss_dssp HHSCCGGGSSCC---------------------CC-CTTTHHHHHHHH
T ss_pred HcCCCchHHHHcCCCCCcC--cCcCCCCCCCcccc-CCHHHHHHHHHH
Confidence 999 89999988776 32100288888877 677777777543
|
| >1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-17 Score=156.04 Aligned_cols=160 Identities=12% Similarity=0.047 Sum_probs=112.5
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh--cC--C-C
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL--KG--V-I 299 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l--~~--~-~ 299 (531)
++++||+|||+||+|++++++++ +.++.++|+|+|+..++..+.+. .+|+++|+++++++.+..+.... .+ . .
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~-~~~v~~v~vd~g~~~~e~~~~v~-~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~ 122 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQI-RPDIPVILTDTGYLFPETYRFID-ELTDKLKLNLKVYRATESAAWQEARYGKLWEQ 122 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHH-STTCEEEEEECSCBCHHHHHHHH-HHHHHTTCEEEEEECSSCHHHHHHHHCCGGGS
T ss_pred CCEEEEecCCHHHHHHHHHHHHh-CCCCeEEEeeCCCCCHHHHHHHH-HHHHHhCCcEEEEeCCCCHHHHHHhcCCCCCC
Confidence 58999999999999999999998 78999999999998665555554 48999999999998864321111 12 0 0
Q ss_pred CcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccccccee
Q 039743 300 DPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLI 378 (531)
Q Consensus 300 ~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii 378 (531)
+|. .++.||..+ ...+.+.+++.+ ++.+++|++.+|..+ ++++ ..+. ...+..++
T Consensus 123 ~~~-~~~~~~~~~K~~~l~~~~~~~~------~~~i~~G~r~dd~~~-----r~~~---~~~~---------~~~~~~~i 178 (215)
T 1sur_A 123 GVE-GIEKYNDINKVEPMNRALKELN------AQTWFAGLRREQSGS-----RANL---PVLA---------IQRGVFKV 178 (215)
T ss_dssp HHH-HHHHHHHHHTHHHHHHHHHHTT------EEEEECCCCTTSSST-----TTTC---CSEE---------EETTEEEE
T ss_pred Ccc-HHHHHHHHHHHHHHHHHHHhcC------CceEEEEeehhhhhh-----hcCC---Cccc---------cCCCEEEE
Confidence 122 223444432 235566666665 688999999988433 2210 0111 11134589
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCCCC
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPFPG 410 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~ 410 (531)
+||.+++|+||++++++.|+|..-++++.|+.
T Consensus 179 ~PLl~~t~~dI~~y~~~~~lp~~~lY~~Gy~s 210 (215)
T 1sur_A 179 LPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLS 210 (215)
T ss_dssp CTTTTCCHHHHHHHHHHHTCCCCGGGGGTCSC
T ss_pred echHhCCHHHHHHHHHHhCCCCChHHhCCCCC
Confidence 99999999999999999999987777776664
|
| >3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-18 Score=190.32 Aligned_cols=196 Identities=16% Similarity=0.112 Sum_probs=125.7
Q ss_pred hhhhccccC--ccceeeccCCCCCHHHHHHHHHHHh---C---CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEE
Q 039743 215 KCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAI---G---DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286 (531)
Q Consensus 215 ~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~---g---~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd 286 (531)
..|++++.+ .++++|++|||+||+|++++++++. | .+++|+++++...++.+.+++.+ +|+.+|++++++|
T Consensus 350 ~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~~~~v~~v~m~~~~~~~~~~~~A~~-la~~lgi~~~~i~ 428 (680)
T 3sdb_A 350 SGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFATGEHTKNNAIK-LARALGVTFSEID 428 (680)
T ss_dssp HHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC--------CHHHH-HHHHHTCEEEECC
T ss_pred HHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCCCCceEEEEEECCCCCCHHHHHHHHH-HHHHcCCCEEEEE
Confidence 344554432 4689999999999999988888774 4 79999999987777777777776 8999999999999
Q ss_pred CchHHHHhhcCCCCc-----ccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcc
Q 039743 287 ATDQFLSKLKGVIDP-----ETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHS 357 (531)
Q Consensus 287 ~~~~f~~~l~~~~~p-----~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~ 357 (531)
+++.|...+..+.++ .......+|. +..+++.+|.+.| . ++.||. +..|. ..|.
T Consensus 429 i~~~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g------~--lvlgTg--n~sE~--~~Gy----- 491 (680)
T 3sdb_A 429 IGDTARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRG------G--IVLGTG--DLSEL--ALGW----- 491 (680)
T ss_dssp CHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHT------E--EEEECC--CHHHH--HHTC-----
T ss_pred CHHHHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcC------C--EEEeCC--cHHhH--hcCe-----
Confidence 998776555544332 1011122333 3345666776655 3 666663 22232 1122
Q ss_pred ccccccc-ccCCCCcccccceecccccCCHHHHHHHHHHc-----------CCCccccccCCCCCCCccccc----cCCC
Q 039743 358 HTIKSHH-NVGGLPKDMKLKLIEPLKLLFKDEVRQLGRIL-----------NVPEQFLKRHPFPGPGLAVRV----LGDV 421 (531)
Q Consensus 358 ~~ikt~~-~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~l-----------glp~~~~~~~P~~~p~la~r~----~g~v 421 (531)
.|.+ ++.. ..+.||.+++|+|||++++++ |+|++++.++|+|+ | +. +++.
T Consensus 492 ---~T~~~gD~~-------~~~~Pl~~l~K~eVr~lar~l~~~~~~~~~~~~ip~~i~~k~Ps~e--L--~p~~~~~~q~ 557 (680)
T 3sdb_A 492 ---STYGVGDQM-------SHYNVNAGVPKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITPE--L--IPTGEEELQS 557 (680)
T ss_dssp ---SCCSSSTTC-------CSEETTTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC-----------------
T ss_pred ---eeccCCCcc-------ccccccCCCcHHHHHHHHHHHHhhccccccccCchHHHhcCCCCcC--c--CCCCCCCCCC
Confidence 2333 3321 257999999999999999999 89999999999886 3 32 4889
Q ss_pred CcchHHHHHhhhhHHHHHHHHH
Q 039743 422 TEGNSLDILRQVDEIFIQSIKE 443 (531)
Q Consensus 422 t~~~l~~~~~~~d~~~~~~l~~ 443 (531)
|++.| -.++..|.+|...++.
T Consensus 558 de~~l-g~Y~~~D~~L~~~~~~ 578 (680)
T 3sdb_A 558 SEAKV-GPFALQDFSLFQVLRY 578 (680)
T ss_dssp CHHHH-CCHHHHHHHHHHHHHH
T ss_pred chhhc-CCHHHHHHHHHHHHHC
Confidence 99999 4999999998776653
|
| >1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=165.80 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=110.0
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHHh-----hcCC
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLSK-----LKGV 298 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~~-----l~~~ 298 (531)
+||+||+|||+||+|+++++++. |.+|+|+++|+|+. .|.+.+.+ +|+++|+ +++++|+++.|.+. +..-
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~-G~eViavt~d~Gq~--~Ele~A~~-vA~~lGi~~~~VvDl~eef~~~v~~p~i~~n 90 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEK-GFDVIAYVANVGQK--DDFVAIKE-KALKTGASKVYVEDLRREFVTDYIFTALLGN 90 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEESSCC--CCHHHHHH-HHHHHTCSEEEEEECHHHHHHHTHHHHHTTT
T ss_pred CCEEEEeCCcHHHHHHHHHHHHC-CCeEEEEEEEcCCH--HHHHHHHH-HHHHcCCceEEEEecHHHHHHhhhhHHHhcC
Confidence 58999999999999999999998 99999999999974 56777776 8999999 99999998877543 2221
Q ss_pred CCcccccchh----hHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc
Q 039743 299 IDPETKRKII----GKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM 373 (531)
Q Consensus 299 ~~p~~kr~~~----~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~ 373 (531)
... +.++.. ++. ....+.+.|+++| +++|++||+... .+..+.......+ ..
T Consensus 91 a~y-eg~Y~~g~~l~Rp~i~~~l~~~A~~~G------ad~IA~G~~~kg--------------nDq~rf~~~~~al--~p 147 (421)
T 1vl2_A 91 AMY-EGRYLLGTAIARPLIAKRQVEIAEKEG------AQYVAHGATGKG--------------NDQVRFELTYAAL--NP 147 (421)
T ss_dssp CCB-TTTBCCHHHHHHHHHHHHHHHHHHHHT------CSEEECCCCTTS--------------SHHHHHHHHHHHH--CT
T ss_pred Ccc-cCceeCCCcccHHHHHHHHHHHHHHcC------CCEEEECCeeCC--------------CChHHHHHHHHhc--CC
Confidence 111 222221 233 3456777888888 899999997531 0101100000011 11
Q ss_pred ccceeccccc-------CCHHHHHHHHHHcCCCccccccCCCC
Q 039743 374 KLKLIEPLKL-------LFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 374 ~~~ii~PL~~-------l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+.+++.||++ ++|+|||++|+++|+|.......|++
T Consensus 148 ~~~IiaPl~d~~~l~~~lsK~Eir~~A~e~Glp~~~t~~kp~S 190 (421)
T 1vl2_A 148 NLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKVSKKRPYS 190 (421)
T ss_dssp TSEEECGGGCHHHHHHTC--CHHHHHHHHHTCCCCSSCCCSSE
T ss_pred CCeEEcccCchhhccccCCHHHHHHHHHHcCCCcccCCCCCCc
Confidence 4679999999 79999999999999997433345544
|
| >1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=163.72 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=111.1
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCC-cEEEEECchHHHH-----hhcCC
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL-PVTCVDATDQFLS-----KLKGV 298 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi-~~~vvd~~~~f~~-----~l~~~ 298 (531)
+|+++|+|||+||+++++++++.+|.+++++|+|+|+ ..+.+.+.+ +|+++|+ +++++|+++.|.+ .+..-
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~g~~V~av~vd~g~--~~e~e~a~~-~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~~ 77 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQ--GEEVEEARE-KALRTGASKAIALDLKEEFVRDFVFPMMRAG 77 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHTCEEEEEEEESSC--SSCHHHHHH-HHHHHTCSEEEEEECHHHHHHHTHHHHHHTT
T ss_pred CcEEEEEeChHHHHHHHHHHHHhhCCcEEEEEEeCCC--HHHHHHHHH-HHHHhCCCeEEEEeCcHHHHHHhhHHHHHcC
Confidence 4799999999999999999999889999999999998 456666665 8999999 7999999866642 22221
Q ss_pred CCcccccch-----hhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCC--CccccCCCCCCCCCcccccccccccCCCCc
Q 039743 299 IDPETKRKI-----IGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYP--DVIESCPPPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 299 ~~p~~kr~~-----~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~--D~~es~~~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
..++ .++. +...++..+.+.|++.| ++++++||+.+ |..+. .. .+++ +.+
T Consensus 78 ~~~e-~~y~~g~~~~R~~~~~~L~~~A~~~G------~~~IatG~~~d~nDq~~f----~~------g~~~------l~p 134 (400)
T 1kor_A 78 AVYE-GYYLLGTSIARPLIAKHLVRIAEEEG------AEAIAHGATGKGNDQVRF----EL------TAYA------LKP 134 (400)
T ss_dssp CCBT-TTBCCTTTTHHHHHHHHHHHHHHHHT------CSEEECCCCTTSSHHHHH----HH------HHHH------HCT
T ss_pred Cccc-cccccCCccchHHHHHHHHHHHHHcC------CCEEEECCCCCcccHHHH----HH------HHHh------cCC
Confidence 1122 1222 22234567888888888 89999999986 65541 11 0111 111
Q ss_pred ccccceecccccC---CHHHHHHHHHHcCCCccccccCC
Q 039743 372 DMKLKLIEPLKLL---FKDEVRQLGRILNVPEQFLKRHP 407 (531)
Q Consensus 372 ~~~~~ii~PL~~l---~K~eVr~la~~lglp~~~~~~~P 407 (531)
.+++++||.++ +|+||+++++++|+|.......|
T Consensus 135 --~l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~~~~~p 171 (400)
T 1kor_A 135 --DIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKP 171 (400)
T ss_dssp --TCEEECGGGTCCCCSHHHHHHHHHHTTCCCC-----C
T ss_pred --CCEEEEeecccccCCHHHHHHHHHHcCCCcccCCCCC
Confidence 35799999998 99999999999999964333334
|
| >2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=159.53 Aligned_cols=148 Identities=16% Similarity=0.243 Sum_probs=107.6
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCc-EEEEECchHHHHhh-----cC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLP-VTCVDATDQFLSKL-----KG 297 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~-~~vvd~~~~f~~~l-----~~ 297 (531)
.++|++|+|||+||+++++++++. |.+|+++|+|+|+. .+.+.+.+ +|+++|++ ++++|+++.|...+ ..
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~-G~eV~av~vd~g~~--~e~e~a~~-~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~ 80 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ-GYDVIAYLANIGQK--EDFEEARK-KALKLGAKKVFIEDVSREFVEEFIWPAIQS 80 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT-TEEEEEEEEESSCC--CCHHHHHH-HHHHHTCSEEEEEECHHHHHHHTHHHHHHT
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc-CCEEEEEEEECCcH--HHHHHHHH-HHHHhCCCEEEEEeChHHHHHHHHHHHHHh
Confidence 468999999999999999999987 99999999999985 45666665 89999998 99999987665432 11
Q ss_pred CCCcccccchhhHH-----HHHHHHHHHHHhhhhcCCCCcEEEecccC--CCccccCCCCCCCCCcccccccccccCCCC
Q 039743 298 VIDPETKRKIIGKE-----FICIFDAFAHDLEQKLGKKPAYLVQGTLY--PDVIESCPPPGTGRTHSHTIKSHHNVGGLP 370 (531)
Q Consensus 298 ~~~p~~kr~~~~~~-----~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~--~D~~es~~~~g~g~~~~~~ikt~~~~~~l~ 370 (531)
-..+ +.++.++.. +++.+.+.|++.| +++|++||+. +|..+. .-+..++.
T Consensus 81 ~a~~-e~~y~~g~~~aRp~i~~~l~~~A~~~G------a~~IatGh~~~~nDq~rf----------------~lg~~~l~ 137 (413)
T 2nz2_A 81 SALY-EDRYLLGTSLARPCIARKQVEIAQREG------AKYVSHGATGKGNDQVRF----------------ELSCYSLA 137 (413)
T ss_dssp TCCB-TTTBCCTTTTHHHHHHHHHHHHHHHHT------CSEEECCCCTTSSHHHHH----------------HHHHHHHC
T ss_pred Cccc-ccccccccccchHHHHHHHHHHHHHcC------CCEEEECCcCcccchHHH----------------HHHHHhcC
Confidence 1111 123334332 3567788888888 8999999987 444321 00011111
Q ss_pred cccccceecccc------cC-CHHHHHHHHHHcCCCc
Q 039743 371 KDMKLKLIEPLK------LL-FKDEVRQLGRILNVPE 400 (531)
Q Consensus 371 ~~~~~~ii~PL~------~l-~K~eVr~la~~lglp~ 400 (531)
. .+++++||+ ++ +|+||+++|+++|+|.
T Consensus 138 p--~l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~ 172 (413)
T 2nz2_A 138 P--QIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPI 172 (413)
T ss_dssp T--TCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCC
T ss_pred C--CCceeccccchhhhccCCCHHHHHHHHHHcCCCe
Confidence 1 357999999 78 9999999999999996
|
| >2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=142.83 Aligned_cols=159 Identities=12% Similarity=0.047 Sum_probs=110.2
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHH--hhcCC---C
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLS--KLKGV---I 299 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~--~l~~~---~ 299 (531)
++++|++|||+||+|+++++.+. +.++.++|+|+|...++..+.+. .+|+++|++++++..+..+.. ...+. .
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~-~~~v~vv~idtg~~~~et~~~~~-~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~ 123 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQI-RPDIPVILTDTGYLFPETYRFID-ELTDKLKLNLKVYRATESAAWQEARYGKLWEQ 123 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHH-STTCEEEECCCSCBCHHHHHHHH-HHHHHTTCEEEECCCSSCHHHHHHHTCCGGGS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHh-CCCCeEEEecCCCCCHHHHHHHH-HHHHHhCCceEEEcCCCCHHHHHHHcCCcccc
Confidence 58999999999999999999998 67899999999998765555554 489999999999977632211 11120 0
Q ss_pred CcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccccccee
Q 039743 300 DPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLI 378 (531)
Q Consensus 300 ~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii 378 (531)
+|+ .++.||..+ ..-+.+.+++.+ ++.+++|++.+|..++ .+ ...+. ...+...+
T Consensus 124 ~~~-~~~~cc~~~K~~pl~~~l~~~~------~~~~~tG~r~dds~~R-----~~---l~~~~---------~~~~~~~i 179 (252)
T 2o8v_A 124 GVE-GIEKYNDINKVEPMNRALKELN------AQTWFAGLRREQSGSR-----AN---LPVLA---------IQRGVFKV 179 (252)
T ss_dssp HHH-HHHHHHHHHTHHHHHHHHHHTT------CSEEEECCCSTTTTCC-----TT---SCSEE---------ESSSSEEE
T ss_pred CCc-hHHHHHHHHHHHHHHHHHHhcC------CcEEEEeccccccccc-----cc---Cceee---------cCCCeEEE
Confidence 122 123344332 234555666665 6889999999885432 21 00111 11134589
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+||.+++|+||++++++.|||..-++.+=|+
T Consensus 180 ~PL~~wt~~dV~~y~~~~~lp~~~Ly~~Gy~ 210 (252)
T 2o8v_A 180 LPIIDWDNRTIYQYLQKHGLKYHPLWDEGYL 210 (252)
T ss_dssp CGGGSCCHHHHHHHHHHTTCCCCTTTTTTCS
T ss_pred echhhCCHHHHHHHHHHcCCCCChHHhCCCC
Confidence 9999999999999999999998766666554
|
| >4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-15 Score=161.95 Aligned_cols=194 Identities=21% Similarity=0.207 Sum_probs=129.4
Q ss_pred hhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhC-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECc
Q 039743 212 EEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIG-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDAT 288 (531)
Q Consensus 212 ~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~ 288 (531)
.+.-.+++++.+ .+++++++|||+||+++|+++.+++| .+|++++|+....+....+++.+ +|+.+|+.+..++++
T Consensus 286 a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~~~v~~v~mp~~~ts~~t~~~a~~-la~~lg~~~~~i~i~ 364 (565)
T 4f4h_A 286 ALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGAERVRAVMMPSRYTAGISTTDAAD-MARRVGVRYDEIAIA 364 (565)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCTTCCHHHHHHHHH-HHHHHTCEEEECCCH
T ss_pred HHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCCccEEEEeccccccccchHHHHHH-HHHHhCCceeeeecc
Confidence 334456666543 36899999999999999999999998 89999999988887777777776 899999999999998
Q ss_pred hHHH---HhhcCCCC--cc--cccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccc
Q 039743 289 DQFL---SKLKGVID--PE--TKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIK 361 (531)
Q Consensus 289 ~~f~---~~l~~~~~--p~--~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ik 361 (531)
+.+. ..+..... ++ ....+-.+.+..+++.+|.+.| .|+.||. |..|. ..|+ .
T Consensus 365 ~~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g--------~lvlgTg--n~sE~--a~Gy--------~ 424 (565)
T 4f4h_A 365 PMFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFG--------SIVLTTG--NKSEM--AVGY--------C 424 (565)
T ss_dssp HHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHC--------CEEEECC--CHHHH--HHTC--------S
T ss_pred hHHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcC--------CcccCCC--chhhH--hhcc--------c
Confidence 6542 33322111 11 1112333344457777777765 4777774 44442 1233 5
Q ss_pred cccccCCCCcccccceecccccCCHHHHHHHHHHcC----------CCccccccCCCCCCCccccccCCCCcchHHHHHh
Q 039743 362 SHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILN----------VPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILR 431 (531)
Q Consensus 362 t~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lg----------lp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~ 431 (531)
|++++++- .+.|+.+++|.+|+++++.++ +|+.++.+.|+++ | .+++.|++.| -.++
T Consensus 425 T~~Gd~~~-------~~~pi~~l~Kt~v~~l~~~~~~~~~~~~~~~ip~~i~~~~psae--L---~~~Q~ded~l-~~Y~ 491 (565)
T 4f4h_A 425 TLYGDMAG-------GFAVIKDIAKTLVYRLCRYRNAAAEYGQPDIVPERILTRAPSAE--L---RENQTDQDSL-PPYD 491 (565)
T ss_dssp CTTTTTCS-------SEETTTTCCHHHHHHHHHHHHHTCCTTCCCSSCHHHHHC--------------------C-CCHH
T ss_pred cccCCccc-------CchhccCccHHHHHHHHHHHhhhccccCcccChHHHcCCCCCcC--c---CCCCCCcccC-CCHH
Confidence 66776555 789999999999999999988 8988888878765 3 3689999888 4788
Q ss_pred hhhHHHHH
Q 039743 432 QVDEIFIQ 439 (531)
Q Consensus 432 ~~d~~~~~ 439 (531)
..|.++..
T Consensus 492 ~lD~~l~~ 499 (565)
T 4f4h_A 492 VLDAIMRM 499 (565)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877644
|
| >1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=144.59 Aligned_cols=177 Identities=12% Similarity=-0.002 Sum_probs=112.5
Q ss_pred hhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHh---CCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEE
Q 039743 210 LDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAI---GDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286 (531)
Q Consensus 210 ~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~---g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd 286 (531)
..+.++.|++.+...++++|++|||+||+|+++++.+++ +.++.++|+|+|+..++..+.+. .+|+++|++++++.
T Consensus 32 e~~a~~ilr~~~~~~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~et~~~v~-~~~~~~gi~l~v~~ 110 (325)
T 1zun_A 32 EAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRD-QMVEEMGLDLITHI 110 (325)
T ss_dssp HHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHHHHHHH-HHHHTTTCCEEEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHHHHHHHH-HHHHHcCCCEEEEe
Confidence 344556666666556789999999999999999999986 35789999999998765555554 48999999999998
Q ss_pred CchHHHHhhcCCCCcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccc
Q 039743 287 ATDQFLSKLKGVIDPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHN 365 (531)
Q Consensus 287 ~~~~f~~~l~~~~~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~ 365 (531)
.+..+. .+.......++.||..+ ...+.+.+++.| ++.+++|++.+|...+.. . ..+...-.
T Consensus 111 ~~~~~~---~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g------~~~i~tG~R~Des~~Ra~-~-------~~~~~r~~ 173 (325)
T 1zun_A 111 NPDGVA---QGINPFTHGSAKHTDIMKTEGLKQALDKHG------FDAAFGGARRDEEKSRAK-E-------RVYSFRDS 173 (325)
T ss_dssp C-----------------CCHHHHHHTHHHHHHHHHHHT------CSEEECCCCTTSSGGGGG-C-------CSEEEECT
T ss_pred CchHHh---cCCCccccChHHHHHHHHHHHHHHHHHHcC------CCEEEEecccchhhhhhc-c-------cceecccc
Confidence 764321 12211111222344332 235666666666 789999999987543211 0 00100000
Q ss_pred cCCCCcc---------------c-ccceecccccCCHHHHHHHHHHcCCCccccc
Q 039743 366 VGGLPKD---------------M-KLKLIEPLKLLFKDEVRQLGRILNVPEQFLK 404 (531)
Q Consensus 366 ~~~l~~~---------------~-~~~ii~PL~~l~K~eVr~la~~lglp~~~~~ 404 (531)
.++.... . ....++||.+++++||.+|++..|||..-++
T Consensus 174 ~~~~d~~~~rp~l~~~~n~~~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp~~~LY 228 (325)
T 1zun_A 174 KHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLY 228 (325)
T ss_dssp TCCBCGGGCCCCCSSCCCCCCCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCSCC
T ss_pred ccccCccccCcchhhhccccccCCCeEEEEchhhCCHHHHHHHHHHhCCCcchhh
Confidence 0011100 0 1335899999999999999999999975554
|
| >3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-14 Score=163.49 Aligned_cols=174 Identities=18% Similarity=0.185 Sum_probs=116.6
Q ss_pred CEEEEEeCCCCc-HHHHHHHHHHCCCEEEEEeCCC---ChhccccCCCCEEEEcCCCCCCCCCCCC--C-----Ch---H
Q 039743 6 ELVLILDYGSQY-THLITRRIRSLSILSLCLSGTC---SLDDITAKNPRVVILSGGPHSVHSPDAP--A-----FP---A 71 (531)
Q Consensus 6 ~~I~IlD~G~~~-~~~i~r~l~~~G~~~~v~~~~~---~~~~~~~~~~dgiIlsGGp~s~~~~~~~--~-----~~---~ 71 (531)
++|+||||++++ ...++++++.+|+.+++++.+. ..+. ..++|+||||||.+.-.....- + .. .
T Consensus 1048 pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~--l~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~ 1125 (1303)
T 3ugj_A 1048 PKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIG--LGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVR 1125 (1303)
T ss_dssp CEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCC--GGGCSEEEECCSCGGGGTTSTTHHHHHHHHTSHHHH
T ss_pred CEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCccc--HhhCCEEEECCCCcchhhhccchhHHHHHHhchhHH
Confidence 689999996666 5889999999999999886421 1122 3568999999997621111100 0 11 1
Q ss_pred HHHHH-HHhCCCcEEEeeHHHHHHHHH---cCCE-----EeecCcccc--eeeeEEEec-CCccccCCCCCceEEEEeec
Q 039743 72 GFLEW-ALSNGVYVLGICYGLQLMVQK---LDGV-----VKVGEKQEY--GRMEILVER-SSGIFGNKKVGHHQVVWMSH 139 (531)
Q Consensus 72 ~l~~~-~~~~~iPvLGIC~G~Qlla~~---~GG~-----v~~~~~~e~--G~~~v~~~~-~~~l~~~~~~~~~~~v~~~H 139 (531)
+.++. +.++++|+||||+|||+|+++ +.|. +.++....| -|..+++.. .+++++++. ...+.+|.+|
T Consensus 1126 ~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~~~~v~~~~s~~~~~~~-g~~~~i~vaH 1204 (1303)
T 3ugj_A 1126 DEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMV-GSQMPIAVSH 1204 (1303)
T ss_dssp HHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECCCSCGGGTTCT-TCEEEEEEEE
T ss_pred HHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCeEEEECCCCChhhhccC-CCEEeeeeEe
Confidence 23333 345799999999999999985 3454 666654444 355555553 468899886 3458899999
Q ss_pred cCccccCCC----------CcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCC
Q 039743 140 GDEAVVLPD----------GFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 140 ~~~v~~lp~----------g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
++.-...++ |..++-. ++++ .|++|.+++++++|++.|||+..
T Consensus 1205 gEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~yp~NPNGS~~~IaGi~s~~Grvlg~MpHPEr~~ 1273 (1303)
T 3ugj_A 1205 GEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPERVF 1273 (1303)
T ss_dssp SSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSSEEEESSBGGGSS
T ss_pred CCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCCCCCCCCChhhceEeECCCCCEEEEcCChHHcc
Confidence 866432221 2222222 2333 49999999999999999999864
|
| >2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.3e-14 Score=137.33 Aligned_cols=162 Identities=15% Similarity=0.028 Sum_probs=108.5
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhC--CcEEEEEEeCCCCChhHHHHHHHHHHHhCCC----cEEEEECch-----HHHH
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIG--DRLHCVFVDNGLLRYKERERVMDTFEKDLHL----PVTCVDATD-----QFLS 293 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g--~~v~~v~id~g~~~~~e~~~~~~~la~~lgi----~~~vvd~~~-----~f~~ 293 (531)
++++|++|||+||+|+++++.++.+ .++.++|+|+|...++..+.+. .+|+++|+ +++++..+. .+..
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~~~~i~vv~iDtg~~~~et~~~v~-~~~~~~gl~~~~~l~v~~~~~~~~~~~~~~ 120 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKN-EIEKKYYQPKNQTIHVYKPDGCESEADFAS 120 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCBCHHHHHHHH-HHHHHHTGGGTCCCEEECSTTCSSHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCccCCCeeEEEecCCCCCHHHHHHHH-HHHHHhCCCCCCCeEEEecCCccCHHHHHH
Confidence 5899999999999999999999855 4899999999998776555554 48999999 999987652 2221
Q ss_pred hhcCCCCcccccchhhHHH-HHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcc
Q 039743 294 KLKGVIDPETKRKIIGKEF-ICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKD 372 (531)
Q Consensus 294 ~l~~~~~p~~kr~~~~~~~-~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~ 372 (531)
..|..-++..+..||..+ ..-+.+.+++.| .+.+++|++.+|... +.+ ...+.. ...
T Consensus 121 -~~G~~~~~~~~~~cc~~~K~~pl~~~l~~~g------~~~~~tG~R~dds~~-----R~~---~~~~~~-------~~~ 178 (261)
T 2oq2_A 121 -KYGDFLWEKDDDKYDYLAKVEPAHRAYKELH------ISAVFTGRRKSQGSA-----RSQ---LSIIEI-------DEL 178 (261)
T ss_dssp -HHCTTHHHHCHHHHHHHHTHHHHHHHHHHTT------CSEEECCCCGGGCGG-----GGG---CCSEEE-------ETT
T ss_pred -HhCCCccccChHHHHHHHhHHHHHHHHHHcC------CCEEEEeccccchHH-----Hcc---CCceee-------cCC
Confidence 112211111112233221 234566666666 789999999888532 110 000000 000
Q ss_pred cccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 373 MKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 373 ~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.+...++||.+++++||.+|.+..|||..-++.+=|+
T Consensus 179 ~~~~ki~PL~~wt~~dV~~Yi~~~~lp~~pLy~~Gy~ 215 (261)
T 2oq2_A 179 NGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYR 215 (261)
T ss_dssp TTEEEECTTTTCCHHHHHHHHHHHTCCCCGGGGGTCS
T ss_pred CCeEEEechHhCCHHHHHHHHHHcCCCCCchhhCCCC
Confidence 1234699999999999999999999998666666554
|
| >1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-14 Score=145.92 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=91.5
Q ss_pred cCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhC-------CCcEEEEE-CchHHHH
Q 039743 222 GLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDL-------HLPVTCVD-ATDQFLS 293 (531)
Q Consensus 222 ~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~l-------gi~~~vvd-~~~~f~~ 293 (531)
+..+|+++++|| +||+|+++++.+. |.+++++|++++. ...+.+.+ +|+.| ++++++++ +++.+
T Consensus 177 g~~~kvlvllSG-vDS~vaa~ll~~~-G~~v~~v~~~~~~---~~~~~a~~-~a~~l~~~~~~~~i~~~vv~~~~~~~-- 248 (307)
T 1vbk_A 177 GTEGRMIGILHD-ELSALAIFLMMKR-GVEVIPVYIGKDD---KNLEKVRS-LWNLLKRYSYGSKGFLVVAESFDRVL-- 248 (307)
T ss_dssp TTTCEEEEECSS-HHHHHHHHHHHHB-TCEEEEEEESCSS---HHHHHHHH-HHHHHHTTCTTSCCCCEEESSHHHHH--
T ss_pred CCCCcEEEEEeC-CcHHHHHHHHHhC-CCeEEEEEEEECH---HHHHHHHH-HHHHHhhhccCCCCcEEEeCCCHHHH--
Confidence 345699999999 9999999999997 9999999999543 33444444 67766 78888887 54322
Q ss_pred hhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccc
Q 039743 294 KLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDM 373 (531)
Q Consensus 294 ~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~ 373 (531)
++|+++| +++|++||+..|... +++. +..+....
T Consensus 249 ------------------------~~A~~~g------a~~I~tG~~~~~~~~------------qt~~----l~~~~~~~ 282 (307)
T 1vbk_A 249 ------------------------KLIRDFG------VKGVIKGLRPNDLNS------------EVSE----ITEDFKMF 282 (307)
T ss_dssp ------------------------HHHHHHT------CCEEECCCCGGGCCT------------TCHH----HHHHHHHC
T ss_pred ------------------------HHHHHcC------CCEEEECcccchhcc------------ccHH----HhhhccCc
Confidence 6677777 899999998877531 1111 11122223
Q ss_pred ccceecccccCCHHHHHHHHHHcCC
Q 039743 374 KLKLIEPLKLLFKDEVRQLGRILNV 398 (531)
Q Consensus 374 ~~~ii~PL~~l~K~eVr~la~~lgl 398 (531)
...+++||.+++|+||+++|+++|+
T Consensus 283 ~~~vl~PL~~~~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 283 PVPVYYPLIALPEEYIKSVKERLGL 307 (307)
T ss_dssp SSCEECHHHHSCHHHHHHHHHHHTC
T ss_pred CCeEEEccCCCCHHHHHHHHHHcCC
Confidence 4579999999999999999999986
|
| >2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.31 E-value=7e-12 Score=124.46 Aligned_cols=165 Identities=12% Similarity=0.124 Sum_probs=105.9
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH-HHHhh--cCCCC-
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ-FLSKL--KGVID- 300 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~-f~~~l--~~~~~- 300 (531)
++++|++| |+||+|+++++.++ +.++.++|+|+|...++..+.+.+ +|+++|++++++..+.. +.... .+...
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~-~~~i~vv~iDtg~~~~et~~~v~~-~~~~~gi~l~v~~~~~~~~~~~~~~~g~~~~ 131 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL-NRNVKVFSLDTGRLHPETYRFIDQ-VREHYGIAIDVLSPDPRLLEPLVKEKGLFSF 131 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH-CTTCCEEEECCSCCCHHHHHHHHH-HHHHHTCCCEEECCCHHHHHHHHHHHCSCHH
T ss_pred CCEEEEee-cHHHHHHHHHHHHh-CCCceEEEEeCCCCCHHHHHHHHH-HHHHHCCeEEEEeCCccCHHHHHHHhCCCCc
Confidence 68999999 99999999999997 888999999999987665555554 89999999999877632 11111 12210
Q ss_pred cccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceec
Q 039743 301 PETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIE 379 (531)
Q Consensus 301 p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~ 379 (531)
.+..++.||..+. +-+.+..+ + .+.+++|+..+|..++ +++ ...+....+.. . ...+...++
T Consensus 132 ~~~~~~~cc~~~K~~pl~r~l~--~------~~~~itG~r~dds~~~----R~~---~~~~~~d~~~~-~-~~~g~~~i~ 194 (275)
T 2goy_A 132 YRDGHGECCGIRKIEPLKRKLA--G------VRAWATGQRRDQSPGT----RSQ---VAVLEIDGAFS-T-PEKPLYKFN 194 (275)
T ss_dssp HHHCTHHHHHHHTHHHHHHHHH--T------CSEEECCCCGGGTTSC----SCC---CCSEEECTTTC-C-SSSCCEEEC
T ss_pred cccCHHHHHHHHHHHHHHHHHH--h------cCchhcCchhhhhhhh----hhh---Ccccccccccc-c-CCCCeEEEe
Confidence 0111223443322 22333322 2 5689999988875221 110 00111000000 0 012345899
Q ss_pred ccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 380 PLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 380 PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
||.+++++||.+|+++.|||..-++.+=|+
T Consensus 195 PL~~wt~~dV~~Yi~~~~lp~~~Ly~~Gy~ 224 (275)
T 2goy_A 195 PLSSMTSEEVWGYIRMLELPYNSLHERGYI 224 (275)
T ss_dssp TTTTCCHHHHHHHHHHTTCCCCGGGGGTCS
T ss_pred chHhCCHHHHHHHHHHhCCCCChHHHcCCC
Confidence 999999999999999999998777776555
|
| >2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=117.05 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=100.7
Q ss_pred cceeeccCCCCCHHHHHHHHHHHh---------------------CCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 225 DHVICALSGGVDSTVAATLVHKAI---------------------GDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~---------------------g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
++++|++|||+||+|+++|+.+++ +.++.++|+|+|...++..+.+.+ +++++|++++
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~-~~~~ygl~l~ 132 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLE-TSERYCLSLY 132 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHH-HHHHTTEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHH-HHHHcCCCEE
Confidence 589999999999999999999874 357899999999987766655554 8999999998
Q ss_pred EEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
++..+..+ ...+.+.+.+.++... ....+++|+..+|-... .- .....+
T Consensus 133 v~~~~~~~-----------------~~~l~~~~~~~~k~~p-----~~~aii~G~Rrdds~~r----~l----~~~~~~- 181 (306)
T 2wsi_A 133 ESQRQSGA-----------------SVNMADAFRDFIKIYP-----ETEAIVIGIRHTDPFGE----AL----KPIQRT- 181 (306)
T ss_dssp ECCC----------------------CCHHHHHHHHHHHCT-----TCCEEECCCCCCSSSCC----CC----CSEEEC-
T ss_pred EEeCCccc-----------------cccHHHHHHHHHhhCC-----CCcEEEEEEeccccccc----cc----Cceecc-
Confidence 87654211 0122233334444321 26789999999985321 00 000001
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
..+.+ .+-.+.||.++++.||..+.+..|||..-++.+=|+
T Consensus 182 --d~~~p---~~~ri~PL~dWt~~DVw~Yi~~~~lpy~pLYd~GY~ 222 (306)
T 2wsi_A 182 --DSNWP---DFMRLQPLLHWDLTNIWSFLLYSNEPICGLYGKGFT 222 (306)
T ss_dssp --CTTSC---SCEEECTTTTCCHHHHHHHHHHHCCCBCHHHHTTCS
T ss_pred --CCCCC---CcEEEeChHHCCHHHHHHHHHHcCCCCChhHhcCCC
Confidence 11111 234589999999999999999999998666666554
|
| >3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=91.01 Aligned_cols=155 Identities=17% Similarity=0.074 Sum_probs=93.3
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCC------ChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCC
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLL------RYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGV 298 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~------~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~ 298 (531)
.|+++++|||+||+++++++.+. |.+|.++++..+.. ...+.+.+.+ .|+.+|||+++++++..
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~~-G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~-~A~~LGIpl~~v~~~g~-------- 74 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIKN-RFSVKFLVTMVSENEESYMYHTINANLTDL-QARALGIPLVKGFTQGE-------- 74 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEEECC--------CCSSSHHHH-HHHHHTCCEEEEEC-----------
T ss_pred CEEEEEecCcHHHHHHHHHHHHc-CCeEEEEEEEcCCCCCccccCCccHHHHHH-HHHHcCCCEEEEECCCC--------
Confidence 47999999999999999999887 99999998766542 1122334444 79999999999998631
Q ss_pred CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccccccee
Q 039743 299 IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLI 378 (531)
Q Consensus 299 ~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii 378 (531)
.+. . .+-+.+..++++ .+.++.|.+..+-.-+ +. - .+....+++.+
T Consensus 75 --~~~-------e-~e~l~~~l~~~~------i~~vv~Gdi~s~yqr~--------------r~-e---~vc~~~gl~~~ 120 (237)
T 3rjz_A 75 --KEK-------E-VEDLKRVLSGLK------IQGIVAGALASKYQRK--------------RI-E---KVAKELGLEVY 120 (237)
T ss_dssp ------------C-HHHHHHHHTTSC------CSEEECC---CCSHHH--------------HH-H---HHHHHTTCEEE
T ss_pred --chH-------H-HHHHHHHHHhcC------CcEEEECCcchHHHHH--------------HH-H---HHHHHcCCEEE
Confidence 110 0 011222223334 7889988876432100 00 0 01122356789
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCC-CcchH
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDV-TEGNS 426 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~v-t~~~l 426 (531)
.||=.....++-+-.-..|+..-++.-. ..+|--.++|.. +++-+
T Consensus 121 ~PLW~~d~~~Ll~e~i~~G~~aiiv~v~---~~gL~~~~lG~~l~~~~~ 166 (237)
T 3rjz_A 121 TPAWGRDAKEYMRELLNLGFKIMVVGVS---AYGLDESWLGRILDESAL 166 (237)
T ss_dssp CSSSSCCHHHHHHHHHHTTCEEEEEEEE---STTCCGGGTTCBCCHHHH
T ss_pred ccccCCCHHHHHHHHHHCCCEEEEEEEe---cCCCChHHCCCccCHHHH
Confidence 9998888888877777889875444322 234555667653 44434
|
| >1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-08 Score=98.08 Aligned_cols=90 Identities=12% Similarity=0.242 Sum_probs=63.8
Q ss_pred CEEEEEeCCC------CcHHHHHHHHHHCCCEEEEEeCCCCh-hccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHH
Q 039743 6 ELVLILDYGS------QYTHLITRRIRSLSILSLCLSGTCSL-DDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEW 76 (531)
Q Consensus 6 ~~I~IlD~G~------~~~~~i~r~l~~~G~~~~v~~~~~~~-~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~ 76 (531)
++|+|||+++ .|.+++.++++++|+.+.++....+. +.+ .+.|+|+++||.....-.. ...+ .+.++.
T Consensus 32 ~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l--~~ad~I~lpGG~~~~~~~~l~~~gl-~~~l~~ 108 (229)
T 1fy2_A 32 RSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAI--EKAEIIIVGGGNTFQLLKESRERGL-LAPMAD 108 (229)
T ss_dssp CEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHH--HHCSEEEECCSCHHHHHHHHHHTTC-HHHHHH
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHH--hcCCEEEECCCcHHHHHHHHHHCCh-HHHHHH
Confidence 6899999997 78889999999999987765322222 333 4579999999865211100 0122 345555
Q ss_pred HHhCCCcEEEeeHHHHHHHHHc
Q 039743 77 ALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 77 ~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
+.++++|++|+|.|||+|+...
T Consensus 109 ~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 109 RVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp HHHTTCEEEEETHHHHHTSSBS
T ss_pred HHHcCCEEEEECHHHHhhcccc
Confidence 5677999999999999998743
|
| >3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-06 Score=84.42 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=93.2
Q ss_pred cceeeccCCCCCHHHHHHHHHHHh--------------------C-CcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 225 DHVICALSGGVDSTVAATLVHKAI--------------------G-DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~--------------------g-~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
+++++++|||+||+|+++|+.+++ + ..+-.+|+|+|...++-.+-+. .+++++|++++
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d-~~~~~ygL~L~ 137 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIE-ETSLRYSLSLY 137 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHH-HHHHHTTEEEE
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHH-HHHHHhCCcEE
Confidence 579999999999999999999875 1 4688999999998775555544 48899999877
Q ss_pred EEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
+..... . +..+ ..||+ +.+.. .+.+..++|.-.++ .+ |. ...+...
T Consensus 138 v~~p~~---------~-~~~~-~~cc~--------~~K~~-----P~~~AwitG~RR~e--~~----Ra----~l~~~e~ 183 (308)
T 3fwk_A 138 ESDRDK---------C-ETMA-EAFET--------FLQVF-----PETKAIVIGIRHTD--PF----GE----HLKPIQK 183 (308)
T ss_dssp ECCTTS---------C-CCHH-HHHHH--------HHHHC-----TTCCEEECCCCTTS--TT----CT----TCCSEEE
T ss_pred EeCCCC---------C-HHHH-HHHHH--------HHHhC-----CCCCEEEEEeecCC--cc----cC----CCCeeec
Confidence 764421 0 1111 12222 11111 12678889985553 11 11 0111111
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.+ .+. .++--+.||.+++..||.+|.+..+||..-++.+=|+
T Consensus 184 ~d-~~w---~~~iKVnPL~dWT~~DVW~YI~~~~LPynpLYd~GY~ 225 (308)
T 3fwk_A 184 TD-ANW---PDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFT 225 (308)
T ss_dssp CC-TTS---CSCEEECTTTTCCHHHHHHHHHHHTCCCCGGGGGTCS
T ss_pred cC-CCC---CCeEEEechhhCCHHHHHHHHHHcCCCCCcHHhcCCC
Confidence 10 000 1223578999999999999999999998878877666
|
| >3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-07 Score=89.00 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=62.8
Q ss_pred CEEEEEeCCCC------cHHHHHHHHHHCCCEEEEEeCCC-Chhcc--ccCCCCEEEEcCCCCCCCCCC-CCCChHHHHH
Q 039743 6 ELVLILDYGSQ------YTHLITRRIRSLSILSLCLSGTC-SLDDI--TAKNPRVVILSGGPHSVHSPD-APAFPAGFLE 75 (531)
Q Consensus 6 ~~I~IlD~G~~------~~~~i~r~l~~~G~~~~v~~~~~-~~~~~--~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l~~ 75 (531)
++|++|++++. |.+++.++++++|+.++++.... +.++. ...+.|+|+++||.....-.. ...-..+.++
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~~~gl~~~l~ 107 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKRTGADKLIL 107 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHHHHTHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHHCChHHHHH
Confidence 68999999886 78899999999999888774322 22221 135679999999754210000 0001134566
Q ss_pred HHHhCCCcEEEeeHHHHHHHH
Q 039743 76 WALSNGVYVLGICYGLQLMVQ 96 (531)
Q Consensus 76 ~~~~~~iPvLGIC~G~Qlla~ 96 (531)
.+.++|+|++|||.|||+++.
T Consensus 108 ~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 108 EEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp HHHHTTCEEEEETHHHHTTSS
T ss_pred HHHHcCCeEEEECHHHHHhcc
Confidence 667789999999999999976
|
| >1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=3.7e-07 Score=99.02 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=78.8
Q ss_pred hhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCC-------------cEEEEEEeCCCCChhHHHHHHHHHHHh
Q 039743 211 DEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGD-------------RLHCVFVDNGLLRYKERERVMDTFEKD 277 (531)
Q Consensus 211 ~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~-------------~v~~v~id~g~~~~~e~~~~~~~la~~ 277 (531)
+.+.+.++..+..+.+|.++||||+||+++++++++..+. ++.++++... ...|.+.+.+ +|+.
T Consensus 213 ~~L~~aV~~rl~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~--~~~E~~~A~~-vA~~ 289 (553)
T 1ct9_A 213 QALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP--GSPDLKAAQE-VANH 289 (553)
T ss_dssp HHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST--TCHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHhcCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC--CCcHHHHHHH-HHHH
Confidence 3344455555555678999999999999999999987543 2777777542 2357777765 8999
Q ss_pred CCCcEEEEECchH-HHHhhcCC----CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCcc
Q 039743 278 LHLPVTCVDATDQ-FLSKLKGV----IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344 (531)
Q Consensus 278 lgi~~~vvd~~~~-f~~~l~~~----~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~ 344 (531)
+|++|++++++.. +.+.+..+ ..|.. .++.+....-.+.+.|++.| ...+++|+..|++.
T Consensus 290 lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~l~~~a~~~g------~~vvLsG~GaDElf 354 (553)
T 1ct9_A 290 LGTVHHEIHFTVQEGLDAIRDVIYHIETYDV-TTIRASTPMYLMSRKIKAMG------IKMVLSGEGSDEVF 354 (553)
T ss_dssp HTCEEEEEECCHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHTT------CCEEECCTTHHHHH
T ss_pred hCCCCEEEECCHHHHHHHHHHHHHHhcCCCc-ccchHHHHHHHHHHHHHHcC------CeEEEECCCchhcc
Confidence 9999999999853 32322111 11211 00111111224455566666 89999999887765
|
| >1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.1e-07 Score=98.72 Aligned_cols=72 Identities=22% Similarity=0.253 Sum_probs=56.6
Q ss_pred hhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH
Q 039743 215 KCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ 290 (531)
Q Consensus 215 ~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~ 290 (531)
+.++..+..+.++.++||||+||+++++++++.. .++.++++.... .+|.+.+.+ +|+.+|++|++++++..
T Consensus 232 ~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~-~~v~tfti~~~~--~~E~~~A~~-vA~~lg~~h~~i~i~~~ 303 (513)
T 1jgt_A 232 KAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA-GELDTVSMGTDT--SNEFREARA-VVDHLRTRHREITIPTT 303 (513)
T ss_dssp HHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH-SSCEEEEEECSS--CCCHHHHHH-HHHHHTCEEEEEECCHH
T ss_pred HHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC-CCceEEEcCCCC--CCHHHHHHH-HHHHhCCCcEEEECCHH
Confidence 4444445446789999999999999999999874 667888876532 467777766 89999999999999853
|
| >1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=6.1e-07 Score=96.26 Aligned_cols=73 Identities=19% Similarity=0.131 Sum_probs=57.3
Q ss_pred hhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchH
Q 039743 214 VKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQ 290 (531)
Q Consensus 214 ~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~ 290 (531)
.+.++..+..+.++.++||||+||+++++++++. +.++.++++... ..+|.+.+.+ +|+.+|++|++++++..
T Consensus 228 ~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~~-~~~~~~~t~~~~--~~~E~~~A~~-vA~~lg~~h~~i~~~~~ 300 (503)
T 1q15_A 228 NAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRH-FKKLNTYSIGTE--LSNEFEFSQQ-VADALGTHHQMKILSET 300 (503)
T ss_dssp HHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTT-CSEEEEEEEEET--TBCCHHHHHH-HHHHHTCEEEEEEECHH
T ss_pred HHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHHh-CCCcEEEEEeCC--CccHHHHHHH-HHHHhCCceEEEECCHH
Confidence 3445555554678999999999999999999886 567888888654 2467777766 89999999999999853
|
| >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.98 E-value=9.7e-06 Score=75.64 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=60.5
Q ss_pred CCEEEEEeCC-CCc--HHHHHHHHHHCCCEEEEEeCCCCh-----------------hccccCCCCEEEEcCCCCCCCCC
Q 039743 5 PELVLILDYG-SQY--THLITRRIRSLSILSLCLSGTCSL-----------------DDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 5 ~~~I~IlD~G-~~~--~~~i~r~l~~~G~~~~v~~~~~~~-----------------~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
+.+|+|+-+- ..- .......++++|+++.++..+... ++....++|+||+|||++ +.+.
T Consensus 23 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~-~~~l 101 (193)
T 1oi4_A 23 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS-PDYL 101 (193)
T ss_dssp CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH-HHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcC-HHHh
Confidence 4679988552 222 234678899999999887654321 111124689999999954 2111
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
....-..++++.+.++++||.|||.|.|+|+.+
T Consensus 102 ~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 102 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred hhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 001112356677777899999999999999986
|
| >4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.5e-05 Score=73.27 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEeCCCCc--HH--HHHHHHHHCCCEEEEEeCCC---------------ChhccccCCCCEEEEcCCCCCC
Q 039743 1 MENKPELVLILDYGSQY--TH--LITRRIRSLSILSLCLSGTC---------------SLDDITAKNPRVVILSGGPHSV 61 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~~~--~~--~i~r~l~~~G~~~~v~~~~~---------------~~~~~~~~~~dgiIlsGGp~s~ 61 (531)
|.++.++|+|+ .+.+| .. .-.+.|+++|+++.+...+. .++++...+||+|++|||++..
T Consensus 4 m~~t~~~v~il-~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~ 82 (177)
T 4hcj_A 4 MGKTNNILYVM-SGQNFQDEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCI 82 (177)
T ss_dssp -CCCCEEEEEC-CSEEECHHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGG
T ss_pred cccCCCEEEEE-CCCCccHHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHH
Confidence 33333445555 33334 22 24488999999998865432 2233334578999999997632
Q ss_pred CCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 62 HSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 62 ~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-... .-..++++.+.++++||.+||.|-++|+.+
T Consensus 83 ~l~~~-~~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 83 TLWDD-WRTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp GGTTC-HHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHhhC-HHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 11111 112367777788899999999999999985
|
| >3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00017 Score=65.32 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=59.0
Q ss_pred CEEEEEeC-CCCcHH--HHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLILDY-GSQYTH--LITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~--~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
++|+|+=+ |..-.. .....++..|+++.++..+.. .+++....+|+||+|||++...-.. .
T Consensus 3 ~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~-~ 81 (168)
T 3l18_A 3 MKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRL-N 81 (168)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTT-C
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhcc-C
Confidence 46888744 322222 355888999999888765321 2222223589999999974211011 1
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-..++++.+.++++||.+||-|.++|+.+
T Consensus 82 ~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 82 EKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp HHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 112356677778899999999999999985
|
| >2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00072 Score=62.38 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=59.3
Q ss_pred CCEEEEEeC-CCCc--HHHHHHHHHH-CCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCC
Q 039743 5 PELVLILDY-GSQY--THLITRRIRS-LSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPD 65 (531)
Q Consensus 5 ~~~I~IlD~-G~~~--~~~i~r~l~~-~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~ 65 (531)
|++|+|+=+ |..- .......+++ .|+++.++..+.. +++....++|+||+|||.+... ..
T Consensus 1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~-~~ 79 (188)
T 2fex_A 1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEK-GT 79 (188)
T ss_dssp CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHH-TC
T ss_pred CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccc-cc
Confidence 357888733 2111 2235678888 8999888765421 1122123689999999975211 11
Q ss_pred CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+. ..++++.+.++++||.+||-|.++|+.+
T Consensus 80 ~~~-l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 80 AAD-LGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCC-CHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred cHH-HHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 122 3467777788899999999999999985
|
| >4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00011 Score=68.08 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=59.7
Q ss_pred CCEEEEEeC-CCCcHH--HHHHHHHHCCCEEEEEeCCC--C--------------hhccccCCCCEEEEcCCCCCCCCCC
Q 039743 5 PELVLILDY-GSQYTH--LITRRIRSLSILSLCLSGTC--S--------------LDDITAKNPRVVILSGGPHSVHSPD 65 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~--~i~r~l~~~G~~~~v~~~~~--~--------------~~~~~~~~~dgiIlsGGp~s~~~~~ 65 (531)
+++|+|+=+ |..-.. .....++++|+++.++..+. + ++++....+|+||+|||........
T Consensus 5 ~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 84 (190)
T 4e08_A 5 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMG 84 (190)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHH
T ss_pred CcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhh
Confidence 357887744 322222 24589999999999886543 1 2222234689999999943111000
Q ss_pred CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
...-..++++.+.++++||.+||-|.++|+.+
T Consensus 85 ~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 85 ESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 00112356677778899999999999999985
|
| >3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00057 Score=65.92 Aligned_cols=93 Identities=10% Similarity=0.135 Sum_probs=60.1
Q ss_pred CEEEEEeCC----CCc--HH--HHHHHHHHCCCEEEEEeCCCC---------------------------------hhcc
Q 039743 6 ELVLILDYG----SQY--TH--LITRRIRSLSILSLCLSGTCS---------------------------------LDDI 44 (531)
Q Consensus 6 ~~I~IlD~G----~~~--~~--~i~r~l~~~G~~~~v~~~~~~---------------------------------~~~~ 44 (531)
++|+|+=.| .++ .. .....|+++|+++.++..+.. ++++
T Consensus 24 kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv 103 (242)
T 3l3b_A 24 LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQI 103 (242)
T ss_dssp CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGC
T ss_pred CEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHC
Confidence 589988542 223 22 245889999999988765321 1122
Q ss_pred ccCCCCEEEEcCCCCCC-----C-CC--CCCCC---hHHHHHHHHhCCCcEEEeeHHHHHHHHHc
Q 039743 45 TAKNPRVVILSGGPHSV-----H-SP--DAPAF---PAGFLEWALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 45 ~~~~~dgiIlsGGp~s~-----~-~~--~~~~~---~~~l~~~~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
...++|+||||||.+.. + .. +.... ..++++.+.++++||.+||-|.++|+.+-
T Consensus 104 ~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 104 RVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp CGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred CcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 23468999999997521 1 10 00111 23566777788999999999999999874
|
| >3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0007 Score=63.67 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=58.7
Q ss_pred CCEEEEEeC-CCCc--HHHHHHHHHHC-CCEEEEEeCCCC--------------hhccccCCCCEEEEcCCCCCCCCCCC
Q 039743 5 PELVLILDY-GSQY--THLITRRIRSL-SILSLCLSGTCS--------------LDDITAKNPRVVILSGGPHSVHSPDA 66 (531)
Q Consensus 5 ~~~I~IlD~-G~~~--~~~i~r~l~~~-G~~~~v~~~~~~--------------~~~~~~~~~dgiIlsGGp~s~~~~~~ 66 (531)
|++|+|+=+ |.+- ....+..+++. |+++.++..+.. ++++ ..++|.||+|||.+... .
T Consensus 3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~--~- 78 (206)
T 3f5d_A 3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSN--D- 78 (206)
T ss_dssp CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCC--C-
T ss_pred ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhh--c-
Confidence 667888833 2111 22467788887 888877654321 2222 23689999999985322 1
Q ss_pred CCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..-..++++.+.++++||.+||-|.++|+.+
T Consensus 79 ~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 79 NKKLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp CHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 1112356677777899999999999999985
|
| >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0003 Score=67.43 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=61.9
Q ss_pred CCEEEEEeCC----CCc--HHH--HHHHHHHCCCEEEEEeCCCC---------------------------------hhc
Q 039743 5 PELVLILDYG----SQY--THL--ITRRIRSLSILSLCLSGTCS---------------------------------LDD 43 (531)
Q Consensus 5 ~~~I~IlD~G----~~~--~~~--i~r~l~~~G~~~~v~~~~~~---------------------------------~~~ 43 (531)
|++|+|+=++ .++ ... ....|+++|+++.++..+.. +++
T Consensus 6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~ 85 (232)
T 1vhq_A 6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ 85 (232)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGG
T ss_pred CCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHH
Confidence 4679999662 233 222 34789999999988764321 111
Q ss_pred cccCCCCEEEEcCCCCC---CCCC-----C--CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHcC
Q 039743 44 ITAKNPRVVILSGGPHS---VHSP-----D--APAFPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 44 ~~~~~~dgiIlsGGp~s---~~~~-----~--~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~G 99 (531)
+...++|+||+|||.+. ..+. . ...-..++++.+.++++||.+||-|-++|+.++.
T Consensus 86 ~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 86 ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp CCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred cCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 11246899999999753 1110 0 0011235677777889999999999999999855
|
| >2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00013 Score=68.12 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=60.1
Q ss_pred CCEEEEEeC-CCCcH--HHHHHHHHHCCCEEEEEeCCCC----------------hhcc-ccCCCCEEEEcCCCCCCCCC
Q 039743 5 PELVLILDY-GSQYT--HLITRRIRSLSILSLCLSGTCS----------------LDDI-TAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~--~~i~r~l~~~G~~~~v~~~~~~----------------~~~~-~~~~~dgiIlsGGp~s~~~~ 64 (531)
+++|+|+=+ |.+-. ......++++|+.+.++..+.. +++. ...++|+||+|||+....+.
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l 82 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL 82 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHH
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHh
Confidence 357888755 33322 2355889999999988765321 1122 12578999999996422110
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
....-..++++.+.++++||.+||-|.++|+.+
T Consensus 83 ~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 83 SESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 000112356677778899999999999999985
|
| >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00032 Score=64.84 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=58.3
Q ss_pred CCEEEEEeC-CCCcHH--HHHHHHHHCCCEEEEEeCCCC--------------------hhccccCCCCEEEEcCCCCCC
Q 039743 5 PELVLILDY-GSQYTH--LITRRIRSLSILSLCLSGTCS--------------------LDDITAKNPRVVILSGGPHSV 61 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~~--~i~r~l~~~G~~~~v~~~~~~--------------------~~~~~~~~~dgiIlsGGp~s~ 61 (531)
+.+|+|+=+ |.+... .....+++.|+++.++..+.. ++++...++|+||++||+...
T Consensus 9 ~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~ 88 (190)
T 2vrn_A 9 GKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNP 88 (190)
T ss_dssp TCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhH
Confidence 357888844 222222 245889999998887754321 111112468999999997422
Q ss_pred CCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 62 HSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 62 ~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+.....-..++++.+.++++||.+||.|.++|+.+
T Consensus 89 ~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 89 DKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred HHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 111011112356677778899999999999999985
|
| >1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00033 Score=66.57 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=60.1
Q ss_pred CCC-CEEEEEeCC---------CCc--H--HHHHHHHHHCCCEEEEEeCCCC-----h----------------------
Q 039743 3 NKP-ELVLILDYG---------SQY--T--HLITRRIRSLSILSLCLSGTCS-----L---------------------- 41 (531)
Q Consensus 3 ~~~-~~I~IlD~G---------~~~--~--~~i~r~l~~~G~~~~v~~~~~~-----~---------------------- 41 (531)
|+| ++|+|+=++ .++ . ......|+++|+++.++..+.. .
T Consensus 2 ~~m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (224)
T 1u9c_A 2 NAMSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTAR 81 (224)
T ss_dssp --CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEE
T ss_pred CCCCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCC
Confidence 455 578888552 223 2 2345788899999988764321 0
Q ss_pred -hccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 42 -DDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 42 -~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
+++....+|+||++||.+...+.....-..++++.+.++++||.+||-|.++|+.+
T Consensus 82 l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 82 LSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp CCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 11112469999999997642111111112366777778899999999999998865
|
| >3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00015 Score=68.26 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=58.5
Q ss_pred CCCCC-CEEEEEeCC-CCcHH--HHHHHHHHCCCEEEEEeCCC--C--------------hhccccCCCCEEEEcCCCCC
Q 039743 1 MENKP-ELVLILDYG-SQYTH--LITRRIRSLSILSLCLSGTC--S--------------LDDITAKNPRVVILSGGPHS 60 (531)
Q Consensus 1 ~~~~~-~~I~IlD~G-~~~~~--~i~r~l~~~G~~~~v~~~~~--~--------------~~~~~~~~~dgiIlsGGp~s 60 (531)
|+++| ++|+|+=+- ..-.. .....++.+|+++.++..+. + ++++....+|.||++||...
T Consensus 4 ~~~~m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~ 83 (208)
T 3ot1_A 4 MEQGMSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG 83 (208)
T ss_dssp -----CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHH
T ss_pred cccccCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchH
Confidence 56666 478888543 22222 34588999999998876642 1 12221246899999999632
Q ss_pred CCCCCCCCChHHHHHHHHhCCCcEEEeeHHH-HHHHHH
Q 039743 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGL-QLMVQK 97 (531)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~-Qlla~~ 97 (531)
........-..++++.+.++++||.+||-|. .+|+.+
T Consensus 84 ~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 84 AQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred HHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 1110001112356777778899999999998 888763
|
| >3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=62.56 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCCCEEEEEeC-CCCc--HHHHHHHHH--------HCCCEEEEEeCCCC---------------hhccccCCCCEEEEcC
Q 039743 3 NKPELVLILDY-GSQY--THLITRRIR--------SLSILSLCLSGTCS---------------LDDITAKNPRVVILSG 56 (531)
Q Consensus 3 ~~~~~I~IlD~-G~~~--~~~i~r~l~--------~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsG 56 (531)
++|.+|+|+=+ |..- .......++ +.|+++.++..+.. ++++....+|.||+||
T Consensus 3 m~m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpG 82 (212)
T 3efe_A 3 MQTKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPG 82 (212)
T ss_dssp --CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECC
T ss_pred CcccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECC
Confidence 34667888733 2221 234567777 56788887654321 1222233799999999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 57 GPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 57 Gp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
|.+... .. ..-..++++.+.++++||.+||-|..+|+.+
T Consensus 83 G~~~~~-~~-~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 83 GTTWSE-EI-HQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp CSCTTS-GG-GHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred CCcccc-cc-CHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 975311 11 0112356666677899999999999999985
|
| >2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00026 Score=66.49 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=59.0
Q ss_pred CEEEEEeC-CCCcHH--HHHHHHHHCCCEEEEEeCCCC------------------hhccccCCCCEEEEcCCCCCCCCC
Q 039743 6 ELVLILDY-GSQYTH--LITRRIRSLSILSLCLSGTCS------------------LDDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~--~i~r~l~~~G~~~~v~~~~~~------------------~~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
++|+|+=+ |..-.. .....++++|+++.++..+.. ++++...++|+||+|||...+.+.
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l 82 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECF 82 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHh
Confidence 46888754 333322 245789999999988765432 112222578999999996432110
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHHH-HHHHHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYGL-QLMVQK 97 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G~-Qlla~~ 97 (531)
....-..++++.+.++++||.+||-|. ++|+.+
T Consensus 83 ~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 83 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred ccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 001112356677778899999999999 999864
|
| >3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00028 Score=68.32 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=36.6
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+||+|+++||.+...+-....-..++++.+.++++||.+||.|-++|+.+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 468999999998632211111112467777888999999999999999875
|
| >3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.002 Score=60.27 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEeCCC-CcHH--HHHHHHHHCC------CEEEEEeCCC--------------ChhccccCCCCEEEEcCC
Q 039743 1 MENKPELVLILDYGS-QYTH--LITRRIRSLS------ILSLCLSGTC--------------SLDDITAKNPRVVILSGG 57 (531)
Q Consensus 1 ~~~~~~~I~IlD~G~-~~~~--~i~r~l~~~G------~~~~v~~~~~--------------~~~~~~~~~~dgiIlsGG 57 (531)
|..++.+|+|+=+-+ +-.. .....++.++ +++.++..+. .+++....++|.||+|||
T Consensus 1 ~~~~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG 80 (202)
T 3gra_A 1 MSLAPYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGG 80 (202)
T ss_dssp ----CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECC
T ss_pred CCCCcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCC
Confidence 666677888885532 2211 2345555543 6666655432 112222357899999999
Q ss_pred CCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 58 PHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 58 p~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
...... . .-..++++.+.+++++|.+||-|..+|+.+
T Consensus 81 ~~~~~~-~--~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 81 LRTPLK-Y--PELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp TTCCSC-C--TTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred Cchhhc-c--HHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 864322 1 223466777777899999999999999986
|
| >3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0041 Score=67.88 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=62.6
Q ss_pred CEEEEE-eCCCCcH----HHHHHHHHHCCCEEEEEeCCC------ChhccccCCCCEEEEcCCCCCCCC----CCCC---
Q 039743 6 ELVLIL-DYGSQYT----HLITRRIRSLSILSLCLSGTC------SLDDITAKNPRVVILSGGPHSVHS----PDAP--- 67 (531)
Q Consensus 6 ~~I~Il-D~G~~~~----~~i~r~l~~~G~~~~v~~~~~------~~~~~~~~~~dgiIlsGGp~s~~~----~~~~--- 67 (531)
.||+|| .-| .+. .....+|++.|+.++++.... ..++.....||+|||+||...... .+..
T Consensus 538 rKVaILvadG-~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~ 616 (688)
T 3ej6_A 538 LRVGVLSTTK-GGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPA 616 (688)
T ss_dssp CEEEEECCSS-SSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCT
T ss_pred CEEEEEccCC-CccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhccC
Confidence 479888 223 243 345699999999999986532 233333456999999999764210 0111
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-...+++.+.++++||-.||-|-|+|..+
T Consensus 617 ~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 617 GRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp THHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred HHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 112367778888999999999999999875
|
| >1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00054 Score=66.11 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=36.4
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|+||++||....++.....-..++++.+.++++||.+||-|-.+|+.+
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 368999999997642211111112367777788899999999999988875
|
| >3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0017 Score=61.01 Aligned_cols=95 Identities=9% Similarity=0.108 Sum_probs=55.1
Q ss_pred CCCCCCEEEEEeC-CCCcHH--HHHHHHHHCC-------CEEEEEeCCC---------------ChhccccCCCCEEEEc
Q 039743 1 MENKPELVLILDY-GSQYTH--LITRRIRSLS-------ILSLCLSGTC---------------SLDDITAKNPRVVILS 55 (531)
Q Consensus 1 ~~~~~~~I~IlD~-G~~~~~--~i~r~l~~~G-------~~~~v~~~~~---------------~~~~~~~~~~dgiIls 55 (531)
|++++.+|+|+=+ |.+-.. .....++.++ +++.++..+. .+++ ..++|.||+|
T Consensus 4 ~~~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~--~~~~D~livp 81 (209)
T 3er6_A 4 TNKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQS--FDFTNILIIG 81 (209)
T ss_dssp ---CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGG--CSCCSEEEEC
T ss_pred CCCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCccc--cCCCCEEEEC
Confidence 4455668888844 322222 2345555543 5666654332 1222 2468999999
Q ss_pred CCCCCCCCC-CCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 56 GGPHSVHSP-DAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 56 GGp~s~~~~-~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
||.+..... ....-..++++.+.+++++|.+||-|..+|+.+
T Consensus 82 Gg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 82 SIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 997521100 001112356667777899999999999999986
|
| >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0048 Score=56.00 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=46.0
Q ss_pred HCCCEEEEEeCCC----------------Chhcc--ccCCCCEEEEcCC--CCCCCCCC-CCC--ChHHHHHHHHhCCCc
Q 039743 27 SLSILSLCLSGTC----------------SLDDI--TAKNPRVVILSGG--PHSVHSPD-APA--FPAGFLEWALSNGVY 83 (531)
Q Consensus 27 ~~G~~~~v~~~~~----------------~~~~~--~~~~~dgiIlsGG--p~s~~~~~-~~~--~~~~l~~~~~~~~iP 83 (531)
+.|+++.++..+. .+++. ...++|+||+||| ...+.... .+. -..++++.+.++++|
T Consensus 27 ~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~ 106 (175)
T 3cne_A 27 ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKM 106 (175)
T ss_dssp HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCE
T ss_pred eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCE
Confidence 6789888876542 11222 2256899999999 52221100 001 112566677778999
Q ss_pred EEEeeHHHHHHHHH
Q 039743 84 VLGICYGLQLMVQK 97 (531)
Q Consensus 84 vLGIC~G~Qlla~~ 97 (531)
|.+||.|.++|+.+
T Consensus 107 i~aiC~G~~~La~a 120 (175)
T 3cne_A 107 MIGHCAGAMMFDFT 120 (175)
T ss_dssp EEEETTHHHHHHHT
T ss_pred EEEECHHHHHHHHC
Confidence 99999999999985
|
| >3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0015 Score=63.14 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=36.6
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+||+|++|||.+...+-.......++++.+.++++||.+||-|-.+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 458999999997632111111112467777888899999999999998875
|
| >3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0024 Score=70.13 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=58.9
Q ss_pred CEEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCC
Q 039743 6 ELVLILDYGSQY----THLITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDA 66 (531)
Q Consensus 6 ~~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~ 66 (531)
.+|+|| ...++ ......+|+++|+.+.++..... +++.....||+|||+|| +...-..
T Consensus 601 rKVaIL-laDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~Lr~- 677 (753)
T 3ttv_A 601 RVVAIL-LNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADIAD- 677 (753)
T ss_dssp CEEEEE-CCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGTTT-
T ss_pred CEEEEE-ecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHhhh-
Confidence 478888 22333 22456899999999998764321 12222335899999999 3211111
Q ss_pred CCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..-..++++.+.++++||-+||-|-++|+.+
T Consensus 678 d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 678 NGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred CHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 1112367777788899999999999999876
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0059 Score=63.08 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=59.4
Q ss_pred CEEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCCC-------------------------------hhccccCCCC
Q 039743 6 ELVLILDYGSQY----THLITRRIRSLSILSLCLSGTCS-------------------------------LDDITAKNPR 50 (531)
Q Consensus 6 ~~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~~-------------------------------~~~~~~~~~d 50 (531)
++|+|+=+ .++ .......|+++|+++.++..+.. +++.....+|
T Consensus 13 ~kv~ill~-dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 91 (396)
T 3uk7_A 13 RTVLILCG-DYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYD 91 (396)
T ss_dssp CEEEEECC-TTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred CeEEEEeC-CCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCC
Confidence 57888843 333 22345889999999988865421 1122224689
Q ss_pred EEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 51 VVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 51 giIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
+|+++||.+...... ..-..++++.+.++++||.+||-|.++|+.+
T Consensus 92 ~livpGG~~~~~~~~-~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 92 GLVIPGGRAPEYLAL-TASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp EEEECCBSHHHHHTT-CHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred EEEECCCcchhhccc-CHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 999999965211011 1112356677778899999999999999985
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0063 Score=62.91 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=60.2
Q ss_pred CCCEEEEEeCCCCc----HHHHHHHHHHCCCEEEEEeCCC-------------------------------ChhccccCC
Q 039743 4 KPELVLILDYGSQY----THLITRRIRSLSILSLCLSGTC-------------------------------SLDDITAKN 48 (531)
Q Consensus 4 ~~~~I~IlD~G~~~----~~~i~r~l~~~G~~~~v~~~~~-------------------------------~~~~~~~~~ 48 (531)
.+.+|+|+=+ .++ .......|+++|+++.++..+. ++++.....
T Consensus 204 ~~~ki~ill~-dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 282 (396)
T 3uk7_A 204 ANKRILFLCG-DYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSS 282 (396)
T ss_dssp CCCEEEEECC-TTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred ccceEEEEec-CCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCccc
Confidence 3467888843 233 2235578899999988875432 122222346
Q ss_pred CCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 49 PRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 49 ~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
+|.||+|||.+..+... ..-..++++.+.++++||.+||-|.++|+.+
T Consensus 283 ~D~livpGg~~~~~~~~-~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 283 YDALVIPGGRAPEYLAL-NEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp CSEEEECCBSHHHHHTT-CHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred CCEEEECCCcchhhhcc-CHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 89999999975211011 1112356677778899999999999999985
|
| >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0043 Score=63.33 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=58.8
Q ss_pred CCCEEEEEeCC-CCcHH--HHHHHHHHCCCEEEEEeCCCCh-----------------hccccCCCCEEEEcCCCCCCCC
Q 039743 4 KPELVLILDYG-SQYTH--LITRRIRSLSILSLCLSGTCSL-----------------DDITAKNPRVVILSGGPHSVHS 63 (531)
Q Consensus 4 ~~~~I~IlD~G-~~~~~--~i~r~l~~~G~~~~v~~~~~~~-----------------~~~~~~~~dgiIlsGGp~s~~~ 63 (531)
+|.+|+|+=+- ..-.. .....|+.+|+.+.++..+... +++....+|.||+|||.+.. .
T Consensus 9 ~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~-~ 87 (365)
T 3fse_A 9 GKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPD-K 87 (365)
T ss_dssp --CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHH-H
T ss_pred CceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchh-h
Confidence 35678888442 22222 3558899999998887654211 11112258999999997421 1
Q ss_pred CCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
-....-..++++.+.++++||.+||-|..+|+.+
T Consensus 88 l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 88 MRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp HTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 0011112356677778899999999999999985
|
| >2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.012 Score=64.37 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=60.9
Q ss_pred CEEEEEeCC-CCc----HHHHHHHHHHCCCEEEEEeCCCC------hhccccCCCCEEEEcCCCCCCCC-----------
Q 039743 6 ELVLILDYG-SQY----THLITRRIRSLSILSLCLSGTCS------LDDITAKNPRVVILSGGPHSVHS----------- 63 (531)
Q Consensus 6 ~~I~IlD~G-~~~----~~~i~r~l~~~G~~~~v~~~~~~------~~~~~~~~~dgiIlsGGp~s~~~----------- 63 (531)
.||+||=.. .++ ...+..+|++.|+.++++..... .++.....||+|||+||..+.+.
T Consensus 530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~ 609 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAG 609 (688)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTT
T ss_pred CEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccccc
Confidence 478888331 334 23466899999999999875431 12222456999999999543111
Q ss_pred --CCCC---CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 64 --PDAP---AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 64 --~~~~---~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+.. .-..++++.+.++++||-.||-|-++|..+
T Consensus 610 ~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 610 SGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp SCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred cchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 1111 112367777777899999999999999875
|
| >3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.013 Score=56.84 Aligned_cols=90 Identities=12% Similarity=0.186 Sum_probs=55.5
Q ss_pred CEEEEEeCCC-CcHH--HHHHHH-HHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCC-CCCCCCC
Q 039743 6 ELVLILDYGS-QYTH--LITRRI-RSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGP-HSVHSPD 65 (531)
Q Consensus 6 ~~I~IlD~G~-~~~~--~i~r~l-~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp-~s~~~~~ 65 (531)
.+|+|+=|-+ .-.. .....+ +..|+++.++..+.. +++. ...||.||++||. +......
T Consensus 24 ~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~-~~~yD~liVPGG~~g~~~l~~ 102 (253)
T 3ewn_A 24 EQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTC-PRDLTVLFAPGGTDGTLAAAS 102 (253)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTS-CSSCSEEEECCBSHHHHHHTT
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHc-CCCCCEEEECCCccchhhhcc
Confidence 5788885532 2222 234666 466888887764421 1111 1246999999997 4211011
Q ss_pred CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..-..++++.+.+++++|.+||-|..+|+.+
T Consensus 103 -~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 103 -DAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp -CHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred -CHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 1112356666777899999999999999985
|
| >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.013 Score=64.65 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=60.0
Q ss_pred CEEEEEeC-CCCcH--HHHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLILDY-GSQYT--HLITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~IlD~-G~~~~--~~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
.+|+||=+ |..-. ......|+.+|+.+.++..+.. ++++....+|+|||+||..........
T Consensus 535 rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~ 614 (715)
T 1sy7_A 535 RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKN 614 (715)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhccC
Confidence 57888844 32222 2355889999999998765421 111112358999999994321110001
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHHcC
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~G 99 (531)
.-...+++.+.++++||.+||-|..+|+.++|
T Consensus 615 ~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 615 GRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 11235677777889999999999999999854
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.014 Score=64.60 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=37.0
Q ss_pred CCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcc
Q 039743 421 VTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVR 461 (531)
Q Consensus 421 vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~ 461 (531)
.|.+.| ++||+||++..+.|.+.|+++++||+++||+|+.
T Consensus 584 ~~~~~~-~~lr~~d~~~~~~l~~~~~~~~~~q~~vv~~p~~ 623 (697)
T 2vxo_A 584 LTTGVL-STLRQADFEAHNILRESGYAGKISQMPVILTPLH 623 (697)
T ss_dssp SCHHHH-HHHHHHHHHHHHHHHHTTCGGGCSBCCEEEESCC
T ss_pred cchhHH-HHHHHHHHHHHHHHHhcccceeeeEEEEEEEeee
Confidence 456777 9999999999999999999999999999999975
|
| >3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.012 Score=55.33 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=54.2
Q ss_pred CCCCCCEEEEEeC-CCCcHH--HHHHHHHHC--CCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCC
Q 039743 1 MENKPELVLILDY-GSQYTH--LITRRIRSL--SILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHS 60 (531)
Q Consensus 1 ~~~~~~~I~IlD~-G~~~~~--~i~r~l~~~--G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s 60 (531)
|++ +.+|+|+=+ |..-.. .....|+.+ ++.+.++..+.. .++ ...+|.||+|||++.
T Consensus 1 m~~-~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~--~~~~D~livpGG~~~ 77 (211)
T 3mgk_A 1 MSL-SYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRD--ENIEKILFVPGGSGT 77 (211)
T ss_dssp ----CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCC--SSSEEEEEECCSTHH
T ss_pred CCC-ceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhh--CCCCCEEEECCCcch
Confidence 553 357888844 322222 345777776 466666543311 111 123799999999753
Q ss_pred CCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 61 VHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..-.. ..-..++++.+.+++++|.+||-|..+|+.+
T Consensus 78 ~~~~~-~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 78 REKVN-DDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp HHHTT-CHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred hhhcC-CHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 11001 1112356666677899999999999999984
|
| >3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.022 Score=54.23 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=55.1
Q ss_pred CEEEEEeCC-CCcHH--HHHHHHHH-CCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCC
Q 039743 6 ELVLILDYG-SQYTH--LITRRIRS-LSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDA 66 (531)
Q Consensus 6 ~~I~IlD~G-~~~~~--~i~r~l~~-~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~ 66 (531)
.+|+|+=|- .+-.. .....++. .|+++.++..+.. +++ ..++|.|+++||++......
T Consensus 6 ~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~--~~~~D~livpGG~g~~~~~~- 82 (231)
T 3noq_A 6 VQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFAD--CPPLDVICIPGGTGVGALME- 82 (231)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTT--CCCCSEEEECCSTTHHHHTT-
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhH--CCcCCEEEECCCCChhhhcc-
Confidence 478888443 22222 24467776 5777777654311 111 23689999999975311011
Q ss_pred CCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..-..++++.+.+++++|.+||-|..+|+.+
T Consensus 83 ~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 83 DPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp CHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 1112356666777899999999999999975
|
| >4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.044 Score=50.61 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=48.0
Q ss_pred CCCEEEEEeC-CCCcHHH--HHHHHHHCCCEEEEEeCCCC------------------hhccc-----cCCCCEEEEcCC
Q 039743 4 KPELVLILDY-GSQYTHL--ITRRIRSLSILSLCLSGTCS------------------LDDIT-----AKNPRVVILSGG 57 (531)
Q Consensus 4 ~~~~I~IlD~-G~~~~~~--i~r~l~~~G~~~~v~~~~~~------------------~~~~~-----~~~~dgiIlsGG 57 (531)
+|+||+|+=+ |.+-... ....|+++|+.+.++..... ++++. ..+||+||+|||
T Consensus 3 ~M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG 82 (194)
T 4gdh_A 3 HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGG 82 (194)
T ss_dssp --CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCC
T ss_pred CCCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCC
Confidence 4677888733 3332222 34788999987765532111 11111 124799999999
Q ss_pred CCCCCC-CCCCCChHHHHHHHHh-CCCcEEEeeHHHHHH
Q 039743 58 PHSVHS-PDAPAFPAGFLEWALS-NGVYVLGICYGLQLM 94 (531)
Q Consensus 58 p~s~~~-~~~~~~~~~l~~~~~~-~~iPvLGIC~G~Qll 94 (531)
...... ...+. ..++++.+.+ .++|+-.||-|..++
T Consensus 83 ~~~~~~l~~~~~-l~~~l~~~~~~~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 83 GLGAKTLSTTPF-VQQVVKEFYKKPNKWIGMICAGTLTA 120 (194)
T ss_dssp HHHHHHHHTCHH-HHHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred chhHhHhhhCHH-HHHHHHHhhhcCCceEEeecccccch
Confidence 532111 01111 2244544433 478999999998544
|
| >1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A | Back alignment and structure |
|---|
Probab=92.41 E-value=0.026 Score=55.77 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=36.5
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.++|+|||+||++...+.....-..++++.+.++++||.+||-|-.+|+.+
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLAL 194 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhh
Confidence 468999999997643221111112367777788899999999999987765
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.61 Score=39.53 Aligned_cols=89 Identities=21% Similarity=0.150 Sum_probs=51.7
Q ss_pred CCCCEEEEEeCC---CCcHHHHHHHHHHCCCEEEEEeCCC----------ChhccccCCCCEEEEcCCCCCCCCC-----
Q 039743 3 NKPELVLILDYG---SQYTHLITRRIRSLSILSLCLSGTC----------SLDDITAKNPRVVILSGGPHSVHSP----- 64 (531)
Q Consensus 3 ~~~~~I~IlD~G---~~~~~~i~r~l~~~G~~~~v~~~~~----------~~~~~~~~~~dgiIlsGGp~s~~~~----- 64 (531)
|++..|+|+-.. +.+.+.+.+.|.+.|+.+..+.... +++++ .. +|.+++.=.+..+.+-
T Consensus 2 ~~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dl-p~-vDlavi~~p~~~v~~~v~e~~ 79 (122)
T 3ff4_A 2 NAMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVI-EG-VDTVTLYINPQNQLSEYNYIL 79 (122)
T ss_dssp CCCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCC-TT-CCEEEECSCHHHHGGGHHHHH
T ss_pred CCCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHC-CC-CCEEEEEeCHHHHHHHHHHHH
Confidence 567789999443 3567889999999997443332211 11111 12 4544443322210000
Q ss_pred ----C----CC-CChHHHHHHHHhCCCcEEEeeHHHHH
Q 039743 65 ----D----AP-AFPAGFLEWALSNGVYVLGICYGLQL 93 (531)
Q Consensus 65 ----~----~~-~~~~~l~~~~~~~~iPvLGIC~G~Ql 93 (531)
. .+ ...+++.+.+.++|+.++|=|.|+++
T Consensus 80 ~~g~k~v~~~~G~~~~e~~~~a~~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 80 SLKPKRVIFNPGTENEELEEILSENGIEPVIGCTLVML 117 (122)
T ss_dssp HHCCSEEEECTTCCCHHHHHHHHHTTCEEEESCHHHHH
T ss_pred hcCCCEEEECCCCChHHHHHHHHHcCCeEECCcCeEEe
Confidence 0 00 11357888899999999999999876
|
| >3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.047 Score=52.15 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=49.5
Q ss_pred CCCEEEEEeC-CCCcHH--HHHHHHHHCC--CEEEEEeCCCC---------------hhccccCCCCEEEEcCC-CCCCC
Q 039743 4 KPELVLILDY-GSQYTH--LITRRIRSLS--ILSLCLSGTCS---------------LDDITAKNPRVVILSGG-PHSVH 62 (531)
Q Consensus 4 ~~~~I~IlD~-G~~~~~--~i~r~l~~~G--~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGG-p~s~~ 62 (531)
++.+|+|+=+ |..-.. .....++..+ +++.++. +.. +++ ...+|.||+||| ++..
T Consensus 19 ~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~--~~~~D~liVPGG~~g~~- 94 (236)
T 3bhn_A 19 GMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSE--VKEQDVVLITSGYRGIP- 94 (236)
T ss_dssp -CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGG--GGGCSEEEECCCTTHHH-
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCccccc--ccCCCEEEEcCCccCHh-
Confidence 3457888854 322222 2446676655 5666654 311 111 246899999999 4421
Q ss_pred CCCCCCChHHHHHHH-HhCCC-cEEEeeHHHHHHHHH
Q 039743 63 SPDAPAFPAGFLEWA-LSNGV-YVLGICYGLQLMVQK 97 (531)
Q Consensus 63 ~~~~~~~~~~l~~~~-~~~~i-PvLGIC~G~Qlla~~ 97 (531)
+. ...+.++++. .+++. +|.+||-|..+|+.+
T Consensus 95 ~l---~~~~~l~~~L~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 95 AA---LQDENFMSALKLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp HH---HTCHHHHHHCCCCTTTCEEEEETTHHHHHHHT
T ss_pred hh---ccCHHHHHHHHhCCCCCEEEEEcHHHHHHHHc
Confidence 00 0122333332 23455 999999999999985
|
| >3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=89.80 E-value=0.09 Score=51.79 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=58.7
Q ss_pred CEEEEEeCCC----CcHHHHHHHHHHCCC-EEEEEeCCCC----hhcc--ccCCCCEEEEcCCCCCCCCCC-CCCChHHH
Q 039743 6 ELVLILDYGS----QYTHLITRRIRSLSI-LSLCLSGTCS----LDDI--TAKNPRVVILSGGPHSVHSPD-APAFPAGF 73 (531)
Q Consensus 6 ~~I~IlD~G~----~~~~~i~r~l~~~G~-~~~v~~~~~~----~~~~--~~~~~dgiIlsGGp~s~~~~~-~~~~~~~l 73 (531)
++|++|-+-+ .|...+.+.++++|+ .+++++.... .+++ ...+.|+|+++||-...+-.. ...-..+.
T Consensus 57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~ 136 (291)
T 3en0_A 57 AIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLMDR 136 (291)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHHHH
Confidence 5799996544 345667788889999 6777765321 1111 134689999999965221110 01112356
Q ss_pred HHHHHhCC-CcEEEeeHHHHHHHH
Q 039743 74 LEWALSNG-VYVLGICYGLQLMVQ 96 (531)
Q Consensus 74 ~~~~~~~~-iPvLGIC~G~Qlla~ 96 (531)
++.+.++| +|+.|.|.|+-+++.
T Consensus 137 L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 137 IRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHHHHTTSSEEEEETHHHHTTSS
T ss_pred HHHHHHCCCeEEEEeCHHHHhhhH
Confidence 66677778 999999999988765
|
| >1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6 | Back alignment and structure |
|---|
Probab=89.18 E-value=7.1 Score=37.23 Aligned_cols=169 Identities=8% Similarity=0.013 Sum_probs=86.3
Q ss_pred HHHHHHHHCCCEEEEEeCCCChhcc---ccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHH--HHH
Q 039743 20 LITRRIRSLSILSLCLSGTCSLDDI---TAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGL--QLM 94 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~~~~~~---~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~--Qll 94 (531)
.++..|++.|+.+++...+.+...+ .+.++|.||+-|.... +.-.+. ..+-++...++|.+++||=.|+ +-.
T Consensus 36 ~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~--~~l~~~-~~~al~~~V~~GgG~vgiH~a~~~~~y 112 (252)
T 1t0b_A 36 VIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAH--DEVKDE-VVERVHRRVLEGMGLIVLHSGHFSKIF 112 (252)
T ss_dssp HHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCG--GGSCHH-HHHHHHHHHHTTCEEEEEGGGGGSHHH
T ss_pred HHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCC--CcCCHH-HHHHHHHHHHcCCCEEEEcccCCcHHH
Confidence 3478889999999886644332211 2578999999542110 000011 2244555677899999996653 445
Q ss_pred HHHcCCEEeecCcccce-eeeEEEe-cCCccccCCCCCceEEEEeeccC-cccc-CCCCcEEEEEe-CCC----cEEEEE
Q 039743 95 VQKLDGVVKVGEKQEYG-RMEILVE-RSSGIFGNKKVGHHQVVWMSHGD-EAVV-LPDGFEVVARS-QQG----AVAAVE 165 (531)
Q Consensus 95 a~~~GG~v~~~~~~e~G-~~~v~~~-~~~~l~~~~~~~~~~~v~~~H~~-~v~~-lp~g~~vla~s-~~~----~v~ai~ 165 (531)
...+||... .+..+-+ ...+.+. ++.|+.++++.. +.+..-.-+ .... ..++..++... .++ ...+..
T Consensus 113 ~~llGg~f~-~~~~~~~~~~~v~v~~~~HPit~gl~~~--f~~~dee~Y~~~~~~p~~~~~vl~~~~~~G~~~~~p~~w~ 189 (252)
T 1t0b_A 113 KKLMGTTCN-LKWREADEKERLWVVAPGHPIVEGIGPY--IELEQEEMYGEFFDIPEPDETIFISWFEGGEVFRSGCTFT 189 (252)
T ss_dssp HHHHCSCCC-CEEEEEEEEEEEEESCTTSGGGTTCCSE--EEEEEEEEEESCCCSCCCSEEEEEEEETTSCEEEEEEEEE
T ss_pred HhhhCCccc-CCCccCCceEEEEECCCCChhhcCCCCC--cEeccceeeeeccCCCCCCceEEeeeccCCccccEEEEEE
Confidence 567787632 1100001 1234443 467999999865 443211111 0012 22244555433 244 123334
Q ss_pred ECCCcEEEEe-cC-CC-CCCCcccchhhhhhe
Q 039743 166 NREKRLFGLQ-YH-PE-VTHSPEGMETLRYFL 194 (531)
Q Consensus 166 ~~~~~i~gvQ-FH-PE-~~~~~~g~~i~~~F~ 194 (531)
..+++++.+. .| ++ .-.++.=.+++.|=+
T Consensus 190 ~g~GRvfY~~lGH~~~~~~~~p~~~~ll~~gI 221 (252)
T 1t0b_A 190 RGKGKIFYFRPGHETYPTYHHPDVLKVIANAV 221 (252)
T ss_dssp ETTEEEEEECCCCTTSCGGGCHHHHHHHHHHH
T ss_pred ECCccEEEECCCCCCCcccCCHHHHHHHHHHH
Confidence 4566776664 89 54 223333334444433
|
| >2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 | Back alignment and structure |
|---|
Probab=86.95 E-value=0.64 Score=42.14 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=41.0
Q ss_pred CCCCCEEEEEeCCCCc--HHHHH----HHHHH-CCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 2 ENKPELVLILDYGSQY--THLIT----RRIRS-LSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 2 ~~~~~~I~IlD~G~~~--~~~i~----r~l~~-~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|.|++|+|+ |||.+ +..++ +.+++ .|++++++.... +.+++ .++|+||+ |.|. |....+.....+
T Consensus 1 ~~~M~kilii-y~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l--~~aD~ii~-gsP~--y~g~~~~~lk~f 74 (188)
T 2ark_A 1 SNAMGKVLVI-YDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDV--LWADGLAV-GSPT--NMGLVSWKMKRF 74 (188)
T ss_dssp CCCCEEEEEE-ECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHH--HHCSEEEE-EEEC--BTTBCCHHHHHH
T ss_pred CCCCCEEEEE-EECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHH--HhCCEEEE-EeCc--cCCcCCHHHHHH
Confidence 3667789998 45544 44444 45555 788888887643 33333 46799988 4443 433333333455
Q ss_pred HHHH
Q 039743 74 LEWA 77 (531)
Q Consensus 74 ~~~~ 77 (531)
+++.
T Consensus 75 ld~~ 78 (188)
T 2ark_A 75 FDDV 78 (188)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5553
|
| >4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae} | Back alignment and structure |
|---|
Probab=86.28 E-value=18 Score=35.04 Aligned_cols=147 Identities=7% Similarity=-0.075 Sum_probs=79.7
Q ss_pred CCEEEEEeCCCCc-----HHHHHHHHHHCC-CEEEEEeCCC---Chhcc--ccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 5 PELVLILDYGSQY-----THLITRRIRSLS-ILSLCLSGTC---SLDDI--TAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 5 ~~~I~IlD~G~~~-----~~~i~r~l~~~G-~~~~v~~~~~---~~~~~--~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
.-+|||++=+... ...+.+.|++.| +.+++..... +.+.+ .+.++|.||+.-. +... +.-..+.
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~-~~~l----~~~~~~~ 78 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYN-GDSW----PEETNRR 78 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCC-SSCC----CHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCC-CCcC----CHHHHHH
Confidence 4579999432222 346778888888 7887764320 11111 2578999997442 1111 1112344
Q ss_pred HHHHHhCCCcEEEeeHHHH------HHHHHcC-CEE------------------ee-------cCcccceeeeEEEe-cC
Q 039743 74 LEWALSNGVYVLGICYGLQ------LMVQKLD-GVV------------------KV-------GEKQEYGRMEILVE-RS 120 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Q------lla~~~G-G~v------------------~~-------~~~~e~G~~~v~~~-~~ 120 (531)
+....++|.+++|+..+.- .-.+.+| |.- .+ ...+......+.+. ++
T Consensus 79 l~~yV~~Ggglv~~H~a~~~~~~w~~y~~liG~g~f~~r~~~~gp~~~~~~g~~v~~~~~g~~~~Hp~~~~~~v~v~~~~ 158 (281)
T 4e5v_A 79 FLEYVQNGGGVVIYHAADNAFSKWPEFNRICALGGWEGRNENSGPYVYWKDGKLVKDSSAGPGGSHGRQHEYVLNGRDKV 158 (281)
T ss_dssp HHHHHHTTCEEEEEGGGGGSCTTCHHHHHHHSCBCCTTCSGGGCCEEEEETTEEEEECCSCCSCBCCSCEEEEEEESCSS
T ss_pred HHHHHHcCCCEEEEecccccCCCCHHHHHheecccccccccccccceeecccccccccccccccCCCCCceEEEEEcCCC
Confidence 4555677999999987542 2334556 532 00 11112223445554 56
Q ss_pred CccccCCCCCceEEEEeeccCccc-cCCCCcEEEEEeCC
Q 039743 121 SGIFGNKKVGHHQVVWMSHGDEAV-VLPDGFEVVARSQQ 158 (531)
Q Consensus 121 ~~l~~~~~~~~~~~v~~~H~~~v~-~lp~g~~vla~s~~ 158 (531)
.|+.+++++. +.....--|... ...++..+|++...
T Consensus 159 HPit~Gl~~~--~~~~~dE~Y~~~~~p~~~~~VL~t~~~ 195 (281)
T 4e5v_A 159 HPVVKGLPLK--WRHAKDELYDRMRGPGNIRDILYTAYS 195 (281)
T ss_dssp STTTTTSCSE--EEEEEECCCBSCBSCCCEEEEEEEEEC
T ss_pred CchhhCCCCc--ccccccCCcccccCCCCCCEEEEEEec
Confidence 7999999875 442222222222 23357889987643
|
| >3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=84.68 E-value=1.3 Score=42.56 Aligned_cols=81 Identities=17% Similarity=0.080 Sum_probs=47.1
Q ss_pred CCCCCEEEEEeCCCCc---HHHHHHHHHHCCCEEEEEeCCCChhc-cccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHH
Q 039743 2 ENKPELVLILDYGSQY---THLITRRIRSLSILSLCLSGTCSLDD-ITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWA 77 (531)
Q Consensus 2 ~~~~~~I~IlD~G~~~---~~~i~r~l~~~G~~~~v~~~~~~~~~-~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~ 77 (531)
+|.|++|||++ |++| ...+...|++.|+.+.+++......+ ..+.+||.||++--+.... ..-..+.++..
T Consensus 1 ~~~m~~vLiV~-g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l----~~~~~~~L~~y 75 (259)
T 3rht_A 1 SNAMTRVLYCG-DTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERM----TAQAIDQLVTM 75 (259)
T ss_dssp -----CEEEEE-SSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGB----CHHHHHHHHHH
T ss_pred CCCCceEEEEC-CCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccC----CHHHHHHHHHH
Confidence 36788999996 6655 55688899999999999886543222 1257899999973221101 11112344444
Q ss_pred HhCCCcEEEe
Q 039743 78 LSNGVYVLGI 87 (531)
Q Consensus 78 ~~~~iPvLGI 87 (531)
.++|-=++.+
T Consensus 76 V~~GGgLi~~ 85 (259)
T 3rht_A 76 VKAGCGLVML 85 (259)
T ss_dssp HHTTCEEEEE
T ss_pred HHhCCeEEEe
Confidence 5556556555
|
| >2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=83.41 E-value=0.83 Score=44.64 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=48.5
Q ss_pred CCCCCCEEEEEeC-CC----CcHHHHHHHHHHCCCEEEEEeCCC-----------ChhccccCCCCEEEEcCCCCCCCCC
Q 039743 1 MENKPELVLILDY-GS----QYTHLITRRIRSLSILSLCLSGTC-----------SLDDITAKNPRVVILSGGPHSVHSP 64 (531)
Q Consensus 1 ~~~~~~~I~IlD~-G~----~~~~~i~r~l~~~G~~~~v~~~~~-----------~~~~~~~~~~dgiIlsGGp~s~~~~ 64 (531)
|.+.|++|+|+-. ++ .....+.+++++.|+++.+.+... ..+. ...++|.||..||-++
T Consensus 1 m~~~mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~~GGDGT---- 75 (292)
T 2an1_A 1 MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAE-IGQQADLAVVVGGDGN---- 75 (292)
T ss_dssp ---CCCEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHH-HHHHCSEEEECSCHHH----
T ss_pred CCCcCcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhh-cccCCCEEEEEcCcHH----
Confidence 5666778888833 22 235568899999999887654210 0111 1345799999999653
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeeHH
Q 039743 65 DAPAFPAGFLEWALSNGVYVLGICYG 90 (531)
Q Consensus 65 ~~~~~~~~l~~~~~~~~iPvLGIC~G 90 (531)
.....+.+...++|+|||=.|
T Consensus 76 -----~l~a~~~~~~~~~P~lGI~~G 96 (292)
T 2an1_A 76 -----MLGAARTLARYDINVIGINRG 96 (292)
T ss_dssp -----HHHHHHHHTTSSCEEEEBCSS
T ss_pred -----HHHHHHHhhcCCCCEEEEECC
Confidence 234445544558999999544
|
| >2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* | Back alignment and structure |
|---|
Probab=82.73 E-value=2 Score=38.83 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=22.1
Q ss_pred CCCEEEEEeCCCC--cHHHH----HHHHHHCCCEEEEEeCCC
Q 039743 4 KPELVLILDYGSQ--YTHLI----TRRIRSLSILSLCLSGTC 39 (531)
Q Consensus 4 ~~~~I~IlD~G~~--~~~~i----~r~l~~~G~~~~v~~~~~ 39 (531)
+|++|+|+- ||. ++..+ ++.+++.|++++++....
T Consensus 4 ~M~kilii~-~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 4 SSPYILVLY-YSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp -CCEEEEEE-CCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred CcceEEEEE-eCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 356899984 443 34444 455566789988876543
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=80.27 E-value=8.7 Score=37.91 Aligned_cols=84 Identities=10% Similarity=0.070 Sum_probs=55.2
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCCh---hccc---------------c-CCCCEEEEcCCCCCCC
Q 039743 2 ENKPELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSL---DDIT---------------A-KNPRVVILSGGPHSVH 62 (531)
Q Consensus 2 ~~~~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~---~~~~---------------~-~~~dgiIlsGGp~s~~ 62 (531)
+|.|++|.|+-.|..-...+|+.|.+.|..+.+....... +.+. . .++|-||+|.|-.
T Consensus 1 ~~~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~--- 77 (326)
T 3eag_A 1 SNAMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAK--- 77 (326)
T ss_dssp --CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCC---
T ss_pred CCCCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcC---
Confidence 3678899999998876666899999999999987653211 1111 1 2467777766532
Q ss_pred CCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 63 SPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 63 ~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
+ ....++.+.++++||++= .|+++..
T Consensus 78 -~-----~~p~~~~a~~~gi~v~~~---~e~~~~~ 103 (326)
T 3eag_A 78 -R-----GMDVVEAILNLGLPYISG---PQWLSEN 103 (326)
T ss_dssp -T-----TCHHHHHHHHTTCCEEEH---HHHHHHH
T ss_pred -C-----CCHHHHHHHHcCCcEEeH---HHHHHHH
Confidence 1 123456678889999874 5777664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 531 | ||||
| d1gpma3 | 121 | d.52.2.1 (A:405-525) GMP synthetase C-terminal dim | 2e-54 | |
| d1gpma1 | 197 | c.26.2.1 (A:208-404) GMP synthetase, central domai | 3e-37 | |
| d1gpma2 | 205 | c.23.16.1 (A:3-207) GMP synthetase {Escherichia co | 2e-31 | |
| d2a9va1 | 196 | c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA | 8e-27 | |
| d1wl8a1 | 188 | c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA | 9e-26 | |
| d1i7qb_ | 192 | c.23.16.1 (B:) Anthranilate synthase GAT subunit, | 1e-20 | |
| d1qdlb_ | 195 | c.23.16.1 (B:) Anthranilate synthase GAT subunit, | 2e-20 | |
| d2c5sa1 | 218 | c.26.2.6 (A:174-391) Thiamine biosynthesis protein | 8e-19 | |
| d1a9xb2 | 228 | c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe | 7e-18 | |
| d1l9xa_ | 288 | c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho | 7e-16 | |
| d2ghra1 | 281 | c.23.16.8 (A:17-297) Homoserine O-succinyltransfer | 3e-13 | |
| d1jvna2 | 232 | c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain | 2e-12 | |
| d1xnga1 | 255 | c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase { | 3e-12 | |
| d2abwa1 | 218 | c.23.16.1 (A:2-219) Pyridoxine biosynthesis protei | 1e-10 | |
| d1ka9h_ | 195 | c.23.16.1 (H:) GAT subunit, HisH, (or domain) of i | 2e-10 | |
| d2nv0a1 | 195 | c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bac | 2e-09 | |
| d1j20a1 | 165 | c.26.2.1 (A:1-165) Argininosuccinate synthetase, N | 3e-09 | |
| d1k9vf_ | 200 | c.23.16.1 (F:) GAT subunit, HisH, (or domain) of i | 8e-09 | |
| d2pg3a1 | 230 | c.26.2.1 (A:1-230) Queuosine biosynthesis protein | 8e-07 | |
| d1k92a1 | 188 | c.26.2.1 (A:1-188) Argininosuccinate synthetase, N | 1e-06 | |
| d1wxia1 | 274 | c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase { | 5e-05 | |
| d1o1ya_ | 230 | c.23.16.1 (A:) Hypothetical protein TM1158 {Thermo | 6e-05 | |
| d1ni5a1 | 227 | c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, T | 4e-04 | |
| d1vl2a1 | 168 | c.26.2.1 (A:2-169) Argininosuccinate synthetase, N | 7e-04 | |
| d1q7ra_ | 202 | c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus | 0.001 | |
| d1wy5a1 | 216 | c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aqui | 0.002 |
| >d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: GMP synthetase C-terminal dimerisation domain family: GMP synthetase C-terminal dimerisation domain domain: GMP synthetase C-terminal dimerisation domain species: Escherichia coli [TaxId: 562]
Score = 177 bits (450), Expect = 2e-54
Identities = 68/122 (55%), Positives = 88/122 (72%), Gaps = 1/122 (0%)
Query: 410 GPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQ 469
GPGL VRVLG+V + D+LR+ D IFI+ +++A LYD + QAF VFLPVRSVGV GD
Sbjct: 1 GPGLGVRVLGEVKK-EYCDLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVGVMGDG 59
Query: 470 RTHSHVVALRAVTSQDGMTADWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIE 529
R + VV+LRAV + D MTA W + + FL V+ +I N V G++RVV DI+ KPP+TIE
Sbjct: 60 RKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIE 119
Query: 530 WE 531
WE
Sbjct: 120 WE 121
|
| >d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: GMP synthetase, central domain species: Escherichia coli [TaxId: 562]
Score = 134 bits (336), Expect = 3e-37
Identities = 99/206 (48%), Positives = 124/206 (60%), Gaps = 9/206 (4%)
Query: 204 WKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR 263
W ++D+ V I++ VG +D VI LSGGVDS+V A L+H+AIG L CVFVDNGLLR
Sbjct: 1 WTPAKIIDDAVARIREQVG-DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLR 59
Query: 264 YKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDL 323
E E+V+D F L + V A D+FLS L G DPE KRKIIG+ F+ +FD A L
Sbjct: 60 LNEAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKL 119
Query: 324 EQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKL 383
E + + +H IKSHHNVGGLPK+MK+ L+EPLK
Sbjct: 120 EDVKWLAQGT--------IYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKE 171
Query: 384 LFKDEVRQLGRILNVPEQFLKRHPFP 409
LFKDEVR++G L +P L RHPFP
Sbjct: 172 LFKDEVRKIGLELGLPYDMLYRHPFP 197
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Score = 118 bits (297), Expect = 2e-31
Identities = 73/201 (36%), Positives = 108/201 (53%), Gaps = 10/201 (4%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
+LILD+GSQYT L+ RR+R L + + + I NP +ILSGGP S ++P
Sbjct: 8 ILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSP 67
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNK 127
P ++ GV V G+CYG+Q M +L G V+ ++E+G ++ V S +
Sbjct: 68 RAP----QYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGI 123
Query: 128 KVGHH------QVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVT 181
+ VWMSHGD+ +P F VA ++ A + N EKR +G+Q+HPEVT
Sbjct: 124 EDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVT 183
Query: 182 HSPEGMETLRYFLFDVCGVNA 202
H+ +GM L F+ D+C A
Sbjct: 184 HTRQGMRMLERFVRDICQCEA 204
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 105 bits (262), Expect = 8e-27
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 7/200 (3%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
+ ++D G Q+TH R +R L + + + ++ + V+
Sbjct: 4 IYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDKLG 63
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNK 127
+ ++ + +LGIC G Q + V + E+G+ ++ V S IFG
Sbjct: 64 SVG----KYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSENIFGG- 118
Query: 128 KVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGM 187
+ VW +H DE + LPD F + A S V ++ + ++ Q+HPEV H+ G
Sbjct: 119 -LPSEITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGR 177
Query: 188 ETLRYFLFDVCGVNAGWKLE 207
+ R F+ +C + E
Sbjct: 178 DIFRNFI-GICASYREIQKE 196
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Score = 87.6 bits (216), Expect = 1e-20
Identities = 37/191 (19%), Positives = 68/191 (35%), Gaps = 11/191 (5%)
Query: 8 VLILDYGSQYTHLITRRIRSL----SILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHS 63
+L+LD +T+ + ++R+ I + ++ + V++LS GP +
Sbjct: 3 ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE 62
Query: 64 PDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGI 123
L + ++GIC G Q +V+ G V + +G+ + G+
Sbjct: 63 AGCMPEL----LQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGM 118
Query: 124 FGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183
F + S V V AV + +R+ G Q+HPE +
Sbjct: 119 FAGMANPLPVARYHSLVGSN---IPADLTVNARFGEMVMAVRDDRRRVCGFQFHPESILT 175
Query: 184 PEGMETLRYFL 194
G L L
Sbjct: 176 THGARLLEQTL 186
|
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 87.3 bits (215), Expect = 2e-20
Identities = 32/194 (16%), Positives = 72/194 (37%), Gaps = 6/194 (3%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLS-GTCSLDDITAKNPRVVILSGGPHSVHSPDA 66
LI+D + + I + + L + + S+ I +P +I+S GP + +
Sbjct: 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRED 63
Query: 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVV---KVGEKQEYGRMEILVERSSGI 123
+++ +LG+C G Q + + + + + ++ +
Sbjct: 64 IGVSLDVIKYLGKR-TPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSL 122
Query: 124 FGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHS 183
+ + S + V P ++ + A+ + E ++G+Q+HPE +
Sbjct: 123 YYGIAKEFKATRYHSLVVDEVHRPL-IVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGT 181
Query: 184 PEGMETLRYFLFDV 197
G + L FL V
Sbjct: 182 SLGYKILYNFLNRV 195
|
| >d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: ThiI-like domain: Thiamine biosynthesis protein ThiI, C-terminal domain species: Bacillus anthracis [TaxId: 1392]
Score = 83.1 bits (204), Expect = 8e-19
Identities = 30/228 (13%), Positives = 70/228 (30%), Gaps = 20/228 (8%)
Query: 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHL 280
VG+ V+ LSGG+DS VAA L K G + V + + ++ + ++L
Sbjct: 1 VGVGGKVMVLLSGGIDSPVAAYLTMKR-GVSVEAVHFHSPPFTSERAKQKVIDLAQELTK 59
Query: 281 PVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLY 340
V ++++ I+ E + + ++ + G
Sbjct: 60 YCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNAL--AITTGESL 117
Query: 341 PDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPE 400
V ++ + + +I PL + K E+ ++ + +
Sbjct: 118 GQVASQT---------------LDSMHTINEVTNYPVIRPLITMDKLEIIKIAEEIGTYD 162
Query: 401 QFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYD 448
+ P+ T+ R + + + + +
Sbjct: 163 --ISIRPYEDCCTVFTPASPATKPKREKANRFEAKYDFTPLIDEAVAN 208
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 80.6 bits (198), Expect = 7e-18
Identities = 41/190 (21%), Positives = 62/190 (32%), Gaps = 15/190 (7%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVH-SPDA 66
V+ D+G++ I R + + S +D+ NP + LS GP A
Sbjct: 42 VVAYDFGAKRN--ILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYA 99
Query: 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGN 126
FLE + V GIC G QL+ G K +
Sbjct: 100 ITAIQKFLE----TDIPVFGICLGHQLLALAS------GAKTVKMKFGHHGGNHPVKDVE 149
Query: 127 KKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQ-GAVAAVENREKRLFGLQYHPEVTHSPE 185
K V + LP V +S G + + +K F Q +PE + P
Sbjct: 150 KNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGNPEASPGPH 209
Query: 186 GMETL-RYFL 194
L +F+
Sbjct: 210 DAAPLFDHFI 219
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.7 bits (185), Expect = 7e-16
Identities = 31/212 (14%), Positives = 65/212 (30%), Gaps = 41/212 (19%)
Query: 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWAL-----SNGVYVLGICYGLQLMVQKLDGV 101
K+ ++ GG + D F ++ + V G C G + + + G
Sbjct: 58 KSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGE 117
Query: 102 VKVGEKQEYGRMEILVERSSGIFGNKKVG------------------HHQVVWMSHGDEA 143
+ L + H + + +
Sbjct: 118 CLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMN 177
Query: 144 VVLPDGFEVVARSQQG---AVAAVENREKRLFGLQYHPE-----------VTHSPEGMET 189
L F V+ + G ++ +E + ++G+Q+HPE ++H+P ++T
Sbjct: 178 EKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKT 237
Query: 190 LRY---FLFDVCGVNAGWKLENVLDEEVKCIK 218
Y F + N ++ +EE I
Sbjct: 238 AFYLAEFFVNEARKN-NHHFKSESEEEKALIY 268
|
| >d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: HTS-like domain: Homoserine O-succinyltransferase HTS (MetA) species: Bacillus cereus [TaxId: 1396]
Score = 67.7 bits (165), Expect = 3e-13
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 7/150 (4%)
Query: 40 SLDDITAKNPRVVILSGGPHSVHSP-DAPAFPA--GFLEWALSNGVYVLGICYGLQLMVQ 96
+ DI + +I++G P S + + +E++ +N L IC+G Q +
Sbjct: 75 TFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLY 134
Query: 97 KLDGVVKVGEKQEYGR--MEILVERSSGIFGNKKVGHHQVV--WMSHGDEAVVLPDGFEV 152
GV K K++ + E+ + + + +
Sbjct: 135 HHYGVQKYPLKEKMFGVFEHEVREQHVKLLQGFDELFFAPHSRHTEVRESDIREVKELTL 194
Query: 153 VARSQQGAVAAVENREKRLFGLQYHPEVTH 182
+A S++ V V +E R H E +
Sbjct: 195 LANSEEAGVHLVIGQEGRQVFALGHSEYSC 224
|
| >d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Score = 65.0 bits (157), Expect = 2e-12
Identities = 37/226 (16%), Positives = 68/226 (30%), Gaps = 31/226 (13%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSG-GPHSVH-SPD 65
V ++D S +T I L + S D +IL G G +
Sbjct: 7 VHVIDVESGNLQSLTNAIEHLGYEVQLVK---SPKDFNISGTSRLILPGVGNYGHFVDNL 63
Query: 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIF- 124
+ + +G ++GIC GLQ + K + S
Sbjct: 64 FNRGFEKPIREYIESGKPIMGICVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVP 123
Query: 125 -------------------GNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGA---VA 162
+ H + + ++ L + +A+++ G+ +A
Sbjct: 124 EIGWNSCIPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIA 183
Query: 163 AVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNAGWKLEN 208
AV +F Q+HPE + G+ + FL + E
Sbjct: 184 AVNK--NNIFATQFHPEKSG-KAGLNVIENFLKQQSPPIPNYSAEE 226
|
| >d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: NH3-dependent NAD+-synthetase species: Helicobacter pylori [TaxId: 210]
Score = 64.6 bits (156), Expect = 3e-12
Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 30/207 (14%)
Query: 207 ENVLDEEVKCIKDTV---GLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR 263
+ ++ ++ V G + V+ LSGG+DS V L K + H + + + +
Sbjct: 4 QKLIVYLCDFLEKEVQKRGFK-KVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSM 62
Query: 264 YKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDL 323
+ + ++ EK +P T D RK + + + + L
Sbjct: 63 PENKTDALNLCEK-FSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSL 121
Query: 324 EQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKL 383
+ S+ + G L D+ I P+
Sbjct: 122 KSD------------------------SLVIGTSNKSERMLGYGTLFGDLA-CAINPIGE 156
Query: 384 LFKDEVRQLGRILNVPEQFLKRHPFPG 410
LFK EV +L R LN+P++ L + P
Sbjct: 157 LFKTEVYELARRLNIPKKILNKPPSAD 183
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 58.8 bits (141), Expect = 1e-10
Identities = 27/212 (12%), Positives = 54/212 (25%), Gaps = 32/212 (15%)
Query: 8 VLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA 66
+ +L G H+ L I SL + ++ D+ +++ GG +
Sbjct: 5 IGVLSLQGDFEPHI--NHFIKLQIPSLNIIQVRNVHDL--GLCDGLVIPGGESTTVRRCC 60
Query: 67 PAFPAGFLE----WALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSG 122
+ + G C G L+ + ++ + L
Sbjct: 61 AYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICR 120
Query: 123 IFGNKKV-----------------GHHQVVWMSHGDEAVVLPDGFEVVAR---SQQGAVA 162
F + + +L D +V+A G
Sbjct: 121 NFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIREILSDEVKVLATFSHESYGPNI 180
Query: 163 AVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
+ G +HPE+ +YF
Sbjct: 181 IAAVEQNNCLGTVFHPELLPHTAF---QQYFY 209
|
| >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Score = 58.1 bits (139), Expect = 2e-10
Identities = 21/198 (10%), Positives = 49/198 (24%), Gaps = 19/198 (9%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
L++DYGS + + + D + +++L G H A
Sbjct: 3 ALLIDYGSGNLRSAAKALEAAGFSVAVAQ-----DPKAHEEADLLVLPGQGHFGQVMRAF 57
Query: 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEK---------QEYGRMEILVE 118
+ + + + V G + + + +
Sbjct: 58 QESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQM 117
Query: 119 RSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGA--VAAVENREKRLFGLQY 176
+ + + + + +G A + + L Q+
Sbjct: 118 GWNALEFGGAFAPLTGRHFYFANSYYGPLTPYSLGKGEYEGTPFTALLAK--ENLLAPQF 175
Query: 177 HPEVTHSPEGMETLRYFL 194
HPE + G+ L
Sbjct: 176 HPEKSG-KAGLAFLALAR 192
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Score = 55.3 bits (132), Expect = 2e-09
Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 20/192 (10%)
Query: 10 ILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPA 68
+L G+ H+ I + L + L+++ +IL GG +
Sbjct: 6 VLGLQGAVREHI--HAIEACGAAGLVVKRPEQLNEVDG-----LILPGGESTTMRRLIDT 58
Query: 69 FPAGFLEWALSNGV-YVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEIL-----VERSSG 122
+ + + G C GL ++ +++ G +E V+
Sbjct: 59 YQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 123 IFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTH 182
K + + + EV++ VAA ++ + G +HPE+T
Sbjct: 119 DLTIKGLDEPFTGVFIRAPHILEAGENVEVLSEHNGRIVAA---KQGQFLGCSFHPELTE 175
Query: 183 SPEGMETLRYFL 194
+ F+
Sbjct: 176 ---DHRVTQLFV 184
|
| >d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 54.0 bits (128), Expect = 3e-09
Identities = 18/173 (10%), Positives = 51/173 (29%), Gaps = 12/173 (6%)
Query: 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286
++ A SGG+D+++ + + + + + +E E + + +
Sbjct: 3 IVLAYSGGLDTSIILKWLKETYRA--EVIAFTADIGQGEEVEEAREKALRTGA---SKAI 57
Query: 287 ATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIES 346
A D ++ + P + + + + + + A A + + E+
Sbjct: 58 ALDLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARP-------LIAKHLVRIAEEEGAEA 110
Query: 347 CPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVP 399
TG+ + P + + E+ +P
Sbjct: 111 IAHGATGKGNDQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIP 163
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Score = 53.5 bits (127), Expect = 8e-09
Identities = 26/196 (13%), Positives = 62/196 (31%), Gaps = 13/196 (6%)
Query: 8 VLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP 67
+ I+ G + R ++ S + ++ ++ + G H
Sbjct: 3 IGIISVGPGNIMNLYRGVKRASE-NFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRL 61
Query: 68 AFPA--GFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFG 125
F+ + + YV+G+C G+QL+ ++ + V + +
Sbjct: 62 RENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHM 121
Query: 126 NKKVGHHQVVW----MSHGDEAVVLPDGFEVVARSQQGA---VAAVENREKRLFGLQYHP 178
+ + + + V+ ++ +AV R+ G Q+HP
Sbjct: 122 GWNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRK--GRILGFQFHP 179
Query: 179 EVTHSPEGMETLRYFL 194
E + G + L +
Sbjct: 180 EKSS-KIGRKLLEKVI 194
|
| >d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Queuosine biosynthesis protein QueC species: Erwinia carotovora [TaxId: 554]
Score = 48.1 bits (113), Expect = 8e-07
Identities = 30/173 (17%), Positives = 45/173 (26%), Gaps = 4/173 (2%)
Query: 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286
+ SGG DST + D +HC+ D G E E + +K +D
Sbjct: 4 AVVVFSGGQDSTTCLIQALQD-YDDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLD 62
Query: 287 ATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQK-LGKKPAYLVQGTLYPDVIE 345
+ I + F L Y Q +
Sbjct: 63 VGLLNELATSSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITG 122
Query: 346 SCPP--PGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRIL 396
C G +K+ + L ++ PL L K E L
Sbjct: 123 VCETDFSGYPDCRDEFVKALNQAIVLGIARDIRFETPLMWLNKAETWALADYY 175
|
| >d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 46.9 bits (110), Expect = 1e-06
Identities = 17/180 (9%), Positives = 48/180 (26%), Gaps = 18/180 (10%)
Query: 227 VICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVD 286
+ A SGG+D++ A + + G + + G ++ + + + +D
Sbjct: 13 IGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLID 71
Query: 287 ATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIES 346
Q +++ I G + + ++ D
Sbjct: 72 CRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTY 131
Query: 347 CPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEP-------LKLLFKDEVRQLGRILNVP 399
+ + +L++ +P +L + E+ +
Sbjct: 132 KGNDIERFYRYGLL----------TNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFD 181
|
| >d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: NH3-dependent NAD+-synthetase species: Escherichia coli [TaxId: 562]
Score = 42.6 bits (99), Expect = 5e-05
Identities = 39/233 (16%), Positives = 67/233 (28%), Gaps = 32/233 (13%)
Query: 189 TLRYFLFDVCGVNAGWKLENVLDEEVKCIKDTV---GLEDHVICALSGGVDSTVAATLVH 245
TL+ + G E + V +K + ++ +SGG DST+A L
Sbjct: 1 TLQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQ 60
Query: 246 KAIG--------DRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKG 297
AI + L + V + + D V V+ L+ +
Sbjct: 61 MAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQA 120
Query: 298 VIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHS 357
+ + + + + + +V GT + TG
Sbjct: 121 LREAGIELSDFVRGNEKARERMKAQYSI--AGMTSGVVVGTDHAA------EAITGFFTK 172
Query: 358 HTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPG 410
+ I PL L K + +QL L PE K+ P
Sbjct: 173 YGDGGTD-------------INPLYRLNKRQGKQLLAALACPEHLYKKAPTAD 212
|
| >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein TM1158 species: Thermotoga maritima [TaxId: 2336]
Score = 42.3 bits (98), Expect = 6e-05
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 7/141 (4%)
Query: 45 TAKNPRVVILSGGPHSVHSPDAPAFPAG---FLEWALSNGVYVLGICYGLQLMVQKLDGV 101
+ +V+L GG + + F +E L + LGIC G Q++ + L
Sbjct: 45 PLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGAS 104
Query: 102 VKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAV 161
V G+ E + + S F + +V + LP V S++
Sbjct: 105 VYRGKNGEEIGWYFVEKVSDNKFFREFPDRLRVFQ--WHGDTFDLPRRATRVFTSEKYEN 162
Query: 162 AAVENREKRLFGLQYHPEVTH 182
+ GLQ+H EV
Sbjct: 163 Q--GFVYGKAVGLQFHIEVGA 181
|
| >d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PP-loop ATPase domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 39.7 bits (91), Expect = 4e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 225 DHVICALSGGVDSTVAATLVHKA----IGDRLHCVFVDNG 260
++ A SGG+DSTV + + G L + V +G
Sbjct: 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHG 53
|
| >d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 38.2 bits (87), Expect = 7e-04
Identities = 22/182 (12%), Positives = 47/182 (25%), Gaps = 23/182 (12%)
Query: 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284
+ V+ A SGG+D++V + + G + + G + + + + K V
Sbjct: 2 EKVVLAYSGGLDTSVILKWLCEK-GFDVIAYVANVG--QKDDFVAIKEKALKTGASKVYV 58
Query: 285 VDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVI 344
D +F++ Q +
Sbjct: 59 EDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEG----------- 107
Query: 345 ESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPL-------KLLFKDEVRQLGRILN 397
G T + + + LK+I P K + ++
Sbjct: 108 --AQYVAHGATGKGNDQVRFELTYAALNPNLKVISPWKDPEFLAKFKGRTDLINYAMEKG 165
Query: 398 VP 399
+P
Sbjct: 166 IP 167
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Score = 38.0 bits (87), Expect = 0.001
Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 18/157 (11%)
Query: 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVGE 106
+ ++L GG + L L +G + L + +
Sbjct: 42 EGLDGLVLPGGESTT---MRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD 98
Query: 107 KQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVV---------LPDGFEVVARSQ 157
+ G M+I VER+S + + V DG +V+A
Sbjct: 99 EPHLGLMDITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVEAGDGVDVLATYN 158
Query: 158 QGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194
VAA R+ + G +HPE+T ++YFL
Sbjct: 159 DRIVAA---RQGQFLGCSFHPELTD---DHRLMQYFL 189
|
| >d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PP-loop ATPase domain: TilS-like protein Aq 1887 species: Aquifex aeolicus [TaxId: 63363]
Score = 37.7 bits (86), Expect = 0.002
Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 12/176 (6%)
Query: 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283
E V+ A SGGVDS V ++ K L F + + ++ E+D
Sbjct: 24 ERRVLIAFSGGVDSVVLTDVLLK-----LKNYFSLKEVALAHFNHMLRESAERDEEFCKE 78
Query: 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDV 343
+ + K + K + E F + E + + D+
Sbjct: 79 FAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDL 138
Query: 344 IESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVP 399
+E+ T + + + + PL + + E+ + + +
Sbjct: 139 LETS-------LLFFTRGTGLDGLIGFLPKEEVIRRPLYYVKRSEIEEYAKFKGLR 187
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| d1gpma3 | 121 | GMP synthetase C-terminal dimerisation domain {Esc | 100.0 | |
| d2a9va1 | 196 | GMP synthase subunit A, GuaAA {Archaeon Thermoplas | 100.0 | |
| d1wl8a1 | 188 | GMP synthase subunit A, GuaAA {Archaeon Pyrococcus | 100.0 | |
| d1gpma2 | 205 | GMP synthetase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1qdlb_ | 195 | Anthranilate synthase GAT subunit, TrpG {Archaeon | 100.0 | |
| d1i7qb_ | 192 | Anthranilate synthase GAT subunit, TrpG {Serratia | 100.0 | |
| d1a9xb2 | 228 | Carbamoyl phosphate synthetase, small subunit C-te | 100.0 | |
| d1o1ya_ | 230 | Hypothetical protein TM1158 {Thermotoga maritima [ | 99.96 | |
| d1jvna2 | 232 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.95 | |
| d1l9xa_ | 288 | gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta | 99.94 | |
| d1ka9h_ | 195 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.93 | |
| d2nv0a1 | 195 | Hypothetical protein YaaE {Bacillus subtilis [TaxI | 99.93 | |
| d1gpma1 | 197 | GMP synthetase, central domain {Escherichia coli [ | 99.93 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 99.92 | |
| d1k9vf_ | 200 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.92 | |
| d1xnga1 | 255 | NH3-dependent NAD+-synthetase {Helicobacter pylori | 99.91 | |
| d2c5sa1 | 218 | Thiamine biosynthesis protein ThiI, C-terminal dom | 99.87 | |
| d2abwa1 | 218 | Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p | 99.86 | |
| d1wxia1 | 274 | NH3-dependent NAD+-synthetase {Escherichia coli [T | 99.85 | |
| d2ghra1 | 281 | Homoserine O-succinyltransferase HTS (MetA) {Bacil | 99.82 | |
| d1wy5a1 | 216 | TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId | 99.81 | |
| d1s1ma1 | 258 | CTP synthase PyrG, C-terminal domain {Escherichia | 99.8 | |
| d1vcoa1 | 250 | CTP synthase PyrG, C-terminal domain {Thermus ther | 99.8 | |
| d1kqpa_ | 271 | NH3-dependent NAD+-synthetase {Bacillus subtilis [ | 99.8 | |
| d1ni5a1 | 227 | tRNA-Ile-lysidine synthetase, TilS, N-terminal dom | 99.77 | |
| d1t3ta2 | 262 | FGAM synthase PurL, amidotransferase domain {Salmo | 99.58 | |
| d1k92a1 | 188 | Argininosuccinate synthetase, N-terminal domain {E | 99.53 | |
| d2pg3a1 | 230 | Queuosine biosynthesis protein QueC {Erwinia carot | 99.43 | |
| d1vl2a1 | 168 | Argininosuccinate synthetase, N-terminal domain {T | 99.39 | |
| d1j20a1 | 165 | Argininosuccinate synthetase, N-terminal domain {T | 99.35 | |
| d1vbka1 | 132 | Hypothetical protein PH1313, C-terminal domain {Ar | 99.33 | |
| d1sura_ | 215 | Phosphoadenylyl sulphate (PAPS) reductase {Escheri | 99.16 | |
| d1zuna1 | 211 | Sulfate adenylyltransferase subunit 2, CysD {Pseud | 99.15 | |
| d1jgta1 | 299 | beta-Lactam synthetase {Streptomyces clavuligerus | 97.99 | |
| d2d13a1 | 226 | Hypothetical protein PH1257 {Archaeon Pyrococcus h | 97.89 | |
| d1vhqa_ | 217 | Putative sigma cross-reacting protein 27A (SCRP-27 | 97.84 | |
| d1q15a1 | 296 | beta-Lactam synthetase {Pectobacterium carotovorum | 97.84 | |
| d1ct9a1 | 324 | Asparagine synthetase B, C-terminal domain {Escher | 97.67 | |
| d2fexa1 | 188 | Hypothetical protein Atu0886 {Agrobacterium tumefa | 97.54 | |
| d1oi4a1 | 170 | Hypothetical protein YhbO {Escherichia coli [TaxId | 97.44 | |
| d1g2ia_ | 166 | Intracellular protease {Archaeon Pyrococcus horiko | 97.36 | |
| d1u9ca_ | 221 | GK2698 ortholog {Bacillus stearothermophilus [TaxI | 97.28 | |
| d1p80a1 | 156 | Catalase, C-terminal domain {Escherichia coli, HPI | 97.22 | |
| d1sy7a1 | 184 | Catalase, C-terminal domain {Neurospora crassa [Ta | 97.14 | |
| d1p5fa_ | 186 | DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.02 | |
| d1qvwa_ | 236 | Hypothetical protein Ydr533Cp {Baker's yeast (Sacc | 96.79 | |
| d2ab0a1 | 195 | Protein ThiJ (YajL) {Escherichia coli [TaxId: 562] | 96.54 | |
| d1n57a_ | 279 | HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | 92.28 | |
| d1t0ba_ | 240 | GK2113 homologue {Bacillus stearothermophilus [Tax | 91.27 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 91.08 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 84.87 |
| >d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: GMP synthetase C-terminal dimerisation domain family: GMP synthetase C-terminal dimerisation domain domain: GMP synthetase C-terminal dimerisation domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-55 Score=369.95 Aligned_cols=121 Identities=56% Similarity=0.917 Sum_probs=120.4
Q ss_pred CCCccccccCCCCcchHHHHHhhhhHHHHHHHHHcCcccccccceeeecCcceeeecCCCceeeeEEEEEeeecCCCccc
Q 039743 410 GPGLAVRVLGDVTEGNSLDILRQVDEIFIQSIKEAGLYDLIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTA 489 (531)
Q Consensus 410 ~p~la~r~~g~vt~~~l~~~~~~~d~~~~~~l~~~~~~~~~~q~~~vllp~~~~gv~gd~r~~~~~~~lr~~~~~d~mt~ 489 (531)
|||||+|++|++|+|+| +++|+||++++++|++.|+|+++||+|++|+|+|||||+||.|+|+|+++||+|+|.|||||
T Consensus 1 GPGL~vRi~GevT~ekl-~ilReAD~Iv~~~L~~~gly~~iwQ~~~vllpv~svgv~gd~r~y~~~v~lR~V~S~D~MTA 79 (121)
T d1gpma3 1 GPGLGVRVLGEVKKEYC-DLLRRADAIFIEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTA 79 (121)
T ss_dssp TTGGGGTBCSSCCHHHH-HHHHHHHHHHHHHHHHTTCGGGSSEEEEEEEEEEEECCTTTCCSEEEEEEEEEEEEEETTEE
T ss_pred CCceeEEEcCcCCHHHH-HHHHHCCHHHHHHHHHcCCccccccceeeEeccccccccCCcccccceEEEEEEEccCCccc
Confidence 79999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHcCCCCcccEEEecCCCCCCCcccC
Q 039743 490 DWYYFEHKFLDDVARKICNTVRGVNRVVQDITSKPPSTIEWE 531 (531)
Q Consensus 490 ~~~~~~~~~l~~~~~~i~~~~~~v~rv~~d~~~k~p~~~~~~ 531 (531)
+|+++|+++|++|++||+|++||||||+||||||||||||||
T Consensus 80 ~~~~~p~~~L~~is~rI~~ev~~V~rV~yDiTsKPP~TiEwE 121 (121)
T d1gpma3 80 HWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEWE 121 (121)
T ss_dssp EECCCCHHHHHHHHHHHHHHSTTEEEEEEECCCBTTSCSSCC
T ss_pred cCccCCHHHHHHHHHHHHHcCCCccEEEEeCCCCCCCCcccC
Confidence 999999999999999999999999999999999999999999
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=3.8e-42 Score=324.49 Aligned_cols=191 Identities=25% Similarity=0.459 Sum_probs=173.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcE
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYV 84 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPv 84 (531)
|.||+|||||++|+++++|.|+++|++++++|++.+.+++ .++||||||||++++++.. .....+++++.+.++|+
T Consensus 1 m~ki~iiD~g~~~~~~i~r~l~~lg~~~~i~~~d~~~~~~--~~~dgiIl~Gg~~~~~~~~--~~~~~l~~~~~~~~~Pi 76 (196)
T d2a9va1 1 MLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSEL--DGLDGLVLSGGAPNIDEEL--DKLGSVGKYIDDHNYPI 76 (196)
T ss_dssp CCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGG--TTCSEEEEEEECSCGGGTG--GGHHHHHHHHHHCCSCE
T ss_pred CCEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCCHHHH--hcCCcEEEecccccccccc--chhhhHHHHHhhcCceE
Confidence 5789999999999999999999999999999998777665 6899999999998876542 22356778888889999
Q ss_pred EEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEEEE
Q 039743 85 LGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVAAV 164 (531)
Q Consensus 85 LGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ai 164 (531)
||||+|||+|+.++||++.+....+.++..+.+...+++|+++++. +.++++|++.+.++|++++++|.+++|+++|+
T Consensus 77 lGIC~G~Qll~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~H~~~v~~~~~~~~v~a~~~~~~v~ai 154 (196)
T d2a9va1 77 LGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSENIFGGLPSE--ITVWENHNDEIINLPDDFTLAASSATCQVQGF 154 (196)
T ss_dssp EEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEESCCCGGGTTCCSE--EEEEEEEEEEEESCCTTEEEEEECSSCSCSEE
T ss_pred EEeehhhhhhhhccccccccccccccccceEEEecCCccccCCCCc--eEEEecceeEEEeCCCccceeecccccchheE
Confidence 9999999999999999999998888899999888888999999988 99999999999999999999999999999999
Q ss_pred EECCCcEEEEecCCCCCCCcccchhhhhheeccccccc
Q 039743 165 ENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNA 202 (531)
Q Consensus 165 ~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~ 202 (531)
++.++++||+|||||+.+++.|.+||+||+ ++|+..+
T Consensus 155 ~~~~~~i~gvQfHPE~~~s~~G~~il~~F~-~~~~~~~ 191 (196)
T d2a9va1 155 YHKTRPIYATQFHPEVEHTQYGRDIFRNFI-GICASYR 191 (196)
T ss_dssp EESSSSEEEESSCTTSTTSTTHHHHHHHHH-HHHHHHH
T ss_pred EECCCCEEEEEeCcccCCCccHHHHHHHHH-HHHHHHH
Confidence 999889999999999999999999999998 8886443
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-39 Score=309.35 Aligned_cols=193 Identities=38% Similarity=0.679 Sum_probs=169.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.||+|||||++|+++|+|+||++|++++++|++.+.+++...++||++++|||+++.+.........+ .+.++|+|
T Consensus 6 ~kI~IiD~G~~~~~~I~r~lr~lg~~~~I~~~d~~~~~~~~~~~~giils~gp~~~~~~~~~~~~~~~----~~~~~PiL 81 (205)
T d1gpma2 6 HRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYV----FEAGVPVF 81 (205)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTCCCCCGGG----GTSSSCEE
T ss_pred CeEEEEECCchHHHHHHHHHHHCCCEEEEECCCCCHHHHhhcCCCeEEecCCCCccchhhhhhHHHHH----HhCCCCEE
Confidence 58999999999999999999999999999999988777767789999999999998777654444433 34599999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCC------ceEEEEeeccCccccCCCCcEEEEEeCCC
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVG------HHQVVWMSHGDEAVVLPDGFEVVARSQQG 159 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~------~~~~v~~~H~~~v~~lp~g~~vla~s~~~ 159 (531)
|||+|||+|+.++||++.+...+++|+..+.+.....++.+++.. ..+.++++|++.+..+|+++.+++.++++
T Consensus 82 GIClG~Qlla~~~Gg~v~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~ 161 (205)
T d1gpma2 82 GVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESC 161 (205)
T ss_dssp EETHHHHHHHHHHTCEEECCSSCEEEEEEEEECSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEECCTTCEEEEECSSC
T ss_pred EeccchhhhhhhcCCccccccccccCcceeccccccccccccccccccCCccceeeecccccccccccccceeeeccCCC
Confidence 999999999999999999999999999998887766665554321 22678999999999999999999999999
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccccccc
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCGVNA 202 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~~~~ 202 (531)
.++++++.++++||+|||||.++|+.|.+||+||+.++|+|+.
T Consensus 162 ~~~~~~~~~~ni~gvQFHPE~s~s~~G~~il~nFl~~i~~~~~ 204 (205)
T d1gpma2 162 PFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEA 204 (205)
T ss_dssp SCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHHTTSCCCC
T ss_pred ceEEEEeCCCCEEEEEeecccCCCccHHHHHHHHHHHHhCCcc
Confidence 9999999989999999999999999999999999999999874
|
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=9.5e-37 Score=287.08 Aligned_cols=188 Identities=19% Similarity=0.276 Sum_probs=157.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCc
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVY 83 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iP 83 (531)
|++|||||+.++|++++++.||++|+++++++.+. +.+++...++|||+++|||+++++.........+. .+.+.++|
T Consensus 1 ~~~~liiD~~dsft~Ni~~~l~~lG~~~~vi~~d~~~~~~i~~~~~~gvilsgGp~~~~~~~~~~~~~~i~-~~~~~~~P 79 (195)
T d1qdlb_ 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVI-KYLGKRTP 79 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHH-HHHTTTSC
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCeEEEEeCCCCCHHHHHhhCCCccccCCCCCccccccccccchhhh-hhhcCCCC
Confidence 57899999999999999999999999999999864 66666666899999999999987654333333333 44677999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEe---cCCccccCCCCCceEEEEeeccCccccCCCCcEEEEE-eCCC
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVE---RSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVAR-SQQG 159 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~---~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~-s~~~ 159 (531)
+||||+|||+|+.++||+|.+.+..+.|....... ....+|.++++. +.++++|++.+...|.++..++. ++++
T Consensus 80 iLGIClG~Qll~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~--~~~~~~h~~~~~~~~~~~~~~~~~~~~~ 157 (195)
T d1qdlb_ 80 ILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKE--FKATRYHSLVVDEVHRPLIVDAISAEDN 157 (195)
T ss_dssp EEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEEECCSSCCSTTTTCCSE--EEEEEEEEEEEECCCTTEEEEEEESSSC
T ss_pred EEEeehhhhhhhhccCCEEEeecccccccccccccccccccccccCCCcc--ceeeecceeeeeccccCcccceeccCCC
Confidence 99999999999999999999987777775543333 233689999888 99999999998888888877764 4678
Q ss_pred cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhee
Q 039743 160 AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLF 195 (531)
Q Consensus 160 ~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~ 195 (531)
.++|+++.++++||+|||||+++|+.|.+||+||+.
T Consensus 158 ~i~ai~~~~~~i~GvQFHPE~~~s~~G~~il~nFl~ 193 (195)
T d1qdlb_ 158 EIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLN 193 (195)
T ss_dssp CEEEEEESSSSEEEESSBTTSTTCTTHHHHHHHHHH
T ss_pred cEEEEEECCCCEEEEEcCCCCCCCcchHHHHHHHHh
Confidence 999999999999999999999999999999999983
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=1.6e-36 Score=284.69 Aligned_cols=181 Identities=23% Similarity=0.315 Sum_probs=159.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChh----ccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCC
Q 039743 7 LVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLD----DITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGV 82 (531)
Q Consensus 7 ~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~----~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~i 82 (531)
.|+|||..++|++.+++.|+++|.+++++|.+.+.+ ++...++|+|++||||+++.+.. ....++.+.+.++
T Consensus 2 niliiD~~DSFt~ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~~----~~~~i~~~l~~~i 77 (192)
T d1i7qb_ 2 DILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAG----CMPELLQRLRGQL 77 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGGST----THHHHHHHHBTTB
T ss_pred cEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCccccccccc----cchhhHHhhhcCc
Confidence 599999999999999999999999999999876643 34356889999999999876543 2334556677899
Q ss_pred cEEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCCCcEE
Q 039743 83 YVLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQGAVA 162 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~~~v~ 162 (531)
|+||||+|||+|+.++||+|.+...+++|+.......++.+|.+.+.. +.++++|++.+..+|+++.++|.+++ .++
T Consensus 78 PiLGIClG~Q~la~~~Gg~v~~~~~~~~g~~~~~~~~~~~l~~~~~~~--~~~~~~h~~~~~~~~~~~~~~a~~~~-~i~ 154 (192)
T d1i7qb_ 78 PIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAGMANP--LPVARYHSLVGSNIPADLTVNARFGE-MVM 154 (192)
T ss_dssp CEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEEECCCGGGTTCCSS--EEEEEEEEEEEESCCTTSEEEEEETT-EEE
T ss_pred cEEeeeHHHHHHHHHCCCeEEECCcccccceEEEeecCCCceeecccc--ceEEeecccccccccceeeeecCCCC-eeE
Confidence 999999999999999999999998889999887777778899999888 99999999999999999999998765 589
Q ss_pred EEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 163 AVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|+++.++++||+|||||+.+|+.|.+||+||+
T Consensus 155 ai~~~~~~i~GvQFHPEs~~t~~G~~il~nFl 186 (192)
T d1i7qb_ 155 AVRDDRRRVCGFQFHPESILTTHGARLLEQTL 186 (192)
T ss_dssp EEEETTTTEEEESSCTTSTTSTTHHHHHHHHH
T ss_pred EEEECCCCEEEEEeCCCcCCCCChHHHHHHHH
Confidence 99999999999999999999999999999998
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-36 Score=291.76 Aligned_cols=179 Identities=21% Similarity=0.326 Sum_probs=148.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEE
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVL 85 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvL 85 (531)
.+|+|+|||+||+ +.|+|+++|++++++|++.+.+++...+||||||||||+++.+.. ...++++.+.+.++|||
T Consensus 40 ~~i~~~D~G~k~~--ilr~l~~~~~~~~v~p~~~~~~~i~~~~pdgivlS~GPg~P~~~~---~~~~~~~~~~~~~iPIL 114 (228)
T d1a9xb2 40 FHVVAYDFGAKRN--ILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCD---YAITAIQKFLETDIPVF 114 (228)
T ss_dssp EEEEEEESSCCHH--HHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTCH---HHHHHHHHHTTSCCCEE
T ss_pred ceEEEEeCCCcHH--hHhHHHhcCceEEEcCCCCCHHHHHhcCCCEEEEeCCCCccccch---hHHHHHHHHHhCCCCEE
Confidence 3699999999998 569999999999999999999998888999999999999876542 13456666677899999
Q ss_pred EeeHHHHHHHHHcCCEEeecCcccceeeeEEEecCCccccCCCCCceEEEEeeccCcc--ccCCCCcEEEEEe-CCCcEE
Q 039743 86 GICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEA--VVLPDGFEVVARS-QQGAVA 162 (531)
Q Consensus 86 GIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v--~~lp~g~~vla~s-~~~~v~ 162 (531)
|||||||+|+.++||+|.+...+++|............+ +...++|++.+ .+++..+.+++.+ +|+.++
T Consensus 115 GIClG~Qlia~~~Gg~v~k~~~~~~G~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~~i~ 186 (228)
T d1a9xb2 115 GICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVV--------MITAQNHGFAVDEATLPANLRVTHKSLFDGTLQ 186 (228)
T ss_dssp EETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTTTEE--------EEEEEEEEEEECSTTCCTTEEEEEEETTTCCEE
T ss_pred EEEcChHHHHHHcCCceeeccccccccccccccccccee--------eeecccccceecccccccceEEEEEecCCCcEE
Confidence 999999999999999999999999998776554333222 34445555444 4678888888877 678999
Q ss_pred EEEECCCcEEEEecCCCCCCCcc-cchhhhhheeccc
Q 039743 163 AVENREKRLFGLQYHPEVTHSPE-GMETLRYFLFDVC 198 (531)
Q Consensus 163 ai~~~~~~i~gvQFHPE~~~~~~-g~~i~~~F~~~~~ 198 (531)
|++|.+.++||+|||||+.+++. |..||+||+ +.|
T Consensus 187 ai~h~~~~i~gVQFHPE~~~t~~dg~~l~~nFl-~~i 222 (228)
T d1a9xb2 187 GIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFI-ELI 222 (228)
T ss_dssp EEEESSSSEEEESSCTTCSSSCSTTTHHHHHHH-HHH
T ss_pred EEEECCCCEEEEeCCCCCCCCcccHHHHHHHHH-HHH
Confidence 99999999999999999999875 999999998 544
|
| >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein TM1158 species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=4.4e-30 Score=247.07 Aligned_cols=178 Identities=21% Similarity=0.255 Sum_probs=145.3
Q ss_pred CEEEEEeCC-CCcHHHHHHHHHHCCCEEEEEeCCCChhcc--ccCCCCEEEEcCCCCCCCCCCC-CCCh--HHHHHHHHh
Q 039743 6 ELVLILDYG-SQYTHLITRRIRSLSILSLCLSGTCSLDDI--TAKNPRVVILSGGPHSVHSPDA-PAFP--AGFLEWALS 79 (531)
Q Consensus 6 ~~I~IlD~G-~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~--~~~~~dgiIlsGGp~s~~~~~~-~~~~--~~l~~~~~~ 79 (531)
+||+||-.. .....++.++|++.|..++++..... +.+ ...++||||++|||.+++++.. +|+. .++++.+.+
T Consensus 4 mrvli~qh~~~e~~G~~~~~l~~~g~~~~~~~~~~~-~~~p~~l~~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~ 82 (230)
T d1o1ya_ 4 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKG-EKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILK 82 (230)
T ss_dssp CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGT-CCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCcHHHHHHHHHCCCEEEEEECCCC-CcCCcchhhCCEEEEcCCCcccccchhhhhhHHHHHHHHHHHH
Confidence 579999221 11234689999999999998754321 111 1357899999999999998754 5554 367778888
Q ss_pred CCCcEEEeeHHHHHHHHHcCCEEeecCc-ccceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEEeCC
Q 039743 80 NGVYVLGICYGLQLMVQKLDGVVKVGEK-QEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVARSQQ 158 (531)
Q Consensus 80 ~~iPvLGIC~G~Qlla~~~GG~v~~~~~-~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~s~~ 158 (531)
.++|+||||+|||+|+.++||+|.+++. ++.|...+....++++|.++++. +.++++|+| +.++|++++++|+++.
T Consensus 83 ~~~PilGIC~G~Qlla~alGg~V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~H~d-~~~lp~~~~~la~s~~ 159 (230)
T d1o1ya_ 83 KEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVSDNKFFREFPDR--LRVFQWHGD-TFDLPRRATRVFTSEK 159 (230)
T ss_dssp HTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEEEEEECCCCGGGTTSCSE--EEEEEEESE-EECCCTTCEEEEECSS
T ss_pred hcceEEEeecCHHHHHHHhccccccccccccccccccccccchhhhccCCcc--ceEEEecce-eeeeccchhhhhhhcC
Confidence 8999999999999999999999999764 57788888888888999999988 999999998 5789999999999999
Q ss_pred CcEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 159 GAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 159 ~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
|.++|++. +++||+|||||++. .++++|+
T Consensus 160 ~~~qa~~~--~~~~g~QfHPE~~~-----~~~~~~i 188 (230)
T d1o1ya_ 160 YENQGFVY--GKAVGLQFHIEVGA-----RTMKRWI 188 (230)
T ss_dssp CSCSEEEE--TTEEEESSBSSCCH-----HHHHHHH
T ss_pred CceEEEEe--cCEeEEEeCCCCCH-----HHHHHHH
Confidence 99999986 47999999999876 4788886
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.5e-27 Score=237.14 Aligned_cols=213 Identities=19% Similarity=0.267 Sum_probs=146.3
Q ss_pred CEEEEEe----------CCCCc-HHHHHHHHHHCCCEEEEEeCCCChhccc--cCCCCEEEEcCCCCCCCCCCCCCChHH
Q 039743 6 ELVLILD----------YGSQY-THLITRRIRSLSILSLCLSGTCSLDDIT--AKNPRVVILSGGPHSVHSPDAPAFPAG 72 (531)
Q Consensus 6 ~~I~IlD----------~G~~~-~~~i~r~l~~~G~~~~v~~~~~~~~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~ 72 (531)
+.|+|+- ++.+| ..+++++++++|+.+.++|++.+.+++. ..+.||||||||+.++.........+.
T Consensus 4 PiIGI~~~~~~~~~~~~~~~~yi~~sYvk~ie~aGa~vvpi~~~~~~~~~~~~l~~idGillpGG~~~~~~~~~~~~~r~ 83 (288)
T d1l9xa_ 4 PIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKI 83 (288)
T ss_dssp CEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHH
T ss_pred CEEEEeCCcccCcccccchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHhhcCCeEecCCCCCcccccccccchH
Confidence 6688871 23344 5689999999999999999988776643 457899999999876543321111233
Q ss_pred HHHH-----HHhCCCcEEEeeHHHHHHHHHcCCEEeecCcccceee-eEEEec---CCccccCCCCC------ceEEEEe
Q 039743 73 FLEW-----ALSNGVYVLGICYGLQLMVQKLDGVVKVGEKQEYGRM-EILVER---SSGIFGNKKVG------HHQVVWM 137 (531)
Q Consensus 73 l~~~-----~~~~~iPvLGIC~G~Qlla~~~GG~v~~~~~~e~G~~-~v~~~~---~~~l~~~~~~~------~~~~v~~ 137 (531)
+++. +.++++||||||+|||+|+.++||++.+......+.. .+.... .+.++...+.. ....+++
T Consensus 84 ~~~~~l~~~~~~~~~PilGIC~G~Qll~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (288)
T d1l9xa_ 84 FYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTAN 163 (288)
T ss_dssp HHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEEEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHHHhhCCCCeEEEcHHHHHHHHHhCCEeeccccCcCCcceeEEecCCCccceeEeecccchhhhccCCceEEE
Confidence 3333 3345689999999999999999999877644444422 233332 23455554421 0135888
Q ss_pred eccCccc--------cCCCCcEEEEEeCCCc---EEEEEECCCcEEEEecCCCC-----------CCCcccchh---hhh
Q 039743 138 SHGDEAV--------VLPDGFEVVARSQQGA---VAAVENREKRLFGLQYHPEV-----------THSPEGMET---LRY 192 (531)
Q Consensus 138 ~H~~~v~--------~lp~g~~vla~s~~~~---v~ai~~~~~~i~gvQFHPE~-----------~~~~~g~~i---~~~ 192 (531)
+|+++|. .++++++++|++.|+. |+++++.+.++||+|||||+ .|+..+.++ |.|
T Consensus 164 ~H~~~v~~~~~~~~~~l~~~~~v~a~s~d~~~e~I~~ie~~~~pi~GvQfHPEk~~fE~~~~~~~~H~~~~~~~~~~~~~ 243 (288)
T d1l9xa_ 164 FHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAE 243 (288)
T ss_dssp EEEEECBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHH
T ss_pred ecccEEEecccchhhhcCCceEEEEEECCCCeEEEEEEEcCCCcEEEEEcCCCCCCcccccCCCCCCCHHHHHHHHHHHH
Confidence 9999983 6789999999998875 55567788899999999993 465555555 999
Q ss_pred heeccccccccccccchhhhhhhhhhc
Q 039743 193 FLFDVCGVNAGWKLENVLDEEVKCIKD 219 (531)
Q Consensus 193 F~~~~~~~~~~w~~~~~~~~~~~~i~~ 219 (531)
|++++|+.+. |+..+..++....|..
T Consensus 244 ffv~~~rkn~-~~f~~~~~~~~~lI~n 269 (288)
T d1l9xa_ 244 FFVNEARKNN-HHFKSESEEEKALIYQ 269 (288)
T ss_dssp HHHHHHTTSC-CCCSSHHHHHHHSGGG
T ss_pred HHHHHHHhcc-CCCCCHHHHHHHhhcC
Confidence 9889998654 5555544444444444
|
| >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=1.2e-26 Score=216.69 Aligned_cols=174 Identities=18% Similarity=0.243 Sum_probs=113.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCCC--CCChHHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDA--PAFPAGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~--~~~~~~l~~~~~~~~iP 83 (531)
+||+|||||+||+++++|+++++|++++++... +++ .++|++|||||+++...... ..-...++......++|
T Consensus 1 Mki~IiD~G~gN~~si~~~l~~lg~~~~i~~~~---~~i--~~~d~lIlpG~g~~~~~~~~~~~~~~~~~~~~~~~~g~p 75 (195)
T d1ka9h_ 1 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP---KAH--EEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLP 75 (195)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST---TSC--SSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCC
T ss_pred CEEEEEeCCCcHHHHHHHHHHHCCCeEEEECCH---HHH--HHHhhhhcCCCccccchhhhccccCCcccccccccccch
Confidence 479999999999999999999999999997532 233 56799999999873211111 11123455566677999
Q ss_pred EEEeeHHHHHHHHHcC------------CEEeecCcc---cceeeeEEEecCCccccCCCCCceEEEEeeccCccccCCC
Q 039743 84 VLGICYGLQLMVQKLD------------GVVKVGEKQ---EYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPD 148 (531)
Q Consensus 84 vLGIC~G~Qlla~~~G------------G~v~~~~~~---e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~ 148 (531)
+||||+|||+|+.... +++...... +.++...... ....... . ...++.|++.+.. ++
T Consensus 76 ilGiClG~qll~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~--~~~~~~~~~~~~~-~~ 148 (195)
T d1ka9h_ 76 FLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEFG---GAFAPLT-G--RHFYFANSYYGPL-TP 148 (195)
T ss_dssp EEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEECEEC---GGGGGGT-T--CEEEEEESEECCC-CT
T ss_pred hhhhhhhhheeeeccccccccCCceeeecccccccccccccccccccccc---ccccccc-c--cccccccceeeec-cc
Confidence 9999999999986421 122222111 1222222211 1112222 2 4677788877544 33
Q ss_pred CcEEEEEeCCCc-EEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 149 GFEVVARSQQGA-VAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 149 g~~vla~s~~~~-v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
.....+...+.. +++++ ++++||+|||||+++ ..|.+||+||+
T Consensus 149 ~~~~~~~~~~~~~~a~v~--~~ni~GvQFHPEkS~-~~G~~lL~nF~ 192 (195)
T d1ka9h_ 149 YSLGKGEYEGTPFTALLA--KENLLAPQFHPEKSG-KAGLAFLALAR 192 (195)
T ss_dssp TCCEEEEETTEEEEEEEE--CSSEEEESSCTTSSH-HHHHHHHHHHH
T ss_pred cceeeeecCCceEEEEEE--cCCEEEEeCCccccc-HhHHHHHHHHH
Confidence 444444444444 45555 358999999999997 78999999997
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=3.1e-27 Score=221.54 Aligned_cols=178 Identities=13% Similarity=0.142 Sum_probs=123.3
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHHHHhCCC
Q 039743 5 PELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEWALSNGV 82 (531)
Q Consensus 5 ~~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~~~~~~i 82 (531)
|++|+|||+.+ +.++..++|+++|+++.++.. .+++ .++|+||||||++++.... ... ..+.++.+.++++
T Consensus 1 m~~igv~~~~G-~~~~~~~al~~~G~~~~~i~~---~~~l--~~~D~lIlPGG~~~~~~~~~~~~~-~~~~I~~~~~~g~ 73 (195)
T d2nv0a1 1 MLTIGVLGLQG-AVREHIHAIEACGAAGLVVKR---PEQL--NEVDGLILPGGESTTMRRLIDTYQ-FMEPLREFAAQGK 73 (195)
T ss_dssp CCEEEEECSSS-CCHHHHHHHHHTTCEEEEECS---GGGG--GGCSEEEECCSCHHHHHHHHHHTT-CHHHHHHHHHTTC
T ss_pred CcEEEEEecCC-hHHHHHHHHHHCCCcEEEECC---HHHH--hhCCEEEECCCCccHHHHHhhhch-hcchhhhhhhhcc
Confidence 67899999953 335678999999999998843 2333 5689999999876432110 011 1345666778899
Q ss_pred cEEEeeHHHHHHHHHcCCEEeecC-cccceeee------EEEecCCccccCCCCCceEEEEeeccCccccCCCCcEEEEE
Q 039743 83 YVLGICYGLQLMVQKLDGVVKVGE-KQEYGRME------ILVERSSGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEVVAR 155 (531)
Q Consensus 83 PvLGIC~G~Qlla~~~GG~v~~~~-~~e~G~~~------v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~vla~ 155 (531)
|+||||+|||+|++.++|...+.. ..+..... +........+++++.. +.+++.|++.+..+|++++++|.
T Consensus 74 pilGIC~G~Qll~~~~~g~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~~~~~~~~~~vla~ 151 (195)
T d2nv0a1 74 PMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEP--FTGVFIRAPHILEAGENVEVLSE 151 (195)
T ss_dssp CEEEETHHHHHHSBCCC----CCCCCSCEEEECCCSCTTTSEEEEEECCTTCSSC--EEEEEESCCEEEEECTTCEEEEE
T ss_pred eeeeccccHHHHHhhhcccccccccccccccccccccccceeeeeeecccCCCCC--ceEEEEeeeEEEecCCCceeeee
Confidence 999999999999998877543321 11111100 1111122467777777 89999999999999999999998
Q ss_pred eCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 156 SQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 156 s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
+++.++ |++. +++||+|||||++++ .+++++|+ +.|
T Consensus 152 ~~~~~~-a~~~--~ni~g~QFHPE~s~~---~~~~~~F~-~~~ 187 (195)
T d2nv0a1 152 HNGRIV-AAKQ--GQFLGCSFHPELTED---HRVTQLFV-EMV 187 (195)
T ss_dssp ETTEEE-EEEE--TTEEEESSCTTSSSC---CHHHHHHH-HHH
T ss_pred ECCEEE-EEEE--CCEEEEEeCCcccCC---cHHHHHHH-HHH
Confidence 877655 6664 689999999999874 45778886 544
|
| >d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: GMP synthetase, central domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=5.2e-26 Score=211.39 Aligned_cols=197 Identities=56% Similarity=0.932 Sum_probs=128.0
Q ss_pred ccccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 204 WKLENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 204 w~~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
|+|++++++.++.||++++ +++++||+||||||+|+|++++++.|..+.+++++++.....+..+..+.+|+.+++++.
T Consensus 1 ~~~~~~i~~~~~~ik~~v~-~~kvvV~lSGGVDSsv~a~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 79 (197)
T d1gpma1 1 WTPAKIIDDAVARIREQVG-DDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIV 79 (197)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEE
T ss_pred CCHHHHHHHHHHHHHHHhC-CCcEEEEcCCCHHHHHHHHHHHHhcCceeeeeecccccccccchHHHHHHHHHhcCcccc
Confidence 9999999999999999998 789999999999999999999999899999999998887776666666668999999999
Q ss_pred EEECchHHHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccc
Q 039743 284 CVDATDQFLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSH 363 (531)
Q Consensus 284 vvd~~~~f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~ 363 (531)
++++...+........+........+............... .......++...+........+. .....+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 151 (197)
T d1gpma1 80 HVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLE-----DVKWLAQGTIYPDVIESAASATG---KAHVIKSH 151 (197)
T ss_dssp EEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHSS-----SEEEEECCCCHHHHHHTTC---------------
T ss_pred cccHHHHHhhhhhhhhhhhhhcccccchhhHHHHHHHHHhh-----hhHHHHhhhhhhhcccccccccc---cccccccc
Confidence 99998877666544333221222222222222222222221 02222233322222111111110 02233344
Q ss_pred cccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 364 HNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 364 ~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
...+.......+++++||.+++|+|||++|+++|||.++++|+|||
T Consensus 152 ~~~~~~~~~~~~~li~PL~~l~K~eV~~lA~~lglP~~i~~~~p~~ 197 (197)
T d1gpma1 152 HNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFP 197 (197)
T ss_dssp ----------CCEEECTTTTCCHHHHHHHHHHTTCCHHHHTSCCCC
T ss_pred cccchhhhhhcCceehhccCCcHHHHHHHHHHcCCCHHHhCCCCCC
Confidence 4444455555778999999999999999999999999999999998
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.92 E-value=1.2e-26 Score=218.79 Aligned_cols=174 Identities=21% Similarity=0.321 Sum_probs=126.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChhccccCCCCEEEEcCCCCCCCCCC--CCCChHHHHHHHHhCCCc
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLDDITAKNPRVVILSGGPHSVHSPD--APAFPAGFLEWALSNGVY 83 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~--~~~~~~~l~~~~~~~~iP 83 (531)
+||+||||+++ .++++++|+++|++++++.. .+++ .++||||||||+.+..... ...+ .+.++.+.++++|
T Consensus 7 mkIgii~~~Gn-~~s~~~al~~~G~~~~~v~~---~~~l--~~~D~lIlPGG~~~~~~~~l~~~~l-~~~I~~~~~~gkP 79 (202)
T d1q7ra_ 7 MKIGVLGLQGA-VREHVRAIEACGAEAVIVKK---SEQL--EGLDGLVLPGGESTTMRRLIDRYGL-MEPLKQFAAAGKP 79 (202)
T ss_dssp CEEEEESCGGG-CHHHHHHHHHTTCEEEEECS---GGGG--TTCSEEEECCCCHHHHHHHHHHTTC-HHHHHHHHHTTCC
T ss_pred CEEEEEECCCC-HHHHHHHHHHCCCcEEEECC---HHHH--hcCCEEEECCCCcHHHHHHhhhhHH-HHHHhhhccccce
Confidence 68999999644 47889999999999998853 3344 6789999999876432211 0111 2456677788999
Q ss_pred EEEeeHHHHHHHHHcCCEEeecCcccceeeeEEEecC-----------CccccCCCCCceEEEEeeccCccccCCCCcEE
Q 039743 84 VLGICYGLQLMVQKLDGVVKVGEKQEYGRMEILVERS-----------SGIFGNKKVGHHQVVWMSHGDEAVVLPDGFEV 152 (531)
Q Consensus 84 vLGIC~G~Qlla~~~GG~v~~~~~~e~G~~~v~~~~~-----------~~l~~~~~~~~~~~v~~~H~~~v~~lp~g~~v 152 (531)
+||||+|||+|+...++. ...+.|+..+.+... ...+.+++.. ...++.|++.+..+|+++++
T Consensus 80 iLGIClG~Qll~~~~~~~----~~~~lg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (202)
T d1q7ra_ 80 MFGTCAGLILLAKRIVGY----DEPHLGLMDITVERNSFGRQRESFEAELSIKGVGDG--FVGVFIRAPHIVEAGDGVDV 153 (202)
T ss_dssp EEEETTHHHHHEEEEESS----CCCCCCCEEEEEECHHHHCCCCCEEEEEEETTTEEE--EEEEESSCCEEEEECTTCEE
T ss_pred eeeeehhhHHhhhhcccc----ceeecccccccccccccccccccceeccccccccCC--cceEEEeeccccccccceeE
Confidence 999999999998765442 234455555554321 1233444444 67888899999999999999
Q ss_pred EEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhhhheecccc
Q 039743 153 VARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVCG 199 (531)
Q Consensus 153 la~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~~ 199 (531)
+|++++. ++|++. +++||+|||||+++ |.++++||+ +.|+
T Consensus 154 ~a~~~~~-~~a~~~--gni~G~QFHPEkS~---~~~il~~Fl-~~~~ 193 (202)
T d1q7ra_ 154 LATYNDR-IVAARQ--GQFLGCSFHPELTD---DHRLMQYFL-NMVK 193 (202)
T ss_dssp EEEETTE-EEEEEE--TTEEEESSCGGGSS---CCHHHHHHH-HHHH
T ss_pred EeecCCE-EEEEEe--CCEEEEEeCCccCC---ChHHHHHHH-HHHH
Confidence 9988765 456653 68999999999975 578999998 6664
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=3.8e-27 Score=221.78 Aligned_cols=177 Identities=18% Similarity=0.222 Sum_probs=106.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCC-ChhccccCCCCEEEEcCCCC--CCCCC-CCCCChHHHHHHHHhCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTC-SLDDITAKNPRVVILSGGPH--SVHSP-DAPAFPAGFLEWALSNG 81 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~-~~~~~~~~~~dgiIlsGGp~--s~~~~-~~~~~~~~l~~~~~~~~ 81 (531)
+||+|||||+++.+++.++++++|..+..+.... +.++ ..++|+|||||..+ +..+. ....+. +.++.+.+++
T Consensus 1 MKI~IiDyg~gN~~si~~al~~~g~~~~~~~~~~~~~~~--~~~~D~lIlPG~G~f~~~~~~l~~~~~~-~~i~~~~~~~ 77 (200)
T d1k9vf_ 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPR--NDLYDLLFIPGVGHFGEGMRRLRENDLI-DFVRKHVEDE 77 (200)
T ss_dssp CEEEEECSSSSCCHHHHHHHHHHTTTSSSCEEEEESSSC--SCCCSEEEECCCSCHHHHHHHHHHTTCH-HHHHHHHHTT
T ss_pred CEEEEEeCCCcHHHHHHHHHHHhccccccceEEEeCChH--hhccCeEEEcChHHHHHHHHhhhccccc-cccccccccc
Confidence 4799999999999999999999886432221110 1111 24689999988322 10000 001222 3445556779
Q ss_pred CcEEEeeHHHHHHHHHcCCE------------Eeec---CcccceeeeEEEecCCccccCCCCCceEEEEeeccCccccC
Q 039743 82 VYVLGICYGLQLMVQKLDGV------------VKVG---EKQEYGRMEILVERSSGIFGNKKVGHHQVVWMSHGDEAVVL 146 (531)
Q Consensus 82 iPvLGIC~G~Qlla~~~GG~------------v~~~---~~~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~l 146 (531)
+||||||+|||+|+...++. +... ..++.+|..... ...... ..+++.|++.+...
T Consensus 78 ~PiLGIClG~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~hs~~~~~~ 148 (200)
T d1k9vf_ 78 RYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIF-------KDTFPN--GYYYFVHTYRAVCE 148 (200)
T ss_dssp CEEEEETHHHHTTEEEETTSTTCCCCCCEEEEEEECSCSSCSEEEEEEEEE-------SSSSCC--EEEEEEESEEEEEC
T ss_pred ceEEEEecceeEEeeecccCccccccccccccccccccccccccccccccc-------cccCCc--eEEEEeeeeeeccc
Confidence 99999999999999754221 1111 112233332221 112223 57888999876433
Q ss_pred CCCcEEEEEeCCCcEE-EEEECCCcEEEEecCCCCCCCcccchhhhhheeccc
Q 039743 147 PDGFEVVARSQQGAVA-AVENREKRLFGLQYHPEVTHSPEGMETLRYFLFDVC 198 (531)
Q Consensus 147 p~g~~vla~s~~~~v~-ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~~~~~ 198 (531)
++.....+...+..+. ++++ +++||+|||||+++ +.|.+||+||+ +++
T Consensus 149 ~~~~~~~~~~~~~~~~a~v~~--~ni~GvQFHPEkS~-~~G~~ll~nFl-~~~ 197 (200)
T d1k9vf_ 149 EEHVLGTTEYDGEIFPSAVRK--GRILGFQFHPEKSS-KIGRKLLEKVI-ECS 197 (200)
T ss_dssp GGGEEEEEEETTEEEEEEEEE--TTEEEESSBGGGSH-HHHHHHHHHHH-HHH
T ss_pred ccceEEEEEECCeEEEEEEEc--CCEEEEeCCCcccc-hhHHHHHHHHH-hhh
Confidence 3333333333444544 5553 58999999999886 78999999998 543
|
| >d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: NH3-dependent NAD+-synthetase species: Helicobacter pylori [TaxId: 210]
Probab=99.91 E-value=1.4e-24 Score=211.47 Aligned_cols=199 Identities=21% Similarity=0.309 Sum_probs=142.9
Q ss_pred cchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEE
Q 039743 207 ENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTC 284 (531)
Q Consensus 207 ~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~v 284 (531)
+.+++.+.+.|++++.+ .++|+||+||||||+|+|+|++++++.+++|++++++..++++.+.+.. +|+.||+++..
T Consensus 4 ~~~~~~l~~~l~~~~~~~G~k~vvvglSGGVDSsv~A~L~~~a~~~~v~~v~mp~~~~~~~~~~~A~~-la~~lgi~~~~ 82 (255)
T d1xnga1 4 QKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALN-LCEKFSIPYTE 82 (255)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHH-HHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhhhhcchhcCcchhcchhhHHHHHH-HHHHhhhcchh
Confidence 44566777777777632 4789999999999999999999998899999999999988888888876 89999999998
Q ss_pred EECchH---HHHhhcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccc
Q 039743 285 VDATDQ---FLSKLKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIK 361 (531)
Q Consensus 285 vd~~~~---f~~~l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ik 361 (531)
++.... |.+.+... +...+.++..+.+..++...+.+.+ .++.||. +..|+. .|+ .
T Consensus 83 i~~~~~~~~~~~~~~~~-~~~~~~n~~ar~r~~~l~~~a~~~~--------~~v~gt~--n~~e~~--~g~--------~ 141 (255)
T d1xnga1 83 YSIAPYDAIFSSHFKDA-SLTRKGNFCARLRMAFLYDYSLKSD--------SLVIGTS--NKSERM--LGY--------G 141 (255)
T ss_dssp CCCHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHHHHHHHHT--------CEEBCCC--CHHHHH--HTC--------S
T ss_pred hhhHHHHhhhhhhccch-hhhhHHHHHHHHhHHHHHHHHhhcC--------CccCCCc--cHHHHh--ccc--------c
Confidence 887532 22222221 1111222333333334455555443 5677773 222321 222 3
Q ss_pred cccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCCCCcchHHHHHhhhhHHHHH
Q 039743 362 SHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGDVTEGNSLDILRQVDEIFIQ 439 (531)
Q Consensus 362 t~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~vt~~~l~~~~~~~d~~~~~ 439 (531)
|+++.+. ..+.||.+|+|+|||++|+++|+|++++.++|+|+ | .+|+.+++.|+-.++..|.++..
T Consensus 142 t~~gd~~-------~~l~Pl~dL~K~eVr~LA~~lglP~~i~~k~ps~~--L---~~~q~de~~lg~~Y~~lD~~l~~ 207 (255)
T d1xnga1 142 TLFGDLA-------CAINPIGELFKTEVYELARRLNIPKKILNKPPSAD--L---FVGQSDEKDLGYPYSVIDPLLKD 207 (255)
T ss_dssp CTTTTTC-------CSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCCC--S---STTCCHHHHHSSCHHHHHHHHHH
T ss_pred chhhhhc-------cchhhhcCcCHHHHHHHHHHcCCchhhhcCCCCcc--c---ccccCcHhhhCCChHHHHHHHHH
Confidence 4444432 38999999999999999999999999999988876 3 36999999995589999988654
|
| >d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: ThiI-like domain: Thiamine biosynthesis protein ThiI, C-terminal domain species: Bacillus anthracis [TaxId: 1392]
Probab=99.87 E-value=4.7e-23 Score=195.54 Aligned_cols=185 Identities=18% Similarity=0.272 Sum_probs=117.8
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCCh-hHHHHHHHHHHHhCCC-----cEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRY-KERERVMDTFEKDLHL-----PVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~-~e~~~~~~~la~~lgi-----~~~vvd~~~~f~~~ 294 (531)
|+..+|++||||||+||+|+|+++++. |.+++++|+|+|+... .+.+.+.+ +++.+++ +...++..+.+ ..
T Consensus 1 ~~~~gKvvv~~SGG~DS~vla~ll~k~-g~~v~av~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~-~~ 77 (218)
T d2c5sa1 1 VGVGGKVMVLLSGGIDSPVAAYLTMKR-GVSVEAVHFHSPPFTSERAKQKVID-LAQELTKYCKRVTLHLVPFTEVQ-KT 77 (218)
T ss_dssp TTTTEEEEEECCSSSHHHHHHHHHHHB-TEEEEEEEEECTTTSCHHHHHHHHH-HHHHHGGGSSCEEEEEEECHHHH-HH
T ss_pred CCCCCEEEEEecCcHHHHHHHHHHHHc-CCeEEEEEEeCCCccchHHHHHHHh-hhccccccccccceEEeecchhh-hh
Confidence 456789999999999999999999986 9999999999997644 44444443 6665544 34444444332 22
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMK 374 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~ 374 (531)
+.....+...+..|.+.++..+...|++.+ ++.+++||+.+|..++. . .++........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~------~~~i~~G~~~~d~~~~~----~-----------~~l~~~~~~~~ 136 (218)
T d2c5sa1 78 INKEIPSSYSMTVMRRMMMRITERIAEERN------ALAITTGESLGQVASQT----L-----------DSMHTINEVTN 136 (218)
T ss_dssp HHHHSCGGGHHHHHHHHHHHHHHHHHHHTT------CCEEECCCCSSSTTSCC----H-----------HHHHHHGGGCC
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhc------cceEEeeeecCcchhhh----H-----------HHHhccchhch
Confidence 221122333343444556788889999888 89999999999987631 1 11111222345
Q ss_pred cceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCcccccc-CCCCcchHHHHHhhh
Q 039743 375 LKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVL-GDVTEGNSLDILRQV 433 (531)
Q Consensus 375 ~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~-g~vt~~~l~~~~~~~ 433 (531)
+++++||.+++|+||+++|+++|+|. ....|.+. |...+.+ ..++.+++ +.+++.
T Consensus 137 ~~iirPll~~~K~eI~~~a~~~gi~~--~~~~~~~~-~~~~~~~~~~~~~~~~-~~i~~~ 192 (218)
T d2c5sa1 137 YPVIRPLITMDKLEIIKIAEEIGTYD--ISIRPYED-CCTVFTPASPATKPKR-EKANRF 192 (218)
T ss_dssp SCEECTTTTCCHHHHHHHHHHTTCHH--HHTSCC---------------CCCH-HHHHHH
T ss_pred hhHHHhhhcCCHHHHHHHHHHcCCcc--ccccCCcc-cccccCCCCCcchhHH-HHHHHH
Confidence 67999999999999999999999985 33444344 4444443 55677666 554443
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.86 E-value=7e-23 Score=194.66 Aligned_cols=176 Identities=16% Similarity=0.221 Sum_probs=109.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEE-EEEeCCCChhccccCCCCEEEEcCCCCCCCCCCCC----CChHHHHHHHHhC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILS-LCLSGTCSLDDITAKNPRVVILSGGPHSVHSPDAP----AFPAGFLEWALSN 80 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~-~v~~~~~~~~~~~~~~~dgiIlsGGp~s~~~~~~~----~~~~~l~~~~~~~ 80 (531)
.||+|||+.+.+ ++..++++++|.+. ++... .+.+++ .++||||||||++........ .+...+++.+...
T Consensus 3 ikIGvl~l~G~~-~~~~~al~~lg~~~~~v~~~-~~~~~l--~~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (218)
T d2abwa1 3 ITIGVLSLQGDF-EPHINHFIKLQIPSLNIIQV-RNVHDL--GLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVL 78 (218)
T ss_dssp EEEEEECTTSCC-HHHHHHHHTTCCTTEEEEEE-CSHHHH--HTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTS
T ss_pred CEEEEEeCCCcH-HHHHHHHHHcCCCceEEEEe-CCHHHH--hhCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHc
Confidence 479999995555 45689999999643 33322 344554 578999999987643221110 1112455666678
Q ss_pred CCcEEEeeHHHHHHHHHcCCEEeecCc---------------------ccceeeeEEEecCCccccCCCCCceEEEEeec
Q 039743 81 GVYVLGICYGLQLMVQKLDGVVKVGEK---------------------QEYGRMEILVERSSGIFGNKKVGHHQVVWMSH 139 (531)
Q Consensus 81 ~iPvLGIC~G~Qlla~~~GG~v~~~~~---------------------~e~G~~~v~~~~~~~l~~~~~~~~~~~v~~~H 139 (531)
++||||||+|||+|+...++....... .+..+..+.....+..+...... ..+++.|
T Consensus 79 gkPilGIC~G~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~h 156 (218)
T d2abwa1 79 KKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTA--ACIRAPY 156 (218)
T ss_dssp CCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTTCEE--EEESCCE
T ss_pred CCeEEEecHHHHHHHHhccCCccccccccccccccccccceecccCCcccccccceeeccCCccccCcccc--eeEEeeE
Confidence 999999999999998865443322111 11122223333333444444333 4556666
Q ss_pred cCccccCCCCcEEEEEeCCC-----cEEEEEECCCcEEEEecCCCCCCCcccchhhhhhe
Q 039743 140 GDEAVVLPDGFEVVARSQQG-----AVAAVENREKRLFGLQYHPEVTHSPEGMETLRYFL 194 (531)
Q Consensus 140 ~~~v~~lp~g~~vla~s~~~-----~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~~F~ 194 (531)
++. ..+++...++...++ .++|+++ ++++|+|||||.+++ .+++++|+
T Consensus 157 ~~~--~~~~~~~~~a~~~~~~~g~~~i~av~~--~ni~G~QFHPE~s~d---~r~~~~F~ 209 (218)
T d2abwa1 157 IRE--ILSDEVKVLATFSHESYGPNIIAAVEQ--NNCLGTVFHPELLPH---TAFQQYFY 209 (218)
T ss_dssp EEE--ECCTTCEEEEEEEETTTEEEEEEEEEE--TTEEEESSCGGGSSC---CHHHHHHH
T ss_pred EEE--eecCChhhheeeccccCCCeEEEEEec--CCEEEEEcCCeecCC---chHHHHHH
Confidence 665 356777777765322 4788874 789999999999875 35788886
|
| >d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: NH3-dependent NAD+-synthetase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=3.7e-22 Score=195.17 Aligned_cols=214 Identities=22% Similarity=0.207 Sum_probs=145.5
Q ss_pred hhhheeccccccccccccchhhhhhhhhhccccC---ccceeeccCCCCCHHHHHHHHHHHhCC----------cEEEEE
Q 039743 190 LRYFLFDVCGVNAGWKLENVLDEEVKCIKDTVGL---EDHVICALSGGVDSTVAATLVHKAIGD----------RLHCVF 256 (531)
Q Consensus 190 ~~~F~~~~~~~~~~w~~~~~~~~~~~~i~~~v~~---~~kvvvalSGGvDS~v~a~l~~k~~g~----------~v~~v~ 256 (531)
++.++.+.+++++.|++++.++..+.+|++++.+ .++++|++|||+||+|+|+|+++|+|. +++++.
T Consensus 2 ~~~~~~~~~~~~p~~~~ee~i~~~v~~L~dy~~k~~~~k~vVvGlSGGIDSav~A~L~~~Alg~~~v~~g~~~~~~i~v~ 81 (274)
T d1wxia1 2 LQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVR 81 (274)
T ss_dssp HHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred hHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEECCCCHHHHHHHHHHHHHHHHHhhhhccccceEEEEe
Confidence 3556678899999999999999999999999853 256999999999999999999999852 567888
Q ss_pred EeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC--cccccchhhHHH----HHHHHHHHHHhhhhcCCC
Q 039743 257 VDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID--PETKRKIIGKEF----ICIFDAFAHDLEQKLGKK 330 (531)
Q Consensus 257 id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~--p~~kr~~~~~~~----~~~~~~~a~~~g~~~~~~ 330 (531)
++.+.... .+++...++..+++.+..++++..+.+....+.+ .+......+|.. ..+++.+|.+.
T Consensus 82 mp~~~~~~--~~d~~~~~~~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~N~~aRiR~~~ly~~A~~~------- 152 (274)
T d1wxia1 82 LPYGVQAD--EQDCQDAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMT------- 152 (274)
T ss_dssp CCSSSCTT--HHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred cCCcccch--HHHHHHHHHhhcCccccccccchHHHHHHHhhhhcccccCcccccchhHHHHHHHHHHHHHhc-------
Confidence 87665433 2334444666778889899988655332211100 011112233332 33455556544
Q ss_pred CcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCC
Q 039743 331 PAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPG 410 (531)
Q Consensus 331 ~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~ 410 (531)
.+++.||.+. .|. ..|+ .|+|++++. .+.||.+|+|+|||++|+++|+|++++.++|+++
T Consensus 153 -~~lVlgTgNk--sE~--~~Gy--------~TkyGD~~~-------di~Pl~~L~K~eV~~La~~l~iP~~Ii~k~Psa~ 212 (274)
T d1wxia1 153 -SGVVVGTDHA--AEA--ITGF--------FTKYGDGGT-------DINPLYRLNKRQGKQLLAALACPEHLYKKAPTAD 212 (274)
T ss_dssp -TEEEBCCCCH--HHH--TTTC--------SCTTTTTCC-------SBCTTTTCCHHHHHHHHHHTTCCGGGTSCC----
T ss_pred -CCcCCCCCCc--ccc--cccc--------cccccccch-------hHhhhcccchHHHHHHHHHHhhcccceecCCCCc
Confidence 4688887543 232 2344 678888666 7899999999999999999999999999998765
Q ss_pred CCccccccCC---CCcchHHHHHhhhhHHH
Q 039743 411 PGLAVRVLGD---VTEGNSLDILRQVDEIF 437 (531)
Q Consensus 411 p~la~r~~g~---vt~~~l~~~~~~~d~~~ 437 (531)
| ..++ .+++.|+-.++..|.++
T Consensus 213 --L---~~~q~~~~DE~~lG~~Y~~lD~~l 237 (274)
T d1wxia1 213 --L---EDDRPSLPDEVALGVTYDNIDDYL 237 (274)
T ss_dssp --------------CHHHHSSCHHHHHHHH
T ss_pred --c---ccCCCCCCCHHHhCCCHHHHHHHH
Confidence 4 3344 67777755688888774
|
| >d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: HTS-like domain: Homoserine O-succinyltransferase HTS (MetA) species: Bacillus cereus [TaxId: 1396]
Probab=99.82 E-value=6.4e-21 Score=186.51 Aligned_cols=183 Identities=19% Similarity=0.153 Sum_probs=133.7
Q ss_pred CEEEEEeCCCC---cHHHHHHHHHHCCCEEEEEeCC------------------CChhccccCCCCEEEEcCCCCCC--C
Q 039743 6 ELVLILDYGSQ---YTHLITRRIRSLSILSLCLSGT------------------CSLDDITAKNPRVVILSGGPHSV--H 62 (531)
Q Consensus 6 ~~I~IlD~G~~---~~~~i~r~l~~~G~~~~v~~~~------------------~~~~~~~~~~~dgiIlsGGp~s~--~ 62 (531)
.+|+||+.=.. ....++|.|......+++.... .+++++...++||+|++|+|.++ +
T Consensus 20 L~I~iLNlMP~k~~TE~qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglIITGap~~~~~f 99 (281)
T d2ghra1 20 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSF 99 (281)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEECCCSCTTSCG
T ss_pred eEEEEEecCCcchhhHHHHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEEeCCCCCcccc
Confidence 38999976221 1223566665555555544211 12334445679999999999987 4
Q ss_pred CCCCCCChH--HHHHHHHhCCCcEEEeeHHHHHHHHHcCCEEeec-CcccceeeeEEEe-cCCccccCCCCCceEEEEee
Q 039743 63 SPDAPAFPA--GFLEWALSNGVYVLGICYGLQLMVQKLDGVVKVG-EKQEYGRMEILVE-RSSGIFGNKKVGHHQVVWMS 138 (531)
Q Consensus 63 ~~~~~~~~~--~l~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~-~~~e~G~~~v~~~-~~~~l~~~~~~~~~~~v~~~ 138 (531)
++ .+|+.. ++++++.++++|+||||+|+|+++.++||.+.+. +.+.+|.....+. +.++++.++++. +.+.++
T Consensus 100 ed-v~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~~~~k~~Gv~~~~~~~~~~pL~~g~~d~--f~~p~S 176 (281)
T d2ghra1 100 EE-VDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHEVREQHVKLLQGFDEL--FFAPHS 176 (281)
T ss_dssp GG-STTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCSSCGGGTTCCSE--EEEEEE
T ss_pred cc-cccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCccccCCCceEEEEEEeeccCCChhccCCcch--hheeee
Confidence 34 355543 7899999999999999999999999999988765 5668888876655 457999999988 899888
Q ss_pred ccCcc----ccCCCCcEEEEEeCCCcEEEEEECCCcEEEEecCCCCCCCcccchhhh
Q 039743 139 HGDEA----VVLPDGFEVVARSQQGAVAAVENREKRLFGLQYHPEVTHSPEGMETLR 191 (531)
Q Consensus 139 H~~~v----~~lp~g~~vla~s~~~~v~ai~~~~~~i~gvQFHPE~~~~~~g~~i~~ 191 (531)
|...+ ...+++..++|.|+.+.+.++...+++++++|+|||++......++.|
T Consensus 177 r~~~~~~d~v~~~p~l~vLa~S~~~g~~~~~~~~~~~~~iQgHPEYd~~tL~~EY~R 233 (281)
T d2ghra1 177 RHTEVRESDIREVKELTLLANSEEAGVHLVIGQEGRQVFALGHSEYSCDTLKQEYER 233 (281)
T ss_dssp EEEECCHHHHHTCTTEEEEEEETTTEEEEEEEGGGTEEEECSCTTCCTTHHHHHHHH
T ss_pred ecccCCHHHHhhCCCceEEeecCCcccEEEEECCCCEEEEeCCCCcchhHHHHHHHH
Confidence 84222 245667888898888777778778889999999999987644444443
|
| >d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PP-loop ATPase domain: TilS-like protein Aq 1887 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.81 E-value=1.9e-20 Score=177.55 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=120.0
Q ss_pred ccccCccceeeccCCCCCHHHHHHHHHHH---hC-CcEEEEEEeCCCCChh--HHHHHHHHHHHhCCCcEEEEECchHHH
Q 039743 219 DTVGLEDHVICALSGGVDSTVAATLVHKA---IG-DRLHCVFVDNGLLRYK--ERERVMDTFEKDLHLPVTCVDATDQFL 292 (531)
Q Consensus 219 ~~v~~~~kvvvalSGGvDS~v~a~l~~k~---~g-~~v~~v~id~g~~~~~--e~~~~~~~la~~lgi~~~vvd~~~~f~ 292 (531)
+.+.+++||+||+|||+||+++++++.+. .+ ..+.++|+|||+.... +.+.+ +.+|+.+|+++.+.+.+....
T Consensus 19 ~l~~~~~kv~Va~SGG~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r~~s~~~~~~~-~~~~~~l~i~~~i~~~~~~~~ 97 (216)
T d1wy5a1 19 KIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFC-KEFAKERNMKIFVGKEDVRAF 97 (216)
T ss_dssp CSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHH-HHHHHHHTCCEEEEECCHHHH
T ss_pred hccCCCCeEEEEeCCcHHHHHHHHHHHHHHHhcCCCcEEEEEeecccccchhhhhhHH-HHHHHhhhhhhhhhccchhhh
Confidence 33566789999999999999999999874 23 3688999999986542 33334 458999999999999876543
Q ss_pred HhhcCCCCcccccchhh-HHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCC
Q 039743 293 SKLKGVIDPETKRKIIG-KEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGG 368 (531)
Q Consensus 293 ~~l~~~~~p~~kr~~~~-~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~ 368 (531)
...... .++.+| +.++..+...|++.| +++|++|||.+|.+|+.. +.|.| ..++.+
T Consensus 98 ~~~~~~-----~~~~~~R~~Ry~~l~~~a~~~~------~~~ia~GH~~dD~~Et~l~~l~rg~~---------~~~l~~ 157 (216)
T d1wy5a1 98 AKENRM-----SLEEAGRFLRYKFLKEILESEG------FDCIATAHHLNDLLETSLLFFTRGTG---------LDGLIG 157 (216)
T ss_dssp HHHTTC-----CHHHHHHHHHHHHHHHHHHHTT------CSEEECCCCHHHHHHHHHHHHHHCCC---------HHHHHC
T ss_pred ccCCcc-----chHHHHHHHHHHHhhhhccccc------cceeEeeeeccchHHHHHHHhhcCCc---------cccccC
Confidence 332211 122334 346678889999888 899999999999999731 12221 123334
Q ss_pred CCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 369 LPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 369 l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
+.. ....+++||..++|+||+++|++.|+|. +..|++
T Consensus 158 ~~~-~~~~i~RPLl~~~k~eI~~~a~~~~l~~---~~D~sN 194 (216)
T d1wy5a1 158 FLP-KEEVIRRPLYYVKRSEIEEYAKFKGLRW---VEDETN 194 (216)
T ss_dssp SCS-EETTEECTTTTCCHHHHHHHHHHTTCCC---CCCGGG
T ss_pred CCc-ccceecchhhcCCHHHHHHHHHHcCCcE---EECcCC
Confidence 443 2446899999999999999999999995 555544
|
| >d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=2.3e-20 Score=177.45 Aligned_cols=185 Identities=17% Similarity=0.199 Sum_probs=127.5
Q ss_pred EEEEE----eCCCCcHHHHHHHHHH----CCCEEEEEeCCCC-hhc--c-ccCCCCEEEEcCCCCCCCCCCCCCChHHHH
Q 039743 7 LVLIL----DYGSQYTHLITRRIRS----LSILSLCLSGTCS-LDD--I-TAKNPRVVILSGGPHSVHSPDAPAFPAGFL 74 (531)
Q Consensus 7 ~I~Il----D~G~~~~~~i~r~l~~----~G~~~~v~~~~~~-~~~--~-~~~~~dgiIlsGGp~s~~~~~~~~~~~~l~ 74 (531)
+|+++ ++.+.|. ++..+|+. +++.+.+.+.+.. .++ . .+.++|||++|||.+..-.+ -....+
T Consensus 5 ~Ia~vGKY~~l~DaY~-Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L~~~dGIlvPGGFG~RG~e----Gki~ai 79 (258)
T d1s1ma1 5 TIGMVGKYIELPDAYK-SVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVE----GMITTA 79 (258)
T ss_dssp EEEEEESSCSSGGGGH-HHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTHH----HHHHHH
T ss_pred EEEEEeCcCCCchhHH-hHHHHHHHhHHhcCCeEEEEEEccccccccccccccccccEEeecccCcCCHH----HHHHHH
Confidence 57777 5566773 56666664 4567777665432 111 1 15789999999998842111 124678
Q ss_pred HHHHhCCCcEEEeeHHHHHHHHHcCCEEeec----------------------------------------Ccccceeee
Q 039743 75 EWALSNGVYVLGICYGLQLMVQKLDGVVKVG----------------------------------------EKQEYGRME 114 (531)
Q Consensus 75 ~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~----------------------------------------~~~e~G~~~ 114 (531)
++|+++++|+||||+|||+++..+...|... .....|...
T Consensus 80 ~yARen~iPfLGIClGmQ~avIE~ARnvlg~~~A~S~Ef~p~t~~pvi~~~~~~~~~~~~~~~~~~~~~~GgTmrlG~~~ 159 (258)
T d1s1ma1 80 RFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQ 159 (258)
T ss_dssp HHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEE
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCEEEecccccccCCceeEeecccCccccccCcccc
Confidence 9999999999999999999998753322210 112345556
Q ss_pred EEEecCCccccCCCCCceEEEEeeccCcccc------CCCCcEEEEEeCCC-cEEEEEECCCc-EEEEecCCCCCCCc-c
Q 039743 115 ILVERSSGIFGNKKVGHHQVVWMSHGDEAVV------LPDGFEVVARSQQG-AVAAVENREKR-LFGLQYHPEVTHSP-E 185 (531)
Q Consensus 115 v~~~~~~~l~~~~~~~~~~~v~~~H~~~v~~------lp~g~~vla~s~~~-~v~ai~~~~~~-i~gvQFHPE~~~~~-~ 185 (531)
+.+.+++.+.+.+... .+.--+.|.|.|.. -..|+.+.|.++++ .+++++.+++| ++|+|||||+...+ .
T Consensus 160 ~~l~~~s~~~~~Y~~~-~i~ERHRHRYevN~~y~~~le~~gl~~sG~s~dg~~vEiiEl~~HPffvg~QfHPEf~Srp~~ 238 (258)
T d1s1ma1 160 CQLVDDSLVRQLYNAP-TIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRD 238 (258)
T ss_dssp EEECTTCHHHHHTTSS-EEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTTT
T ss_pred hhhhhHHHHHHhcCcc-eehhhhhcchhhhhhhhhhhhcCCceeeeecCCCCeEEEEEeCCCCeEEEecCCccccCCCCC
Confidence 6666666554444433 35566788888742 24699999999887 69999999988 57999999998765 5
Q ss_pred cchhhhhheeccc
Q 039743 186 GMETLRYFLFDVC 198 (531)
Q Consensus 186 g~~i~~~F~~~~~ 198 (531)
...+|..|+ ++|
T Consensus 239 p~PLF~~Fi-~Aa 250 (258)
T d1s1ma1 239 GHPLFAGFV-KAA 250 (258)
T ss_dssp CCHHHHHHH-HHH
T ss_pred CChHHHHHH-HHH
Confidence 678999998 544
|
| >d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=2.2e-20 Score=177.06 Aligned_cols=185 Identities=21% Similarity=0.236 Sum_probs=124.9
Q ss_pred EEEEE----eCCCCcHHHHHHHHHHC----CCEEEEEeCCC-Ch--hcc--ccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 7 LVLIL----DYGSQYTHLITRRIRSL----SILSLCLSGTC-SL--DDI--TAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 7 ~I~Il----D~G~~~~~~i~r~l~~~----G~~~~v~~~~~-~~--~~~--~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
+|+++ ++-+.| .++..+|+.+ ++.+.+.+.+. ++ +++ .+.++|||++|||++..--+ -....
T Consensus 5 ~IaiVGKY~~l~DaY-~Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~L~~~dGIlvPGGFG~rG~e----Gki~a 79 (250)
T d1vcoa1 5 KIAIAGKYVKMPDAY-LSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVRGIE----GKVRA 79 (250)
T ss_dssp EEEEEESCC---CTT-HHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSSTTHH----HHHHH
T ss_pred EEEEEeCCCCCchHH-HHHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHHHhcCCeEEecCCCCccchH----HHHHH
Confidence 57777 445666 3566777654 66666655432 11 111 15789999999998842111 12467
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHHHcCCEEeec------------------------------CcccceeeeEEEecCCcc
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQKLDGVVKVG------------------------------EKQEYGRMEILVERSSGI 123 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~~~GG~v~~~------------------------------~~~e~G~~~v~~~~~~~l 123 (531)
+++|+++++|+||||+|||+++..+...|... .....|...+.+.+++.+
T Consensus 80 i~yARen~iPfLGIClGmQ~avIEfARnvlgl~~A~s~Ef~~~~~~pvi~~~~e~~~~~~~ggtmRLG~~~~~l~~~S~~ 159 (250)
T d1vcoa1 80 AQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLL 159 (250)
T ss_dssp HHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTSHH
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCeEEEeeccceeccccCccccccceeeeecCCcHH
Confidence 89999999999999999999998753322221 122345666777776655
Q ss_pred ccCCCCCceEEEEeeccCcccc-----C-CCCcEEEEEeCC------CcEEEEEECCCcEE-EEecCCCCCCCc-ccchh
Q 039743 124 FGNKKVGHHQVVWMSHGDEAVV-----L-PDGFEVVARSQQ------GAVAAVENREKRLF-GLQYHPEVTHSP-EGMET 189 (531)
Q Consensus 124 ~~~~~~~~~~~v~~~H~~~v~~-----l-p~g~~vla~s~~------~~v~ai~~~~~~i~-gvQFHPE~~~~~-~g~~i 189 (531)
.+-+... .+.-.+-|.+.|.. + ..|+.+.+.+++ +.+++++.+++|+| |+|||||+...+ ....+
T Consensus 160 ~~~Y~~~-~i~ERhRHRYevN~~y~~~le~~gl~~sg~~~d~~~~~~~lvEiiEl~~HPffvgvQfHPEf~Srp~~phPL 238 (250)
T d1vcoa1 160 HRLYGKE-EVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPP 238 (250)
T ss_dssp HHHHCCS-EEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHH
T ss_pred Hhhcccc-EEeehcccceeechhhhHHHHhccccccccCcccccCCCCeEEEEECCCCCcEEEecCCccccCCCCCCCcc
Confidence 5545443 35566778887631 1 348999999865 47999999999965 999999998766 57899
Q ss_pred hhhheeccc
Q 039743 190 LRYFLFDVC 198 (531)
Q Consensus 190 ~~~F~~~~~ 198 (531)
|..|+ ++|
T Consensus 239 F~~fi-~Aa 246 (250)
T d1vcoa1 239 FVGFV-EAA 246 (250)
T ss_dssp HHHHH-HHH
T ss_pred HHHHH-HHH
Confidence 99998 544
|
| >d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: NH3-dependent NAD+-synthetase species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=1.7e-20 Score=183.04 Aligned_cols=210 Identities=20% Similarity=0.168 Sum_probs=145.6
Q ss_pred ccccccccccccchhhhhhhhhhccccC--ccceeeccCCCCCHHHHHHHHHHHh-------C-CcEEEEEEeCCCCChh
Q 039743 196 DVCGVNAGWKLENVLDEEVKCIKDTVGL--EDHVICALSGGVDSTVAATLVHKAI-------G-DRLHCVFVDNGLLRYK 265 (531)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~~i~~~v~~--~~kvvvalSGGvDS~v~a~l~~k~~-------g-~~v~~v~id~g~~~~~ 265 (531)
+..+.++.|+++..++..+.+||+++.+ .++++|++|||+||+|+|+|+++++ | .+++++.+++.....
T Consensus 8 ~~~~~~p~~d~~e~i~~~v~~lrdy~~ksg~~gvvvglSGGIDSAv~a~L~~~A~~~~~~~~g~~~v~~v~mP~~~~~~- 86 (271)
T d1kqpa_ 8 RELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQD- 86 (271)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSSCTT-
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHHHHHHHHHHHhcCCceeeeeecCccccch-
Confidence 3446788999999999999999999843 3689999999999999999999987 5 789999998765433
Q ss_pred HHHHHHHHHHHhCCCcEE-EEECchHH---HHhhcCCCCcccccchhhHH----HHHHHHHHHHHhhhhcCCCCcEEEec
Q 039743 266 ERERVMDTFEKDLHLPVT-CVDATDQF---LSKLKGVIDPETKRKIIGKE----FICIFDAFAHDLEQKLGKKPAYLVQG 337 (531)
Q Consensus 266 e~~~~~~~la~~lgi~~~-vvd~~~~f---~~~l~~~~~p~~kr~~~~~~----~~~~~~~~a~~~g~~~~~~~~~l~~G 337 (531)
.+++.. .++.+++.+. .+++...+ .+.+.............+|. +.-++..+|.+.| .++.|
T Consensus 87 -~~~a~~-~~~~~~~~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~~~~NiqaRiR~~~Ly~~An~~g--------~lvlg 156 (271)
T d1kqpa_ 87 -EDDAQL-ALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEG--------LLVLG 156 (271)
T ss_dssp -HHHHHH-HHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHT--------CEEBC
T ss_pred -hhhHHH-HHHHhccccceEEeehHHHHhHHHHHHHhhhccccchhccccccccccchhHHhHhhcC--------CccCC
Confidence 233333 5667787764 46776443 22221111111111122233 2335566666554 46666
Q ss_pred ccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccc
Q 039743 338 TLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRV 417 (531)
Q Consensus 338 t~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~ 417 (531)
|..- .| .+.|+ .|+|++++. .+.||.+|+|.|||++|+++|+|++++.+.|+++ |...-
T Consensus 157 TgNk--sE--~~~Gy--------~TkyGD~~~-------di~Pi~dL~K~eV~~La~~lgip~~ii~k~PSae--L~~~~ 215 (271)
T d1kqpa_ 157 TDHA--AE--AVTGF--------FTKYGDGGA-------DLLPLTGLTKRQGRTLLKELGAPERLYLKEPTAD--LLDEK 215 (271)
T ss_dssp CCCH--HH--HTTTC--------SCTTTTTCC-------SBCTTTTCCHHHHHHHHHHTTCCTHHHHSCCBCC--CCSSS
T ss_pred Ccch--hh--hhcch--------hhhhhhccc-------hhccccccCHHHHHHHHHhhhhcccccccCCccc--cccCC
Confidence 6432 23 22454 788888776 7899999999999999999999999999987665 53334
Q ss_pred cCCCCcchHHHHHhhhhHHH
Q 039743 418 LGDVTEGNSLDILRQVDEIF 437 (531)
Q Consensus 418 ~g~vt~~~l~~~~~~~d~~~ 437 (531)
+|+.+++.++-.++..|.++
T Consensus 216 ~~q~DE~~lg~~Y~~lD~~l 235 (271)
T d1kqpa_ 216 PQQSDETELGISYDEIDDYL 235 (271)
T ss_dssp TTCBHHHHHSSCHHHHHHHH
T ss_pred CCCCCHHhcCCCHHHHHHHH
Confidence 68999988854788888774
|
| >d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PP-loop ATPase domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=3.9e-19 Score=169.81 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=108.6
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHh----CCcEEEEEEeCCCCCh--hHHHHHHHHHHHhCCCcEEEEECchHHHHh
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAI----GDRLHCVFVDNGLLRY--KERERVMDTFEKDLHLPVTCVDATDQFLSK 294 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~----g~~v~~v~id~g~~~~--~e~~~~~~~la~~lgi~~~vvd~~~~f~~~ 294 (531)
+.+.+||+||+|||+||+++++++++.. +.++.++|+|||+... .+.+.+.+ +|+++|+++++.+.....
T Consensus 10 l~~~kkvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~~s~~~~~~~~~-~~~~~~i~~~i~~~~~~~--- 85 (227)
T d1ni5a1 10 LLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCEN-VCQQWQVPLVVERVQLAQ--- 85 (227)
T ss_dssp HTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHH-HHHHTTCCEEEECCCCCC---
T ss_pred cCCCCcEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCcchhhhHHHHHH-HHhhccCcceeeeccccc---
Confidence 3347899999999999999999998863 5689999999998643 23444444 899999999998775321
Q ss_pred hcCCCCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCC---CCCCCCCcccccccccccCCCCc
Q 039743 295 LKGVIDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCP---PPGTGRTHSHTIKSHHNVGGLPK 371 (531)
Q Consensus 295 l~~~~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~---~~g~g~~~~~~ikt~~~~~~l~~ 371 (531)
...+.+..+ ...+.....+...+ ++.+++||+.+|.+|+.. +.|.| +.. ..+++.
T Consensus 86 --~~~~~e~~~-----~~~~~~~~~~~~~~------~~~i~~gH~~dD~~Et~l~~l~~g~~------~~~---l~~~~~ 143 (227)
T d1ni5a1 86 --EGLGIEAQA-----RQARYQAFARTLLP------GEVLVTAQHLDDQCETFLLALKRGSG------PAG---LSAMAE 143 (227)
T ss_dssp --SSSTTTTHH-----HHHHHHHHHHTCCT------TEEEECCCCHHHHHHHHHHHHTTTCC------TTG---GGCCCS
T ss_pred --cccchhhHH-----HHHHHHHHHHHhhh------hHHHHHHHHHHhhhhhhhHhhhcccc------ccc---cccccc
Confidence 111111110 11111222233333 789999999999999742 22321 122 223332
Q ss_pred ---ccccceecccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 372 ---DMKLKLIEPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 372 ---~~~~~ii~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
...+.+++||.+++|+||+++++..|+|. +..|++
T Consensus 144 ~~~~~~~~iiRPLl~~~k~eI~~~~~~~~l~~---~~d~sn 181 (227)
T d1ni5a1 144 VSEFAGTRLIRPLLARTRGELVQWARQYDLRW---IEDESN 181 (227)
T ss_dssp EEEETTEEEECGGGSCCHHHHHHHHHHTTCCC---BCCCCG
T ss_pred ccccccccchhhhhcCCHHHHHHHhccccccc---ccCCCC
Confidence 23567999999999999999999999995 666655
|
| >d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: FGAM synthase PurL, amidotransferase domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.58 E-value=1.3e-14 Score=139.65 Aligned_cols=174 Identities=20% Similarity=0.229 Sum_probs=114.5
Q ss_pred CEEEEEeC-CCCcHHHHHHHHHHCCCEEEEEeCCCChh-ccccCCCCEEEEcCCCCCCCCCCCCC---------Ch----
Q 039743 6 ELVLILDY-GSQYTHLITRRIRSLSILSLCLSGTCSLD-DITAKNPRVVILSGGPHSVHSPDAPA---------FP---- 70 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~~i~r~l~~~G~~~~v~~~~~~~~-~~~~~~~dgiIlsGGp~s~~~~~~~~---------~~---- 70 (531)
+||+||-| |+......+++++.+|++++++..+.-.+ ...+.++|+|+++||.+ |.+.... ..
T Consensus 7 pkvaVl~~pGtNcd~e~~~Af~~aG~~~~~v~~~dl~~~~~~L~~~~~lvipGGFS--ygD~l~ag~~~a~~~~~~~~~~ 84 (262)
T d1t3ta2 7 PKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFS--YGDVLGAGEGWAKSILFNHRVR 84 (262)
T ss_dssp CEEEEEECTTBCCHHHHHHHHHHTTCEEEEEEHHHHHHTSCCGGGCSEEEECCBCG--GGGTTSTTHHHHHHHHHSHHHH
T ss_pred CeEEEEeCCCCCcHHHHHHHHHHcCCceEEEEeeecccCcccccccceEEEecccc--ccccccchhHHHhhhhhhhHHH
Confidence 68999977 66667789999999999999987653221 12257899999999988 3222110 00
Q ss_pred HHHHHHHHhCCCcEEEeeHHHHHHHHH--c-CC-----EEeecCcccc--eeeeEEEec-CCccccCCCCCceEEEEeec
Q 039743 71 AGFLEWALSNGVYVLGICYGLQLMVQK--L-DG-----VVKVGEKQEY--GRMEILVER-SSGIFGNKKVGHHQVVWMSH 139 (531)
Q Consensus 71 ~~l~~~~~~~~iPvLGIC~G~Qlla~~--~-GG-----~v~~~~~~e~--G~~~v~~~~-~~~l~~~~~~~~~~~v~~~H 139 (531)
.++.+.+.+.+.||||||.|+|+|.+. + .| +...+....| -|..+.+.. .+.+++++... .+.+|..|
T Consensus 85 ~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg~~~~~~~~~N~s~rfe~rw~~~~v~~~~s~~~~~~~g~-~l~ipiaH 163 (262)
T d1t3ta2 85 DEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGS-QMPIAVSH 163 (262)
T ss_dssp HHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECCCSCGGGTTCTTC-EEEEEEEE
T ss_pred HHHHHHhhcCCceEEeechHHHHHHHhcccCCCcccCcccccccCCeEEEEEeeeccccccChhhccCCCc-ceEeeeec
Confidence 122223334689999999999999984 2 22 2333333333 355555553 35677777533 48899999
Q ss_pred cCccccCCC----------CcEEEEE-------------eCCC---cEEEEEECCCcEEEEecCCCCCC
Q 039743 140 GDEAVVLPD----------GFEVVAR-------------SQQG---AVAAVENREKRLFGLQYHPEVTH 182 (531)
Q Consensus 140 ~~~v~~lp~----------g~~vla~-------------s~~~---~v~ai~~~~~~i~gvQFHPE~~~ 182 (531)
+..-...++ +..++-. ++++ .||+|.+++++++|+++|||+..
T Consensus 164 gEG~f~~~~~~~l~~L~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IAGIcs~~GrvlgmMPHPER~~ 232 (262)
T d1t3ta2 164 GEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPERVF 232 (262)
T ss_dssp SSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSSEEEESSBGGGSS
T ss_pred CCCCcccCCHHHHHHhhhccceEEEEEcCCCccccccCCCCCCCccceeEEECCCCCEEEEcCChhHhh
Confidence 876432221 3333322 2333 49999999999999999999863
|
| >d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=7.7e-15 Score=133.16 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=94.9
Q ss_pred cccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh----
Q 039743 220 TVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL---- 295 (531)
Q Consensus 220 ~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l---- 295 (531)
.+..++||+||+|||+||+|++++|++. |.+++++++++|..+..+.++.....++.....+..++....+....
T Consensus 6 ~~~~gkKv~vA~SGGvDSsvll~lL~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T d1k92a1 6 HLPVGQRIGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAI 84 (188)
T ss_dssp SCCTTSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCCHHHHHHHHHHHHc-CCcCeEEeeecCCCchHHHHHHHHHHHHcccccccccchhhhhhhhhhhHH
Confidence 3455789999999999999999999987 99999999999987665444443333444566777787765443221
Q ss_pred -cCCCC-----cc-cccchhhHH-HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccC
Q 039743 296 -KGVID-----PE-TKRKIIGKE-FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVG 367 (531)
Q Consensus 296 -~~~~~-----p~-~kr~~~~~~-~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~ 367 (531)
..... .. ..++.+++. +...+...+.+.+ ...++.++....... ...+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~------~~~~~~~~~~~~~~~----------------~~~~~~ 142 (188)
T d1k92a1 85 QCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDG------VNIWGDGSTYKGNDI----------------ERFYRY 142 (188)
T ss_dssp HHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTT------CCEEECCCCTTSSHH----------------HHHHHH
T ss_pred HHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHhC------chhhhhhhccccccc----------------ccchhH
Confidence 11100 00 011122222 2234444555554 667766653221100 000000
Q ss_pred CCCcccccceecccccC-------CHHHHHHHHHHcCCCc
Q 039743 368 GLPKDMKLKLIEPLKLL-------FKDEVRQLGRILNVPE 400 (531)
Q Consensus 368 ~l~~~~~~~ii~PL~~l-------~K~eVr~la~~lglp~ 400 (531)
........++++|+++. +|+||++||++.|||.
T Consensus 143 ~~~~~~~~~ii~P~~~~~~~~~~~sk~ei~~ya~~~gi~~ 182 (188)
T d1k92a1 143 GLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDY 182 (188)
T ss_dssp HHHHCTTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCC
T ss_pred HHhhCCCCCeechhhhhhhhcccCCHHHHHHHHHHcCCCC
Confidence 01111245789998873 7999999999999994
|
| >d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Queuosine biosynthesis protein QueC species: Erwinia carotovora [TaxId: 554]
Probab=99.43 E-value=2.2e-13 Score=129.19 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=106.0
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh------cC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL------KG 297 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l------~~ 297 (531)
.+|+|+++|||+||+++|+++.+. |.++++||+|+|+....|.+.+.. .++++++++..++....+.... ..
T Consensus 1 mkK~Vvl~SGGlDS~v~a~~l~~~-g~~v~~v~~~ygqr~~~E~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (230)
T d2pg3a1 1 MKRAVVVFSGGQDSTTCLIQALQD-YDDVHCITFDYGQRHRAEIEVAQE-LSQKLGAAAHKVLDVGLLNELATSSLTRDS 78 (230)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-CSEEEEEEEESSSSCHHHHHHHHH-HHHHHTCSEEEEEECTHHHHTSHHHHHHTT
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHc-CCeEEEEEEECCCccHHHHHHHHH-hHHhhccccccccchhhhhhcccccccccc
Confidence 368999999999999999999998 999999999999887777776665 7788898877766543321110 00
Q ss_pred CCCcc--------cccchhhHH--HHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccC
Q 039743 298 VIDPE--------TKRKIIGKE--FICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVG 367 (531)
Q Consensus 298 ~~~p~--------~kr~~~~~~--~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~ 367 (531)
..-+. ......++. |.......|...+ .+.+++|.+..|... ++. .+...+++..++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~p~r~~~~l~~~~~~a~~~~------~~~i~~G~~~~d~~~---~~d---~~~~f~~~~~~~~ 146 (230)
T d2pg3a1 79 IPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVG------AEAVITGVCETDFSG---YPD---CRDEFVKALNQAI 146 (230)
T ss_dssp CCCCC---------CCCCTTHHHHHHHHHHHHHHHHT------CSEEECCCCSCSSSC---CGG---GSHHHHHHHHHHH
T ss_pred ccccchhhhhccCCceeeeechHHHHHHHHHHHHHhh------ccccccccccccccc---ccc---ccHhHHHHHHHHH
Confidence 00000 001111221 3344455566666 889999998877422 110 1123444444433
Q ss_pred CCCcccccceecccccCCHHHHHHHHHHcCC
Q 039743 368 GLPKDMKLKLIEPLKLLFKDEVRQLGRILNV 398 (531)
Q Consensus 368 ~l~~~~~~~ii~PL~~l~K~eVr~la~~lgl 398 (531)
.+......+++.|+..++|.||.++++.++.
T Consensus 147 ~~~~~~~~~i~~P~~~~tK~EI~~~~~~~~~ 177 (230)
T d2pg3a1 147 VLGIARDIRFETPLMWLNKAETWALADYYQQ 177 (230)
T ss_dssp HHHHTSCCEEECTTTTCCHHHHHHHHHHTTC
T ss_pred HhcccccceeEeeeecCCHHHHHHHHHhccc
Confidence 3333346789999999999999999998764
|
| >d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=3.3e-13 Score=119.60 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=47.6
Q ss_pred cceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHH
Q 039743 225 DHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQF 291 (531)
Q Consensus 225 ~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f 291 (531)
+||+||||||+||+|+|+++++. |.+++++|++++.....+... +..+........+....+.+
T Consensus 2 ~KIvvalSGGvDS~vl~~lL~~~-~~~v~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 65 (168)
T d1vl2a1 2 EKVVLAYSGGLDTSVILKWLCEK-GFDVIAYVANVGQKDDFVAIK--EKALKTGASKVYVEDLRREF 65 (168)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEESSCCCCHHHHH--HHHHHHTCSEEEEEECHHHH
T ss_pred CEEEEEeccHHHHHHHHHHHHHc-CCeEEEEEcccCCCcchhHHH--HHHHHhcCccchhhhhHHHH
Confidence 68999999999999999999986 999999999999875544333 22445544555555554443
|
| >d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.35 E-value=1.8e-12 Score=114.18 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=48.1
Q ss_pred ceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECch
Q 039743 226 HVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATD 289 (531)
Q Consensus 226 kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~ 289 (531)
||+||+|||+||+|+++++++.+|.++++++++++.....+.. .. .+..++..........
T Consensus 2 KvlvA~SGG~DS~vll~lL~e~~~~~vi~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~ 62 (165)
T d1j20a1 2 KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEA--RE-KALRTGASKAIALDLK 62 (165)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTCEEEEEEEESSCSSCHHHH--HH-HHHHHTCSEEEEEECH
T ss_pred EEEEEEeCHHHHHHHHHHHHHcCCCEEEEEEeccCChHHHHHH--HH-HHHhccccceeeeehh
Confidence 7999999999999999999999899999999999886554332 22 3455677776666553
|
| >d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: ThiI-like domain: Hypothetical protein PH1313, C-terminal domain species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=6.9e-13 Score=113.83 Aligned_cols=132 Identities=18% Similarity=0.192 Sum_probs=88.9
Q ss_pred ccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCCCC
Q 039743 221 VGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGVID 300 (531)
Q Consensus 221 v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~~~ 300 (531)
++..+|+++.+|||+ |.|+++++.|. |.+++++|++++. ...+.+.+ +++.|. .| .
T Consensus 1 vGt~Gk~l~LlSGGi-SpVAa~lmmkR-G~~V~~v~f~~~~---~~~ekv~~-l~~~L~----------~y----~---- 56 (132)
T d1vbka1 1 IGTEGRMIGILHDEL-SALAIFLMMKR-GVEVIPVYIGKDD---KNLEKVRS-LWNLLK----------RY----S---- 56 (132)
T ss_dssp TTTTCEEEEECSSHH-HHHHHHHHHHB-TCEEEEEEESCSS---HHHHHHHH-HHHHHH----------TT----C----
T ss_pred CCcCceEEEeecCCc-hHHHHHHHHHC-CCEEEEEEEcCCH---HHHHHHHH-HHHHHH----------Hh----C----
Confidence 355789999999999 99999999998 9999999997663 33344443 554431 11 0
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCcccccceecc
Q 039743 301 PETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEP 380 (531)
Q Consensus 301 p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii~P 380 (531)
+..+.+.+.-.+.+.+.++|++++ ++.+++|.+..++.. - .++ |..|+.. .++.++||
T Consensus 57 ~~~~~~~~v~~~~~~~~riA~~~~------a~~ivtG~~~e~vgq-----v----asq---t~~~~~~----~~~pIlRP 114 (132)
T d1vbka1 57 YGSKGFLVVAESFDRVLKLIRDFG------VKGVIKGLRPNDLNS-----E----VSE---ITEDFKM----FPVPVYYP 114 (132)
T ss_dssp TTSCCCCEEESSHHHHHHHHHHHT------CCEEECCCCGGGCCT-----T----CHH---HHHHHHH----CSSCEECH
T ss_pred CCCCcEEEEeeHHHHHHHHHHHhh------hhceEEEEeccchhh-----H----HHH---HHHHHhc----cccccccC
Confidence 000111122234466778899988 889999975544321 0 023 3333321 35679999
Q ss_pred cccCCHHHHHHHHHHcCC
Q 039743 381 LKLLFKDEVRQLGRILNV 398 (531)
Q Consensus 381 L~~l~K~eVr~la~~lgl 398 (531)
|..++|+||.++|+++|+
T Consensus 115 Li~~DK~EIi~~Ar~IGl 132 (132)
T d1vbka1 115 LIALPEEYIKSVKERLGL 132 (132)
T ss_dssp HHHSCHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHhCc
Confidence 999999999999999996
|
| >d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PAPS reductase-like domain: Phosphoadenylyl sulphate (PAPS) reductase species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.9e-10 Score=107.59 Aligned_cols=161 Identities=11% Similarity=0.030 Sum_probs=104.0
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECchHHHHhh---cCCC-
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATDQFLSKL---KGVI- 299 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l---~~~~- 299 (531)
.+++++++|||+||+|+++|++++ +.++..+|+|+|...++-.+.+.+ +++.+|++++++.......... ....
T Consensus 44 ~~~v~vs~SgGkDS~vllhl~~~~-~~~~~vvf~DTg~~fpeT~e~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 121 (215)
T d1sura_ 44 PGEYVLSSSFGIQAAVSLHLVNQI-RPDIPVILTDTGYLFPETYRFIDE-LTDKLKLNLKVYRATESAAWQEARYGKLWE 121 (215)
T ss_dssp CSEEEEECCCCTTHHHHHHHHHHH-STTCEEEEEECSCBCHHHHHHHHH-HHHHTTCEEEEEECSSCHHHHHHHHCCGGG
T ss_pred CCCEEEEecCChHHHHHHHHHHhc-CCCccEEEEECCcCcHHHHHHHHH-HHHhcCceeeEEeccchHHHHHhhcCCccc
Confidence 368999999999999999999998 888999999999987766666554 8999999999987653322221 1110
Q ss_pred CcccccchhhHHHH-HHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccccccee
Q 039743 300 DPETKRKIIGKEFI-CIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLI 378 (531)
Q Consensus 300 ~p~~kr~~~~~~~~-~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii 378 (531)
.....++.||..+. +-+.+..++++ .+..++|.-.++-.. +.. ... +....+.-.+
T Consensus 122 ~~~~~~~~~c~~~K~~P~~~~l~~~~------~~~~i~G~Rr~Es~~-----Ra~---~~~---------~~~~~~~~kv 178 (215)
T d1sura_ 122 QGVEGIEKYNDINKVEPMNRALKELN------AQTWFAGLRREQSGS-----RAN---LPV---------LAIQRGVFKV 178 (215)
T ss_dssp SHHHHHHHHHHHHTHHHHHHHHHHTT------EEEEECCCCTTSSST-----TTT---CCS---------EEEETTEEEE
T ss_pred CCcchhhhhhcchhccchhhhhhccC------ceehHHHHhhcchHh-----Hhc---CCc---------eeecCCEEEE
Confidence 11122334443322 23444444444 566778864433211 110 000 1111122247
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCCC
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPFP 409 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~~ 409 (531)
.||.+++++||.++.++.|||..-++.+=|+
T Consensus 179 ~Pi~~Wt~~dVw~Yi~~~~lP~npLY~~Gy~ 209 (215)
T d1sura_ 179 LPIIDWDNRTIYQYLQKHGLKYHPLWDEGYL 209 (215)
T ss_dssp CTTTTCCHHHHHHHHHHHTCCCCGGGGGTCS
T ss_pred echHhCCHHHHHHHHHHcCCCCCchhhcCCC
Confidence 8999999999999999999997666665554
|
| >d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PAPS reductase-like domain: Sulfate adenylyltransferase subunit 2, CysD species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.15 E-value=1.3e-10 Score=106.57 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=63.4
Q ss_pred cchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHh---CCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEE
Q 039743 207 ENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAI---GDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVT 283 (531)
Q Consensus 207 ~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~---g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~ 283 (531)
+.+..+.++.||+.+...++++|++|||+||+|+++|+.+.. +..+..+++|+|....+..+.+.+ +++++|+++.
T Consensus 9 ~~l~~~ai~~ir~~~~~~d~i~va~SGGKDS~vlL~L~~~~~~~~~~~~~~v~~d~~~~~~et~~~~~~-~~~~~~~~~~ 87 (211)
T d1zuna1 9 KQLEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQ-MVEEMGLDLI 87 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHHHHHHHH-HHHTTTCCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHHhhcccccCCeeEEEecCcccchhhHHHHHH-HHHHhCCceE
Confidence 334456667788777767899999999999999999997763 245668999999987765555554 8999999999
Q ss_pred EEECchHH
Q 039743 284 CVDATDQF 291 (531)
Q Consensus 284 vvd~~~~f 291 (531)
+......+
T Consensus 88 ~~~~~~~~ 95 (211)
T d1zuna1 88 THINPDGV 95 (211)
T ss_dssp EECC----
T ss_pred EeechhHH
Confidence 88776544
|
| >d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: beta-Lactam synthetase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.99 E-value=1.8e-06 Score=84.02 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=57.0
Q ss_pred hhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECch
Q 039743 211 DEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATD 289 (531)
Q Consensus 211 ~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~ 289 (531)
+.+.+.++..+..+..+.+.||||+||+++++++++. +.++.++++... ..+|...+.+ +|+.+|++|+.+.++.
T Consensus 19 ~~L~~AV~~rl~~~~~~gv~LSGGlDSs~iaa~~~~~-~~~~~~~s~~~~--~~~e~~~A~~-va~~lg~~h~~~~i~~ 93 (299)
T d1jgta1 19 AALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRA-AGELDTVSMGTD--TSNEFREARA-VVDHLRTRHREITIPT 93 (299)
T ss_dssp HHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHH-HSSCEEEEEECS--SCCCHHHHHH-HHHHHTCEEEEEECCH
T ss_pred HHHHHHHHHHhcCCCCEEEEccCHHHHHHHHHHHHHh-CCCcceeecCcc--chHHHHHHHH-hhhcccccccccceeh
Confidence 3344556666665677889999999999999999886 567888877432 2356667665 8999999999999873
|
| >d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Hypothetical protein PH1257 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.89 E-value=7.7e-06 Score=75.73 Aligned_cols=157 Identities=18% Similarity=0.126 Sum_probs=90.9
Q ss_pred ccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEE-eCC-C---CChhHHHHHHHHHHHhCCCcEEEEECchHHHHhhcCC
Q 039743 224 EDHVICALSGGVDSTVAATLVHKAIGDRLHCVFV-DNG-L---LRYKERERVMDTFEKDLHLPVTCVDATDQFLSKLKGV 298 (531)
Q Consensus 224 ~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~i-d~g-~---~~~~e~~~~~~~la~~lgi~~~vvd~~~~f~~~l~~~ 298 (531)
..+|+|.+|||+||+++++.+.+. |.+|.++.. .+. . +...-..+..+..|+.+|||+..+.....
T Consensus 3 ~~~V~vl~SGGKDS~lAl~~a~~~-G~eV~~L~t~~~~~~~s~~~h~~~~~ll~~qAealgiPl~~~~~~~~-------- 73 (226)
T d2d13a1 3 LADVAVLYSGGKDSNYALYWALKS-GLRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGE-------- 73 (226)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--C--------
T ss_pred ceeEEEEecCcHHHHHHHHHHHHc-CCeeEEEEEEecCCCCcCcccCCCHHHHHHHHHhcCCCceEEecCCc--------
Confidence 568999999999999999999887 999887543 211 1 11111112233467889999987765321
Q ss_pred CCcccccchhhHHHHHHHHHHHHHhhhhcCCCCcEEEecccCCCccccCCCCCCCCCcccccccccccCCCCccccccee
Q 039743 299 IDPETKRKIIGKEFICIFDAFAHDLEQKLGKKPAYLVQGTLYPDVIESCPPPGTGRTHSHTIKSHHNVGGLPKDMKLKLI 378 (531)
Q Consensus 299 ~~p~~kr~~~~~~~~~~~~~~a~~~g~~~~~~~~~l~~Gt~~~D~~es~~~~g~g~~~~~~ikt~~~~~~l~~~~~~~ii 378 (531)
.+ + ..+.+....++.+ .+.++.|.+..+-.. +. +..+....+++.+
T Consensus 74 --~e-------~-~~~~l~~~l~~~~------v~~vv~Gdi~~~~~r----------------~r--~e~~c~~~gl~~~ 119 (226)
T d2d13a1 74 --KE-------K-EVEDLKNVLEGLK------VDGIVAGALASRYQK----------------ER--IENVARELGLKVY 119 (226)
T ss_dssp --TT-------S-HHHHHHHHHHTBC------CSEEECCCSSCHHHH----------------HH--HHHHHHHHTCEEE
T ss_pred --ch-------H-HHHHHHHHHHhcC------ccceEecceecHHHH----------------HH--HHhhHHhcCcEEE
Confidence 11 1 1122344445555 788999987553211 00 0011122356788
Q ss_pred cccccCCHHHHHHHHHHcCCCccccccCCCCCCCccccccCC-CCcchH
Q 039743 379 EPLKLLFKDEVRQLGRILNVPEQFLKRHPFPGPGLAVRVLGD-VTEGNS 426 (531)
Q Consensus 379 ~PL~~l~K~eVr~la~~lglp~~~~~~~P~~~p~la~r~~g~-vt~~~l 426 (531)
.||=.....++-.---..|+..-++.-.+ .+|.-.++|. ++++-+
T Consensus 120 ~PLW~~d~~~ll~e~i~~G~~aii~~v~~---~gL~~~~lGr~id~~~~ 165 (226)
T d2d13a1 120 TPAWEKDPYQYMLEIIKLGFKVVFVAVSA---YGLNESWLGRELNYKNL 165 (226)
T ss_dssp CTTTTCCHHHHHHHHHHTTCEEEEEEECS---TTCCGGGTTCBCCHHHH
T ss_pred ecccCCCHHHHHHHHHHCCCcEEEEEEcc---CCCCHHHcCcCccHHHH
Confidence 99977777776555567888754433322 3466666665 355544
|
| >d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=8.5e-06 Score=75.16 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=65.1
Q ss_pred CCEEEEEeCC----CCc----HHHHHHHHHHCCCEEEEEeCCC---------------------------------Chhc
Q 039743 5 PELVLILDYG----SQY----THLITRRIRSLSILSLCLSGTC---------------------------------SLDD 43 (531)
Q Consensus 5 ~~~I~IlD~G----~~~----~~~i~r~l~~~G~~~~v~~~~~---------------------------------~~~~ 43 (531)
|+||+||=-| +++ .-.....|+++|+++.+...+. ++++
T Consensus 1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~ 80 (217)
T d1vhqa_ 1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ 80 (217)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGG
T ss_pred CCEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHH
Confidence 5788888222 222 2235589999999999876432 2334
Q ss_pred cccCCCCEEEEcCCCCCCCCCC-------CCCC---hHHHHHHHHhCCCcEEEeeHHHHHHHHHcC
Q 039743 44 ITAKNPRVVILSGGPHSVHSPD-------APAF---PAGFLEWALSNGVYVLGICYGLQLMVQKLD 99 (531)
Q Consensus 44 ~~~~~~dgiIlsGGp~s~~~~~-------~~~~---~~~l~~~~~~~~iPvLGIC~G~Qlla~~~G 99 (531)
+...+||+|+||||.+...+-. .... ..++++.+.++++|+-.||.|-++|+.+.+
T Consensus 81 v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~ 146 (217)
T d1vhqa_ 81 ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 146 (217)
T ss_dssp CCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred CCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhc
Confidence 4456799999999987432211 0111 236777788899999999999999999854
|
| >d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: beta-Lactam synthetase species: Pectobacterium carotovorum [TaxId: 554]
Probab=97.84 E-value=3.4e-06 Score=81.88 Aligned_cols=69 Identities=22% Similarity=0.196 Sum_probs=53.4
Q ss_pred hhccccCccceeeccCCCCCHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHhCCCcEEEEECch
Q 039743 217 IKDTVGLEDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMDTFEKDLHLPVTCVDATD 289 (531)
Q Consensus 217 i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~~v~~v~id~g~~~~~e~~~~~~~la~~lgi~~~vvd~~~ 289 (531)
+++....+++|-+.||||+||+++++++++. +.++.++++.... .+|.+.+.+ +|+.+|++|+++.++.
T Consensus 26 v~~~~~~~~~VGv~LSGGlDSslia~~~~~~-~~~~~tfs~~~~~--~~e~~~A~~-va~~l~~~h~~i~~~~ 94 (296)
T d1q15a1 26 LEDLAPRFDTVGIPLSGGLDSSLVTALASRH-FKKLNTYSIGTEL--SNEFEFSQQ-VADALGTHHQMKILSE 94 (296)
T ss_dssp HHHHGGGCSEEEEECCSSHHHHHHHHHHTTT-CSEEEEEEEEETT--BCCHHHHHH-HHHHHTCEEEEEEECH
T ss_pred HHHhccCCCEEEEEccCcHHHHHHHHHHHhc-CCCCceEEeccCC--CchHHHHHH-HHhhccccceEEEeee
Confidence 4444455788999999999999999999885 6788888875432 356666655 8999999999988763
|
| >d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Asparagine synthetase B, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=2.1e-05 Score=77.03 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=56.0
Q ss_pred ccchhhhhhhhhhccccCccceeeccCCCCCHHHHHHHHHHHhCC-------------cEEEEEEeCCCCChhHHHHHHH
Q 039743 206 LENVLDEEVKCIKDTVGLEDHVICALSGGVDSTVAATLVHKAIGD-------------RLHCVFVDNGLLRYKERERVMD 272 (531)
Q Consensus 206 ~~~~~~~~~~~i~~~v~~~~kvvvalSGGvDS~v~a~l~~k~~g~-------------~v~~v~id~g~~~~~e~~~~~~ 272 (531)
.+++.+.+.+.++..+..+-.|.+.||||+||+++|+++++..+. ++.+.+++. -..+|...+.+
T Consensus 16 ~eel~~~l~~sV~~rl~sDvpig~~LSGGlDSs~Iaal~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~e~~~a~~ 93 (324)
T d1ct9a1 16 KNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGL--PGSPDLKAAQE 93 (324)
T ss_dssp HHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEES--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcEEEEecchHHHHHHHHHHHHHHhhcccccccccccCCCcccceecc--CCCchHHHHHH
Confidence 444545555667777665778999999999999999999887442 233444433 22345555554
Q ss_pred HHHHhCCCcEEEEECch
Q 039743 273 TFEKDLHLPVTCVDATD 289 (531)
Q Consensus 273 ~la~~lgi~~~vvd~~~ 289 (531)
+|+.+|.+++.+.++.
T Consensus 94 -~a~~~~~~~~~v~~~~ 109 (324)
T d1ct9a1 94 -VANHLGTVHHEIHFTV 109 (324)
T ss_dssp -HHHHHTCEEEEEECCH
T ss_pred -HHhhccccceEEEEec
Confidence 7889999999998874
|
| >d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Atu0886 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.54 E-value=9.2e-05 Score=66.49 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=60.0
Q ss_pred CCEEEEEe---CCCCcHHHHHHHHHH-CCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCC
Q 039743 5 PELVLILD---YGSQYTHLITRRIRS-LSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPD 65 (531)
Q Consensus 5 ~~~I~IlD---~G~~~~~~i~r~l~~-~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~ 65 (531)
|.||+|+= |-.--....+..+|+ .|+++.++..+.. ++++...++|+||+|||..... ..
T Consensus 1 M~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~~~-~~ 79 (188)
T d2fexa1 1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEK-GT 79 (188)
T ss_dssp CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHH-TC
T ss_pred CCEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCccccc-cc
Confidence 56788872 221112344566765 7999888765421 1222235799999999976322 12
Q ss_pred CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.+. ..++++.+.++++||.+||-|-.+|+.+
T Consensus 80 ~~~-l~~~lr~~~~~~~~i~aiC~g~~~La~a 110 (188)
T d2fexa1 80 AAD-LGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCC-CHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred cHH-HHHHHHHHHHhCCEEEEecchhHHHHHc
Confidence 233 3567788888899999999999999874
|
| >d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein YhbO species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=6.3e-05 Score=66.41 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=58.7
Q ss_pred CEEEEEeC-CCCcHH--HHHHHHHHCCCEEEEEeCCC-----------------ChhccccCCCCEEEEcCCCCCCCCCC
Q 039743 6 ELVLILDY-GSQYTH--LITRRIRSLSILSLCLSGTC-----------------SLDDITAKNPRVVILSGGPHSVHSPD 65 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~--~i~r~l~~~G~~~~v~~~~~-----------------~~~~~~~~~~dgiIlsGGp~s~~~~~ 65 (531)
+||+|+=+ |.+... .....|+++|+++.++.... .++++...+||+||+|||.+..+...
T Consensus 2 KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~~~~l~~ 81 (170)
T d1oi4a1 2 KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRG 81 (170)
T ss_dssp CEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHHTT
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccchhhhhhcc
Confidence 46888833 222222 34578999999887765321 01122234689999999965322111
Q ss_pred CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
. .....+++.+.++++||.+||-|-.+|+.+
T Consensus 82 ~-~~~~~~i~~~~~~~k~i~aiC~g~~~La~~ 112 (170)
T d1oi4a1 82 D-NRFVTFTRDFVNSGKPVFAICHGPQLLISA 112 (170)
T ss_dssp S-HHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred C-hHHHHHHHHHhhcCCeeeecccchHHHhhh
Confidence 1 112367777778899999999999999985
|
| >d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Intracellular protease species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.36 E-value=5.1e-05 Score=66.66 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=59.1
Q ss_pred CEEEEEeC-CCCcHH--HHHHHHHHCCCEEEEEeCCC---------------ChhccccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLILDY-GSQYTH--LITRRIRSLSILSLCLSGTC---------------SLDDITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~--~i~r~l~~~G~~~~v~~~~~---------------~~~~~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
+||+|+=+ |.+... .....|+++|+++.++..+. +++++...++|+||+|||++.......
T Consensus 1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~~~~~~- 79 (166)
T d1g2ia_ 1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLN- 79 (166)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTC-
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccchhhhccC-
Confidence 35777722 322222 23478999999998875432 122222346899999999753211111
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-...+++.+.++++||.+||-|..+|+++
T Consensus 80 ~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 109 (166)
T d1g2ia_ 80 EKAVSIARKMFSEGKPVASICHGPQILISA 109 (166)
T ss_dssp HHHHHHHHHHHHTTCCEEEETTTTHHHHHH
T ss_pred hHHHHHHHHHHhcCCeeeeccccchhhhhc
Confidence 112356677778899999999999999986
|
| >d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: GK2698 ortholog species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.28 E-value=8.9e-05 Score=68.37 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=53.4
Q ss_pred HHHHHHCCCEEEEEeCCC----------------------------ChhccccCCCCEEEEcCCCCCCCCCCCCCChHHH
Q 039743 22 TRRIRSLSILSLCLSGTC----------------------------SLDDITAKNPRVVILSGGPHSVHSPDAPAFPAGF 73 (531)
Q Consensus 22 ~r~l~~~G~~~~v~~~~~----------------------------~~~~~~~~~~dgiIlsGGp~s~~~~~~~~~~~~l 73 (531)
...|+++|+++.+..... .++++...+||+|++|||.+..++-........+
T Consensus 32 ~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~l 111 (221)
T d1u9ca_ 32 YLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYV 111 (221)
T ss_dssp HHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHH
T ss_pred HHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchhhcchhhHHHHHH
Confidence 378999999999876421 0122234679999999998744322111223567
Q ss_pred HHHHHhCCCcEEEeeHHHHHHHH
Q 039743 74 LEWALSNGVYVLGICYGLQLMVQ 96 (531)
Q Consensus 74 ~~~~~~~~iPvLGIC~G~Qlla~ 96 (531)
++.+.++++||-.||.|-++|..
T Consensus 112 i~~~~~~~k~iaAIChgp~~l~~ 134 (221)
T d1u9ca_ 112 LQQFAEDGRIIAAVCHGPSGLVN 134 (221)
T ss_dssp HHHHHHTTCEEEEETTGGGGGTT
T ss_pred HHHHHhccCcceeecccceeeec
Confidence 78888899999999999988875
|
| >d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Escherichia coli, HPII [TaxId: 562]
Probab=97.22 E-value=6.3e-05 Score=65.41 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=59.6
Q ss_pred CCEEEEEeC-CCCcH--HHHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCC
Q 039743 5 PELVLILDY-GSQYT--HLITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDA 66 (531)
Q Consensus 5 ~~~I~IlD~-G~~~~--~~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~ 66 (531)
..||+||=+ |.+.. ....++|++.|+.+.++..+.. .++.....||+||+|||+...... .
T Consensus 3 grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~~~l~~-~ 81 (156)
T d1p80a1 3 GRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIAD-N 81 (156)
T ss_dssp TCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCTHHHHT-C
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEeeCCchHHHhc-c
Confidence 367888833 33332 3466889999999988764431 112223468999999995421110 0
Q ss_pred CCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 67 PAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 67 ~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-...+++.+.++++||-.||-|.++|+.+
T Consensus 82 -~~~~~~i~e~~~~~K~I~aic~g~~~La~a 111 (156)
T d1p80a1 82 -GDANYYLMEAYKHLKPIALAGDARKFKATI 111 (156)
T ss_dssp -HHHHHHHHHHHHTTCCEEEEGGGGGGGGTT
T ss_pred -hHHHHHHHHHHHcCCeEEEECchHHHHHHc
Confidence 111356677778899999999999999765
|
| >d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Neurospora crassa [TaxId: 5141]
Probab=97.14 E-value=9.5e-05 Score=65.82 Aligned_cols=92 Identities=12% Similarity=0.125 Sum_probs=59.9
Q ss_pred CEEEEEeC-CCCc--HHHHHHHHHHCCCEEEEEeCCCC---------------hhccccCCCCEEEEcCCCCCCCCCCCC
Q 039743 6 ELVLILDY-GSQY--THLITRRIRSLSILSLCLSGTCS---------------LDDITAKNPRVVILSGGPHSVHSPDAP 67 (531)
Q Consensus 6 ~~I~IlD~-G~~~--~~~i~r~l~~~G~~~~v~~~~~~---------------~~~~~~~~~dgiIlsGGp~s~~~~~~~ 67 (531)
.||+||=+ |... .......++++|+.++++..+.. .++.....+|+++++||+.........
T Consensus 4 rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~~~~ 83 (184)
T d1sy7a1 4 RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKN 83 (184)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTC
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCCcccccccccccccccccccccccceEEEEeeccccccccccc
Confidence 57888833 3222 22355889999999998764321 111223468999999997532111111
Q ss_pred CChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 68 AFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 68 ~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
.-..++++.+.++++||.+||-|.++|+.+
T Consensus 84 ~~~~~~l~~~~~~~k~i~aic~G~~~La~a 113 (184)
T d1sy7a1 84 GRALHWIREAFGHLKAIGATGEAVDLVAKA 113 (184)
T ss_dssp HHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred cchhHHHHHHHhcCCceEEechHHHHHHHc
Confidence 112356777778899999999999999985
|
| >d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: DJ-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00016 Score=64.61 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=59.1
Q ss_pred CEEEEEeC-CCCcHH--HHHHHHHHCCCEEEEEeCCC--C--------------hhccc-cCCCCEEEEcCCCCCCCCCC
Q 039743 6 ELVLILDY-GSQYTH--LITRRIRSLSILSLCLSGTC--S--------------LDDIT-AKNPRVVILSGGPHSVHSPD 65 (531)
Q Consensus 6 ~~I~IlD~-G~~~~~--~i~r~l~~~G~~~~v~~~~~--~--------------~~~~~-~~~~dgiIlsGGp~s~~~~~ 65 (531)
+||+|+=+ |.+-.. .....|+++|+++.++..+. + +++.. ...||+|++|||...+..-.
T Consensus 2 Kkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l~ 81 (186)
T d1p5fa_ 2 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLS 81 (186)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCcccccccc
Confidence 46777743 332222 34589999999998876432 1 11111 24789999999964221100
Q ss_pred CCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 66 APAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 66 ~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
...-..++++.+.++++||.+||-|..+|+.+
T Consensus 82 ~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~a 113 (186)
T d1p5fa_ 82 ESAAVKEILKEQENRKGLIAAICAGPTALLAH 113 (186)
T ss_dssp HCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred chHHHHHHHHHhhccccceeecccCcchhhhc
Confidence 01112456777788899999999999999985
|
| >d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Ydr533Cp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.79 E-value=0.0005 Score=63.74 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=38.3
Q ss_pred cCCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHH
Q 039743 46 AKNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQK 97 (531)
Q Consensus 46 ~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~ 97 (531)
..+||+|+|+||.+..++-.......++++.+.++++||-.||.|-++|+.+
T Consensus 95 ~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~ 146 (236)
T d1qvwa_ 95 ADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGL 146 (236)
T ss_dssp GGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHH
Confidence 4579999999998753322111223578888889999999999999877653
|
| >d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Protein ThiJ (YajL) species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.0004 Score=62.51 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=54.9
Q ss_pred EEeCCCCcHHH--HHHHHHHCCCEEEEEeCCCC------------------hhccccCCCCEEEEcCCCCCCCCCCCCCC
Q 039743 10 ILDYGSQYTHL--ITRRIRSLSILSLCLSGTCS------------------LDDITAKNPRVVILSGGPHSVHSPDAPAF 69 (531)
Q Consensus 10 IlD~G~~~~~~--i~r~l~~~G~~~~v~~~~~~------------------~~~~~~~~~dgiIlsGGp~s~~~~~~~~~ 69 (531)
+|.-|.+-... -...||++|+++.++..... .+++...++|+||+|||......-.....
T Consensus 7 ~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l~~~~~ 86 (195)
T d2ab0a1 7 CLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTL 86 (195)
T ss_dssp EECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHH
T ss_pred EecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccccccHH
Confidence 34546655443 34788999999887653211 12222467999999999642110000011
Q ss_pred hHHHHHHHHhCCCcEEEeeHH-HHHHHHH
Q 039743 70 PAGFLEWALSNGVYVLGICYG-LQLMVQK 97 (531)
Q Consensus 70 ~~~l~~~~~~~~iPvLGIC~G-~Qlla~~ 97 (531)
..++++.+.++++||.+||-| ..+|+.+
T Consensus 87 l~~~lr~~~~~gk~i~aiC~g~a~lLa~a 115 (195)
T d2ab0a1 87 LVETVKQFHRSGRIVAAICAAPATVLVPH 115 (195)
T ss_dssp HHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred HHHHHHHHhhccceeeeeeccchhhhhhc
Confidence 235677777889999999999 6777764
|
| >d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: HSP31 (HchA; YedU) species: Escherichia coli [TaxId: 562]
Probab=92.28 E-value=0.013 Score=55.11 Aligned_cols=52 Identities=19% Similarity=0.384 Sum_probs=39.5
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHHHHHHc
Q 039743 47 KNPRVVILSGGPHSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQLMVQKL 98 (531)
Q Consensus 47 ~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Qlla~~~ 98 (531)
.+||+|+++||.+..++-.......++++++.++++||..||.|-..|..+.
T Consensus 140 ~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~ 191 (279)
T d1n57a_ 140 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 191 (279)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred ccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcc
Confidence 3799999999988655432222235788889999999999999988876553
|
| >d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: ThuA-like domain: GK2113 homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.27 E-value=2.5 Score=37.73 Aligned_cols=107 Identities=7% Similarity=-0.013 Sum_probs=60.5
Q ss_pred HHHHHHHHCCCEEEEEeCCCChhcc---ccCCCCEEEEcCCC-CCCCCCCCCCChHHHHHHHHhCCCcEEEeeHHHHH--
Q 039743 20 LITRRIRSLSILSLCLSGTCSLDDI---TAKNPRVVILSGGP-HSVHSPDAPAFPAGFLEWALSNGVYVLGICYGLQL-- 93 (531)
Q Consensus 20 ~i~r~l~~~G~~~~v~~~~~~~~~~---~~~~~dgiIlsGGp-~s~~~~~~~~~~~~l~~~~~~~~iPvLGIC~G~Ql-- 93 (531)
.++..|++.|++++....+.+...+ .+.++|.||+.+-. .....+ . ..+.+....++|.+++|+=.|+--
T Consensus 31 ~ia~~l~~~g~~v~tat~~e~~~~~~~~~L~~~Dvli~~~~~~~~~l~~---~-q~~al~~~v~~G~G~VglH~a~~~~~ 106 (240)
T d1t0ba_ 31 VIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDEVKD---E-VVERVHRRVLEGMGLIVLHSGHFSKI 106 (240)
T ss_dssp HHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGGSCH---H-HHHHHHHHHHTTCEEEEEGGGGGSHH
T ss_pred HHHHHhhcCCceEEEEEecCccccCCHHHHhcCCEEEEeCCCCCCcCCH---H-HHHHHHHHHHcCCCEEEEecCcCCCc
Confidence 6778889999999876555543322 15789999986532 111111 1 223445556779999998655321
Q ss_pred HHHHcCCEEeecCcccceeeeEEEe-cCCccccCCCCC
Q 039743 94 MVQKLDGVVKVGEKQEYGRMEILVE-RSSGIFGNKKVG 130 (531)
Q Consensus 94 la~~~GG~v~~~~~~e~G~~~v~~~-~~~~l~~~~~~~ 130 (531)
-...+||...-...+......+.+. ++.|+.+++++.
T Consensus 107 ~~~~~Gg~~~~~~h~~~~~~~v~v~d~~HPi~~gl~~~ 144 (240)
T d1t0ba_ 107 FKKLMGTTCNLKWREADEKERLWVVAPGHPIVEGIGPY 144 (240)
T ss_dssp HHHHHCSCCCCEEEEEEEEEEEEESCTTSGGGTTCCSE
T ss_pred hHHHhCCccccccCCCCcEEEEEecCCCChhHcCCCCc
Confidence 1123454222111122233445444 467999999875
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=91.08 E-value=0.3 Score=37.09 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=49.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHCCCEEEEEeCCCChh---ccc--------------cCCCCEEEEcCCCCCCCCCCCCC
Q 039743 6 ELVLILDYGSQYTHLITRRIRSLSILSLCLSGTCSLD---DIT--------------AKNPRVVILSGGPHSVHSPDAPA 68 (531)
Q Consensus 6 ~~I~IlD~G~~~~~~i~r~l~~~G~~~~v~~~~~~~~---~~~--------------~~~~dgiIlsGGp~s~~~~~~~~ 68 (531)
.+|+|+-+|.+ -.+++++|.+.|..+.+.......+ .+. ..++|.+|+|.|-. .
T Consensus 6 K~v~ViGlG~s-G~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi~----~---- 76 (93)
T d2jfga1 6 KNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIA----L---- 76 (93)
T ss_dssp CCEEEECCSHH-HHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTSC----T----
T ss_pred CEEEEEeECHH-HHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCCC----C----
Confidence 36999988864 4478999999999998876432211 110 13468888887742 1
Q ss_pred ChHHHHHHHHhCCCcEEE
Q 039743 69 FPAGFLEWALSNGVYVLG 86 (531)
Q Consensus 69 ~~~~l~~~~~~~~iPvLG 86 (531)
...+++.+.++++||.|
T Consensus 77 -~~~~~~~a~~~gi~iiG 93 (93)
T d2jfga1 77 -AHPSLSAAADAGIEIVG 93 (93)
T ss_dssp -TSHHHHHHHHTTCEEEC
T ss_pred -CCHHHHHHHHcCCCeEC
Confidence 23577888999999987
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=84.87 E-value=1.3 Score=36.30 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=43.0
Q ss_pred CEEEEEeCCCCc--HHHHH----HHHHHCCCEEEEEeCCC-Chhccc--cCCCCEEEEcCCCCCCCCCCCCCChHHHHHH
Q 039743 6 ELVLILDYGSQY--THLIT----RRIRSLSILSLCLSGTC-SLDDIT--AKNPRVVILSGGPHSVHSPDAPAFPAGFLEW 76 (531)
Q Consensus 6 ~~I~IlD~G~~~--~~~i~----r~l~~~G~~~~v~~~~~-~~~~~~--~~~~dgiIlsGGp~s~~~~~~~~~~~~l~~~ 76 (531)
.|++|+ |+|++ +..+| +.+++.|+.++++.... +.+++. ..++|+||| |.|. |....+......++.
T Consensus 3 ~K~lIv-Y~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspt--~~g~~~~~~~~~l~~ 78 (149)
T d1ycga1 3 AKAVIA-YDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLV-GSPT--INNDILPVVSPLLDD 78 (149)
T ss_dssp SEEEEE-ECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEE-ECCC--BTTBCCGGGHHHHHH
T ss_pred cEEEEE-EECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchHHHhhhhhhCCeEEE-Eeec--ccCCCCHHHHHHHHH
Confidence 468888 55544 55554 55557899999887543 333432 346899887 5553 333222223445554
Q ss_pred HHh---CCCcEEEe
Q 039743 77 ALS---NGVYVLGI 87 (531)
Q Consensus 77 ~~~---~~iPvLGI 87 (531)
... .++|+.-+
T Consensus 79 l~~~~~~~k~~~~f 92 (149)
T d1ycga1 79 LVGLRPKNKVGLAF 92 (149)
T ss_dssp HHHHCCSSCEEEEE
T ss_pred HhccccCCCEEEEE
Confidence 433 24555433
|