Citrus Sinensis ID: 039773

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MASALESLCGKAFGAKKYYMLGVYMQRSSIENFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGFWEFIKLSAASGVMLLWDTLILMIGNLNNSGTALDALSI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEHcc
Coil and Loop (DISEMBL)
MASALESLCGKAFGAKKYYMLGVYMQRSSIenfayqfpperflQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFgyvacggcpltwtGFWEFIKLSAASGVMLLWDTLILMIGNlnnsgtaldalsi
Flexible Loop (DISEMBL)
MASALESLCGKAFGAKKYYMLGVYMQRSSIENFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGFWEFIKLSAASGVMLLWDTLILMIGNLnnsgtaldalsi
Low Complexity Region (SEG)
MASALESLCGKAFGAKKYYMLGVYMQRSSIENFAYQFPPERFLQCQLKNMVIAWVSlvalllhillswllVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGFWEFIKLSAASGVMLLWDTLILMIGNLNNSGTALDALSI
Disordered region (IsUnstruct)
*******LCGKAFGAKKYYMLGVYMQRSSIENFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGFWEFIKLSAASGVMLLWDTLILMIGNLNN**********
Disordered Region (DISOPRED)
*ASALESLCGKAFGAKKYYMLGVYMQRSSIENFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGFWEFIKLSAASGVMLLWDTLILMIGNLNNSGTALDALSI
Disordered Region (DISEMBL)
MASALESLCGKAFGAKKYYMLGVYMQRSSIENFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGFWEFIKLSAASGVMLLWDTLILMIGNLNNSGTALDALSI
Disordered Region (DISPRO)
**SALESLCGKAFGAKKYYMLGVYMQRSSIENFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGFWEFIKLSAASGVMLLWDTLILMIGNLNNSGTALDALSI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASALESLCGKAFGAKKYYMLGVYMQRSSIENFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGFWEFIKLSAASGVMLLWDTLILMIGNLNNSGTALDALSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.993	0.293	0.325	6e-18
Q9LUH2	477	MATE efflux family protei	no	no	0.746	0.234	0.305	1e-08
Q9LUH3	469	MATE efflux family protei	no	no	0.746	0.238	0.286	4e-06
Q8RWF5	483	MATE efflux family protei	no	no	0.666	0.207	0.270	1e-05
Q9SIA1	477	MATE efflux family protei	no	no	0.666	0.209	0.263	3e-05
Q9UT92	533	Uncharacterized transport	yes	no	0.733	0.206	0.262	0.0002
Q9SIA5	476	MATE efflux family protei	no	no	1.0	0.315	0.25	0.0005
P38767	581	Ethionine resistance-conf	yes	no	0.66	0.170	0.253	0.0005

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 102/209 (48%), Gaps = 60/209 (28%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRS-------------------------------- 28
           MASA++++CG+A+GA++Y  +G+  QR+                                
Sbjct: 109 MASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIA 168

Query: 29  ------------SIENFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                        I  FA   P +RFLQ Q     +A++SL   LLH LL+WL+   + F
Sbjct: 169 HEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDF 228

Query: 77  GVIGTAISLNFPWWLLVL--GLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML 126
           G++G A+ L+F WWLLV   G++  +    C  TWTGF        W + KL+ AS VML
Sbjct: 229 GLLGAALILSFSWWLLVAVNGMY-ILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVML 287

Query: 127 ---LW--DTLILMIGNLNNSGTALDALSI 150
              +W    L+++ G L+N   +LDA+SI
Sbjct: 288 CLEIWYNQGLVIISGLLSNPTISLDAISI 316

May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 45/157 (28%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIENFA-------------------------- 34
           ++ +LE+LCG+ FGAK+Y MLGV++Q S I +                            
Sbjct: 97  LSGSLETLCGQGFGAKRYRMLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSIS 156

Query: 35  --------YQFP---PERFLQ-----CQLKNMVIAWV--SLVALLLHILLSWLLVYRVQF 76
                   YQ P      FLQ     CQ ++++   V  S V L+++I  +++LVY    
Sbjct: 157 KQAALYMKYQAPGLLAYGFLQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGL 216

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACG-GCPLTWTGF 112
           G IG  I+ +   W+  L L  YV C      TWTGF
Sbjct: 217 GFIGAPIATSISLWIAFLSLGTYVMCSEKFKETWTGF 253

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 45/157 (28%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIENFAY-------------------QFPPER 41
           ++ ALE+LCG+ FGAK Y MLG+++Q S I +  +                   Q P   
Sbjct: 89  LSGALETLCGQGFGAKSYRMLGIHLQSSCIVSLVFTILITILWFFTESVFLLLRQDPSIS 148

Query: 42  ------------------FLQ-----CQLKNMVIAWV--SLVALLLHILLSWLLVYRVQF 76
                             FLQ     CQ + +V   V  S + L+++I  ++ LV+    
Sbjct: 149 KQAALYMKYLAPGLLAYGFLQNILRFCQTQCIVTPLVLFSFLPLVINIGTTYALVHLAGL 208

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGC-PLTWTGF 112
           G IG  I+ +   W+  + L  YV C      TWTGF
Sbjct: 209 GFIGAPIATSISLWIAFVSLGFYVICSDKFKETWTGF 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 44/144 (30%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIENF--------------------------- 33
           +A ALE+LCG+A+GAK+Y  +G Y   + + N                            
Sbjct: 88  LAGALETLCGQAYGAKQYAKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDIS 147

Query: 34  -----------------AYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                            A Q P  RFLQ Q   + + + ++  LL HI +  +LVY    
Sbjct: 148 KVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGL 207

Query: 77  GVIGTAISLNFPWWLLVLGLFGYV 100
           G  G A+++   +W  VL L  YV
Sbjct: 208 GSNGAALAIGLSYWFNVLILALYV 231

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 44/144 (30%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIENF--------------------------- 33
           +  ALE+LCG+A+GAK+Y  +G Y   + + N                            
Sbjct: 88  LVGALETLCGQAYGAKQYTKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDIS 147

Query: 34  -----------------AYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                            A Q P  RFLQ Q   + + + ++  LL HI +  +LVY    
Sbjct: 148 KVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGL 207

Query: 77  GVIGTAISLNFPWWLLVLGLFGYV 100
           G  G A+++   +W  VL L  YV
Sbjct: 208 GSNGAALAIGLSYWFNVLILALYV 231

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UT92|YL47_SCHPO Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC323.07c PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 46/156 (29%)

Query: 3   SALESLCGKAFGAKKYYMLGVYMQRS----------------SIEN---FAYQFP----- 38
           S+L++L  +AFGA K Y + +Y+QR                 ++E+   F +Q P     
Sbjct: 150 SSLDTLATQAFGANKPYNVAIYLQRCLLILAVLHIPVALIWLNLEHILIFLHQDPMVAHL 209

Query: 39  ------------P--------ERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR--VQF 76
                       P        +R+LQ Q     I +V   A  L+ILL++LLV+   + F
Sbjct: 210 CGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPITYVLCFAAPLNILLNYLLVWHPTIGF 269

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF 112
           G +G  +++   +W   + L  Y+     P+ W GF
Sbjct: 270 GFLGAPVAVATTFWFQSICLILYICFSSTPIPWPGF 305

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 76/208 (36%), Gaps = 58/208 (27%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYM-----------------------------QRSSIE 31
           +  ALE+LCG+A+GAK+Y  +G Y                              Q   I 
Sbjct: 85  LVGALETLCGQAYGAKQYEKIGTYAYSAIASNIPICFLISILWLYIEKILISLGQDPEIS 144

Query: 32  NFA--YQF-------------PPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
             A  Y F             P  RFL  Q   + + + ++  LL H+L+ W LV+    
Sbjct: 145 RIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVFLFGL 204

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF---------WEFIKLSAASGVML- 126
           G  G A++ +  +W   + L  YV          GF          +F +    S  M+ 
Sbjct: 205 GCNGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGFVSRDFVSSIKQFFQYGIPSAAMIC 264

Query: 127 ----LWDTLILMIGNLNNSGTALDALSI 150
               L++ LIL  G L N       LSI
Sbjct: 265 LEWWLFEILILCSGLLPNPKLETSVLSI 292

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|P38767|ERC1_YEAST Ethionine resistance-conferring protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERC1 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 47/146 (32%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIENFAYQFP-----------------PER-- 41
           + + L++LC +A+GAK Y+++GV +QR ++       P                 PER  
Sbjct: 222 LCTCLDTLCAQAYGAKNYHLVGVLVQRCAVITILAFLPMMYVWFVWSEKILALMIPEREL 281

Query: 42  --------------------------FLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQ 75
                                     FLQCQ        V  V   L+ L+++LLV+  +
Sbjct: 282 CALAANYLRVTAFGVPGFILFECGKRFLQCQGIFHASTIVLFVCAPLNALMNYLLVWNDK 341

Query: 76  FGV--IGTAISLNFPWWLLVLGLFGY 99
            G+  +G  +S+   +WL+ LGL  Y
Sbjct: 342 IGIGYLGAPLSVVINYWLMTLGLLIY 367

Probable transporter involved in ethionine resistance. Overproduction leads to accumulation of S-adenosylmethionine.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
224097194	488	predicted protein [Populus trichocarpa]	1.0	0.307	0.545	9e-49
302142014	521	unnamed protein product [Vitis vinifera]	1.0	0.287	0.497	5e-46
359492469	490	PREDICTED: protein TRANSPARENT TESTA 12-	1.0	0.306	0.497	6e-46
356497726	491	PREDICTED: protein TRANSPARENT TESTA 12-	1.0	0.305	0.507	4e-45
255586693	482	multidrug resistance pump, putative [Ric	1.0	0.311	0.516	8e-45
255586695	507	multidrug resistance pump, putative [Ric	1.0	0.295	0.507	1e-44
357485623	490	Protein TRANSPARENT TESTA [Medicago trun	1.0	0.306	0.516	3e-43
224067013	492	predicted protein [Populus trichocarpa]	1.0	0.304	0.478	2e-40
218192227	490	hypothetical protein OsI_10313 [Oryza sa	1.0	0.306	0.468	4e-39
350534468	447	ripening regulated protein DDTFR18 [Sola	1.0	0.335	0.454	4e-39

>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 113/207 (54%), Positives = 129/207 (62%), Gaps = 57/207 (27%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIE----------------------------- 31
           MASALE+LCG+AFGAKKYYMLGVYMQRS I                              
Sbjct: 98  MASALETLCGQAFGAKKYYMLGVYMQRSWIVLFLCCILLLPLYLFASPVLKLLGQPNDIA 157

Query: 32  ---------------NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                          +FA+QFP +RFLQ QLKNMVIAWVS VAL++HI +SWLLVY++Q 
Sbjct: 158 ELSGKAAVWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSFVALVVHIFVSWLLVYKLQL 217

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML-- 126
           GV GTA++LNF WW+LV GL GY  CGGCPLTWTGF        WEF KLSAASGVML  
Sbjct: 218 GVAGTAMTLNFSWWVLVFGLLGYTICGGCPLTWTGFSTEAFSGLWEFTKLSAASGVMLCL 277

Query: 127 ---LWDTLILMIGNLNNSGTALDALSI 150
               +  LILM GNL N+  A+DALSI
Sbjct: 278 ENWYYRILILMTGNLKNAEIAVDALSI 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142014|emb|CBI19217.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 103/207 (49%), Positives = 127/207 (61%), Gaps = 57/207 (27%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIE----------------------------- 31
           MASALE+LCG+AFGAKKY+MLG+YMQRS I                              
Sbjct: 126 MASALETLCGQAFGAKKYHMLGIYMQRSWIVLFLCCFLLLPFYVFATPLLKLLGQPDDVA 185

Query: 32  ---------------NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                          +FA+QFP +RFLQ QLK  VIAWVSLVA ++H+ +SWL VY+++F
Sbjct: 186 EQSGLVALCLIPLHFSFAFQFPLQRFLQSQLKTGVIAWVSLVAFVIHVFISWLFVYKLEF 245

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML-- 126
           G+IGTAI+LNF WW+LV G+ GY  CGGCPL+WTGF        WEF+KLS ASGVML  
Sbjct: 246 GIIGTAITLNFSWWILVFGMLGYTVCGGCPLSWTGFSMQAFSGLWEFVKLSTASGVMLCL 305

Query: 127 ---LWDTLILMIGNLNNSGTALDALSI 150
               +  LILM GN  N+  A+DALS+
Sbjct: 306 ENWYYRILILMTGNWKNAEVAVDALSV 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 103/207 (49%), Positives = 127/207 (61%), Gaps = 57/207 (27%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIE----------------------------- 31
           MASALE+LCG+AFGAKKY+MLG+YMQRS I                              
Sbjct: 95  MASALETLCGQAFGAKKYHMLGIYMQRSWIVLFLCCFLLLPFYVFATPLLKLLGQPDDVA 154

Query: 32  ---------------NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                          +FA+QFP +RFLQ QLK  VIAWVSLVA ++H+ +SWL VY+++F
Sbjct: 155 EQSGLVALCLIPLHFSFAFQFPLQRFLQSQLKTGVIAWVSLVAFVIHVFISWLFVYKLEF 214

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML-- 126
           G+IGTAI+LNF WW+LV G+ GY  CGGCPL+WTGF        WEF+KLS ASGVML  
Sbjct: 215 GIIGTAITLNFSWWILVFGMLGYTVCGGCPLSWTGFSMQAFSGLWEFVKLSTASGVMLCL 274

Query: 127 ---LWDTLILMIGNLNNSGTALDALSI 150
               +  LILM GN  N+  A+DALS+
Sbjct: 275 ENWYYRILILMTGNWKNAEVAVDALSV 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/207 (50%), Positives = 127/207 (61%), Gaps = 57/207 (27%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIE----------------------------- 31
           MASALE+LCG+AFGAKKYYMLGVYMQRS I                              
Sbjct: 97  MASALETLCGQAFGAKKYYMLGVYMQRSWIVLFICCIFLLPLYLFASPVLKLLGQPEELA 156

Query: 32  ---------------NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                           FA+QFP +RFLQCQLK   IAWVSLVAL++H+ +SWL V+++QF
Sbjct: 157 ELSGAVSIWMIPVHFAFAFQFPLQRFLQCQLKTAPIAWVSLVALVVHVFVSWLFVFKLQF 216

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML-- 126
           GV+G A ++NF WW+L LGLFGYV  GGCP TW+GF        WEF+KLSAA+GVML  
Sbjct: 217 GVVGAAATINFSWWVLTLGLFGYVVWGGCPHTWSGFSVEAFSGLWEFLKLSAAAGVMLCL 276

Query: 127 ---LWDTLILMIGNLNNSGTALDALSI 150
               +  LI+M GNL N+  A+DALSI
Sbjct: 277 ENWYYKILIVMTGNLENAEIAVDALSI 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586693|ref|XP_002533972.1| multidrug resistance pump, putative [Ricinus communis] gi|223526044|gb|EEF28410.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 107/207 (51%), Positives = 125/207 (60%), Gaps = 57/207 (27%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIE----------------------------- 31
           MASALE+LCG+AFGAKKYYMLGVYMQRS I                              
Sbjct: 92  MASALETLCGQAFGAKKYYMLGVYMQRSWIVLFLCCVLLLPLYLFASPFLKLLGQPNDVA 151

Query: 32  ---------------NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                          +FA+QFP +RFLQ QLKN VIA ++ V L++H+++SWLLVYR Q 
Sbjct: 152 ELSGIVSIYMIPLHFSFAFQFPLQRFLQSQLKNTVIALITFVGLVVHVIVSWLLVYRFQL 211

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML-- 126
           GVIGTA++LNF WW+LV G  GYV  GGCPLTW GF        WEF KLSAASGVML  
Sbjct: 212 GVIGTAMTLNFSWWVLVFGHLGYVIFGGCPLTWKGFSTEAFSGLWEFTKLSAASGVMLCL 271

Query: 127 ---LWDTLILMIGNLNNSGTALDALSI 150
               +  LILM GNL N+  A+DALSI
Sbjct: 272 ENWYYRILILMTGNLKNAEIAVDALSI 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586695|ref|XP_002533973.1| multidrug resistance pump, putative [Ricinus communis] gi|223526045|gb|EEF28411.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/207 (50%), Positives = 125/207 (60%), Gaps = 57/207 (27%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIE----------------------------- 31
           MASALE+LCG+AFGAKKYYMLGVYMQRS I                              
Sbjct: 92  MASALETLCGQAFGAKKYYMLGVYMQRSWIVLFLCCVLLLPLYLFASPVLTLLGQPKDVA 151

Query: 32  ---------------NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                          +FA+QFP +RFLQCQLKN V A +SLVAL +H+++SWL VY++  
Sbjct: 152 ELSGVVSIYLIPLHFSFAFQFPLQRFLQCQLKNTVTALISLVALAVHVIVSWLFVYKLHL 211

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML-- 126
           GVIGTA++LNF WW+LV G  GY+  GGCPLTW GF        W+F KLSAASGVML  
Sbjct: 212 GVIGTAMTLNFSWWVLVFGHLGYIIFGGCPLTWNGFSIEAFSGLWDFTKLSAASGVMLCL 271

Query: 127 ---LWDTLILMIGNLNNSGTALDALSI 150
               +  LILM GNL N+  A+DALSI
Sbjct: 272 ENWYYRILILMTGNLKNAKIAVDALSI 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485623|ref|XP_003613099.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355514434|gb|AES96057.1| Protein TRANSPARENT TESTA [Medicago truncatula]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/207 (51%), Positives = 123/207 (59%), Gaps = 57/207 (27%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSI--------------------------EN-- 32
           MASALE+LCG+A+GAK+YYMLGVYMQRS I                          E+  
Sbjct: 95  MASALETLCGQAYGAKQYYMLGVYMQRSWIVLFICCIFLLPIYLFATPVLRLLGQPEDLA 154

Query: 33  ----------------FAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                           FA+QFP  RFLQ QLK   IAWVSL ALL+HI +SWL V++ QF
Sbjct: 155 VLSGQVSMWMIPLHFAFAFQFPLNRFLQSQLKTAAIAWVSLFALLVHIFVSWLFVFKFQF 214

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML-- 126
           GVIGTA +LNF WW L +GLF Y   GGCPLTW GF        WEF+KLSAASGVML  
Sbjct: 215 GVIGTAATLNFSWWALTVGLFCYTVYGGCPLTWNGFSMEAFSGLWEFVKLSAASGVMLCL 274

Query: 127 ---LWDTLILMIGNLNNSGTALDALSI 150
               +  LILM GNL N+  A+DALSI
Sbjct: 275 ENWYYRILILMTGNLPNAEIAVDALSI 301

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067013|ref|XP_002302326.1| predicted protein [Populus trichocarpa] gi|222844052|gb|EEE81599.1| predicted protein [Populus trichocarpa]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/207 (47%), Positives = 124/207 (59%), Gaps = 57/207 (27%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIE----------------------------- 31
           MASALE+LCG+AFGAK+Y+MLG+YMQRS I                              
Sbjct: 98  MASALETLCGQAFGAKRYHMLGIYMQRSWIVLFFCCFLLLPFYVFAAPLLKFLGQPDDVA 157

Query: 32  ---------------NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                          +FA+QFP +RFLQ QLKN VIAW+SL +L +++L SWLLVY + F
Sbjct: 158 EQSGLVALWLIPLHFSFAFQFPLQRFLQSQLKNQVIAWISLASLGVNVLTSWLLVYVLDF 217

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVMLLW 128
           GVIG AI+L+  WW++V+GLF Y +CG CP TWTGF        WEF+KLSAASGVML  
Sbjct: 218 GVIGAAIALDISWWVIVIGLFIYTSCGWCPSTWTGFSAQAFCGLWEFVKLSAASGVMLCL 277

Query: 129 DT-----LILMIGNLNNSGTALDALSI 150
           +      LILM G   N+  A+DALS+
Sbjct: 278 ENWYYRILILMTGYFKNATLAVDALSV 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218192227|gb|EEC74654.1| hypothetical protein OsI_10313 [Oryza sativa Indica Group]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/207 (46%), Positives = 118/207 (57%), Gaps = 57/207 (27%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIE----------------------------- 31
           MASALE+LCG+AFGAKKY+M+GVYMQRS I                              
Sbjct: 101 MASALETLCGQAFGAKKYHMMGVYMQRSWIVLLSCALLLLPMYIYAEDVLLLTGQPPELS 160

Query: 32  ---------------NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                          +FA+ FP +RFLQCQ+KN   A  S VAL +H+ +SWLLV R +F
Sbjct: 161 AMAGRVSVWFIPLHLSFAFLFPLQRFLQCQMKNFASAAASGVALCVHVAISWLLVSRFRF 220

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWT--------GFWEFIKLSAASGVMLLW 128
           G++G A++LNF WW     LF YVACGGCP TW         G WEF+KLSAASGVML  
Sbjct: 221 GLVGIALTLNFSWWATAAMLFAYVACGGCPETWNGLSLEAFAGLWEFVKLSAASGVMLCL 280

Query: 129 DT-----LILMIGNLNNSGTALDALSI 150
           +      LIL+ GNL N+  A+DALSI
Sbjct: 281 ENWYYRILILLTGNLKNAAIAVDALSI 307

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534468|ref|NP_001234398.1| ripening regulated protein DDTFR18 [Solanum lycopersicum] gi|12231296|gb|AAG49032.1|AF204785_1 ripening regulated protein DDTFR18 [Solanum lycopersicum]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 122/207 (58%), Gaps = 57/207 (27%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIE----------------------------- 31
           MASALE+LCG+A+GAKK++MLG+YMQRS I                              
Sbjct: 87  MASALETLCGQAYGAKKHHMLGIYMQRSWIVLTLCCFLLLPMYIYATPILKSLGQPDDVA 146

Query: 32  ---------------NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                          +FA+QFP +RFLQ QLK +VIAW+SL  L +H ++SWL VY++  
Sbjct: 147 ELSGIVALWFIPLHFSFAFQFPIQRFLQSQLKTVVIAWISLAVLAIHTVISWLFVYKLNL 206

Query: 77  GVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML-- 126
           G++G A++L+  WWLLV+G+F Y ACGGCP TWTGF         EF +LSAA+GVML  
Sbjct: 207 GLVGAAVALDISWWLLVVGMFMYAACGGCPETWTGFSAQAFSGLCEFFRLSAAAGVMLCL 266

Query: 127 ---LWDTLILMIGNLNNSGTALDALSI 150
               +  L+LM G L N+  ALDALSI
Sbjct: 267 ENWYYRILMLMTGYLENATLALDALSI 293

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2168210	486	AT5G65380 "AT5G65380" [Arabido	0.786	0.242	0.458	1.2e-34
TAIR|locus:2172477	491	AT5G44050 "AT5G44050" [Arabido	0.793	0.242	0.477	3.6e-34
TAIR|locus:2142544	489	AT5G10420 [Arabidopsis thalian	0.786	0.241	0.473	4.3e-32
TAIR|locus:2089955	506	AT3G21690 "AT3G21690" [Arabido	0.866	0.256	0.354	1.8e-23
TAIR|locus:2037960	494	AT1G33080 "AT1G33080" [Arabido	0.793	0.240	0.363	1.8e-23
TAIR|locus:2206960	494	AT1G33110 "AT1G33110" [Arabido	0.793	0.240	0.365	2.8e-23
TAIR|locus:2144421	498	AT5G38030 "AT5G38030" [Arabido	0.866	0.261	0.333	5.4e-22
TAIR|locus:2015368	484	AT1G47530 "AT1G47530" [Arabido	0.786	0.243	0.353	1.2e-21
TAIR|locus:2037980	494	AT1G33090 "AT1G33090" [Arabido	0.793	0.240	0.358	2.4e-21
TAIR|locus:2036848	501	AT1G61890 "AT1G61890" [Arabido	0.853	0.255	0.330	2.5e-21

TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
 Identities = 60/131 (45%), Positives = 76/131 (58%)

Query:    33 FAYQFPPERFLQCQLKNMVIAWVSXXXXXXXXXXXXXXVYRVQFGVIGTAISLNFPWWLL 92
             F   FP +RFLQCQLKN V A+ +              V  ++ GV+GT  +++  WW+ 
Sbjct:   171 FTLSFPLQRFLQCQLKNRVTAYAAAVALVVHILVCWLFVDGLKLGVVGTVATISISWWVN 230

Query:    93 VLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVMLL---W--DTLILMIGNLN 139
             VL L  Y  CGGCPLTWTG         WEF+KLSA+SGVML    W    LI+M GNL 
Sbjct:   231 VLILLVYSTCGGCPLTWTGLSSEALTGLWEFLKLSASSGVMLCLENWYYRILIIMTGNLQ 290

Query:   140 NSGTALDALSI 150
             N+  A+D+LSI
Sbjct:   291 NARIAVDSLSI 301

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.6e-34, Sum P(2) = 3.6e-34
 Identities = 63/132 (47%), Positives = 77/132 (58%)

Query:    32 NFAYQFPPERFLQCQLKNMVIAWVSXXXXXXXXXXXXXXVYRVQFGVIGTAISLNFPWWL 91
             +FA+ FP  RFLQCQLKN VIA  S              VY ++ GVIGT  + N  WWL
Sbjct:   173 SFAFFFPINRFLQCQLKNSVIAISSGVSLVVHIFVCWLFVYVLELGVIGTIATANVSWWL 232

Query:    92 LVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVMLL---W--DTLILMIGNL 138
              V  LF Y  CGGCPLTWTGF        WEF KLSA+SG+M+    W    LI+M GNL
Sbjct:   233 NVFILFTYTTCGGCPLTWTGFSMESFTRLWEFTKLSASSGIMVCLENWYYRMLIVMTGNL 292

Query:   139 NNSGTALDALSI 150
              ++   +D++SI
Sbjct:   293 EDARIDVDSMSI 304

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 62/131 (47%), Positives = 74/131 (56%)

Query:    33 FAYQFPPERFLQCQLKNMVIAWVSXXXXXXXXXXXXXXVYRVQFGVIGTAISLNFPWWLL 92
             FA+ FP  RFLQCQLKN VIA  +              VY  + G+IGT  S+N PWWL 
Sbjct:   172 FAFFFPLNRFLQCQLKNKVIAISAGVSLAVHILVCWFFVYGYKLGIIGTMASVNVPWWLN 231

Query:    93 VLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVMLL---W--DTLILMIGNLN 139
             +  LF Y   GGC LTWTGF         E  KLSA+SG+ML    W    L+LM GNL 
Sbjct:   232 IFILFLYSTRGGCTLTWTGFSSEAFTGLLELTKLSASSGIMLCLENWYYKILMLMTGNLV 291

Query:   140 NSGTALDALSI 150
             N+  A+D+LSI
Sbjct:   292 NAKIAVDSLSI 302

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
 Identities = 51/144 (35%), Positives = 71/144 (49%)

Query:    21 LGVYMQRSSIENFAYQFPPERFLQCQLKNMVIAWVSXXXXXXXXXXXXXXVYRVQFGVIG 80
             L VY     I  +A  FP ++FLQ Q      A++S              VY++  G++G
Sbjct:   174 LFVYGLIPQIFAYAANFPIQKFLQSQSIVAPSAYISTATLFVHLLLSWLAVYKLGMGLLG 233

Query:    81 TAISLNFPWWLLVLGLFGYVACGG-CPLTWTGF--------WEFIKLSAASGVMLLWDT- 130
              ++ L+  WW++V+  F Y+     C  TW GF        W F KLSAAS VML  +T 
Sbjct:   234 ASLVLSLSWWIIVVAQFVYIVTSERCRETWRGFSVQAFSGLWSFFKLSAASAVMLCLETW 293

Query:   131 ----LILMIGNLNNSGTALDALSI 150
                 L+L+ G L N   ALD+LSI
Sbjct:   294 YFQILVLLAGLLENPELALDSLSI 317

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
 Identities = 48/132 (36%), Positives = 62/132 (46%)

Query:    32 NFAYQFPPERFLQCQLKNMVIAWVSXXXXXXXXXXXXXXVYRVQFGVIGTAISLNFPWWL 91
             +F   F  + FLQ Q KN +IA+V+              V    FG+ G   S     WL
Sbjct:   169 SFVPSFTCQMFLQAQSKNKIIAYVAAVSLGVHVFLSWLLVVHFDFGIAGAMTSSLVAHWL 228

Query:    92 LVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML---LW--DTLILMIGNL 138
               +    +V CGGC  TW GF        W   KLS +SG M+   LW    LIL+ GNL
Sbjct:   229 PNIAQVLFVTCGGCTETWRGFSWLAFKDLWPVFKLSVSSGGMICLELWYNSILILLTGNL 288

Query:   139 NNSGTALDALSI 150
              N+  AL+AL+I
Sbjct:   289 KNAEVALNALAI 300

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
 Identities = 49/134 (36%), Positives = 65/134 (48%)

Query:    32 NFAY--QFPPERFLQCQLKNMVIAWVSXXXXXXXXXXXXXXVYRVQFGVIGTAISLNFPW 89
             NF++   F  + FLQ Q KN +IA+V+              +    FG+ G   S    +
Sbjct:   167 NFSFVPSFTCQMFLQAQSKNKIIAYVAAVSLGVHVFLSWLLMVHFNFGITGAMTSTLVAF 226

Query:    90 WLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML---LW--DTLILMIG 136
             WL  +    +V CGGC  TW GF        W   KLS +SG ML   LW    L+L+ G
Sbjct:   227 WLPNIAQLLFVTCGGCKDTWRGFSMMAFKDLWPVFKLSMSSGGMLCLELWYNSILVLLTG 286

Query:   137 NLNNSGTALDALSI 150
             NL N+  ALDAL+I
Sbjct:   287 NLKNAEVALDALAI 300

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 5.4e-22, Sum P(2) = 5.4e-22
 Identities = 48/144 (33%), Positives = 70/144 (48%)

Query:    20 MLGVYMQRSSIENFAYQFPPERFLQCQLKNMVIAWVSXXXXXXXXXXXXXXVYRVQFGVI 79
             +  +YM    I  +A  +P  +FLQ Q K MV+A +S              +  +Q+G  
Sbjct:   167 IFSIYMI-PQIFAYAVNYPTAKFLQSQSKIMVMAAISAVALVLHVLLTWFVIEGLQWGTA 225

Query:    80 GTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML---LW 128
             G A+ LN  WW +V+    Y+  G C   W+GF        W F++LS AS VML   +W
Sbjct:   226 GLAVVLNASWWFIVVAQLVYIFSGTCGEAWSGFSWEAFHNLWSFVRLSLASAVMLCLEVW 285

Query:   129 DTL--ILMIGNLNNSGTALDALSI 150
               +  IL  G L N+  ++ ALSI
Sbjct:   286 YLMAVILFAGYLKNAEISVAALSI 309

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 47/133 (35%), Positives = 70/133 (52%)

Query:    33 FAY--QFPPERFLQCQLKNMVIAWVSXXXXXXXXXXXXXXVYRVQFGVIGTAISLNFPWW 90
             FAY   FP ++FLQ Q K +V+AW+S              +   ++G++G AI+LN  WW
Sbjct:   167 FAYAANFPIQKFLQSQRKVLVMAWISGVVLVIHAVFSWLFILYFKWGLVGAAITLNTSWW 226

Query:    91 LLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML---LWDTLILMI--GN 137
             L+V+G   Y+        WTGF        + F+KLS AS +ML    W  ++L++  G 
Sbjct:   227 LIVIGQLLYILITKSDGAWTGFSMLAFRDLYGFVKLSLASALMLCLEFWYLMVLVVVTGL 286

Query:   138 LNNSGTALDALSI 150
             L N    +DA+SI
Sbjct:   287 LPNPLIPVDAISI 299

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
 Identities = 48/134 (35%), Positives = 63/134 (47%)

Query:    32 NFAY--QFPPERFLQCQLKNMVIAWVSXXXXXXXXXXXXXXVYRVQFGVIGTAISLNFPW 89
             NF +   F  + FLQ Q KN +IA+VS              V    FG+ G   S    +
Sbjct:   167 NFTFVPAFTCQIFLQSQSKNKIIAYVSAVTLGLHVFFSWLLVVHFNFGITGAMTSTLVAF 226

Query:    90 WLLVLGLFGYVACGGCPLTWTGF--------WEFIKLSAASGVML---LW--DTLILMIG 136
             W+  +    YV  GGC  TW GF        W   KLS +SG M+   LW    L+L+ G
Sbjct:   227 WMPNIVQLLYVTSGGCKDTWRGFTMLAFKDLWPVFKLSLSSGGMVCLELWYNSILVLLTG 286

Query:   137 NLNNSGTALDALSI 150
             NL N+  A+DAL+I
Sbjct:   287 NLKNAEVAIDALAI 300

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 47/142 (33%), Positives = 69/142 (48%)

Query:    23 VYMQRSSIENFAYQFPPERFLQCQLKNMVIAWVSXXXXXXXXXXXXXXVYRVQFGVIGTA 82
             VY     I  +A  FP ++FLQ Q      A++S              VYR+ +G++  +
Sbjct:   171 VYGMIPVIFAYAVNFPIQKFLQSQSIVTPSAYISAATLVIHLILSWIAVYRLGYGLLALS 230

Query:    83 ISLNFPWWLLVLGLFGYVACGG-CPLTWTGF--------WEFIKLSAASGVMLL---W-- 128
             +  +F WW++V+    Y+     C  TW GF        W+F +LSAAS VML    W  
Sbjct:   231 LIHSFSWWIIVVAQIVYIKMSPRCRRTWEGFSWKAFEGLWDFFRLSAASAVMLCLESWYS 290

Query:   129 DTLILMIGNLNNSGTALDALSI 150
               L+L+ G L N   ALD+L+I
Sbjct:   291 QILVLLAGLLKNPELALDSLAI 312

GO:0005215 "transporter activity" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009651 "response to salt stress" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	4e-28

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  106 bits (268), Expect = 4e-28
 Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 59/208 (28%)

Query: 1   MASALESLCGKAFGAKKYYMLGVYMQRSSIENFAYQFP------------------PE-- 40
           +ASAL++LCG+AFGAK Y ++GVY+QR+ +       P                  PE  
Sbjct: 59  LASALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIA 118

Query: 41  ------------------------RFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQF 76
                                   R+LQ Q   + + ++SLVALLL+ILL++LLV+ +  
Sbjct: 119 RLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGL 178

Query: 77  GVIGTAISLNFPWWLLVLGLFGYV-ACGGCPLTWTGF--------WEFIKLSAASGVMLL 127
           G IG A++ +  +WL+V+ L  Y+    G   TW GF          F+KL+  S +ML 
Sbjct: 179 GFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLC 238

Query: 128 -----WDTLILMIGNLNNSGTALDALSI 150
                ++ L+L+ G L  +  AL A SI
Sbjct: 239 LEWWAFEILVLLAGLLPGT-VALAAQSI 265

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.95
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.92
PRK00187	464	multidrug efflux protein NorA; Provisional	99.92
PRK10189	478	MATE family multidrug exporter; Provisional	99.89
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.88
PRK01766	456	multidrug efflux protein; Reviewed	99.85
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.85
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.7
PRK00187	464	multidrug efflux protein NorA; Provisional	99.49
PRK15099	416	O-antigen translocase; Provisional	99.45
PRK01766	456	multidrug efflux protein; Reviewed	99.43
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.41
PRK10189	478	MATE family multidrug exporter; Provisional	99.29
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.29
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.26
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.26
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.25
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.16
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.02
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.96
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	98.87
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.84
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	98.75
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	98.15
PRK10459	492	colanic acid exporter; Provisional	98.13
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.9
PRK15099	416	O-antigen translocase; Provisional	97.87
COG2244	480	RfbX Membrane protein involved in the export of O-	97.75
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.55
PRK10459	492	colanic acid exporter; Provisional	96.94
COG0728	518	MviN Uncharacterized membrane protein, putative vi	96.67
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	84.93
KOG1347	473	consensus Uncharacterized membrane protein, predic	84.48
COG2244	480	RfbX Membrane protein involved in the export of O-	82.86

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.95  E-value=2.6e-27  Score=192.94  Aligned_cols=146  Identities=19%  Similarity=0.215  Sum_probs=131.2

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ   36 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~   36 (150)
                      +.|.++++||++|+||+|++++..++++++                                             ++.++
T Consensus        73 ~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~  152 (455)
T COG0534          73 GTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLS  152 (455)
T ss_pred             HHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999887                                             66888


Q ss_pred             HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh-hC-CCchhhHHHHHHHHHHHHHHHHHHHhccCC---------
Q 039773           37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR-VQ-FGVIGTAISLNFPWWLLVLGLFGYVACGGC---------  105 (150)
Q Consensus        37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~-~~-~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~---------  105 (150)
                      .++++++|++||+|.||+++++++++|+++||+||++ ++ ||+.|+|+||.+++++.++..+.|+.+++.         
T Consensus       153 ~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (455)
T COG0534         153 FVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKL  232 (455)
T ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhc
Confidence            9999999999999999999999999999999999997 68 999999999999999999999888876531         


Q ss_pred             -CCCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhhh
Q 039773          106 -PLTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALDA  147 (150)
Q Consensus       106 -~~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~aa  147 (150)
                       +.+|+.+|+++|+|+|+++++..|     ..+.+.+.+|++.+|+.+
T Consensus       233 ~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~  280 (455)
T COG0534         233 LKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYG  280 (455)
T ss_pred             cCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence             245666799999999999999998     777889999988766654

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.92  E-value=1.3e-24  Score=176.49  Aligned_cols=145  Identities=17%  Similarity=0.143  Sum_probs=123.9

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ   36 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~   36 (150)
                      +.|.++++||++|+||+|++++..++++++                                             +..++
T Consensus        66 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~  145 (441)
T PRK10367         66 RMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLAN  145 (441)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999999999887                                             44667


Q ss_pred             HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc-C---C-----CC
Q 039773           37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG-G---C-----PL  107 (150)
Q Consensus        37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~---~-----~~  107 (150)
                      .+++.++|++||+|+||+++++++++|+++||+|++.++||+.|+|+||.+++++.+++...+++++ +   .     ++
T Consensus       146 ~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~  225 (441)
T PRK10367        146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKT  225 (441)
T ss_pred             HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhh
Confidence            7889999999999999999999999999999999998899999999999999999988776666543 1   1     11


Q ss_pred             Cc-ccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhh
Q 039773          108 TW-TGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALD  146 (150)
Q Consensus       108 ~~-~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~a  146 (150)
                      +| +.+||++|+|.|.++++..|     +.+.+++.+|++++|+.
T Consensus       226 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~  270 (441)
T PRK10367        226 AWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVN  270 (441)
T ss_pred             hhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            22 23589999999999999888     67788999998765543

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.92  E-value=2.7e-24  Score=175.46  Aligned_cols=146  Identities=16%  Similarity=0.150  Sum_probs=123.6

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH--------------------------------------------HHHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE--------------------------------------------NFAYQF   37 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~   37 (150)
                      +.|+++++||++|+||+|+++++.++++.+                                            +..+..
T Consensus        66 ~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~  145 (464)
T PRK00187         66 IAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFM  145 (464)
T ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999887                                            457778


Q ss_pred             hHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh-h---CCCchhhHHHHHHHHHHHHHHHHHHHhccC-C-----C-
Q 039773           38 PPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR-V---QFGVIGTAISLNFPWWLLVLGLFGYVACGG-C-----P-  106 (150)
Q Consensus        38 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~-~---~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~-~-----~-  106 (150)
                      .+++++|++||+++||++++++.++|+++||+||+. +   +||+.|+|+||+++++...+.+..|+++++ +     + 
T Consensus       146 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (464)
T PRK00187        146 ALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRK  225 (464)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhc
Confidence            899999999999999999999999999999999984 2   599999999999999988877766665431 1     1 


Q ss_pred             ----CCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhhh
Q 039773          107 ----LTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALDA  147 (150)
Q Consensus       107 ----~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~aa  147 (150)
                          .+++.+|+++|+|+|.+++++.|     +.+.+++++|++++|+..
T Consensus       226 ~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~  275 (464)
T PRK00187        226 GLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQ  275 (464)
T ss_pred             cccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence                12234599999999999999998     667789999998766543

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.89  E-value=2.3e-22  Score=164.79  Aligned_cols=146  Identities=12%  Similarity=0.180  Sum_probs=120.8

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH-----------------------------------------------HHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE-----------------------------------------------NFA   34 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-----------------------------------------------~~~   34 (150)
                      +.|.++++||++|+||+|++++..++++.+                                               +..
T Consensus        85 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~  164 (478)
T PRK10189         85 DLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAA  164 (478)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999877                                               445


Q ss_pred             HHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh----hCCCchhhHHHHHHHHHHHHHHHHHHHhcc-C--CC-
Q 039773           35 YQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR----VQFGVIGTAISLNFPWWLLVLGLFGYVACG-G--CP-  106 (150)
Q Consensus        35 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~----~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~--~~-  106 (150)
                      +...+++++|+.||++.||++++++.++|+++||+|++.    ++||+.|+|+||.+++++..++...++.++ +  .+ 
T Consensus       165 ~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~  244 (478)
T PRK10189        165 ITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRI  244 (478)
T ss_pred             HHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCcccee
Confidence            667788999999999999999999999999999999985    379999999999999999887766555432 1  11 


Q ss_pred             --------CCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhhh
Q 039773          107 --------LTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALDA  147 (150)
Q Consensus       107 --------~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~aa  147 (150)
                              .+++.+|+++|+|+|.+++...+     +.+.+++.+|++++|+..
T Consensus       245 ~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~  298 (478)
T PRK10189        245 SLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNF  298 (478)
T ss_pred             eeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence                    13344699999999999998887     446678899987665543

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.88  E-value=1e-21  Score=159.88  Aligned_cols=144  Identities=13%  Similarity=0.149  Sum_probs=120.2

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ   36 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~   36 (150)
                      +.|.++++||++|+||+|++++..++++.+                                             +..++
T Consensus        69 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~  148 (453)
T PRK09575         69 GMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGA  148 (453)
T ss_pred             hccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999999999888                                             44566


Q ss_pred             HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccCC---------CC
Q 039773           37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGC---------PL  107 (150)
Q Consensus        37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~---------~~  107 (150)
                      ..+..++|+.|+++.|++.++++.++|+++||+|++.+++|+.|+++||.+++++..++...|+++++.         +.
T Consensus       149 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (453)
T PRK09575        149 IALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRF  228 (453)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCc
Confidence            778889999999999999999999999999999999889999999999999999998887777664421         11


Q ss_pred             CcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCch-hhhh
Q 039773          108 TWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNS-GTAL  145 (150)
Q Consensus       108 ~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~-~la~  145 (150)
                      +|+.+|+++|+|+|.++++..+     +...+.+.+|++ ++|+
T Consensus       229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa  272 (453)
T PRK09575        229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGA  272 (453)
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            3334599999999999999888     445566777863 4444

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.85  E-value=1.8e-20  Score=152.29  Aligned_cols=145  Identities=16%  Similarity=0.341  Sum_probs=121.4

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ   36 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~   36 (150)
                      +.+.++++||++|++|+|++++..++++.+                                             +..+.
T Consensus        68 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~  147 (456)
T PRK01766         68 LLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY  147 (456)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999998877                                             44567


Q ss_pred             HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh----hCCCchhhHHHHHHHHHHHHHHHHHHHhccC-C------
Q 039773           37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR----VQFGVIGTAISLNFPWWLLVLGLFGYVACGG-C------  105 (150)
Q Consensus        37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~----~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~-~------  105 (150)
                      .+++++++++||+++|++.++++.++|+++||+|++.    +++|+.|+++||.+++++..++...|.++++ .      
T Consensus       148 ~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~  227 (456)
T PRK01766        148 QVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLF  227 (456)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhh
Confidence            7788999999999999999999999999999999984    3589999999999999999888777766432 1      


Q ss_pred             ----CCCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhh
Q 039773          106 ----PLTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALD  146 (150)
Q Consensus       106 ----~~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~a  146 (150)
                          +.+++.+|+++|+|+|..++...|     +.+.+++.+|++++|+.
T Consensus       228 ~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~  277 (456)
T PRK01766        228 KGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAH  277 (456)
T ss_pred             ccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence                123345699999999999999888     45567889998766554

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.85  E-value=9.5e-21  Score=154.85  Aligned_cols=150  Identities=43%  Similarity=0.758  Sum_probs=135.0

Q ss_pred             CcchhHHHHHhhhccCccchhHHHHHHHHHH--------------------------------------------HHHHH
Q 039773            1 MASALESLCGKAFGAKKYYMLGVYMQRSSIE--------------------------------------------NFAYQ   36 (150)
Q Consensus         1 l~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~--------------------------------------------~~~~~   36 (150)
                      +.++++|+|+|++|+++++..+.+++|+..+                                            ++...
T Consensus        84 l~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~  163 (473)
T KOG1347|consen   84 LQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVS  163 (473)
T ss_pred             cchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHH
Confidence            4578999999999999999999999999766                                            67888


Q ss_pred             HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCc-------
Q 039773           37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTW-------  109 (150)
Q Consensus        37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~-------  109 (150)
                      ..+++++++|+++.+..+++..+.++|++++|++++++++|+.|++++..+++|.....+..|.....+++.|       
T Consensus       164 ~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~  243 (473)
T KOG1347|consen  164 FPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEF  243 (473)
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999888765544444       


Q ss_pred             ccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhhhhcCC
Q 039773          110 TGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTALDALSI  150 (150)
Q Consensus       110 ~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~aa~~i  150 (150)
                      +++++++|+++|+++|.|.|     ...+..|.++++..++++++|
T Consensus       244 ~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI  289 (473)
T KOG1347|consen  244 DSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSI  289 (473)
T ss_pred             hhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence            45689999999999999998     888999999998777777654

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.70  E-value=9e-16  Score=119.77  Aligned_cols=143  Identities=23%  Similarity=0.461  Sum_probs=118.4

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ   36 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~   36 (150)
                      +.+..+.++|++|+||+|++++..+++..+                                             +..+.
T Consensus        49 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~  128 (342)
T TIGR00797        49 GTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLN  128 (342)
T ss_pred             HHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999988777                                             33455


Q ss_pred             HhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH-hhC-CCchhhHHHHHHHHHHHHHHHHHHHhcc-CCC-------
Q 039773           37 FPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVY-RVQ-FGVIGTAISLNFPWWLLVLGLFGYVACG-GCP-------  106 (150)
Q Consensus        37 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~-~~~-~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~~~-------  106 (150)
                      ...+.++|+.|+++.+++.++++.++|+++++++++ .++ +|+.|+++++.+++++..++...+.+++ +.+       
T Consensus       129 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (342)
T TIGR00797       129 FVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLL  208 (342)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence            677789999999999999999999999999999998 678 9999999999999999888877666542 221       


Q ss_pred             -CCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhh
Q 039773          107 -LTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTA  144 (150)
Q Consensus       107 -~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la  144 (150)
                       .+++.+|+++|+|+|..++..++     +.+.+.+.+|+++.+
T Consensus       209 ~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~  252 (342)
T TIGR00797       209 KPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALA  252 (342)
T ss_pred             CCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence             22345699999999999999887     455678888876543

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.49  E-value=2.6e-13  Score=110.99  Aligned_cols=100  Identities=15%  Similarity=0.103  Sum_probs=86.2

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH--------------------------------------------------
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE--------------------------------------------------   31 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~--------------------------------------------------   31 (150)
                      +.|.++++||++|+||+|+++++.++++.+                                                  
T Consensus       292 ~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~  371 (464)
T PRK00187        292 SYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFEL  371 (464)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999998877                                                  


Q ss_pred             HHHHHHhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 039773           32 NFAYQFPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVA  101 (150)
Q Consensus        32 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~  101 (150)
                      +..+..++.+.+|+.||+|.++++++++. ++|++++|++++.+++|+.|+++++.+++++..+.....++
T Consensus       372 ~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~  442 (464)
T PRK00187        372 FDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE  442 (464)
T ss_pred             hhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence            11223355788999999999999999997 99999999999988999999999999999998766654443

>PRK15099 O-antigen translocase; Provisional

Probab=99.45  E-value=4.1e-12  Score=102.23  Aligned_cols=135  Identities=13%  Similarity=0.002  Sum_probs=99.2

Q ss_pred             hhHHHHHhhhccCccchhHHHHHHHHHH-----------------------------------------HHHHHHhHHHH
Q 039773            4 ALESLCGKAFGAKKYYMLGVYMQRSSIE-----------------------------------------NFAYQFPPERF   42 (150)
Q Consensus         4 ~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~   42 (150)
                      +.+..++|+  ++|+|+.++....++.+                                         ...+.....+.
T Consensus        61 a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (416)
T PRK15099         61 GVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAI  138 (416)
T ss_pred             eeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667877  67778888877776655                                         22334556788


Q ss_pred             HhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc-C-------CCCCcccHHH
Q 039773           43 LQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG-G-------CPLTWTGFWE  114 (150)
Q Consensus        43 l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~-------~~~~~~~~~~  114 (150)
                      +|+.||++.++....++.++|+.+ +++++.. .|+.|+++||.+++.+..+....++.++ +       .+.+|+.+|+
T Consensus       139 lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  216 (416)
T PRK15099        139 LKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQ  216 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHH
Confidence            999999999999999999999887 5555432 3999999999999999876655555433 1       1223455699


Q ss_pred             HHHHHHHHHHHHHHH-----HHHHHH-hcCCchh
Q 039773          115 FIKLSAASGVMLLWD-----TLILMI-GNLNNSG  142 (150)
Q Consensus       115 ~l~lg~P~~~~~~~e-----~~~~~~-~~lg~~~  142 (150)
                      +++.|+|..+++...     ....++ ..+|+++
T Consensus       217 ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~  250 (416)
T PRK15099        217 LGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDE  250 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            999999999988775     444555 4888664

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.43  E-value=1.3e-12  Score=106.29  Aligned_cols=100  Identities=21%  Similarity=0.154  Sum_probs=89.2

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ   36 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~   36 (150)
                      +.|.++++||++|+||+|++++..++++.+                                             +..+.
T Consensus       295 ~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~  374 (456)
T PRK01766        295 AMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQ  374 (456)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999999998876                                             34566


Q ss_pred             HhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 039773           37 FPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVA  101 (150)
Q Consensus        37 ~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~  101 (150)
                      .+..+++||.||++.|+++++++. ++++++.|++.+.+++|+.|+++++.+++++..++...++.
T Consensus       375 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~  440 (456)
T PRK01766        375 VIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLR  440 (456)
T ss_pred             HHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999987 79999999999888899999999999999999887765554

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.41  E-value=2.5e-12  Score=104.86  Aligned_cols=99  Identities=13%  Similarity=0.164  Sum_probs=86.5

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH----------------------------------------------HHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE----------------------------------------------NFAY   35 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~----------------------------------------------~~~~   35 (150)
                      +.|.++++||++||||+|++++..++++.+                                              +...
T Consensus       291 ~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~  370 (453)
T PRK09575        291 AEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGF  370 (453)
T ss_pred             HHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999877                                              4456


Q ss_pred             HHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 039773           36 QFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVAC  102 (150)
Q Consensus        36 ~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~  102 (150)
                      ....+.++||.||++.+++++....++|+++.|++...  +|+.|+++++.+++++..++...++++
T Consensus       371 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~  435 (453)
T PRK09575        371 LVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR  435 (453)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence            67778899999999999999999888999999988653  799999999999999988777665554

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.29  E-value=5.7e-11  Score=97.71  Aligned_cols=102  Identities=16%  Similarity=0.230  Sum_probs=87.2

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ   36 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~   36 (150)
                      +.|.+++++|++||+|+|++++..+.+..+                                             +....
T Consensus       315 ~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~  394 (478)
T PRK10189        315 GSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAAS  394 (478)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999888766                                             33445


Q ss_pred             HhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Q 039773           37 FPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG  103 (150)
Q Consensus        37 ~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~  103 (150)
                      ....+.+||.||++.++++++++. ++-+++.|++.+.+++|+.|.+++..+++.+..++...++++.
T Consensus       395 ~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~  462 (478)
T PRK10189        395 WVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSG  462 (478)
T ss_pred             HHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            567888999999999999998886 7889999998887789999999999999999887766665543

>TIGR01695 mviN integral membrane protein MviN

Probab=99.29  E-value=8e-11  Score=96.45  Aligned_cols=123  Identities=16%  Similarity=0.144  Sum_probs=93.9

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH-------------------------------------------------H
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE-------------------------------------------------N   32 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-------------------------------------------------~   32 (150)
                      +.+..|.+||++|++|+|++++..+++...                                                 +
T Consensus       280 ~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~  359 (502)
T TIGR01695       280 STVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIF  359 (502)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            456778999999999999999988887655                                                 2


Q ss_pred             HHHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccCCC-CCccc
Q 039773           33 FAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCP-LTWTG  111 (150)
Q Consensus        33 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~-~~~~~  111 (150)
                      ..+.....+.+++.||+|.+++.+.++.++|++++++++.  .+|..|+++|+.+++.+..++...+.+++... +.++.
T Consensus       360 ~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~  437 (502)
T TIGR01695       360 YSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRLKGILPFGV  437 (502)
T ss_pred             HHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHH
Confidence            2334455677899999999999999999999999999976  37899999999999999988877666654222 22223


Q ss_pred             HHHHHHHHHHHHHHH
Q 039773          112 FWEFIKLSAASGVML  126 (150)
Q Consensus       112 ~~~~l~lg~P~~~~~  126 (150)
                      .+++.|.-+++.++.
T Consensus       438 ~~~~~~~~~as~~m~  452 (502)
T TIGR01695       438 LKVLAKLVIASAIIG  452 (502)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            355666666655553

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.26  E-value=1.5e-10  Score=94.41  Aligned_cols=102  Identities=19%  Similarity=0.194  Sum_probs=85.3

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH-----------------------------------------HHHHHHhHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE-----------------------------------------NFAYQFPPE   40 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~   40 (150)
                      +.+..|..+|++|+||+|+.++..++...+                                         +........
T Consensus       292 ~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~  371 (488)
T TIGR02900       292 STALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGNFIRVLAPSFPFLYFSAPLQ  371 (488)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            346788899999999999999888877655                                         234455567


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Q 039773           41 RFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG  103 (150)
Q Consensus        41 ~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~  103 (150)
                      +.+++.||+|.+++.+.++.++|+++|++++..+.+|+.|+++||.+++.+..++...+.++.
T Consensus       372 ~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~  434 (488)
T TIGR02900       372 SILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN  434 (488)
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999998865678999999999999999888876666543

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.26  E-value=2e-10  Score=93.74  Aligned_cols=128  Identities=13%  Similarity=0.130  Sum_probs=100.1

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH-----------------------------------------HHHHHHhHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE-----------------------------------------NFAYQFPPE   40 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~   40 (150)
                      +.+....+||+.|++|+|++++...++.++                                         +..+....+
T Consensus        57 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  136 (488)
T TIGR02900        57 PVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLK  136 (488)
T ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677899999999999999988887765                                         113455577


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh-----hCCCchhhHHHHHHHHHHHHHHHHHHHhcc-C--CCC-----
Q 039773           41 RFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR-----VQFGVIGTAISLNFPWWLLVLGLFGYVACG-G--CPL-----  107 (150)
Q Consensus        41 ~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~-----~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~--~~~-----  107 (150)
                      .++|+.+|.+.++..+.++.++|++++..+++.     ..+|+.|+++++.+++++..+....+++++ +  .+.     
T Consensus       137 ~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (488)
T TIGR02900       137 GYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDY  216 (488)
T ss_pred             HHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            889999999999999999999999988777662     236788999999999999888776555433 1  111     


Q ss_pred             ---CcccHHHHHHHHHHHHHHHHHH
Q 039773          108 ---TWTGFWEFIKLSAASGVMLLWD  129 (150)
Q Consensus       108 ---~~~~~~~~l~lg~P~~~~~~~e  129 (150)
                         +++.+|++++.|+|..++...+
T Consensus       217 ~~~~~~~~k~l~~~~~p~~l~~~~~  241 (488)
T TIGR02900       217 KSEGKALLFDLFSVSLPLTLSRFIG  241 (488)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHH
Confidence               1335699999999999988877

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.25  E-value=7.6e-11  Score=96.50  Aligned_cols=102  Identities=21%  Similarity=0.204  Sum_probs=90.3

Q ss_pred             CcchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHH
Q 039773            1 MASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAY   35 (150)
Q Consensus         1 l~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~   35 (150)
                      ++.|.+++++|++||||+|++++..+.+..+                                             +...
T Consensus       296 i~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~  375 (455)
T COG0534         296 IAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGI  375 (455)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999998887                                             3467


Q ss_pred             HHhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Q 039773           36 QFPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG  103 (150)
Q Consensus        36 ~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~  103 (150)
                      .....+.+||.||+|.|+++++++. .+.+++.|++.+.+ +|..|.+++..+++.+..++...+++++
T Consensus       376 ~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~  443 (455)
T COG0534         376 QFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRG  443 (455)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7788999999999999999999986 77899999988866 9999999999999999988887777654

>TIGR01695 mviN integral membrane protein MviN

Probab=99.16  E-value=3.1e-09  Score=87.06  Aligned_cols=111  Identities=12%  Similarity=0.068  Sum_probs=83.3

Q ss_pred             HHHHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhH--HHHHHHHHHHHHHHHHHHhccC--CC-
Q 039773           32 NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTA--ISLNFPWWLLVLGLFGYVACGG--CP-  106 (150)
Q Consensus        32 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa--~at~is~~~~~~~~~~~~~~~~--~~-  106 (150)
                      +..+....+.++|+.||++.+++.+.+.++++++...+  +..++|+.|++  +++.+++.+..+....+.++++  .+ 
T Consensus       136 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~--~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  213 (502)
T TIGR01695       136 LISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLF--FDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP  213 (502)
T ss_pred             HHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHH--HHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence            33455667889999999999999999998888775433  34578999988  9999999998887766665432  22 


Q ss_pred             ---CCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhh
Q 039773          107 ---LTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTA  144 (150)
Q Consensus       107 ---~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la  144 (150)
                         .+++.+|+++|.|.|..++...+     +-..+.+.+|+++++
T Consensus       214 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~  259 (502)
T TIGR01695       214 RFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVS  259 (502)
T ss_pred             cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH
Confidence               23445699999999999988777     445567777765443

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.02  E-value=9.7e-09  Score=84.03  Aligned_cols=119  Identities=18%  Similarity=0.169  Sum_probs=94.0

Q ss_pred             hHHHHHhhhccCccchhHHHHHHHHHH-------------------------------------------------HHHH
Q 039773            5 LESLCGKAFGAKKYYMLGVYMQRSSIE-------------------------------------------------NFAY   35 (150)
Q Consensus         5 ~~~lvsq~~Ga~~~~~~~~~~~~~~~~-------------------------------------------------~~~~   35 (150)
                      .-|..|+..-+||.++.++.+++++..                                                 ++.+
T Consensus       258 ~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l  337 (451)
T PF03023_consen  258 VFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYAL  337 (451)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            346678888899999998888887665                                                 6677


Q ss_pred             HHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccCCCCCcccH-HH
Q 039773           36 QFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGCPLTWTGF-WE  114 (150)
Q Consensus        36 ~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~-~~  114 (150)
                      ...+.+.+.+++|+|.|++++.++.++|++++++++.  .+|..|.++|++++.+++++++..+++|+....+++.+ +.
T Consensus       338 ~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~~~~~~~~~~~  415 (451)
T PF03023_consen  338 NDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLGLFSFRKILLF  415 (451)
T ss_pred             HHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence            8888999999999999999999999999999988776  47999999999999999998888777765323334444 34


Q ss_pred             HHHHHHHHHHH
Q 039773          115 FIKLSAASGVM  125 (150)
Q Consensus       115 ~l~lg~P~~~~  125 (150)
                      ..+.-.+..++
T Consensus       416 ~~~~~~~~~~~  426 (451)
T PF03023_consen  416 LLKILLASALM  426 (451)
T ss_pred             HHHHHHHHHHH
Confidence            44434444443

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.96  E-value=2.2e-08  Score=82.92  Aligned_cols=121  Identities=19%  Similarity=0.219  Sum_probs=96.1

Q ss_pred             hHHHHHhhhccCccchhHHHHHHHHHH-------------------------------------------------HHHH
Q 039773            5 LESLCGKAFGAKKYYMLGVYMQRSSIE-------------------------------------------------NFAY   35 (150)
Q Consensus         5 ~~~lvsq~~Ga~~~~~~~~~~~~~~~~-------------------------------------------------~~~~   35 (150)
                      +-|-.|++...+|.++..+.+++++.+                                                 ++.+
T Consensus       292 llP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L  371 (518)
T COG0728         292 LLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFAL  371 (518)
T ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHH
Confidence            456789999999999988888888766                                                 7778


Q ss_pred             HHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccCC---CCCcccH
Q 039773           36 QFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGGC---PLTWTGF  112 (150)
Q Consensus        36 ~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~---~~~~~~~  112 (150)
                      ...+...+.+++|+|+|+.+++++.++|+.+|++++.  .+|..|.|+|++++.|+++.+++...+++..   .+.|..+
T Consensus       372 ~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~~~~~~~~  449 (518)
T COG0728         372 VKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLF  449 (518)
T ss_pred             HHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHH
Confidence            8888999999999999999999999999999976665  4678889999999999998887766665522   2345544


Q ss_pred             HHHHHHHHHHHHHHHH
Q 039773          113 WEFIKLSAASGVMLLW  128 (150)
Q Consensus       113 ~~~l~lg~P~~~~~~~  128 (150)
                      . ..|+-+-.+++...
T Consensus       450 ~-~~k~~l~~~i~~~~  464 (518)
T COG0728         450 L-ILKLLLASAIMAAA  464 (518)
T ss_pred             H-HHHHHHHHHHHHHH
Confidence            5 56666666665443

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=98.87  E-value=3.9e-10  Score=79.12  Aligned_cols=68  Identities=24%  Similarity=0.360  Sum_probs=62.3

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ   36 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~   36 (150)
                      +.|.++++||++|++|+|++++..++++.+                                             +..+.
T Consensus        49 ~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (162)
T PF01554_consen   49 ATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALF  128 (162)
T ss_dssp             HHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHH
T ss_pred             cccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHH
Confidence            568899999999999999999999999888                                             55777


Q ss_pred             HhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHH
Q 039773           37 FPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWL   69 (150)
Q Consensus        37 ~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~   69 (150)
                      ...++++++.|+++.+++++.++. ++|++++|+
T Consensus       129 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl  162 (162)
T PF01554_consen  129 FVFSGILQGIGRTKIAMYISIISFWIINIPLAYL  162 (162)
T ss_dssp             HHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence            888899999999999999999999 999999985

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.84  E-value=9.6e-08  Score=66.05  Aligned_cols=70  Identities=21%  Similarity=0.296  Sum_probs=61.9

Q ss_pred             HHHHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Q 039773           32 NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG  103 (150)
Q Consensus        32 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~  103 (150)
                      +..+.....+.+++.||+|.++..+.++.++|+++|++++.  .+|..|+++|+.+++.+.......+.+++
T Consensus        11 ~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~   80 (146)
T PF14667_consen   11 FMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRKK   80 (146)
T ss_pred             HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777899999999999999999999999999999975  58999999999999999988877676654

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=98.75  E-value=6.2e-08  Score=79.07  Aligned_cols=95  Identities=17%  Similarity=0.077  Sum_probs=68.6

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH--------------------------------------------HHH-HH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE--------------------------------------------NFA-YQ   36 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~--------------------------------------------~~~-~~   36 (150)
                      +.|.+++++|++|+||+|++++..+++..+                                            +.. ..
T Consensus       288 ~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~  367 (441)
T PRK10367        288 AYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWC  367 (441)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999988766                                            000 22


Q ss_pred             HhHHHHHhhcc---hhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 039773           37 FPPERFLQCQL---KNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVAC  102 (150)
Q Consensus        37 ~~~~~~l~~~g---~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~  102 (150)
                      ......+++.+   |+|.|++++.++..+    -+  +..+++|+.|.+++..+++.+..+++..++++
T Consensus       368 ~~~~~~~~g~lrg~dt~~~~~~~~~~~~~----~~--~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~  430 (441)
T PRK10367        368 YLLDGMFIGATRAAEMRNSMAVAAAGFAL----TL--LTLPWLGNHGLWLALTVFLALRGLSLAAIWRR  430 (441)
T ss_pred             HHHHHHhhCccchHHHHHHHHHHHHHHHH----HH--HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23333344444   699999999887532    11  11235899999999999999998887665543

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=98.15  E-value=0.00029  Score=57.81  Aligned_cols=111  Identities=15%  Similarity=0.097  Sum_probs=81.5

Q ss_pred             HHHHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCC---chhhHHHHHHHHHHHHHHHHHHHhcc--CCC
Q 039773           32 NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFG---VIGTAISLNFPWWLLVLGLFGYVACG--GCP  106 (150)
Q Consensus        32 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~G---v~Gaa~at~is~~~~~~~~~~~~~~~--~~~  106 (150)
                      +..+...+.+.++++++...|....++.++.-+..-+++  ....|   +.+.+++..++..++.+..+.+.++.  +.+
T Consensus       110 ~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~--~~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~  187 (451)
T PF03023_consen  110 FIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLL--SNSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFR  187 (451)
T ss_pred             HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence            446667788999999999999988887776655533322  23466   88899999999999988888777765  222


Q ss_pred             --CCcc--cHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhh
Q 039773          107 --LTWT--GFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTA  144 (150)
Q Consensus       107 --~~~~--~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la  144 (150)
                        .+|+  +.|+++|...|..+.....     +-..+++.+++...+
T Consensus       188 ~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs  234 (451)
T PF03023_consen  188 PKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVS  234 (451)
T ss_pred             ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence              3443  3699999999999987666     445567778766544

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK10459 colanic acid exporter; Provisional

Probab=98.13  E-value=0.00011  Score=60.47  Aligned_cols=67  Identities=12%  Similarity=-0.017  Sum_probs=54.6

Q ss_pred             HHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Q 039773           35 YQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG  103 (150)
Q Consensus        35 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~  103 (150)
                      ........+.+.|++|.++..+++.++++++..+.+..  .+|+.|+++|+.+++.+.......+..++
T Consensus       339 ~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~  405 (492)
T PRK10459        339 VGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP  405 (492)
T ss_pred             HHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555678999999999999999999999988877664  46999999999999998877776666443

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.90  E-value=0.0023  Score=47.32  Aligned_cols=108  Identities=19%  Similarity=0.216  Sum_probs=71.0

Q ss_pred             HHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc-CCCCCcccH
Q 039773           34 AYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG-GCPLTWTGF  112 (150)
Q Consensus        34 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~~~~~~~~~  112 (150)
                      ...+..+..+++.++.+.......+..........++.+ .+.+..+..++..++..+..+....+.+++ +.+++++ .
T Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  182 (251)
T PF13440_consen  105 ALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKLRLSFKFS-W  182 (251)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhh-H
Confidence            445667888999999999999988888777444444443 334888888888888887665544333222 1222222 2


Q ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHhc-CCchhh
Q 039773          113 WEFIKLSAASGVMLLWD-----TLILMIGN-LNNSGT  143 (150)
Q Consensus       113 ~~~l~lg~P~~~~~~~e-----~~~~~~~~-lg~~~l  143 (150)
                      ++.+|.+.|........     .-.++++. +|+++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~  219 (251)
T PF13440_consen  183 RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAV  219 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            34799999999987776     33455555 665543

>PRK15099 O-antigen translocase; Provisional

Probab=97.87  E-value=0.00025  Score=57.19  Aligned_cols=56  Identities=11%  Similarity=0.067  Sum_probs=45.5

Q ss_pred             HhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHH
Q 039773           43 LQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYV  100 (150)
Q Consensus        43 l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~  100 (150)
                      +-+.++++..+...+...+++++++|+++..  +|..|+++|+.+++.+..++.....
T Consensus       354 ~~~~~~~~~~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~  409 (416)
T PRK15099        354 VIAKASLRFYILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVF  409 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777788888888888999999998864  7899999999999999887665433

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=97.75  E-value=0.00086  Score=54.83  Aligned_cols=83  Identities=24%  Similarity=0.319  Sum_probs=66.9

Q ss_pred             chhHHHHHhhhccCccchhHHHHHHHHHH-------------------------------------------HHHHHHhH
Q 039773            3 SALESLCGKAFGAKKYYMLGVYMQRSSIE-------------------------------------------NFAYQFPP   39 (150)
Q Consensus         3 ~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~   39 (150)
                      ...-|..++.+.++|.++.++...+...+                                           +..+....
T Consensus       271 ~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~l~il~~~~~~~~~~~~~  350 (480)
T COG2244         271 RVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLT  350 (480)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccchhHHHHHHHHHHHHHHHHHHH
Confidence            45667889999998888876666665544                                           34555666


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHH
Q 039773           40 ERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFP   88 (150)
Q Consensus        40 ~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is   88 (150)
                      ...+++.|+++..++.+.++.++|.++|++++.  ..|..|+++++ .+
T Consensus       351 ~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~  396 (480)
T COG2244         351 SSLLQALGKQRLLLLISLISALLNLILNLLLIP--RFGLIGAAIAT-AS  396 (480)
T ss_pred             HHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence            889999999999999999999999999999986  46778888888 44

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.55  E-value=0.015  Score=43.19  Aligned_cols=95  Identities=17%  Similarity=0.108  Sum_probs=71.6

Q ss_pred             HHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc-CC---CCCc
Q 039773           34 AYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG-GC---PLTW  109 (150)
Q Consensus        34 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~~---~~~~  109 (150)
                      ........++++.++.+.....+.+..+...+.-.++++. +.++.+..++..++..+..+....+.+++ +.   ..++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (273)
T PF01943_consen  123 SLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSK  201 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccch
Confidence            3445567888999999999888888888888776666653 34478888999999888877777666643 22   2235


Q ss_pred             ccHHHHHHHHHHHHHHHHHH
Q 039773          110 TGFWEFIKLSAASGVMLLWD  129 (150)
Q Consensus       110 ~~~~~~l~lg~P~~~~~~~e  129 (150)
                      +..|+++|.|.|..+.....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~  221 (273)
T PF01943_consen  202 KFFKEILRFGLPLFLSSLLS  221 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66799999999999987776

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PRK10459 colanic acid exporter; Provisional

Probab=96.94  E-value=0.074  Score=43.71  Aligned_cols=94  Identities=9%  Similarity=-0.033  Sum_probs=64.0

Q ss_pred             HHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhcc-CCC--CCccc
Q 039773           35 YQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACG-GCP--LTWTG  111 (150)
Q Consensus        35 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~-~~~--~~~~~  111 (150)
                      +....+..++...+.+.......+..+........+.+ .+.|+.+..+++.+++.+..+......+++ +.+  .+++.
T Consensus       127 ~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  205 (492)
T PRK10459        127 IGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLAS  205 (492)
T ss_pred             HhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCccceecHHH
Confidence            33445677788888887777777776666665555443 478999999999999887765543322222 222  23455


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 039773          112 FWEFIKLSAASGVMLLWD  129 (150)
Q Consensus       112 ~~~~l~lg~P~~~~~~~e  129 (150)
                      +|++++.|.|........
T Consensus       206 ~k~ll~~~~~~~~~~~~~  223 (492)
T PRK10459        206 VKPNLSFGAWQTAERIIN  223 (492)
T ss_pred             HHHHHhhhHHHHHHHHHH
Confidence            699999999999877655

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=96.67  E-value=0.15  Score=42.94  Aligned_cols=111  Identities=13%  Similarity=0.044  Sum_probs=76.5

Q ss_pred             HHHHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHhccC----CCC
Q 039773           32 NFAYQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVACGG----CPL  107 (150)
Q Consensus        32 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~----~~~  107 (150)
                      +..+.....+.+++.++-.+|-+.-.+-|+.-|...+.+-.....-..+.+|++.++-..+.+..+...++..    .+.
T Consensus       145 ~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~  224 (518)
T COG0728         145 FISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRF  224 (518)
T ss_pred             HHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCC
Confidence            3345555667888899988888877766665554444333322223568888899999999888887777652    233


Q ss_pred             Ccc--cHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchh
Q 039773          108 TWT--GFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSG  142 (150)
Q Consensus       108 ~~~--~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~  142 (150)
                      .|+  +.|++++.-.|..+.....     +-+.+++.+.+.+
T Consensus       225 ~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gs  266 (518)
T COG0728         225 GFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGS  266 (518)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            444  5699999999999987665     5567777776543

>TIGR00797 matE putative efflux protein, MATE family

Probab=84.93  E-value=2.3  Score=32.84  Aligned_cols=30  Identities=20%  Similarity=0.079  Sum_probs=26.5

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE   31 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~   31 (150)
                      +.+..+.++|++|+||+|++++..+++..+
T Consensus       272 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (342)
T TIGR00797       272 GIAVSILVGQALGAGDPKRAKEVARVALKL  301 (342)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            457788999999999999999999988877

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=84.48  E-value=0.04  Score=45.76  Aligned_cols=95  Identities=21%  Similarity=0.147  Sum_probs=55.7

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH-----------HH----------------------------------HHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE-----------NF----------------------------------AYQ   36 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~-----------~~----------------------------------~~~   36 (150)
                      +.|..+-++..+|++|++.++.....+...           .+                                  ...
T Consensus       305 ~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q  384 (473)
T KOG1347|consen  305 SAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQ  384 (473)
T ss_pred             hhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccch
Confidence            457788999999999999998877777544           11                                  111


Q ss_pred             HhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHH
Q 039773           37 FPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGL   96 (150)
Q Consensus        37 ~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~   96 (150)
                      .+.++..++.|..+...++++..- ++-++...++-|..++|+.|.+++......+....+
T Consensus       385 ~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l  445 (473)
T KOG1347|consen  385 AVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVL  445 (473)
T ss_pred             hhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHH
Confidence            122223344555555444443332 333333333333456899999998888744444443

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=82.86  E-value=24  Score=28.73  Aligned_cols=91  Identities=10%  Similarity=-0.065  Sum_probs=47.7

Q ss_pred             HHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHh--cc-CCCCC---
Q 039773           35 YQFPPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRVQFGVIGTAISLNFPWWLLVLGLFGYVA--CG-GCPLT---  108 (150)
Q Consensus        35 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~--~~-~~~~~---  108 (150)
                      .....+.++|+.++.+...+..... .  ......+.... .......++..++..........+..  ++ ..+..   
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (480)
T COG2244         132 LSSVLRGLFQGFGRFGPLALSIVSS-I--FLLAAVFALLF-AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF  207 (480)
T ss_pred             HHHHHHHHHHHHhhcccchhHHHHH-H--HHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc
Confidence            3344567778888777766663322 1  11111111111 22334445555555554444443332  22 12222   


Q ss_pred             -cccHHHHHHHHHHHHHHHHHH
Q 039773          109 -WTGFWEFIKLSAASGVMLLWD  129 (150)
Q Consensus       109 -~~~~~~~l~lg~P~~~~~~~e  129 (150)
                       ++.+++.++.|+|........
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~  229 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLN  229 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHH
Confidence             446699999999999987776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	1e-04

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 22/130 (16%)

Query: 41  RFLQCQLKNMVIAWVSLVALLLHILLSWLLVYRV----QFGVIGTAISLNFPWWLLVLGL 96
            F            +  + LLL+I L+W+ VY      + G +G  ++    +W+++L L
Sbjct: 151 SFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLL 210

Query: 97  FGYVAC-----------GGCPLTWTGFWEFIKLSAASGVMLLWDTLI-----LMIGNLNN 140
             Y+                           +L       L ++  +     L++  L +
Sbjct: 211 LFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGS 270

Query: 141 SGTALDALSI 150
             T + A  +
Sbjct: 271 --TVVAAHQV 278

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.73
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.26

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.73  E-value=9.7e-18  Score=133.64  Aligned_cols=144  Identities=17%  Similarity=0.317  Sum_probs=119.9

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH--------------------------------------------HHHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE--------------------------------------------NFAYQF   37 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~   37 (150)
                      +.+..+.++|++|++|+|+.++..++++.+                                            +..+..
T Consensus        68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~  147 (460)
T 3mkt_A           68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ  147 (460)
T ss_dssp             HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999888766                                            334556


Q ss_pred             hHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh-h---CCCchhhHHHHHHHHHHHHHHHHHHHhccC-C-------
Q 039773           38 PPERFLQCQLKNMVIAWVSLVALLLHILLSWLLVYR-V---QFGVIGTAISLNFPWWLLVLGLFGYVACGG-C-------  105 (150)
Q Consensus        38 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~~i~~-~---~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~-~-------  105 (150)
                      .++++++++|+++.+++.++++.++|++++++|++. +   ++|+.|+++|+.+++++..++...+.++++ .       
T Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (460)
T 3mkt_A          148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE  227 (460)
T ss_dssp             HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence            677889999999999999999999999999999985 4   799999999999999999888777776542 1       


Q ss_pred             ---CCCcccHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCchhhhh
Q 039773          106 ---PLTWTGFWEFIKLSAASGVMLLWD-----TLILMIGNLNNSGTAL  145 (150)
Q Consensus       106 ---~~~~~~~~~~l~lg~P~~~~~~~e-----~~~~~~~~lg~~~la~  145 (150)
                         +.+++.+|+++|+|+|..++...+     +.+.+++.+|++++++
T Consensus       228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~  275 (460)
T 3mkt_A          228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAA  275 (460)
T ss_dssp             CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHH
T ss_pred             cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence               123445699999999999998888     6677889998776543

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.26  E-value=2.4e-11  Score=96.58  Aligned_cols=100  Identities=14%  Similarity=0.062  Sum_probs=86.1

Q ss_pred             cchhHHHHHhhhccCccchhHHHHHHHHHH---------------------------------------------HHHHH
Q 039773            2 ASALESLCGKAFGAKKYYMLGVYMQRSSIE---------------------------------------------NFAYQ   36 (150)
Q Consensus         2 ~~~~~~lvsq~~Ga~~~~~~~~~~~~~~~~---------------------------------------------~~~~~   36 (150)
                      +.+..|.++|++|++|+|++++..+++..+                                             +..+.
T Consensus       294 ~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  373 (460)
T 3mkt_A          294 GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQ  373 (460)
T ss_dssp             HHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999988887655                                             33556


Q ss_pred             HhHHHHHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHh----hC-CCchhhHHHHHHHHHHHHHHHHHHHh
Q 039773           37 FPPERFLQCQLKNMVIAWVSLVAL-LLHILLSWLLVYR----VQ-FGVIGTAISLNFPWWLLVLGLFGYVA  101 (150)
Q Consensus        37 ~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~~i~~----~~-~Gv~Gaa~at~is~~~~~~~~~~~~~  101 (150)
                      ....+.+++.||+|.++++++++. ++|+++++++++.    ++ +|+.|+++|+.+++.+..++...+++
T Consensus       374 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~  444 (460)
T 3mkt_A          374 VVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY  444 (460)
T ss_dssp             HHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            667889999999999999999998 9999999999987    67 99999999999999998776654443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00