Citrus Sinensis ID: 039778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS
Secondary Structure (PSIPRED)
cccccEEEcccccccccccHHHHccccccEEEcccccEEEEccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEccHHHHcccccccEEEccccccccccccHHccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccEEcccHHccccccccEEEccccccccccccccccccccccEEEccccEEEEccccccccccccEEEEccccEEEEcccccccccccccEEEccccEEEEcccHHHHHccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHccccccEEEccccccccccHHHHHccccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccHHHcccccccEEEEccccccccccccccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEEcccccccccccHHHccccccEEEEEccccccccccccHHHcccccccEEEEccccccccccHHHcccccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccc
Coil and Loop (DISEMBL)
lsnlkfldlshnsfnnSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESldlsgnkfnSSILSSLTALSSLRKLNLMAtgfkgtfdvqeldslsnleeldmsdneidnlvvpkdyrglrklrfldlsglrirdgskvlhsigsfpslktlYLKSNNFAKTVTTTQGLCELVHLqdlyidrndfigsLPWCLAnltslrvlhvpdnqltgnlsssplmHLTSIEVLLLsnnhfqipislepffnysklkifhannslsgpfrlptrsrknIIALDISYnklqghipveigkvlpnlgflsitfnafngsipssfgdmnSLIYLdlsnnqltgeipehlamGCFNLEYLLLSNNslqgqlfskknnltklkrlnldgnhfigdipeslsncsslqglyisdnditgsiptwignisfldaiimpdnhlegpipsefcqlDYLEILDlsknniagslps
Flexible Loop (DISEMBL)
lsnlkfldLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNleeldmsdneidnlvvpkdyrglrKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANnslsgpfrlpTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLsknniagslps
Low Complexity Region (SEG)
LSNLKFLDLSHNSFnnsvlsslaglsslknlslAYNRLEGSINIEGMNMLESLDLSGNKFNssilssltalsslrklNLMATGFKGTFDVQeldslsnleeldmsdNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYlllsnnslqgqlFSkknnltklkrlnlDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS
Disordered region (IsUnstruct)
****************SVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS**********
Disordered Region (DISOPRED)
LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP*
Disordered Region (DISEMBL)
LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS
Disordered Region (DISPRO)
*SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	459	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.973	0.357	0.318	6e-44
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.971	0.356	0.317	2e-43
Q9FL28	1173	LRR receptor-like serine/	no	no	0.980	0.383	0.314	6e-43
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.941	0.380	0.316	2e-40
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.973	0.375	0.317	3e-40
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.969	0.439	0.318	3e-39
P93194	1109	Receptor-like protein kin	N/A	no	0.962	0.398	0.310	7e-39
Q9LHP4	1141	Receptor-like protein kin	no	no	0.978	0.393	0.317	7e-38
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.962	0.401	0.301	2e-37
C0LGJ1	1106	Probable LRR receptor-lik	no	no	0.982	0.407	0.297	4e-37

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  178 bits (452), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 155/486 (31%), Positives = 240/486 (49%), Gaps = 39/486 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNM-LESLDLSG 57
           L NL+ LDLS N+    +      +S L +L LA N L GS+  +I   N  LE L LSG
Sbjct: 286 LGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSG 345

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGT-----FDVQEL------------------D 94
            + +  I   L+   SL++L+L      G+     F++ EL                   
Sbjct: 346 TQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSIS 405

Query: 95  SLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 154
           +L+NL+ L +  N ++   +PK+   LRKL  L L     R   ++   IG+  SLK + 
Sbjct: 406 NLTNLQWLVLYHNNLEG-KLPKEISALRKLEVLFL--YENRFSGEIPQEIGNCTSLKMID 462

Query: 155 LKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNL 214
           +  N+F   +  + G   L  L  L++ +N+ +G LP  L N   L +L + DNQL+G++
Sbjct: 463 MFGNHFEGEIPPSIG--RLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSI 520

Query: 215 SSSPLMHLTSIEVLLLSNNHFQ--IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKN 272
            SS    L  +E L+L NN  Q  +P SL    N +++ + H  N L+G    P     +
Sbjct: 521 PSS-FGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSH--NRLNGTIH-PLCGSSS 576

Query: 273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332
            ++ D++ N  +  IP+E+G    NL  L +  N   G IP + G +  L  LD+S+N L
Sbjct: 577 YLSFDVTNNGFEDEIPLELGNS-QNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNAL 635

Query: 333 TGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNC 392
           TG IP  L + C  L ++ L+NN L G +      L++L  L L  N F+  +P  L NC
Sbjct: 636 TGTIPLQLVL-CKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNC 694

Query: 393 SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN 452
           + L  L +  N + GSIP  IGN+  L+ + +  N   G +P    +L  L  L LS+N+
Sbjct: 695 TKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNS 754

Query: 453 IAGSLP 458
           + G +P
Sbjct: 755 LTGEIP 760

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 240/463 (51%), Gaps = 17/463 (3%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGL-SSLKNLSLAYNRLEGSINIEGMNM--LESLDLSG 57
           ++ L+FL L+ N  + S+  ++    +SLK L L+  +L G I  E  N   L+ LDLS 
Sbjct: 311 MNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSN 370

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
           N     I  SL  L  L  L L     +GT     + +L+NL+E  +  N ++   VPK+
Sbjct: 371 NTLTGQIPDSLFQLVELTNLYLNNNSLEGTLS-SSISNLTNLQEFTLYHNNLEG-KVPKE 428

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
              L KL  + L   R      V   IG+   L+ +    N  +  + ++ G   L  L 
Sbjct: 429 IGFLGKLEIMYLYENRFSGEMPV--EIGNCTRLQEIDWYGNRLSGEIPSSIG--RLKDLT 484

Query: 178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ- 236
            L++  N+ +G++P  L N   + V+ + DNQL+G++ SS    LT++E+ ++ NN  Q 
Sbjct: 485 RLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSS-FGFLTALELFMIYNNSLQG 543

Query: 237 -IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 295
            +P SL    N +++    ++N  +G    P     + ++ D++ N  +G IP+E+GK  
Sbjct: 544 NLPDSLINLKNLTRINF--SSNKFNGSIS-PLCGSSSYLSFDVTENGFEGDIPLELGKS- 599

Query: 296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 355
            NL  L +  N F G IP +FG ++ L  LD+S N L+G IP  L + C  L ++ L+NN
Sbjct: 600 TNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGL-CKKLTHIDLNNN 658

Query: 356 SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGN 415
            L G + +    L  L  L L  N F+G +P  + + +++  L++  N + GSIP  IGN
Sbjct: 659 YLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGN 718

Query: 416 ISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
           +  L+A+ + +N L GP+PS   +L  L  L LS+N + G +P
Sbjct: 719 LQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIP 761

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  175 bits (444), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 152/484 (31%), Positives = 222/484 (45%), Gaps = 34/484 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGN 58
           L+ L+ LDL+ NSF   + + +  L+ L  L L  N   GSI   I  +  +  LDL  N
Sbjct: 95  LTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNN 154

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
             +  +   +   SSL  +        G    + L  L +L+    + N +    +P   
Sbjct: 155 LLSGDVPEEICKTSSLVLIGFDYNNLTGKIP-ECLGDLVHLQMFVAAGNHLTG-SIPVSI 212

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
             L  L  LDLSG ++    K+    G+  +L++L L  N     +    G C  +   +
Sbjct: 213 GTLANLTDLDLSGNQLT--GKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLE 270

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIP 238
           LY   N   G +P  L NL  L+ L +  N+LT ++ SS L  LT +  L LS NH   P
Sbjct: 271 LY--DNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSS-LFRLTQLTHLGLSENHLVGP 327

Query: 239 ISLE-PFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPN 297
           IS E  F    ++   H+NN  +G F     + +N+  L + +N + G +P ++G +L N
Sbjct: 328 ISEEIGFLESLEVLTLHSNN-FTGEFPQSITNLRNLTVLTVGFNNISGELPADLG-LLTN 385

Query: 298 LGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA---------------- 341
           L  LS   N   G IPSS  +   L  LDLS+NQ+TGEIP                    
Sbjct: 386 LRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTG 445

Query: 342 ------MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL 395
                   C NLE L +++N+L G L      L KL+ L +  N   G IP  + N   L
Sbjct: 446 EIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDL 505

Query: 396 QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 455
             LY+  N  TG IP  + N++ L  + M  N LEGPIP E   +  L +LDLS N  +G
Sbjct: 506 NILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSG 565

Query: 456 SLPS 459
            +P+
Sbjct: 566 QIPA 569

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 146/461 (31%), Positives = 231/461 (50%), Gaps = 29/461 (6%)

Query: 10  SHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGNKFNSSILSS 67
           S+N     + +SL  L SL+ L L +N L+G++   I   + L  L  S N+    I ++
Sbjct: 194 SYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAA 253

Query: 68  LTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRK-LRF 126
             AL  L  L+L    F GT     L   ++L  + +  N   ++V P+     R  L+ 
Sbjct: 254 YGALPKLEVLSLSNNNFSGTVPFS-LFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQV 312

Query: 127 LDLSGLRIRDGSKVLHSIGSFP-------SLKTLYLKSNNFAKTVTTTQGLCELVHLQDL 179
           LDL   RI          G FP       SLK L +  N F+  +    G   L  L++L
Sbjct: 313 LDLQENRIS---------GRFPLWLTNILSLKNLDVSGNLFSGEIPPDIG--NLKRLEEL 361

Query: 180 YIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ--I 237
            +  N   G +P  +    SL VL    N L G +    L ++ +++VL L  N F   +
Sbjct: 362 KLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEF-LGYMKALKVLSLGRNSFSGYV 420

Query: 238 PISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPN 297
           P S+       +L +    N+L+G F +   +  ++  LD+S N+  G +PV I   L N
Sbjct: 421 PSSMVNLQQLERLNL--GENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISN-LSN 477

Query: 298 LGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSL 357
           L FL+++ N F+G IP+S G++  L  LDLS   ++GE+P  L+ G  N++ + L  N+ 
Sbjct: 478 LSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELS-GLPNVQVIALQGNNF 536

Query: 358 QGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNIS 417
            G +    ++L  L+ +NL  N F G+IP++      L  L +SDN I+GSIP  IGN S
Sbjct: 537 SGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCS 596

Query: 418 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
            L+ + +  N L G IP++  +L  L++LDL +NN++G +P
Sbjct: 597 ALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIP 637

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  166 bits (421), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 152/478 (31%), Positives = 230/478 (48%), Gaps = 31/478 (6%)

Query: 1   LSNLKFLD---LSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE--GMNMLESLDL 55
           +   K LD   L++N F+  +   +     LK+LSLA N L GSI  E  G   LE++DL
Sbjct: 325 MGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDL 384

Query: 56  SGNKFNSSILSSLTALSSLRKLNLMATGFKGTF--DVQELDSLSNLEELDMSDNEIDNLV 113
           SGN  + +I       SSL +L L      G+   D+ +L     L  LD+  N      
Sbjct: 385 SGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLP----LMALDLDSNNFTG-E 439

Query: 114 VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL 173
           +PK     +    ++ +    R    +   IG+  SLK L L  N     +    G  +L
Sbjct: 440 IPKSL--WKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIG--KL 495

Query: 174 VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
             L  L ++ N F G +P  L + TSL  L +  N L G +    +  L  ++ L+LS N
Sbjct: 496 TSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDK-ITALAQLQCLVLSYN 554

Query: 234 HFQIPISLEPFFNYSKLK-----------IFH-ANNSLSGPFRLPTRSRKNIIALDISYN 281
           +    I  +P   + +++           IF  + N LSGP          ++ + +S N
Sbjct: 555 NLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNN 614

Query: 282 KLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA 341
            L G IP  + + L NL  L ++ NA  GSIP   G+   L  L+L+NNQL G IPE   
Sbjct: 615 HLSGEIPASLSR-LTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFG 673

Query: 342 MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYIS 401
           +   +L  L L+ N L G + +   NL +L  ++L  N+  G++   LS    L GLYI 
Sbjct: 674 L-LGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIE 732

Query: 402 DNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
            N  TG IP+ +GN++ L+ + + +N L G IP++ C L  LE L+L+KNN+ G +PS
Sbjct: 733 QNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPS 790

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 234/459 (50%), Gaps = 14/459 (3%)

Query: 3   NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNS 62
           N++ LDL+  +    +  S++ LSSL + +++ N  E S+  + +  L+S+D+S N F+ 
Sbjct: 72  NVEKLDLAGMNLTGKISDSISQLSSLVSFNISCNGFE-SLLPKSIPPLKSIDISQNSFSG 130

Query: 63  SILSSLTALSSLRKLNLMATG--FKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
           S+   L +  SL  ++L A+G    G    ++L +L +LE LD+  N      +P  ++ 
Sbjct: 131 SLF--LFSNESLGLVHLNASGNNLSGNL-TEDLGNLVSLEVLDLRGNFFQG-SLPSSFKN 186

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
           L+KLRFL LSG  +    ++   +G  PSL+T  L  N F   +    G    +   DL 
Sbjct: 187 LQKLRFLGLSGNNLT--GELPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLA 244

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
           I +    G +P  L  L SL  L + +N  TG +    +  +T+++VL  S+N     I 
Sbjct: 245 IGK--LSGEIPSELGKLKSLETLLLYENNFTGTIPRE-IGSITTLKVLDFSDNALTGEIP 301

Query: 241 LEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF 300
           +E     +   +    N LSG       S   +  L++  N L G +P ++GK  P L +
Sbjct: 302 MEITKLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSP-LQW 360

Query: 301 LSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ 360
           L ++ N+F+G IPS+  +  +L  L L NN  TG+IP  L+  C +L  + + NN L G 
Sbjct: 361 LDVSSNSFSGEIPSTLCNKGNLTKLILFNNTFTGQIPATLST-CQSLVRVRMQNNLLNGS 419

Query: 361 LFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLD 420
           +      L KL+RL L GN   G IP  +S+  SL  +  S N I  S+P+ I +I  L 
Sbjct: 420 IPIGFGKLEKLQRLELAGNRLSGGIPGDISDSVSLSFIDFSRNQIRSSLPSTILSIHNLQ 479

Query: 421 AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           A ++ DN + G +P +F     L  LDLS N + G++PS
Sbjct: 480 AFLVADNFISGEVPDQFQDCPSLSNLDLSSNTLTGTIPS 518

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  162 bits (409), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 151/486 (31%), Positives = 240/486 (49%), Gaps = 44/486 (9%)

Query: 4   LKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRL------------------------E 39
           L+ +DLS NSF  ++  +L  L +L+NLSL +N L                         
Sbjct: 118 LEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLN 177

Query: 40  GSI--NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLS 97
           GSI  NI  M+ L +L L  N+F+  + SSL  +++L++L L      GT  V  L++L 
Sbjct: 178 GSIPSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVT-LNNLE 236

Query: 98  NLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKS 157
           NL  LD+ +N +    +P D+   +++  + LS  +   G  +   +G+  SL+     S
Sbjct: 237 NLVYLDVRNNSLVG-AIPLDFVSCKQIDTISLSNNQFTGG--LPPGLGNCTSLREFGAFS 293

Query: 158 NNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSS 217
              +  + +  G  +L  L  LY+  N F G +P  L    S+  L +  NQL G +   
Sbjct: 294 CALSGPIPSCFG--QLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGE 351

Query: 218 PLMHLTSIEVLLLSNNHF--QIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIA 275
            L  L+ ++ L L  N+   ++P+S+    +   L+++   N+LSG   +     K +++
Sbjct: 352 -LGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQ--NNLSGELPVDMTELKQLVS 408

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335
           L +  N   G IP ++G    +L  L +T N F G IP +      L  L L  N L G 
Sbjct: 409 LALYENHFTGVIPQDLGAN-SSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGS 467

Query: 336 IPEHLAMGCFNLEYLLLSNNSLQGQL--FSKKNNLTKLKRLNLDGNHFIGDIPESLSNCS 393
           +P  L  GC  LE L+L  N+L+G L  F +K NL      +L GN+F G IP SL N  
Sbjct: 468 VPSDLG-GCSTLERLILEENNLRGGLPDFVEKQNLL---FFDLSGNNFTGPIPPSLGNLK 523

Query: 394 SLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
           ++  +Y+S N ++GSIP  +G++  L+ + +  N L+G +PSE      L  LD S N +
Sbjct: 524 NVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLL 583

Query: 454 AGSLPS 459
            GS+PS
Sbjct: 584 NGSIPS 589

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  158 bits (400), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 155/488 (31%), Positives = 234/488 (47%), Gaps = 39/488 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE--GMNMLESLDLSGN 58
           L NL+ L L+ N     +   ++  S LK+L L  N L GSI  E   ++ LE + + GN
Sbjct: 152 LRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGN 211

Query: 59  K-FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLV---- 113
           K  +  I S +   S+L  L L  T   G      L  L  LE L +    I   +    
Sbjct: 212 KEISGQIPSEIGDCSNLTVLGLAETSVSGNLP-SSLGKLKKLETLSIYTTMISGEIPSDL 270

Query: 114 -------------------VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 154
                              +P++   L KL  L L    +  G  +   IG+  +LK + 
Sbjct: 271 GNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGG--IPEEIGNCSNLKMID 328

Query: 155 LKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNL 214
           L  N  + ++ ++ G   L  L++  I  N F GS+P  ++N +SL  L +  NQ++G L
Sbjct: 329 LSLNLLSGSIPSSIG--RLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISG-L 385

Query: 215 SSSPLMHLTSIEVLLLSNNHFQ--IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKN 272
             S L  LT + +    +N  +  IP  L    +   L +  + NSL+G         +N
Sbjct: 386 IPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDL--SRNSLTGTIPSGLFMLRN 443

Query: 273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332
           +  L +  N L G IP EIG    +L  L + FN   G IPS  G +  + +LD S+N+L
Sbjct: 444 LTKLLLISNSLSGFIPQEIGNC-SSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRL 502

Query: 333 TGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNC 392
            G++P+ +   C  L+ + LSNNSL+G L +  ++L+ L+ L++  N F G IP SL   
Sbjct: 503 HGKVPDEIG-SCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRL 561

Query: 393 SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI-LDLSKN 451
            SL  L +S N  +GSIPT +G  S L  + +  N L G IPSE   ++ LEI L+LS N
Sbjct: 562 VSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSN 621

Query: 452 NIAGSLPS 459
            + G +PS
Sbjct: 622 RLTGKIPS 629

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 226/467 (48%), Gaps = 25/467 (5%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLE--SLDLSGNK 59
           S+L+ L L++N F+  +   +  L SL+NL +  NR+ GS+ +E  N+L    L    N 
Sbjct: 121 SSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNN 180

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
            +  +  S+  L  L           G+    E+    +L  L ++ N++    +PK+  
Sbjct: 181 ISGQLPRSIGNLKRLTSFRAGQNMISGSLP-SEIGGCESLVMLGLAQNQLSG-ELPKEIG 238

Query: 120 GLRKLRFL-----DLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELV 174
            L+KL  +     + SG   R+       I +  SL+TL L  N     +    G  +L 
Sbjct: 239 MLKKLSQVILWENEFSGFIPRE-------ISNCTSLETLALYKNQLVGPIPKELG--DLQ 289

Query: 175 HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH 234
            L+ LY+ RN   G++P  + NL+    +   +N LTG +    L ++  +E+L L  N 
Sbjct: 290 SLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLE-LGNIEGLELLYLFENQ 348

Query: 235 FQ--IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG 292
               IP+ L    N SKL +  + N+L+GP  L  +  + +  L +  N L G IP ++G
Sbjct: 349 LTGTIPVELSTLKNLSKLDL--SINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLG 406

Query: 293 KVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 352
               +L  L ++ N  +G IPS     +++I L+L  N L+G IP  +   C  L  L L
Sbjct: 407 WY-SDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITT-CKTLVQLRL 464

Query: 353 SNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTW 412
           + N+L G+  S       +  + L  N F G IP  + NCS+LQ L ++DN  TG +P  
Sbjct: 465 ARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPRE 524

Query: 413 IGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           IG +S L  + +  N L G +PSE      L+ LD+  NN +G+LPS
Sbjct: 525 IGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPS 571

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ1|Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 166/558 (29%), Positives = 254/558 (45%), Gaps = 107/558 (19%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           L+ L +LDLS N+    +   L+   +LK+L+L++N LEG +++ G++ LE LDLS N+ 
Sbjct: 110 LTELTYLDLSRNTIEGEIPDDLSRCHNLKHLNLSHNILEGELSLPGLSNLEVLDLSLNRI 169

Query: 61  NSSILSSLTALS-SLRKLNLMATGFKGTFD--------VQELDSLSN------------L 99
              I SS      SL   NL    F G  D        ++ +D  SN            L
Sbjct: 170 TGDIQSSFPLFCNSLVVANLSTNNFTGRIDDIFNGCRNLKYVDFSSNRFSGEVWTGFGRL 229

Query: 100 EELDMSDNEIDNLVVPKDYRGLRKLRFLDLSG----------------LRIRD--GSK-- 139
            E  ++DN +   +    +RG   L+ LDLSG                L + +  G+K  
Sbjct: 230 VEFSVADNHLSGNISASMFRGNCTLQMLDLSGNAFGGEFPGQVSNCQNLNVLNLWGNKFT 289

Query: 140 --VLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANL 197
             +   IGS  SLK LYL +N F++ +  T  L  L +L  L + RN F G +       
Sbjct: 290 GNIPAEIGSISSLKGLYLGNNTFSRDIPET--LLNLTNLVFLDLSRNKFGGDIQEIFGRF 347

Query: 198 TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF--QIPISLEPFFNYSKLKIFHA 255
           T ++ L +  N   G ++SS ++ L ++  L L  N+F  Q+P  +    +   L +  A
Sbjct: 348 TQVKYLVLHANSYVGGINSSNILKLPNLSRLDLGYNNFSGQLPTEISQIQSLKFLIL--A 405

Query: 256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSS 315
            N+ SG       +   + ALD+S+NKL G IP   GK L +L +L +  N+ +G IP  
Sbjct: 406 YNNFSGDIPQEYGNMPGLQALDLSFNKLTGSIPASFGK-LTSLLWLMLANNSLSGEIPRE 464

Query: 316 FGDMNSLIYLDLSNNQLTGEI-PEHLAMG-----------------------C------- 344
            G+  SL++ +++NNQL+G   PE   MG                       C       
Sbjct: 465 IGNCTSLLWFNVANNQLSGRFHPELTRMGSNPSPTFEVNRQNKDKIIAGSGECLAMKRWI 524

Query: 345 ------FNLEYLLLSNNS--------LQGQ----LFSKKNNLTKLK---RLNLDGNHFIG 383
                 FN  Y +L+  S        L+G     + S  + +  LK    L L GN F G
Sbjct: 525 PAEFPPFNFVYAILTKKSCRSLWDHVLKGYGLFPVCSAGSTVRTLKISAYLQLSGNKFSG 584

Query: 384 DIPESLSNCSSLQGLYISDNDITGSIPTWIGNI--SFLDAIIMPDNHLEGPIPSEFCQLD 441
           +IP S+S    L  L++  N+  G +P  IG +  +FL+   +  N+  G IP E   L 
Sbjct: 585 EIPASISQMDRLSTLHLGFNEFEGKLPPEIGQLPLAFLN---LTRNNFSGEIPQEIGNLK 641

Query: 442 YLEILDLSKNNIAGSLPS 459
            L+ LDLS NN +G+ P+
Sbjct: 642 CLQNLDLSFNNFSGNFPT 659

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	459
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.969	0.303	0.436	7e-73
296082108	975	unnamed protein product [Vitis vinifera]	0.908	0.427	0.418	2e-71
255581263	912	serine-threonine protein kinase, plant-t	0.932	0.469	0.426	4e-69
224113693	949	predicted protein [Populus trichocarpa]	0.928	0.448	0.391	4e-63
224124490	981	predicted protein [Populus trichocarpa]	0.928	0.434	0.340	4e-61
224120284	929	predicted protein [Populus trichocarpa]	0.991	0.489	0.343	1e-60
296084515	798	unnamed protein product [Vitis vinifera]	0.784	0.451	0.387	6e-59
224106950	863	predicted protein [Populus trichocarpa]	0.934	0.497	0.366	7e-58
224142723	923	predicted protein [Populus trichocarpa]	0.971	0.483	0.344	1e-56
224144186	973	predicted protein [Populus trichocarpa]	0.930	0.438	0.351	6e-56

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 208/476 (43%), Positives = 267/476 (56%), Gaps = 31/476 (6%)

Query: 1    LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNML---ESLDLSG 57
            L  L+ L L  N FN S L SL  LS LK L L  N+LEGS+ +  +N L   E LDLS 
Sbjct: 642  LRKLRVLHLETNDFNISTLKSLGRLSLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSS 701

Query: 58   NKFNSSILSSLTALSSLRKLNLMATGFKGT-FDVQELDSLSNLEELDMSDNEIDNLVVPK 116
               +SSIL  +  ++SL+ L+L + G  G+   +Q L  L NL+ELD+SDN  +  V P 
Sbjct: 702  TNISSSILQIVEVMTSLKALSLRSNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPC 761

Query: 117  DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176
                L  LR LDLS  R   G+           L+ L L  N F +T        +   L
Sbjct: 762  -LGNLTSLRALDLSKNRF-SGNLDSSLFAGLMKLEFLSLSHNVF-QTFPPISSFAKHSKL 818

Query: 177  Q--DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSI--------- 225
            +  DL    N  +         L S     VP  QL     SS ++   SI         
Sbjct: 819  EVLDLICGNNTLL---------LESEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHD 869

Query: 226  -EVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKL 283
              V+ LSN+  +         N ++L+  +  NNSL+G F LP R      A+DIS N L
Sbjct: 870  LRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLL 929

Query: 284  QGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG 343
            QG +P  I   LPNL FL+++ N+F GSIPS FG M  L++LDLSNN  TG IPE LAMG
Sbjct: 930  QGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMG 988

Query: 344  CFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDN 403
            C +LEYL+LS N L GQ+F + +NL  L+ L LD NHF G IP+ LSN S L+ LY+S N
Sbjct: 989  CPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPD-LSNSSGLERLYVSHN 1047

Query: 404  DITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
             I+G +P WIGN+S L A++MP+N LEGPIP EFC LD LE+LDLS NN++GSLPS
Sbjct: 1048 SISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPS 1103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082108|emb|CBI21113.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 210/502 (41%), Positives = 272/502 (54%), Gaps = 85/502 (16%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN-IEGMNMLESLDLSGNK 59
           L+NL+ LDLS N+ + S+L+SL  LSSLK+LSL  N LEGSI  +  ++ LE LDLS N 
Sbjct: 126 LNNLELLDLSSNTLDISMLASLTELSSLKSLSLGTNILEGSIQELAALHNLEELDLSNNL 185

Query: 60  FNSSILSS-LTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
             S I +  L +L  LR L+L   GF  +  ++ L  LS L+EL +  N+++ L      
Sbjct: 186 LESFITTKGLKSLRKLRVLHLETNGFNIS-TLKSLGRLSLLKELYLGGNKLEEL------ 238

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
             LR L  LDLS   I   S +L  +    SLK L L+SN    + T  QGLC+L +LQ+
Sbjct: 239 NNLRNLEVLDLSSTNI--SSSILQIVEVMTSLKALSLRSNGINGSQTALQGLCKLRNLQE 296

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIP 238
           L +  N F GS+  CL NLTSLR L +  N+ +GNL SS    L  +E L LS+N FQ  
Sbjct: 297 LDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTF 356

Query: 239 ISLEPFFNYSKLKIFH-------------------------------------------- 254
             +  F  +SKL++F                                             
Sbjct: 357 PPISSFAKHSKLEVFRLSSCILKTGSIPSFLHHQHDLRVVDLSNSSLEEDFPTWLMKNNT 416

Query: 255 -------ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNA 307
                   NNSL+G F LP R      A+DIS N LQG +P  I   LPNL FL+++ N+
Sbjct: 417 RLEELNLKNNSLTGYFHLPYRPHIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNS 476

Query: 308 FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNN 367
           F GSIP SFG M  L++LDLSNN  TG IPE LAMGC +LEYL+LS N L GQ+F + +N
Sbjct: 477 FEGSIP-SFGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSN 535

Query: 368 LTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDN 427
           L  L+ L LD                      +S N I+G +P WIGN+S L A++MP+N
Sbjct: 536 LPSLRHLELD----------------------VSHNSISGKLPGWIGNMSNLAALVMPNN 573

Query: 428 HLEGPIPSEFCQLDYLEILDLS 449
            LEGPIP EFC LD LE+LDLS
Sbjct: 574 SLEGPIPVEFCSLDALELLDLS 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 209/490 (42%), Positives = 283/490 (57%), Gaps = 62/490 (12%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGM---NMLESLDLSG 57
           LS+L+ LDLS+NSFN S+LSSL+  SSLK+L+L +N  E  I  + +     LE L L  
Sbjct: 127 LSSLEVLDLSYNSFNESILSSLSEFSSLKSLNLGFNPFEVPIQAQDLPNFENLEELYLDK 186

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTF-DVQELDSLSNLEELDMSDNEIDNLVVPK 116
            +  +S L ++  ++SL+ L+L   G  G   +VQ L  L +L  LD+S NE    ++P 
Sbjct: 187 IELENSFLQTVGVMTSLKVLSLSGCGLTGALPNVQGLCELIHLRVLDVSSNEFHG-ILPW 245

Query: 117 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176
               L  L+ LDLS                          SN F   ++ +  L  L  L
Sbjct: 246 CLSNLTSLQLLDLS--------------------------SNQFVGDISNSP-LKILKSL 278

Query: 177 QDLYIDRNDFIGSLPWCLA---NLTSLRVLHVPDNQ--LTGNLSSSPLMHLTSIEV---- 227
            DL +  N F   +P+ L    N ++L+ +   +N   L   L S+P   L SI      
Sbjct: 279 VDLDVSNNHF--QVPFSLGPFFNHSNLKHIRGQNNAIYLEAELHSAPRFQLISIIFSGYG 336

Query: 228 -------LLLSNNHFQIP----ISLEPFF------NYSKLKIFH-ANNSLSGPFRLPTRS 269
                   L   N+ Q      +SL+  F      N ++L+I    NNSLSG  +LP   
Sbjct: 337 ICGTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHP 396

Query: 270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSN 329
             N++ALDIS N +  HIP+EIG  LP L  L+++ N F+GSIPSSFG+MNSL  LDLSN
Sbjct: 397 HVNLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSN 456

Query: 330 NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESL 389
           NQL+G IPEHLA GCF+L  L+LSNNSLQGQ+FSK+ NLT L  L LD NHF G IP+SL
Sbjct: 457 NQLSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSL 516

Query: 390 SNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS 449
           S  S+L  + +SDN ++G IP WIGN+S+L  +I+ +N L+GPIP EFCQL YLE+LDL+
Sbjct: 517 SK-SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLA 575

Query: 450 KNNIAGSLPS 459
            N+++G LPS
Sbjct: 576 NNSVSGILPS 585

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113693|ref|XP_002332513.1| predicted protein [Populus trichocarpa] gi|222832619|gb|EEE71096.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 188/480 (39%), Positives = 264/480 (55%), Gaps = 54/480 (11%)

Query: 2   SNLKFLDLSHNSFNN-SVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNM-------LESL 53
           S L+ L+LS N FN+ S+LS L GLS+LK+L L++N+L GS +  G  +       LE+L
Sbjct: 132 SKLELLNLSDNRFNDKSILSCLTGLSTLKSLDLSHNQLTGSASFYGFEIKSSHLRKLENL 191

Query: 54  DLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDV---------QELDSLSNLEELDM 104
           DLS N FN +ILS L   SSL+ LNL      G+  V           L  L +L+ L +
Sbjct: 192 DLSYNMFNDNILSYLGGFSSLKSLNLSGNMLLGSTTVNGSRKLELLHSLGVLPSLKTLSL 251

Query: 105 SDNEIDNLVVPKDY----RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160
            D  +    + ++       L +L +LD + L I      L +IG+ P+LK L +   + 
Sbjct: 252 KDTNLSWTSISQETFFNSTTLEEL-YLDRTSLPI----NFLQNIGALPALKVLSVGECDL 306

Query: 161 AKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLM 220
             T+   QGLCEL +L+ L +  N+  GSLP CL NL+SL++L V  NQ TGN++SSPL 
Sbjct: 307 HDTLPA-QGLCELKNLEQLDLYGNNLGGSLPDCLGNLSSLQLLDVSINQFTGNINSSPLT 365

Query: 221 HLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISY 280
           ++ S+E   LSNN F+ PI ++PF N+S LK F                       +IS 
Sbjct: 366 NIISLEFRSLSNNLFEFPILMKPFMNHSSLKFFD----------------------NISN 403

Query: 281 NKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHL 340
           N + G +   I  +  NL  L +  N F G IPS  G+++SL  LDLSNNQL+    E L
Sbjct: 404 NNMNGQVSKNICLIFSNLDTLRMAKNGFTGCIPSCLGNISSLEVLDLSNNQLSTVKLEWL 463

Query: 341 AMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ-GLY 399
                 L +L LSNN+L G+L     N + L  L L GN+F G IP+       +   L 
Sbjct: 464 TA----LTFLKLSNNNLGGKLPDSVFNSSGLYFLYLSGNNFWGQIPDFPPPSWKIWFELD 519

Query: 400 ISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           +S+N  +G +P W+ N + L AI +  NH +GPIPS+FC+L+ LE LDLSKN + GS+PS
Sbjct: 520 LSNNQFSGMLPRWLVNSTLLCAIDLSKNHFKGPIPSDFCKLEVLEYLDLSKNKLFGSIPS 579

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124490|ref|XP_002330036.1| predicted protein [Populus trichocarpa] gi|222871461|gb|EEF08592.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 186/547 (34%), Positives = 274/547 (50%), Gaps = 121/547 (22%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNML-------ESL 53
           L NLK L L+ N FN+S+L+SL+G S+LK+L L+ NR   +I+++G  +L       E L
Sbjct: 92  LRNLKELYLNDNKFNDSILTSLSGFSTLKSLYLSNNRFTVTIDLKGFQVLASGLRNLEQL 151

Query: 54  DLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLV 113
           DLS NK N S+LSSL+  S+L+ L+L    F G+  +                       
Sbjct: 152 DLSYNKLNDSVLSSLSGFSTLKFLDLSNNRFTGSTGLN---------------------- 189

Query: 114 VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL 173
                 GLRKL  L L     ++ S ++ S+G+ PSLKTL+ +   +++     +G CEL
Sbjct: 190 ------GLRKLETLYLDSTDFKE-SILIESLGALPSLKTLHAR---YSRFTHFGKGWCEL 239

Query: 174 VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
            +L+ L++  N+  G LP C  NL+SL++L +  NQL GN++ S + HLT +E L +SNN
Sbjct: 240 KNLEHLFLSGNNLKGVLPPCFGNLSSLQILDLSYNQLEGNIAFSHISHLTQLEYLSVSNN 299

Query: 234 HFQIPISLEPFFNYSKLKIFHANNS--LSGP--------FRLPT---------------- 267
           +FQ+PIS   F N+S LK F  +N+  ++ P        FRL                  
Sbjct: 300 YFQVPISFGSFMNHSNLKFFECDNNELIAAPSFQPLVPKFRLRVFSASNCTPKPLEAGFP 359

Query: 268 ---RSRKNIIALDISYNK------------------------------------------ 282
              +S+ +++ +D+S+NK                                          
Sbjct: 360 NFLQSQYDLVFVDLSHNKFVGESFPSWLFENNTKLNRLYLRDTSFIGPLQLPQHPTPNLQ 419

Query: 283 --------LQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTG 334
                   + G I   I  + P L    +  N+  G IP  FG+M+SL YLDLSNN ++ 
Sbjct: 420 TVDMSGNSIHGQIARNICSIFPRLKNFMMANNSLTGCIPPCFGNMSSLEYLDLSNNHMSC 479

Query: 335 EIPEH-LAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCS 393
           E+ EH L     +L  L LSNN+ +G+L     N+T L+ L LDGN F G +  + S  S
Sbjct: 480 ELLEHNLPTVGSSLWSLKLSNNNFKGRLPLSVFNMTSLEYLFLDGNKFAGQVSGTFSLAS 539

Query: 394 SLQGLYISDNDITGSIPTWIGNISF--LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 451
           S     IS+N ++G +P  IGN S     AI +  NH EG IP E+    +LE LDLS+N
Sbjct: 540 SFSWFDISNNLLSGMLPRGIGNSSIYRFQAIDLSRNHFEGTIPKEYFNSYWLEFLDLSEN 599

Query: 452 NIAGSLP 458
           N++GSLP
Sbjct: 600 NLSGSLP 606

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 187/544 (34%), Positives = 271/544 (49%), Gaps = 89/544 (16%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEG-------MNMLESL 53
           L NL+ L+L  N FN+S+ SSL GLSSLKNLSL  N +EG+I++EG       M+ LE L
Sbjct: 129 LGNLEILELGQNKFNSSIFSSLGGLSSLKNLSLHNNEIEGTISVEGGEDEVLKMSNLEYL 188

Query: 54  DLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDV----------------------- 90
           DL GN+F++SILSS   LSSL+ L L     KGTF++                       
Sbjct: 189 DLGGNRFDNSILSSFKGLSSLKNLGLEKNHLKGTFNMKGIRGFGNLSRVRLFNITANGRR 248

Query: 91  ------QELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI 144
                 Q L  L NL+ LD+ +N  +  ++ +    L+ L  LDLS   + +    L +I
Sbjct: 249 ISLPLLQSLAKLPNLKTLDLGNNNFEGTILAQALPSLKNLHKLDLSSSTLDN--SFLQTI 306

Query: 145 GSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLH 204
           G   +L +L L     + ++   +GLCEL HLQ L I  N   G LP CLANLTSL+ + 
Sbjct: 307 GRITTLTSLKLNGCRLSGSIPIAEGLCELKHLQSLDISNNSLTGVLPKCLANLTSLKQID 366

Query: 205 VPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNS------ 258
           +  N   G++SSSPL+ LTSI+ L LS+N+FQIPISL  F N+S+LK F   N+      
Sbjct: 367 LSSNHFGGDISSSPLITLTSIQELRLSDNNFQIPISLRSFSNHSELKFFFGYNNEICAEL 426

Query: 259 ---------------LSG-------PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLP 296
                          LSG       PF      + N+  +  S  +++G +P  + +   
Sbjct: 427 EEHNLIPKFQLQRLHLSGQAYGGALPFPKFLFYQHNLREIYFSNMRMRGGVPNWLLENNT 486

Query: 297 NLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS 356
           NL  L +  N+ +G          SL  LD+S+N L   IP  +     +L +L +S N 
Sbjct: 487 NLHELFLVNNSLSGPFQLPIHPHVSLSQLDISDNHLDSHIPTEIGAYFPSLTFLSMSKNH 546

Query: 357 LQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNC---------SSLQG---------- 397
             G + S    ++ L  L+L  N+  G +P   S+          + LQG          
Sbjct: 547 FNGIIPSSFGYMSSLLVLDLSENNISGKLPSCFSSLPLVHVYLSQNKLQGSLEDAFHKSF 606

Query: 398 ----LYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
               L +S N +TG+I  WIG  S +  +++  N+LEG IP++ C+LD L  +DLS N  
Sbjct: 607 ELITLDLSHNQLTGNISEWIGEFSHMSYLLLGYNNLEGRIPNQLCKLDKLSFIDLSHNKF 666

Query: 454 AGSL 457
           +G +
Sbjct: 667 SGHI 670

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084515|emb|CBI25536.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 161/416 (38%), Positives = 231/416 (55%), Gaps = 56/416 (13%)

Query: 93  LDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKT 152
           L +L +L+ LD+SDN I++  + +  + L +L  L+L    +  G   +  I +   LK+
Sbjct: 34  LSALPSLKVLDLSDNHINSSQL-EGLKYLSRLEVLNLKWNSLMGGIPPI--ISTLSHLKS 90

Query: 153 LYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG 212
           L L+ NN   +++  +GLC+L +L+ L + RN F GSLP CL NLTSLR+L + +N  +G
Sbjct: 91  LTLRYNNLNGSLSM-EGLCKL-NLEALDLSRNGFEGSLPACLNNLTSLRLLDLSENDFSG 148

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIF------------------- 253
            + SS   +L S+E + LS+NHF+  I     FN+S+L +F                   
Sbjct: 149 TIPSSLFSNLKSLEYISLSDNHFEGSIHFGSLFNHSRLVVFDLASNNNWVLPSFLPSQYD 208

Query: 254 -------HAN-----------------------NSLSGPFRLPTRSR-KNIIALDISYNK 282
                  H N                       NSL+G   LP+ S+  +++ LD S N 
Sbjct: 209 LRMVDLSHNNITGDIPTWLLDNNTKLEYLSFGSNSLTGVLDLPSNSKHSHMLLLDFSSNC 268

Query: 283 LQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM 342
           + G +P  IG + P L  L+++ NA  G+IPSS GDM  L+ LDLSNN L+G++PEH+ M
Sbjct: 269 IHGELPPFIGSIFPGLEVLNLSRNALQGNIPSSMGDMEQLVSLDLSNNNLSGQLPEHMMM 328

Query: 343 GCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISD 402
           GC +L  L LSNNSL G L   K+NLT L  L+LD N+F G+I     N SSLQ L IS 
Sbjct: 329 GCISLLVLKLSNNSLHGTL-PTKSNLTDLFFLSLDNNNFSGEISRGFLNSSSLQALDISS 387

Query: 403 NDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
           N + G IP WIG+ S L  + +  NHL+G +P+  C+L+ L  LDLS N I  +LP
Sbjct: 388 NSLWGQIPNWIGDFSVLSTLSLSRNHLDGVVPTSLCKLNELRFLDLSHNKIGPTLP 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106950|ref|XP_002333589.1| predicted protein [Populus trichocarpa] gi|222837497|gb|EEE75876.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 187/510 (36%), Positives = 259/510 (50%), Gaps = 81/510 (15%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSL-AYNRLEGSINIEGMNMLESLDLSGNK 59
           LS+L+ L L   S +   L SL  LSSLKN+SL A N +  S     +  LE LDLS N 
Sbjct: 167 LSSLQSLYLDGCSLDEYSLQSLGALSSLKNMSLQALNGIVLSRGFLDLKNLEYLDLSYNT 226

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTF-DVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
            N+SI  ++  ++SLR L L +    G     Q   +L NLE LD+S N + N       
Sbjct: 227 LNNSIFQAIGTMTSLRTLILHSCRLDGRIPTTQGFFNLKNLEFLDLSSNTLSN------- 279

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
                                +L +I + PSLKTL+L++ +    + TTQGLC+L HLQ+
Sbjct: 280 --------------------NILQTIRTMPSLKTLWLQNCSLNGQLPTTQGLCDLNHLQE 319

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH---- 234
           LY++ ND  G LP CLAN+TSL+ L++  N L   +S SPL +L+ ++    S N     
Sbjct: 320 LYMNDNDLSGFLPPCLANMTSLQRLYLSSNHLKIPMSLSPLYNLSKLKSFYGSGNEIYAE 379

Query: 235 ---------FQIP-ISLE---------PFFNYSK-------------------------- 249
                    FQ+  +SL          P F Y +                          
Sbjct: 380 EDDHNLTPKFQLESLSLSNGGQNTRAFPKFLYHQFSLQSLDLTNIQIKGEFPNWLIENNT 439

Query: 250 -LKIFHANN-SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNA 307
            LK+    N SLSGPF LP  S  N+  L IS N  QG IP EIG     L  L ++ N 
Sbjct: 440 YLKLLSLENCSLSGPFLLPKSSHVNLSFLSISMNHFQGQIPSEIGAHFSGLEVLLMSDNG 499

Query: 308 FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNN 367
           FNGSIPSS G+M+ +  LDLSNN L G+IP  +     +LE+L LS N+L G L  +   
Sbjct: 500 FNGSIPSSLGNMSLMYELDLSNNSLQGQIPGWIG-NMSSLEFLDLSRNNLSGPLPPRFGT 558

Query: 368 LTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDN 427
            +KL+ + L  N   G I  + S+ S +  L +S ND+TG IP WI  +S L  +++  N
Sbjct: 559 SSKLRDVFLSRNRLQGPIAMAFSDSSEIFALDLSHNDLTGRIPEWIDRLSNLRFLLLSYN 618

Query: 428 HLEGPIPSEFCQLDYLEILDLSKNNIAGSL 457
           +LEG IP   C+LD L ++DLS N ++G++
Sbjct: 619 NLEGEIPIRLCRLDQLTVIDLSHNYLSGNI 648

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 198/574 (34%), Positives = 274/574 (47%), Gaps = 128/574 (22%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEG------MNMLESLD 54
           LSNL++LDL  N F+NS+LS +  LSSLK+L L YNRLEG I+++G       + LE LD
Sbjct: 114 LSNLEYLDLGINGFDNSILSYVERLSSLKSLYLNYNRLEGLIDLKGGYELTKSSNLEHLD 173

Query: 55  LSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDV-----QELDSLSNLEELDMSDN-- 107
           L  N+F++SILS +  +SSL+ L L     +G  D+     Q L S  NL  L + DN  
Sbjct: 174 LGYNRFDNSILSFVEGISSLKSLYLDYNRVEGLIDLKGSSFQFLGSFPNLTRLYLEDNDF 233

Query: 108 -----EIDNL-------------------------------------VVP-KDYRGLRKL 124
                E  NL                                     VVP + +  L+ L
Sbjct: 234 RGRILEFQNLSSLEYLYLDGSSLDEHSLQGLATPPSLIHLFLEDLGGVVPSRGFLNLKNL 293

Query: 125 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRN 184
            +LDL   R    + + H+IG+  SLK LYL   +    + T Q    + H        N
Sbjct: 294 EYLDLE--RSSLDNSIFHTIGTMTSLKILYLTDCSLNGQIPTAQDKLHMYH--------N 343

Query: 185 DFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSI--------EVLLLSNNH-- 234
           D  G LP CLANLTSL+ L +  N L   +S SPL +L+ +        E+     +H  
Sbjct: 344 DLSGFLPPCLANLTSLQHLDLSSNHLKIPVSLSPLYNLSKLNYFDGSGNEIYAEEEDHNL 403

Query: 235 ---FQI-----------PISLEPFF--------------------------NYSKLKIFH 254
              FQ+           P +   F                           N + L+  H
Sbjct: 404 SPKFQLEFLYLSSRGQGPGAFPKFLYHQVNLQYVDLTNIQMKGEFPNWLIENNTYLQELH 463

Query: 255 ANN-SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP 313
             N SL+GPF LP  S  N++ L IS N  QG IP EIG  LP L  L ++ N FNG+IP
Sbjct: 464 LENCSLTGPFLLPKNSHVNLLFLSISVNYFQGQIPSEIGAYLPRLEVLLMSDNGFNGTIP 523

Query: 314 SSFGDMNSLIYLD----------LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFS 363
           SS G+M+SL  LD          LSNN L G+IP  +     +LE+L LS N+  G L  
Sbjct: 524 SSLGNMSSLQVLDMFANVLTGRILSNNSLQGQIPGWIG-NMSSLEFLDLSGNNFSGPLPP 582

Query: 364 KKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAII 423
           +    +KL+ ++L  N   G I  +  N S ++ L +S ND+TG IP WIG  S L  ++
Sbjct: 583 RFGTSSKLRYVSLSRNKLHGPIAIAFYNSSKIEALDLSHNDLTGRIPEWIGRQSNLRFLL 642

Query: 424 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSL 457
           +  N+ EG IP + C+LD L ++DLS N + G++
Sbjct: 643 LSYNNFEGEIPIQLCRLDQLTLIDLSHNYLFGNI 676

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 180/512 (35%), Positives = 253/512 (49%), Gaps = 85/512 (16%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEG---MNMLESLDLSG 57
           LS LK L L   S +   L SL  L SLKNLSL    L G++   G   +  L+ LDLS 
Sbjct: 248 LSFLKELYLDGCSLDEHSLQSLGALPSLKNLSL--QELNGTVPYGGFLYLKNLKYLDLSY 305

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFD-VQELDSLSNLEELDMSDNEIDNLVVPK 116
           N  N+SI  ++  ++SL+ L L   G  G     Q   +L NLE LD+SDN +DN     
Sbjct: 306 NTLNNSIFQAIETMTSLKTLKLKGCGLNGQISSTQGFLNLKNLEYLDLSDNTLDN----- 360

Query: 117 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176
                                  +L SI +  SLKTL L+S      + TTQGLC+L HL
Sbjct: 361 ----------------------NILQSIRAMTSLKTLGLQSCRLNGRIPTTQGLCDLNHL 398

Query: 177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH-- 234
           Q+LY+  ND  G LP CLANLTSL+ L +  N L   +S SP  +L+ ++    S N   
Sbjct: 399 QELYMSDNDLSGFLPLCLANLTSLQQLSLSSNHLKIPMSLSPFHNLSKLKYFDGSGNEIF 458

Query: 235 -----------FQIPI----------SLEPFFNYSKLKIFH------------------- 254
                      FQ+               P F Y +  + +                   
Sbjct: 459 AEEDDRNMSSKFQLEYLYLSSRGQGAGAFPRFLYHQFSLRYLDLTNIQIKGEFPSWLIEN 518

Query: 255 ---------ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITF 305
                     N SLSGPF LP  S  N+  L IS N  +G IP EIG  LP L  L ++ 
Sbjct: 519 NTYLQELHLENCSLSGPFLLPKNSHVNLSFLSISMNHFRGQIPSEIGAHLPGLEVLFMSD 578

Query: 306 NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK 365
           N FNGSIP S G+++SL +LDLSNN L G+IP  +     +LE+L LS N+  G+   + 
Sbjct: 579 NGFNGSIPFSLGNISSLQWLDLSNNILQGQIPGWIG-NMSSLEFLDLSGNNFSGRFPPRF 637

Query: 366 NNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP 425
           +  + L+ + L  N   G I  +  + + +  L +S N++TG+IP WI  +S L  +++ 
Sbjct: 638 STSSNLRYVYLSRNKLQGPITMTFYDLAEIFALDLSHNNLTGTIPEWIDRLSNLRFLLLS 697

Query: 426 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGSL 457
            N+LEG IP +  +LD L ++DLS N+++G++
Sbjct: 698 YNNLEGEIPIQLSRLDRLTLIDLSHNHLSGNI 729

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	459
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.982	0.482	0.274	2.5e-44
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.976	0.448	0.273	9.2e-40
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.962	0.458	0.281	9.4e-38
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.976	0.394	0.276	9.6e-37
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.893	0.327	0.274	1.4e-36
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.732	0.308	0.324	2.3e-36
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.808	0.331	0.302	1.8e-35
TAIR|locus:2041150	1143	BRL2 "BRI1-like 2" [Arabidopsi	0.718	0.288	0.304	1.9e-24
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.893	0.328	0.281	9.6e-35
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.978	0.503	0.268	1e-34

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 2.5e-44, Sum P(2) = 2.5e-44
 Identities = 127/463 (27%), Positives = 204/463 (44%)

Query:     1 LSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSINIEGMN---MLESLDLSG 57
             L NLK +DLS N F                    YN ++G   I+G+     LE LDL  
Sbjct:   123 LRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLELLDLRA 182

Query:    58 NKFNXXXXXXXXXXXXXXXXNLMATGFKGTFDVQXXXXXXXXXXXXXXXNEIDNLVVPKD 117
             NK N                +L +  F  + ++Q               N +D  +  + 
Sbjct:   183 NKLNGSMQELIHLKKLKAL-DLSSNKFSSSMELQELQNLINLEVLGLAQNHVDGPIPIEV 241

Query:   118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
             +  L+ LR LDL G       ++   +GS   L+ L L SN  +  + ++     L  L+
Sbjct:   242 FCKLKNLRDLDLKGNHFV--GQIPLCLGSLKKLRVLDLSSNQLSGDLPSS--FSSLESLE 297

Query:   178 DLYIDRNDFIGSLPWC-LANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236
              L +  N+F GS     L NLT+L+ + V        + S  L++   + ++ LS+N+  
Sbjct:   298 YLSLSDNNFDGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSF-LLYQKKLRLVDLSSNNLS 356

Query:   237 IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLP 296
               I      N  +L++    N+    F +PT    N+   D S N + G  P ++   LP
Sbjct:   357 GNIPTWLLTNNPELEVLQLQNNSFTIFPIPTMVH-NLQIFDFSANNI-GKFPDKMDHALP 414

Query:   297 NLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXX 356
             NL  L+ + N F G  P+S G+M ++ +LDLS N  +G++P     GC ++ +       
Sbjct:   415 NLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNK 474

Query:   357 XXXXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNI 416
                                 D N F G+I   LSN + L+ L +S+N ++G+IP W+   
Sbjct:   475 FSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEF 534

Query:   417 SFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
              +LD +++ +N LEG IP     + +L  LDLS N  +G+LPS
Sbjct:   535 PYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPS 577

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 9.2e-40, Sum P(2) = 9.2e-40
 Identities = 129/471 (27%), Positives = 203/471 (43%)

Query:     4 LKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSI---NIEGMNMLESLDLSGNKF 60
             L+ LDLS N F                     N + G      +  +  +E LDLS N+F
Sbjct:   151 LEILDLSDNLFNSRIFPFLNSATSLKSLSLWGNNMGGPFPAKELRDLTNVELLDLSRNRF 210

Query:    61 NXXX-XXXXXXXXXXXXXNLMATGFKGTFDVQXXXXXXXXXXXXXXXNEIDNLVVPKD-Y 118
             N                 +L    F  + ++Q                 ++ L +  +  
Sbjct:   211 NGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKL 270

Query:   119 RGLRKLRFLDLSGLRIRDGSK------VLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCE 172
              G   L    L+GLR+ D S       V  ++ +  SL+ L L  NNF    +    L  
Sbjct:   271 AGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGL-LAN 329

Query:   173 LVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSP--LMHLTSIEVLLL 230
             L  L+ L +D      SL          +   V     + NL   P  L+H   +  + L
Sbjct:   330 LSKLKVLRLDSQS--NSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDL 387

Query:   231 SNN--HFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIP 288
             S+N  H   P  L    N +KL++    N+    F+LP +S  N++ L++S NK   H+ 
Sbjct:   388 SDNQIHGNFPSWL--LENNTKLEVLLLQNNSFTSFQLP-KSAHNLLFLNVSVNKFN-HLF 443

Query:   289 VE-IGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNL 347
             ++  G +LP+L  +++ +N F G++PSS  +M S+ +LDLS+N+  G++P     GC+NL
Sbjct:   444 LQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNL 503

Query:   348 EYXXXXXXXXXXXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNCSSLQGLYISDNDITG 407
                           F              D N F G+I +   +  SL  L IS+N +TG
Sbjct:   504 TILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTG 563

Query:   408 SIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
              IP+WIG    L A+ + +N LEG IP+    + YL++LDLS N ++G +P
Sbjct:   564 VIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIP 614

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 9.4e-38, P = 9.4e-38
 Identities = 137/486 (28%), Positives = 216/486 (44%)

Query:     1 LSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSI---NIEGMNMLESLDLSG 57
             L  L+ LDL+ N F                     N ++GS     +  +  LE LDLS 
Sbjct:   131 LRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLDLSR 190

Query:    58 NKFNXXX-XXXXXXXXXXXXXNLMATGFKGTFDVQXXXXXXXXXXXXXXXNEIDN----- 111
             N+FN                 +L    F G+ ++Q                E++N     
Sbjct:   191 NRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELD 250

Query:   112 -----LV--VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTV 164
                  LV  +P     L  LR LDLS  ++  G+ V  S+GS  SL+ L L  N+F  + 
Sbjct:   251 LSQNKLVGHLPSCLTSLTGLRVLDLSSNKLT-GT-VPSSLGSLQSLEYLSLFDNDFEGSF 308

Query:   165 TTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHV----PDNQLTG------NL 214
             +   G   L +L +L +        L  C +  +SL+VL      P  QL+       N+
Sbjct:   309 SF--G--SLANLSNLMV--------LKLC-SKSSSLQVLSESSWKPKFQLSVIALRSCNM 355

Query:   215 SSSP--LMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKN 272
                P  L+H   +  + LS+N+    +      N +KLK+    N+L   F++P +S  N
Sbjct:   356 EKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSFQIP-KSAHN 414

Query:   273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332
             ++ LD+S N      P  IG + P+L +L+ + N F  ++PSS G+MN + Y+DLS N  
Sbjct:   415 LLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSF 474

Query:   333 TGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNC 392
              G +P     GC+++              F              D N F G I + L + 
Sbjct:   475 HGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSL 534

Query:   393 SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN 452
              +L+ L +S+N++TG IP+WIG +  L A+++ DN L+G IP        L++LDLS N+
Sbjct:   535 INLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANS 594

Query:   453 IAGSLP 458
             ++G +P
Sbjct:   595 LSGVIP 600

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 9.6e-37, P = 9.6e-37
 Identities = 128/463 (27%), Positives = 202/463 (43%)

Query:     1 LSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSIN--IEGMNMLESLDLSGN 58
             L+ L+ L+LS+N                      +N L+G++   I   + L  L  S N
Sbjct:   185 LTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASEN 244

Query:    59 KFNXXXXXXXXXXXXXXXXNLMATGFKGTFDVQXXXXXXXXXXXXXXXNEIDNLVVPKDY 118
             +                  +L    F GT                   N   ++V P+  
Sbjct:   245 EIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGF-NAFSDIVRPETT 303

Query:   119 RGLRK-LRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
                R  L+ LDL   RI  G   L  + +  SLK L +  N F+  +    G   L  L+
Sbjct:   304 ANCRTGLQVLDLQENRI-SGRFPLW-LTNILSLKNLDVSGNLFSGEIPPDIG--NLKRLE 359

Query:   178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ- 236
             +L +  N   G +P  +    SL VL    N L G +    L ++ +++VL L  N F  
Sbjct:   360 ELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEF-LGYMKALKVLSLGRNSFSG 418

Query:   237 -IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 295
              +P S+       +L +    N+L+G F +   +  ++  LD+S N+  G +PV I   L
Sbjct:   419 YVPSSMVNLQQLERLNL--GENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISN-L 475

Query:   296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXX 355
              NL FL+++ N F+G IP+S G++  L  LDLS   ++GE+P  L+ G  N++       
Sbjct:   476 SNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELS-GLPNVQVIALQGN 534

Query:   356 XXXXXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGN 415
                                    N F G+IP++      L  L +SDN I+GSIP  IGN
Sbjct:   535 NFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGN 594

Query:   416 ISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
              S L+ + +  N L G IP++  +L  L++LDL +NN++G +P
Sbjct:   595 CSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIP 637

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
 Identities = 117/426 (27%), Positives = 192/426 (45%)

Query:    37 RLEGSINIEGMNM--LESLDLSGNKFNXXXXXXXXXXXXXXXXNLMATGFKGTFDVQXXX 94
             +L G I  E  N   L+ LDLS N                    L     +GT       
Sbjct:   348 QLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLS-SSIS 406

Query:    95 XXXXXXXXXXXXNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 154
                         N ++  V PK+   L KL  + L   R      V   IG+   L+ + 
Sbjct:   407 NLTNLQEFTLYHNNLEGKV-PKEIGFLGKLEIMYLYENRFSGEMPV--EIGNCTRLQEID 463

Query:   155 LKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNL 214
                N  +  + ++ G   L  L  L++  N+ +G++P  L N   + V+ + DNQL+G++
Sbjct:   464 WYGNRLSGEIPSSIG--RLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSI 521

Query:   215 SSSPLMHLTSIEVLLLSNNHFQ--IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKN 272
              SS    LT++E+ ++ NN  Q  +P SL    N +++    ++N  +G    P     +
Sbjct:   522 PSS-FGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINF--SSNKFNGSIS-PLCGSSS 577

Query:   273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332
              ++ D++ N  +G IP+E+GK   NL  L +  N F G IP +FG ++ L  LD+S N L
Sbjct:   578 YLSFDVTENGFEGDIPLELGKST-NLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSL 636

Query:   333 TGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNC 392
             +G IP  L + C  L +             +               N F+G +P  + + 
Sbjct:   637 SGIIPVELGL-CKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSL 695

Query:   393 SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN 452
             +++  L++  N + GSIP  IGN+  L+A+ + +N L GP+PS   +L  L  L LS+N 
Sbjct:   696 TNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNA 755

Query:   453 IAGSLP 458
             + G +P
Sbjct:   756 LTGEIP 761

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
 Identities = 115/354 (32%), Positives = 170/354 (48%)

Query:   110 DNLV--VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 167
             +NLV  +P +     +L  +DLS   +  G+ +  S G+ P+L+ L L  N  + T+   
Sbjct:   299 NNLVGKIPTELGTCPELFLVDLSE-NLLTGN-IPRSFGNLPNLQELQLSVNQLSGTIPEE 356

Query:   168 QGLC-ELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIE 226
                C +L HL+   ID N   G +P  +  LTSL +     NQLTG +  S L     ++
Sbjct:   357 LANCTKLTHLE---IDNNQISGEIPPLIGKLTSLTMFFAWQNQLTGIIPES-LSQCQELQ 412

Query:   227 VLLLSNNHFQ--IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQ 284
              + LS N+    IP  +    N +KL +   +N LSG       +  N+  L ++ N+L 
Sbjct:   413 AIDLSYNNLSGSIPNGIFEIRNLTKLLLL--SNYLSGFIPPDIGNCTNLYRLRLNGNRLA 470

Query:   285 GHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 344
             G+IP EIG  L NL F+ I+ N   G+IP       SL ++DL +N LTG +P  L    
Sbjct:   471 GNIPAEIGN-LKNLNFIDISENRLIGNIPPEISGCTSLEFVDLHSNGLTGGLPGTLPK-- 527

Query:   345 FNLEYXXXXXXXXXXXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNCSSLQGLYISDND 404
              +L++             +               N F G+IP  +S+C SLQ L + DN 
Sbjct:   528 -SLQFIDLSDNSLTGSLPTGIGSLTELTKLNLAKNRFSGEIPREISSCRSLQLLNLGDNG 586

Query:   405 ITGSIPTWIGNI-SFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSL 457
              TG IP  +G I S   ++ +  NH  G IPS F  L  L  LD+S N +AG+L
Sbjct:   587 FTGEIPNELGRIPSLAISLNLSCNHFTGEIPSRFSSLTNLGTLDVSHNKLAGNL 640

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
 Identities = 116/383 (30%), Positives = 172/383 (44%)

Query:    78 NLMATGFKGTFDVQXXXXXXXXXXXXXXXNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG 137
             NL  TG +GTF                  N +    +P  +  L KL + DLS   +   
Sbjct:    83 NLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSG-TIPPQFGNLSKLIYFDLSTNHLT-- 139

Query:   138 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANL 197
              ++  S+G+  +L  LYL  N     + +  G  E   + DL + +N   GS+P  L NL
Sbjct:   140 GEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNME--SMTDLALSQNKLTGSIPSSLGNL 197

Query:   198 TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF--QIPISLEPFFNYSKLKIFHA 255
              +L VL++ +N LTG +    L ++ S+  L LS N     IP +L    N   L ++  
Sbjct:   198 KNLMVLYLYENYLTGVIPPE-LGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYE- 255

Query:   256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSS 315
              N L+G       + +++  L +S NKL G IP  +G  L NL  LS+  N   G IP  
Sbjct:   256 -NYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGN-LKNLTLLSLFQNYLTGGIPPK 313

Query:   316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSXXXXXXXXXXXX 375
              G++ S+I L+LSNN+LTG IP  L     NL                            
Sbjct:   314 LGNIESMIDLELSNNKLTGSIPSSLG-NLKNLTILYLYENYLTGVIPPELGNMESMIDLQ 372

Query:   376 XDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS 435
              + N   G IP S  N  +L  LY+  N +TG IP  +GN+  +  + +  N L G +P 
Sbjct:   373 LNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPD 432

Query:   436 EFCQLDYLEILDLSKNNIAGSLP 458
              F     LE L L  N+++G++P
Sbjct:   433 SFGNFTKLESLYLRVNHLSGAIP 455

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2041150 BRL2 "BRI1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 104/341 (30%), Positives = 151/341 (44%)

Query:   127 LD-LSGLRIRDGSKVLHSIGSF--P-SLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYID 182
             LD LS L++ +   VL+S      P +L  L L S+    T+       +  +L  + + 
Sbjct:   102 LDSLSVLKLSENFFVLNSTSLLLLPLTLTHLELSSSGLIGTLPENF-FSKYSNLISITLS 160

Query:   183 RNDFIGSLPWCL-ANLTSLRVLHVPDNQLTGNLS--SSPLMHLTSIEVLLLSNNHFQIPI 239
              N+F G LP  L  +   L+ L +  N +TG +S  + PL    S+  L  S N     I
Sbjct:   161 YNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIPLSSCVSMTYLDFSGNSISGYI 220

Query:   240 SLEPFFNYSKLKIFHAN-NSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 298
             S +   N + LK  + + N+  G         K + +LD+S+N+L G IP EIG    +L
Sbjct:   221 S-DSLINCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSL 279

Query:   299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXX 358
               L +++N F G IP S    + L  LDLSNN ++G  P  +     +L+          
Sbjct:   280 QNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLIS 339

Query:   359 XXXFSXXXXXXXXXXXXXDGNHFIGDIPESLS-NCSSLQGLYISDNDITGSIPTWIGNIS 417
                 +               N F G IP  L    +SL+ L + DN +TG IP  I   S
Sbjct:   340 GDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCS 399

Query:   418 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
              L  I +  N+L G IP E   L  LE      NNIAG +P
Sbjct:   400 ELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIP 440

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010233 "phloem transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 9.6e-35, P = 9.6e-35
 Identities = 120/426 (28%), Positives = 184/426 (43%)

Query:    37 RLEGSINIE--GMNMLESLDLSGNKFNXXXXXXXXXXXXXXXXNLMATGFKGTFDVQXXX 94
             +L G I +E      L+ LDLS N                    L     +GT       
Sbjct:   347 QLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLS-PSIS 405

Query:    95 XXXXXXXXXXXXNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 154
                         N ++  + PK+   LRKL  L L   R     ++   IG+  SLK + 
Sbjct:   406 NLTNLQWLVLYHNNLEGKL-PKEISALRKLEVLFLYENRF--SGEIPQEIGNCTSLKMID 462

Query:   155 LKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNL 214
             +  N+F   +  + G   L  L  L++ +N+ +G LP  L N   L +L + DNQL+G++
Sbjct:   463 MFGNHFEGEIPPSIG--RLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSI 520

Query:   215 SSSPLMHLTSIEVLLLSNNHFQ--IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKN 272
              SS    L  +E L+L NN  Q  +P SL    N +++ + H  N L+G    P     +
Sbjct:   521 PSS-FGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSH--NRLNGTIH-PLCGSSS 576

Query:   273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332
              ++ D++ N  +  IP+E+G    NL  L +  N   G IP + G +  L  LD+S+N L
Sbjct:   577 YLSFDVTNNGFEDEIPLELGNS-QNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNAL 635

Query:   333 TGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNC 392
             TG IP  L + C  L +                             N F+  +P  L NC
Sbjct:   636 TGTIPLQLVL-CKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNC 694

Query:   393 SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN 452
             + L  L +  N + GSIP  IGN+  L+ + +  N   G +P    +L  L  L LS+N+
Sbjct:   695 TKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNS 754

Query:   453 IAGSLP 458
             + G +P
Sbjct:   755 LTGEIP 760

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 1.0e-34, P = 1.0e-34
 Identities = 125/466 (26%), Positives = 199/466 (42%)

Query:     1 LSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSINIEGM-NM--LESLDLSG 57
             L NL+ LDL  N +                     N  +G   ++ + N+  LE LDL  
Sbjct:    78 LRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNLFKGGFPVQELINLTSLEVLDLKF 137

Query:    58 NKFNXXX-XXXXXXXXXXXXXNLMATGFKGTFDVQXXXXXXXXXXXXXXXNEIDNLVVPK 116
             NKF+                 +L    F G+   Q               N  +   +P 
Sbjct:   138 NKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRLSRNRFEG-EIPL 196

Query:   117 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLC-ELVH 175
              +    KLR LDLS   +    K+ + I  F S++ L L  N+F    +   GL  EL  
Sbjct:   197 CFSRFSKLRVLDLSSNHL--SGKIPYFISDFKSMEYLSLLDNDFEGLFSL--GLITELTE 252

Query:   176 LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG-NLSSSP--LMHLTSIEVLLLSN 232
             L+   +      G L     N++      +    L+  NL   P  L +   + V+ LSN
Sbjct:   253 LKVFKLSSRS--GMLQIVETNVSGGLQSQLSSIMLSHCNLGKIPGFLWYQQELRVIDLSN 310

Query:   233 NHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG 292
             N            N ++L+     N+      LP R+ + +  LD+S N     +P ++G
Sbjct:   311 NILSGVFPTWLLENNTELQALLLQNNSFKTLTLP-RTMRRLQILDLSVNNFNNQLPKDVG 369

Query:   293 KVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXX 352
              +L +L  L+++ N F G++PSS   M ++ ++DLS N  +G++P +L  GC++L +   
Sbjct:   370 LILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKL 429

Query:   353 XXXXXXXXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTW 412
                                     D N F G IP +L N   L  + +S+N +TG+IP W
Sbjct:   430 SHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRW 489

Query:   413 IGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
             +GN  FL+ + + +N L+G IP     + YL +LDLS N ++GSLP
Sbjct:   490 LGNF-FLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLP 534

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	459
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  157 bits (399), Expect = 2e-41
 Identities = 145/460 (31%), Positives = 215/460 (46%), Gaps = 36/460 (7%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE--GMNMLESLDLSGNK 59
           S+LK LDL  N     + +SL  L+SL+ L+LA N+L G I  E   M  L+ + L  N 
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
            +  I   +  L+SL  L+L+     G      L +L NL+ L +  N++    +P    
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSG-PIPPSIF 281

Query: 120 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDL 179
            L+KL  LDLS   +    ++   +    +L+ L+L SNNF  T      L  L  LQ L
Sbjct: 282 SLQKLISLDLSDNSL--SGEIPELVIQLQNLEILHLFSNNF--TGKIPVALTSLPRLQVL 337

Query: 180 YIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI 239
            +  N F G +P  L    +L VL +  N LTG                       +IP 
Sbjct: 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG-----------------------EIPE 374

Query: 240 SLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 299
            L    N  KL +F  +NSL G       + +++  + +  N   G +P E  K LP + 
Sbjct: 375 GLCSSGNLFKLILF--SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVY 431

Query: 300 FLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG 359
           FL I+ N   G I S   DM SL  L L+ N+  G +P+  + G   LE L LS N   G
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSG 489

Query: 360 QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFL 419
            +  K  +L++L +L L  N   G+IP+ LS+C  L  L +S N ++G IP     +  L
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 420 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
             + +  N L G IP     ++ L  +++S N++ GSLPS
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  156 bits (396), Expect = 4e-41
 Identities = 145/461 (31%), Positives = 226/461 (49%), Gaps = 39/461 (8%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFN 61
           S +  +DLS  + +  + S++  L  ++ ++L+ N+L G I               + F 
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPI-------------PDDIFT 115

Query: 62  SSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGL 121
           +S        SSLR LNL    F G+       S+ NLE LD+S+N +    +P D    
Sbjct: 116 TS--------SSLRYLNLSNNNFTGSI---PRGSIPNLETLDLSNNMLSG-EIPNDIGSF 163

Query: 122 RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181
             L+ LDL G  +    K+ +S+ +  SL+ L L SN     +    G  ++  L+ +Y+
Sbjct: 164 SSLKVLDLGGNVLV--GKIPNSLTNLTSLEFLTLASNQLVGQIPRELG--QMKSLKWIYL 219

Query: 182 DRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF--QIPI 239
             N+  G +P+ +  LTSL  L +  N LTG + SS L +L +++ L L  N     IP 
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPP 278

Query: 240 SLEPFFNYSKL-KIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 298
           S+   F+  KL  +  ++NSLSG         +N+  L +  N   G IPV +   LP L
Sbjct: 279 SI---FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRL 334

Query: 299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 358
             L +  N F+G IP + G  N+L  LDLS N LTGEIPE L     NL  L+L +NSL+
Sbjct: 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLE 393

Query: 359 GQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISF 418
           G++         L+R+ L  N F G++P   +    +  L IS+N++ G I +   ++  
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 419 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           L  + +  N   G +P  F     LE LDLS+N  +G++P 
Sbjct: 454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPR 493

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  137 bits (347), Expect = 9e-35
 Identities = 92/264 (34%), Positives = 143/264 (54%), Gaps = 6/264 (2%)

Query: 196 NLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH- 254
           N + +  + +    ++G +SS+ +  L  I+ + LSNN    PI  + F   S L+  + 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 255 ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS 314
           +NN+ +G   +P  S  N+  LD+S N L G IP +IG    +L  L +  N   G IP+
Sbjct: 126 SNNNFTGS--IPRGSIPNLETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPN 182

Query: 315 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL 374
           S  ++ SL +L L++NQL G+IP  L     +L+++ L  N+L G++  +   LT L  L
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Query: 375 NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIP 434
           +L  N+  G IP SL N  +LQ L++  N ++G IP  I ++  L ++ + DN L G IP
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Query: 435 SEFCQLDYLEILDLSKNNIAGSLP 458
               QL  LEIL L  NN  G +P
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIP 325

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 102/364 (28%), Positives = 162/364 (44%), Gaps = 57/364 (15%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGN 58
           L++L  LDL +N+    + SSL  L +L+ L L  N+L G I  +I  +  L SLDLS N
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
             +  I   +  L +L  L+L +  F G   V  L SL  L+ L +  N+     +PK+ 
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSG-EIPKNL 352

Query: 119 RGLRKLRFLDLS----GLRIRDG------------------SKVLHSIGSFPSLKTLYLK 156
                L  LDLS       I +G                   ++  S+G+  SL+ + L+
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412

Query: 157 SNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSS 216
            N+F+  + +      LV+  D  I  N+  G +     ++ SL++L +  N+  G L  
Sbjct: 413 DNSFSGELPSEFTKLPLVYFLD--ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 217 SPLMHLTSIEVLLLSNNHFQ--IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNII 274
           S       +E L LS N F   +P  L       +LK+  + N LSG       S K ++
Sbjct: 471 S--FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL--SENKLSGEIPDELSSCKKLV 526

Query: 275 ALDISYNKLQGHIPVEI-----------------GKVLPNLGF------LSITFNAFNGS 311
           +LD+S+N+L G IP                    G++  NLG       ++I+ N  +GS
Sbjct: 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586

Query: 312 IPSS 315
           +PS+
Sbjct: 587 LPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 3e-10
 Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 26/123 (21%)

Query: 267 TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLD 326
           T+ +  I  L +    L+G IP +I K L +L  ++++ N+  G+IP S G + SL  LD
Sbjct: 414 TKGKWFIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 327 LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIP 386
           LS N   G IPE L                  GQ       LT L+ LNL+GN   G +P
Sbjct: 473 LSYNSFNGSIPESL------------------GQ-------LTSLRILNLNGNSLSGRVP 507

Query: 387 ESL 389
            +L
Sbjct: 508 AAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query: 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI 409
           L L N  L+G + +  + L  L+ +NL GN   G+IP SL + +SL+ L +S N   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 410 PTWIGNISFLDAIIMPDNHLEGPIPS 435
           P  +G ++ L  + +  N L G +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 31/86 (36%), Positives = 48/86 (55%)

Query: 374 LNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPI 433
           L LD     G IP  +S    LQ + +S N I G+IP  +G+I+ L+ + +  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 434 PSEFCQLDYLEILDLSKNNIAGSLPS 459
           P    QL  L IL+L+ N+++G +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 325 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD 384
           L L N  L G IP  ++    +L+ + LS NS++G +     ++T L+ L+L  N F G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 385 IPESLSNCSSLQGLYISDNDITGSIPTWIG 414
           IPESL   +SL+ L ++ N ++G +P  +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 7   LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGNKFNSSI 64
           L L +      + + ++ L  L++++L+ N + G+I  ++  +  LE LDLS N FN SI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 65  LSSLTALSSLRKLNL 79
             SL  L+SLR LNL
Sbjct: 483 PESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 24/193 (12%)

Query: 63  SILSSLTALSSLRKLNLM--ATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
           S+L  LT    L++L+L   A G  G   ++ L   S+L+EL +++N + +  +    +G
Sbjct: 72  SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131

Query: 121 LR----KLRFLDLSGLRIRDGS-----KVLHSIGSFPSLKTLYLKSNNF--AKTVTTTQG 169
           L+     L  L L   R+   S     K L +      LK L L +N    A      +G
Sbjct: 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRD---LKELNLANNGIGDAGIRALAEG 188

Query: 170 LCELVHLQDLYIDRNDF----IGSLPWCLANLTSLRVLHVPDNQLTG----NLSSSPLMH 221
           L    +L+ L ++ N        +L   LA+L SL VL++ DN LT      L+S+ L  
Sbjct: 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSP 248

Query: 222 LTSIEVLLLSNNH 234
             S+  L LS N 
Sbjct: 249 NISLLTLSLSCND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI 42
           +++L+ LDLS+NSFN S+  SL  L+SL+ L+L  N L G +
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 28/112 (25%)

Query: 106 DNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVT 165
           DN+     +P D   LR L+ ++LSG  IR    +  S+GS  SL+ L L  N+F     
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGN--IPPSLGSITSLEVLDLSYNSFN---- 479

Query: 166 TTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSS 217
                                 GS+P  L  LTSLR+L++  N L+G + ++
Sbjct: 480 ----------------------GSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 297 NLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS 356
           NL  L ++ N        +F  + +L  LDLS N LT  I      G  +L  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 357 L 357
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 366 NNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISF-LDAIIM 424
           NN +++  ++L G +  G I  ++     +Q + +S+N ++G IP  I   S  L  + +
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 425 PDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
            +N+  G IP        LE LDLS N ++G +P
Sbjct: 126 SNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIP 157

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGN 58
           L +L+ ++LS NS   ++  SL  ++SL+ L L+YN   GSI  ++  +  L  L+L+GN
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 59  KFNSSILSSLTAL 71
             +  + ++L   
Sbjct: 501 SLSGRVPAALGGR 513

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 36/174 (20%)

Query: 1   LSNLKFLDLSHNSF---NNSVLSSLAGLSSLKNLSLAYNRLEGS---INIEGMNM----L 50
              L+ LDLS N+       VL SL   SSL+ L L  N L      +  +G+      L
Sbjct: 80  GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL 139

Query: 51  ESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEID 110
           E L L  N+      +S  AL+                    L +  +L+EL++++N I 
Sbjct: 140 EKLVLGRNRLEG---ASCEALAK------------------ALRANRDLKELNLANNGIG 178

Query: 111 NLVVPKDYRGLR---KLRFLDLSGLRIRD--GSKVLHSIGSFPSLKTLYLKSNN 159
           +  +     GL+    L  LDL+   + D   S +  ++ S  SL+ L L  NN
Sbjct: 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 390 SNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDY-LEILDL 448
           +N S +  + +S  +I+G I + I  + ++  I + +N L GPIP +       L  L+L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 449 SKNNIAGSLPS 459
           S NN  GS+P 
Sbjct: 126 SNNNFTGSIPR 136

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 24/185 (12%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAG-----LSSLKNLSLAYNRLEGSINIEGMNM------L 50
           S+L+ L L++N   +  L  LA        +L+ L L  NRLEG+              L
Sbjct: 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167

Query: 51  ESLDLSGNKFNS----SILSSLTALSSLRKLNLMATGF--KGTFDVQE-LDSLSNLEELD 103
           + L+L+ N        ++   L A  +L  L+L   G   +G   + E L SL +LE L+
Sbjct: 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227

Query: 104 MSDNEIDNL----VVPKDYRGLRKLRFLDLSGLRI-RDGSK-VLHSIGSFPSLKTLYLKS 157
           + DN + +     +          L  L LS   I  DG+K +   +    SL  L L+ 
Sbjct: 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287

Query: 158 NNFAK 162
           N F +
Sbjct: 288 NKFGE 292

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 35/116 (30%)

Query: 207 DNQ-LTGNLSS--SPLMHLTSIEVLLLSNN--HFQIPISLEPFFNYSKLKIFHANNSLSG 261
           DNQ L G + +  S L HL SI    LS N     IP SL                S++ 
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSIN---LSGNSIRGNIPPSL---------------GSITS 467

Query: 262 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFG 317
                      +  LD+SYN   G IP  +G+ L +L  L++  N+ +G +P++ G
Sbjct: 468 -----------LEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDI 405
           NL+ L LSNN L          L  LK L+L GN+     PE+ S   SL+ L +S N++
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	459
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.33
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.32
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.31
KOG4341	483	consensus F-box protein containing LRR [General fu	99.3
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG4341	483	consensus F-box protein containing LRR [General fu	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.06
PLN03150	623	hypothetical protein; Provisional	99.05
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.98
PLN03150	623	hypothetical protein; Provisional	98.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.88
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.6
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.53
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.52
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.28
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
PRK15386	426	type III secretion protein GogB; Provisional	97.98
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.98
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.94
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.87
PRK15386	426	type III secretion protein GogB; Provisional	97.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.85
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.73
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.63
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.41
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.19
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.77
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.58
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.09
KOG4308	478	consensus LRR-containing protein [Function unknown	94.26
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.11
KOG4308	478	consensus LRR-containing protein [Function unknown	92.84
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.48
smart00370	26	LRR Leucine-rich repeats, outliers.	91.3
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.3
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.87
smart00370	26	LRR Leucine-rich repeats, outliers.	89.24
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.24
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.38
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.46

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.8e-47  Score=388.35  Aligned_cols=447  Identities=30%  Similarity=0.464  Sum_probs=301.3

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+.+  +..+.++++|++|++++|.+....+..+.++++|++|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            344445555554444445555555555555555554432  233455555555555555555445555555555555555


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN  159 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (459)
                      ++|.+.+..+ ..+..+++|++|++++|.+.... +..+..+++|++|++++|.+...  .+..+..+++|+.|++++|.
T Consensus       220 ~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        220 GYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             cCCccCCcCC-hhHhcCCCCCEEECcCceecccc-ChhHhCCCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCe
Confidence            5555443222 24555555555555555554322 44555555666666655555432  44455555666666666655


Q ss_pred             ccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec
Q 039778          160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI  239 (459)
Q Consensus       160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  239 (459)
                      +....+.  .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+ +..+..+++|+.|++++|.+.+..
T Consensus       296 l~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~Ls~n~l~~~~  372 (968)
T PLN00113        296 LSGEIPE--LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLTGEI  372 (968)
T ss_pred             eccCCCh--hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC-ChHHhCCCCCcEEECCCCeeEeeC
Confidence            5433222  3445566666666666665555656666666666666666655433 344556666666666666654322


Q ss_pred             ccccccccCCceeeec-CccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccC
Q 039778          240 SLEPFFNYSKLKIFHA-NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGD  318 (459)
Q Consensus       240 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~  318 (459)
                      . ..+....+++.+.. .+...+.....+..+++|+.|++++|.+.+..|..+.. ++.|+.+++++|.+.+..+..+..
T Consensus       373 p-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~  450 (968)
T PLN00113        373 P-EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWD  450 (968)
T ss_pred             C-hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc-CCCCCEEECcCCcccCccChhhcc
Confidence            1 22233344444432 22333333444566788888888888888777766554 888889999988888777777778


Q ss_pred             CCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEE
Q 039778          319 MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGL  398 (459)
Q Consensus       319 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  398 (459)
                      +++|+.|++++|.+.+.+|...  ..++|+.|++++|++.+..+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus       451 l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  528 (968)
T PLN00113        451 MPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL  528 (968)
T ss_pred             CCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence            8899999999998876666543  36889999999999998888889999999999999999998899999999999999


Q ss_pred             EcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCCC
Q 039778          399 YISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       399 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~  459 (459)
                      ++++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.+++++|++++.+|+
T Consensus       529 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            9999999999999999999999999999999999999999999999999999999999995

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.2e-46  Score=379.99  Aligned_cols=449  Identities=29%  Similarity=0.478  Sum_probs=304.4

Q ss_pred             CCCCcEEEccCCcccccchhhh-cCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            1 LSNLKFLDLSHNSFNNSVLSSL-AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      +++|++|++++|.+++..+..+ ..+++|++|++++|.+.+......+++|++|++++|.+....+..++++++|++|++
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  171 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL  171 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence            4677888888887775555443 477888888888777766555566778888888888777677777888888888888


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN  159 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (459)
                      ++|.+.+..+ ..+.++++|++|++++|.+.... |..+..+++|++|++++|.+...  ++..++++++|++|++++|.
T Consensus       172 ~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        172 GGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             ccCcccccCC-hhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCc--CChhHhcCCCCCEEECcCce
Confidence            8887664443 36777888888888888766543 56777788888888887776654  66677777888888887777


Q ss_pred             ccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec
Q 039778          160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI  239 (459)
Q Consensus       160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  239 (459)
                      +.+..+.  .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+ +..+..+++|+.|++++|.+....
T Consensus       248 l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~  324 (968)
T PLN00113        248 LTGPIPS--SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI-PELVIQLQNLEILHLFSNNFTGKI  324 (968)
T ss_pred             eccccCh--hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC-ChhHcCCCCCcEEECCCCccCCcC
Confidence            6543332  4666777777777777776666666767777777777777665443 345566677777777766654322


Q ss_pred             ccccccccCCceeeecC-ccccCCcccCcCCCCCccEEEeccCccccccchhhhh-----------------------cC
Q 039778          240 SLEPFFNYSKLKIFHAN-NSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK-----------------------VL  295 (459)
Q Consensus       240 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----------------------~~  295 (459)
                       ...+..+++|+.+... +...+.....+..+++|+.|++++|.+.+.+|..+..                       .+
T Consensus       325 -~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~  403 (968)
T PLN00113        325 -PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC  403 (968)
T ss_pred             -ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence             2234444555555432 2222233333444555566666555555444443332                       14


Q ss_pred             CCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEE
Q 039778          296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLN  375 (459)
Q Consensus       296 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  375 (459)
                      ++|+.|++++|.+.+..+..+..++.|+.|++++|.+.+.++.... .+++|+.|++++|.+.+..+..+ ..++|+.|+
T Consensus       404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~  481 (968)
T PLN00113        404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD  481 (968)
T ss_pred             CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence            4555555555555544444555555555555555555543333322 35666666666666655444443 346778888


Q ss_pred             ccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccc
Q 039778          376 LDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG  455 (459)
Q Consensus       376 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  455 (459)
                      +++|.+.+..|..+..+++|+.|++++|.+.+.+|+.+..+++|+.|+|++|.+++.+|..+..+++|+.|++++|++++
T Consensus       482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG  561 (968)
T ss_pred             CcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence            88888877778888888899999999999988888888899999999999999998899999999999999999999999


Q ss_pred             cCCC
Q 039778          456 SLPS  459 (459)
Q Consensus       456 ~~p~  459 (459)
                      .+|.
T Consensus       562 ~~p~  565 (968)
T PLN00113        562 EIPK  565 (968)
T ss_pred             cCCh
Confidence            8884

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-37  Score=273.20  Aligned_cols=390  Identities=25%  Similarity=0.283  Sum_probs=287.2

Q ss_pred             cEEEccCCcccccchhhhcCC--ccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEcc
Q 039778            5 KFLDLSHNSFNNSVLSSLAGL--SSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLM   80 (459)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   80 (459)
                      +.||.++..+....+..+.++  ..-++|++++|++.+  ...|.++++|+++++.+|.++ ..|..-....+|+.|++.
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence            556777777776666666553  455668888887665  345677888888888888775 455444455668888888


Q ss_pred             CCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcc
Q 039778           81 ATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF  160 (459)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (459)
                      .|.+. .+...++..++.|++||++.|.+..+. ...+..-.++++|++.+|++.+.  ....|..+.+|-.|.+++|++
T Consensus       134 ~N~I~-sv~se~L~~l~alrslDLSrN~is~i~-~~sfp~~~ni~~L~La~N~It~l--~~~~F~~lnsL~tlkLsrNri  209 (873)
T KOG4194|consen  134 HNLIS-SVTSEELSALPALRSLDLSRNLISEIP-KPSFPAKVNIKKLNLASNRITTL--ETGHFDSLNSLLTLKLSRNRI  209 (873)
T ss_pred             ccccc-cccHHHHHhHhhhhhhhhhhchhhccc-CCCCCCCCCceEEeecccccccc--ccccccccchheeeecccCcc
Confidence            77776 444456777788888888888877765 34566667788888888887765  445667777888888888887


Q ss_pred             cccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecc
Q 039778          161 AKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS  240 (459)
Q Consensus       161 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  240 (459)
                      +..+..  .+..+++|+.|++..|++...-.-.|.++++|+.|.+..|.+. ......+..+.+++.|+++.|++.... 
T Consensus       210 ttLp~r--~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn-  285 (873)
T KOG4194|consen  210 TTLPQR--SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVN-  285 (873)
T ss_pred             cccCHH--HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhh-
Confidence            766544  5667888888888888766544556777788888888877766 555566777788888888877665211 


Q ss_pred             cccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCC
Q 039778          241 LEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMN  320 (459)
Q Consensus       241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~  320 (459)
                                             ..+...++.|+.|+++.|.+. .+....++.+++|++|+|++|.++.....+|..+.
T Consensus       286 -----------------------~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  286 -----------------------EGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS  341 (873)
T ss_pred             -----------------------cccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence                                   123345567778888888776 34333344488899999999999888888888888


Q ss_pred             CCcEEEccCCccccccchhHHhcccccceeecccccccc---ccccccccccCCceEEccCCcccCCCcccccccCCCcE
Q 039778          321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQG  397 (459)
Q Consensus       321 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  397 (459)
                      .|++|.++.|.+. .+.+..|..+++|+.|+++.|.+..   ....+|..+++|+.|++.||++..+.-.+|..++.|+.
T Consensus       342 ~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  342 QLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH  420 (873)
T ss_pred             HhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence            9999999999887 8888888888999999999997763   23456777899999999999988777788888999999


Q ss_pred             EEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778          398 LYISDNDITGSIPTWIGNISFLDAIIMPDNHL  429 (459)
Q Consensus       398 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  429 (459)
                      |++.+|.|...-+.+|..+ .|++|.+..-.+
T Consensus       421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             ecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            9999998887778888877 888876665443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-36  Score=266.47  Aligned_cols=392  Identities=23%  Similarity=0.237  Sum_probs=323.8

Q ss_pred             cccEEEeccccccCC--ccccc--CccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778           27 SLKNLSLAYNRLEGS--INIEG--MNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL  102 (459)
Q Consensus        27 ~L~~L~l~~~~~~~~--~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  102 (459)
                      +-+.|+.++..+...  ..+..  .+.-++|++++|++.++....|.++++|+.+++.+|... .+|. ......+|+.|
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L  130 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKL  130 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEE
Confidence            345666666655432  12222  234567999999999999999999999999999999876 5553 34445679999


Q ss_pred             ECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcc
Q 039778          103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYID  182 (459)
Q Consensus       103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  182 (459)
                      ++.+|.|..+. .+.+..++.|+.++++.|.+...  -...+..-.++++|++++|.+......  .+..+.+|..|.++
T Consensus       131 ~L~~N~I~sv~-se~L~~l~alrslDLSrN~is~i--~~~sfp~~~ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  131 DLRHNLISSVT-SEELSALPALRSLDLSRNLISEI--PKPSFPAKVNIKKLNLASNRITTLETG--HFDSLNSLLTLKLS  205 (873)
T ss_pred             eeecccccccc-HHHHHhHhhhhhhhhhhchhhcc--cCCCCCCCCCceEEeeccccccccccc--cccccchheeeecc
Confidence            99999998886 67899999999999999988774  334566778999999999999876554  46778899999999


Q ss_pred             ccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCC
Q 039778          183 RNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGP  262 (459)
Q Consensus       183 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  262 (459)
                      +|+++...+..|..+++|+.|++..|++. .+....+.++++|+.+.+..|.+..-.                       
T Consensus       206 rNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~-----------------------  261 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLD-----------------------  261 (873)
T ss_pred             cCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCccccc-----------------------
Confidence            99999888889999999999999999876 444677899999999999888765211                       


Q ss_pred             cccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHh
Q 039778          263 FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM  342 (459)
Q Consensus       263 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  342 (459)
                       ...+..+.++++|++..|.+...-..|++. +..|+.|++++|.|.......+..+++|+.|+++.|+++ .+++..+.
T Consensus       262 -DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~  338 (873)
T KOG4194|consen  262 -DGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFR  338 (873)
T ss_pred             -Ccceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHH
Confidence             223456788999999999998444445554 999999999999999998999999999999999999999 88888888


Q ss_pred             cccccceeeccccccccccccccccccCCceEEccCCccc---CCCcccccccCCCcEEEcccccccCCCcccccCcccc
Q 039778          343 GCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFI---GDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFL  419 (459)
Q Consensus       343 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  419 (459)
                      .+..|+.|+++.|.+...-..+|..+.+|++|+|+.|.+.   +..+..|..+++|+.|.+.||++....-.+|..+++|
T Consensus       339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L  418 (873)
T KOG4194|consen  339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL  418 (873)
T ss_pred             HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence            8999999999999999777788999999999999999964   3355678889999999999999995555789999999


Q ss_pred             cEEEcCCCcccCCCchhhcCCCcccEEeccCCcc
Q 039778          420 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI  453 (459)
Q Consensus       420 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  453 (459)
                      +.|+|.+|.+-..-|..|..+ .|+.|.+..-.|
T Consensus       419 E~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  419 EHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             ceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            999999999987888888887 788887664433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=4.3e-35  Score=247.08  Aligned_cols=415  Identities=26%  Similarity=0.320  Sum_probs=296.2

Q ss_pred             chhhhcCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCC
Q 039778           18 VLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSL   96 (459)
Q Consensus        18 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   96 (459)
                      .++.+.....++.++.+.+.+.. +..++.+..|+.++-.+|+++ ..+..+.+|.+|..+.+.+++.. ..+...+. +
T Consensus       106 lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m  182 (565)
T KOG0472|consen  106 LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-M  182 (565)
T ss_pred             ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-H
Confidence            33334444445555555554443 334555566666666666664 56666677777777777777665 44443444 8


Q ss_pred             CCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccc
Q 039778           97 SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL  176 (459)
Q Consensus        97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  176 (459)
                      +.|+++|...+.+..+  |..++.+.+|..|+++.|.+..   +| .|..|.-|+++.+..|++.-....  ...+++++
T Consensus       183 ~~L~~ld~~~N~L~tl--P~~lg~l~~L~~LyL~~Nki~~---lP-ef~gcs~L~Elh~g~N~i~~lpae--~~~~L~~l  254 (565)
T KOG0472|consen  183 KRLKHLDCNSNLLETL--PPELGGLESLELLYLRRNKIRF---LP-EFPGCSLLKELHVGENQIEMLPAE--HLKHLNSL  254 (565)
T ss_pred             HHHHhcccchhhhhcC--ChhhcchhhhHHHHhhhccccc---CC-CCCccHHHHHHHhcccHHHhhHHH--Hhcccccc
Confidence            8888888888877777  7788888888888888888875   44 778888888888888887544333  45688999


Q ss_pred             cEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeee-------ecccccccccCC
Q 039778          177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQI-------PISLEPFFNYSK  249 (459)
Q Consensus       177 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~~  249 (459)
                      .+|++.+|++. ..|..+..+++|.+||++++.++ .. +..++++ +|+.|-+.+|++..       ....+.+..+.+
T Consensus       255 ~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs  330 (565)
T KOG0472|consen  255 LVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SL-PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS  330 (565)
T ss_pred             eeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cC-Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence            99999999986 46777788899999999999887 44 4567888 99999999997741       111111111111


Q ss_pred             -ceeeecCcc-----ccC---Cc-ccCcCCCCCccEEEeccCccccccchhhhhcC--CCccEEEeecCcCCCCCCCccc
Q 039778          250 -LKIFHANNS-----LSG---PF-RLPTRSRKNIIALDISYNKLQGHIPVEIGKVL--PNLGFLSITFNAFNGSIPSSFG  317 (459)
Q Consensus       250 -l~~~~~~~~-----~~~---~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~  317 (459)
                       .+..+....     ...   .. ........+.+.|++++-.++ .+|...+...  .-....+++.|.+. +.+..+.
T Consensus       331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~  408 (565)
T KOG0472|consen  331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV  408 (565)
T ss_pred             hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH
Confidence             000000000     000   00 011223457788999988888 8888877633  23778899999887 5555555


Q ss_pred             CCCCCcE-EEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCc
Q 039778          318 DMNSLIY-LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ  396 (459)
Q Consensus       318 ~~~~L~~-L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  396 (459)
                      .++.+++ +.++.|.+. .++..+. .+++|..|++++|.+. .+|..++.+..|+.++++.|.+. ..|.++.....++
T Consensus       409 ~lkelvT~l~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lE  484 (565)
T KOG0472|consen  409 ELKELVTDLVLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLE  484 (565)
T ss_pred             HHHHHHHHHHhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHH
Confidence            5555544 455566664 7776655 5999999999999877 56777777888999999999887 6788888888899


Q ss_pred             EEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778          397 GLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA  454 (459)
Q Consensus       397 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  454 (459)
                      ++-.++|++....++.+.++.+|..|+|.+|.+. .+|..++++.+|++|.+++|+|.
T Consensus       485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9999999999666667999999999999999999 78989999999999999999998

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.5e-32  Score=243.47  Aligned_cols=346  Identities=26%  Similarity=0.336  Sum_probs=167.9

Q ss_pred             ccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCC
Q 039778           45 EGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKL  124 (459)
Q Consensus        45 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  124 (459)
                      ..++.++-|.|....+. ..|+.++.|.+|++|++..+......  ..+..++.|+.+++.+|++....+|..+.++..|
T Consensus        29 ~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL  105 (1255)
T KOG0444|consen   29 EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL  105 (1255)
T ss_pred             HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence            33344444444333332 33344444444444444444333111  1344444445555544444444445555555555


Q ss_pred             cEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEE
Q 039778          125 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLH  204 (459)
Q Consensus       125 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  204 (459)
                      ..|++++|++..   .|..+.+.+++-.|++++|++.+++..  .+.+++.|-.|++++|++. ..|.....+..|++|+
T Consensus       106 t~lDLShNqL~E---vP~~LE~AKn~iVLNLS~N~IetIPn~--lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  106 TILDLSHNQLRE---VPTNLEYAKNSIVLNLSYNNIETIPNS--LFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             eeeecchhhhhh---cchhhhhhcCcEEEEcccCccccCCch--HHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence            555555555444   444444445555555555555444333  2334455555555555543 2333444455555555


Q ss_pred             cCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccc
Q 039778          205 VPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQ  284 (459)
Q Consensus       205 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  284 (459)
                      ++++.+. .+....+..+..|+.|.+++.+.+..                       .++.....+.+|..++++.|.+.
T Consensus       180 Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~-----------------------N~Ptsld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  180 LSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLD-----------------------NIPTSLDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             cCCChhh-HHHHhcCccchhhhhhhcccccchhh-----------------------cCCCchhhhhhhhhccccccCCC
Confidence            5555443 11122233333444444444332200                       00111222334444444444444


Q ss_pred             cccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccc-cccc
Q 039778          285 GHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG-QLFS  363 (459)
Q Consensus       285 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~  363 (459)
                       .+|..+.. +++|+.|+|++|.++. .........+|++|+++.|+++ .+|..+++ +++|+.|.+.+|+++- .+|.
T Consensus       236 -~vPecly~-l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  236 -IVPECLYK-LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             -cchHHHhh-hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcccccCCcc
Confidence             45555444 5666666666666652 2222333445666666666665 55555543 6666666666665542 2455


Q ss_pred             ccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          364 KKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       364 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      +++.+..|+.+...+|.+. .+|..++.|..|+.|.++.|++. .+|+++--++.|+.|++..|.-.
T Consensus       311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            5556666666666655544 45566666666666666666655 56666655666666666666444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.5e-32  Score=242.57  Aligned_cols=384  Identities=24%  Similarity=0.288  Sum_probs=310.3

Q ss_pred             CCCCcEEEccCCccc-ccchhhhcCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778            1 LSNLKFLDLSHNSFN-NSVLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN   78 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   78 (459)
                      +|-+|-+|+++|+++ +..|+.+..|+.+++|.+....+.. +..++.+.+|++|.++.|++. ..-..+..+|.||++.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            466788999999998 5788899999999999999888765 567899999999999999976 4556788999999999


Q ss_pred             ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCccccc-ccCCCcccEEEccC
Q 039778           79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS-IGSFPSLKTLYLKS  157 (459)
Q Consensus        79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~  157 (459)
                      +..+.....--+..+..+..|.+||+++|.+.+.  |..+...+++-.|++++|++..   +|.. +.+++.|-.|++++
T Consensus        85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev--P~~LE~AKn~iVLNLS~N~Iet---IPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV--PTNLEYAKNSIVLNLSYNNIET---IPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             hhccccccCCCCchhcccccceeeecchhhhhhc--chhhhhhcCcEEEEcccCcccc---CCchHHHhhHhHhhhcccc
Confidence            9888776433334677899999999999999988  8899999999999999999977   5544 45889999999999


Q ss_pred             CcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeee
Q 039778          158 NNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQI  237 (459)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  237 (459)
                      |++...++-   +..+..|++|.+++|++...--..++.+++|+.|++++.+-+-.-.+..+..+.+|..++++.|.+..
T Consensus       160 NrLe~LPPQ---~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~  236 (1255)
T KOG0444|consen  160 NRLEMLPPQ---IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI  236 (1255)
T ss_pred             chhhhcCHH---HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc
Confidence            998766554   67788999999999988765555666788899999999876533346778899999999999987652


Q ss_pred             ecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCccc
Q 039778          238 PISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFG  317 (459)
Q Consensus       238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~  317 (459)
                      .                         +......++|+.|++++|.++ ++...... ..+|+.|+++.|.++ ..+..++
T Consensus       237 v-------------------------Pecly~l~~LrrLNLS~N~it-eL~~~~~~-W~~lEtLNlSrNQLt-~LP~avc  288 (1255)
T KOG0444|consen  237 V-------------------------PECLYKLRNLRRLNLSGNKIT-ELNMTEGE-WENLETLNLSRNQLT-VLPDAVC  288 (1255)
T ss_pred             c-------------------------hHHHhhhhhhheeccCcCcee-eeeccHHH-Hhhhhhhccccchhc-cchHHHh
Confidence            1                         112344678999999999998 44444443 689999999999998 7788999


Q ss_pred             CCCCCcEEEccCCcccc-ccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCc
Q 039778          318 DMNSLIYLDLSNNQLTG-EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ  396 (459)
Q Consensus       318 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  396 (459)
                      .++.|+.|...+|+++- .+|..+. .+.+|+.+...+|.+. ..|+++..|+.|+.|.++.|.+. .+|.++.-++.|+
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPSGIG-KL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~  365 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPSGIG-KLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK  365 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCccchh-hhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcc
Confidence            99999999999998763 3565554 4889999999999876 67899999999999999999977 6899999999999


Q ss_pred             EEEcccccccCCCcccccCcccccEEEc
Q 039778          397 GLYISDNDITGSIPTWIGNISFLDAIIM  424 (459)
Q Consensus       397 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l  424 (459)
                      .|++..|+-.-..|.--..-++++.-++
T Consensus       366 vLDlreNpnLVMPPKP~da~~~lefYNI  393 (1255)
T KOG0444|consen  366 VLDLRENPNLVMPPKPNDARKKLEFYNI  393 (1255)
T ss_pred             eeeccCCcCccCCCCcchhhhcceeeec
Confidence            9999999877333322112244554433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=3.4e-31  Score=223.69  Aligned_cols=433  Identities=27%  Similarity=0.340  Sum_probs=283.9

Q ss_pred             CcEEEccCCcccccchhhhcCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCC
Q 039778            4 LKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT   82 (459)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   82 (459)
                      +..+++++|.++ ...+.+..+..|..++++.+.... ++++..+..++.++.+.+++. +.+..+..+++|++++++.+
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n  124 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN  124 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc
Confidence            556778888876 556667778888888888887665 667888888888888888876 78888888888888888888


Q ss_pred             cceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccc
Q 039778           83 GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK  162 (459)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  162 (459)
                      ... ..+. .+..+..|+.++..++++...  |..+..+.++..+++.++.+..   +++..-+++.|++++...|.+..
T Consensus       125 ~~~-el~~-~i~~~~~l~dl~~~~N~i~sl--p~~~~~~~~l~~l~~~~n~l~~---l~~~~i~m~~L~~ld~~~N~L~t  197 (565)
T KOG0472|consen  125 ELK-ELPD-SIGRLLDLEDLDATNNQISSL--PEDMVNLSKLSKLDLEGNKLKA---LPENHIAMKRLKHLDCNSNLLET  197 (565)
T ss_pred             cee-ecCc-hHHHHhhhhhhhccccccccC--chHHHHHHHHHHhhccccchhh---CCHHHHHHHHHHhcccchhhhhc
Confidence            776 3433 677788888888888888877  7788888888888888887776   44444457888888887777665


Q ss_pred             cccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccc
Q 039778          163 TVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLE  242 (459)
Q Consensus       163 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  242 (459)
                      .++.   ++.+.+|+-|++..|++. ..| .|+.|..|+++++..+++. .++.+...+++++..|++++|.+....+  
T Consensus       198 lP~~---lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pd--  269 (565)
T KOG0472|consen  198 LPPE---LGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPD--  269 (565)
T ss_pred             CChh---hcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCch--
Confidence            5443   667777888888888765 345 5777888888888888776 5656666778888888888887753222  


Q ss_pred             cccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhh-----cCCCccE----EEeecCcCC----
Q 039778          243 PFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK-----VLPNLGF----LSITFNAFN----  309 (459)
Q Consensus       243 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~----L~L~~~~~~----  309 (459)
                      ....+++++.++..+-.-...+...+.+ .|+.|.+.||.+.. +-..+.+     .+..|+.    =.++...-+    
T Consensus       270 e~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~  347 (565)
T KOG0472|consen  270 EICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA  347 (565)
T ss_pred             HHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence            1122233333332222222233334444 55666666654331 1000000     0000000    000000000    


Q ss_pred             ----CCCCCcccCCCCCcEEEccCCccccccchhHHhccc--ccceeeccccccc-----------------------cc
Q 039778          310 ----GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF--NLEYLLLSNNSLQ-----------------------GQ  360 (459)
Q Consensus       310 ----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~i~-----------------------~~  360 (459)
                          ...........+.+.|++++-+++ .+|...|....  -++.++++.|++.                       +.
T Consensus       348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isf  426 (565)
T KOG0472|consen  348 MTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISF  426 (565)
T ss_pred             CCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcccc
Confidence                000011112234455555555555 55555544221  1444444444432                       24


Q ss_pred             cccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCC
Q 039778          361 LFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQL  440 (459)
Q Consensus       361 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  440 (459)
                      .+..+..+++|+.|++++|.+. .+|..+..+..|++|+++.|++. .+|.++-....++.+..+++++....|+.+.++
T Consensus       427 v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  427 VPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM  504 (565)
T ss_pred             chHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence            4555677899999999988766 67888888888999999999888 888887777778877777788885556669999


Q ss_pred             CcccEEeccCCcccccCCC
Q 039778          441 DYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       441 ~~L~~L~l~~~~~~~~~p~  459 (459)
                      ..|.+||+++|.+. .+|+
T Consensus       505 ~nL~tLDL~nNdlq-~IPp  522 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQ-QIPP  522 (565)
T ss_pred             hhcceeccCCCchh-hCCh
Confidence            99999999999987 6663

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=2.1e-29  Score=234.17  Aligned_cols=427  Identities=25%  Similarity=0.268  Sum_probs=216.4

Q ss_pred             cEEEccCCcccccchhhhcCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCc
Q 039778            5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATG   83 (459)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   83 (459)
                      ..|++++|.+-....+.+.++-+|++|+++++.+.+ +..+..+++|+.|+++.+-+. ..+....++.+|+++.+.++.
T Consensus        24 ~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~  102 (1081)
T KOG0618|consen   24 QILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNR  102 (1081)
T ss_pred             HhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccch
Confidence            345555554444444455444446666666665444 344555556666666655553 344455555566666665544


Q ss_pred             ceeeeccccccCCCCCcEEECcccccCCccCcccccCCCC-------------------CcEEecCCCccCCCCcccccc
Q 039778           84 FKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRK-------------------LRFLDLSGLRIRDGSKVLHSI  144 (459)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------------L~~L~l~~~~~~~~~~~~~~~  144 (459)
                      .. . .+..+..+.+|+.|+++.+.+...  |..+..+..                   ++++++..+.+...  ++..+
T Consensus       103 l~-~-lP~~~~~lknl~~LdlS~N~f~~~--Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~--~~~~i  176 (1081)
T KOG0618|consen  103 LQ-S-LPASISELKNLQYLDLSFNHFGPI--PLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGS--FLIDI  176 (1081)
T ss_pred             hh-c-CchhHHhhhcccccccchhccCCC--chhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccc--hhcch
Confidence            32 2 222455555566666655554443  233322222                   33444443333321  33333


Q ss_pred             cCCCcccEEEccCCcccccccc---------------cccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCc
Q 039778          145 GSFPSLKTLYLKSNNFAKTVTT---------------TQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQ  209 (459)
Q Consensus       145 ~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  209 (459)
                      ..+.+  .+++++|.+....-.               ......-++|+.|+.+.|.++.....  ....+|++++++.+.
T Consensus       177 ~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~  252 (1081)
T KOG0618|consen  177 YNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNN  252 (1081)
T ss_pred             hhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhh
Confidence            33333  456665554311000               00011234555556666655532222  123678888888887


Q ss_pred             CcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccch
Q 039778          210 LTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV  289 (459)
Q Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  289 (459)
                      +. .++ .++..+++|+.+....|.+.  ..........+++.+.+.......+.........|++|++..+.+. ..|.
T Consensus       253 l~-~lp-~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~  327 (1081)
T KOG0618|consen  253 LS-NLP-EWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPD  327 (1081)
T ss_pred             hh-cch-HHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccch
Confidence            76 554 77788888888888887762  2222333344444444444444444555556788888888888877 5555


Q ss_pred             hhhhcCCC-ccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccc
Q 039778          290 EIGKVLPN-LGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNL  368 (459)
Q Consensus       290 ~~~~~~~~-L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~  368 (459)
                      .++..... +..++.+.+.+.......-...+.|+.|++.+|.+++....- +.++++|+.|++++|.+.......+.++
T Consensus       328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kl  406 (1081)
T KOG0618|consen  328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKL  406 (1081)
T ss_pred             HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhch
Confidence            44332222 444444444443222111222344555555555555333222 2235556666666665554444455555


Q ss_pred             cCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCC-CchhhcCCCcccEEe
Q 039778          369 TKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGP-IPSEFCQLDYLEILD  447 (459)
Q Consensus       369 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~  447 (459)
                      +.|+.|+++||+++ .+|..+.++..|++|....|.+. ..| .+..+++|+.+|++.|+++.. +|.. ...+.|+.||
T Consensus       407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLd  482 (1081)
T KOG0618|consen  407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLD  482 (1081)
T ss_pred             HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh-CCCcccceee
Confidence            55666666666555 34455555555666655555555 444 445555666666665555422 2221 1225556666


Q ss_pred             ccCCc
Q 039778          448 LSKNN  452 (459)
Q Consensus       448 l~~~~  452 (459)
                      +++|.
T Consensus       483 lSGN~  487 (1081)
T KOG0618|consen  483 LSGNT  487 (1081)
T ss_pred             ccCCc
Confidence            65554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-28  Score=228.07  Aligned_cols=416  Identities=28%  Similarity=0.334  Sum_probs=281.0

Q ss_pred             EEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCc
Q 039778            6 FLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATG   83 (459)
Q Consensus         6 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   83 (459)
                      .+|++.+.++ ..|..+..-..++.|+++.|.+.+  ...+....+|+.|+++++.+. ..+..+..+++|+.|.++.+.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence            4677777776 555566555669999999997665  445666778999999999987 678889999999999999988


Q ss_pred             ceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccccc
Q 039778           84 FKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKT  163 (459)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  163 (459)
                      +. ..+ ....++.+|+++.+.++.....  |..+..+.+|..|+++.|.+..   .|..+..+..+..+..++|.....
T Consensus        80 i~-~vp-~s~~~~~~l~~lnL~~n~l~~l--P~~~~~lknl~~LdlS~N~f~~---~Pl~i~~lt~~~~~~~s~N~~~~~  152 (1081)
T KOG0618|consen   80 IR-SVP-SSCSNMRNLQYLNLKNNRLQSL--PASISELKNLQYLDLSFNHFGP---IPLVIEVLTAEEELAASNNEKIQR  152 (1081)
T ss_pred             Hh-hCc-hhhhhhhcchhheeccchhhcC--chhHHhhhcccccccchhccCC---CchhHHhhhHHHHHhhhcchhhhh
Confidence            76 444 4778899999999999998888  8899999999999999998876   677777777777777777721111


Q ss_pred             ccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccccc
Q 039778          164 VTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEP  243 (459)
Q Consensus       164 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  243 (459)
                            ++.. .++.+++..+.+.+.+......+..  .++++++.+.    ...+..+++|+.+....|.+..-...  
T Consensus       153 ------lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls~l~~~--  217 (1081)
T KOG0618|consen  153 ------LGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME----VLDLSNLANLEVLHCERNQLSELEIS--  217 (1081)
T ss_pred             ------hccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh----hhhhhhccchhhhhhhhcccceEEec--
Confidence                  1111 1444455444444444433333333  4555555443    12233344444444433332210000  


Q ss_pred             ccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCC-------------
Q 039778          244 FFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG-------------  310 (459)
Q Consensus       244 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-------------  310 (459)
                         .++++.+........ .........+|++++++.+.+. .+|.|+.. +++|+.+...+|.+..             
T Consensus       218 ---g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~~lp~ri~~~~~L~~  291 (1081)
T KOG0618|consen  218 ---GPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLVALPLRISRITSLVS  291 (1081)
T ss_pred             ---CcchheeeeccCcce-eeccccccccceeeecchhhhh-cchHHHHh-cccceEecccchhHHhhHHHHhhhhhHHH
Confidence               011111110000000 0111122344555555555554 44444433 5555555544443321             


Q ss_pred             ---------CCCCcccCCCCCcEEEccCCccccccchhHHh-------------------------cccccceeeccccc
Q 039778          311 ---------SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM-------------------------GCFNLEYLLLSNNS  356 (459)
Q Consensus       311 ---------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------------~~~~L~~L~l~~~~  356 (459)
                               ..+....+.+.|++|++..|++. ..|..++.                         ..+.|+.|.+.+|.
T Consensus       292 l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~  370 (1081)
T KOG0618|consen  292 LSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH  370 (1081)
T ss_pred             HHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence                     23344555778888888888876 55543332                         23468888888999


Q ss_pred             cccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchh
Q 039778          357 LQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSE  436 (459)
Q Consensus       357 i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  436 (459)
                      +++..+..+.+++.|+.|+|++|.+....+..+.++..|++|+++||.++ .+|+.+..++.|++|...+|.+. ..| .
T Consensus       371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e  447 (1081)
T KOG0618|consen  371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E  447 (1081)
T ss_pred             ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence            99888999999999999999999988766677889999999999999999 88899999999999999999999 788 6


Q ss_pred             hcCCCcccEEeccCCcccc
Q 039778          437 FCQLDYLEILDLSKNNIAG  455 (459)
Q Consensus       437 ~~~~~~L~~L~l~~~~~~~  455 (459)
                      +.++++|+.+|++.|+++.
T Consensus       448 ~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  448 LAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             hhhcCcceEEecccchhhh
Confidence            8999999999999998863

>PLN03210 Resistant to P

Probab=99.93  E-value=6.6e-24  Score=218.75  Aligned_cols=342  Identities=21%  Similarity=0.260  Sum_probs=188.6

Q ss_pred             ccccccCCCCcEEEccCCcc------eeeeccccccCC-CCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCC
Q 039778           65 LSSLTALSSLRKLNLMATGF------KGTFDVQELDSL-SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG  137 (459)
Q Consensus        65 ~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  137 (459)
                      ..+|.+|++|+.|.+..+..      ...++ ..+..+ ++|+.|.+.++.+...  |..+ ...+|++|++.++.+.. 
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~l--P~~f-~~~~L~~L~L~~s~l~~-  625 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCM--PSNF-RPENLVKLQMQGSKLEK-  625 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCC--CCcC-CccCCcEEECcCccccc-
Confidence            44567777777777754321      11112 133333 4577777777766665  4444 45677777777776654 


Q ss_pred             CcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCC
Q 039778          138 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSS  217 (459)
Q Consensus       138 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  217 (459)
                        ++..+..+++|+.++++++......+   .+..+++|+.|++.+|.....+|..+..+++|+.|++++|.....++..
T Consensus       626 --L~~~~~~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        626 --LWDGVHSLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             --cccccccCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence              55556677777777777665433222   2556677777777777655566767777777777777776544344322


Q ss_pred             cccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCC
Q 039778          218 PLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPN  297 (459)
Q Consensus       218 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  297 (459)
                       . ++++|+.|++++|.....     +                      .....+|+.|+++++.+. .+|...  .+++
T Consensus       701 -i-~l~sL~~L~Lsgc~~L~~-----~----------------------p~~~~nL~~L~L~~n~i~-~lP~~~--~l~~  748 (1153)
T PLN03210        701 -I-NLKSLYRLNLSGCSRLKS-----F----------------------PDISTNISWLDLDETAIE-EFPSNL--RLEN  748 (1153)
T ss_pred             -C-CCCCCCEEeCCCCCCccc-----c----------------------ccccCCcCeeecCCCccc-cccccc--cccc
Confidence             1 567777777776532100     0                      011234555666655544 344332  1455


Q ss_pred             ccEEEeecCcCCC-------CCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccC
Q 039778          298 LGFLSITFNAFNG-------SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTK  370 (459)
Q Consensus       298 L~~L~L~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~  370 (459)
                      |+.|.+..+....       ..+.....+++|+.|++++|.....+|..+ .++++|+.|++++|.....++... .+++
T Consensus       749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~~-~L~s  826 (1153)
T PLN03210        749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTGI-NLES  826 (1153)
T ss_pred             cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCCC-Cccc
Confidence            5555554432110       011112223456666666664444555543 246666666666664333333333 4566


Q ss_pred             CceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccC
Q 039778          371 LKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK  450 (459)
Q Consensus       371 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  450 (459)
                      |++|++++|......|..   ..+|++|++++|.+. .+|..+..+++|+.|++++|.....+|..+..+++|+.+++++
T Consensus       827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD  902 (1153)
T ss_pred             cCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence            666666666544333321   245666666666665 5555666666666666666644445555555666666666666


Q ss_pred             Cccc
Q 039778          451 NNIA  454 (459)
Q Consensus       451 ~~~~  454 (459)
                      |...
T Consensus       903 C~~L  906 (1153)
T PLN03210        903 CGAL  906 (1153)
T ss_pred             Cccc
Confidence            6533

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=5.9e-22  Score=204.41  Aligned_cols=346  Identities=19%  Similarity=0.221  Sum_probs=179.3

Q ss_pred             cchhhhcCCccccEEEecccccc--------CCcccccC-ccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceee
Q 039778           17 SVLSSLAGLSSLKNLSLAYNRLE--------GSINIEGM-NMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGT   87 (459)
Q Consensus        17 ~~~~~~~~~~~L~~L~l~~~~~~--------~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   87 (459)
                      ....+|.+|++|+.|.+..+...        -+..+..+ ++|+.|.+.++.+. ..+..+ ...+|+.|++.++.+. .
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            34455667777777777544211        12233333 34666666666553 444444 3466666776666554 2


Q ss_pred             eccccccCCCCCcEEECcccc-cCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccc
Q 039778           88 FDVQELDSLSNLEELDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT  166 (459)
Q Consensus        88 ~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  166 (459)
                      +. ..+..+++|+.++++++. +..+  | .+..+++|++|++.+|.....  +|..+.++++|+.|++++|......+.
T Consensus       626 L~-~~~~~l~~Lk~L~Ls~~~~l~~i--p-~ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        626 LW-DGVHSLTGLRNIDLRGSKNLKEI--P-DLSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             cc-cccccCCCCCEEECCCCCCcCcC--C-ccccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCC
Confidence            22 244556666777766553 2222  2 355566666666666543322  556666666666666666543322222


Q ss_pred             cccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccc
Q 039778          167 TQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFN  246 (459)
Q Consensus       167 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  246 (459)
                        . ..+++|+.|++++|......|..   ..+|++|+++++.+. .++..  ..+++|+.|.+.++....  ...... 
T Consensus       700 --~-i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~--~~l~~L~~L~l~~~~~~~--l~~~~~-  767 (1153)
T PLN03210        700 --G-INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN--LRLENLDELILCEMKSEK--LWERVQ-  767 (1153)
T ss_pred             --c-CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc--ccccccccccccccchhh--cccccc-
Confidence              1 14556666666666543333321   245666666666543 23211  134555555554322100  000000 


Q ss_pred             cCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEE
Q 039778          247 YSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLD  326 (459)
Q Consensus       247 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  326 (459)
                                    .........+++|+.|++++|.....+|..+.. +++|+.|++++|......+... .+++|+.|+
T Consensus       768 --------------~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~  831 (1153)
T PLN03210        768 --------------PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI-NLESLESLD  831 (1153)
T ss_pred             --------------ccchhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence                          000011123456666777666555456655443 6666666666664433333333 456666666


Q ss_pred             ccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccc
Q 039778          327 LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDND  404 (459)
Q Consensus       327 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  404 (459)
                      +++|.....+|..    .++|+.|++++|.+. ..|..+..+++|++|++.+|+....++..+..+++|+.+++++|.
T Consensus       832 Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        832 LSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            6666433233321    346666666666665 344555666666666666665444555555566666666666664

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=1.6e-22  Score=171.24  Aligned_cols=284  Identities=23%  Similarity=0.214  Sum_probs=173.0

Q ss_pred             CCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCC-CccCCCCcccccccCCCccc
Q 039778           73 SLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSG-LRIRDGSKVLHSIGSFPSLK  151 (459)
Q Consensus        73 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~  151 (459)
                      .-..|.|..|.+. .++..+|..+++|+.||++.|.|..+. |.+|..++.+..|.+-+ |++.+.  -...|+.+..++
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l--~k~~F~gL~slq  143 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDL--PKGAFGGLSSLQ  143 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhh--hhhHhhhHHHHH
Confidence            4556677777766 666667777777777777777777765 56677777666666655 666553  223456666666


Q ss_pred             EEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEE---
Q 039778          152 TLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVL---  228 (459)
Q Consensus       152 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L---  228 (459)
                      .|.+.-+++.-....  .+..++++..|.+.+|.+..+-...|..+..++++++..+.+..      .-+++.+...   
T Consensus       144 rLllNan~i~Cir~~--al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~~~a~  215 (498)
T KOG4237|consen  144 RLLLNANHINCIRQD--ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLADDLAM  215 (498)
T ss_pred             HHhcChhhhcchhHH--HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc------ccccchhhhHHhh
Confidence            666666655443332  45566666666666665544333455555666666665544221      0111111110   


Q ss_pred             ---EeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeec
Q 039778          229 ---LLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITF  305 (459)
Q Consensus       229 ---~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~  305 (459)
                         ..++-...  .       ...+..-+......   .........+..=.-+.+...+..|...+..+++|+++++++
T Consensus       216 ~~ietsgarc~--~-------p~rl~~~Ri~q~~a---~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn  283 (498)
T KOG4237|consen  216 NPIETSGARCV--S-------PYRLYYKRINQEDA---RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN  283 (498)
T ss_pred             chhhcccceec--c-------hHHHHHHHhcccch---hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence               00110000  0       00000000000000   000000111111122334344466777777899999999999


Q ss_pred             CcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcc
Q 039778          306 NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHF  381 (459)
Q Consensus       306 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~  381 (459)
                      |+++.+-..+|.+...++.|.+.+|++. .+...+|.++..|+.|++.+|+|+...+.+|....+|.+|++-.|++
T Consensus       284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  284 NKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             CccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            9999888889999999999999999987 88888999999999999999999988888998888999999887765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.79  E-value=3.6e-21  Score=163.06  Aligned_cols=237  Identities=25%  Similarity=0.327  Sum_probs=145.7

Q ss_pred             CCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCC-CCCCcccccccccCCCCcEEEc
Q 039778            3 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSG-NKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      ....|+|..|.|+.+.+++|+.+++||.|+|++|.+..  +.+|.+++.|.+|-+.+ |+|++....+|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            34678888899998999999999999999999987664  66788888877777766 7888777788888888888888


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccC------------------------
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR------------------------  135 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------  135 (459)
                      .-+.+. -+....+..+++|..|.+.++.+..+. ...+..+..++.+.+-.+.+.                        
T Consensus       148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~-~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSIC-KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             Chhhhc-chhHHHHHHhhhcchhcccchhhhhhc-cccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            777665 334456777777777777777655442 223444444444443332210                        


Q ss_pred             ------------------------------------CCCcccccccCCCcccEEEccCCcccccccccccccCcccccEE
Q 039778          136 ------------------------------------DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDL  179 (459)
Q Consensus       136 ------------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  179 (459)
                                                          +...-...|+.+++|+++++++|++..+...  .+.+...+++|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~--aFe~~a~l~eL  303 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG--AFEGAAELQEL  303 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh--hhcchhhhhhh
Confidence                                                0000011244555566666665555443332  34455555555


Q ss_pred             EccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccc
Q 039778          180 YIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPF  244 (459)
Q Consensus       180 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  244 (459)
                      .+.+|++..+....|.++..|++|++.+|+++ .+.+..+.....|..|.+-.|++..+...+++
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl  367 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWL  367 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCcccCccchHHH
Confidence            55555555444455555555566666655555 34445555555555555555555544444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=2.3e-18  Score=165.50  Aligned_cols=265  Identities=23%  Similarity=0.247  Sum_probs=145.6

Q ss_pred             CCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccc
Q 039778           97 SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL  176 (459)
Q Consensus        97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  176 (459)
                      .+-..|+++++.++.+  |..+.  ++|+.|++.+|.+..   ++.   ..++|++|++++|++...+..      .++|
T Consensus       201 ~~~~~LdLs~~~LtsL--P~~l~--~~L~~L~L~~N~Lt~---LP~---lp~~Lk~LdLs~N~LtsLP~l------p~sL  264 (788)
T PRK15387        201 NGNAVLNVGESGLTTL--PDCLP--AHITTLVIPDNNLTS---LPA---LPPELRTLEVSGNQLTSLPVL------PPGL  264 (788)
T ss_pred             CCCcEEEcCCCCCCcC--Ccchh--cCCCEEEccCCcCCC---CCC---CCCCCcEEEecCCccCcccCc------cccc
Confidence            3456777877777765  44443  367788888777765   332   246777888887777654321      2467


Q ss_pred             cEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecC
Q 039778          177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHAN  256 (459)
Q Consensus       177 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~  256 (459)
                      +.|++.+|.+.. +|..   .+.|+.|++++|.+. .++.    ..++|+.|++++|.+....                 
T Consensus       265 ~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~Lp-----------------  318 (788)
T PRK15387        265 LELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLP-----------------  318 (788)
T ss_pred             ceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCccccCC-----------------
Confidence            777777776653 2321   246777777777665 3321    2356777777776554100                 


Q ss_pred             ccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCcccccc
Q 039778          257 NSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEI  336 (459)
Q Consensus       257 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  336 (459)
                                 ....+|+.|++++|.+. .+|..    ..+|+.|++++|.+... +..   .++|+.|++.+|.+. .+
T Consensus       319 -----------~lp~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~L  377 (788)
T PRK15387        319 -----------ALPSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SL  377 (788)
T ss_pred             -----------CCcccccccccccCccc-ccccc----ccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cC
Confidence                       01134555666666655 34421    24566666666666532 211   235556666666655 34


Q ss_pred             chhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCc
Q 039778          337 PEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNI  416 (459)
Q Consensus       337 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  416 (459)
                      |..    .++|+.|++++|++.+ ++..   .++|+.|++++|.+.. +|..   ..+|+.|++++|++. .+|..+.++
T Consensus       378 P~l----~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L  444 (788)
T PRK15387        378 PAL----PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHL  444 (788)
T ss_pred             ccc----ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhc
Confidence            432    2356666666665553 2211   2356666666665553 3322   124555666666655 555555556


Q ss_pred             ccccEEEcCCCcccCCCchhh
Q 039778          417 SFLDAIIMPDNHLEGPIPSEF  437 (459)
Q Consensus       417 ~~L~~L~l~~~~~~~~~~~~~  437 (459)
                      ++|+.|+|++|++++..+..+
T Consensus       445 ~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        445 SSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cCCCeEECCCCCCCchHHHHH
Confidence            666666666666655444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.73  E-value=8.6e-17  Score=154.80  Aligned_cols=133  Identities=19%  Similarity=0.210  Sum_probs=63.5

Q ss_pred             CceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEec
Q 039778           50 LESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDL  129 (459)
Q Consensus        50 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  129 (459)
                      -..|+++.+.++ .+|..+.  ++|+.|.+.+|.+. .++.    ..++|++|++++|.+..+  |.   ..++|++|++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL--P~---lp~sL~~L~L  269 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL--PV---LPPGLLELSI  269 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc--cC---cccccceeec
Confidence            445666666554 3444332  35666666665554 2221    235566666666655544  22   1345556666


Q ss_pred             CCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCc
Q 039778          130 SGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQ  209 (459)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  209 (459)
                      .+|.+..   ++..   .++|+.|++++|++...+.      ..++|+.|++++|.+... |..   ...|+.|++++|.
T Consensus       270 s~N~L~~---Lp~l---p~~L~~L~Ls~N~Lt~LP~------~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~  333 (788)
T PRK15387        270 FSNPLTH---LPAL---PSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQ  333 (788)
T ss_pred             cCCchhh---hhhc---hhhcCEEECcCCccccccc------cccccceeECCCCccccC-CCC---cccccccccccCc
Confidence            6555543   2221   1345555555555543321      123455555555554432 211   1234555555555


Q ss_pred             Cc
Q 039778          210 LT  211 (459)
Q Consensus       210 ~~  211 (459)
                      +.
T Consensus       334 L~  335 (788)
T PRK15387        334 LT  335 (788)
T ss_pred             cc
Confidence            43

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.2e-18  Score=157.04  Aligned_cols=158  Identities=26%  Similarity=0.286  Sum_probs=102.6

Q ss_pred             CCccEEEeecCcCCCC----CCCcccCCCCCcEEEccCCccccccchhHHh---cccccceeeccccccccc----cccc
Q 039778          296 PNLGFLSITFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM---GCFNLEYLLLSNNSLQGQ----LFSK  364 (459)
Q Consensus       296 ~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~----~~~~  364 (459)
                      ++|+.+++++|.+...    ....+..++.|++|++++|.+.+.....+..   ..++|++|++++|.+.+.    ....
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            5556666666655421    2234455667888888888776433222222   345888888888877643    2334


Q ss_pred             cccccCCceEEccCCcccCCCccccc-----ccCCCcEEEcccccccC----CCcccccCcccccEEEcCCCcccCC---
Q 039778          365 KNNLTKLKRLNLDGNHFIGDIPESLS-----NCSSLQGLYISDNDITG----SIPTWIGNISFLDAIIMPDNHLEGP---  432 (459)
Q Consensus       365 ~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~---  432 (459)
                      +..+++|++|++++|++.+.....+.     ..++|++|++++|.+++    .+...+...++|+.+++++|.+...   
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~  296 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ  296 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence            56678899999999887753332222     23689999999998863    2334555668899999999988854   


Q ss_pred             -CchhhcCC-CcccEEeccCCcc
Q 039778          433 -IPSEFCQL-DYLEILDLSKNNI  453 (459)
Q Consensus       433 -~~~~~~~~-~~L~~L~l~~~~~  453 (459)
                       ....+... +.|+.+++.+|++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         297 LLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHhhcCCchhhcccCCCCC
Confidence             33334444 6889999988875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=6.4e-19  Score=158.89  Aligned_cols=42  Identities=24%  Similarity=0.190  Sum_probs=19.1

Q ss_pred             ccCCCCCcEEECcccccCCcc---CcccccCCCCCcEEecCCCcc
Q 039778           93 LDSLSNLEELDMSDNEIDNLV---VPKDYRGLRKLRFLDLSGLRI  134 (459)
Q Consensus        93 ~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~  134 (459)
                      +..++.|++++++++.+....   ++..+...+.+++++++++.+
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~   63 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET   63 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence            334445566666555543321   122333444455555554433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=3.2e-16  Score=151.85  Aligned_cols=119  Identities=24%  Similarity=0.326  Sum_probs=53.5

Q ss_pred             CCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEc
Q 039778          321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYI  400 (459)
Q Consensus       321 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  400 (459)
                      +|+.|++++|.++ .+|..+   .++|+.|++++|.++. ++..+  .++|+.|++++|++. .+|..+.  ++|++|++
T Consensus       305 sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdL  374 (754)
T PRK15370        305 GITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDV  374 (754)
T ss_pred             hHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEEC
Confidence            4445555555544 333322   2345555555555443 22222  135555555555544 2333332  34555555


Q ss_pred             ccccccCCCcccccCcccccEEEcCCCcccCCCchhhc----CCCcccEEeccCCcc
Q 039778          401 SDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFC----QLDYLEILDLSKNNI  453 (459)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~  453 (459)
                      ++|.+. .+|+.+.  .+|+.|++++|++. .+|..+.    .++.+..|++.+|++
T Consensus       375 s~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        375 SRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             CCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence            555554 3443332  24555555555554 3333222    234455555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.66  E-value=4.9e-16  Score=150.57  Aligned_cols=246  Identities=24%  Similarity=0.340  Sum_probs=119.4

Q ss_pred             CCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCccccc
Q 039778           98 NLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ  177 (459)
Q Consensus        98 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  177 (459)
                      +...|++++..++.+  |..+.  +.++.|++++|.+..   ++..+.  ++|+.|++++|.+...+..   +  ...|+
T Consensus       179 ~~~~L~L~~~~LtsL--P~~Ip--~~L~~L~Ls~N~Lts---LP~~l~--~nL~~L~Ls~N~LtsLP~~---l--~~~L~  244 (754)
T PRK15370        179 NKTELRLKILGLTTI--PACIP--EQITTLILDNNELKS---LPENLQ--GNIKTLYANSNQLTSIPAT---L--PDTIQ  244 (754)
T ss_pred             CceEEEeCCCCcCcC--Ccccc--cCCcEEEecCCCCCc---CChhhc--cCCCEEECCCCccccCChh---h--hcccc
Confidence            455666666665554  33332  356666666666654   333332  4666666666665543221   1  13566


Q ss_pred             EEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc
Q 039778          178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN  257 (459)
Q Consensus       178 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  257 (459)
                      .|++++|.+.. +|..+.  .+|+.|++++|.+. .++.. +  .++|+.|++++|.+....                  
T Consensus       245 ~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~-l--~~sL~~L~Ls~N~Lt~LP------------------  299 (754)
T PRK15370        245 EMELSINRITE-LPERLP--SALQSLDLFHNKIS-CLPEN-L--PEELRYLSVYDNSIRTLP------------------  299 (754)
T ss_pred             EEECcCCccCc-CChhHh--CCCCEEECcCCccC-ccccc-c--CCCCcEEECCCCccccCc------------------
Confidence            66666666552 343332  45666666666555 33221 1  135666666666443100                  


Q ss_pred             cccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccc
Q 039778          258 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP  337 (459)
Q Consensus       258 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  337 (459)
                               .....+|+.|++++|.+. .+|...   .++|+.|++++|.+.. ++..+.  ++|+.|++++|+++ .+|
T Consensus       300 ---------~~lp~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP  362 (754)
T PRK15370        300 ---------AHLPSGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLP  362 (754)
T ss_pred             ---------ccchhhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCC
Confidence                     001124555555555554 333322   2455555555555543 222221  35555566555554 444


Q ss_pred             hhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccc----cccCCCcEEEccccccc
Q 039778          338 EHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESL----SNCSSLQGLYISDNDIT  406 (459)
Q Consensus       338 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~  406 (459)
                      ..+   .++|++|++++|.+.. ++..+.  +.|+.|++++|.+. .+|..+    ..++++..|++.+|++.
T Consensus       363 ~~l---p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        363 ETL---PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhh---cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            332   2455555555555552 222221  24555555555554 233322    22345555566555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=8.7e-17  Score=120.90  Aligned_cols=163  Identities=31%  Similarity=0.442  Sum_probs=120.2

Q ss_pred             CCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccc
Q 039778          269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE  348 (459)
Q Consensus       269 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  348 (459)
                      ...+++.|.++.++++ .+|..+.. +.+|+.|++++|++. ..+.+++.+++|+.|+++-|++. ..|.. |..+|.|+
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg-fgs~p~le  105 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG-FGSFPALE  105 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc-cCCCchhh
Confidence            3456677788888877 66666655 777888888888776 56667777888888888877776 55554 34578888


Q ss_pred             eeecccccccc-ccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCC
Q 039778          349 YLLLSNNSLQG-QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDN  427 (459)
Q Consensus       349 ~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  427 (459)
                      .|++.+|.+.+ ..+..|..+..|+.|++++|++. .+|..+..+.+|+.|.+.+|.+. .+|..++.+..|+.|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            88888887765 35666777777888888888776 66777777888888888888777 77777777888888888888


Q ss_pred             cccCCCchhhcC
Q 039778          428 HLEGPIPSEFCQ  439 (459)
Q Consensus       428 ~~~~~~~~~~~~  439 (459)
                      +++ .+|..+++
T Consensus       184 rl~-vlppel~~  194 (264)
T KOG0617|consen  184 RLT-VLPPELAN  194 (264)
T ss_pred             eee-ecChhhhh
Confidence            877 56655554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=3.5e-17  Score=123.04  Aligned_cols=162  Identities=27%  Similarity=0.395  Sum_probs=138.1

Q ss_pred             CCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778           24 GLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL  102 (459)
Q Consensus        24 ~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  102 (459)
                      .+.++..|.+++|++.- ++.+..+.+|+.|+++++.+. .++..++.++.|+.|+++-+...  +.+..|++++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--cCccccCCCchhhhh
Confidence            56788899999998765 778999999999999999986 78889999999999999877653  345589999999999


Q ss_pred             ECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcc
Q 039778          103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYID  182 (459)
Q Consensus       103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  182 (459)
                      |++.+++.+...|..+..+..|+.|++.++.+..   +|..++++++|+.|.+..|.+...+.   .++.+..|++|.+.
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~---lp~dvg~lt~lqil~lrdndll~lpk---eig~lt~lrelhiq  181 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI---LPPDVGKLTNLQILSLRDNDLLSLPK---EIGDLTRLRELHIQ  181 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCccc---CChhhhhhcceeEEeeccCchhhCcH---HHHHHHHHHHHhcc
Confidence            9999999988889999999999999999998765   88999999999999999998765543   57889999999999


Q ss_pred             ccccccccchhcc
Q 039778          183 RNDFIGSLPWCLA  195 (459)
Q Consensus       183 ~~~~~~~~~~~l~  195 (459)
                      +|+++. .|..++
T Consensus       182 gnrl~v-lppel~  193 (264)
T KOG0617|consen  182 GNRLTV-LPPELA  193 (264)
T ss_pred             cceeee-cChhhh
Confidence            998874 443444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=4.5e-13  Score=116.05  Aligned_cols=160  Identities=20%  Similarity=0.211  Sum_probs=71.0

Q ss_pred             CCCccEEEeecCcCCCCC-CCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCce
Q 039778          295 LPNLGFLSITFNAFNGSI-PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR  373 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  373 (459)
                      +|+|+.|+++.|.+.... ...-..++.|+.|.+++|.++..-..+....+|+|+.|+++.|...........-+..|+.
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            555555555555443211 1111233455555555555553333344444555555555555311111112223345555


Q ss_pred             EEccCCcccCCC-cccccccCCCcEEEcccccccCCC-ccc-----ccCcccccEEEcCCCcccCC-CchhhcCCCcccE
Q 039778          374 LNLDGNHFIGDI-PESLSNCSSLQGLYISDNDITGSI-PTW-----IGNISFLDAIIMPDNHLEGP-IPSEFCQLDYLEI  445 (459)
Q Consensus       374 L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~  445 (459)
                      |+|++|++.+.. ......++.|..|+++.|++.+.. |++     ....++|+.|++..|++.+. ....++.+++|+.
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~  330 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH  330 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhh
Confidence            555555544221 122344555555555555554321 221     12345555555555555421 1123444455555


Q ss_pred             EeccCCccc
Q 039778          446 LDLSKNNIA  454 (459)
Q Consensus       446 L~l~~~~~~  454 (459)
                      |.+-.|.+.
T Consensus       331 l~~~~n~ln  339 (505)
T KOG3207|consen  331 LRITLNYLN  339 (505)
T ss_pred             hhccccccc
Confidence            555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.32  E-value=1.6e-13  Score=115.53  Aligned_cols=234  Identities=23%  Similarity=0.287  Sum_probs=171.6

Q ss_pred             CCCcEEEccCCcccccchhh----hcCCccccEEEeccccccC------------CcccccCccCceEEcCCCCCCcccc
Q 039778            2 SNLKFLDLSHNSFNNSVLSS----LAGLSSLKNLSLAYNRLEG------------SINIEGMNMLESLDLSGNKFNSSIL   65 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~------------~~~~~~l~~L~~L~l~~~~~~~~~~   65 (459)
                      ..++.|+||+|.+.......    +.+.++|+..+++.-....            ..++..+++|++|+||+|.+....+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            45789999999876544444    4567889998888653222            1235578899999999999877666


Q ss_pred             ccc----ccCCCCcEEEccCCcceeeec------------cccccCCCCCcEEECcccccCCccC---cccccCCCCCcE
Q 039778           66 SSL----TALSSLRKLNLMATGFKGTFD------------VQELDSLSNLEELDMSDNEIDNLVV---PKDYRGLRKLRF  126 (459)
Q Consensus        66 ~~~----~~l~~L~~L~l~~~~~~~~~~------------~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~  126 (459)
                      ..|    ..|..|++|.+.+|++...-.            .+...+-++|+++.+++|++.+...   ...+...+.|+.
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence            554    578999999999998863221            1234556899999999998766531   234677789999


Q ss_pred             EecCCCccCCCC--cccccccCCCcccEEEccCCcccccc--cccccccCcccccEEEccccccccccchhcc-----CC
Q 039778          127 LDLSGLRIRDGS--KVLHSIGSFPSLKTLYLKSNNFAKTV--TTTQGLCELVHLQDLYIDRNDFIGSLPWCLA-----NL  197 (459)
Q Consensus       127 L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~  197 (459)
                      +.+..|.+...+  .+...+..+++|+.|++..|.+....  .....+..+++|+++++++|.+.......+.     ..
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~  269 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA  269 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence            999999886543  35567789999999999999886432  2234577788999999999987664443332     36


Q ss_pred             CCCcEEEcCCCcCcCc---CCCCcccCCCcccEEEeeccee
Q 039778          198 TSLRVLHVPDNQLTGN---LSSSPLMHLTSIEVLLLSNNHF  235 (459)
Q Consensus       198 ~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~  235 (459)
                      +.|+.+.+.+|.++.+   .........|.|..|++++|.+
T Consensus       270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            8999999999987632   1123345579999999999988

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.31  E-value=3.1e-13  Score=113.78  Aligned_cols=135  Identities=21%  Similarity=0.241  Sum_probs=76.6

Q ss_pred             CCCccEEEeecCcCCCCC----CCcccCCCCCcEEEccCCcccccc---chhHHhcccccceeecccccccc----cccc
Q 039778          295 LPNLGFLSITFNAFNGSI----PSSFGDMNSLIYLDLSNNQLTGEI---PEHLAMGCFNLEYLLLSNNSLQG----QLFS  363 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~i~~----~~~~  363 (459)
                      .+.|+++....|++.+..    ...|...+.|+.+.+..|.+....   ....+.+||+|+.|++.+|-++.    .+..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            456777777766665432    233455566777777666554222   12234456777777777765543    2334


Q ss_pred             ccccccCCceEEccCCcccCCCcccc-----cccCCCcEEEcccccccCC----CcccccCcccccEEEcCCCcc
Q 039778          364 KKNNLTKLKRLNLDGNHFIGDIPESL-----SNCSSLQGLYISDNDITGS----IPTWIGNISFLDAIIMPDNHL  429 (459)
Q Consensus       364 ~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~  429 (459)
                      .+..++.|+.+++++|.+....+.++     ...++|++|.+.+|.++..    +..++...+.|..|+|++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            45556667777777776655544433     2346667777777665532    122333456666666766666

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.30  E-value=6e-14  Score=120.71  Aligned_cols=208  Identities=24%  Similarity=0.178  Sum_probs=112.5

Q ss_pred             ccccEEEeccccccCCc----ccccCccCceEEcCCCC-CCcccccccc-cCCCCcEEEccCCcceeeeccc-cccCCCC
Q 039778           26 SSLKNLSLAYNRLEGSI----NIEGMNMLESLDLSGNK-FNSSILSSLT-ALSSLRKLNLMATGFKGTFDVQ-ELDSLSN   98 (459)
Q Consensus        26 ~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~   98 (459)
                      ..||.|++.|+.-....    ...+++++++|.+.+|. +++.....++ .|++|++|++..|........+ ....|++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            36888888888644322    24568888888888875 5544444443 7888888888876544343333 2345788


Q ss_pred             CcEEECcccc-cCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCccccc
Q 039778           99 LEELDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ  177 (459)
Q Consensus        99 L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  177 (459)
                      |++++++.|. +....+......+..++.+.+.+|.-.....+...-..++.+.++++..|...+.......-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            8888887774 333233334556666777766665544433333334455556666655554333222222234455666


Q ss_pred             EEEccccc-cccccchhcc-CCCCCcEEEcCCCcC-cCcCCCCcccCCCcccEEEeecc
Q 039778          178 DLYIDRND-FIGSLPWCLA-NLTSLRVLHVPDNQL-TGNLSSSPLMHLTSIEVLLLSNN  233 (459)
Q Consensus       178 ~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~  233 (459)
                      ++..+++. +.+..-..++ .+.+|+.+.+..|+- ++.-....-.++++|+.+++..+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~  356 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC  356 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence            66666553 2222222332 356666666666642 21111222234455555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=3.9e-13  Score=116.43  Aligned_cols=226  Identities=21%  Similarity=0.197  Sum_probs=146.7

Q ss_pred             EccCCcccccchhhh----cCCccccEEEeccccccCCc---ccccCccCceEEcCCCCCCcc--cccccccCCCCcEEE
Q 039778            8 DLSHNSFNNSVLSSL----AGLSSLKNLSLAYNRLEGSI---NIEGMNMLESLDLSGNKFNSS--ILSSLTALSSLRKLN   78 (459)
Q Consensus         8 ~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~   78 (459)
                      .+++-.++....+.+    +.++.||.+.+.++.+...+   ....|++++.|||+.|-+...  .......+|+|+.|+
T Consensus        99 si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LN  178 (505)
T KOG3207|consen   99 SISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLN  178 (505)
T ss_pred             hhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcc
Confidence            344445555555554    23677888888888766543   567788888888888765532  233345788888888


Q ss_pred             ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCC
Q 039778           79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSN  158 (459)
Q Consensus        79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (459)
                      ++.|..........-..+++|+.|.++.|.++...+...+..+|.|+.|++.+|.....  -......+..|++|++++|
T Consensus       179 ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N  256 (505)
T KOG3207|consen  179 LSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNN  256 (505)
T ss_pred             cccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCC
Confidence            88887653333333335788888888888887665566677888888888888742211  2223345677888888888


Q ss_pred             cccccccccccccCcccccEEEcccccccccc-chh-----ccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeec
Q 039778          159 NFAKTVTTTQGLCELVHLQDLYIDRNDFIGSL-PWC-----LANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSN  232 (459)
Q Consensus       159 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  232 (459)
                      .+.+.... ...+.++.|+.|+++.+.+.+.- |..     ...+++|++|.+..|++.+.-....+..+++|+.+.+..
T Consensus       257 ~li~~~~~-~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  257 NLIDFDQG-YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             cccccccc-cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence            87654432 24567788888888887765421 211     234678888888888775322234455566677777666


Q ss_pred             ceee
Q 039778          233 NHFQ  236 (459)
Q Consensus       233 ~~~~  236 (459)
                      +.+.
T Consensus       336 n~ln  339 (505)
T KOG3207|consen  336 NYLN  339 (505)
T ss_pred             cccc
Confidence            6554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=6.7e-12  Score=99.07  Aligned_cols=128  Identities=32%  Similarity=0.424  Sum_probs=45.7

Q ss_pred             CccccEEEeccccccCCcccc-cCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccc-cCCCCCcEE
Q 039778           25 LSSLKNLSLAYNRLEGSINIE-GMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQEL-DSLSNLEEL  102 (459)
Q Consensus        25 ~~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L  102 (459)
                      +..++.|+++++.+.....+. .+.+|+.|++++|.+..  ...+..+++|++|++++|.+. .++. .+ ..+++|++|
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp~L~~L   93 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLPNLQEL   93 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-TT--EE
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCC-cccc-chHHhCCcCCEE
Confidence            345677777777776655565 46677777777777753  235666777777777777766 2322 22 346777777


Q ss_pred             ECcccccCCccCcccccCCCCCcEEecCCCccCCCCccc-ccccCCCcccEEEcc
Q 039778          103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL-HSIGSFPSLKTLYLK  156 (459)
Q Consensus       103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~  156 (459)
                      .+++|.+.+...-..+..+++|+.|++.+|-+....... ..+..+|+|+.||-.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            777777766654556677777777777777665443322 245577888877654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=5.2e-12  Score=104.31  Aligned_cols=135  Identities=24%  Similarity=0.262  Sum_probs=106.5

Q ss_pred             ccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCC
Q 039778          316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL  395 (459)
Q Consensus       316 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  395 (459)
                      ....+.|+++++++|.++ ++.+++- -.|.++.|+++.|.|...  ..+..+++|+.|++++|.++.. ..|-..+-++
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNI  354 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNI  354 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCE
Confidence            344567999999999988 7777665 389999999999998753  3467789999999999988744 3444567789


Q ss_pred             cEEEcccccccCCCcccccCcccccEEEcCCCcccCC-CchhhcCCCcccEEeccCCcccccCC
Q 039778          396 QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGP-IPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       396 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      ++|.+.+|.+.  ....+..+-+|..|++++|++.+. -...++++|-|+++.+.+|++. .+|
T Consensus       355 KtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~v  415 (490)
T KOG1259|consen  355 KTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSV  415 (490)
T ss_pred             eeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccc
Confidence            99999999875  334577888999999999988743 3456889999999999999998 444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=2.7e-11  Score=95.68  Aligned_cols=140  Identities=26%  Similarity=0.369  Sum_probs=53.8

Q ss_pred             cccccCCcccccCccCceEEcCCCCCCcccccccc-cCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCcc
Q 039778           35 YNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLT-ALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLV  113 (459)
Q Consensus        35 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  113 (459)
                      ...+.....+.+..++++|+|+++.|+.  .+.++ .+.+|+.|++++|.+. .+  ..+..+++|++|++++|.+..+ 
T Consensus         6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~-~l--~~l~~L~~L~~L~L~~N~I~~i-   79 (175)
T PF14580_consen    6 ANMIEQIAQYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQIT-KL--EGLPGLPRLKTLDLSNNRISSI-   79 (175)
T ss_dssp             --------------------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--
T ss_pred             cccccccccccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCc-cc--cCccChhhhhhcccCCCCCCcc-
Confidence            3344455566777789999999999864  23455 5789999999999887 33  3577789999999999999887 


Q ss_pred             Ccccc-cCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccccccc-ccccccCcccccEEEcc
Q 039778          114 VPKDY-RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVT-TTQGLCELVHLQDLYID  182 (459)
Q Consensus       114 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~  182 (459)
                       ...+ ..+|+|++|++++|++.+...+ ..+..+++|+.|++.+|++..... ....+..+|+|+.||-.
T Consensus        80 -~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   80 -SEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             -ccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence             3344 4689999999999998875443 456788999999999998875432 13346778899988743

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.14  E-value=6.5e-13  Score=114.44  Aligned_cols=110  Identities=22%  Similarity=0.251  Sum_probs=50.8

Q ss_pred             cCceEEcCCCCC-Cccccccc-ccCCCCcEEEccCCcceeeecccc-ccCCCCCcEEECccc-ccCCccCcccccCCCCC
Q 039778           49 MLESLDLSGNKF-NSSILSSL-TALSSLRKLNLMATGFKGTFDVQE-LDSLSNLEELDMSDN-EIDNLVVPKDYRGLRKL  124 (459)
Q Consensus        49 ~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L  124 (459)
                      .|+.|.+++|+- .......+ .+||++++|.+.+|...++..... -..|++|+.+++..| .+++.........+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            466666666652 22222222 356666666666655332222211 223566666666553 23332222233455666


Q ss_pred             cEEecCCCccCCCCcccccccCCCcccEEEccCC
Q 039778          125 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSN  158 (459)
Q Consensus       125 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (459)
                      ++++++.+.......+......+..++.+.++||
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC  252 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC  252 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence            6666665543332223333344455555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=5.1e-11  Score=98.58  Aligned_cols=202  Identities=20%  Similarity=0.234  Sum_probs=121.4

Q ss_pred             ccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCc
Q 039778          194 LANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNI  273 (459)
Q Consensus       194 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L  273 (459)
                      +.-+++|+++.++.|.-. .+ ......-|.|+.+.+.+..+......-+.........- ......+.......--..|
T Consensus       210 l~~f~~l~~~~~s~~~~~-~i-~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~-E~~t~~G~~~~~~dTWq~L  286 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTE-NI-VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGS-EPSTSNGSALVSADTWQEL  286 (490)
T ss_pred             hHHhhhhheeeeeccchh-he-eceeecCchhheeeeecccccccccccchhhhcCccCC-CCCccCCceEEecchHhhh
Confidence            344677888888877533 22 22233447788888877655433332222111111100 0111111111122223467


Q ss_pred             cEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecc
Q 039778          274 IALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS  353 (459)
Q Consensus       274 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  353 (459)
                      +++++++|.++ .+...+. ..|.++.|++++|.+....  .+..+++|+.|++++|.++ .+..+ ...+.+++.|.+.
T Consensus       287 telDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gw-h~KLGNIKtL~La  360 (490)
T KOG1259|consen  287 TELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGW-HLKLGNIKTLKLA  360 (490)
T ss_pred             hhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhh-HhhhcCEeeeehh
Confidence            88888888776 4444433 3788888888888876432  3677778888888888776 44333 2347788888888


Q ss_pred             ccccccccccccccccCCceEEccCCcccCC-CcccccccCCCcEEEccccccc
Q 039778          354 NNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD-IPESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       354 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~  406 (459)
                      .|.|.+  ..+++.+.+|..|++++|++... -...+.+++.|+.+.+.+|++.
T Consensus       361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            887754  44566777888888888886533 2245677788888888888877

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.06  E-value=2.2e-10  Score=113.55  Aligned_cols=131  Identities=27%  Similarity=0.283  Sum_probs=72.9

Q ss_pred             cCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcc-eeeeccccccCCCCCcEEECcccccCCccCcccccCCCCC
Q 039778           46 GMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGF-KGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKL  124 (459)
Q Consensus        46 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  124 (459)
                      .....+...+.++.+.. .+ .-..+++|++|-+.++.. ........|..++.|++||+++|.- ....|..++.+-+|
T Consensus       521 ~~~~~rr~s~~~~~~~~-~~-~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEH-IA-GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHL  597 (889)
T ss_pred             chhheeEEEEeccchhh-cc-CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhh
Confidence            33455555555555431 11 112344666666666541 1133333466677777777775432 11226667777777


Q ss_pred             cEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccc
Q 039778          125 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRN  184 (459)
Q Consensus       125 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  184 (459)
                      |+|+++++.+..   +|..++++..|.+|++..+......  ......+++|++|.+...
T Consensus       598 ryL~L~~t~I~~---LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  598 RYLDLSDTGISH---LPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             hcccccCCCccc---cchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeecc
Confidence            777777776665   6777777777777777665543222  223444667777766554

>PLN03150 hypothetical protein; Provisional

Probab=99.05  E-value=4.3e-10  Score=109.10  Aligned_cols=113  Identities=29%  Similarity=0.438  Sum_probs=80.7

Q ss_pred             ccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcC
Q 039778          346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP  425 (459)
Q Consensus       346 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  425 (459)
                      .++.|+|++|.+.+..+..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|++.+.+|..+.++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36677777777776677777777777777777777776777777777777777777777777777777777777777777


Q ss_pred             CCcccCCCchhhcCC-CcccEEeccCCcccccCC
Q 039778          426 DNHLEGPIPSEFCQL-DYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       426 ~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~p  458 (459)
                      +|.+.+.+|..+... ..+..+++.+|+..+..|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            777777777666543 355667777776666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=9.9e-12  Score=102.54  Aligned_cols=159  Identities=19%  Similarity=0.038  Sum_probs=81.8

Q ss_pred             CCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCC--CCCcccCCCCCcEEEccCCccccccchh-HHhcc
Q 039778          268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGS--IPSSFGDMNSLIYLDLSNNQLTGEIPEH-LAMGC  344 (459)
Q Consensus       268 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~  344 (459)
                      ..|.+|+.|.+.|..+.+.+...+.+ -.+|+.++++.+..-..  ..-.+.+|+.|..|+++.|....+.... +..-.
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            45556666666666666555555544 45566666665533221  1223455566666666666544333222 22224


Q ss_pred             cccceeecccccc--cc-ccccccccccCCceEEccCCc-ccCCCcccccccCCCcEEEccccccc-CCCcccccCcccc
Q 039778          345 FNLEYLLLSNNSL--QG-QLFSKKNNLTKLKRLNLDGNH-FIGDIPESLSNCSSLQGLYISDNDIT-GSIPTWIGNISFL  419 (459)
Q Consensus       345 ~~L~~L~l~~~~i--~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L  419 (459)
                      ++|+.|+++++.-  .. ........+|.|..|++++|. +.......|..++.|++|.+++|.-. .+..-.+.+.|+|
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL  365 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence            5666666666521  11 112223456667777776665 23333344556666777777776432 1111234456677


Q ss_pred             cEEEcCCC
Q 039778          420 DAIIMPDN  427 (459)
Q Consensus       420 ~~L~l~~~  427 (459)
                      .+|++.||
T Consensus       366 ~yLdv~g~  373 (419)
T KOG2120|consen  366 VYLDVFGC  373 (419)
T ss_pred             EEEEeccc
Confidence            77776666

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1e-11  Score=102.40  Aligned_cols=196  Identities=23%  Similarity=0.199  Sum_probs=125.0

Q ss_pred             cccEEEeccccccC---CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccc-cccCCCCCcEE
Q 039778           27 SLKNLSLAYNRLEG---SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQ-ELDSLSNLEEL  102 (459)
Q Consensus        27 ~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L  102 (459)
                      .|++|+++...++-   ...++.|++|+-|.+.+.++.+.....+++-.+|+.|+++.|......+.. .+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            58888888776553   345677888888888888887777777788888888888876544333222 35678888888


Q ss_pred             ECcccccCCccCcccccC-CCCCcEEecCCCccCCC-CcccccccCCCcccEEEccCCcccccccccccccCcccccEEE
Q 039778          103 DMSDNEIDNLVVPKDYRG-LRKLRFLDLSGLRIRDG-SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY  180 (459)
Q Consensus       103 ~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  180 (459)
                      +++.|......+.....+ -++|+.|++++++-.-. ..+.-...++|+|.+|+++.+...+. .....+.+++.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeee
Confidence            888887655433333333 35788888887643211 12333345788888888887765433 3333566778888888


Q ss_pred             ccccccccccchhc---cCCCCCcEEEcCCCcCcCcCCCCcccCCCccc
Q 039778          181 IDRNDFIGSLPWCL---ANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIE  226 (459)
Q Consensus       181 l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  226 (459)
                      ++.|.  ++.|..+   ...+.|.+|++.++--.+.. ......+++|+
T Consensus       345 lsRCY--~i~p~~~~~l~s~psl~yLdv~g~vsdt~m-el~~e~~~~lk  390 (419)
T KOG2120|consen  345 LSRCY--DIIPETLLELNSKPSLVYLDVFGCVSDTTM-ELLKEMLSHLK  390 (419)
T ss_pred             hhhhc--CCChHHeeeeccCcceEEEEeccccCchHH-HHHHHhCcccc
Confidence            88884  3344433   45688888888776432111 22234556554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.98  E-value=3.1e-10  Score=112.60  Aligned_cols=197  Identities=24%  Similarity=0.294  Sum_probs=123.3

Q ss_pred             cEEEccCCcccccchhhhcCCccccEEEecccc--ccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEcc
Q 039778            5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNR--LEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLM   80 (459)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   80 (459)
                      |...+.++.+. ..+... .++.|++|-+..+.  +..  ...|..++.|++||+++|.-...+|..++.+-+||+|+++
T Consensus       526 rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~  603 (889)
T KOG4658|consen  526 RRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS  603 (889)
T ss_pred             eEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence            45555555543 222222 35578888888774  333  3337889999999999877556888889999999999998


Q ss_pred             CCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcc
Q 039778           81 ATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF  160 (459)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (459)
                      ++++. .+|. .+.++..|.+|++..+...... +.....+++||+|.+.......+......+.++.+|+.+.......
T Consensus       604 ~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~  680 (889)
T KOG4658|consen  604 DTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV  680 (889)
T ss_pred             CCCcc-ccch-HHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence            88876 5554 7888888999988877644433 5556668899999887765443333444455666666665533322


Q ss_pred             cccccccccccCccccc----EEEccccccccccchhccCCCCCcEEEcCCCcCc
Q 039778          161 AKTVTTTQGLCELVHLQ----DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLT  211 (459)
Q Consensus       161 ~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  211 (459)
                          .....+..++.|.    .+.+.++.. ...+..+..+.+|+.|.+.+|...
T Consensus       681 ----~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  681 ----LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             ----HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCc
Confidence                1111222333333    223222221 233445667788899998888765

>PLN03150 hypothetical protein; Provisional

Probab=98.90  E-value=2.3e-09  Score=104.12  Aligned_cols=90  Identities=34%  Similarity=0.598  Sum_probs=86.0

Q ss_pred             CCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEecc
Q 039778          370 KLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS  449 (459)
Q Consensus       370 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  449 (459)
                      .++.|+|.+|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCC
Q 039778          450 KNNIAGSLPS  459 (459)
Q Consensus       450 ~~~~~~~~p~  459 (459)
                      +|+++|.+|+
T Consensus       499 ~N~l~g~iP~  508 (623)
T PLN03150        499 GNSLSGRVPA  508 (623)
T ss_pred             CCcccccCCh
Confidence            9999999994

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.90  E-value=1.6e-09  Score=100.55  Aligned_cols=178  Identities=35%  Similarity=0.532  Sum_probs=122.1

Q ss_pred             CCccEEEeccCccccccchhhhhcC-CCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVL-PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  349 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  349 (459)
                      ..++.+++.++.+. .++..... . ++|+.|+++.+.+... +..+..+++|+.|++..|++. .++.... ..++|+.
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~  190 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN  190 (394)
T ss_pred             cceeEEecCCcccc-cCcccccc-chhhcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence            56777788777777 55555443 4 3788888888877633 245677788888888888887 6665432 3778888


Q ss_pred             eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778          350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL  429 (459)
Q Consensus       350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  429 (459)
                      |++++|++... +........|+++.+++|++. ..+..+..+.++..+.+.+|++. ..+..+..+++++.|++++|.+
T Consensus       191 L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         191 LDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             eeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccc
Confidence            88888887743 222233445888888888644 23445666777777777777776 3356667777788888888888


Q ss_pred             cCCCchhhcCCCcccEEeccCCcccccCC
Q 039778          430 EGPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       430 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      + .++. +....+++.|+++++.++..+|
T Consensus       268 ~-~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         268 S-SISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             c-cccc-ccccCccCEEeccCccccccch
Confidence            7 4443 7777888888888887775443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.88  E-value=1.1e-10  Score=104.88  Aligned_cols=167  Identities=28%  Similarity=0.460  Sum_probs=75.3

Q ss_pred             EEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccc
Q 039778          276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN  355 (459)
Q Consensus       276 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  355 (459)
                      .+++.|.+. ++|..+.. +..|+.+.+..|.+. ..+..+..+..|+.++++.|++. .+|..++  .--|+.|-+++|
T Consensus        80 aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~sNN  153 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIVSNN  153 (722)
T ss_pred             hhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEEecC
Confidence            344444444 44444433 344444444444443 33344444445555555555544 4444443  123444445555


Q ss_pred             ccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCch
Q 039778          356 SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS  435 (459)
Q Consensus       356 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  435 (459)
                      +++ .+++.++..+.|..|+.+.|++. .++..+..+.+|+.|.+..|++. .+|+.+.. -.|..||++.|+++ .+|.
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecch
Confidence            444 23333334445555555555444 23333444444455555554444 33433332 23444455544444 4444


Q ss_pred             hhcCCCcccEEeccCCcc
Q 039778          436 EFCQLDYLEILDLSKNNI  453 (459)
Q Consensus       436 ~~~~~~~L~~L~l~~~~~  453 (459)
                      .|++++.|+.|-|.+|++
T Consensus       229 ~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             hhhhhhhheeeeeccCCC
Confidence            455555555555554444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=2.6e-10  Score=94.27  Aligned_cols=214  Identities=21%  Similarity=0.163  Sum_probs=115.7

Q ss_pred             CcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEE
Q 039778          124 LRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVL  203 (459)
Q Consensus       124 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  203 (459)
                      ++-+.+.++.+.........-..++.++.+++.+|.++++......+.++|.|+.|+++.|++...+...-....+|+++
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            34455556655543323222336677888888888887776666667788888888888887654333222345678888


Q ss_pred             EcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCcc
Q 039778          204 HVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKL  283 (459)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  283 (459)
                      -+.+..+.=.-....+..+|.++++.++.|........+..                     ....-+.++++...+|..
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c---------------------~e~~s~~v~tlh~~~c~~  185 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNC---------------------IEDWSTEVLTLHQLPCLE  185 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccc---------------------ccccchhhhhhhcCCcHH
Confidence            88877665222345566778888888887743210000000                     000123344444444432


Q ss_pred             ccccc--hhhhhcCCCccEEEeecCcCCCC-CCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccc
Q 039778          284 QGHIP--VEIGKVLPNLGFLSITFNAFNGS-IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG  359 (459)
Q Consensus       284 ~~~~~--~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~  359 (459)
                      . .+.  ..+...+|++..+.+..|.+.+. ....+..++.+--|+++.+++...........++.|..|.++++++.+
T Consensus       186 ~-~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  186 Q-LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             H-HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            2 100  11122356666666666655432 223344445555566666665533333344456666666666665543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=2.2e-09  Score=69.56  Aligned_cols=57  Identities=47%  Similarity=0.475  Sum_probs=22.0

Q ss_pred             CcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCC
Q 039778          322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGN  379 (459)
Q Consensus       322 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~  379 (459)
                      |++|++++|++. .++...+.++++|++|++++|.+....+.+|..+++|++|++++|
T Consensus         3 L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            333444444333 333333333334444444433333333333333333333333333

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.83  E-value=6.1e-09  Score=96.70  Aligned_cols=192  Identities=32%  Similarity=0.472  Sum_probs=137.7

Q ss_pred             EEEeccccc-cCCcccccCccCceEEcCCCCCCcccccccccCC-CCcEEEccCCcceeeeccccccCCCCCcEEECccc
Q 039778           30 NLSLAYNRL-EGSINIEGMNMLESLDLSGNKFNSSILSSLTALS-SLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDN  107 (459)
Q Consensus        30 ~L~l~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  107 (459)
                      .++...+.+ .+...+..++.++.|++.++.++ ..+....... +|+.|+++++.+. .++ ..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhh-hhhhccccccccccCCc
Confidence            567777766 44555666688888888888876 4555556664 8888888888776 222 25678888999999988


Q ss_pred             ccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccc
Q 039778          108 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFI  187 (459)
Q Consensus       108 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  187 (459)
                      .+.+.  +......+.|+.++++++.+..   ++..+.....|+++.+.+|.......   .+..+.++..+.+.++++.
T Consensus       174 ~l~~l--~~~~~~~~~L~~L~ls~N~i~~---l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         174 DLSDL--PKLLSNLSNLNNLDLSGNKISD---LPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             hhhhh--hhhhhhhhhhhheeccCCcccc---CchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCceee
Confidence            88887  4444578888888898888876   55555566668888888885333322   3566777777777777665


Q ss_pred             cccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceee
Q 039778          188 GSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ  236 (459)
Q Consensus       188 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  236 (459)
                      .. +..+..++.+++|+++++.+. .+..  +....+++.++++++.+.
T Consensus       246 ~~-~~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         246 DL-PESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ec-cchhccccccceecccccccc-cccc--ccccCccCEEeccCcccc
Confidence            32 455667778899999988877 3322  778888889988887664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=3.1e-09  Score=68.88  Aligned_cols=60  Identities=33%  Similarity=0.516  Sum_probs=34.5

Q ss_pred             CCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcc
Q 039778          394 SLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI  453 (459)
Q Consensus       394 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  453 (459)
                      +|++|++++|.+....+..|..+++|+.|++++|.+....++.|..+++|+.|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666665533334555566666666666666544445556666666666666653

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.81  E-value=3.3e-10  Score=101.92  Aligned_cols=153  Identities=25%  Similarity=0.356  Sum_probs=105.8

Q ss_pred             CcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccc
Q 039778          266 PTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF  345 (459)
Q Consensus       266 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  345 (459)
                      ....+..|+.++++.|.++ ..|..++.  -.|+.|.+++|+++ .++..++..+.|..|+.+.|++. .++..+. .+.
T Consensus       116 ~i~~L~~lt~l~ls~NqlS-~lp~~lC~--lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l~  189 (722)
T KOG0532|consen  116 AICNLEALTFLDLSSNQLS-HLPDGLCD--LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YLT  189 (722)
T ss_pred             hhhhhhHHHHhhhccchhh-cCChhhhc--CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hHH
Confidence            3455667778888888777 67776663  45788888888877 45566667778888888888776 6666654 377


Q ss_pred             ccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCccccc---CcccccEE
Q 039778          346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIG---NISFLDAI  422 (459)
Q Consensus       346 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L  422 (459)
                      +|+.|.+..|.+.. .++.+..+ .|..|+++.|++. .+|..|.+|..|++|.|++|++. ..|..+.   ...-.++|
T Consensus       190 slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL  265 (722)
T KOG0532|consen  190 SLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYL  265 (722)
T ss_pred             HHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeee
Confidence            88888888877763 44444444 3777888888777 56777888888888888888877 3333222   23445777


Q ss_pred             EcCCCc
Q 039778          423 IMPDNH  428 (459)
Q Consensus       423 ~l~~~~  428 (459)
                      +..-|+
T Consensus       266 ~~qA~q  271 (722)
T KOG0532|consen  266 STQACQ  271 (722)
T ss_pred             cchhcc
Confidence            777773

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=6.1e-09  Score=86.36  Aligned_cols=207  Identities=18%  Similarity=0.146  Sum_probs=128.2

Q ss_pred             ccEEEeccccccCCccc----ccCccCceEEcCCCCCCcc--cccccccCCCCcEEEccCCcceeeeccccc-cCCCCCc
Q 039778           28 LKNLSLAYNRLEGSINI----EGMNMLESLDLSGNKFNSS--ILSSLTALSSLRKLNLMATGFKGTFDVQEL-DSLSNLE  100 (459)
Q Consensus        28 L~~L~l~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~  100 (459)
                      +.-+.+.++.+....++    ..+.+++++|+.+|.+++.  ....+.++|+|+.|+++.|.....+.  .. ....+|+
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~  124 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLR  124 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceE
Confidence            33555556655544433    2467888889988888752  34456788999999998887765443  33 3567888


Q ss_pred             EEECcccccCCccCcccccCCCCCcEEecCCCccCCCCccccccc-CCCcccEEEccCCcccccccccccccCcccccEE
Q 039778          101 ELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIG-SFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDL  179 (459)
Q Consensus       101 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  179 (459)
                      +|-+.++.+.-......+..+|.++++.++.|.+.........+. -.+.++++.+.+|....+........-.+++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            888888877655556677788888888888774432211112222 1235666666666544333322223345677777


Q ss_pred             Eccccccccccc-hhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceee
Q 039778          180 YIDRNDFIGSLP-WCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ  236 (459)
Q Consensus       180 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  236 (459)
                      .+..|++.+... ..+..++.+-.|.+..+++.+......+.+++.|..|.+..+++.
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            777776644222 223345566667777777665455566777888888888777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.60  E-value=7.3e-09  Score=100.28  Aligned_cols=200  Identities=23%  Similarity=0.264  Sum_probs=119.9

Q ss_pred             CCcEEEccCCcccccchhhhcCCccccEEEeccccccC-----C--cccc----------cCccCceEEcCCCC-CCccc
Q 039778            3 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-----S--INIE----------GMNMLESLDLSGNK-FNSSI   64 (459)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~--~~~~----------~l~~L~~L~l~~~~-~~~~~   64 (459)
                      +++.+++.+..+.....+.+.... |+++.+.+-....     .  .++.          .-.+|++|++++.. +...-
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W  139 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW  139 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence            456666766666655555555544 8888887654221     1  0110          12578899998865 22222


Q ss_pred             ccccc-cCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCccccc
Q 039778           65 LSSLT-ALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS  143 (459)
Q Consensus        65 ~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  143 (459)
                      +..++ .+|+|++|.+.+..+...--.....++++|..||++++++..+   .+++++++|+.|.+.+-.+.....+ ..
T Consensus       140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe~e~~~~l-~~  215 (699)
T KOG3665|consen  140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLEFESYQDL-ID  215 (699)
T ss_pred             HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccCCCCCchhhH-HH
Confidence            22333 6799999998887664322233566789999999999988886   6788888888888888777653223 34


Q ss_pred             ccCCCcccEEEccCCcccccccc----cccccCcccccEEEccccccccccchh-ccCCCCCcEEEcCC
Q 039778          144 IGSFPSLKTLYLKSNNFAKTVTT----TQGLCELVHLQDLYIDRNDFIGSLPWC-LANLTSLRVLHVPD  207 (459)
Q Consensus       144 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~  207 (459)
                      +.++++|+.||++..........    .+--..+|+|+.|+.++..+.+..-.. +...++|+.+...+
T Consensus       216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~  284 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD  284 (699)
T ss_pred             HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence            55788889998887665433211    111123566666666665544322222 22345555544433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.53  E-value=1.4e-08  Score=94.42  Aligned_cols=193  Identities=35%  Similarity=0.440  Sum_probs=120.2

Q ss_pred             CCcEEEccCCcccccchhhhcCCccccEEEeccccccCCcc-cccCccCceEEcCCCCCCcccccccccCCCCcEEEccC
Q 039778            3 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN-IEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMA   81 (459)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   81 (459)
                      .+..+++..+.+.. ....+..+++|+.+++.++.+..... +..+++|++|++++|.|++  ...+..++.|+.|++.+
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSG  149 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc--ccchhhccchhhheecc
Confidence            34455555555542 23335667888888888888877777 7788888888888888754  33466667788888888


Q ss_pred             CcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccc
Q 039778           82 TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA  161 (459)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (459)
                      |.+..   ...+..++.|+.++++++.+..+.... ...+.+++.+.+.++.+...    ..+..+..+..+++..+.+.
T Consensus       150 N~i~~---~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i----~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  150 NLISD---ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI----EGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             Ccchh---ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc----cchHHHHHHHHhhcccccce
Confidence            87762   234555788888888888877763101 46777888888888776543    22233344444455555554


Q ss_pred             ccccccccccCcc--cccEEEccccccccccchhccCCCCCcEEEcCCCcCc
Q 039778          162 KTVTTTQGLCELV--HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLT  211 (459)
Q Consensus       162 ~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  211 (459)
                      .....    ....  +|+.+.+.++++.... ..+..+..+..+++.++.+.
T Consensus       222 ~~~~l----~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  222 KLEGL----NELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             eccCc----ccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccc
Confidence            33222    1222  3677777776655321 23445566666666666544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.52  E-value=8.3e-09  Score=95.85  Aligned_cols=197  Identities=30%  Similarity=0.359  Sum_probs=142.3

Q ss_pred             cCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcE
Q 039778           23 AGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEE  101 (459)
Q Consensus        23 ~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  101 (459)
                      ..+..++.+++..+.+.. ...+..+.+|+.|++.++.+.. ....+..+++|++|+++++.+..   ...+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~---i~~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK---LEGLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccc---ccchhhccchhh
Confidence            456777788888887776 3448889999999999999863 33337889999999999998873   235667788999


Q ss_pred             EECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEc
Q 039778          102 LDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI  181 (459)
Q Consensus       102 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  181 (459)
                      |++++|.+..+   ..+..++.|+.+++.++++...... . ...+.+++.+.+.++.+.....    +..+..+..+++
T Consensus       145 L~l~~N~i~~~---~~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~----~~~~~~l~~~~l  215 (414)
T KOG0531|consen  145 LNLSGNLISDI---SGLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEG----LDLLKKLVLLSL  215 (414)
T ss_pred             heeccCcchhc---cCCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccc----hHHHHHHHHhhc
Confidence            99999999886   4566699999999999998764221 1 4678899999999988764432    233444555577


Q ss_pred             cccccccccchhccCCC--CCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceee
Q 039778          182 DRNDFIGSLPWCLANLT--SLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ  236 (459)
Q Consensus       182 ~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  236 (459)
                      .++.+....+  +....  +|+.++++++.+.. . ...+..+..+..+++..+.+.
T Consensus       216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~-~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  216 LDNKISKLEG--LNELVMLHLRELYLSGNRISR-S-PEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ccccceeccC--cccchhHHHHHHhcccCcccc-c-cccccccccccccchhhcccc
Confidence            7776654332  12222  38899999988762 2 145667778888888877654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.47  E-value=2e-08  Score=82.28  Aligned_cols=235  Identities=18%  Similarity=0.170  Sum_probs=151.0

Q ss_pred             CCCcEEEccCCcccccchhhh----cCCccccEEEecccccc---C---------CcccccCccCceEEcCCCCCCcccc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSL----AGLSSLKNLSLAYNRLE---G---------SINIEGMNMLESLDLSGNKFNSSIL   65 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~---~---------~~~~~~l~~L~~L~l~~~~~~~~~~   65 (459)
                      ..+..++||+|.+.....+.+    ++-++|+..+++.-...   +         ..++.+||+|+.+++|+|.+....+
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            457789999998876655554    44578888888754322   1         2246689999999999998876655


Q ss_pred             cc----cccCCCCcEEEccCCcceeeecc------------ccccCCCCCcEEECcccccCCccCc---ccccCCCCCcE
Q 039778           66 SS----LTALSSLRKLNLMATGFKGTFDV------------QELDSLSNLEELDMSDNEIDNLVVP---KDYRGLRKLRF  126 (459)
Q Consensus        66 ~~----~~~l~~L~~L~l~~~~~~~~~~~------------~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~  126 (459)
                      ..    +++-..|.+|.+.+|+.......            +...+-|.|+++++..|++..-.-.   ..+..-..|+.
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE  189 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence            54    45678999999999977532111            1233457899999998887554211   11222257888


Q ss_pred             EecCCCccCCCCc---ccccccCCCcccEEEccCCccccccc--ccccccCcccccEEEccccccccccch----hcc--
Q 039778          127 LDLSGLRIRDGSK---VLHSIGSFPSLKTLYLKSNNFAKTVT--TTQGLCELVHLQDLYIDRNDFIGSLPW----CLA--  195 (459)
Q Consensus       127 L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~--  195 (459)
                      +.+..|.+.....   ....+..+.+|+.|++..|.++...+  ....+..++.|++|.+.+|-++.....    .|.  
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~  269 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK  269 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhh
Confidence            8888887754311   12234578889999999888764322  233466777889999988865543322    122  


Q ss_pred             CCCCCcEEEcCCCcCcCcCCCC------cccCCCcccEEEeecceee
Q 039778          196 NLTSLRVLHVPDNQLTGNLSSS------PLMHLTSIEVLLLSNNHFQ  236 (459)
Q Consensus       196 ~~~~L~~L~l~~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~  236 (459)
                      ..++|..|.+.++...+.+...      .-.++|-|..+.+.+|.+.
T Consensus       270 ~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         270 FVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             cCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            2577888888777654332111      1135566777777777664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.38  E-value=7e-07  Score=70.16  Aligned_cols=108  Identities=23%  Similarity=0.250  Sum_probs=51.9

Q ss_pred             cccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcc
Q 039778           27 SLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD  106 (459)
Q Consensus        27 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  106 (459)
                      +...++|++|.+.....+..+++|.+|.+.+|+|+.+.+..-..+++                         |++|.+.+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~-------------------------l~~L~Ltn   97 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPN-------------------------LKTLILTN   97 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccc-------------------------cceEEecC
Confidence            34444555554444444555555555555555554444433334444                         45555555


Q ss_pred             cccCCccCcccccCCCCCcEEecCCCccCCCCcccc-cccCCCcccEEEccCCc
Q 039778          107 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH-SIGSFPSLKTLYLKSNN  159 (459)
Q Consensus       107 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~  159 (459)
                      |.+..+..-.-+..||+|++|.+-+|.+.+...... .+..+|+|+.||+++..
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            444444333444555555555555554443222211 34456666666665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=6.8e-09  Score=96.46  Aligned_cols=186  Identities=24%  Similarity=0.253  Sum_probs=119.8

Q ss_pred             ccCCcccccCccCceEEcCCCCCCcccccccccC-CCCcEEEccCCcce-ee-ec--ccccc---CCCCCcEEECccccc
Q 039778           38 LEGSINIEGMNMLESLDLSGNKFNSSILSSLTAL-SSLRKLNLMATGFK-GT-FD--VQELD---SLSNLEELDMSDNEI  109 (459)
Q Consensus        38 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~-~~-~~--~~~~~---~~~~L~~L~l~~~~~  109 (459)
                      ..++..+..+..|++|.+.+|.+..  ...+..+ ..|++|...+.--. .. +.  ...+.   -...|.+.+++.|.+
T Consensus        99 pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen   99 PTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL  176 (1096)
T ss_pred             CCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH
Confidence            3345667788899999999998753  2222222 24455544322000 00 00  00111   134677788888877


Q ss_pred             CCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccc
Q 039778          110 DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGS  189 (459)
Q Consensus       110 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  189 (459)
                      ..+  ..++.-++.++.|++++|++...    ..+..+++|++|++++|.+.......  ...+ +|+.|.+.+|.++..
T Consensus       177 ~~m--D~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc-~L~~L~lrnN~l~tL  247 (1096)
T KOG1859|consen  177 VLM--DESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQLS--MVGC-KLQLLNLRNNALTTL  247 (1096)
T ss_pred             HhH--HHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhccccccc--hhhh-hheeeeecccHHHhh
Confidence            666  56778888899999999888763    26778888999999988876655432  2233 388888888876532


Q ss_pred             cchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceee
Q 039778          190 LPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ  236 (459)
Q Consensus       190 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  236 (459)
                        ..+.++++|+.||+++|-+.+.-....+..+..|++|++.+|++.
T Consensus       248 --~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  248 --RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             --hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence              345677888888888887664434455677778888888888764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=2.5e-07  Score=76.00  Aligned_cols=185  Identities=20%  Similarity=0.221  Sum_probs=127.3

Q ss_pred             CCCccEEEeccCccccccchhhhhcCC---CccEEEeecCcCC---C-------CCCCcccCCCCCcEEEccCCcccccc
Q 039778          270 RKNIIALDISYNKLQGHIPVEIGKVLP---NLGFLSITFNAFN---G-------SIPSSFGDMNSLIYLDLSNNQLTGEI  336 (459)
Q Consensus       270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~---~L~~L~L~~~~~~---~-------~~~~~~~~~~~L~~L~l~~~~~~~~~  336 (459)
                      ...++.++++||.+..+-..+++..+.   +|+..+++.-...   +       .....+.+||.|+..++++|.+.-..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            567889999999988766666665444   4555555432111   1       12345678899999999999876455


Q ss_pred             chh---HHhcccccceeeccccccccc----cccc---------cccccCCceEEccCCcccCCC----cccccccCCCc
Q 039778          337 PEH---LAMGCFNLEYLLLSNNSLQGQ----LFSK---------KNNLTKLKRLNLDGNHFIGDI----PESLSNCSSLQ  396 (459)
Q Consensus       337 ~~~---~~~~~~~L~~L~l~~~~i~~~----~~~~---------~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~  396 (459)
                      |..   +..+.+.|++|.+++|.+.-.    +..+         ....|.|+++....|++.+-.    +..+.....|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            433   334578899999999977522    1111         134588999999999876332    22334446899


Q ss_pred             EEEcccccccCCCc-----ccccCcccccEEEcCCCcccCC----CchhhcCCCcccEEeccCCccc
Q 039778          397 GLYISDNDITGSIP-----TWIGNISFLDAIIMPDNHLEGP----IPSEFCQLDYLEILDLSKNNIA  454 (459)
Q Consensus       397 ~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  454 (459)
                      ++.+..|.|.....     ..+..+.+|+.|+|.+|-++..    +...++.++.|+.|.+.+|-++
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            99999998875422     3455789999999999977643    3345678888999999999765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.28  E-value=5.1e-07  Score=87.74  Aligned_cols=131  Identities=29%  Similarity=0.377  Sum_probs=76.9

Q ss_pred             CCcEEEccCCc-ccccch-hhhcCCccccEEEeccccccCC---cccccCccCceEEcCCCCCCcccccccccCCCCcEE
Q 039778            3 NLKFLDLSHNS-FNNSVL-SSLAGLSSLKNLSLAYNRLEGS---INIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKL   77 (459)
Q Consensus         3 ~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   77 (459)
                      +|+.|+++|.. +...-+ ..-..+|.|++|.+++-.+...   ....++|+|..||+++++++..  ..++++++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            56777777653 221222 2223467777777777655432   2245677777777777777543  566777777777


Q ss_pred             EccCCcceeeeccccccCCCCCcEEECcccccCCcc-C----cccccCCCCCcEEecCCCccC
Q 039778           78 NLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLV-V----PKDYRGLRKLRFLDLSGLRIR  135 (459)
Q Consensus        78 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~----~~~~~~~~~L~~L~l~~~~~~  135 (459)
                      .+.+-++........+..+++|++||+|........ .    -+.-..+|+||.|+.+++.+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            777766665455556667777777777765443321 0    011223566666666665544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.22  E-value=1.1e-07  Score=69.66  Aligned_cols=134  Identities=19%  Similarity=0.161  Sum_probs=83.6

Q ss_pred             CccEEEeecCcCCCC--CCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceE
Q 039778          297 NLGFLSITFNAFNGS--IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL  374 (459)
Q Consensus       297 ~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  374 (459)
                      .+..++|+.|.+...  ....+.....|+..++++|.+. ..|..+...+|.++.+++.+|+|.+. |+.+..+|.|+.+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhc
Confidence            355667777766522  1222344456777788888887 77777777777888888888888754 3447788888888


Q ss_pred             EccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCc
Q 039778          375 NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIP  434 (459)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  434 (459)
                      +++.|++. ..|..+..+.++..|+..+|.+. ++|..+..........+.+..+.+.-+
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence            88888876 33444545777777888777766 555443322222222344445544333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.21  E-value=1.1e-06  Score=51.92  Aligned_cols=36  Identities=28%  Similarity=0.534  Sum_probs=16.2

Q ss_pred             CCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          394 SLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       394 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      +|++|++++|++. .+|+.+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3445555555444 33333444555555555555444

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.14  E-value=5.2e-06  Score=65.38  Aligned_cols=109  Identities=21%  Similarity=0.279  Sum_probs=83.4

Q ss_pred             CCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCccc
Q 039778           72 SSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLK  151 (459)
Q Consensus        72 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  151 (459)
                      .....++++.+.+.   ....+..+++|.+|.+++|+|+.+. +.-...+++|+.|.+.+|.+.....+ .-+..||+|+
T Consensus        42 d~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLE  116 (233)
T ss_pred             cccceecccccchh---hcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhc-chhccCCccc
Confidence            45667778777665   2235778899999999999999885 44555678999999999988765333 3466899999


Q ss_pred             EEEccCCcccccccc-cccccCcccccEEEccccc
Q 039778          152 TLYLKSNNFAKTVTT-TQGLCELVHLQDLYIDRND  185 (459)
Q Consensus       152 ~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~  185 (459)
                      .|.+-+|++...... ...++.+++|+.|+..+-.
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            999999998754432 3457889999999988753

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=1.5e-07  Score=68.97  Aligned_cols=83  Identities=25%  Similarity=0.323  Sum_probs=41.1

Q ss_pred             ccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcC
Q 039778          346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP  425 (459)
Q Consensus       346 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  425 (459)
                      .|+..++++|.+..........+|.++.+++.+|.+. .+|..+..++.|+.|+++.|++. ..|..+..+.++..|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            4444555555554322222233345555555555554 33444555555555555555555 444444445555555555


Q ss_pred             CCccc
Q 039778          426 DNHLE  430 (459)
Q Consensus       426 ~~~~~  430 (459)
                      ++...
T Consensus       132 ~na~~  136 (177)
T KOG4579|consen  132 ENARA  136 (177)
T ss_pred             CCccc
Confidence            55444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.06  E-value=7.8e-08  Score=89.67  Aligned_cols=122  Identities=26%  Similarity=0.262  Sum_probs=63.8

Q ss_pred             EEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCccee
Q 039778            7 LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKG   86 (459)
Q Consensus         7 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   86 (459)
                      .+++-|.+. ...+++.-++.|++|+|+.|++.+-.++..|++|++|||+.|.+.....-.+..|. |+.|.+.+|....
T Consensus       169 a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t  246 (1096)
T KOG1859|consen  169 ASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT  246 (1096)
T ss_pred             hhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh
Confidence            334444433 33444444556666666666665555566666666666666665433333344444 6666666655441


Q ss_pred             eeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCc
Q 039778           87 TFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR  133 (459)
Q Consensus        87 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  133 (459)
                         ...+.++.+|+.||++.|-+.+...-..+..+..|+.|.+.+|-
T Consensus       247 ---L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  247 ---LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ---hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence               22445556666666666655444333334445555555555553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=9.1e-06  Score=47.93  Aligned_cols=39  Identities=33%  Similarity=0.467  Sum_probs=23.2

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccCC
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGS   41 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   41 (459)
                      ++|++|++++|.+++. +..+..+++|+.|++++|.+.+.
T Consensus         1 ~~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCC
Confidence            4667777777776643 33466677777777777665543

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.98  E-value=2.6e-05  Score=70.05  Aligned_cols=132  Identities=17%  Similarity=0.196  Sum_probs=73.6

Q ss_pred             CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccc-ccccccccccccccCCce
Q 039778          295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN-SLQGQLFSKKNNLTKLKR  373 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~  373 (459)
                      +.+++.|++++|.+... + .  -..+|+.|.+.+|.-...+|..+   .++|++|++++| .+. .++      ++|+.
T Consensus        51 ~~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sLe~  116 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ESVRS  116 (426)
T ss_pred             hcCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cccce
Confidence            68999999999977633 3 1  22479999999974333666543   468999999998 443 222      35777


Q ss_pred             EEccCCcccC--CCcccccccCCCcEEEccccc-ccC-CCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEecc
Q 039778          374 LNLDGNHFIG--DIPESLSNCSSLQGLYISDND-ITG-SIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS  449 (459)
Q Consensus       374 L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  449 (459)
                      |++.++....  .+|      ++|+.|.+.++. ... .++..  -.++|+.|++++|... ..|+.+.  .+|+.|+++
T Consensus       117 L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        117 LEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             EEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            7776554321  122      235555553321 110 01100  0145666666666544 3343322  355556655


Q ss_pred             CC
Q 039778          450 KN  451 (459)
Q Consensus       450 ~~  451 (459)
                      .+
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            54

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.98  E-value=1.3e-05  Score=61.43  Aligned_cols=82  Identities=21%  Similarity=0.308  Sum_probs=26.9

Q ss_pred             ccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCC
Q 039778          316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL  395 (459)
Q Consensus       316 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  395 (459)
                      |.++++|+.+.+.. .+. .+....+.++++|+.+.+..+ +......+|..+++|+.+.+.+ .+......+|..+.+|
T Consensus         8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            33344444444432 222 334444444444444444432 3322333344444444444433 2221222333444444


Q ss_pred             cEEEcc
Q 039778          396 QGLYIS  401 (459)
Q Consensus       396 ~~L~l~  401 (459)
                      +.+.+.
T Consensus        84 ~~i~~~   89 (129)
T PF13306_consen   84 KNIDIP   89 (129)
T ss_dssp             CEEEET
T ss_pred             cccccC
Confidence            444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.94  E-value=2.1e-05  Score=60.14  Aligned_cols=127  Identities=24%  Similarity=0.261  Sum_probs=70.0

Q ss_pred             cchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccc
Q 039778          287 IPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKN  366 (459)
Q Consensus       287 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~  366 (459)
                      ++...+..+.+|+.+.+.. .+.......|.++++|+.+.+.++ +. .+....+.++++++.+.+.+ .+......+|.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence            3445555677889888874 455566777888888999999875 55 77778888888899999976 44444556777


Q ss_pred             cccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCccccc
Q 039778          367 NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLD  420 (459)
Q Consensus       367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  420 (459)
                      .+++|+.+.+..+ +.......+.++ +|+.+.+.. .+.......|.++++|+
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            8889999999765 554555667776 888888876 44434445677776653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.87  E-value=4.7e-06  Score=68.60  Aligned_cols=89  Identities=25%  Similarity=0.313  Sum_probs=52.3

Q ss_pred             cCCccccEEEeccccccCCcccccCccCceEEcCCC--CCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCc
Q 039778           23 AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGN--KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLE  100 (459)
Q Consensus        23 ~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  100 (459)
                      ..+..|+.+++.+..++....+..+++|+.|.++.|  ++...+......+|+|++|++++|++........+..+.+|.
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            345566666666666666666777777777777777  444334444445577777777776665322223344455566


Q ss_pred             EEECcccccCC
Q 039778          101 ELDMSDNEIDN  111 (459)
Q Consensus       101 ~L~l~~~~~~~  111 (459)
                      .|++.+|..+.
T Consensus       120 ~Ldl~n~~~~~  130 (260)
T KOG2739|consen  120 SLDLFNCSVTN  130 (260)
T ss_pred             hhhcccCCccc
Confidence            66666655443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=0.0001  Score=66.23  Aligned_cols=134  Identities=16%  Similarity=0.189  Sum_probs=79.1

Q ss_pred             CCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCC-ccccccchhHHhccccc
Q 039778          269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN-QLTGEIPEHLAMGCFNL  347 (459)
Q Consensus       269 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L  347 (459)
                      .+..++.|++++|.+. .+|.    ..++|+.|.+++|.-....+..+  .++|+.|++.+| .+. .+       .++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL-------P~sL  114 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL-------PESV  114 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc-------cccc
Confidence            3567888888888766 5662    24578888888765544444433  257888888887 443 33       3467


Q ss_pred             ceeeccccccccccccccccc-cCCceEEccCCccc--CCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEc
Q 039778          348 EYLLLSNNSLQGQLFSKKNNL-TKLKRLNLDGNHFI--GDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIM  424 (459)
Q Consensus       348 ~~L~l~~~~i~~~~~~~~~~~-~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  424 (459)
                      +.|++..+....     +..+ ++|+.|.+.++...  ...+..++  ++|++|.+.+|... .+|+.+-  .+|+.|++
T Consensus       115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             ceEEeCCCCCcc-----cccCcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            777776554331     1222 36777777543311  11121122  57888888887765 3444332  57777777


Q ss_pred             CCC
Q 039778          425 PDN  427 (459)
Q Consensus       425 ~~~  427 (459)
                      +.+
T Consensus       185 s~n  187 (426)
T PRK15386        185 HIE  187 (426)
T ss_pred             ccc
Confidence            665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.85  E-value=1.4e-06  Score=83.58  Aligned_cols=130  Identities=28%  Similarity=0.267  Sum_probs=59.2

Q ss_pred             CccccEEEecccc-ccC---CcccccCccCceEEcCCC-C-CCccc---ccccccCCCCcEEEccCCcceeeeccccccC
Q 039778           25 LSSLKNLSLAYNR-LEG---SINIEGMNMLESLDLSGN-K-FNSSI---LSSLTALSSLRKLNLMATGFKGTFDVQELDS   95 (459)
Q Consensus        25 ~~~L~~L~l~~~~-~~~---~~~~~~l~~L~~L~l~~~-~-~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   95 (459)
                      ++.|+.+.+.++. +.+   ......++.|++|+++++ . +....   ......|++|+.|++.++....+.....+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4556666665553 222   122344556666666552 1 11111   1122345556666665555222333333332


Q ss_pred             -CCCCcEEECcccc-cCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEE
Q 039778           96 -LSNLEELDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY  154 (459)
Q Consensus        96 -~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  154 (459)
                       |++|++|.+.+|. +++..+......++.|++|+++.+....+..+.....++++++.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~  327 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK  327 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence             5566666655554 4444434444455566666666554433322333333455444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.73  E-value=2.4e-06  Score=82.07  Aligned_cols=116  Identities=19%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             cCccCceEEcCCCC-CCcc-cccccccCCCCcEEEccCC-cceeeec---cccccCCCCCcEEECcccc-cCCccCcccc
Q 039778           46 GMNMLESLDLSGNK-FNSS-ILSSLTALSSLRKLNLMAT-GFKGTFD---VQELDSLSNLEELDMSDNE-IDNLVVPKDY  118 (459)
Q Consensus        46 ~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~~---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~  118 (459)
                      .++.|+.+.+.++. +++. .......+++|+.|+++++ ......+   ......+++|+.++++.+. +++..+....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            36677777777764 3322 2344556777777777652 1111111   1123345677777777666 4444433333


Q ss_pred             cCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccc
Q 039778          119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA  161 (459)
Q Consensus       119 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (459)
                      ..+++|++|.+.++....+..+......++.|++|+++++...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            3466777777655552222334444556667777777766553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=1.3e-06  Score=72.11  Aligned_cols=103  Identities=28%  Similarity=0.263  Sum_probs=70.0

Q ss_pred             CccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEEC
Q 039778           25 LSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDM  104 (459)
Q Consensus        25 ~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  104 (459)
                      +.+.+.|+++||.+.+......|+.|++|.|+-|+|+  ....+..|++|+.|+|..|.+.+-.....+.++++|++|.+
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIs--sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKIS--SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccc--cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            4577888888888777777778888888888888875  34557788888888888777764334445667777777777


Q ss_pred             cccccCCccCc----ccccCCCCCcEEec
Q 039778          105 SDNEIDNLVVP----KDYRGLRKLRFLDL  129 (459)
Q Consensus       105 ~~~~~~~~~~~----~~~~~~~~L~~L~l  129 (459)
                      ..|.......+    ..+.-+|+|++|+=
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhccC
Confidence            66654332211    12456666766643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=2.6e-06  Score=70.43  Aligned_cols=98  Identities=24%  Similarity=0.227  Sum_probs=60.4

Q ss_pred             CCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCc-ccccccCCCcEEE
Q 039778          321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIP-ESLSNCSSLQGLY  399 (459)
Q Consensus       321 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~  399 (459)
                      +.+.|+++||.++ .+  .+...++.|+.|.|+-|+|+.  ...+..|++|++|+|..|.+.+... ..+.++++|+.|+
T Consensus        20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCcc-HH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            5566677777766 32  334457777777777777764  4455667777777777776653321 2345677777777


Q ss_pred             cccccccCCCcc-----cccCcccccEEE
Q 039778          400 ISDNDITGSIPT-----WIGNISFLDAII  423 (459)
Q Consensus       400 l~~~~~~~~~~~-----~~~~~~~L~~L~  423 (459)
                      |..|+=.+..+.     .+.-+|+|++|+
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            777765544442     334466776653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.41  E-value=8.3e-05  Score=61.42  Aligned_cols=106  Identities=24%  Similarity=0.235  Sum_probs=69.6

Q ss_pred             hcccccceeeccccccccccccccccccCCceEEccCC--cccCCCcccccccCCCcEEEcccccccC-CCcccccCccc
Q 039778          342 MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGN--HFIGDIPESLSNCSSLQGLYISDNDITG-SIPTWIGNISF  418 (459)
Q Consensus       342 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~  418 (459)
                      ..+..|+.+.+.++.++.  ...|..+|+|++|.++.|  .+....+.....+++|+++++++|++.. .-...+..+.+
T Consensus        40 d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            346677888777776654  456667788899999888  4444444445566888999999888762 11123445677


Q ss_pred             ccEEEcCCCcccCCCc---hhhcCCCcccEEecc
Q 039778          419 LDAIIMPDNHLEGPIP---SEFCQLDYLEILDLS  449 (459)
Q Consensus       419 L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~  449 (459)
                      |..|++.+|..++...   ..|.-+++|..|+-.
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            8888888887765321   234566777666543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=5.8e-05  Score=59.69  Aligned_cols=81  Identities=31%  Similarity=0.352  Sum_probs=64.0

Q ss_pred             CcEEEccCCcccccchhhhcCCccccEEEeccccccCCccc---c-cCccCceEEcCCCC-CCcccccccccCCCCcEEE
Q 039778            4 LKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI---E-GMNMLESLDLSGNK-FNSSILSSLTALSSLRKLN   78 (459)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~-~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~   78 (459)
                      ++.+|-+++.|.....+-+..++.++.|.+.+|.-.+...+   . -.++|++|++++|. |++.....+.++++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            57788889999888888888999999999998865543222   2 45789999999885 8888888888899999888


Q ss_pred             ccCCcc
Q 039778           79 LMATGF   84 (459)
Q Consensus        79 l~~~~~   84 (459)
                      +..-+.
T Consensus       183 l~~l~~  188 (221)
T KOG3864|consen  183 LYDLPY  188 (221)
T ss_pred             hcCchh
Confidence            865443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.00039  Score=55.19  Aligned_cols=76  Identities=21%  Similarity=0.106  Sum_probs=32.9

Q ss_pred             ecCcCCCCCCCcccCCCCCcEEEccCCc-cccccchhHHhcccccceeecccc-ccccccccccccccCCceEEccCC
Q 039778          304 TFNAFNGSIPSSFGDMNSLIYLDLSNNQ-LTGEIPEHLAMGCFNLEYLLLSNN-SLQGQLFSKKNNLTKLKRLNLDGN  379 (459)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~  379 (459)
                      +++.+..+....+..++.++.|.+.+|. +.+...+.+....++|+.|++++| +|++.....+..+++|+.|.+.+-
T Consensus       109 sds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  109 SDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             CCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence            3333333333444444555555555542 222222223333445555555544 344444444444445555444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.77  E-value=0.0053  Score=27.61  Aligned_cols=16  Identities=56%  Similarity=0.821  Sum_probs=7.3

Q ss_pred             cccEEeccCCcccccCC
Q 039778          442 YLEILDLSKNNIAGSLP  458 (459)
Q Consensus       442 ~L~~L~l~~~~~~~~~p  458 (459)
                      +|+.|+|++|+++ ++|
T Consensus         2 ~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             T-SEEEETSS--S-SE-
T ss_pred             ccCEEECCCCCCC-CCc
Confidence            4666666666654 544

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.58  E-value=0.0048  Score=30.00  Aligned_cols=17  Identities=65%  Similarity=0.884  Sum_probs=12.6

Q ss_pred             cccEEeccCCcccccCCC
Q 039778          442 YLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       442 ~L~~L~l~~~~~~~~~p~  459 (459)
                      +|+.|++++|+++ ++|+
T Consensus         1 ~L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             TESEEEETSSEES-EEGT
T ss_pred             CccEEECCCCcCE-eCCh
Confidence            4678888888777 7774

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.09  E-value=0.011  Score=28.77  Aligned_cols=17  Identities=35%  Similarity=0.591  Sum_probs=7.8

Q ss_pred             ccEEEcCCCcccCCCchh
Q 039778          419 LDAIIMPDNHLEGPIPSE  436 (459)
Q Consensus       419 L~~L~l~~~~~~~~~~~~  436 (459)
                      |++|+|++|+++ .+|..
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            444445555444 44433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.26  E-value=0.00048  Score=64.47  Aligned_cols=183  Identities=23%  Similarity=0.223  Sum_probs=108.6

Q ss_pred             ccEEEeccCccccccchhhhh---cCCCccEEEeecCcCCCCCC----CcccCC-CCCcEEEccCCccccccchhH---H
Q 039778          273 IIALDISYNKLQGHIPVEIGK---VLPNLGFLSITFNAFNGSIP----SSFGDM-NSLIYLDLSNNQLTGEIPEHL---A  341 (459)
Q Consensus       273 L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~~~~~~---~  341 (459)
                      +..+.+.+|.+.+.....+..   ..+.|+.+++++|.+.+...    ..+... ..++.|++..|.+++.....+   .
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            666777777766554444433   35677788888887774322    222332 456667777777664433222   2


Q ss_pred             hcccccceeeccccccccc----cccccc----cccCCceEEccCCcccCCC----cccccccCC-CcEEEcccccccCC
Q 039778          342 MGCFNLEYLLLSNNSLQGQ----LFSKKN----NLTKLKRLNLDGNHFIGDI----PESLSNCSS-LQGLYISDNDITGS  408 (459)
Q Consensus       342 ~~~~~L~~L~l~~~~i~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~~~~~~~  408 (459)
                      .....++.++++.|.+...    ...++.    ...++++|.+..|.++...    ...+...++ +.++++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            2366777888888876421    222233    3567888888888765321    122344444 56678887776643


Q ss_pred             ----CcccccCc-ccccEEEcCCCcccCCCc----hhhcCCCcccEEeccCCcccc
Q 039778          409 ----IPTWIGNI-SFLDAIIMPDNHLEGPIP----SEFCQLDYLEILDLSKNNIAG  455 (459)
Q Consensus       409 ----~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~  455 (459)
                          ..+.+..+ ..+++++++.|++.....    ..+..++.++.+.+.+|+++.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                22344444 567888888888875433    344566788888888887753

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.11  E-value=0.023  Score=28.28  Aligned_cols=23  Identities=43%  Similarity=0.485  Sum_probs=15.0

Q ss_pred             CCCCcEEEccCCcccccchhhhc
Q 039778            1 LSNLKFLDLSHNSFNNSVLSSLA   23 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~~~~   23 (459)
                      |++|++|++++|.+++.....++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            57888888888888876666553

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.84  E-value=0.0014  Score=61.42  Aligned_cols=159  Identities=28%  Similarity=0.293  Sum_probs=112.5

Q ss_pred             ccEEEeecCcCCCC----CCCcccCCCCCcEEEccCCccccccchhHHhcc----cccceeeccccccccc----ccccc
Q 039778          298 LGFLSITFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC----FNLEYLLLSNNSLQGQ----LFSKK  365 (459)
Q Consensus       298 L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~i~~~----~~~~~  365 (459)
                      +..+.+.+|.+.+.    ....+...++|+.|++++|.+.++....+....    ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            67788888888754    344567788999999999998855554444332    4577899999988753    44566


Q ss_pred             ccccCCceEEccCCcccCC----Cccccc----ccCCCcEEEcccccccCC----CcccccCccc-ccEEEcCCCcccCC
Q 039778          366 NNLTKLKRLNLDGNHFIGD----IPESLS----NCSSLQGLYISDNDITGS----IPTWIGNISF-LDAIIMPDNHLEGP  432 (459)
Q Consensus       366 ~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~~~  432 (459)
                      ...+.++.+++..|.+...    .+..+.    ...++++|.+++|.++..    ....+...++ +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            6688999999999987422    223333    367899999999987743    2234555566 77799999988744


Q ss_pred             C----chhhcCC-CcccEEeccCCccccc
Q 039778          433 I----PSEFCQL-DYLEILDLSKNNIAGS  456 (459)
Q Consensus       433 ~----~~~~~~~-~~L~~L~l~~~~~~~~  456 (459)
                      .    ...+... ..++.++++.|+|+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~  277 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEK  277 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence            2    2334444 6789999999999854

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.48  E-value=0.13  Score=25.93  Aligned_cols=18  Identities=39%  Similarity=0.608  Sum_probs=12.7

Q ss_pred             CcccEEeccCCcccccCCC
Q 039778          441 DYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       441 ~~L~~L~l~~~~~~~~~p~  459 (459)
                      ++|+.|++++|+++ ++|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            45777777777777 6764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.30  E-value=0.17  Score=25.61  Aligned_cols=17  Identities=53%  Similarity=0.735  Sum_probs=9.4

Q ss_pred             CcccEEeccCCcccccCC
Q 039778          441 DYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       441 ~~L~~L~l~~~~~~~~~p  458 (459)
                      ++|+.|+|++|++. ++|
T Consensus         2 ~~L~~L~L~~N~l~-~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLS-SLP   18 (26)
T ss_pred             CCCCEEECCCCcCC-cCC
Confidence            44556666666555 444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.30  E-value=0.17  Score=25.61  Aligned_cols=17  Identities=53%  Similarity=0.735  Sum_probs=9.4

Q ss_pred             CcccEEeccCCcccccCC
Q 039778          441 DYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       441 ~~L~~L~l~~~~~~~~~p  458 (459)
                      ++|+.|+|++|++. ++|
T Consensus         2 ~~L~~L~L~~N~l~-~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLS-SLP   18 (26)
T ss_pred             CCCCEEECCCCcCC-cCC
Confidence            44556666666555 444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.87  E-value=0.0074  Score=49.26  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=59.2

Q ss_pred             cccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCccc
Q 039778          365 KNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE  444 (459)
Q Consensus       365 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  444 (459)
                      +......+.|+++.|.+.. ....|+.+..+..++++.|.+. ..|..+.....+..+++..|..+ ..|..+...+.++
T Consensus        38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            3444566777777776552 3344556666777777777776 67777777777777777777766 5677777777777


Q ss_pred             EEeccCCccc
Q 039778          445 ILDLSKNNIA  454 (459)
Q Consensus       445 ~L~l~~~~~~  454 (459)
                      .+++.+++++
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            7777777665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.24  E-value=0.4  Score=24.21  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=16.4

Q ss_pred             CCCCcEEEccCCcccccchhhhc
Q 039778            1 LSNLKFLDLSHNSFNNSVLSSLA   23 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~~~~   23 (459)
                      +++|+.|++++|.++....+.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46778888888888766666553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.24  E-value=0.4  Score=24.21  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=16.4

Q ss_pred             CCCCcEEEccCCcccccchhhhc
Q 039778            1 LSNLKFLDLSHNSFNNSVLSSLA   23 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~~~~   23 (459)
                      +++|+.|++++|.++....+.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46778888888888766666553

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=86.38  E-value=0.43  Score=24.13  Aligned_cols=22  Identities=36%  Similarity=0.434  Sum_probs=13.4

Q ss_pred             CCCCcEEEccCCc-ccccchhhh
Q 039778            1 LSNLKFLDLSHNS-FNNSVLSSL   22 (459)
Q Consensus         1 ~~~L~~L~l~~~~-~~~~~~~~~   22 (459)
                      |++|+.|++++|. +++.....+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            5677777777773 655444443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.46  E-value=0.64  Score=24.05  Aligned_cols=21  Identities=33%  Similarity=0.466  Sum_probs=15.0

Q ss_pred             CCCcEEEccCCcccccchhhh
Q 039778            2 SNLKFLDLSHNSFNNSVLSSL   22 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~   22 (459)
                      ++|++|+|++|.+.+.....+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L   22 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARAL   22 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHH
Confidence            578888888888776555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	459
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-21
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-21
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-07
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-06
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-05
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		3e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 152/341 (44%), Gaps = 15/341 (4%)
Query: 124 LRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDR 183
           L FLD+S      G   L   G   +L+ L +  N  +   +     C    L+ L I  
Sbjct: 199 LEFLDVSSNNFSTGIPFL---GDCSALQHLDISGNKLSGDFSRAISTC--TELKLLNISS 253
Query: 184 NDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEP 243
           N F+G +P     L SL+ L + +N+ TG +         ++  L LS NHF   +   P
Sbjct: 254 NQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV--PP 309
Query: 244 FFNYSKLKIFHAN--NSLSGPFRLPTRSR-KNIIALDISYNKLQGHIPVEIGKVLPNLGF 300
           FF    L    A   N+ SG   + T  + + +  LD+S+N+  G +P  +  +  +L  
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 301 LSITFNAFNGSIPSSFGD--MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXX 358
           L ++ N F+G I  +      N+L  L L NN  TG+IP  L+  C  L           
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLS 428
Query: 359 XXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISF 418
               S               N   G+IP+ L    +L+ L +  ND+TG IP+ + N + 
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 419 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           L+ I + +N L G IP    +L+ L IL LS N+ +G++P+
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 40/211 (18%)
Query: 254 HANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV--EIGKVLPNLGFLSITFNA--FN 309
           H N S+SG      +   ++ +LD+S N L G +     +G     L FL+++ N   F 
Sbjct: 85  HINGSVSG-----FKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFP 138
Query: 310 GSIPSSFGDMNSLIYLDLSNNQLTGE--IPEHLAMGCFNLEYXXXXXXXXXXXXFSXXXX 367
           G +      +NSL  LDLS N ++G   +   L+ GC  L++                  
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI--------------- 182
Query: 368 XXXXXXXXXDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDN 427
                     GN   GD+   +S C +L+ L +S N+ +  IP ++G+ S L  + +  N
Sbjct: 183 ---------SGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN 230
Query: 428 HLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
            L G           L++L++S N   G +P
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIP 261

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 152/341 (44%), Gaps = 15/341 (4%)
Query: 124 LRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDR 183
           L FLD+S      G   L   G   +L+ L +  N  +   +     C    L+ L I  
Sbjct: 202 LEFLDVSSNNFSTGIPFL---GDCSALQHLDISGNKLSGDFSRAISTC--TELKLLNISS 256
Query: 184 NDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEP 243
           N F+G +P     L SL+ L + +N+ TG +         ++  L LS NHF   +   P
Sbjct: 257 NQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV--PP 312
Query: 244 FFNYSKLKIFHAN--NSLSGPFRLPTRSR-KNIIALDISYNKLQGHIPVEIGKVLPNLGF 300
           FF    L    A   N+ SG   + T  + + +  LD+S+N+  G +P  +  +  +L  
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 301 LSITFNAFNGSIPSSFGD--MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXX 358
           L ++ N F+G I  +      N+L  L L NN  TG+IP  L+  C  L           
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLS 431
Query: 359 XXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISF 418
               S               N   G+IP+ L    +L+ L +  ND+TG IP+ + N + 
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 419 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           L+ I + +N L G IP    +L+ L IL LS N+ +G++P+
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 40/211 (18%)
Query: 254 HANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV--EIGKVLPNLGFLSITFNA--FN 309
           H N S+SG      +   ++ +LD+S N L G +     +G     L FL+++ N   F 
Sbjct: 88  HINGSVSG-----FKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFP 141
Query: 310 GSIPSSFGDMNSLIYLDLSNNQLTGE--IPEHLAMGCFNLEYXXXXXXXXXXXXFSXXXX 367
           G +      +NSL  LDLS N ++G   +   L+ GC  L++                  
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI--------------- 185
Query: 368 XXXXXXXXXDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDN 427
                     GN   GD+   +S C +L+ L +S N+ +  IP ++G+ S L  + +  N
Sbjct: 186 ---------SGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN 233
Query: 428 HLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
            L G           L++L++S N   G +P
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 108/280 (38%), Gaps = 32/280 (11%)
Query: 159 NFAKTVTTTQGLCELVHLQDLYIDR-NDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSS 217
           N  K       L  L +L  LYI   N+ +G +P  +A LT L  L++    ++G +   
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD- 119
Query: 218 PLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALD 277
               L+ I+ L          ++L+  F+Y         N+LSG       S  N++ + 
Sbjct: 120 ---FLSQIKTL----------VTLD--FSY---------NALSGTLPPSISSLPNLVGIT 155
Query: 278 ISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP 337
              N++ G IP   G        ++I+ N   G IP +F ++N L ++DLS N L G+  
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-- 212
Query: 338 EHLAMGCFNLEYXXXXXXXXXXXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNCSSLQG 397
             +  G                                   N   G +P+ L+    L  
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 398 LYISDNDITGSIPTWIGNISFLDAIIMPDNH--LEGPIPS 435
           L +S N++ G IP   GN+   D     +N      P+P+
Sbjct: 273 LNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPA 311

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 28/163 (17%)
Query: 295 LPNLGFLSIT-FNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXX 353
           LP L FL I   N   G IP +   +  L YL +++  ++G IP+ L+            
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ----------- 123
Query: 354 XXXXXXXXFSXXXXXXXXXXXXXDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWI 413
                   FS               N   G +P S+S+  +L G+    N I+G+IP   
Sbjct: 124 IKTLVTLDFSY--------------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 414 GNISFL-DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 455
           G+ S L  ++ +  N L G IP  F  L+ L  +DLS+N + G
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFC 438
           N+ +G IP +++  + L  LYI+  +++G+IP ++  I  L  +    N L G +P    
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 439 QLDYLEILDLSKNNIAGSLP 458
            L  L  +    N I+G++P
Sbjct: 147 SLPNLVGITFDGNRISGAIP 166

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 37/241 (15%)
Query: 114 VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL 173
           +P    G+  L+ L L+        ++  +  SFPSL+ LY+K  N  K    T+ L +L
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQI--NAASFPSLRDLYIKG-NMRKLDLGTRCLEKL 348
Query: 174 VHLQDLYIDRNDFIGSLPWC---LANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLL 230
            +LQ L +  +D   S   C   L NL  L+ L++  N+  G L          +E+L +
Sbjct: 349 ENLQKLDLSHSDIEAS-DCCNLQLKNLRHLQYLNLSYNEPLG-LEDQAFKECPQLELLDV 406
Query: 231 SNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIAL-DISYNKLQG---- 285
           +  H  +     PF N   L++ + ++ L     L T ++  +  L D+ +  LQG    
Sbjct: 407 AFTHLHVKAPHSPFQNLHLLRVLNLSHCL-----LDTSNQHLLAGLQDLRHLNLQGNSFQ 461
Query: 286 -------HIPVEIGK----VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTG 334
                  ++   +G     +L +   LSI   AF+G        + ++ +LDLS+N LTG
Sbjct: 462 DGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG--------LRNVNHLDLSHNSLTG 513
Query: 335 E 335
           +
Sbjct: 514 D 514

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	459
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-50
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  296 bits (759), Expect = 1e-92
 Identities = 137/473 (28%), Positives = 214/473 (45%), Gaps = 29/473 (6%)

Query: 1   LSNLKFLDLSHNSFNNSV--LSSLAGLSSLKNLSLAYNRLEGSINIE---GMNMLESLDL 55
            ++L  LDLS NS +  V  L+SL   S LK L+++ N L+    +     +N LE LDL
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158

Query: 56  SGNKFNSSILSSLTA---LSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNL 112
           S N  + + +           L+ L +      G     ++    NLE LD+S N   + 
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNF-ST 214

Query: 113 VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCE 172
            +P        L+ LD+SG ++        +I +   LK L + SN F   +        
Sbjct: 215 GIP-FLGDCSALQHLDISGNKL--SGDFSRAISTCTELKLLNISSNQFVGPIPPLP---- 267

Query: 173 LVHLQDLYIDRNDFIGSLP-WCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLS 231
           L  LQ L +  N F G +P +      +L  L +  N   G +        + +E L LS
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALS 326

Query: 232 NNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPT---RSRKNIIALDISYNKLQGHI 287
           +N+F   + ++       LK+   + N  SG   LP        +++ LD+S N   G I
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE--LPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 288 PVEIGKV-LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN 346
              + +     L  L +  N F G IP +  + + L+ L LS N L+G IP  L      
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSK 443

Query: 347 LEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT 406
           L  L L  N L+G++  +   +  L+ L LD N   G+IP  LSNC++L  + +S+N +T
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 407 GSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           G IP WIG +  L  + + +N   G IP+E      L  LDL+ N   G++P+
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  272 bits (697), Expect = 9e-84
 Identities = 143/464 (30%), Positives = 218/464 (46%), Gaps = 45/464 (9%)

Query: 7   LDLSHNSFN---NSVLSSLAGLSSLKNLSLAYNRLEGSI-NIEGMNMLESLDLSGNKFNS 62
           +DLS    N   ++V SSL  L+ L++L L+ + + GS+   +    L SLDLS N  + 
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 63  SI--LSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVP--KDY 118
            +  L+SL + S L+ LN+ +        V     L++LE LD+S N I    V      
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
            G  +L+ L +SG +I  G      +    +L+ L + SNNF+  +     L +   LQ 
Sbjct: 175 DGCGELKHLAISGNKIS-GDV---DVSRCVNLEFLDVSSNNFSTGIPF---LGDCSALQH 227

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIP 238
           L I  N   G     ++  T L++L++  NQ  G +   P   L S++ L L+ N F   
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGE 284

Query: 239 ISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 298
           I          L                         LD+S N   G +P   G     L
Sbjct: 285 IPDFLSGACDTLTG-----------------------LDLSGNHFYGAVPPFFGS-CSLL 320

Query: 299 GFLSITFNAFNGSIP-SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSL 357
             L+++ N F+G +P  +   M  L  LDLS N+ +GE+PE L     +L  L LS+N+ 
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 358 QGQLFSK--KNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGN 415
            G +     +N    L+ L L  N F G IP +LSNCS L  L++S N ++G+IP+ +G+
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 416 ISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           +S L  + +  N LEG IP E   +  LE L L  N++ G +PS
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  268 bits (688), Expect = 2e-82
 Identities = 140/485 (28%), Positives = 214/485 (44%), Gaps = 34/485 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
            S L+ LD+S N  +     +++  + LK L+++ N+  G I    +  L+ L L+ NKF
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281

Query: 61  NSSILSSLTA-LSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
              I   L+    +L  L+L    F G        S S LE L +S N     +      
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 120 GLRKLRFLDLSGLRIRDGSKVLHSIGSF-PSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
            +R L+ LDLS        ++  S+ +   SL TL L SNNF+  +           LQ+
Sbjct: 341 KMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ-- 236
           LY+  N F G +P  L+N + L  LH+  N L+G + SS L  L+ +  L L  N  +  
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGE 457

Query: 237 IPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 295
           IP           L+      N L+G       +  N+  + +S N+L G IP  IG+ L
Sbjct: 458 IPQE---LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-L 513

Query: 296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM------------- 342
            NL  L ++ N+F+G+IP+  GD  SLI+LDL+ N   G IP  +               
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573

Query: 343 ------GCFNLEYLLLSNN--SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSS 394
                      +    + N    QG    + N L+     N+    + G    +  N  S
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 395 LQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 454
           +  L +S N ++G IP  IG++ +L  + +  N + G IP E   L  L ILDLS N + 
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 455 GSLPS 459
           G +P 
Sbjct: 694 GRIPQ 698

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  258 bits (661), Expect = 2e-78
 Identities = 132/489 (26%), Positives = 211/489 (43%), Gaps = 42/489 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEG-MNMLESLDLSG 57
            + LK L++S N F   +      L SL+ LSLA N+  G I   + G  + L  LDLSG
Sbjct: 246 CTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
           N F  ++     + S L  L L +  F G   +  L  +  L+ LD+S NE    +    
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIG--SFPSLKTLYLKSNNFAKTVTTTQGLCELVH 175
                 L  LDLS         +L ++      +L+ LYL++N F   +  T  L     
Sbjct: 364 TNLSASLLTLDLSSNNFS--GPILPNLCQNPKNTLQELYLQNNGFTGKIPPT--LSNCSE 419

Query: 176 LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF 235
           L  L++  N   G++P  L +L+ LR L +  N L G +    LM++ ++E L+L  N  
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDL 478

Query: 236 Q--IPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG 292
              IP  L    N + L     +NN L+G         +N+  L +S N   G+IP E+G
Sbjct: 479 TGEIPSGL---SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 293 KVLPNLGFLSITFNAFNGSIPSSFGDMNSL----------------------IYLDLSNN 330
               +L +L +  N FNG+IP++    +                         +   +  
Sbjct: 536 D-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

Query: 331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLS 390
           +  G   E L           +++    G      +N   +  L++  N   G IP+ + 
Sbjct: 595 EFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653

Query: 391 NCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK 450
           +   L  L +  NDI+GSIP  +G++  L+ + +  N L+G IP     L  L  +DLS 
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

Query: 451 NNIAGSLPS 459
           NN++G +P 
Sbjct: 714 NNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  220 bits (564), Expect = 2e-64
 Identities = 100/376 (26%), Positives = 156/376 (41%), Gaps = 22/376 (5%)

Query: 95  SLSNLEELDMSDNEIDNLV--VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKT 152
               +  +D+S   ++     V      L  L  L LS   I   +  +       SL +
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI---NGSVSGFKCSASLTS 104

Query: 153 LYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLP-WCLANLTSLRVLHVPDNQLT 211
           L L  N+ +  VTT   L     L+ L +  N             L SL VL +  N ++
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 212 GNLSSSPLM--HLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTR 268
           G      ++      ++ L +S N     +          L+    ++N+ S    +P  
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTG--IPFL 219

Query: 269 SR-KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDL 327
                +  LDIS NKL G     I      L  L+I+ N F G IP     + SL YL L
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276

Query: 328 SNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIP- 386
           + N+ TGEIP+ L+  C  L  L LS N   G +     + + L+ L L  N+F G++P 
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 387 ESLSNCSSLQGLYISDNDITGSIPTWIGNISF-LDAIIMPDNHLEGPIPSEFCQ--LDYL 443
           ++L     L+ L +S N+ +G +P  + N+S  L  + +  N+  GPI    CQ   + L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 444 EILDLSKNNIAGSLPS 459
           + L L  N   G +P 
Sbjct: 397 QELYLQNNGFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  193 bits (494), Expect = 8e-55
 Identities = 96/395 (24%), Positives = 162/395 (41%), Gaps = 20/395 (5%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLS-SLKNLSLAYNRLEGSINIE----GMNMLESLDL 55
           +  LK LDLS N F+  +  SL  LS SL  L L+ N   G I         N L+ L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 56  SGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVP 115
             N F   I  +L+  S L  L+L      GT     L SLS L +L +  N ++   +P
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNMLEG-EIP 459

Query: 116 KDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVH 175
           ++   ++ L  L L    +    ++   + +  +L  + L +N     +     +  L +
Sbjct: 460 QELMYVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNNRLTGEIPKW--IGRLEN 515

Query: 176 LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF 235
           L  L +  N F G++P  L +  SL  L +  N   G + ++ +   +      ++ N  
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA-MFKQS----GKIAANFI 570

Query: 236 --QIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK 293
             +  + ++      +           G               +I+     GH       
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630

Query: 294 VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 353
              ++ FL +++N  +G IP   G M  L  L+L +N ++G IP+ +      L  L LS
Sbjct: 631 -NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLS 688

Query: 354 NNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPES 388
           +N L G++    + LT L  ++L  N+  G IPE 
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  154 bits (392), Expect = 6e-41
 Identities = 88/354 (24%), Positives = 144/354 (40%), Gaps = 24/354 (6%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGN 58
            + L+ L L +N F   +  +L+  S L +L L++N L G+I  ++  ++ L  L L  N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
                I   L  + +L  L L      G      L + +NL  + +S+N +    +PK  
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRL-TGEIPKWI 510

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
             L  L  L LS      G+ +   +G   SL  L L +N F  T+              
Sbjct: 511 GRLENLAILKLSNNSF-SGN-IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK---- 564

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDN--QLTGNLSSSPLMHLTSIEVLLLSNNHF- 235
             I  N   G     + N    +  H   N  +  G  S   L  L++     +++  + 
Sbjct: 565 --IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRLSTRNPCNITSRVYG 621

Query: 236 -QIPISLEPFFNYSKLKIFHANNSLSGPFRLPTR--SRKNIIALDISYNKLQGHIPVEIG 292
                + +   +   L +  + N LSG   +P    S   +  L++ +N + G IP E+G
Sbjct: 622 GHTSPTFDNNGSMMFLDM--SYNMLSGY--IPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 293 KVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN 346
             L  L  L ++ N  +G IP +   +  L  +DLSNN L+G IPE      F 
Sbjct: 678 D-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =   99 bits (250), Expect = 2e-22
 Identities = 61/286 (21%), Positives = 102/286 (35%), Gaps = 31/286 (10%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGN 58
           +  L+ L L  N     + S L+  ++L  +SL+ NRL G I   I  +  L  L LS N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
            F+ +I + L    SL  L+L    F GT       ++       ++ N I         
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIP----AAMFKQS-GKIAANFIAGKR-YVYI 578

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLC------- 171
           +     +    +G  +         +    +     + S  +    + T           
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 172 ---------------ELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSS 216
                           + +L  L +  ND  GS+P  + +L  L +L +  N+L G +  
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698

Query: 217 SPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGP 262
           + +  LT +  + LSNN+   PI     F       F  N  L G 
Sbjct: 699 A-MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  194 bits (496), Expect = 2e-55
 Identities = 91/472 (19%), Positives = 166/472 (35%), Gaps = 27/472 (5%)

Query: 3   NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGNKF 60
           + +  D SH      V   L   +++  L+L +N+L           + L SLD+  N  
Sbjct: 5   SHEVADCSHLKL-TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
           +         L  L+ LNL         D +     +NL EL +  N I  +     +  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNLTELHLMSNSIQKI-KNNPFVK 119

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
            + L  LDLS   +      L +     +L+ L L +N      +    +     L+ L 
Sbjct: 120 QKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLM--HLTSIEVLLLSNNHFQ-I 237
           +  N      P C   +  L  L + + QL  +L+    +    TSI  L LSN+     
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 238 PISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK--- 293
             +      ++ L +   + N+L+            +    + YN +Q      +     
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 294 -----VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE 348
                +  +    SI+  +       SF  +  L +L++ +N + G        G  NL+
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLK 356

Query: 349 YLLLSNNSLQGQLFSKKN----NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDND 404
           YL LSN+    +  + +       + L  LNL  N       ++ S    L+ L +  N+
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 405 ITGSIPTW-IGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 455
           I   +       +  +  I +  N       + F  +  L+ L L +  +  
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  180 bits (459), Expect = 3e-50
 Identities = 91/479 (18%), Positives = 157/479 (32%), Gaps = 65/479 (13%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLA---GLSSLKNLSLAYNRLEGSINIEGMNM----LESL 53
           +  L  L L++     S+   L      +S++NLSL+ ++L  + N   + +    L  L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 54  DLSGNKFNSSILSSLTALSSLRKLNL--------MATGFKGTFDVQELDSLSNLEELDMS 105
           DLS N  N     S   L  L    L         +    G F+V+ L+   +  +  +S
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

Query: 106 DNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVT 165
              +  +     ++ L+ L  L++    I       +      +LK L L ++  +    
Sbjct: 314 LASLPKID-DFSFQWLKCLEHLNMEDNDIPGIKS--NMFTGLINLKYLSLSNSFTSLRTL 370

Query: 166 TTQGLCELVH--LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLT 223
           T +    L H  L  L + +N          + L  L VL +  N++   L+      L 
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 224 SIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKL 283
           +I  + LS N +                 F    SL                L +    L
Sbjct: 431 NIFEIYLSYNKYLQLTR----------NSFALVPSLQ--------------RLMLRRVAL 466

Query: 284 QG--HIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA 341
           +     P      L NL  L ++ N            +  L  LDL +N L         
Sbjct: 467 KNVDSSPSPFQP-LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-------- 517

Query: 342 MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYIS 401
                     L  ++  G        L+ L  LNL+ N F     E   +   L+ + + 
Sbjct: 518 ---------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 402 DNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFC-QLDYLEILDLSKNNIAGSLPS 459
            N++     +   N   L ++ +  N +       F      L  LD+  N    +  S
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  177 bits (452), Expect = 2e-49
 Identities = 101/487 (20%), Positives = 176/487 (36%), Gaps = 56/487 (11%)

Query: 1   LSNLKFLDLSHNS--------FNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNML 50
           L NL+ L LS+N          +          SSLK L L+ N+++         +  L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIF------ANSSLKKLELSSNQIKEFSPGCFHAIGRL 197

Query: 51  ESLDLSGNKFNSSILSSLT---ALSSLRKLNLMATGFKGTFDVQELDSL--SNLEELDMS 105
             L L+  +   S+   L    A +S+R L+L  +             L  +NL  LD+S
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLS 256

Query: 106 DNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVT 165
            N ++ +     +  L +L +  L    I+      HS+    +++ L LK +       
Sbjct: 257 YNNLNVV-GNDSFAWLPQLEYFFLEYNNIQHLFS--HSLHGLFNVRYLNLKRS------- 306

Query: 166 TTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSI 225
                          I          +    L  L  L++ DN + G + S+    L ++
Sbjct: 307 ----------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINL 355

Query: 226 EVLLLSNNHFQI-PISLEPFFNYSKLKIFH---ANNSLSGPFRLPTRSRKNIIALDISYN 281
           + L LSN+   +  ++ E F + +   +       N +S           ++  LD+  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 282 KLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTG-EIPEHL 340
           ++   +  +  + L N+  + +++N +     +SF  + SL  L L    L   +     
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 341 AMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNH--------FIGDIPESLSNC 392
                NL  L LSNN++          L KL+ L+L  N+          G     L   
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 393 SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN 452
           S L  L +  N           ++  L  I +  N+L     S F     L+ L+L KN 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 453 IAGSLPS 459
           I      
Sbjct: 596 ITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (400), Expect = 3e-42
 Identities = 83/429 (19%), Positives = 149/429 (34%), Gaps = 32/429 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGN 58
            +NL  LDLS+N+ N     S A L  L+   L YN ++   +  + G+  +  L+L  +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 59  ---------KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEI 109
                            S   L  L  LN+      G         L NL+ L +S++  
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFT 365

Query: 110 DNLVVPKD---YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT 166
               +  +         L  L+L+  +I        +      L+ L L  N   + +T 
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIES--DAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 167 TQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG-NLSSSPLMHLTSI 225
            +    L ++ ++Y+  N ++       A + SL+ L +    L   + S SP   L ++
Sbjct: 424 QE-WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 226 EVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLS--------GPFRLPTRSRKNIIAL 276
            +L LSNN+    I+ +      KL+I    +N+L+        G      +   ++  L
Sbjct: 483 TILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 277 DISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEI 336
           ++  N             L  L  + +  N  N    S F +  SL  L+L  N +T   
Sbjct: 542 NLESNGFDEIPVEVFKD-LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 337 PEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ 396
            +       NL  L +  N       S    +  +   + +            +      
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY--LCNTPPHYH 658

Query: 397 GLYISDNDI 405
           G  +   D 
Sbjct: 659 GFPVRLFDT 667

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  155 bits (395), Expect = 2e-41
 Identities = 75/385 (19%), Positives = 142/385 (36%), Gaps = 26/385 (6%)

Query: 94  DSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTL 153
           D  +N+  L+++ N++  L    ++    +L  LD+    I             P LK L
Sbjct: 22  DLPTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEP--ELCQKLPMLKVL 78

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGN 213
            L+ N    +  + +      +L +L++  N              +L  L +  N L+  
Sbjct: 79  NLQHNEL--SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS- 135

Query: 214 LSSSPLMHLTSIEVLLLSNNHFQ-IPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRK 271
                 + L +++ LLLSNN  Q +       F  S LK    ++N +         +  
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 272 NIIALDISYNKLQGHIPVEIGKV--LPNLGFLSITFNAFNGSIPSSFGDMN--SLIYLDL 327
            +  L ++  +L   +  ++       ++  LS++ +  + +  ++F  +   +L  LDL
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 328 SNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDI-- 385
           S N L     +  A     LEY  L  N++Q       + L  ++ LNL  +     I  
Sbjct: 256 SYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 386 -------PESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSE-- 436
                    S      L+ L + DNDI G        +  L  + + ++       +   
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 437 --FCQLDYLEILDLSKNNIAGSLPS 459
                   L IL+L+KN I+     
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (289), Expect = 1e-27
 Identities = 60/256 (23%), Positives = 103/256 (40%), Gaps = 13/256 (5%)

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRK 271
            L+  P    T+I VL L++N  +   +   F  YS+L       N++S       +   
Sbjct: 15  KLTQVPDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLP 73

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQ 331
            +  L++ +N+L             NL  L +  N+      + F    +LI LDLS+N 
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAF-CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 332 LTGEIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKNNLTKLKRLNLDGNHFIGDIPES 388
           L+            NL+ LLLSNN +Q    +      N + LK+L L  N      P  
Sbjct: 133 LSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGC 190

Query: 389 LSNCSSLQGLYISDNDITGSIPTWIG---NISFLDAIIMPDNHLEGPIPSEFCQLDY--L 443
                 L GL++++  +  S+   +      + +  + + ++ L     + F  L +  L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 444 EILDLSKNNIAGSLPS 459
            +LDLS NN+      
Sbjct: 251 TMLDLSYNNLNVVGND 266

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 7e-25
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 7/186 (3%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335
            D S+ KL   +P ++     N+  L++T N       ++F   + L  LD+  N ++  
Sbjct: 9   ADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL 395
            PE        L+ L L +N L           T L  L+L  N              +L
Sbjct: 65  EPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 396 QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEF--CQLDYLEILDLSKNNI 453
             L +S N ++ +       +  L  +++ +N ++     E        L+ L+LS N I
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 454 AGSLPS 459
               P 
Sbjct: 184 KEFSPG 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  186 bits (475), Expect = 4e-53
 Identities = 105/477 (22%), Positives = 177/477 (37%), Gaps = 33/477 (6%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGN 58
              L+ LDLS          +   LS L  L L  N ++        G++ L+ L     
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
              S     +  L +L++LN+     +     +   +L+NLE LD+S N+I ++    D 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDL 169

Query: 119 RGLRKLRF----LDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELV 174
           R L ++      LDLS   +   + +         L  L L++N  +  V  T  +  L 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPM---NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC-IQGLA 225

Query: 175 HLQDLYIDRNDFIGSL------PWCLANLTSLRVLHVPDNQLTGNLSSSPLM--HLTSIE 226
            L+   +   +F             L  L +L +       L   L     +   LT++ 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 227 VLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGH 286
              L +   +        F +  L++   N         PT   K++  L  + NK    
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLEL--VNCKFGQ---FPTLKLKSLKRLTFTSNKGGNA 340

Query: 287 IPVEIGKVLPNLGFLSITFNAFN--GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 344
                   LP+L FL ++ N  +  G    S     SL YLDLS N +         +G 
Sbjct: 341 FS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGL 395

Query: 345 FNLEYLLLSNNSLQGQL-FSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDN 403
             LE+L   +++L+    FS   +L  L  L++   H         +  SSL+ L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 404 DITGSI-PTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
               +  P     +  L  + +    LE   P+ F  L  L++L++S NN       
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  182 bits (465), Expect = 1e-51
 Identities = 99/476 (20%), Positives = 178/476 (37%), Gaps = 33/476 (6%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGNK 59
            + K LDLS N   +    S      L+ L L+   ++   +   + ++ L +L L+GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
             S  L + + LSSL+KL  + T      +   +  L  L+EL+++ N I +  +P+ + 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 120 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLK----TLYLKSNNFAKTVTTTQGLCELVH 175
            L  L  LDLS  +I+  S     +     +     +L L  N          G  + + 
Sbjct: 147 NLTNLEHLDLSSNKIQ--SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP---GAFKEIR 201

Query: 176 LQDLYIDRNDFIGSLP-WCLANLTSLRVLHVPDNQLTGN-----LSSSPLMHLTSIEVLL 229
           L  L +  N    ++   C+  L  L V  +   +            S L  L ++ +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 230 LSNNHFQIPISLEP--FFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQGH 286
               +    +      F   + +  F   + ++                L++   K    
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQF 319

Query: 287 IPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM-GCF 345
                   L       +TF +  G    S  D+ SL +LDLS N L+ +     +  G  
Sbjct: 320 PT------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPES-LSNCSSLQGLYISDND 404
           +L+YL LS N +   + S    L +L+ L+   ++       S   +  +L  L IS   
Sbjct: 374 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 405 ITGSIPTWIGNISFLDAIIMPDNHLEGPIPSE-FCQLDYLEILDLSKNNIAGSLPS 459
              +       +S L+ + M  N  +     + F +L  L  LDLS+  +    P+
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  182 bits (464), Expect = 2e-51
 Identities = 89/492 (18%), Positives = 164/492 (33%), Gaps = 36/492 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI---NIEGMNMLESLDLSG 57
           LS+L+ L     +  +     +  L +LK L++A+N ++          +  LE LDLS 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLS--NLEELDMSDNEIDNLVVP 115
           NK  S   + L  L  +  LNL         +  +  +     L +L + +N     V+ 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 116 KDYRGLRKLRFLDLSGLRIRDGSKVLH-SIGSFPSLKTLYLKSNNFAK----TVTTTQGL 170
              +GL  L    L     R+   +      +   L  L ++    A             
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 171 CELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG------------------ 212
             L ++    +             +     + L + + +                     
Sbjct: 279 NCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQ-IPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSR 270
             ++   + L S+E L LS N         +  F  + LK    + N +           
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL- 395

Query: 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN 330
           + +  LD  ++ L+      +   L NL +L I+      +    F  ++SL  L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLS 390
                    +     NL +L LS   L+    +  N+L+ L+ LN+  N+F         
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 391 NCSSLQGLYISDNDITGSIPTWIGNI-SFLDAIIMPDNHLEGPIPSE--FCQLDYLEILD 447
             +SLQ L  S N I  S    + +  S L  + +  N        +     +     L 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 448 LSKNNIAGSLPS 459
           +    +  + PS
Sbjct: 576 VEVERMECATPS 587

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  164 bits (418), Expect = 6e-45
 Identities = 82/456 (17%), Positives = 158/456 (34%), Gaps = 43/456 (9%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKN----LSLAYNRLEGSINIEGMNM-LESLDL 55
           L+NL+ LDLS N   +   + L  L  +      L L+ N +          + L  L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 56  SGNKFNSSILS-SLTALSSLRKLNLMATGFKGTFDVQELD--SLSNLEELDMSDNEIDNL 112
             N  + +++   +  L+ L    L+   F+   ++++ D  +L  L  L + +  +  L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 113 -----VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK----- 162
                 +   +  L  +    L  + I    + +         + L L +  F +     
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTI----ERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 163 ------------TVTTTQGLCELVHLQDLYIDRND--FIGSLPWCLANLTSLRVLHVPDN 208
                                +L  L+ L + RN   F G         TSL+ L +  N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 209 QLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPT 267
            +     SS  + L  +E L   +++ +       F +   L     ++      F    
Sbjct: 384 GVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDL 327
               ++  L ++ N  Q +   +I   L NL FL ++        P++F  ++SL  L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 328 SNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSK-KNNLTKLKRLNLDGNHFIGDIP 386
           S+N               +L+ L  S N +      + ++  + L  LNL  N F     
Sbjct: 502 SHNNFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

Query: 387 ES--LSNCSSLQGLYISDNDITGSIPTWIGNISFLD 420
               L      + L +    +  + P+    +  L 
Sbjct: 561 HQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  107 bits (269), Expect = 4e-25
 Identities = 54/322 (16%), Positives = 101/322 (31%), Gaps = 23/322 (7%)

Query: 147 FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVP 206
             S K L L  N        +        LQ L + R +          +L+ L  L + 
Sbjct: 27  PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 207 DNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRL 265
            N +   L+      L+S++ L+    +     +  P  +   LK  + A+N +      
Sbjct: 85  GNPIQS-LALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 266 PTRSR-KNIIALDISYNKLQGHIPVEIGKVLPNLGF----LSITFNAFNGSIPSSFGDMN 320
              S   N+  LD+S NK+Q     ++   L  +      L ++ N  N   P +F ++ 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQL------FSKKNNLTKLKRL 374
            L  L L NN  +  + +    G   LE   L     + +        S    L  L   
Sbjct: 202 -LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 375 NLDGNH---FIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG 431
                +   ++ DI +  +  +++    +    I                + + +     
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ 318

Query: 432 PIPSEFCQLDYLEILDLSKNNI 453
               +   L  L        N 
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 48/259 (18%), Positives = 91/259 (35%), Gaps = 15/259 (5%)

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRK 271
           N    P     S + L LS N  +   S   FF++ +L++   +   +        +S  
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQ 331
           ++  L ++ N +Q          L +L  L               G + +L  L++++N 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 332 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLK----RLNLDGNHFIGDIPE 387
           +             NLE+L LS+N +Q    +    L ++      L+L  N      P 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 388 SLSNCSSLQGLYISDNDITGSIP-TWIGNISFLDAI------IMPDNHLEGPIPSEFCQL 440
           +      L  L + +N  + ++  T I  ++ L+           + +LE    S    L
Sbjct: 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 441 DYLEILDLSKNNIAGSLPS 459
             L I +     +   L  
Sbjct: 255 CNLTIEEFRLAYLDYYLDD 273

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 4/137 (2%)

Query: 323 IYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFI 382
           I           +IP++L    F+ + L LS N L+        +  +L+ L+L      
Sbjct: 10  ITYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 383 GDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDY 442
                +  + S L  L ++ N I          +S L  ++  + +L          L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 443 LEILDLSKNNIAGSLPS 459
           L+ L+++ N I      
Sbjct: 126 LKELNVAHNLIQSFKLP 142

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  185 bits (471), Expect = 2e-52
 Identities = 80/463 (17%), Positives = 167/463 (36%), Gaps = 17/463 (3%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGN 58
              LK L       ++     L    +L++L L  N +             L+ LD   N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPK-D 117
             +      +++L     L+L   G             +  + L+    +   ++     
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
              ++ L       +   D S  +       S++++ L+ + F    + T        LQ
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT--FHCFSGLQ 281

Query: 178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQI 237
           +L +     +  LP  L  L++L+ L +  N+    L      +  S+  L +  N  ++
Sbjct: 282 ELDLTATH-LSELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRL 339

Query: 238 PISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRK--NIIALDISYNKLQGHIPVEIGKV 294
            +      N   L+    +++ +        + R   ++ +L++SYN+    +  E  K 
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKE 398

Query: 295 LPNLGFLSITFNAFNGSIP-SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 353
            P L  L + F         S F +++ L  L+LS++ L     +    G   L++L L 
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQ 457

Query: 354 NNSLQGQLFSKKN---NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP 410
            N        K N    L +L+ L L           + ++   +  + +S N +T S  
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 411 TWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
             + ++  +  + +  NH+   +PS    L     ++L +N +
Sbjct: 518 EALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  184 bits (468), Expect = 5e-52
 Identities = 87/469 (18%), Positives = 173/469 (36%), Gaps = 17/469 (3%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGN 58
              L  L L+ N       ++L+G  +LK+L      +       +     LESL L  N
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLE--ELDMSDNEIDNLVVPK 116
             +S  L        L+ L+            +++ SL       L+++ N+I  +    
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGI--EP 196

Query: 117 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176
                   + L+  G +            +  SL     +  +              + +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236
           + + + ++ F           + L+ L +    L+   S   L+ L++++ L+LS N F+
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFE 314

Query: 237 IPISLEPFFNYSKLKIFH-ANNSLSGPFRLPT-RSRKNIIALDISYNKLQG-HIPVEIGK 293
               +    N+  L       N+           + +N+  LD+S++ ++         +
Sbjct: 315 NLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 294 VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 353
            L +L  L++++N        +F +   L  LDL+  +L  +  +        L+ L LS
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 354 NNSLQGQLFSKKNNLTKLKRLNLDGNHF---IGDIPESLSNCSSLQGLYISDNDITGSIP 410
           ++ L        + L  L+ LNL GNHF         SL     L+ L +S  D++    
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 411 TWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
               ++  ++ + +  N L          L  +  L+L+ N+I+  LPS
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  181 bits (462), Expect = 3e-51
 Identities = 89/473 (18%), Positives = 156/473 (32%), Gaps = 24/473 (5%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGN 58
           L NL FLDL+          +      L  L L  N L       + G   L+ L     
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
             +S     L    +L  L L +        + +      L+ LD  +N I  L   +D 
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYL-SKEDM 173

Query: 119 RGLRKLR--FLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176
             L++     L+L+G  I   + +          ++L          +        +  L
Sbjct: 174 SSLQQATNLSLNLNGNDI---AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 177 QDLYIDRNDFIGSLPWCLANL--TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH 234
                +  D     P     L   S+  +++  +     +SS+     + ++ L L+  H
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATH 289

Query: 235 F-QIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG 292
             ++P         S LK    + N      ++   +  ++  L I  N  +  +     
Sbjct: 290 LSELP---SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 293 KVLPNLGFLSITFNAFNGS--IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 350
           + L NL  L ++ +    S        +++ L  L+LS N+      E     C  LE L
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELL 405

Query: 351 LLSNNSLQG-QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI 409
            L+   L+     S   NL  LK LNL  +       +      +LQ L +  N      
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 410 PTWIGNISFLDA---IIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
                ++  L     +++    L       F  L  +  +DLS N +  S   
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  177 bits (450), Expect = 2e-49
 Identities = 93/464 (20%), Positives = 167/464 (35%), Gaps = 41/464 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGN 58
            ++ + L+ S N       ++ + L +L  L L   ++        +  + L++L L+ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
                  ++L+   +L+ L  + TG     D   L +   LE L +  N I ++ +PK  
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPK-G 149

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK-SNNFAKTVTTTQGLCELVHLQ 177
               KL+ LD     I   SK    + S      L L  + N    +    G  +    Q
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSK--EDMSSLQQATNLSLNLNGNDIAGIEP--GAFDSAVFQ 205

Query: 178 DLYIDRNDFIGSLPWCLAN--LTSLRVLHVPDNQLTGNLSSS-PLMHLTSIEVLLLSNNH 234
            L       +  +   L N  + SL +    D        +    +   S+E + L  ++
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 235 FQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKV 294
           F   IS   F  +S L+                        LD++   L   +P  +   
Sbjct: 266 FFN-ISSNTFHCFSGLQE-----------------------LDLTATHLS-ELPSGLVG- 299

Query: 295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN 354
           L  L  L ++ N F      S  +  SL +L +  N    E+         NL  L LS+
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 355 NSLQGQLFSKK--NNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP-T 411
           + ++          NL+ L+ LNL  N  +    E+   C  L+ L ++   +      +
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 412 WIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 455
              N+  L  + +  + L+      F  L  L+ L+L  N+   
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (369), Expect = 2e-38
 Identities = 76/392 (19%), Positives = 141/392 (35%), Gaps = 38/392 (9%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAG--LSSLKNLSLAYNRL----EGSINIEGMNMLESLD 54
            +  + L+         +   L    + SL   +                     +ES++
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 55  LSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVV 114
           L  + F +   ++    S L++L+L AT          L  LS L++L +S N+ +NL  
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKFENLC- 317

Query: 115 PKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELV 174
                    L  L + G   R        + +  +L+ L L  ++   +      L  L 
Sbjct: 318 QISASNFPSLTHLSIKGNTKR-LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 175 HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH 234
           HLQ L +  N+ +            L +L +   +L    + SP  +L  ++VL LS++ 
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 235 FQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG-- 292
             I  S + F     L+                        L++  N        +    
Sbjct: 437 LDI-SSEQLFDGLPALQH-----------------------LNLQGNHFPKGNIQKTNSL 472

Query: 293 KVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 352
           + L  L  L ++F   +     +F  +  + ++DLS+N+LT    E  A+      YL L
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE--ALSHLKGIYLNL 530

Query: 353 SNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD 384
           ++N +   L S    L++ + +NL  N     
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 44/253 (17%), Positives = 76/253 (30%), Gaps = 9/253 (3%)

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRK 271
            L+  P     S E L  S N     I    F     L         +        +S+ 
Sbjct: 23  GLNEIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH 81

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQ 331
            +  L ++ N L   +          L  L       +        +  +L  L L +N 
Sbjct: 82  RLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140

Query: 332 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNH-FIGDIPESLS 390
           ++  I          L+ L   NN++        ++L +   L+L+ N   I  I     
Sbjct: 141 ISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 391 NCSSLQGLYISDNDITGSIPTWIGNISF--LDAIIMPDNHLEGPIPSEFCQLD--YLEIL 446
           + +  Q L          I   + N +   L      D   E   P+ F  L    +E +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 447 DLSKNNIAGSLPS 459
           +L K+       +
Sbjct: 260 NLQKHYFFNISSN 272

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 7/180 (3%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335
            +     L   IP  +     +   L  +FN       ++F  + +L +LDL+  Q+   
Sbjct: 17  YNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW- 71

Query: 336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL 395
           I E        L+ L+L+ N L     +  +    LK L              L N  +L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 396 QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI--LDLSKNNI 453
           + LY+  N I+            L  +   +N +      +   L       L+L+ N+I
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 4/135 (2%)

Query: 325 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD 384
            +  N  L  EIP  L     + E L  S N L     +  + L  L  L+L        
Sbjct: 17  YNCENLGLN-EIPGTLPN---STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 385 IPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 444
             ++  +   L  L ++ N +     T +     L  +      +             LE
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 445 ILDLSKNNIAGSLPS 459
            L L  N+I+     
Sbjct: 133 SLYLGSNHISSIKLP 147

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  181 bits (460), Expect = 1e-50
 Identities = 84/481 (17%), Positives = 166/481 (34%), Gaps = 43/481 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNK 59
            S+L    ++ +    S+  S         +    N +   S  +  +  L    +  + 
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP 217

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
           F +  +       +        T      +  + D+L +L ++++ +       +P   +
Sbjct: 218 FVAENICEAWENENSEYAQQYKT------EDLKWDNLKDLTDVEVYNCPNLT-KLPTFLK 270

Query: 120 GLRKLRFLDLSGLRIRDGSKV------LHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL 173
            L +++ ++++  R   G ++      L        ++ +Y+  NN  KT      L ++
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-KTFPVETSLQKM 329

Query: 174 VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
             L  L    N   G LP    +   L  L++  NQ+T  + ++       +E L  ++N
Sbjct: 330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHN 387

Query: 234 HF-QIPISLEPFFNYSKLKIFH-ANNSLSG-------PFRLPTRSRKNIIALDISYNKLQ 284
               IP   +   + S +     + N +         P         N+ ++++S N++ 
Sbjct: 388 KLKYIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 285 GHIPVEIGKVLPNLGFLSITFNAFNG-------SIPSSFGDMNSLIYLDLSNNQLTGEIP 337
                E+      L  +++  N               +F +   L  +DL  N+LT    
Sbjct: 447 KFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505

Query: 338 EHLAMGCFNLEYLLLSNNSLQG--QLFSKKNNLTKLK---RLNLDGNHFIGDIPESLSNC 392
           +  A     L  + LS NS           + L       + +  GN  + + PE ++ C
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 393 SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN 452
            SL  L I  NDI         NIS LD   + DN       S  C      +  L  + 
Sbjct: 566 PSLTQLQIGSNDIRKVNEKITPNISVLD---IKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

Query: 453 I 453
            
Sbjct: 623 T 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  176 bits (447), Expect = 6e-49
 Identities = 81/492 (16%), Positives = 160/492 (32%), Gaps = 72/492 (14%)

Query: 1   LSNLKFLDLSHNSFNN-----SVLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLD 54
                F DL  +  N+     S+  S         +    N +   S  +  +  L    
Sbjct: 153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFY 212

Query: 55  LSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVV 114
           +  + F +  +       +        T      +  + D+L +L ++++ +       +
Sbjct: 213 MGNSPFVAENICEAWENENSEYAQQYKT------EDLKWDNLKDLTDVEVYNCPNLT-KL 265

Query: 115 PKDYRGLRKLRFLDLSGLRIRDGSKV------LHSIGSFPSLKTLYLKSNNFAKTVTTTQ 168
           P   + L +++ ++++  R   G ++      L        ++ +Y+  NN  KT     
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-KTFPVET 324

Query: 169 GLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVL 228
            L ++  L  L    N   G LP    +   L  L++  NQ+T  + ++       +E L
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENL 382

Query: 229 LLSNNHF-QIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQG-- 285
             ++N    IP   +                         +S   + A+D SYN++    
Sbjct: 383 SFAHNKLKYIPNIFD------------------------AKSVSVMSAIDFSYNEIGSVD 418

Query: 286 -----HIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHL 340
                 +     K   N+  ++++ N  +      F   + L  ++L  N LT      L
Sbjct: 419 GKNFDPLDPTPFK-GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

Query: 341 AM------GCFNLEYLLLSNNSLQGQLFS-KKNNLTKLKRLNLDGNHFIGDIPESLSNCS 393
                     + L  + L  N L       +   L  L  ++L  N F    P    N S
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536

Query: 394 SLQGLYI------SDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD 447
           +L+G  I        N      P  I     L  + +  N +   +  +      + +LD
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLD 593

Query: 448 LSKNNIAGSLPS 459
           +  N       S
Sbjct: 594 IKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  172 bits (437), Expect = 2e-47
 Identities = 78/478 (16%), Positives = 155/478 (32%), Gaps = 60/478 (12%)

Query: 8   DLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGNKF----N 61
           +   + +      SL     +  LSL      G +   I  +  LE L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 62  SSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNL----VVPKD 117
                 ++A  S  +   M   ++ TF    +D     +  D+  + I++      + K 
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTF----VDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
            R   K   +      I   + V  ++     L+  Y+ ++ F       + +CE    +
Sbjct: 179 SRITLKDTQIGQLSNNI---TFVSKAVMRLTKLRQFYMGNSPF-----VAENICEAWENE 230

Query: 178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQI 237
           +   +      +      NL  L  + V +      L +  L  L  ++++ ++ N    
Sbjct: 231 NS--EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGIS 287

Query: 238 PISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQ-GHIPVEIGKVLP 296
              L                             + I  + I YN L+   +   + K + 
Sbjct: 288 GEQL----------------KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MK 330

Query: 297 NLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS 356
            LG L   +N   G +P +FG    L  L+L+ NQ+T  IP +       +E L  ++N 
Sbjct: 331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNK 388

Query: 357 LQG-QLFSKKNNLTKLKRLNLDGNHF-------IGDIPESLSNCSSLQGLYISDNDITGS 408
           L+         +++ +  ++   N            +  +     ++  + +S+N I+  
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 409 IPTWIGNISFLDAIIMPDNHLEG-------PIPSEFCQLDYLEILDLSKNNIAGSLPS 459
                   S L +I +  N L              F     L  +DL  N +      
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 37/239 (15%), Positives = 73/239 (30%), Gaps = 27/239 (11%)

Query: 1   LSNLKFLDLSHNSFN-------NSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNM--LE 51
           +S +  +D S+N          + +  +     ++ +++L+ N++             L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 52  SLDLSGNKFNS-------SILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDM 104
           S++L GN               +      L  ++L         D     +L  L  +D+
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 105 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH----SIGSFPSLKTLYLKSNNF 160
           S N       P        L+   +   R   G++ L      I   PSL  L + SN+ 
Sbjct: 521 SYNSFSKF--PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

Query: 161 AKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPL 219
            K            ++  L I  N  I      +       +  +  ++         L
Sbjct: 579 RKVNEKI-----TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  178 bits (454), Expect = 5e-50
 Identities = 96/500 (19%), Positives = 167/500 (33%), Gaps = 56/500 (11%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGN 58
            S L++LDLS          +  GL  L NL L  N ++        G+  LE+L     
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
           K  S     +  L +L+KLN+               +L+NL  +D+S N I  +    D 
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT-VNDL 173

Query: 119 RGLRKLRF----LDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVT--------- 165
           + LR+       LD+S   I     +         L  L L+ N  +  +          
Sbjct: 174 QFLRENPQVNLSLDMSLNPI---DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230

Query: 166 -----------------------TTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRV 202
                                    +GLC++  + +  +   +           L ++  
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVKFHCLANVSA 289

Query: 203 LHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSG 261
           + +    +        +      + L +        +   P  +   LK      N  S 
Sbjct: 290 MSLAGVSIK---YLEDVPKHFKWQSLSIIRCQ----LKQFPTLDLPFLKSLTLTMNKGSI 342

Query: 262 PFRLPTRSRKNIIALDISYNKLQG-HIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMN 320
            F+    +  ++  LD+S N L              +L  L ++FN     + ++F  + 
Sbjct: 343 SFKK--VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLE 399

Query: 321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNH 380
            L +LD  ++ L         +    L YL +S  + +         LT L  L + GN 
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 381 FIGDIPES-LSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQ 439
           F  +   +  +N ++L  L +S   +          +  L  + M  N+L     S + Q
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 440 LDYLEILDLSKNNIAGSLPS 459
           L  L  LD S N I  S   
Sbjct: 520 LYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  170 bits (432), Expect = 6e-47
 Identities = 100/467 (21%), Positives = 175/467 (37%), Gaps = 28/467 (5%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGNK 59
           S+ K +DLS N        S +  S L+ L L+   +E   +    G++ L +L L+GN 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
             S    S + L+SL  L  + T      +   +  L  L++L+++ N I +  +P  + 
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 120 GLRKLRFLDLSGLRIR--DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
            L  L  +DLS   I+    + +     +     +L +  N             + + L 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID---FIQDQAFQGIKLH 207

Query: 178 DLYIDRNDFIGSLPW-CLANLTSLRVLHVPDNQLTGN-----LSSSPLMHLTSIEVLLLS 231
           +L +  N    ++   CL NL  L V  +   +            S +  L  + +    
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 232 NNHFQI-PISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV 289
             +       +  F   + +     A  S+     +P   +     L I   +L+    +
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS--LSIIRCQLKQFPTL 325

Query: 290 EIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA-MGCFNLE 348
           +    LP L  L++T N   GSI      + SL YLDLS N L+       + +G  +L 
Sbjct: 326 D----LPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 349 YLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPES-LSNCSSLQGLYISDNDITG 407
           +L LS N     + +    L +L+ L+   +        S   +   L  L IS  +   
Sbjct: 380 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 408 SIPTWIGNISFLDAIIMPDNHLEGPIPSE-FCQLDYLEILDLSKNNI 453
                   ++ L+ + M  N  +    S  F     L  LDLSK  +
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  163 bits (414), Expect = 2e-44
 Identities = 80/442 (18%), Positives = 151/442 (34%), Gaps = 24/442 (5%)

Query: 1   LSNLKFLDLSHNSFNNSVL-SSLAGLSSLKNLSLAYNRLEGSINIEGMNM------LESL 53
           L  LK L+++HN  ++  L +  + L++L ++ L+YN ++     +   +        SL
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 54  DLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNL- 112
           D+S N     I         L +L L             L +L+ L    +   E  +  
Sbjct: 187 DMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 113 ----VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQ 168
                 P    GL  +   +       D S  +       ++  + L   +        +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI----KYLE 301

Query: 169 GLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVL 228
            + +    Q L I R   +   P    +L  L+ L +  N+ +    S   + L S+  L
Sbjct: 302 DVPKHFKWQSLSIIRCQ-LKQFP--TLDLPFLKSLTLTMNKGS---ISFKKVALPSLSYL 355

Query: 229 LLSNNHFQ-IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHI 287
            LS N               + L+    + + +          + +  LD  ++ L+   
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415

Query: 288 PVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNL 347
                  L  L +L I++          F  + SL  L ++ N        ++     NL
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 348 EYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITG 407
            +L LS   L+   +   + L +L+ LN+  N+ +       +   SL  L  S N I  
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 408 SIPTWIGNISFLDAIIMPDNHL 429
           S          L    + +N +
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (367), Expect = 5e-38
 Identities = 90/423 (21%), Positives = 161/423 (38%), Gaps = 33/423 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKN----LSLAYNRLEGSINIEGMNM-LESLDL 55
           L+NL  +DLS+N      ++ L  L         L ++ N ++   +     + L  L L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 56  SGNKFNSSILS-SLTALSSLRKLNLMATGFKGTFDVQELDSLS-------NLEELDMSDN 107
            GN  +S+I+   L  L+ L    L+   FK   +++  +           ++E  ++  
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 108 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 167
                     +  L  +  + L+G+ I+     L  +      ++L +      +  T  
Sbjct: 272 ND-FSDDIVKFHCLANVSAMSLAGVSIKY----LEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 168 QGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG-NLSSSPLMHLTSIE 226
                L  L+ L +  N   GS+ +    L SL  L +  N L+     S   +   S+ 
Sbjct: 327 -----LPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 227 VLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSG-PFRLPTRSRKNIIALDISYNKLQ 284
            L LS N   I      F    +L+     +++L          S + ++ LDISY   +
Sbjct: 380 HLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 285 GHIPVEIGKVLPNLGFLSITFNAFNGSIPSS-FGDMNSLIYLDLSNNQLTGEIPEHLAMG 343
                 I   L +L  L +  N+F  +  S+ F +  +L +LDLS  QL  +I   +   
Sbjct: 438 -IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDT 495

Query: 344 CFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDN 403
              L+ L +S+N+L     S  N L  L  L+   N              SL    +++N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 404 DIT 406
            + 
Sbjct: 556 SVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (307), Expect = 5e-30
 Identities = 65/404 (16%), Positives = 124/404 (30%), Gaps = 61/404 (15%)

Query: 97  SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK 156
           S+ + +D+S N +  L     +    +L++LDLS   I        +      L  L L 
Sbjct: 32  SSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIED--KAWHGLHHLSNLILT 88

Query: 157 SNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSS 216
            N       +      L  L++L            + +  L +L+ L+V  N +      
Sbjct: 89  GNPI--QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 217 SPLMHLTSIEVLLLSNNHFQ--IPISLEPFFN--YSKLKIFHANNSLS----GPFRLPTR 268
           +   +LT++  + LS N+ Q      L+         L +  + N +       F+    
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-- 204

Query: 269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGS----------------- 311
               +  L +  N    +I     + L  L    +    F                    
Sbjct: 205 ---KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 312 ---------------IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS 356
                              F  + ++  + L+   +   + +      F  + L +    
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDV--PKHFKWQSLSIIRCQ 318

Query: 357 LQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPT--WIG 414
           L+        +L  LK L L  N   G I        SL  L +S N ++ S        
Sbjct: 319 LKQFPT---LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 415 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
             + L  + +  N     + + F  L+ L+ LD   + +     
Sbjct: 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.0 bits (247), Expect = 2e-22
 Identities = 53/325 (16%), Positives = 101/325 (31%), Gaps = 23/325 (7%)

Query: 147 FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVP 206
             S K + L  N     +  +        LQ L + R +           L  L  L + 
Sbjct: 31  PSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 207 DNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRL 265
            N +    S      LTS+E L+          S  P      LK  + A+N +      
Sbjct: 89  GNPIQS-FSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 266 PTRSR-KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFN---GSIPSSFGDMNS 321
              S   N++ +D+SYN +Q  I V   + L     ++++ +        I         
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205

Query: 322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL------- 374
           L  L L  N  +  I +        L    L     + +   +    + ++ L       
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 375 -NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPI 433
             L   +   D        +++  + ++   I   +     +     ++ +    L+   
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFK-WQSLSIIRCQLKQ-- 321

Query: 434 PSEFCQLDYLEILDLSKNNIAGSLP 458
                 L +L+ L L+ N  + S  
Sbjct: 322 -FPTLDLPFLKSLTLTMNKGSISFK 345

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.0 bits (203), Expect = 8e-17
 Identities = 45/261 (17%), Positives = 84/261 (32%), Gaps = 17/261 (6%)

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRK 271
            LS  P    +S + + LS N  +I +    F N+S+L+    +   +            
Sbjct: 22  KLSKVPDDIPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH 80

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQ 331
           ++  L ++ N +Q          L +L  L               G + +L  L++++N 
Sbjct: 81  HLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 332 LTGEIPEHLAMGCFNLEYLLLSNNSLQG----QLFSKKNNLTKLKRLNLDGNHFIGDIPE 387
           +             NL ++ LS N +Q      L   + N      L++  N  I  I +
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQD 198

Query: 388 SLSNCSSLQGLYISDNDITGSIPTWIGN-------ISFLDAIIMPDNHLEGPIPSEFCQL 440
                  L  L +  N  + +I                +      + +LE   PS    L
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 441 DYL--EILDLSKNNIAGSLPS 459
             +  +   L+  N       
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIV 279

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 38/179 (21%), Positives = 61/179 (34%), Gaps = 30/179 (16%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335
                 KL   +P +I     +   + ++FN        SF + + L +LDLS  ++   
Sbjct: 16  YQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL 395
             +                             L  L  L L GN      P S S  +SL
Sbjct: 72  EDKAWH-------------------------GLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

Query: 396 QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG-PIPSEFCQLDYLEILDLSKNNI 453
           + L   +  +       IG +  L  + +  N +    +P+ F  L  L  +DLS N I
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 29/146 (19%)

Query: 310 GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLT 369
           GS+      + ++      + +L+ ++P+ +     + + + LS N L+       +N +
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFSNFS 56

Query: 370 KLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL 429
           +L+ L+L          ++      L  L ++ N I    P                   
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS----------------- 99

Query: 430 EGPIPSEFCQLDYLEILDLSKNNIAG 455
                  F  L  LE L   +  +A 
Sbjct: 100 -------FSGLTSLENLVAVETKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGN 58
           L  L+ L++SHN+      S    L SL  L  ++NR+E S          L   +L+ N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 59  KFNSS 63
                
Sbjct: 556 SVACI 560

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  170 bits (434), Expect = 1e-49
 Identities = 67/276 (24%), Positives = 120/276 (43%), Gaps = 14/276 (5%)

Query: 183 RNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSP-LMHLTSIEVLLLSN-NHF--QIP 238
              ++G L         +  L +    L         L +L  +  L +   N+    IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 239 ISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPN 297
            ++      ++L   +  + ++SG         K ++ LD SYN L G +P  I   LPN
Sbjct: 95  PAI---AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPN 150

Query: 298 LGFLSITFNAFNGSIPSSFGDMNSLI-YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS 356
           L  ++   N  +G+IP S+G  + L   + +S N+LTG+IP        NL ++ LS N 
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNM 208

Query: 357 LQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNI 416
           L+G       +    ++++L  N    D+   +    +L GL + +N I G++P  +  +
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 417 SFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN 452
            FL ++ +  N+L G IP     L   ++   + N 
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  155 bits (394), Expect = 7e-44
 Identities = 62/210 (29%), Positives = 92/210 (43%), Gaps = 7/210 (3%)

Query: 254 HANNSLSGPFRLPTRSRKNIIALDISYNKLQG--HIPVEIGKVLPNLGFLSIT-FNAFNG 310
             N +  G           +  LD+S   L     IP  +   LP L FL I   N   G
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVG 91

Query: 311 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTK 370
            IP +   +  L YL +++  ++G IP+ L+     L  L  S N+L G L    ++L  
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 371 LKRLNLDGNHFIGDIPESLSNCSSL-QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL 429
           L  +  DGN   G IP+S  + S L   + IS N +TG IP    N++ L  + +  N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209

Query: 430 EGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           EG     F      + + L+KN++A  L  
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  127 bits (322), Expect = 1e-33
 Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 15/266 (5%)

Query: 95  SLSNLEELDMSDNEID-NLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTL 153
               +  LD+S   +     +P     L  L FL + G+    G  +  +I     L  L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYL 106

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGN 213
           Y+   N +  +     L ++  L  L    N   G+LP  +++L +L  +    N+++G 
Sbjct: 107 YITHTNVSGAIPDF--LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 214 LSSSPLMHLTS-IEVLLLSNNHF--QIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSR 270
           +  S     +     + +S N    +IP +     N +   +  + N L G   +   S 
Sbjct: 165 IPDS-YGSFSKLFTSMTISRNRLTGKIPPTF---ANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN 330
           KN   + ++ N L   +  ++G    NL  L +  N   G++P     +  L  L++S N
Sbjct: 221 KNTQKIHLAKNSLAFDLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 331 QLTGEIPEHLAMGCFNLEYLLLSNNS 356
            L GEIP+   +     +    +NN 
Sbjct: 279 NLCGEIPQGGNLQ--RFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  123 bits (312), Expect = 3e-32
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 5/163 (3%)

Query: 301 LSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE--IPEHLAMGCFNLEYLLLSN-NSL 357
                  + G +  +      +  LDLS   L     IP  LA     L +L +   N+L
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNL 89

Query: 358 QGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNIS 417
            G +      LT+L  L +   +  G IP+ LS   +L  L  S N ++G++P  I ++ 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 418 FLDAIIMPDNHLEGPIPSEFCQLDYL-EILDLSKNNIAGSLPS 459
            L  I    N + G IP  +     L   + +S+N + G +P 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  123 bits (311), Expect = 5e-32
 Identities = 67/394 (17%), Positives = 116/394 (29%), Gaps = 118/394 (29%)

Query: 7   LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI----EGMNMLESLDLSG-NKFN 61
            D  + ++   +  +      + NL L+   L     I      +  L  L + G N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 62  SSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGL 121
             I  ++  L+ L  L +  T   G      L  +  L  LD S N +            
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNAL------------ 137

Query: 122 RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181
                                  G+ P                     +  L +L  +  
Sbjct: 138 ----------------------SGTLPP-------------------SISSLPNLVGITF 156

Query: 182 DRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF--QIPI 239
           D N   G++P    + + L                           + +S N    +IP 
Sbjct: 157 DGNRISGAIPDSYGSFSKL------------------------FTSMTISRNRLTGKIPP 192

Query: 240 SLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 299
           +                            +  N+  +D+S N L+G   V  G    N  
Sbjct: 193 TF---------------------------ANLNLAFVDLSRNMLEGDASVLFGS-DKNTQ 224

Query: 300 FLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG 359
            + +  N+    +    G   +L  LDL NN++ G +P+ L      L  L +S N+L G
Sbjct: 225 KIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCG 282

Query: 360 QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCS 393
           ++  +  NL +        N  +   P  L  C+
Sbjct: 283 EI-PQGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  107 bits (270), Expect = 2e-26
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 8/156 (5%)

Query: 311 SIPSSFGDMNSL----IYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKN 366
            I    G+  +L       D  N    G + +      + +  L LS  +L        +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 367 --NLTKLKRLNL-DGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAII 423
             NL  L  L +   N+ +G IP +++  + L  LYI+  +++G+IP ++  I  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 424 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
              N L G +P     L  L  +    N I+G++P 
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 92.6 bits (231), Expect = 4e-21
 Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 35/235 (14%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGN 58
           L+ L +L ++H + + ++   L+ + +L  L  +YN L G++  +I  +  L  +   GN
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
           + + +I  S  + S L                           + +S N +    +P  +
Sbjct: 160 RISGAIPDSYGSFSKL------------------------FTSMTISRNRLTG-KIPPTF 194

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
             L  L F+DLS   + +G       GS  + + ++L  N+ A  +     +    +L  
Sbjct: 195 ANL-NLAFVDLSRNML-EGD-ASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNG 248

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
           L +  N   G+LP  L  L  L  L+V  N L G +      +L   +V   +NN
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANN 301

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  170 bits (431), Expect = 6e-46
 Identities = 75/477 (15%), Positives = 146/477 (30%), Gaps = 45/477 (9%)

Query: 7   LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGNKFNSSI 64
            +   + + +     L     +  LSLA    +G +   I  +  L+ L    +    S 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 65  LSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKL 124
                   +           +  +    LD    L   D+  + I+      + + ++K 
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN---PEMKPIKKD 420

Query: 125 RFLDLSGLRIRDGSKVLHSI----GSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
             + L   +I + +  +  I         L+ +Y  ++ F             V  +D  
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFT-------YDNIAVDWEDAN 473

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
            D      +     +NL  L  + + +      L    L  L  ++ L ++ N       
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQ 532

Query: 241 L--------EPFFNYSKLKIFH-ANNSLSG-PFRLPTRSRKNIIALDISYNKLQGHIPVE 290
           L        +      K++IF+   N+L   P     +    +  LD  +NK++ H+   
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590

Query: 291 IGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG-CFNLEY 349
            G     L  L + +N             + +  L  S+N+L   IP        + +  
Sbjct: 591 FGT-NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648

Query: 350 LLLSNNSLQGQ-----LFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDND 404
           +  S N +  +                  + L  N       E  +  S +  + +S+N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 405 IT-------GSIPTWIGNISFLDAIIMPDNHLEG-PIPSEFCQLDYLEILDLSKNNI 453
           +T               N   L  I +  N L           L YL  +D+S N  
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  168 bits (428), Expect = 1e-45
 Identities = 74/487 (15%), Positives = 160/487 (32%), Gaps = 52/487 (10%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--------IEGMNMLES 52
              L   DL  ++ N      +  +     +SL   ++    N        I+ +  L+ 
Sbjct: 395 DQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 53  LDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNL 112
           +  + + F    ++     ++               +     +L +L ++++ +      
Sbjct: 453 IYFANSPFTYDNIAVDWEDANSDYAKQYEN------EELSWSNLKDLTDVELYNCPNMT- 505

Query: 113 VVPKDYRGLRKLRFLDLSGLRIRDGSKVLH-------SIGSFPSLKTLYLKSNNFAKTVT 165
            +P     L +L+ L+++  R    +++            + P ++  Y+  NN  +   
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFP 564

Query: 166 TTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSI 225
            +  L ++V L  L    N  +  L         L  L +  NQ+   +          +
Sbjct: 565 ASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV 621

Query: 226 EVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSG-----PFRLPTRSRKNIIALDIS 279
           E L  S+N  +   ++    +   +     + N +          +      N   + +S
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 280 YNKLQGHIPVEIGKVLPNLGFLSITFNAF-------NGSIPSSFGDMNSLIYLDLSNNQL 332
           YN++Q   P E+      +  + ++ N               ++ +   L  +DL  N+L
Sbjct: 682 YNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

Query: 333 TGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNL------DGNHFIGDIP 386
           T    +  A     L  + +S N       ++  N ++LK   +      +GN  +   P
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 387 ESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 446
             ++ C SL  L I  NDI          +  LD     DN       +  C      + 
Sbjct: 800 TGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIA---DNPNISIDVTSVCPYIEAGMY 856

Query: 447 DLSKNNI 453
            L  +  
Sbjct: 857 VLLYDKT 863

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  158 bits (401), Expect = 2e-43
 Identities = 98/455 (21%), Positives = 176/455 (38%), Gaps = 46/455 (10%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           L+      L   +  +    S   L  +  L      ++    +E +N L  ++ S N+ 
Sbjct: 23  LAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 80

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
               ++ L  L+ L  + +         D+  L +L+NL  L + +N+I ++      + 
Sbjct: 81  TD--ITPLKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQITDI---DPLKN 132

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
           L  L  L+LS   I D    + ++    SL+ L   +      VT  + L  L  L+ L 
Sbjct: 133 LTNLNRLELSSNTISD----ISALSGLTSLQQLSFGNQ-----VTDLKPLANLTTLERLD 183

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
           I  N  +  +   LA LT+L  L   +NQ++     +PL  LT+++ L L+ N  +    
Sbjct: 184 ISSNK-VSDIS-VLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLK---D 235

Query: 241 LEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 299
           +    + + L     ANN +S     P      +  L +  N++    P+     L  L 
Sbjct: 236 IGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLAG---LTALT 290

Query: 300 FLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP-EHLAMGCFNLEYLLLSNNSLQ 358
            L +  N      P    ++ +L YL L  N ++   P   L      L+ L   NN + 
Sbjct: 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT----KLQRLFFYNNKVS 344

Query: 359 GQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISF 418
               S   NLT +  L+   N  I D+   L+N + +  L ++D   T +   +  N+S 
Sbjct: 345 D--VSSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSI 400

Query: 419 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
            + +      L    P+           D++ N  
Sbjct: 401 PNTVKNVTGALI--APATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (369), Expect = 6e-39
 Identities = 93/438 (21%), Positives = 171/438 (39%), Gaps = 42/438 (9%)

Query: 17  SVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRK 76
           + + +   L+      L    +  +++   ++ + +L        S  +  +  L++L +
Sbjct: 15  NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQ 72

Query: 77  LNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD 136
           +N          D+  L +L+ L ++ M++N+I ++        L  L  L L   +I D
Sbjct: 73  INFSNNQLT---DITPLKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITD 126

Query: 137 GSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLAN 196
               +  + +  +L  L L SN     ++    L  L  LQ L    N      P  LAN
Sbjct: 127 ----IDPLKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFG-NQVTDLKP--LAN 175

Query: 197 LTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-A 255
           LT+L  L +  N+++     S L  LT++E L+ +NN       + P    + L      
Sbjct: 176 LTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLN 229

Query: 256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSS 315
            N L         S  N+  LD++ N++    P+     L  L  L +  N  +   P  
Sbjct: 230 GNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNISP-- 282

Query: 316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLN 375
              + +L  L+L+ NQL    P        NL YL L  N++     S  ++LTKL+RL 
Sbjct: 283 LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLF 337

Query: 376 LDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS 435
              N        SL+N +++  L    N I+   P  + N++ +  + + D        +
Sbjct: 338 FYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

Query: 436 EFCQLDYLEILDLSKNNI 453
               +     +      +
Sbjct: 394 YKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (317), Expect = 7e-32
 Identities = 87/434 (20%), Positives = 151/434 (34%), Gaps = 83/434 (19%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           L+NL  L L +N   +  +  L  L++L  L L+ N +     + G+  L+ L       
Sbjct: 111 LTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV- 167

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
                                       D++ L +L+ LE LD+S N++ ++ V      
Sbjct: 168 ---------------------------TDLKPLANLTTLERLDISSNKVSDISVLA---K 197

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
           L  L  L  +  +I D    +  +G   +L  L L  N     +     L  L +L DL 
Sbjct: 198 LTNLESLIATNNQISD----ITPLGILTNLDELSLNGNQ----LKDIGTLASLTNLTDLD 249

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
           +  N      P  L+ LT L  L +  NQ++   + SPL  LT++  L L+ N  +    
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLE---D 301

Query: 241 LEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF 300
           + P  N   L                         L + +N +    PV     L  L  
Sbjct: 302 ISPISNLKNLTY-----------------------LTLYFNNISDISPVS---SLTKLQR 335

Query: 301 LSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ 360
           L    N  +    SS  ++ ++ +L   +NQ++   P         +  L L++ +    
Sbjct: 336 LFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQAWTNA 390

Query: 361 LFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLD 420
             + K N++    +       I   P ++S+  S     I+ N  +          S   
Sbjct: 391 PVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPV 447

Query: 421 AIIMPDNHLEGPIP 434
            I        G + 
Sbjct: 448 TIGKGTTTFSGTVT 461

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (372), Expect = 2e-40
 Identities = 89/403 (22%), Positives = 147/403 (36%), Gaps = 58/403 (14%)

Query: 4   LKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSS 63
              L       N   +   A L+      L    +   +  E +  +  L ++G K  S 
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVAS- 58

Query: 64  ILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRK 123
            +  +  L++L  LNL         D+  L +L  L  L +  N+I ++      + L  
Sbjct: 59  -IQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKITDI---SALQNLTN 111

Query: 124 LRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDR 183
           LR L L+   I D    +  + +   + +L L +N+    ++    L  +  L  L +  
Sbjct: 112 LRELYLNEDNISD----ISPLANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTE 164

Query: 184 NDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEP 243
           +      P  +ANLT L  L +  NQ+      SPL  LTS+       N       + P
Sbjct: 165 SKVKDVTP--IANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQIT---DITP 216

Query: 244 FFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSI 303
             N ++L                         L I  NK+    P+     L  L +L I
Sbjct: 217 VANMTRLNS-----------------------LKIGNNKITDLSPLAN---LSQLTWLEI 250

Query: 304 TFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFS 363
             N  +    ++  D+  L  L++ +NQ++      L      L  L L+NN L  +   
Sbjct: 251 GTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLN-NLSQLNSLFLNNNQLGNEDME 305

Query: 364 KKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT 406
               LT L  L L  NH I DI   L++ S +     ++  I 
Sbjct: 306 VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (321), Expect = 4e-33
 Identities = 83/409 (20%), Positives = 156/409 (38%), Gaps = 82/409 (20%)

Query: 50  LESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEI 109
             +L       N   +     L+   +  L         DV   + L ++ +L ++  ++
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVT---DVVTQEELESITKLVVAGEKV 56

Query: 110 DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQG 169
            ++   +    L  L +L+L+G +I D    +  + +   L  LY+ +N     +T    
Sbjct: 57  ASI---QGIEYLTNLEYLNLNGNQITD----ISPLSNLVKLTNLYIGTNK----ITDISA 105

Query: 170 LCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLL 229
           L  L +L++LY++ ++     P  LANLT +  L++  N    +LS  PL ++T +  L 
Sbjct: 106 LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLT 161

Query: 230 LSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV 289
           ++ +  +    + P  N + L                         L ++YN+++   P 
Sbjct: 162 VTESKVK---DVTPIANLTDLYS-----------------------LSLNYNQIEDISP- 194

Query: 290 EIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 349
                                        + SL Y     NQ+T   P         L  
Sbjct: 195 --------------------------LASLTSLHYFTAYVNQITDITPVA---NMTRLNS 225

Query: 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI 409
           L + NN +     S   NL++L  L +  N  I DI  ++ + + L+ L +  N I+   
Sbjct: 226 LKIGNNKITD--LSPLANLSQLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSNQISDIS 281

Query: 410 PTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
              + N+S L+++ + +N L          L  L  L LS+N+I    P
Sbjct: 282 V--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (287), Expect = 2e-28
 Identities = 64/285 (22%), Positives = 123/285 (43%), Gaps = 26/285 (9%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           L  L  L +  N    + +S+L  L++L+ L L  + +     +  +  + SL+L  N  
Sbjct: 87  LVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANH- 143

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
           N S LS L+ ++ L  L +  +  K   DV  + +L++L  L ++ N+I+++        
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQIEDI---SPLAS 197

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
           L  L +      +I D    +  + +   L +L + +N     +T    L  L  L  L 
Sbjct: 198 LTSLHYFTAYVNQITD----ITPVANMTRLNSLKIGNNK----ITDLSPLANLSQLTWLE 249

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
           I  N  I  +   + +LT L++L+V  NQ++     S L +L+ +  L L+NN       
Sbjct: 250 IGTN-QISDIN-AVKDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGN-ED 303

Query: 241 LEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQ 284
           +E     + L     + N ++     P  S   + + D +   ++
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (280), Expect = 2e-27
 Identities = 71/362 (19%), Positives = 130/362 (35%), Gaps = 59/362 (16%)

Query: 99  LEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSN 158
              L      I+ +        L +     L    + D    + +     S+  L +   
Sbjct: 2   AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTD----VVTQEELESITKLVVAGE 54

Query: 159 NFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSP 218
                V + QG+  L +L+ L ++ N      P  L+NL  L  L++  N++T     S 
Sbjct: 55  K----VASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT---DISA 105

Query: 219 LMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDI 278
           L +LT++  L L+ ++      + P  N +K+                         L++
Sbjct: 106 LQNLTNLRELYLNEDNIS---DISPLANLTKMYS-----------------------LNL 139

Query: 279 SYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP- 337
             N     +   +   +  L +L++T +      P    ++  L  L L+ NQ+    P 
Sbjct: 140 GANHNLSDLS-PLSN-MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPL 195

Query: 338 EHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQG 397
             L     +L Y     N +     +   N+T+L  L +  N  I D+   L+N S L  
Sbjct: 196 ASLT----SLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNK-ITDLS-PLANLSQLTW 247

Query: 398 LYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSL 457
           L I  N I+  I   + +++ L  + +  N +     S    L  L  L L+ N +    
Sbjct: 248 LEIGTNQIS-DINA-VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNED 303

Query: 458 PS 459
             
Sbjct: 304 ME 305

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  153 bits (387), Expect = 3e-40
 Identities = 98/503 (19%), Positives = 173/503 (34%), Gaps = 59/503 (11%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN---IEGMNMLESLDLSG 57
           L+  + L LS N       SS   L  L+ L L       +I+      +  L  LDL  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTF-DVQELDSLSNLEELDMSDNEIDNLVVPK 116
           +K       +   L  L +L L   G            +L  L  LD+S N+I +L +  
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 117 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLC----E 172
            +  L  L+ +D S  +I    +         +L    L +N+    V+   G C     
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 173 LVHLQDLYIDRNDFIGSLPWCLAN------------LTSLRVLHVPDNQLTGNLSSSPLM 220
            + L+ L +  N +   +    +N               +       + +  +   +   
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFA 261

Query: 221 HL--TSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALD 277
            L  +S+  L LS+      ++   F     LK+ + A N ++           N+  L+
Sbjct: 262 GLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 278 ISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP 337
           +SYN L   +       LP + ++ +  N        +F  +  L  LDL +N LT    
Sbjct: 321 LSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-- 377

Query: 338 EHLAMGCFNLEYLLLSNN---SLQGQLFSKKN------------------NLTKLKRLNL 376
                   ++  + LS N   +L     +                      +  L+ L L
Sbjct: 378 ----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 377 DGNHFIGDIPESL-SNCSSLQGLYISDNDITGSIPTWIGNISF-----LDAIIMPDNHLE 430
           + N F     +   S   SL+ L++ +N +  +  T +    F     L  + +  N+L 
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

Query: 431 GPIPSEFCQLDYLEILDLSKNNI 453
              P  F  L  L  L L+ N +
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  142 bits (360), Expect = 9e-37
 Identities = 95/493 (19%), Positives = 170/493 (34%), Gaps = 54/493 (10%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI----NIEGMNMLESLDLS 56
           L NL+ LDL  +        +  GL  L  L L +  L  ++        +  L  LDLS
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 57  GNKFNS-SILSSLTALSSLRKLNLMATGFKGTFDVQELDSLS--NLEELDMSDNEIDNLV 113
            N+  S  +  S   L+SL+ ++  +          EL+ L    L    ++ N + + V
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 114 VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---------------PSLKTLYLKSN 158
                + +   R + L  L +      +   G+F                 +       +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 159 NFAK-TVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSS 217
           N       T  GL     ++ L +               L  L+VL++  N++   ++  
Sbjct: 251 NIKDPDQNTFAGLARS-SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADE 308

Query: 218 PLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIAL 276
               L +++VL LS N     +    F+   K+       N ++       +  + +  L
Sbjct: 309 AFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 277 DISYNKLQ--GHIPVEIGKVLPNLGFLSITFNAFNG-------------SIPSSFGDMNS 321
           D+  N L     IP      L     +++                     I      +  
Sbjct: 368 DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427

Query: 322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKN-----NLTKLKRLNL 376
           L  L L+ N+ +    +       +LE L L  N LQ    ++        L+ L+ L L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 377 DGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWI--GNISFLDAIIMPDNHLEGPIP 434
           + N+     P   S+ ++L+GL ++ N +T  +       N+  LD   +  N L  P P
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILD---ISRNQLLAPNP 543

Query: 435 SEFCQLDYLEILD 447
             F  L  L+I  
Sbjct: 544 DVFVSLSVLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (358), Expect = 2e-36
 Identities = 85/434 (19%), Positives = 149/434 (34%), Gaps = 41/434 (9%)

Query: 45  EGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDM 104
           + +N  E L LS N   +   SS   L  L+ L L +     T D +   +L NL  LD+
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 105 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTV 164
             ++I  L  P  ++GL  L  L L    + D         +  +L  L L  N   +++
Sbjct: 81  GSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI-RSL 138

Query: 165 TTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLT--SLRVLHVPDNQLTGNLSSSPLMHL 222
                  +L  L+ +    N         L  L   +L    +  N L   +S      +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 223 TSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNK 282
                ++L              +       F  +N++S           +I+     ++ 
Sbjct: 199 NPFRNMVLEILDVS-----GNGWTVDITGNF--SNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 283 LQGHIPVEI--GKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHL 340
           ++         G    ++  L ++           F  +  L  L+L+ N++  +I +  
Sbjct: 252 IK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEA 309

Query: 341 AMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYI 400
             G  NL+ L LS N L     S    L K+  ++L  NH      ++      LQ L +
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369

Query: 401 SDNDITGSIPTWIGNISFLDAIIMPDNHLEG---------------------PIPSEFCQ 439
            DN +T      I  I  +  I +  N L                        I     +
Sbjct: 370 RDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424

Query: 440 LDYLEILDLSKNNI 453
           + +L+IL L++N  
Sbjct: 425 VPHLQILILNQNRF 438

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  100 bits (250), Expect = 1e-22
 Identities = 50/251 (19%), Positives = 90/251 (35%), Gaps = 20/251 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           L  + ++DL  N        +   L  L+ L L  N L     I  +  +  + LSGNK 
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT---TIHFIPSIPDIFLSGNK- 392

Query: 61  NSSILSSLTALS-SLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
               L +L  ++ +   ++L     +    +  L  + +L+ L ++ N   +    +   
Sbjct: 393 ----LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 120 GLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKTVTTTQGLCELVHL 176
               L  L L    ++   +       F     L+ LYL  N              L  L
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL--NSLPPGVFSHLTAL 506

Query: 177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236
           + L ++ N  +  L        +L +L +  NQL     +       S+ VL +++N F 
Sbjct: 507 RGLSLNSNR-LTVLSHN-DLPANLEILDISRNQLL----APNPDVFVSLSVLDITHNKFI 560

Query: 237 IPISLEPFFNY 247
               L  F N+
Sbjct: 561 CECELSTFINW 571

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 83.7 bits (207), Expect = 3e-17
 Identities = 41/200 (20%), Positives = 73/200 (36%), Gaps = 14/200 (7%)

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSI-PSSFGDMNSLIYLDLSNN 330
               L +S+N ++  +       L  L  L +       +I   +F ++ +L  LDL ++
Sbjct: 25  TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK--NNLTKLKRLNLDGNHFIG-DIPE 387
           ++   +      G F+L  L L    L   +       NL  L RL+L  N      +  
Sbjct: 84  KIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 388 SLSNCSSLQGLYISDNDITGSIPTWIGNISF--LDAIIMPDNHLEGPIPSEFCQLD---- 441
           S    +SL+ +  S N I       +  +    L    +  N L   +  ++ +      
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 442 --YLEILDLSKNNIAGSLPS 459
              LEILD+S N     +  
Sbjct: 203 NMVLEILDVSGNGWTVDITG 222

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 16/186 (8%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335
               +  L   +P    +VL     L ++FN       SSF  +  L  L+L +      
Sbjct: 9   AFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 336 IPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKNNLTKLKRLNLDGNHFIGDI--PESLS 390
           I +       NL  L L ++ +       F     L  L  L L        +       
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ---GLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 391 NCSSLQGLYISDNDITG-SIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLD--YLEILD 447
           N  +L  L +S N I    +    G ++ L +I    N +      E   L    L    
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 448 LSKNNI 453
           L+ N++
Sbjct: 181 LAANSL 186

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  148 bits (376), Expect = 2e-39
 Identities = 103/471 (21%), Positives = 177/471 (37%), Gaps = 33/471 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGN 58
              L+ LDLS          +   LS L  L L  N ++        G++ L+ L     
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
              S     +  L +L++LN+     +     +   +L+NLE LD+S N+I ++    D 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDL 169

Query: 119 RGLRKLRF----LDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELV 174
           R L ++      LDLS   +   + +         L  L L  NNF         +  L 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPM---NFIQPGAFKEIRLHKLTL-RNNFDSLNVMKTCIQGLA 225

Query: 175 HLQDLYIDRNDFIGSLPW------CLANLTSLRVLHVPDNQLTGNLSSSPLM--HLTSIE 226
            L+   +   +F             L  L +L +       L   L     +   LT++ 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 227 VLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGH 286
              L +   +        F +  L++   N       + PT   K++  L  + NK    
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELV--NCKFG---QFPTLKLKSLKRLTFTSNKGGNA 340

Query: 287 IPVEIGKVLPNLGFLSITFNAFN--GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 344
                   LP+L FL ++ N  +  G    S     SL YLDLS N +   +  +  +G 
Sbjct: 341 FS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF-LGL 395

Query: 345 FNLEYLLLSNNSLQG-QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDN 403
             LE+L   +++L+    FS   +L  L  L++   H         +  SSL+ L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 404 DITGSIPTWI-GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
               +    I   +  L  + +    LE   P+ F  L  L++L+++ N +
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  139 bits (352), Expect = 4e-36
 Identities = 81/441 (18%), Positives = 150/441 (34%), Gaps = 35/441 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRL---EGSINIEGMNMLESLDLSG 57
           LS+L+ L     +  +     +  L +LK L++A+N +   +       +  LE LDLS 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 58  NKFNSSILSSLTALSSLRKLNL---MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVV 114
           NK  S   + L  L  +  LNL   ++              +  L +L + +N     V+
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVM 217

Query: 115 PKDYRGLRKLRFLDLSGLRIRDGSKVLH-SIGSFPSLKTLYLKSNNFAK----TVTTTQG 169
               +GL  L    L     R+   +      +   L  L ++    A            
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 170 LCELVHLQDLYIDRNDFIGSLPW-CLANLTSLRVLHVPDNQLTGN--------------- 213
              L ++    +          +        L +++    Q                   
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337

Query: 214 LSSSPLMHLTSIEVLLLSNNHFQ-IPISLEPFFNYSKLKIFH-ANNSLSGPFRLPT--RS 269
            ++   + L S+E L LS N         +  F  + LK    + N +     + +    
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLG 394

Query: 270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSN 329
            + +  LD  ++ L+      +   L NL +L I+      +    F  ++SL  L ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 330 NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESL 389
           N         +     NL +L LS   L+    +  N+L+ L+ LN+  N          
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 390 SNCSSLQGLYISDNDITGSIP 410
              +SLQ +++  N    S P
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (263), Expect = 2e-24
 Identities = 72/393 (18%), Positives = 132/393 (33%), Gaps = 48/393 (12%)

Query: 97  SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK 156
            + + LD+S N + +L     +    +L+ LDLS   I+       +  S   L TL L 
Sbjct: 28  FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILT 84

Query: 157 SNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSS 216
            N              L  LQ L     +      + + +L +L+ L+V  N +      
Sbjct: 85  GNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 217 SPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLS---------GPFRLPT 267
               +LT++E L LS+N  Q  I         ++ + + +  LS         G F+   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200

Query: 268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMN------- 320
                +  L +  N    ++     + L  L    +    F         D +       
Sbjct: 201 ----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 321 -SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQL-FSKKNNLTKLKRLNLDG 378
            ++    L+      +    L     N+    L + +++    FS       L+ +N   
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 379 NHFIGDIPESL----------------SNCSSLQGLYISDNDIT--GSIPTWIGNISFLD 420
             F     +SL                 +  SL+ L +S N ++  G         + L 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 421 AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
            + +  N +   + S F  L+ LE LD   +N+
Sbjct: 377 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.8 bits (205), Expect = 4e-17
 Identities = 56/321 (17%), Positives = 108/321 (33%), Gaps = 24/321 (7%)

Query: 147 FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVP 206
             S K L L  N        +        LQ L + R +          +L+ L  L + 
Sbjct: 27  PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 207 DNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSL-SGPFR 264
            N +  +L+      L+S++ L+    +    +   P  +   LK  + A+N + S    
Sbjct: 85  GNPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 265 LPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFN---GSIPSSFGDMNS 321
               +  N+  LD+S NK+Q  I     +VL  +  L+++ +        I         
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL------SNNSLQGQLFSKKNNLTKLKRLN 375
           L  L L NN  +  + +    G   LE   L      +  +L+    S    L  L    
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 376 LDGNH---FIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGP 432
               +   ++ DI +  +  +++    +    I   +  +  N      + + +      
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG-WQHLELVNCKFGQF 319

Query: 433 IPSEFCQLDYLEILDLSKNNI 453
                 +L  L+ L  + N  
Sbjct: 320 ---PTLKLKSLKRLTFTSNKG 337

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 46/253 (18%), Positives = 91/253 (35%), Gaps = 15/253 (5%)

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRK 271
           N    P     S + L LS N  +  +    FF++ +L++   +   +        +S  
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQ 331
           ++  L ++ N +Q  + +     L +L  L               G + +L  L++++N 
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 332 LTGEIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKNNLTKLK-RLNLDGNHFIGDIPE 387
           +             NLE+L LS+N +Q          + +  L   L+L  N  +  I  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQP 194

Query: 388 SLSNCSSLQGLYISDNDITGSIP-TWIGNISFLD------AIIMPDNHLEGPIPSEFCQL 440
                  L  L + +N  + ++  T I  ++ L+           + +LE    S    L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 441 DYLEILDLSKNNI 453
             L I +     +
Sbjct: 255 CNLTIEEFRLAYL 267

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 326 DLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDI 385
                    +IP++L     + + L LS N L+        +  +L+ L+L         
Sbjct: 13  QCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 386 PESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI 445
             +  + S L  L ++ N I          +S L  ++  + +L          L  L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 446 LDLSKNNI 453
           L+++ N I
Sbjct: 129 LNVAHNLI 136

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (344), Expect = 3e-35
 Identities = 95/463 (20%), Positives = 175/463 (37%), Gaps = 34/463 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE---GMNMLESLDLSG 57
            + +K LDLS N         L   ++L+ L L  +R+  +I  +    +  LE LDLS 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
           N  +S   S    LSSL+ LNLM   ++         +L+NL+ L + + E  + +   D
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
           + GL  L  L++  L +R+      S+ S   +  L L  +  A  +        L  ++
Sbjct: 144 FAGLTSLNELEIKALSLRNYQS--QSLKSIRDIHHLTLHLSESAFLLEIFAD--ILSSVR 199

Query: 178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQI 237
            L +   +        L        +     + +  L+      L  +   +L  +  + 
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEF 258

Query: 238 PISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPN 297
                     + L  F+  +       L       I  L I    L  +    +  +L  
Sbjct: 259 DD-----CTLNGLGDFN-PSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEK 311

Query: 298 LGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM--GCFNLEYLLLSNN 355
           +  +++  +       S    + SL +LDLS N +  E  ++ A      +L+ L+LS N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 356 SLQ-----GQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP 410
            L+     G++      L  L  L++  N     +P+S      ++ L +S   I     
Sbjct: 372 HLRSMQKTGEILL---TLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKT 427

Query: 411 TWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
                +  LD   + +N+L+         L  L+ L +S+N +
Sbjct: 428 CIPQTLEVLD---VSNNNLDS-FSLF---LPRLQELYISRNKL 463

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (344), Expect = 4e-35
 Identities = 86/476 (18%), Positives = 170/476 (35%), Gaps = 38/476 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGN 58
            +NL+ L L  +  N     +   L SL++L L+ N L    S     ++ L+ L+L GN
Sbjct: 49  CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108

Query: 59  KFNS-SILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
            + +  + S    L++L+ L +            +   L++L EL++    + N    + 
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQS 167

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK------TVTTTQGLC 171
            + +R +  L L         ++        S++ L L+  N A+       V       
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFAD--ILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225

Query: 172 ELVHLQDLYIDRNDF--IGSLPWCLANLTSLRVLHVPDNQLT-------GNLSSSPLMHL 222
           + +  +   +    F  +  L   +  L+ +       N L          +S    +  
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285

Query: 223 TSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYN 281
            +I  L +   +         +    K+K     N+ +       ++  K++  LD+S N
Sbjct: 286 VTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 282 KLQGHIPVEIG--KVLPNLGFLSITFNAFN--GSIPSSFGDMNSLIYLDLSNNQLTGEIP 337
            +              P+L  L ++ N              + +L  LD+S N     +P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403

Query: 338 EHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQG 397
           +        + +L LS+  ++     K      L+ L++  N+ +      L     LQ 
Sbjct: 404 DSCQ-WPEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVSNNN-LDSFSLFLPR---LQE 455

Query: 398 LYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
           LYIS N +  ++P        L  + +  N L+      F +L  L+ + L  N  
Sbjct: 456 LYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (256), Expect = 2e-23
 Identities = 66/379 (17%), Positives = 135/379 (35%), Gaps = 36/379 (9%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI--EGMNMLESLDLSGN 58
           L++L  L++   S  N    SL  +  + +L+L  +     + I  + ++ +  L+L   
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 59  K---FNSSILSSLTALSSLRKLNLMATGFKG------TFDVQELDSLSNLEELDMSDNEI 109
               F  S L      S ++KL    +             ++ +  LS +E  D + N +
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 110 DNLVVPKD--YRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKTV 164
            +    +      L K+  + +  L I            +     +K + ++++     +
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV--FL 324

Query: 165 TTTQGLCELVHLQDLYIDRN---DFIGSLPWCLANLTSLRVLHVPDNQLTG-NLSSSPLM 220
                   L  L+ L +  N   +       C     SL+ L +  N L     +   L+
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 221 HLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDIS 279
            L ++  L +S N        +      K++  + ++  +     + T   + +  LD+S
Sbjct: 385 TLKNLTSLDISRN--TFHPMPDSCQWPEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVS 439

Query: 280 YNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEH 339
            N L           LP L  L I+ N       +S      L+ + +S NQL   +P+ 
Sbjct: 440 NNNLD-----SFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLK-SVPDG 491

Query: 340 LAMGCFNLEYLLLSNNSLQ 358
           +     +L+ + L  N   
Sbjct: 492 IFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 40/243 (16%), Positives = 86/243 (35%), Gaps = 4/243 (1%)

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRK 271
           + +S P     +++ L LS N     I        + L++    ++ ++        S  
Sbjct: 16  SFTSIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG-SIPSSFGDMNSLIYLDLSNN 330
           ++  LD+S N L   +       L +L +L++  N +    + S F ++ +L  L + N 
Sbjct: 75  SLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLS 390
           +   EI      G  +L  L +   SL+        ++  +  L L  +     +     
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 391 NCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK 450
             SS++ L + D ++     + +        +              F +L  L    L  
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 451 NNI 453
           + +
Sbjct: 254 SEV 256

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 7/180 (3%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335
            D         IP  +      +  L ++FN              +L  L L ++++   
Sbjct: 10  CDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-T 64

Query: 336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIG-DIPESLSNCSS 394
           I         +LE+L LS+N L     S    L+ LK LNL GN +    +     N ++
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 395 LQGLYISDNDITGSIPTW-IGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
           LQ L I + +    I       ++ L+ + +    L          +  +  L L  +  
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  129 bits (326), Expect = 4e-33
 Identities = 82/421 (19%), Positives = 144/421 (34%), Gaps = 64/421 (15%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE---GMNMLESLDLSGN 58
           +++ ++DLS NS      +S + L  L+ L +        I      G++ L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
           +           L +            G F     + L+NLE L ++   +D  V+  ++
Sbjct: 90  Q--------FLQLET------------GAF-----NGLANLEVLTLTQCNLDGAVLSGNF 124

Query: 119 -RGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNN--------FAKTVTT 166
            + L  L  L L    I    K +     F        L L  N                
Sbjct: 125 FKPLTSLEMLVLRDNNI----KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180

Query: 167 TQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIE 226
              L  L  +    ++               TS+  L +  N    +++      +   +
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240

Query: 227 VLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGH 286
           +  L  ++     S     N+        N +  G      ++       D+S +K+   
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPD----NFTFKGLEASGVKT------CDLSKSKIF-A 289

Query: 287 IPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN 346
           +   +     +L  L++  N  N    ++F  +  L+ L+LS N L   I   +      
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDK 348

Query: 347 LEYLLLSNN---SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPES-LSNCSSLQGLYISD 402
           LE L LS N   +L  Q F     L  LK L LD N  +  +P+      +SLQ +++  
Sbjct: 349 LEVLDLSYNHIRALGDQSFLG---LPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 404

Query: 403 N 403
           N
Sbjct: 405 N 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 69/374 (18%), Positives = 122/374 (32%), Gaps = 83/374 (22%)

Query: 1   LSNLKFLDLSHNSFNNSVLS--SLAGLSSLKNLSLAYNRLEGSINIEG----MNMLESLD 54
           L+NL+ L L+  + + +VLS      L+SL+ L L  N ++  I        M     LD
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLD 160

Query: 55  LSGNKFNSSILSSLTALSSLRKLNL---------MATGFKGTFDVQELDSLSNLEELDMS 105
           L+ NK  S     L          L         M   + G          +++  LD+S
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 106 DNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVT 165
            N     +  + +  +   +   L              I S            NF     
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSL--------------ILSNSYNMGSSFGHTNFKDPDN 266

Query: 166 TTQGLCELVHLQDLYIDRNDFIGSLP-WCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTS 224
            T    E   ++   + ++  I +L     ++ T L  L +  N++   +  +    LT 
Sbjct: 267 FTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTH 324

Query: 225 IEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQ 284
           +  L LS N      S++         +F           L       +  LD+SYN ++
Sbjct: 325 LLKLNLSQNFLG---SIDSR-------MFE---------NLD-----KLEVLDLSYNHIR 360

Query: 285 GHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 344
                            ++   +F G        + +L  L L  NQL   +P+ +    
Sbjct: 361 -----------------ALGDQSFLG--------LPNLKELALDTNQLK-SVPDGIFDRL 394

Query: 345 FNLEYLLLSNNSLQ 358
            +L+ + L  N   
Sbjct: 395 TSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.6 bits (186), Expect = 6e-15
 Identities = 69/353 (19%), Positives = 129/353 (36%), Gaps = 62/353 (17%)

Query: 138 SKVLHSIGSFP-SLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CLA 195
           ++ LH +   P  +  + L  N+ A+   T+     L  LQ L +++      +      
Sbjct: 19  NRGLHQVPELPAHVNYVDLSLNSIAELNETS--FSRLQDLQFLKVEQQTPGLVIRNNTFR 76

Query: 196 NLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ-IPISLEPFFNYSKLKIFH 254
            L+SL +L +  NQ    L +     L ++EVL L+  +     +S   F   + L++  
Sbjct: 77  GLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 255 -ANNSLS--GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF----------L 301
             +N++    P       R     LD+++NK++  I  E         F           
Sbjct: 136 LRDNNIKKIQPASFFLNMR-RFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQ 193

Query: 302 SITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN--LEYLLLSNNSLQG 359
            +           +     S+  LDLS N     + +          ++ L+LSN+   G
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 360 QLFSKKN------------NLTKLKRLNLDGNHFIGDIPESL-SNCSSLQGLYISDNDIT 406
             F   N              + +K  +L  +  I  + +S+ S+ + L+ L ++ N+I 
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEIN 312

Query: 407 GSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
             I                         + F  L +L  L+LS+N + GS+ S
Sbjct: 313 -KID-----------------------DNAFWGLTHLLKLNLSQNFL-GSIDS 340

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (322), Expect = 2e-32
 Identities = 60/383 (15%), Positives = 128/383 (33%), Gaps = 25/383 (6%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
             N+K LDLS N  +    + LA  + L+ L+L+ N L  ++++E ++ L +LDL+ N  
Sbjct: 33  AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY- 91

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
               +  L    S+  L+                     + + +++N+I  L    D   
Sbjct: 92  ----VQELLVGPSIETLHAANNNISRV----SCSRGQGKKNIYLANNKITML-RDLDEGC 142

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
             ++++LDL    I   +       S  +L+ L L+ N         +G      L+ L 
Sbjct: 143 RSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFI----YDVKGQVVFAKLKTLD 197

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
           +  N  +  +     +   +  + + +N+L   +  + L    ++E   L  N F     
Sbjct: 198 LSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTL 254

Query: 241 LEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF 300
            + F    +++   A  ++                        +  +P      L  L  
Sbjct: 255 RDFFSKNQRVQTV-AKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKR 312

Query: 301 LSITFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS 356
                 +  GS    +     +      +D    Q    + + + +       L     +
Sbjct: 313 KEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKA 371

Query: 357 LQGQLFSKKNNLTKLKRLNLDGN 379
           L  Q+ + +    +L        
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (271), Expect = 9e-26
 Identities = 59/414 (14%), Positives = 127/414 (30%), Gaps = 49/414 (11%)

Query: 44  IEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELD 103
            +  N  +   ++ +    ++ S   +  ++++L+L            +L   + LE L+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLN 64

Query: 104 MSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKT 163
           +S N +       D   L  LR LDL+   ++        +   PS++TL+  +NN ++ 
Sbjct: 65  LSSNVLYET---LDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANNNISRV 114

Query: 164 VTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLT 223
             +          +++Y+  N             + ++ L +  N++     +       
Sbjct: 115 SCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 224 SIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKL 283
           ++E L L  N       ++    ++KLK                        LD+S NKL
Sbjct: 170 TLEHLNLQYNFIY---DVKGQVVFAKLKT-----------------------LDLSSNKL 203

Query: 284 QGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG 343
              +  E       + ++S+  N     I  +     +L + DL  N             
Sbjct: 204 A-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 344 CFNLEYLLL-SNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSN--CSSLQGLYI 400
              ++ +   +   L GQ   +    T                 + L          L  
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320

Query: 401 SDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 454
             ++    +     N +    I          I     +      L+  K  + 
Sbjct: 321 QGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.1 bits (226), Expect = 6e-20
 Identities = 47/284 (16%), Positives = 95/284 (33%), Gaps = 31/284 (10%)

Query: 189 SLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYS 248
           ++     N    ++  V D+ L     +S      +++ L LS N     IS      ++
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFT 58

Query: 249 KLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQ------------------GHIPV 289
           KL++ + ++N L     L   S   +  LD++ N +Q                    +  
Sbjct: 59  KLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC 116

Query: 290 EIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 349
                      + +  N          G  + + YLDL  N++       LA     LE+
Sbjct: 117 SR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI 409
           L L  N +       +    KLK L+L  N  +  +     + + +  + + +N +   I
Sbjct: 174 LNLQYNFIYD--VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 410 PTWIGNISFLDAIIMPDNHLE-GPIPSEFCQLDYLEILDLSKNN 452
              +     L+   +  N    G +   F +   ++ +      
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 11/164 (6%)

Query: 290 EIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 349
           EI +         +T ++   ++ S      ++  LDLS N L+      LA     LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI 409
           L LS+N L         +L+ L+ L+L+ N+      + L    S++ L+ ++N+I+  +
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 410 PTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
                       I + +N +      +      ++ LDL  N I
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 12/69 (17%), Positives = 30/69 (43%)

Query: 385 IPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 444
           I E   N +  +   ++D+ +  ++ +   +   +  + +  N L     ++      LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 445 ILDLSKNNI 453
           +L+LS N +
Sbjct: 62  LLNLSSNVL 70

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (291), Expect = 2e-28
 Identities = 73/365 (20%), Positives = 127/365 (34%), Gaps = 72/365 (19%)

Query: 97  SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 153
           +    LD+  N I  L    ++     L  L+L+   +      +   G+F    +L+TL
Sbjct: 32  TETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSA----VEP-GAFNNLFNLRTL 85

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CLANLTSLRVLHVPDNQLTG 212
            L+SN     +        L +L  L I  N  I  L      +L +L+ L V DN L  
Sbjct: 86  GLRSNRL--KLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLV- 141

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKN 272
            +S      L S+E L L   +    I  E   +   L +                    
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIV-------------------- 180

Query: 273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332
              L + +  +   I     K L  L  L I+   +  ++  +     +L  L +++  L
Sbjct: 181 ---LRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 333 TGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPE-S 388
           T  +P         L +L LS N   +++G +      L +L+ + L G   +  +   +
Sbjct: 237 T-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH---ELLRLQEIQLVGGQ-LAVVEPYA 291

Query: 389 LSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDL 448
               + L+ L +S N +T ++                         S F  +  LE L L
Sbjct: 292 FRGLNYLRVLNVSGNQLT-TLE-----------------------ESVFHSVGNLETLIL 327

Query: 449 SKNNI 453
             N +
Sbjct: 328 DSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  114 bits (288), Expect = 5e-28
 Identities = 72/362 (19%), Positives = 118/362 (32%), Gaps = 65/362 (17%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE-----GMNMLESLDLS 56
           +  + LDL  N          A    L+ L L  N +     +E      +  L +L L 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLR 88

Query: 57  GNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPK 116
            N+     L   T LS+L KL++                L NL+ L++ DN++  +   +
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYI-SHR 146

Query: 117 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176
            + GL  L  L L    +        ++     L  L L+  N             L  L
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNI--NAIRDYSFKRLYRL 202

Query: 177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236
           + L I    ++ ++        +L  L +    LT  +    + HL  +  L LS N   
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 237 IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLP 296
             I         +L+                        + +   +L             
Sbjct: 262 T-IEGSMLHELLRLQ-----------------------EIQLVGGQLA------------ 285

Query: 297 NLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS 356
                 +   AF G        +N L  L++S NQLT  + E +     NLE L+L +N 
Sbjct: 286 -----VVEPYAFRG--------LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNP 331

Query: 357 LQ 358
           L 
Sbjct: 332 LA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (272), Expect = 8e-26
 Identities = 61/313 (19%), Positives = 120/313 (38%), Gaps = 38/313 (12%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE---GMNMLESLDLSG 57
             +L+ L+L+ N  +     +   L +L+ L L  NRL+  I +    G++ L  LD+S 
Sbjct: 55  FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISE 113

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
           NK    +      L +L+ L +           +    L++LE+L +    + ++   + 
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSI-PTEA 171

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
              L  L  L L  L I       +S      LK L +    +  T+T        ++L 
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTP--NCLYGLNLT 227

Query: 178 DLYIDRNDFIGSLPWC-LANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236
            L I   + + ++P+  + +L  LR L++  N ++  +  S L  L  ++ + L      
Sbjct: 228 SLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA 285

Query: 237 IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLP 296
           + +    F   + L++                       L++S N+L   +   +   + 
Sbjct: 286 V-VEPYAFRGLNYLRV-----------------------LNVSGNQLT-TLEESVFHSVG 320

Query: 297 NLGFLSITFNAFN 309
           NL  L +  N   
Sbjct: 321 NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 42/200 (21%), Positives = 84/200 (42%), Gaps = 10/200 (5%)

Query: 264 RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLI 323
            +P         LD+  N+++  +  +     P+L  L +  N  +   P +F ++ +L 
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 324 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTKLKRLNLDGNH 380
            L L +N+L   IP  +  G  NL  L +S N    L   +F    +L  LK L +  N 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDND 139

Query: 381 FIGDIPE-SLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQ 439
            +  I   + S  +SL+ L +   ++T      + ++  L  + +   ++       F +
Sbjct: 140 -LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 440 LDYLEILDLSKNNIAGSLPS 459
           L  L++L++S      ++  
Sbjct: 199 LYRLKVLEISHWPYLDTMTP 218

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (274), Expect = 6e-27
 Identities = 46/282 (16%), Positives = 96/282 (34%), Gaps = 19/282 (6%)

Query: 173 LVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSN 232
               +   +  +    +L     +  +++ L +  N L+  +S++ L   T +E+L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 233 NHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEI 291
           N            + S L+     NN +      P     +I  L  + N +   +    
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNIS-RVSCSR 118

Query: 292 GKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL 351
                    + +  N          G  + + YLDL  N++       LA     LE+L 
Sbjct: 119 ---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 352 LSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPT 411
           L  N +       +    KLK L+L  N  +  +     + + +  + + +N +   I  
Sbjct: 176 LQYNFIYD--VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 412 WIGNISFLDAIIMPDNHLE-GPIPSEFCQLDYLEILDLSKNN 452
            +     L+   +  N    G +   F +   ++ +      
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (264), Expect = 2e-25
 Identities = 48/257 (18%), Positives = 100/257 (38%), Gaps = 18/257 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
             N+K LDLS N  +    + LA  + L+ L+L+ N L  ++++E ++ L +LDL+ N  
Sbjct: 33  AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY- 91

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
               +  L    S+  L+                     + + +++N+I  L    D   
Sbjct: 92  ----VQELLVGPSIETLHAANNNISRV----SCSRGQGKKNIYLANNKITML-RDLDEGC 142

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
             ++++LDL    I   +       S  +L+ L L+ N     +   +G      L+ L 
Sbjct: 143 RSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNF----IYDVKGQVVFAKLKTLD 197

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
           +  N  +  +     +   +  + + +N+L   +  + L    ++E   L  N F     
Sbjct: 198 LSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTL 254

Query: 241 LEPFFNYSKLKIFHANN 257
            + F    +++      
Sbjct: 255 RDFFSKNQRVQTVAKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.8 bits (244), Expect = 7e-23
 Identities = 49/332 (14%), Positives = 110/332 (33%), Gaps = 45/332 (13%)

Query: 44  IEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELD 103
            +  N  +   ++ +    ++ S   +  ++++L+L            +L   + LE L+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLN 64

Query: 104 MSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKT 163
           +S N +       D   L  LR LDL+   ++        +   PS++TL+  +NN ++ 
Sbjct: 65  LSSNVLYET---LDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANNNISRV 114

Query: 164 VTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLT 223
             +          +++Y+  N             + ++ L +  N++     +       
Sbjct: 115 SCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 224 SIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKL 283
           ++E L L  N       ++    ++KLK                        LD+S NKL
Sbjct: 170 TLEHLNLQYNFIY---DVKGQVVFAKLKT-----------------------LDLSSNKL 203

Query: 284 QGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG 343
              +  E       + ++S+  N     I  +     +L + DL  N             
Sbjct: 204 A-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 344 CFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLN 375
              ++ +             ++  +  L    
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.3 bits (191), Expect = 7e-16
 Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 13/184 (7%)

Query: 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN 330
                  ++ + L+      + +   N+  L ++ N  +    +       L  L+LS+N
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLS 390
            L  E  +  ++    L  L L+NN +Q +L         ++ L+   N+ I  +    S
Sbjct: 69  VLY-ETLDLESLS--TLRTLDLNNNYVQ-ELL----VGPSIETLHAANNN-ISRVS--CS 117

Query: 391 NCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG-PIPSEFCQLDYLEILDLS 449
                + +Y+++N IT       G  S +  + +  N ++           D LE L+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 450 KNNI 453
            N I
Sbjct: 178 YNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 11/164 (6%)

Query: 290 EIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 349
           EI +         +T ++   ++ S      ++  LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI 409
           L LS+N L         +L+ L+ L+L+ N+      + L    S++ L+ ++N+I+  +
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 410 PTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
                       I + +N +      +      ++ LDL  N I
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 39/234 (16%)

Query: 221 HLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISY 280
           +    ++  ++++  +         +   +K                        LD+S 
Sbjct: 8   NGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKE-----------------------LDLSG 43

Query: 281 NKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHL 340
           N L   I          L  L+++ N            +++L  LDL+NN +  E+    
Sbjct: 44  NPLS-QISAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-ELLV-- 97

Query: 341 AMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYI 400
                ++E L  +NN++        +     K + L  N             S +Q L +
Sbjct: 98  ---GPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 401 SDNDITG-SIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
             N+I   +      +   L+ + +  N +   +  +      L+ LDLS N +
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 12/69 (17%), Positives = 30/69 (43%)

Query: 385 IPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 444
           I E   N +  +   ++D+ +  ++ +   +   +  + +  N L     ++      LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 445 ILDLSKNNI 453
           +L+LS N +
Sbjct: 62  LLNLSSNVL 70

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (275), Expect = 1e-26
 Identities = 71/417 (17%), Positives = 132/417 (31%), Gaps = 79/417 (18%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGN 58
           L+N K +   +++      + L     ++ L+L   ++E   +      + ++ L +  N
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
                       +  L  L L       +       +   L  L MS+N ++ +     +
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI-EDDTF 161

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
           +    L+ L LS  R+         +   PSL    +  N  +                 
Sbjct: 162 QATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYNLLST---------------- 200

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIP 238
                          LA   ++  L    N +   +     + LT    L L +N+    
Sbjct: 201 ---------------LAIPIAVEELDASHNSIN-VVRGPVNVELTI---LKLQHNNL--- 238

Query: 239 ISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 298
                  NY  L                         +D+SYN+L+  I       +  L
Sbjct: 239 TDTAWLLNYPGLVE-----------------------VDLSYNELE-KIMYHPFVKMQRL 274

Query: 299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 358
             L I+ N    ++      + +L  LDLS+N L   +  +       LE L L +NS+ 
Sbjct: 275 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIV 331

Query: 359 GQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGN 415
                K +    LK L L  N +  +   +L    ++    + D D    I   + +
Sbjct: 332 ---TLKLSTHHTLKNLTLSHNDWDCNSLRALF--RNVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (271), Expect = 5e-26
 Identities = 70/365 (19%), Positives = 130/365 (35%), Gaps = 50/365 (13%)

Query: 43  NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL 102
           N++   +   + +     +         L++ + +    +  +       LDS   +E L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74

Query: 103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK 162
           +++D +I+ +     +     ++ L +    IR      H   + P L  L L+ N+   
Sbjct: 75  NLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTVLVLERNDL-- 129

Query: 163 TVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CLANLTSLRVLHVPDNQLTGNLSSSPLMH 221
           +            L  L +  N+ +  +        TSL+ L +  N+LT       L  
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT----HVDLSL 184

Query: 222 LTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYN 281
           + S+    +S N                        +L+ P  +          LD S+N
Sbjct: 185 IPSLFHANVSYNLLS---------------------TLAIPIAVEE--------LDASHN 215

Query: 282 KLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA 341
            +   +    G V   L  L +  N    +  +   +   L+ +DLS N+L  +I  H  
Sbjct: 216 SIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPF 268

Query: 342 MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYIS 401
           +    LE L +SNN L   L      +  LK L+L  NH +  +  +      L+ LY+ 
Sbjct: 269 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLD 326

Query: 402 DNDIT 406
            N I 
Sbjct: 327 HNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (264), Expect = 3e-25
 Identities = 76/393 (19%), Positives = 145/393 (36%), Gaps = 74/393 (18%)

Query: 62  SSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGL 121
             I S+L        +++        F  +++  L+N + +   ++ +  L         
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLP-AALLDSF 68

Query: 122 RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181
           R++  L+L+ L+I +                  + +  FA              +Q LY+
Sbjct: 69  RQVELLNLNDLQIEE------------------IDTYAFAY----------AHTIQKLYM 100

Query: 182 DRNDFIGSLPW-CLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
             N  I  LP     N+  L VL +  N L+ +L      +   +  L +SNN+ +  I 
Sbjct: 101 GFN-AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IE 157

Query: 241 LEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF 300
            + F   + L+                        L +S N+L  H+ +    ++P+L  
Sbjct: 158 DDTFQATTSLQN-----------------------LQLSSNRLT-HVDLS---LIPSLFH 190

Query: 301 LSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ 360
            ++++N       S+     ++  LD S+N +   +   +      L  L L +N+L   
Sbjct: 191 ANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD- 240

Query: 361 LFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLD 420
             +   N   L  ++L  N     +         L+ LYIS+N +  ++  +   I  L 
Sbjct: 241 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 421 AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
            + +  NHL   +     Q D LE L L  N+I
Sbjct: 299 VLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (271), Expect = 9e-26
 Identities = 91/455 (20%), Positives = 168/455 (36%), Gaps = 74/455 (16%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSL-AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNK 59
                 L+L++       LSSL      L++L  + N L   +  E    L+SL +  N 
Sbjct: 70  DRQAHELELNNLG-----LSSLPELPPHLESLVASCNSLT-ELP-ELPQSLKSLLVDNNN 122

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
             +  LS L     L  L +     +    + EL + S L+ +D+ +N +  L       
Sbjct: 123 LKA--LSDL--PPLLEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLKKLP-----D 170

Query: 120 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDL 179
               L F+     ++    + L  + + P L  +Y  +N+  K           + L+ +
Sbjct: 171 LPPSLEFIAAGNNQL----EELPELQNLPFLTAIYADNNSLKKLPD------LPLSLESI 220

Query: 180 YIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF-QIP 238
               N         L NL  L  ++  +N L   L         S+E L + +N+   +P
Sbjct: 221 VAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTDLP 273

Query: 239 ISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 298
              +   + + L +    N  SG   LP     N+  L+ S N+++      +  + P+L
Sbjct: 274 ELPQ---SLTFLDVSE--NIFSGLSELP----PNLYYLNASSNEIR-----SLCDLPPSL 319

Query: 299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 358
             L+++ N     +P+       L  L  S N L  E+PE       NL+ L +  N L+
Sbjct: 320 EELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQ----NLKQLHVEYNPLR 370

Query: 359 GQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISF 418
            +      ++  L+  +      + ++PE   N   L+ L++  N +    P    ++  
Sbjct: 371 -EFPDIPESVEDLRMNSH-----LAEVPELPQN---LKQLHVETNPLR-EFPDIPESVED 420

Query: 419 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
           L    M    +  P        D LE      ++ 
Sbjct: 421 LR---MNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.7 bits (218), Expect = 7e-19
 Identities = 70/362 (19%), Positives = 125/362 (34%), Gaps = 81/362 (22%)

Query: 92  ELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLK 151
           E +++ +  E   + +E +    P +    R++    L     R                
Sbjct: 29  EAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLRDCLDR-------------QAH 74

Query: 152 TLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLT 211
            L L +         +       HL+ L    N  +  LP    +L SL V +     L+
Sbjct: 75  ELELNNLGL------SSLPELPPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALS 127

Query: 212 GNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRK 271
                        +E L +SNN  +    L    N S LKI                   
Sbjct: 128 DLPP--------LLEYLGVSNNQLE---KLPELQNSSFLKI------------------- 157

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQ 331
               +D+  N L+     ++  + P+L F++   N           ++  L  +   NN 
Sbjct: 158 ----IDVDNNSLK-----KLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNS 206

Query: 332 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSN 391
           L  ++P+       +LE ++  NN L  +   +  NL  L  +  D N  +  +P+   +
Sbjct: 207 LK-KLPDLP----LSLESIVAGNNIL--EELPELQNLPFLTTIYADNNL-LKTLPDLPPS 258

Query: 392 CSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 451
              L+ L + DN +T  +P    +++FLD      + L    P+       L  L+ S N
Sbjct: 259 ---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSN 307

Query: 452 NI 453
            I
Sbjct: 308 EI 309

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 26/155 (16%)

Query: 311 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG------------CFNLEYLLLSNNSLQ 358
            +P    ++ S      + ++     P                        L L+N  L 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 359 GQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISF 418
               S       L+ L    N  + ++PE   +  SL     +   ++   P        
Sbjct: 85  ----SLPELPPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDLPPL------- 132

Query: 419 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
           L+ + + +N LE  +P E     +L+I+D+  N++
Sbjct: 133 LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSL 165

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (272), Expect = 1e-25
 Identities = 88/428 (20%), Positives = 165/428 (38%), Gaps = 29/428 (6%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           LS L+ L +SHN      +S       L+ L L++N+L   I+      L+ LDLS N F
Sbjct: 44  LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCHPTVNLKHLDLSFNAF 102

Query: 61  NS-SILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
           ++  I      +S L+ L L  T  + +     +  +++L    +     +     +D  
Sbjct: 103 DALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKEDPE 158

Query: 120 GLRKLRFLDLSGLRIRDGSK---VLHSIGSFPSLKTLYLKS----NNFAKTVTTTQGLCE 172
           GL+      L  +   +      +  S+ +  +L+   +K     N  +  ++    L  
Sbjct: 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218

Query: 173 LVHLQDLYIDRNDFIGSLPW---CLANLTSLRVLHVPDNQLTGNLSSSPLMH----LTSI 225
              L +L ++  +   +       L   T++    + + +L G L      +    L ++
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278

Query: 226 EVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQ 284
            +  + ++ F  P S   +  +S + I +   +       L        + LD S N L 
Sbjct: 279 SIHQVVSDVFGFPQSY-IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 285 GHIPVEIGKVLPNLGFLSITFNAFN--GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM 342
                E    L  L  L +  N       I      M SL  LD+S N ++ +  +    
Sbjct: 338 -DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 343 GCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISD 402
              +L  L +S+N L   +F       ++K L+L  N  I  IP+ +    +LQ L ++ 
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVAS 453

Query: 403 NDITGSIP 410
           N +  S+P
Sbjct: 454 NQLK-SVP 460

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (257), Expect = 9e-24
 Identities = 86/464 (18%), Positives = 166/464 (35%), Gaps = 40/464 (8%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGNK 59
                L++S N  +    S +  LS L+ L +++NR++       +    LE LDLS NK
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
                        +L+ L+L    F      +E  ++S L+ L +S   ++   V     
Sbjct: 81  LVKISCHPTV---NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 120 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDL 179
                  L L                +  SL  ++  +  F   +  +      + L ++
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 180 ----YIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHL--TSIEVLLLSNN 233
                 ++  +  S+   L     L  L + + + T N     L  +  T++    +SN 
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 234 HFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK 293
             Q  +    F                        S K +    +  +         I +
Sbjct: 258 KLQGQLDFRDF-------------------DYSGTSLKALSIHQVVSDVFGF-PQSYIYE 297

Query: 294 VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 353
           +  N+   + T +            ++  ++LD SNN LT +           LE L+L 
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQ 356

Query: 354 NNSLQ--GQLFSKKNNLTKLKRLNLDGNHFIGDIPESL-SNCSSLQGLYISDNDITGSIP 410
            N L+   ++      +  L++L++  N    D  +   S   SL  L +S N +T +I 
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 411 TWI-GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
             +   I  LD   +  N ++  IP +  +L+ L+ L+++ N +
Sbjct: 417 RCLPPRIKVLD---LHSNKIKS-IPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.5 bits (227), Expect = 5e-20
 Identities = 63/400 (15%), Positives = 126/400 (31%), Gaps = 52/400 (13%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           +S LKFL LS      S +  +A L+  K L +         + EG+    +  L     
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSN---------------LEELDMS 105
            +     +  +S     NL  +  K   +  +     +               L  ++ +
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 106 DNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVT 165
            N    ++    +  +      ++      D     +S  S  +L    + S+ F     
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFP 291

Query: 166 TTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSI 225
            +       ++       +        C + ++    L   +N LT +       HLT +
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTEL 350

Query: 226 EVLLLSNNHFQ-IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQ 284
           E L+L  N  + +    E       L+                        LDIS N + 
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQ-----------------------LDISQNSVS 387

Query: 285 GHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC 344
                       +L  L+++ N    +I         +  LDL +N++       +    
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-----SIPKQV 440

Query: 345 F---NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHF 381
                L+ L +++N L+       + LT L+++ L  N +
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.1 bits (169), Expect = 9e-13
 Identities = 44/239 (18%), Positives = 82/239 (34%), Gaps = 35/239 (14%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGN 58
           L  L    +  + F           S++   +   +            ++    LD S N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQEL-DSLSNLEELDMSDNEIDNLVVPKD 117
               ++  +   L+ L  L L     K    + E+   + +L++LD+S N +       D
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
               + L  L++S                          SN    T+      C    ++
Sbjct: 395 CSWTKSLLSLNMS--------------------------SNILTDTIFR----CLPPRIK 424

Query: 178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236
            L +  N  I S+P  +  L +L+ L+V  NQL  ++       LTS++ + L  N + 
Sbjct: 425 VLDLHSNK-IKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 8e-09
 Identities = 51/361 (14%), Positives = 97/361 (26%), Gaps = 54/361 (14%)

Query: 138 SKVLHSI--GSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLA 195
              L  +          L +  N  ++  T+   +  L  L+ L I  N           
Sbjct: 9   KNGLIHVPKDLSQKTTILNISQNYISELWTSD--ILSLSKLRILIISHNRIQYLDISVFK 66

Query: 196 NLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH- 254
               L  L +  N+L             +++ L LS N F      + F N S+LK    
Sbjct: 67  FNQELEYLDLSHNKLV----KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 255 ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS 314
           +   L    +       ++    +     + +   E  + L +    S+           
Sbjct: 123 STTHLE---KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 315 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----------------------------- 345
              D++     +L  + +   + ++                                   
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 346 --------NLEYLLLSNNSLQGQLFSKK-----NNLTKLKRLNLDGNHFIGDIPESLSNC 392
                    + Y  +SN  LQGQL  +       +L  L    +  + F           
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 393 SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN 452
           S++     + +            IS    +   +N L   +      L  LE L L  N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 453 I 453
           +
Sbjct: 360 L 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 325 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD 384
           +D S N L   +P+ L+        L +S N +     S   +L+KL+ L +  N     
Sbjct: 5   VDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 385 IPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG-PIPSEFCQLDYL 443
                     L+ L +S N +         N+  LD   +  N  +  PI  EF  +  L
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLD---LSFNAFDALPICKEFGNMSQL 117

Query: 444 EILDLSKNNI 453
           + L LS  ++
Sbjct: 118 KFLGLSTTHL 127

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  106 bits (267), Expect = 3e-25
 Identities = 73/422 (17%), Positives = 126/422 (29%), Gaps = 50/422 (11%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFN 61
            N      +      +   S   L++L +L    + +     IE +  L  L  + N   
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT 77

Query: 62  SSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGL 121
           +  LS  T   +L  L   +          ++  L+ L  L+   N++  L    D    
Sbjct: 78  TLDLSQNT---NLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTKL----DVSQN 126

Query: 122 RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181
             L +L+ +   + +       +     L  L    N       T   +     L  L  
Sbjct: 127 PLLTYLNCARNTLTE-----IDVSHNTQLTELDCHLNKK----ITKLDVTPQTQLTTLDC 177

Query: 182 DRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISL 241
             N  I  L   ++    L  L+   N +T       L     +  L  S+N     ++ 
Sbjct: 178 SFNK-ITELD--VSQNKLLNRLNCDTNNIT----KLDLNQNIQLTFLDCSSNK----LTE 226

Query: 242 EPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF 300
                 ++L  F  + N L+    L   +   +  L      L   I      +  N   
Sbjct: 227 IDVTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EID-----LTHNTQL 277

Query: 301 LSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ 360
           +                    L  LD     +T E+          L YL L+N  L   
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELDLS---QNPKLVYLYLNNTELTEL 333

Query: 361 LFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLD 420
             S   + TKLK L+    H I D    +    +L   + ++          + N S   
Sbjct: 334 DVS---HNTKLKSLSCVNAH-IQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

Query: 421 AI 422
           A+
Sbjct: 389 AV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 53/307 (17%), Positives = 92/307 (29%), Gaps = 35/307 (11%)

Query: 148 PSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPD 207
            +  +    +       T T    +L  L  L    +  I  +   +  LT L  L    
Sbjct: 18  DNFASEVAAAFE--MQATDTISEEQLATLTSLDCHNSS-ITDMT-GIEKLTGLTKLICTS 73

Query: 208 NQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLP 266
           N +T    +  L   T++  L   +N     ++       +KL   +   N L+    L 
Sbjct: 74  NNIT----TLDLSQNTNLTYLACDSNK----LTNLDVTPLTKLTYLNCDTNKLTK---LD 122

Query: 267 TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLD 326
                 +  L+ + N L   I V        L  L    N               L  LD
Sbjct: 123 VSQNPLLTYLNCARNTLT-EIDV---SHNTQLTELDCHLN--KKITKLDVTPQTQLTTLD 176

Query: 327 LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIP 386
            S N++T             L  L    N++     +      +L  L+   N  + +I 
Sbjct: 177 CSFNKITELDVSQNK----LLNRLNCDTNNITKLDLN---QNIQLTFLDCSSNK-LTEID 228

Query: 387 ESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 446
             ++  + L     S N +T  +   +  +S L  +      L     +   QL Y +  
Sbjct: 229 --VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE 283

Query: 447 DLSKNNI 453
              K   
Sbjct: 284 GCRKIKE 290

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 15/163 (9%)

Query: 296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 355
            N             +   S   + +L  LD  N+ +T ++          L  L+ ++N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSN 74

Query: 356 SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGN 415
           ++     S     T L  L  D N  + ++   ++  + L  L    N +T  +   +  
Sbjct: 75  NITTLDLS---QNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLT-KLD--VSQ 125

Query: 416 ISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
              L  +    N L      +      L  LD   N     L 
Sbjct: 126 NPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD 165

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (264), Expect = 1e-24
 Identities = 71/417 (17%), Positives = 132/417 (31%), Gaps = 79/417 (18%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGN 58
           L+N K +   +++      + L     ++ L+L   ++E   +      + ++ L +  N
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
                       +  L  L L       +       +   L  L MS+N ++ +     +
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI-EDDTF 167

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
           +    L+ L LS  R+         +   PSL    +  N  +                 
Sbjct: 168 QATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYNLLST---------------- 206

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIP 238
                          LA   ++  L    N +   +     + LT    L L +N+    
Sbjct: 207 ---------------LAIPIAVEELDASHNSIN-VVRGPVNVELTI---LKLQHNNL--- 244

Query: 239 ISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL 298
                  NY  L                         +D+SYN+L+  I       +  L
Sbjct: 245 TDTAWLLNYPGLVE-----------------------VDLSYNELE-KIMYHPFVKMQRL 280

Query: 299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 358
             L I+ N    ++      + +L  LDLS+N L   +  +       LE L L +NS+ 
Sbjct: 281 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIV 337

Query: 359 GQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGN 415
                K +    LK L L  N +  +   +L    ++    + D D    I   + +
Sbjct: 338 ---TLKLSTHHTLKNLTLSHNDWDCNSLRALF--RNVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (254), Expect = 3e-23
 Identities = 74/392 (18%), Positives = 144/392 (36%), Gaps = 72/392 (18%)

Query: 62  SSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGL 121
             I S+L        +++        F  +++ +L+N + +   ++ +  L         
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLP-AALLDSF 74

Query: 122 RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181
           R++  L+L+ L+I +                  + +  FA              +Q LY+
Sbjct: 75  RQVELLNLNDLQIEE------------------IDTYAFAY----------AHTIQKLYM 106

Query: 182 DRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISL 241
             N      P    N+  L VL +  N L+ +L      +   +  L +SNN+ +  I  
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IED 164

Query: 242 EPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFL 301
           + F   + L+                        L +S N+L  H+ +    ++P+L   
Sbjct: 165 DTFQATTSLQN-----------------------LQLSSNRLT-HVDL---SLIPSLFHA 197

Query: 302 SITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQL 361
           ++++N       S+     ++  LD S+N +   +   +      L  L L +N+L    
Sbjct: 198 NVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD-- 246

Query: 362 FSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDA 421
            +   N   L  ++L  N     +         L+ LYIS+N +  ++  +   I  L  
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 422 IIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
           + +  NHL   +     Q D LE L L  N+I
Sbjct: 306 LDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 59/409 (14%), Positives = 122/409 (29%), Gaps = 27/409 (6%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
              ++ LD SHNS   +V+        L  L L +N L  +  +     L  +DLS N+ 
Sbjct: 210 PIAVEELDASHNSI--NVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 266

Query: 61  NSSILSSLTALSSLRKLNLMA---TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
              +      +  L +L +                   +  L+ LD+S N + ++   ++
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVALNLYG-----QPIPTLKVLDLSHNHLLHV--ERN 319

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
                +L  L L    I         + +  +LK L L  N++              ++ 
Sbjct: 320 QPQFDRLENLYLDHNSIVTL-----KLSTHHTLKNLTLSHNDWDCNSLRAL----FRNVA 370

Query: 178 DLYIDRNDFIGSLPWCLANLTSLRVL--HVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF 235
              +D  D    + + L +    +       D  L     +S +  +   +    + +  
Sbjct: 371 RPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTI 430

Query: 236 QIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 295
               SL  +           N  L           + +    I   +L   +  EI   L
Sbjct: 431 NSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNL 490

Query: 296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 355
                        + ++   F  +       L   Q      +         E L   N 
Sbjct: 491 RRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQK---ETEDLEQENI 547

Query: 356 SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDND 404
           +L+ QL +K+    +L++        +  +    +     + +    + 
Sbjct: 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHHH 596

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  105 bits (263), Expect = 2e-24
 Identities = 58/294 (19%), Positives = 104/294 (35%), Gaps = 21/294 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
            +     +L   S  +    +   L+S+  +    + ++    I+ +  +  L L+GNK 
Sbjct: 20  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 77

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
               +  LT L +L  L L     K   D+  L  L  L+ L +  N I ++        
Sbjct: 78  TD--IKPLTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISDI---NGLVH 129

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
           L +L  L L   +I D    +  +     L TL L+ N     ++    L  L  LQ+LY
Sbjct: 130 LPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQ----ISDIVPLAGLTKLQNLY 181

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
           + +N  I  L   LA L +L VL +   +   N   +   +L     +  ++     P  
Sbjct: 182 LSKNH-ISDLR-ALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 241 LEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKV 294
           +    +Y K  +       +            I      ++        E+  V
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTV 292

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  103 bits (257), Expect = 9e-24
 Identities = 53/285 (18%), Positives = 97/285 (34%), Gaps = 18/285 (6%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           L+++  +  +++   +  +  +  L ++  L L  N+L     +  +  L  L L  NK 
Sbjct: 42  LNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI 99

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
               LSSL  L  L+ L+L   G     D+  L  L  LE L + +N+I ++        
Sbjct: 100 KD--LSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDI---TVLSR 151

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
           L KL  L L   +I D    +  +     L+ LYL  N+    ++  + L  L +L  L 
Sbjct: 152 LTKLDTLSLEDNQISD----IVPLAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLE 203

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
           +   + +       +NL     +   D  L      S         V             
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

Query: 241 LEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQG 285
           +              +  ++ P +       ++    I      G
Sbjct: 264 IFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAG 308

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  100 bits (249), Expect = 1e-22
 Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 25/248 (10%)

Query: 19  LSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN 78
           +      +     +L    +  ++    +N ++ +  + +   S  +  +  L ++ KL 
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 79  LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 138
           L         D++ L +L NL  L + +N+I +L   KD   L+KL+ L L    I D  
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFLDENKIKDLSSLKD---LKKLKSLSLEHNGISD-- 123

Query: 139 KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLT 198
             ++ +   P L++LYL +N     +T    L  L  L  L ++ N  I  +   LA LT
Sbjct: 124 --INGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQ-ISDIV-PLAGLT 175

Query: 199 SLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNS 258
            L+ L++  N ++       L  L +++VL L +         +P  + S L + +   +
Sbjct: 176 KLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQ----ECLNKPINHQSNLVVPNTVKN 228

Query: 259 LSGPFRLP 266
             G    P
Sbjct: 229 TDGSLVTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.2 bits (210), Expect = 8e-18
 Identities = 49/298 (16%), Positives = 94/298 (31%), Gaps = 48/298 (16%)

Query: 150 LKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQ 209
           +      S      +                + +   +         L S+  +   ++ 
Sbjct: 1   MGETITVSTP----IKQIFPDDAFAETIKDNLKKKS-VTDAV-TQNELNSIDQIIANNSD 54

Query: 210 LTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRS 269
           +    S   + +L ++  L L+ N       ++P  N   L                   
Sbjct: 55  IK---SVQGIQYLPNVTKLFLNGNKLT---DIKPLTNLKNLGW----------------- 91

Query: 270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSN 329
                 L +  NK++    ++    L  L  LS+  N  +  I +    +  L  L L N
Sbjct: 92  ------LFLDENKIKDLSSLKD---LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGN 140

Query: 330 NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESL 389
           N++T      L+     L+ L L +N +          LTKL+ L L  NH I D+  +L
Sbjct: 141 NKIT--DITVLS-RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH-ISDL-RAL 193

Query: 390 SNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIP-SEFCQLDYLEIL 446
           +   +L  L +   +          N+   + +   D  L  P   S+    +   + 
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 4e-14
 Identities = 55/261 (21%), Positives = 93/261 (35%), Gaps = 67/261 (25%)

Query: 194 LANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIF 253
                     ++    +T    +     L SI+ ++ +N+  +   S++       +   
Sbjct: 17  DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTK- 69

Query: 254 HANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP 313
                                 L ++ NKL    P+     L NLG+L +  N     + 
Sbjct: 70  ----------------------LFLNGNKLTDIKPLT---NLKNLGWLFLDENKIK-DL- 102

Query: 314 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR 373
           SS  D+  L  L L +N ++ +I   L      LE L L NN +     +  + LTKL  
Sbjct: 103 SSLKDLKKLKSLSLEHNGIS-DI-NGLV-HLPQLESLYLGNNKITD--ITVLSRLTKLDT 157

Query: 374 LNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPI 433
           L+L+ N  I DI   L+  + LQ LY+S N I+        ++  L              
Sbjct: 158 LSLEDNQ-ISDI-VPLAGLTKLQNLYLSKNHIS--------DLRALA------------- 194

Query: 434 PSEFCQLDYLEILDLSKNNIA 454
                 L  L++L+L      
Sbjct: 195 -----GLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 5/174 (2%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           L+ L  L L  N  ++  +  LAGL+ L+NL L+ N +     + G+  L+ L+L   + 
Sbjct: 152 LTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 209

Query: 61  NSSI---LSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
            +      S+L   ++++  +      +   D  + +  +    L    NE+  +     
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLC 171
             G  K RF       +++   V + +        +   +   A    T QG  
Sbjct: 270 TIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYV 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 2e-24
 Identities = 58/323 (17%), Positives = 106/323 (32%), Gaps = 30/323 (9%)

Query: 142 HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLR 201
           H        + LY + +   +       L +     +   +R        W  AN  + +
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHD--VLSQWQRHYNADRNRW----HSAWRQANSNNPQ 59

Query: 202 VLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ-IPISLEPFFNYSKLKIFH-ANNSL 259
           +       L                 L L +      P   +  F  S L+        L
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGL 116

Query: 260 SGPFRLPT--RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFG 317
                LP   +    +  L ++ N L+  +P  I   L  L  LSI        +P    
Sbjct: 117 M---ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLA 171

Query: 318 ---------DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNL 368
                     + +L  L L    +   +P  +A    NL+ L + N+ L   L    ++L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHL 228

Query: 369 TKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNH 428
            KL+ L+L G   + + P      + L+ L + D     ++P  I  ++ L+ + +    
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 429 LEGPIPSEFCQLDYLEILDLSKN 451
               +PS   QL    I+ +  +
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 9e-24
 Identities = 51/347 (14%), Positives = 103/347 (29%), Gaps = 55/347 (15%)

Query: 96  LSNLEELDMSDNEIDNLV-VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSL--KT 152
            S  E L    +    L          ++    D +           HS     +     
Sbjct: 11  SSGRENLYFQGST--ALRPYHDVLSQWQRHYNADRNRW---------HSAWRQANSNNPQ 59

Query: 153 LYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG 212
           +  ++    K                L +     +   P     L+ L+ + +    L  
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM- 117

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQ-IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRK 271
            L  + +     +E L L+ N  + +P S+    + ++L+                    
Sbjct: 118 ELPDT-MQQFAGLETLTLARNPLRALPASIA---SLNRLRE------------------- 154

Query: 272 NIIALDISYNKLQGHIPVEIGKV--------LPNLGFLSITFNAFNGSIPSSFGDMNSLI 323
               L I        +P  +           L NL  L + +     S+P+S  ++ +L 
Sbjct: 155 ----LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209

Query: 324 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIG 383
            L + N+ L+  +   +      LE L L   +              LKRL L     + 
Sbjct: 210 SLKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 384 DIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430
            +P  +   + L+ L +        +P+ I  +     I++P +   
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 58/386 (15%), Positives = 110/386 (28%), Gaps = 86/386 (22%)

Query: 25  LSSLKNLSLA-YNRLEGSIN-IEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT 82
            S  +NL       L    + +       + D +               ++ +       
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGR 66

Query: 83  GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH 142
             K T D+ E  +      L++    +     P     L  L+ + +    +    ++  
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQF--PDQAFRLSHLQHMTIDAAGLM---ELPD 121

Query: 143 SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRV 202
           ++  F  L+TL L  N           +  L  L++L I     +  LP  LA+  +   
Sbjct: 122 TMQQFAGLETLTLARNPL---RALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 203 LHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF-QIPISLEPFFNYSKLKIFHANNSLSG 261
                              L +++ L L       +P S     N   LK          
Sbjct: 179 HQ----------------GLVNLQSLRLEWTGIRSLPAS---IANLQNLKS--------- 210

Query: 262 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNS 321
                         L I  + L   +   I   LP L  L +       + P  FG    
Sbjct: 211 --------------LKIRNSPLS-ALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAP 254

Query: 322 LIYLDLSN-NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNH 380
           L  L L + + L   +P  +                           LT+L++L+L G  
Sbjct: 255 LKRLILKDCSNLL-TLPLDIH-------------------------RLTQLEKLDLRGCV 288

Query: 381 FIGDIPESLSNCSSLQGLYISDNDIT 406
            +  +P  ++   +   + +  +   
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 23/170 (13%)

Query: 310 GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA-------------------MGCFNLEYL 350
           GS        +    L    +       + L+                       N +  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 351 LLSNNSLQGQLFSKKN-NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI 409
             +  +L+      ++        L L     +   P+     S LQ + I    +   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 410 PTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           P  +   + L+ + +  N L   +P+    L+ L  L +        LP 
Sbjct: 120 PDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNK 59
           L NL+ L L       S+ +S+A L +LK+L +  + L      I  +  LE LDL G  
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDV-QELDSLSNLEELDMSDNEIDNLVVPKDY 118
              +        + L++L L          +  ++  L+ LE+LD+     +   +P   
Sbjct: 241 ALRNYPPIFGGRAPLKRLIL--KDCSNLLTLPLDIHRLTQLEKLDLRGCV-NLSRLPSLI 297

Query: 119 RGLRKLRFLDLS 130
             L     + + 
Sbjct: 298 AQLPANCIILVP 309

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (253), Expect = 4e-23
 Identities = 64/340 (18%), Positives = 114/340 (33%), Gaps = 53/340 (15%)

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
                 L++    +      L        + TL +  NN       T        L+ L 
Sbjct: 39  NNGNAVLNVGESGLTTLPDCL-----PAHITTLVIPDNNL------TSLPALPPELRTLE 87

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF-QIPI 239
           +  N  + SLP     L  L +   P   L            + +  L +  N    +P+
Sbjct: 88  VSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQLTSLPV 138

Query: 240 SLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 299
                    +L +  ++N L+    LP+     +  L    N+L   +P+        L 
Sbjct: 139 LPP---GLQELSV--SDNQLASLPALPS----ELCKLWAYNNQLT-SLPMLPS----GLQ 184

Query: 300 FLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG 359
            LS++ N    S+P+       L  L   NN+LT  +P   +     L+ L++S N L  
Sbjct: 185 ELSVSDNQLA-SLPTLPS---ELYKLWAYNNRLT-SLPALPS----GLKELIVSGNRLT- 234

Query: 360 QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFL 419
              S     ++LK L + GN  +  +P   S    L  L +  N +T  +P  + ++S  
Sbjct: 235 ---SLPVLPSELKELMVSGN-RLTSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSE 286

Query: 420 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
             + +  N L         ++               +  S
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (250), Expect = 8e-23
 Identities = 71/367 (19%), Positives = 118/367 (32%), Gaps = 78/367 (21%)

Query: 96  LSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYL 155
            +++  L + DN + +L  P       +LR L++SG ++   + +         L     
Sbjct: 60  PAHITTLVIPDNNLTSL--PA---LPPELRTLEVSGNQL---TSLPVLPPGLLELSIFSN 111

Query: 156 KSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLS 215
              +                L  L+I  N  + SLP        L+ L V DNQL  +L 
Sbjct: 112 PLTHLPA---------LPSGLCKLWIFGNQ-LTSLP---VLPPGLQELSVSDNQLA-SLP 157

Query: 216 SSPLMHLTSIEVLLLSNNHF-QIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNII 274
           +     L     L   NN    +P+                                 + 
Sbjct: 158 AL-PSELCK---LWAYNNQLTSLPMLPS-----------------------------GLQ 184

Query: 275 ALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTG 334
            L +S N+L   +P         L  L    N    S+P+       L  L +S N+LT 
Sbjct: 185 ELSVSDNQLA-SLPTLPS----ELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLT- 234

Query: 335 EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSS 394
            +P   +     L+ L++S N L     S     + L  L++  N  +  +PESL + SS
Sbjct: 235 SLPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSS 285

Query: 395 LQGLYISDNDITGSIPTWIGNISFLDAIIMP---DNHLEGPIPSEFCQLDYLEILDLSKN 451
              + +  N ++      +  I+       P    +      P E   L       L   
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345

Query: 452 NIAGSLP 458
                 P
Sbjct: 346 REGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.8 bits (246), Expect = 3e-22
 Identities = 70/417 (16%), Positives = 136/417 (32%), Gaps = 86/417 (20%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSL--AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGN 58
            +    L++  +      L++L     + +  L +  N L  S+       L +L++SGN
Sbjct: 39  NNGNAVLNVGESG-----LTTLPDCLPAHITTLVIPDNNLT-SLPALPPE-LRTLEVSGN 91

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
           +  +S+      L  L   +   T              S L +L +  N++ +L  P   
Sbjct: 92  QL-TSLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLTSL--PVL- 139

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
                L+ L +S  ++               L  L+  +N        T        LQ+
Sbjct: 140 --PPGLQELSVSDNQLASLP------ALPSELCKLWAYNNQL------TSLPMLPSGLQE 185

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF-QI 237
           L +  N  + SLP   + L  L   +   N+LT +L + P    + ++ L++S N    +
Sbjct: 186 LSVSDNQ-LASLPTLPSELYKLWAYN---NRLT-SLPALP----SGLKELIVSGNRLTSL 236

Query: 238 PISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPN 297
           P+        S+LK                        L +S N+L   +P+        
Sbjct: 237 PVLP------SELKE-----------------------LMVSGNRLT-SLPMLPS----G 262

Query: 298 LGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL--LLSNN 355
           L  LS+  N     +P S   ++S   ++L  N L+    + L        Y   ++  +
Sbjct: 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

Query: 356 SLQGQLFSKKNNLTKLKRLNLDGNHFIG----DIPESLSNCSSLQGLYISDNDITGS 408
                   +   L       L           D         +     +  + ++ +
Sbjct: 322 MAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSET 378

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 96.3 bits (240), Expect = 2e-22
 Identities = 56/261 (21%), Positives = 113/261 (43%), Gaps = 27/261 (10%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           L+N   +    ++  +    + A L  +  LS     +     ++ +N L  L+L  N+ 
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
               L+ L  L+ + +L L     K   +V  +  L +++ LD++  +I ++       G
Sbjct: 76  TD--LAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDV---TPLAG 127

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
           L  L+ L L   +I +    +  +    +L+ L + +      V+    L  L  L  L 
Sbjct: 128 LSNLQVLYLDLNQITN----ISPLAGLTNLQYLSIGNAQ----VSDLTPLANLSKLTTLK 179

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
            D N  I  +   LA+L +L  +H+ +NQ++     SPL + +++ ++ L+N      I+
Sbjct: 180 ADDN-KISDIS-PLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQ----TIT 230

Query: 241 LEPFFNYSKLKIFHANNSLSG 261
            +P F  + L + +     SG
Sbjct: 231 NQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.5 bits (238), Expect = 4e-22
 Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 24/241 (9%)

Query: 17  SVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRK 76
           +V+     L++   ++   + +  ++    ++ + +L   G    +  +  +  L++L  
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIG 67

Query: 77  LNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD 136
           L L         D+  L +L+ + EL++S N + N+       GL+ ++ LDL+  +I D
Sbjct: 68  LELKDNQIT---DLAPLKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITD 121

Query: 137 GSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLAN 196
               +  +    +L+ LYL  N     +T    L  L +LQ L I     +  L   LAN
Sbjct: 122 ----VTPLAGLSNLQVLYLDLNQ----ITNISPLAGLTNLQYLSIGNAQ-VSDLT-PLAN 171

Query: 197 LTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHAN 256
           L+ L  L   DN+++     SPL  L ++  + L NN       + P  N S L I    
Sbjct: 172 LSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLT 225

Query: 257 N 257
           N
Sbjct: 226 N 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 18/217 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           L+NL  L+L  N   +  L+ L  L+ +  L L+ N L+    I G+  +++LDL+  + 
Sbjct: 62  LNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
               ++ L  LS+L+ L L         ++  L  L+NL+ L + + ++ +L        
Sbjct: 120 TD--VTPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDL---TPLAN 171

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
           L KL  L     +I D    +  + S P+L  ++LK+N     ++    L    +L  + 
Sbjct: 172 LSKLTTLKADDNKISD----ISPLASLPNLIEVHLKNNQ----ISDVSPLANTSNLFIVT 223

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSS 217
           +          +   NL    V+  P        + S
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 56/282 (19%), Positives = 103/282 (36%), Gaps = 47/282 (16%)

Query: 146 SFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHV 205
           +  +   +    +N    VT T    +L  +  L       + ++   +  L +L  L +
Sbjct: 17  ALANAIKIAAGKSN----VTDTVTQADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLEL 70

Query: 206 PDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRL 265
            DNQ+T     +PL +LT I  L LS N  +   ++        +K              
Sbjct: 71  KDNQIT---DLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKT------------- 111

Query: 266 PTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYL 325
                     LD++  ++    P+     L NL  L +  N    +  S    + +L YL
Sbjct: 112 ----------LDLTSTQITDVTPLAG---LSNLQVLYLDLNQI--TNISPLAGLTNLQYL 156

Query: 326 DLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDI 385
            + N Q++   P         L  L   +N +     S   +L  L  ++L  N  I D+
Sbjct: 157 SIGNAQVSDLTPLA---NLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQ-ISDV 210

Query: 386 PESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDN 427
              L+N S+L  + +++  IT     +  N+   + +  P  
Sbjct: 211 -SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 50/261 (19%), Positives = 90/261 (34%), Gaps = 45/261 (17%)

Query: 193 CLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKI 252
               L +   +    + +T    +     L  I  L           ++E     + L  
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 253 FHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSI 312
                                  L++  N++    P+   K L  +  L ++ N      
Sbjct: 68  -----------------------LELKDNQITDLAPL---KNLTKITELELSGN--PLKN 99

Query: 313 PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLK 372
            S+   + S+  LDL++ Q+T   P     G  NL+ L L  N +     S    LT L+
Sbjct: 100 VSAIAGLQSIKTLDLTSTQITDVTPLA---GLSNLQVLYLDLNQITN--ISPLAGLTNLQ 154

Query: 373 RLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGP 432
            L++     + D+   L+N S L  L   DN I+   P  + ++  L  + + +N +   
Sbjct: 155 YLSIGNAQ-VSDL-TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD- 209

Query: 433 IPSEFCQLDYLEILDLSKNNI 453
             S       L I+ L+   I
Sbjct: 210 -VSPLANTSNLFIVTLTNQTI 229

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.0 bits (244), Expect = 5e-22
 Identities = 78/424 (18%), Positives = 154/424 (36%), Gaps = 36/424 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSL--AGLSSLKNLSLAYNRLE---GSINIEGMNMLESLDL 55
             +L++LD+SHN      L ++    ++SL++L L++N  +          +  L  L L
Sbjct: 99  NQDLEYLDVSHNR-----LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153

Query: 56  SGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVP 115
           S  KF    L  +  L     L  + +      + + L    N   L +  +      V 
Sbjct: 154 SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQ 212

Query: 116 KDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVH 175
            +   +  L  L LS +++ D +            +   L +       TT +   +L  
Sbjct: 213 VN-MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271

Query: 176 ------LQDLYIDRNDFIGSLPW-----CLANLTSLRVLHVPDNQLTGNLSSSPLMHLTS 224
                 ++ L I        +           L SL + HV +         +       
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAE 330

Query: 225 IEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLSGPFRLPTRSRKNIIALDISYNKL 283
           + + +LS +     I +    + S     +   N  +        + K +  L +  N L
Sbjct: 331 MNIKMLSISDTPF-IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 284 QGHIPVEIGKV--LPNLGFLSITFNAFN-GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHL 340
           + +          + +L  L ++ N+ N  +   +     S++ L+LS+N LTG +   L
Sbjct: 390 K-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

Query: 341 AMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPE-SLSNCSSLQGLY 399
                 ++ L L NN +   +     +L  L+ LN+  N  +  +P+      +SLQ ++
Sbjct: 449 PP---KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIW 503

Query: 400 ISDN 403
           + DN
Sbjct: 504 LHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.9 bits (210), Expect = 8e-18
 Identities = 87/427 (20%), Positives = 146/427 (34%), Gaps = 41/427 (9%)

Query: 50  LESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEI 109
            ++L LS N  +   +  ++ LS LR L L     + + D        +LE LD+S N +
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 110 DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAK---- 162
            N+        +  LR LDLS         VL     F     L  L L +  F +    
Sbjct: 113 QNI--SCC--PMASLRHLDLSFNDF----DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 163 TVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLT--GNLSSSPLM 220
            V      C L+ L   +I   +        + N T L ++  P++  +   N+S + L 
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGET---ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 221 HLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFR----LPTRSRKNIIAL 276
           HL    + L   N  ++   L        L      +  +              + +  L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 277 DISYNKLQGHIPVEIGK----VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332
           +I    +   I  E        L +L    +    F  S  + +     +    LS +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 333 TGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHF--IGDIPESLS 390
              I         +  +L  + N     +F   + L +L+ L L  N       +     
Sbjct: 342 P-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 391 NCSSLQGLYISDNDITGSIP----TWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 446
           N SSL+ L +S N +          W  +I  L+   +  N L G +    C    +++L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN---LSSNMLTGSVFR--CLPPKVKVL 455

Query: 447 DLSKNNI 453
           DL  N I
Sbjct: 456 DLHNNRI 462

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.8 bits (207), Expect = 2e-17
 Identities = 65/401 (16%), Positives = 141/401 (35%), Gaps = 29/401 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSL-AGLSSLKNLSLAYNRLEGSINIEGMNMLE----SLDL 55
           +++L+ LDLS N F+   +      L+ L  L L+  +    +++  +  L      LDL
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDL 178

Query: 56  SGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVP 115
                      SL   ++     +        F VQ   S++ L  L +S+ ++++    
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHP--NSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236

Query: 116 K----DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKTVTTTQ 168
           +         R    L+++   I    K    +  F     ++ L + +    + +   +
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 169 G---LCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSI 225
                  L  L   ++    F+ S     +    + +  +  +     +        +S 
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSF 355

Query: 226 EVLLLSNNHFQIPISLEPFFNYSKLKIFHANN----SLSGPFRLPTRSRKNIIALDISYN 281
             L  + N F      +      +L+          +      +   +  ++  LD+S N
Sbjct: 356 TFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLN 413

Query: 282 KLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA 341
            L  H          ++  L+++ N   GS+         +  LDL NN++   IP+ + 
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDV- 469

Query: 342 MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFI 382
                L+ L +++N L+       + LT L+ + L  N + 
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.9 bits (197), Expect = 3e-16
 Identities = 75/376 (19%), Positives = 128/376 (34%), Gaps = 31/376 (8%)

Query: 97  SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 153
              + L +S N I  L    D   L +LR L LS  RIR     L     F     L+ L
Sbjct: 52  PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRS----LDF-HVFLFNQDLEYL 105

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWC--LANLTSLRVLHVPDNQLT 211
            +  N            C +  L+ L +  NDF   LP C    NLT L  L +   +  
Sbjct: 106 DVSHNRL-----QNISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 212 -GNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKI-FHANNSLSGPFRLPTRS 269
             +L     +HL+ I + L+S +            N + L + FH N+  S    +   +
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 270 RKNIIALDISYNKLQ-GHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNS-----LI 323
             ++   +I  N      +   + ++      L++T      +   S           + 
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 324 YLDLSNNQLTGEIPEHLAMGCFN----LEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGN 379
           YL++ N  +T  I              L    + N        +  +   ++    L  +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 380 HFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE--GPIPSEF 437
                      + SS   L  + N  T S+      +  L  +I+  N L+    +    
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399

Query: 438 CQLDYLEILDLSKNNI 453
             +  LE LD+S N++
Sbjct: 400 KNMSSLETLDVSLNSL 415

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 1e-21
 Identities = 55/236 (23%), Positives = 88/236 (37%), Gaps = 36/236 (15%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN---IEGMNMLESLDLSG 57
           L +L+ L L  NS     + +  GL+SL  L L  N L   I     E ++ L  L L  
Sbjct: 98  LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRN 156

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
           N   S    +   + SL +L+L              + L NL+ L++    I ++    +
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PN 213

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
              L  L  L++SG    +      S     SLK L++ ++  +                
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRP--GSFHGLSSLKKLWVMNSQVS---------------- 255

Query: 178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
              I+RN F          L SL  L++  N L+ +L       L  +  L L +N
Sbjct: 256 --LIERNAF--------DGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.7 bits (228), Expect = 3e-20
 Identities = 65/291 (22%), Positives = 105/291 (36%), Gaps = 73/291 (25%)

Query: 97  SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 153
           SN   L++ +N I  +     +R L  L  L L    IR     +   G+F    SL TL
Sbjct: 75  SNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIRQ----IEV-GAFNGLASLNTL 128

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLP-WCLANLTSLRVLHVPD-NQLT 211
            L  N    TV  +     L  L++L++  N  I S+P +    + SL  L + +  +L 
Sbjct: 129 ELFDNWL--TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 212 GNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRK 271
             +S      L +++ L L   + +    +        L+                    
Sbjct: 186 -YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEE------------------- 222

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQ 331
               L++S N     I                         P SF  ++SL  L + N+Q
Sbjct: 223 ----LEMSGNHFP-EIR------------------------PGSFHGLSSLKKLWVMNSQ 253

Query: 332 LTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTKLKRLNLDGN 379
           ++  I  +   G  +L  L L++N   SL   LF+    L  L  L+L  N
Sbjct: 254 VS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFT---PLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.5 bits (217), Expect = 9e-19
 Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 32/256 (12%)

Query: 198 TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN 257
           ++ R L++ +N +   + +    HL  +EVL L  N  +  I +  F   + L       
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNT----- 127

Query: 258 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFG 317
                             L++  N L   IP    + L  L  L +  N        +F 
Sbjct: 128 ------------------LELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 318 DMNSLIYLDLSN-NQLTGEIPEHLAMGCFNLEYLLLSNNSLQG-QLFSKKNNLTKLKRLN 375
            + SL+ LDL    +L   I E    G FNL+YL L   +++     +    L  L+ L 
Sbjct: 169 RVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELE 224

Query: 376 LDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS 435
           + GNHF    P S    SSL+ L++ ++ ++         ++ L  + +  N+L      
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 436 EFCQLDYLEILDLSKN 451
            F  L YL  L L  N
Sbjct: 285 LFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 48/244 (19%), Positives = 83/244 (34%), Gaps = 40/244 (16%)

Query: 93  LDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PS 149
              L +LE L +  N I  +     + GL  L  L+L    +     V+ S G+F     
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLT----VIPS-GAFEYLSK 148

Query: 150 LKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CLANLTSLRVLHVPDN 208
           L+ L+L++N        +     +  L  L +     +  +       L +L+ L++   
Sbjct: 149 LRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 209 QLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTR 268
            +        L  L  +E L +S NHF   I    F   S LK                 
Sbjct: 207 NIK---DMPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKK---------------- 246

Query: 269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLS 328
                  L +  +++   I       L +L  L++  N  +      F  +  L+ L L 
Sbjct: 247 -------LWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

Query: 329 NNQL 332
           +N  
Sbjct: 299 HNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 6e-13
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLA-YNRLEGSINI---EGMNMLESLDLS 56
           LS L+ L L +N   +    +   + SL  L L    +LE  I+    EG+  L+ L+L 
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLG 204

Query: 57  GNKFNSSILSSLTALSSLRKLNLMATGFK----GTFDVQELDSLSNLEELDMSDNEIDNL 112
                   + +LT L  L +L +    F     G+F       LS+L++L + ++++   
Sbjct: 205 MCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSF-----HGLSSLKKLWVMNSQVSL- 256

Query: 113 VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160
           +    + GL  L  L+L+   +   S           L  L+L  N +
Sbjct: 257 IERNAFDGLASLVELNLAHNNLS--SLPHDLFTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 2e-21
 Identities = 57/236 (24%), Positives = 90/236 (38%), Gaps = 36/236 (15%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN---IEGMNMLESLDLSG 57
           L +L+ L LS N      + +  GL++L  L L  NRL  +I       ++ L+ L L  
Sbjct: 87  LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRN 145

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
           N   S    +   + SLR+L+L              + LSNL  L+++   +  +    +
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---PN 202

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
              L KL  LDLSG  +        S      L+ L++  +                   
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRP--GSFQGLMHLQKLWMIQSQIQ---------------- 244

Query: 178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
              I+RN F         NL SL  +++  N LT  L       L  +E + L +N
Sbjct: 245 --VIERNAF--------DNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.1 bits (229), Expect = 2e-20
 Identities = 54/242 (22%), Positives = 96/242 (39%), Gaps = 24/242 (9%)

Query: 147 FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CLANLTSLRVLHV 205
             + + L L  N     +        L HL+ L + RN  I ++       L +L  L +
Sbjct: 63  STNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLEL 119

Query: 206 PDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH--ANNSLSGPF 263
            DN+LT  + +   ++L+ ++ L L NN  +  I    F     L+         LS   
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLS--- 174

Query: 264 RLPTRS---RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMN 320
            +   +     N+  L+++   L+  IP      L  L  L ++ N  +   P SF  + 
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP--LIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTKLKRLNLD 377
            L  L +  +Q+   I  +      +L  + L++N    L   LF+    L  L+R++L 
Sbjct: 232 HLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT---PLHHLERIHLH 287

Query: 378 GN 379
            N
Sbjct: 288 HN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 5e-18
 Identities = 66/256 (25%), Positives = 100/256 (39%), Gaps = 32/256 (12%)

Query: 198 TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN 257
           T+ R+L++ +NQ+   +  +   HL  +E+L LS NH +  I +  F   + L       
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNT----- 116

Query: 258 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFG 317
                             L++  N+L   IP      L  L  L +  N        +F 
Sbjct: 117 ------------------LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157

Query: 318 DMNSLIYLDLS-NNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG-QLFSKKNNLTKLKRLN 375
            + SL  LDL    +L+  I E    G  NL YL L+  +L+     +    L KL  L+
Sbjct: 158 RIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELD 213

Query: 376 LDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS 435
           L GNH     P S      LQ L++  + I         N+  L  I +  N+L      
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273

Query: 436 EFCQLDYLEILDLSKN 451
            F  L +LE + L  N
Sbjct: 274 LFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 28/246 (11%)

Query: 97  SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 153
           +N   L++ +N+I  +     ++ LR L  L LS   IR     +   G+F    +L TL
Sbjct: 64  TNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRT----IEI-GAFNGLANLNTL 117

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CLANLTSLRVLHVPD-NQLT 211
            L  N    T         L  L++L++  N  I S+P      + SLR L + +  +L+
Sbjct: 118 ELFDNRL--TTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 212 GNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-ANNSLS----GPFRLP 266
             +S      L+++  L L+  + +    +       KL     + N LS    G F+  
Sbjct: 175 -YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 267 TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLD 326
              +K    L +  +++Q  I       L +L  +++  N         F  ++ L  + 
Sbjct: 231 MHLQK----LWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285

Query: 327 LSNNQL 332
           L +N  
Sbjct: 286 LHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 9/163 (5%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLA-YNRLEG-SINI-EGMNMLESLDLSG 57
           LS LK L L +N   +    +   + SL+ L L    RL   S    EG++ L  L+L+ 
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
                  + +LT L  L +L+L                L +L++L M  ++I   +    
Sbjct: 195 CNLRE--IPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQV-IERNA 250

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160
           +  L+ L  ++L+   +               L+ ++L  N +
Sbjct: 251 FDNLQSLVEINLAHNNLT--LLPHDLFTPLHHLERIHLHHNPW 291

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.2 bits (232), Expect = 2e-21
 Identities = 58/266 (21%), Positives = 93/266 (34%), Gaps = 35/266 (13%)

Query: 145 GSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRND--FIGSLPWCLANLTSLRV 202
           G   S   L L+SN             +L  L  L +  N   F G         TSL+ 
Sbjct: 25  GIPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 203 LHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGP 262
           L +  N +     SS  + L  +E L   +++ +       F +   L            
Sbjct: 83  LDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY---------- 130

Query: 263 FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS-SFGDMNS 321
                        LDIS+   +      I   L +L  L +  N+F  +     F ++ +
Sbjct: 131 -------------LDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176

Query: 322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHF 381
           L +LDLS  QL  ++         +L+ L +S+N+           L  L+ L+   NH 
Sbjct: 177 LTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH- 234

Query: 382 IGDIPESL--SNCSSLQGLYISDNDI 405
           I    +       SSL  L ++ ND 
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.6 bits (228), Expect = 7e-21
 Identities = 61/243 (25%), Positives = 97/243 (39%), Gaps = 42/243 (17%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLE----GSINIEGMNMLESLDLSG 57
           S+   L+L  N   +        L+ L  LSL+ N L      S +  G   L+ LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
           N      + ++++             F G         L  LE LD   + +  +     
Sbjct: 88  NG-----VITMSS------------NFLG---------LEQLEHLDFQHSNLKQMSEFSV 121

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKTVTTTQGLCELV 174
           +  LR L +LD+S    R    V  + G F    SL+ L +  N+F +         EL 
Sbjct: 122 FLSLRNLIYLDISHTHTR----VAFN-GIFNGLSSLEVLKMAGNSFQENFLPD-IFTELR 175

Query: 175 HLQDLYIDRNDFIGSLPW-CLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
           +L  L + +   +  L      +L+SL+VL++  N    +L + P   L S++VL  S N
Sbjct: 176 NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLN 233

Query: 234 HFQ 236
           H  
Sbjct: 234 HIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.1 bits (224), Expect = 3e-20
 Identities = 49/216 (22%), Positives = 81/216 (37%), Gaps = 14/216 (6%)

Query: 198 TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ-IPISLEPFFNYSKLKIFH-A 255
           +S   L +  N+L  +L       LT +  L LS+N         +  F  + LK    +
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 256 NNSLSGPFRLPTRSRK--NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP 313
            N +     + +       +  LD  ++ L+      +   L NL +L I+      +  
Sbjct: 87  FNGVI---TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 314 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTK 370
             F  ++SL  L ++ N         +     NL +L LS      L    F   N+L+ 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSS 200

Query: 371 LKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT 406
           L+ LN+  N+F           +SLQ L  S N I 
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.8 bits (213), Expect = 8e-19
 Identities = 65/241 (26%), Positives = 96/241 (39%), Gaps = 35/241 (14%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLA--GLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSG 57
           L+ L  L LS N  +     S +  G +SLK L L++N +   S N  G+  LE LD   
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110

Query: 58  NKFNS-SILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPK 116
           +     S  S   +L +L  L++  T  +        + LS+LE L M+ N      +P 
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 117 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176
            +  LR L FLDLS  ++   S    +  S  SL+ L +  NNF                
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSHNNFF--------------- 212

Query: 177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHL-TSIEVLLLSNNHF 235
               +D   +          L SL+VL    N +        L H  +S+  L L+ N F
Sbjct: 213 ---SLDTFPY--------KCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

Query: 236 Q 236
            
Sbjct: 261 A 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 10/182 (5%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLT-G 334
           +  +   L   +P  I     +   L +  N         F  +  L  L LS+N L+  
Sbjct: 12  IRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 335 EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPES--LSNC 392
                   G  +L+YL LS N +   + S    L +L+ L+   ++ +  + E     + 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSL 125

Query: 393 SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSE-FCQLDYLEILDLSKN 451
            +L  L IS      +       +S L+ + M  N  +     + F +L  L  LDLS+ 
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 452 NI 453
            +
Sbjct: 186 QL 187

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 81/498 (16%), Positives = 154/498 (30%), Gaps = 107/498 (21%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLA-GLSSLKNLSLAYNRL--EGSINI----EGMNMLESLD 54
            +++ LD+     +++  + L   L   + + L    L      +I         L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 55  LSGNKFNSSILSSLTAL-----SSLRKLNLMATGF--KGTFDVQE-LDSLSNLEELDMSD 106
           L  N+     +  +          ++KL+L        G   +   L +L  L+EL +SD
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 107 NEIDNLVVPKDYRGLR----KLRFLDLSGLRIRD-GSKVL-HSIGSFPSLKTLYLKSNNF 160
           N + +  +     GL     +L  L L    +     + L   + + P  K L + +N+ 
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 161 AKTVTTTQGLCEL-----VHLQDLYIDRNDF----IGSLPWCLANLTSLRVLHVPDNQLT 211
                  + LC+        L+ L ++           L   +A+  SLR L +  N+L 
Sbjct: 183 --NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 212 G----NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPT 267
                 L    L   + +  L +                    ++  A  SL        
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGIT-AKGCGDLC-----RVLRAKESLKE------ 288

Query: 268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDL 327
                   L ++ N+L       + + L   G                      L  L +
Sbjct: 289 --------LSLAGNELGDEGARLLCETLLEPG--------------------CQLESLWV 320

Query: 328 SNNQLTGEIPEHLA---MGCFNLEYLLLSNNSLQG---QLFSK--KNNLTKLKRLNLDGN 379
            +   T     H +        L  L +SNN L+    +   +      + L+ L L   
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 380 HF----IGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS 435
                    +  +L    SL+ L +S+N +  +     G +  ++++  P          
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDA-----GILQLVESVRQPGCL------- 428

Query: 436 EFCQLDYLEILDLSKNNI 453
                  LE L L     
Sbjct: 429 -------LEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 85/446 (19%), Positives = 147/446 (32%), Gaps = 94/446 (21%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLA-GLSS----LKNLSLAYNRL--EGSINIEGM----NML 50
             L  L+L  N   +  +  +  GL +    ++ LSL    L   G   +         L
Sbjct: 56  PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 115

Query: 51  ESLDLSGNKFNSSILSSLTAL-----SSLRKLNLMATGFKGTFDVQE----LDSLSNLEE 101
           + L LS N    + L  L          L KL L           +     L +  + +E
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKE 174

Query: 102 LDMSDNEIDNLVVPKDYRGLR----KLRFLDLSGLRIRD-GSKVLHS-IGSFPSLKTLYL 155
           L +S+N+I+   V    +GL+    +L  L L    +     + L   + S  SL+ L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 156 KSNNFAKTVTTTQGLCELV-----HLQDLYIDRNDF----IGSLPWCLANLTSLRVLHVP 206
            SN           LC  +      L+ L+I          G L   L    SL+ L + 
Sbjct: 235 GSNKL--GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292

Query: 207 DNQLTG----NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGP 262
            N+L       L  + L     +E L + +       +     ++S +            
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCS----FTAACCSHFSSV------------ 336

Query: 263 FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSL 322
                   + ++ L IS N+L+     E+ + L   G                    + L
Sbjct: 337 ----LAQNRFLLELQISNNRLEDAGVRELCQGLGQPG--------------------SVL 372

Query: 323 IYLDLSNNQLTGEIPEHLA---MGCFNLEYLLLSNNSLQ---GQLFSK--KNNLTKLKRL 374
             L L++  ++      LA   +   +L  L LSNN L         +  +     L++L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 375 NLDGNHF----IGDIPESLSNCSSLQ 396
            L   ++       +     +  SL+
Sbjct: 433 VLYDIYWSEEMEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 25/177 (14%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGL-----SSLKNLSLAYNRL--EGSINI----EGMNML 50
            +LK L L+ N   +     L          L++L +           +          L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 51  ESLDLSGNKFNSSILSSL-----TALSSLRKLNLMATGF--KGTFDVQE-LDSLSNLEEL 102
             L +S N+   + +  L        S LR L L            +   L +  +L EL
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 103 DMSDNEIDNLVVPKDYRGLR----KLRFLDLSGLRIRD-GSKVLHSI-GSFPSLKTL 153
           D+S+N + +  + +    +R     L  L L  +   +     L ++    PSL+ +
Sbjct: 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.5 bits (232), Expect = 1e-20
 Identities = 54/264 (20%), Positives = 88/264 (33%), Gaps = 55/264 (20%)

Query: 194 LANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIF 253
            +         +P       +S      +     L L+  +                   
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS----------------- 72

Query: 254 HANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP 313
                      LP      I  L+I+ N L   +P        +L +L    N  + ++P
Sbjct: 73  ----------SLPDNLPPQITVLEITQNALI-SLPELPA----SLEYLDACDNRLS-TLP 116

Query: 314 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR 373
                  SL +LD+ NNQLT  +PE  A     LEY+   NN    QL       T L+ 
Sbjct: 117 ELPA---SLKHLDVDNNQLT-MLPELPA----LLEYINADNN----QLTMLPELPTSLEV 164

Query: 374 LNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP----DNHL 429
           L++  N  +  +PE   +   L+ L +S N +  S+P         +   +     +N +
Sbjct: 165 LSVRNNQ-LTFLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 430 EGPIPSEFCQLDYLEILDLSKNNI 453
              IP     LD    + L  N +
Sbjct: 220 TH-IPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.4 bits (211), Expect = 6e-18
 Identities = 54/274 (19%), Positives = 94/274 (34%), Gaps = 36/274 (13%)

Query: 168 QGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEV 227
               +         +RN+ +  L  CL  +     L +    L+    S P      I V
Sbjct: 31  SAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS----SLPDNLPPQITV 84

Query: 228 LLLSNNHF-QIPISLEPFFNYSKLKIFHA-NNSLSGPFRLPTRSRKNIIALDISYNKLQG 285
           L ++ N    +P         + L+   A +N LS    LP     ++  LD+  N+L  
Sbjct: 85  LEITQNALISLPELP------ASLEYLDACDNRLS---TLPELP-ASLKHLDVDNNQLT- 133

Query: 286 HIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF 345
            +P         L +++   N     +P       SL  L + NNQLT  +PE       
Sbjct: 134 MLPELPA----LLEYINADNNQLT-MLPELPT---SLEVLSVRNNQLT-FLPELPE---- 180

Query: 346 NLEYLLLSNNSLQG---QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISD 402
           +LE L +S N L+          ++           N  I  IPE++ +      + + D
Sbjct: 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILED 239

Query: 403 NDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSE 436
           N ++  I   +   +       P  +       +
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.0 bits (171), Expect = 5e-13
 Identities = 66/348 (18%), Positives = 103/348 (29%), Gaps = 88/348 (25%)

Query: 1   LSNLKFLDLSHNSFNNS-------VLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESL 53
           L       LS NSF N+         S+              N     +    +N    L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 54  DLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLV 113
            L+           L++L                      +    +  L+++ N + +L 
Sbjct: 65  QLNRLN--------LSSLPD--------------------NLPPQITVLEITQNALISL- 95

Query: 114 VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL 173
            P+       L +LD    R+    +         SLK L + +N           L EL
Sbjct: 96  -PEL---PASLEYLDACDNRLSTLPE------LPASLKHLDVDNNQLTM-------LPEL 138

Query: 174 V-HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSN 232
              L+ +  D N  +  LP      TSL VL V +NQLT  L   P     S+E L +S 
Sbjct: 139 PALLEYINADNNQ-LTMLP---ELPTSLEVLSVRNNQLTF-LPELP----ESLEALDVST 189

Query: 233 NHF-QIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEI 291
           N    +P                     + P R    S +  I      N++  HIP  I
Sbjct: 190 NLLESLP---------------------AVPVRN-HHSEETEIFFRCRENRIT-HIPENI 226

Query: 292 GKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEH 339
              L     + +  N  +  I  S     +           +    + 
Sbjct: 227 LS-LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 47/296 (15%), Positives = 88/296 (29%), Gaps = 47/296 (15%)

Query: 93  LDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKT 152
             +L NL  L + +N+I   + P  +  L KL  L LS  ++++    L       +L+ 
Sbjct: 72  FKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLKE----LPE-KMPKTLQE 125

Query: 153 LYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSL--PWCLANLTSLRVLHVPDNQL 210
           L +  N    T         L  +  + +  N    S         +  L  + + D  +
Sbjct: 126 LRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 211 TGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSR 270
           T    + P     S+  L L  N     +        + L                    
Sbjct: 184 T----TIPQGLPPSLTELHLDGNKITK-VDAASLKGLNNLAK------------------ 220

Query: 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN 330
                L +S+N +   +        P+L  L +  N     +P    D   +  + L NN
Sbjct: 221 -----LGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 331 QLT-----GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK--NNLTKLKRLNLDGN 379
            ++        P        +   + L +N +Q           +     + L   
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 7e-20
 Identities = 64/343 (18%), Positives = 119/343 (34%), Gaps = 61/343 (17%)

Query: 124 LRFLDLSGLRIRDGSKVLHSI--GSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181
           LR +  S L        L  +     P    L L++N    T         L +L  L +
Sbjct: 33  LRVVQCSDLG-------LEKVPKDLPPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLIL 83

Query: 182 DRNDFIGSL-PWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
             N  I  + P   A L  L  L++  NQL       P     +++ L +  N     + 
Sbjct: 84  INNK-ISKISPGAFAPLVKLERLYLSKNQLK----ELPEKMPKTLQELRVHENEITK-VR 137

Query: 241 LEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQ-GHIPVEIGKVLPNLG 299
              F   +++ +                       +++  N L+   I     + +  L 
Sbjct: 138 KSVFNGLNQMIV-----------------------VELGTNPLKSSGIENGAFQGMKKLS 174

Query: 300 FLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---S 356
           ++ I       +IP   G   SL  L L  N++T ++      G  NL  L LS N   +
Sbjct: 175 YIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA 230

Query: 357 LQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITG------SIP 410
           +     +   N   L+ L+L+ N  +  +P  L++   +Q +Y+ +N+I+         P
Sbjct: 231 VDNGSLA---NTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 411 TWIGNISFLDAIIMPDNHLE-GPIPSE-FCQLDYLEILDLSKN 451
            +    +    + +  N ++   I    F  +     + L   
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 57/247 (23%), Positives = 95/247 (38%), Gaps = 34/247 (13%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE-----GMNMLESLDLS 56
            +   LDL +N            L +L  L L  N++     I       +  LE L LS
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLS 108

Query: 57  GNKFNSSILSSL--TALSSLRKL----NLMATGFKGTFDVQELDSLSNLEELDMSDNEID 110
            N+     L  L      +L++L    N +    K  F     + L+ +  +++  N + 
Sbjct: 109 KNQ-----LKELPEKMPKTLQELRVHENEITKVRKSVF-----NGLNQMIVVELGTNPLK 158

Query: 111 NLVVPKDY-RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQG 169
           +  +     +G++KL ++ ++   I    +     G  PSL  L+L  N    T      
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQ-----GLPPSLTELHLDGNKI--TKVDAAS 211

Query: 170 LCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLL 229
           L  L +L  L +  N         LAN   LR LH+ +N+L   +    L     I+V+ 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVY 269

Query: 230 LSNNHFQ 236
           L NN+  
Sbjct: 270 LHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 32/248 (12%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAG--LSSLKNLSLAYNRLEGSI---NIEGMNMLESLDL 55
           L  L+ L LS N      L  L      +L+ L +  N +   +      G+N +  ++L
Sbjct: 99  LVKLERLYLSKNQ-----LKELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVEL 152

Query: 56  SGNKFNSSILSS--LTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLV 113
             N   SS + +     +  L  + +  T       + +     +L EL +  N+I   V
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQ-GLPPSLTELHLDGNKITK-V 207

Query: 114 VPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL 173
                +GL  L  L LS   I        S+ + P L+ L+L +N          GL + 
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDN--GSLANTPHLRELHLNNNKLV---KVPGGLADH 262

Query: 174 VHLQDLYIDRNDFIGSLP-------WCLANLTSLRVLHVPDNQLT-GNLSSSPLMHLTSI 225
            ++Q +Y+  N+ I ++               S   + +  N +    +  S    +   
Sbjct: 263 KYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 226 EVLLLSNN 233
             + L N 
Sbjct: 322 AAVQLGNY 329

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 89.7 bits (223), Expect = 3e-20
 Identities = 54/261 (20%), Positives = 97/261 (37%), Gaps = 21/261 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
            +     +L   S  +    +   L+S+  +    + ++    I+ +  +  L L+GNK 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
               +  L  L +L  L L     K   D+  L  L  L+ L +  N I ++        
Sbjct: 81  TD--IKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISDI---NGLVH 132

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
           L +L  L L   +I D    +  +     L TL L+ N     ++    L  L  LQ+LY
Sbjct: 133 LPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQ----ISDIVPLAGLTKLQNLY 184

Query: 181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPIS 240
           + +N  I  L   LA L +L VL +   +   N   +   +L     +  ++     P  
Sbjct: 185 LSKNH-ISDLR-ALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTPEI 241

Query: 241 LEPFFNYSKLKIFHANNSLSG 261
           +    +Y K  +       + 
Sbjct: 242 ISDDGDYEKPNVKWHLPEFTN 262

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.9 bits (213), Expect = 6e-19
 Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 25/243 (10%)

Query: 19  LSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN 78
           + S    +     +L    +  ++    +N ++ +  + +   S  +  +  L ++ KL 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 79  LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 138
           L         D++ L +L NL  L + +N++ +L   KD   L+KL+ L L    I D  
Sbjct: 75  LNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSSLKD---LKKLKSLSLEHNGISD-- 126

Query: 139 KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLT 198
             ++ +   P L++LYL +N     +T    L  L  L  L ++ N  I  +   LA LT
Sbjct: 127 --INGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQ-ISDIV-PLAGLT 178

Query: 199 SLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNS 258
            L+ L++  N ++       L  L +++VL L +         +P  + S L + +   +
Sbjct: 179 KLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQ----ECLNKPINHQSNLVVPNTVKN 231

Query: 259 LSG 261
             G
Sbjct: 232 TDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 50/318 (15%), Positives = 104/318 (32%), Gaps = 74/318 (23%)

Query: 89  DVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 148
            +   D+ +   + ++    + + V   +   L  +  +  +   I+     +  I   P
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKS----VQGIQYLP 68

Query: 149 SLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDN 208
           ++  L+L  N     +T  + L  L +L  L++D N  +  L   L +L  L+ L +  N
Sbjct: 69  NVTKLFLNGNK----LTDIKPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHN 122

Query: 209 QLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTR 268
            ++     + L+HL  +E L L NN       +      +KL                  
Sbjct: 123 GIS---DINGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDT---------------- 160

Query: 269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLS 328
                  L +  N++                           S       +  L  L LS
Sbjct: 161 -------LSLEDNQI---------------------------SDIVPLAGLTKLQNLYLS 186

Query: 329 NNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPES 388
            N ++ ++      G  NL+ L L +     +  + ++NL     +       +   PE 
Sbjct: 187 KNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEI 241

Query: 389 LSNCSSLQGLYISDNDIT 406
           +S+    +   +  +   
Sbjct: 242 ISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 48/285 (16%), Positives = 88/285 (30%), Gaps = 47/285 (16%)

Query: 148 PSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPD 207
           P               +                + +   +         L S+  +   +
Sbjct: 2   PLGSETITVPTP----IKQIFSDDAFAETIKDNLKKKS-VTDAV-TQNELNSIDQIIANN 55

Query: 208 NQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPT 267
           + +    S   + +L ++  L L+ N       ++P  N   L                 
Sbjct: 56  SDIK---SVQGIQYLPNVTKLFLNGNKLT---DIKPLANLKNLGW--------------- 94

Query: 268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDL 327
                   L +  NK++    ++    L  L  LS+  N    S  +    +  L  L L
Sbjct: 95  --------LFLDENKVKDLSSLKD---LKKLKSLSLEHNGI--SDINGLVHLPQLESLYL 141

Query: 328 SNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPE 387
            NN++T      L+     L+ L L +N +          LTKL+ L L  NH I D+  
Sbjct: 142 GNNKITD--ITVLS-RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH-ISDL-R 194

Query: 388 SLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGP 432
           +L+   +L  L +   +          N+   + +   D  L  P
Sbjct: 195 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.4 bits (222), Expect = 9e-20
 Identities = 50/246 (20%), Positives = 104/246 (42%), Gaps = 16/246 (6%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI---EGMNMLESLDLSG 57
             NL+ L L+ N  N     S + L SL++L L+YN L  +++    + ++ L  L+L G
Sbjct: 75  CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLG 133

Query: 58  NKFNS-SILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPK 116
           N + +    S  + L+ L+ L +           ++   L+ LEEL++  +++ +   PK
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPK 192

Query: 117 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK------TVTTTQGL 170
             + ++ +  L L   +      +   +    S++ L L+  +         +   T  L
Sbjct: 193 SLKSIQNVSHLILHMKQHI--LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 171 CELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLL 230
            +    +++ I     +  +   L  ++ L  L    NQL  ++       LTS++ + L
Sbjct: 251 IKKFTFRNVKITDES-LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308

Query: 231 SNNHFQ 236
             N + 
Sbjct: 309 HTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.0 bits (208), Expect = 6e-18
 Identities = 60/287 (20%), Positives = 102/287 (35%), Gaps = 41/287 (14%)

Query: 138 SKVLHSI--GSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CL 194
           S  L+SI  G   ++K+L L +N       +   L   V+LQ L +  N  I ++     
Sbjct: 40  SGSLNSIPSGLTEAVKSLDLSNNRITYISNSD--LQRCVNLQALVLTSNG-INTIEEDSF 96

Query: 195 ANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH 254
           ++L SL  L +  N L+ NLSSS    L+S+  L L  N ++   +L     +S L    
Sbjct: 97  SSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK---TLGETSLFSHLT--- 149

Query: 255 ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS 314
                             +  L +        I  +    L  L  L I  +      P 
Sbjct: 150 -----------------KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 315 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ--------LFSKKN 366
           S   + ++ +L L   Q    + E       ++E L L +  L             +   
Sbjct: 193 SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 367 NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWI 413
                + + +     +  + + L+  S L  L  S N +  S+P  I
Sbjct: 252 KKFTFRNVKITDES-LFQVMKLLNQISGLLELEFSRNQLK-SVPDGI 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.5 bits (199), Expect = 9e-17
 Identities = 67/311 (21%), Positives = 110/311 (35%), Gaps = 52/311 (16%)

Query: 50  LESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEI 109
           ++SLDLS N+      S L    +L+ L L + G   T +     SL +LE LD+S N +
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

Query: 110 DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK--SNNFAKTVTTT 167
            NL     ++ L  L FL+L G       K L     F  L  L +    N    T    
Sbjct: 113 SNLS-SSWFKPLSSLTFLNLLGNPY----KTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 168 QGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEV 227
           +    L  L++L ID +D     P  L ++ ++  L +   Q    L    +   +S+E 
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVEC 226

Query: 228 LLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHI 287
           L L +                 L  FH +   +G      +                   
Sbjct: 227 LELRDTD---------------LDTFHFSELSTGETNSLIK------------------- 252

Query: 288 PVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNL 347
                        + IT  +    +      ++ L+ L+ S NQL   +P+ +     +L
Sbjct: 253 -------KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSL 303

Query: 348 EYLLLSNNSLQ 358
           + + L  N   
Sbjct: 304 QKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.8 bits (184), Expect = 8e-15
 Identities = 50/270 (18%), Positives = 102/270 (37%), Gaps = 46/270 (17%)

Query: 198 TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEP--FFNYSKLKIFHA 255
            +++ L + +N++T  +S+S L    +++ L+L++N      ++E   F +   L+    
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEH--- 104

Query: 256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSS 315
                               LD+SYN L  ++     K L +L FL++  N +     +S
Sbjct: 105 --------------------LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143

Query: 316 -FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTKL 371
            F  +  L  L + N     +I      G   LE L +  +   S + +      ++  +
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK---SIQNV 200

Query: 372 KRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISF--------LDAII 423
             L L     I  +   +   SS++ L + D D+     + +                + 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 424 MPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
           + D  L   +     Q+  L  L+ S+N +
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQL 289

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 5e-18
 Identities = 56/363 (15%), Positives = 100/363 (27%), Gaps = 95/363 (26%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE-----GMNMLESLDLS 56
            +   LDL +N  +        GL  L  L L  N++     I       +  L+ L +S
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYIS 110

Query: 57  GNKFNSSILSSL--TALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVV 114
            N      L  +     SSL +L +     +          L N+  ++M  N ++N   
Sbjct: 111 KNH-----LVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 115 PKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELV 174
                   KL +L +S  ++    K         +L  L+L  N                
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIPK-----DLPETLNELHLDHNKIQA------------ 207

Query: 175 HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH 234
                 I+  D            + L  L +  NQ+   + +  L  L ++  L L NN 
Sbjct: 208 ------IELEDL--------LRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNK 252

Query: 235 FQ-IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK 293
              +P       +   L++                       + +  N +          
Sbjct: 253 LSRVP---AGLPDLKLLQV-----------------------VYLHTNNIT--------- 277

Query: 294 VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLT-GEIPEHLAMGCFNLEYLLL 352
                    +  N F                + L NN +   E+         +   +  
Sbjct: 278 --------KVGVNDFCP--VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 353 SNN 355
            N 
Sbjct: 328 GNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.1 bits (206), Expect = 9e-18
 Identities = 55/297 (18%), Positives = 95/297 (31%), Gaps = 50/297 (16%)

Query: 93  LDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKT 152
              L +L  L + +N+I   +  K +  LRKL+ L +S   + +            SL  
Sbjct: 74  FKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPP-----NLPSSLVE 127

Query: 153 LYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSL--PWCLANLTSLRVLHVPDNQL 210
           L +  N              L ++  + +  N    S   P     L  L  L + + +L
Sbjct: 128 LRIHDNRI--RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184

Query: 211 TGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSR 270
           T      P     ++  L L +N  Q  I LE    YSKL                    
Sbjct: 185 T----GIPKDLPETLNELHLDHNKIQA-IELEDLLRYSKLYR------------------ 221

Query: 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN 330
                L + +N+++  I       LP L  L +  N  +  +P+   D+  L  + L  N
Sbjct: 222 -----LGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

Query: 331 QLTGEIPE------HLAMGCFNLEYLLLSNNSLQGQLFSKK--NNLTKLKRLNLDGN 379
            +T ++           +       + L NN +            +T    +     
Sbjct: 275 NIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 61/344 (17%), Positives = 110/344 (31%), Gaps = 64/344 (18%)

Query: 124 LRFLDLSGLRIRDGSKVLHSI--GSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181
           LR +  S L        L ++     P    L L++N+   +         L HL  L +
Sbjct: 35  LRVVQCSDLG-------LKAVPKEISPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVL 85

Query: 182 DRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISL 241
             N          + L  L+ L++  N L       P    +S+  L + +N  +  +  
Sbjct: 86  VNNKISKIHEKAFSPLRKLQKLYISKNHLV----EIPPNLPSSLVELRIHDNRIRK-VPK 140

Query: 242 EPFFNYSKLKIFH-ANNSL-SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 299
             F     +       N L +  F         +  L IS  KL                
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT--------------- 185

Query: 300 FLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---S 356
              I  +              +L  L L +N++   I     +    L  L L +N    
Sbjct: 186 --GIPKDLPE-----------TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 357 LQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP------ 410
           ++    S    L  L+ L+LD N  +  +P  L +   LQ +Y+  N+IT  +       
Sbjct: 232 IENGSLS---FLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCP 286

Query: 411 -TWIGNISFLDAIIMPDNHLEGPI--PSEFCQLDYLEILDLSKN 451
             +    ++ + I + +N +      P+ F  +     +     
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.8 bits (200), Expect = 6e-17
 Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 37/258 (14%)

Query: 198 TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-AN 256
               +L + +N ++  L       L  +  L+L NN     I  + F    KL+  + + 
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISK 111

Query: 257 NSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSF 316
           N L     +P     +++ L I  N+++  +P                           F
Sbjct: 112 NHLV---EIPPNLPSSLVELRIHDNRIR-KVP------------------------KGVF 143

Query: 317 GDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNL 376
             + ++  +++  N L     E  A     L YL +S   L G     K+    L  L+L
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG---IPKDLPETLNELHL 200

Query: 377 DGNHFIGDIPE-SLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS 435
           D N  I  I    L   S L  L +  N I       +  +  L  + + +N L   +P+
Sbjct: 201 DHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPA 258

Query: 436 EFCQLDYLEILDLSKNNI 453
               L  L+++ L  NNI
Sbjct: 259 GLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 50/249 (20%), Positives = 86/249 (34%), Gaps = 35/249 (14%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAG--LSSLKNLSLAYNRLE--GSINIEGMNMLESLDLS 56
           L  L+ L +S N      L  +     SSL  L +  NR+         G+  +  +++ 
Sbjct: 101 LRKLQKLYISKNH-----LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155

Query: 57  GNKFNSSILSSLT-ALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVP 115
           GN   +S           L  L +      G       D    L EL +  N+I   +  
Sbjct: 156 GNPLENSGFEPGAFDGLKLNYLRISEAKLTGI----PKDLPETLNELHLDHNKIQA-IEL 210

Query: 116 KDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKTVTTTQGLCE 172
           +D     KL  L L   +IR     + + GS    P+L+ L+L +N  +       GL +
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRM----IEN-GSLSFLPTLRELHLDNNKLS---RVPAGLPD 262

Query: 173 LVHLQDLYIDRNDFIGSLP-------WCLANLTSLRVLHVPDNQLT-GNLSSSPLMHLTS 224
           L  LQ +Y+  N  I  +                   + + +N +    +  +    +T 
Sbjct: 263 LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321

Query: 225 IEVLLLSNN 233
              +   N 
Sbjct: 322 RLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 11/142 (7%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN---IEGMNMLESLDLSG 57
              L  L L HN      L  L   S L  L L +N++   I    +  +  L  L L  
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDN 250

Query: 58  NKFNSSILSSLTALSSLRKLNL----MATGFKGTF-DVQELDSLSNLEELDMSDNEIDNL 112
           NK  S + + L  L  L+ + L    +       F  V      +    + + +N +   
Sbjct: 251 NKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 113 VVPKD-YRGLRKLRFLDLSGLR 133
            V    +R +     +     +
Sbjct: 310 EVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 34/139 (24%)

Query: 321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTKLKRLNLD 377
               LDL NN ++ E+ +    G  +L  L+L NN    +  + FS    L KL++L + 
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFS---PLRKLQKLYIS 110

Query: 378 GNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEF 437
            NH + +IP +L   SSL  L I DN I   +P                          F
Sbjct: 111 KNH-LVEIPPNLP--SSLVELRIHDNRIR-KVP-----------------------KGVF 143

Query: 438 CQLDYLEILDLSKNNIAGS 456
             L  +  +++  N +  S
Sbjct: 144 SGLRNMNCIEMGGNPLENS 162

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.7 bits (205), Expect = 6e-18
 Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 40/239 (16%)

Query: 147 FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CLANLTSLRVLHV 205
             + + ++L  N    +           +L  L++  N  +  +       L  L  L +
Sbjct: 31  PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDL 87

Query: 206 PDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEP--FFNYSKLKIFHANNSLSGPF 263
            DN    ++  +    L  +  L L     Q    L P  F   + L+            
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQY----------- 133

Query: 264 RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLI 323
                       L +  N LQ  +P +  + L NL  L +  N  +     +F  ++SL 
Sbjct: 134 ------------LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 324 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTKLKRLNLDGN 379
            L L  N++   +  H       L  L L  N   +L  +  +    L  L+ L L+ N
Sbjct: 181 RLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALA---PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 53/242 (21%), Positives = 90/242 (37%), Gaps = 42/242 (17%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI---EGMNMLESLDLSGN 58
           +  + + L  N  ++   +S     +L  L L  N L   I+     G+ +LE LDLS N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD- 117
               + L S+                  TF       L  L  L +    +  L      
Sbjct: 91  ----AQLRSVDP---------------ATF-----HGLGRLHTLHLDRCGLQEL--GPGL 124

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKTVTTTQGLCELV 174
           +RGL  L++L L    ++     L    +F    +L  L+L  N    +    +    L 
Sbjct: 125 FRGLAALQYLYLQDNALQ----ALPD-DTFRDLGNLTHLFLHGNRI--SSVPERAFRGLH 177

Query: 175 HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH 234
            L  L + +N      P    +L  L  L++  N L+  L +  L  L +++ L L++N 
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNP 236

Query: 235 FQ 236
           + 
Sbjct: 237 WV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 50/233 (21%), Positives = 91/233 (39%), Gaps = 36/233 (15%)

Query: 176 LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF 235
            Q +++  N              +L +L +  N L   + ++    L  +E L LS+N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQ 92

Query: 236 QIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 295
              +    F    +L                         L +    LQ  +   + + L
Sbjct: 93  LRSVDPATFHGLGRLHT-----------------------LHLDRCGLQ-ELGPGLFRGL 128

Query: 296 PNLGFLSITFNAFNGSIPS-SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN 354
             L +L +  NA   ++P  +F D+ +L +L L  N+++  +PE    G  +L+ LLL  
Sbjct: 129 AALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186

Query: 355 N---SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPES-LSNCSSLQGLYISDN 403
           N    +    F    +L +L  L L  N+ +  +P   L+   +LQ L ++DN
Sbjct: 187 NRVAHVHPHAFR---DLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.4 bits (199), Expect = 5e-17
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 10/192 (5%)

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQ 331
               + +  N++  H+P    +   NL  L +  N       ++F  +  L  LDLS+N 
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 332 LTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPE- 387
               +      G   L  L L       L   LF     L  L+ L L  N  +  +P+ 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNA-LQALPDD 147

Query: 388 SLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD 447
           +  +  +L  L++  N I+         +  LD +++  N +    P  F  L  L  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 448 LSKNNIAGSLPS 459
           L  NN++ +LP+
Sbjct: 208 LFANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 44/240 (18%), Positives = 78/240 (32%), Gaps = 38/240 (15%)

Query: 97  SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 153
           +  + + +  N I ++     +R  R L  L L    +           +F     L+ L
Sbjct: 32  AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDA-----AAFTGLALLEQL 85

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CLANLTSLRVLHVPDNQLTG 212
            L  N   ++V        L  L  L++DR   +  L       L +L+ L++ DN L  
Sbjct: 86  DLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKN 272
            L       L ++  L L  N     +    F     L                      
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDR-------------------- 181

Query: 273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332
              L +  N++  H+     + L  L  L +  N  +     +   + +L YL L++N  
Sbjct: 182 ---LLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 58/209 (27%), Positives = 80/209 (38%), Gaps = 48/209 (22%)

Query: 1   LSNLKFLDLSHNSFNNSV-LSSLAGLSSLKNLSLAYNRLEGSINI---EGMNMLESLDLS 56
           L+ L+ LDLS N+   SV  ++  GL  L  L L    L+  +      G+  L+ L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 57  GNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPK 116
            N         L AL               TF       L NL  L +  N I ++   +
Sbjct: 138 DNA--------LQALPD------------DTF-----RDLGNLTHLFLHGNRISSV-PER 171

Query: 117 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNFAKTVTTTQGLCEL 173
            +RGL  L  L L   R+      +H   +F     L TLYL +NN   +   T+ L  L
Sbjct: 172 AFRGLHSLDRLLLHQNRVA----HVHP-HAFRDLGRLMTLYLFANNL--SALPTEALAPL 224

Query: 174 VHLQDLYIDRNDFIGSLPW-CLANLTSLR 201
             LQ L ++ N      PW C      L 
Sbjct: 225 RALQYLRLNDN------PWVCDCRARPLW 247

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 32/159 (20%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           +++L ++ L++ +  +  L+ +    ++K+L++          I G++ LE L + G   
Sbjct: 43  MNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV 100

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
            S  + +L+ L+SL  L++  +    +  + ++++L  +  +D+S N    +      + 
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYN--GAITDIMPLKT 157

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN 159
           L +L+ L++    + D       I  FP L  LY  S  
Sbjct: 158 LPELKSLNIQFDGVHD----YRGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 13/184 (7%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFN 61
           S  K         +++   + A ++SL  ++LA   +     IE  + ++ L ++     
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT 79

Query: 62  SSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGL 121
           +   + ++ LS+L +L +M      +  +  L  L++L  LD+S +  D+ ++ K    L
Sbjct: 80  N--YNPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTL 135

Query: 122 RKLRFLDLSG-LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY 180
            K+  +DLS    I D    +  + + P LK+L ++ +     V   +G+ +   L  LY
Sbjct: 136 PKVNSIDLSYNGAITD----IMPLKTLPELKSLNIQFDG----VHDYRGIEDFPKLNQLY 187

Query: 181 IDRN 184
               
Sbjct: 188 AFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 29/185 (15%), Positives = 65/185 (35%), Gaps = 33/185 (17%)

Query: 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN 330
            ++  + ++   +     +E      N+  L+I     + +  +    +++L  L +   
Sbjct: 44  NSLTYITLANINVTDLTGIEY---AHNIKDLTINNI--HATNYNPISGLSNLERLRIMGK 98

Query: 331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLS 390
            +T +   +L+ G  +L  L +S+++    + +K N L K+  ++L  N  I DI   L 
Sbjct: 99  DVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLK 156

Query: 391 NCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK 450
               L+ L I  + +         +   ++                      L  L    
Sbjct: 157 TLPELKSLNIQFDGVH--------DYRGIE------------------DFPKLNQLYAFS 190

Query: 451 NNIAG 455
             I G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 6/114 (5%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGN 58
           LSNL+ L +      +  + +L+GL+SL  L ++++  + SI   I  +  + S+DLS N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNL 112
              + I   L  L  L+ LN+   G     D + ++    L +L      I   
Sbjct: 147 GAITDI-MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 14/167 (8%)

Query: 195 ANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH 254
           A + SL  + + +  +T     + + +  +I+ L ++N H     +  P    S L+   
Sbjct: 41  AQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 255 -ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP 313
                ++           ++  LDIS++     I  +I   LP +  + +++N     I 
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDI- 152

Query: 314 SSFGDMNSLIYLDLSNNQLTGEIP-EHLAMGCFNLEYLLLSNNSLQG 359
                +  L  L++  + +      E        L  L   + ++ G
Sbjct: 153 MPLKTLPELKSLNIQFDGVHDYRGIEDFP----KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 94  DSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTL 153
            +        +  +   N+   +    +  L ++ L+ + + D    L  I    ++K L
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQ----MNSLTYITLANINVTD----LTGIEYAHNIKDL 71

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGN 213
            + + +     T    +  L +L+ L I   D        L+ LTSL +L +  +    +
Sbjct: 72  TINNIH----ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-D 126

Query: 214 LSSSPLMHLTSIEVLLLSNN 233
              + +  L  +  + LS N
Sbjct: 127 SILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDI 405
             +  L             +  +  L  + L   + + D+   +    +++ L I++   
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHA 78

Query: 406 TGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           T   P  I  +S L+ + +    +          L  L +LD+S +    S+ +
Sbjct: 79  TNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 4e-16
 Identities = 53/274 (19%), Positives = 86/274 (31%), Gaps = 20/274 (7%)

Query: 149 SLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLA---NLTSLRVLHV 205
           SL+ L  + +  A     T  +  L  L+ L +        + +       ++ L+ L +
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSL-SLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 206 PDNQLTGNLSSSPL-MHLTSIEVLLLSNNHFQ-IPISLEPFFNYSKLKIFH---ANNSLS 260
            + ++TG      L      + +L L N  +      L     + K  +     A     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 261 GPFRLPTRSRKNIIALDISYNKLQGHIPVE---IGKVLPNLGFLSITFNAFN---GSIPS 314
                  R    +  LD+S N   G   +         P L  L++         G   +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 315 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL 374
                  L  LDLS+N L              L  L LS   L+ Q+   K    KL  L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP--KGLPAKLSVL 279

Query: 375 NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGS 408
           +L  N  +   P S      +  L +  N    S
Sbjct: 280 DLSYNR-LDRNP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.2 bits (190), Expect = 7e-16
 Identities = 58/310 (18%), Positives = 92/310 (29%), Gaps = 43/310 (13%)

Query: 86  GTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD-GSKVLHSI 144
           G  DV+      +LE L    +   +L    D      L+ L +   RI          +
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 145 GSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLA----NLTSL 200
                L+ L L++     T            L  L +    +     W           L
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151

Query: 201 RVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH------ 254
           +VL +       N S   +    ++  L LS+N       L       K           
Sbjct: 152 KVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 255 -ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP 313
               + SG       +R  +  LD+S+N L+                             
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG------------------------A 246

Query: 314 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR 373
            S    + L  L+LS   L  ++P+ L      L  L LS N L        + L ++  
Sbjct: 247 PSCDWPSQLNSLNLSFTGLK-QVPKGLPA---KLSVLDLSYNRLDR--NPSPDELPQVGN 300

Query: 374 LNLDGNHFIG 383
           L+L GN F+ 
Sbjct: 301 LSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 48/251 (19%), Positives = 84/251 (33%), Gaps = 23/251 (9%)

Query: 3   NLKFLDLSHNSFNNSVLSSLA---GLSSLKNLSLAYNRLEGSINIEGMNM----LESLDL 55
           +LK L +      + +L       G+S L+ L+L    + G+     +      L  L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 56  SGNKFNS--SILSSLTALS--SLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEI-- 109
               + +  + L+ L       L+ L++        F  +++     L  LD+SDN    
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 110 -DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL-HSIGSFPSLKTLYLKSNNFAKTVTTT 167
              L+          L+ L L    +   S V      +   L+ L L  N+  +     
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL-RDAAGA 246

Query: 168 QGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEV 227
                   L  L +     +  +P  L     L VL +  N+L     +     L  +  
Sbjct: 247 PSCDWPSQLNSLNLSFTG-LKQVPKGL--PAKLSVLDLSYNRLD---RNPSPDELPQVGN 300

Query: 228 LLLSNNHFQIP 238
           L L  N F   
Sbjct: 301 LSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 47/275 (17%), Positives = 82/275 (29%), Gaps = 42/275 (15%)

Query: 194 LANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF--QIPISLEPFFNYSKLK 251
                SL  L    +        + ++   S++ L +       +I          S L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 252 IFH-ANNSLSG--PFRLPTRSRKNIIALDISYNKLQG---HIPVEIGKVLPNLGFLSITF 305
                N  ++G  P  L   +  ++  L++           +      + P L  LSI  
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 306 NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF---NLEYLLLSNN---SLQG 359
                          +L  LDLS+N   GE     A+       L+ L L N    +  G
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 360 QLFSKKNNLTKLKRLNLDGNHFIGDIPESL-SNCSSLQGLYISDNDITGSIPTWIGNISF 418
              +      +L+ L+L  N              S L  L +S   +             
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK------------ 266

Query: 419 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
                     +   +P++      L +LDLS N +
Sbjct: 267 ---------QVPKGLPAK------LSVLDLSYNRL 286

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 37/169 (21%), Positives = 54/169 (31%), Gaps = 17/169 (10%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGM------NMLESLD 54
              LK L ++     N     +    +L  L L+ N   G   +           L+ L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 55  LSGNKFNS---SILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDN 111
           L      +      +   A   L+ L+L     +        D  S L  L++S   +  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 112 LVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160
             VPK      KL  LDLS  R+             P +  L LK N F
Sbjct: 268 --VPKGL--PAKLSVLDLSYNRLDRNPSPDE----LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 12/177 (6%)

Query: 295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF-NLEYLLLS 353
           L  L   +    +           ++ L  L L N ++TG  P  L      +L  L L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 354 NNSLQGQLFS----KKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI 409
           N S   +       ++     LK L++   H +    E +    +L  L +SDN   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 410 PTWI----GNISFLDAIIMPDNHLE---GPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
                        L  + + +  +E   G   +       L+ LDLS N++  +  +
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 37/225 (16%), Positives = 65/225 (28%), Gaps = 21/225 (9%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLS--SLKNLSLAYNRLEGSINIEGMNM------LES 52
           +S L+ L L +     +    L   +   L  L+L                      L+ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 53  LDLSGNKFNSSILSSLTALSSLRKLNL---MATGFKGTFDVQELDSLSNLEELDMSDNEI 109
           L ++     +     +    +L  L+L      G +G            L+ L + +  +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 110 DNL--VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 167
           +    V         +L+ LDLS   +RD +           L +L L      K V   
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP-SQLNSLNLSFTGL-KQVPK- 270

Query: 168 QGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG 212
                   L  L +  N  +   P     L  +  L +  N    
Sbjct: 271 ---GLPAKLSVLDLSYNR-LDRNPSPD-ELPQVGNLSLKGNPFLD 310

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 39/234 (16%), Positives = 89/234 (38%), Gaps = 20/234 (8%)

Query: 19  LSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN 78
           +    GL++    +L    +   ++ + ++ +++ +   +   S  L+ +   ++L++L+
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 79  LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 138
           L         D+  L  L+ LEEL ++ N + NL           L  L L    +RD  
Sbjct: 70  LSHNQIS---DLSPLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLFLDNNELRD-- 120

Query: 139 KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLT 198
               S+    +L+ L +++N     + +   L  L  L+ L +  N+ I +    L  L 
Sbjct: 121 --TDSLIHLKNLEILSIRNNK----LKSIVMLGFLSKLEVLDLHGNE-ITNTG-GLTRLK 172

Query: 199 SLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKI 252
            +  + +   +   N        L     +   +  +  P  +    +Y    +
Sbjct: 173 KVNWIDLTGQKCV-NEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.4 bits (173), Expect = 8e-14
 Identities = 33/159 (20%), Positives = 70/159 (44%), Gaps = 15/159 (9%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           LS ++  +  +++  +  L+ +   ++LK L L++N++     ++ +  LE L ++ N+ 
Sbjct: 40  LSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRL 97

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
            +  L+ + +   L +L L     +   D   L  L NLE L + +N++ ++        
Sbjct: 98  KN--LNGIPSA-CLSRLFLDNNELR---DTDSLIHLKNLEILSIRNNKLKSI---VMLGF 148

Query: 121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN 159
           L KL  LDL G  I +       +     +  + L    
Sbjct: 149 LSKLEVLDLHGNEITN----TGGLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 11/136 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
            +NLK L LSHN    S LS L  L+ L+ LS+  NRL+    I     L  L L  N+ 
Sbjct: 62  FTNLKELHLSHN--QISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNEL 118

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG 120
                 SL  L +L  L++     K    +  L  LS LE LD+  NEI N         
Sbjct: 119 RD--TDSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEITNT---GGLTR 170

Query: 121 LRKLRFLDLSGLRIRD 136
           L+K+ ++DL+G +  +
Sbjct: 171 LKKVNWIDLTGQKCVN 186

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 44/244 (18%), Positives = 79/244 (32%), Gaps = 50/244 (20%)

Query: 194 LANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIF 253
              L +    ++    +T          L+ ++     N++ Q   SL     ++ LK  
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 254 HANN----SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFN 309
           H ++     LS    L       +  L ++ N+L         K L  +           
Sbjct: 69  HLSHNQISDLSPLKDL-----TKLEELSVNRNRL---------KNLNGIPSAC------- 107

Query: 310 GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLT 369
                       L  L L NN+L     + L     NLE L + NN L+         L+
Sbjct: 108 ------------LSRLFLDNNELRD--TDSLI-HLKNLEILSIRNNKLKS--IVMLGFLS 150

Query: 370 KLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL 429
           KL+ L+L GN  I +    L+    +  + ++          +   +   + +  PD   
Sbjct: 151 KLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

Query: 430 EGPI 433
             P 
Sbjct: 209 ISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 17/183 (9%)

Query: 271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN 330
            N +  ++    +   +  +    L  +   +   +  N    +      +L  L LS+N
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNS--NIQSLAGMQFFTNLKELHLSHN 73

Query: 331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLS 390
           Q++ ++   L      LE L ++ N L+            L RL LD N  + D  +SL 
Sbjct: 74  QIS-DL-SPLK-DLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNE-LRDT-DSLI 125

Query: 391 NCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSK 450
           +  +L+ L I +N +  SI   +G +S L+ + +  N +         +L  +  +DL+ 
Sbjct: 126 HLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181

Query: 451 NNI 453
              
Sbjct: 182 QKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 16/138 (11%)

Query: 318 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLD 377
            + + +  +L    +T  + +        ++     N+++Q    +     T LK L+L 
Sbjct: 17  GLANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLS 71

Query: 378 GNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISF--LDAIIMPDNHLEGPIPS 435
            N  I D+   L + + L+ L ++ N +       +  I    L  + + +N L      
Sbjct: 72  HNQ-ISDL-SPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNELRDT--D 122

Query: 436 EFCQLDYLEILDLSKNNI 453
               L  LEIL +  N +
Sbjct: 123 SLIHLKNLEILSIRNNKL 140

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 6e-15
 Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 40/221 (18%)

Query: 198 TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEP--FFNYSKLKIFHA 255
            S + L +  N L  +L S        ++VL LS    Q   ++E   + + S L     
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLST--- 80

Query: 256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS- 314
                               L ++ N +Q  + +     L +L  L         S+ + 
Sbjct: 81  --------------------LILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENF 118

Query: 315 SFGDMNSLIYLDLSNNQLTGEIPEHLA-MGCFNLEYLLLSNN---SLQGQLFSKKNNLTK 370
             G + +L  L++++N +              NLE+L LS+N   S+        + +  
Sbjct: 119 PIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 371 LK-RLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP 410
           L   L+L  N  +  I         L+ L +  N +  S+P
Sbjct: 178 LNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLK-SVP 216

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 20/217 (9%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI---EGMNMLESLDLSGN 58
            + K LDLS N   +    S      L+ L L+   ++ +I     + ++ L +L L+GN
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFK----GTFDVQELDSLSNLEELDMSDNEIDNLVV 114
              S  L + + LSSL+KL  + T                 L  L+EL+++ N I +  +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFKL 141

Query: 115 PKDYRGLRKLRFLDLSGLRIRD-GSKVLHSIGSFPSLK-TLYLKSNNFAKTVTTTQGLCE 172
           P+ +  L  L  LDLS  +I+      L  +   P L  +L L  N          G  +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN---FIQPGAFK 198

Query: 173 LVHLQDLYIDRNDFIGSLPW-CLANLTSLRVLHVPDN 208
            + L++L +D N  + S+P      LTSL+ + +  N
Sbjct: 199 EIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 33/151 (21%)

Query: 313 PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLT 369
             SF     L  LDLS  ++   I +       +L  L+L+ N   SL    FS    L+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS---GLS 100

Query: 370 KLKRLNLDGNHFIGDIPESL-SNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNH 428
            L++L     + +  +      +  +L+ L ++ N I  S                    
Sbjct: 101 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQ-SFK------------------ 140

Query: 429 LEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
               +P  F  L  LE LDLS N I  S+  
Sbjct: 141 ----LPEYFSNLTNLEHLDLSSNKIQ-SIYC 166

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.6 bits (178), Expect = 4e-14
 Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 15/143 (10%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS-SFGDMNSLIYLDLSNNQLTG 334
           LD+S+N L           L NL  L ++ N  N  I S +F  + +L YLDLS+N L  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 335 EIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPE---- 387
            + E L      LE LLL NN    +    F    ++ +L++L L  N  I   P     
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQ-ISRFPVELIK 157

Query: 388 SLSNCSSLQGLYISDNDITGSIP 410
             +    L  L +S N +   +P
Sbjct: 158 DGNKLPKLMLLDLSSNKLK-KLP 179

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 49/206 (23%), Positives = 71/206 (34%), Gaps = 39/206 (18%)

Query: 2   SNLKFLDLSHNSFNN-SVLSSLAGLSSLKNLSLAYNRLEGSINI---EGMNMLESLDLSG 57
           S    LDLSHN+ +      +   L++L +L L++N L   I+      +  L  LDLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
           N         L  L                F       L  LE L + +N I  +     
Sbjct: 98  NH--------LHTLDE------------FLF-----SDLQALEVLLLYNNHIVVV-DRNA 131

Query: 118 YRGLRKLRFLDLSGLRIRD-GSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176
           +  + +L+ L LS  +I     +++      P L  L L SN   K   T          
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 177 QDLYIDRNDFIGSLPW-CLANLTSLR 201
             LY+  N      P  C   L  L 
Sbjct: 192 NGLYLHNN------PLECDCKLYQLF 211

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 5e-11
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 17/162 (10%)

Query: 97  SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 153
           S    LD+S N +  L        L  L  L LS   +      + S  +F   P+L+ L
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----FISS-EAFVPVPNLRYL 93

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CLANLTSLRVLHVPDNQLTG 212
            L SN+            +L  L+ L +  N  I  +      ++  L+ L++  NQ++ 
Sbjct: 94  DLSSNHL--HTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS- 149

Query: 213 NLSS---SPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLK 251
                       L  + +L LS+N  +  + L          
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWV 190

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 8e-10
 Identities = 39/174 (22%), Positives = 59/174 (33%), Gaps = 25/174 (14%)

Query: 50  LESLDLSGNKFNSSILS--SLTALSSLRKLNLMATGFK----GTFDVQELDSLSNLEELD 103
              LDLS N   S + +  + T L++L  L L            F       + NL  LD
Sbjct: 41  TALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-----PVPNLRYLD 94

Query: 104 MSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLYLKSNNF 160
           +S N +  L     +  L+ L  L L    I     V+    +F     L+ LYL  N  
Sbjct: 95  LSSNHLHTL-DEFLFSDLQALEVLLLYNNHI----VVVDR-NAFEDMAQLQKLYLSQNQI 148

Query: 161 AKTVTTT-QGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGN 213
           ++      +   +L  L  L +  N         L  L +     +    L  N
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL---YLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 13/138 (9%)

Query: 324 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ---GQLFSKKNNLTKLKRLNLDGNH 380
            LDLS+N L+    E       NL  LLLS+N L     + F     +  L+ L+L  NH
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSSNH 99

Query: 381 FIGDIP-ESLSNCSSLQGLYISDNDITGSIPTWI-GNISFLDAIIMPDNHLEGPIPSEFC 438
            +  +     S+  +L+ L + +N I   +      +++ L  + +  N +         
Sbjct: 100 -LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 439 QLDY---LEILDLSKNNI 453
             +    L +LDLS N +
Sbjct: 158 DGNKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 31/165 (18%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN---IEGMNMLESLDLSG 57
           L+NL  L LSHN  N     +   + +L+ L L+ N L  +++      +  LE L L  
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYN 121

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLV--VP 115
           N            +  +          +  F     + ++ L++L +S N+I      + 
Sbjct: 122 NH-----------IVVVD---------RNAF-----EDMAQLQKLYLSQNQISRFPVELI 156

Query: 116 KDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160
           KD   L KL  LDLS  +++                 LYL +N  
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 37/211 (17%)

Query: 198 TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN 257
              + L +  N+L+ +L S     LT + +L L++N  Q   +L          IF    
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPA-------GIFKELK 85

Query: 258 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSS-F 316
           +L                L ++ NKLQ  +P+ +   L NL  L +  N    S+P   F
Sbjct: 86  NLE--------------TLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF 129

Query: 317 GDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQGQLFSKKNNLTKLK 372
             +  L YL L  N+L   +P+    G F    +L+ L L NN L+       + LT+LK
Sbjct: 130 DSLTKLTYLSLGYNELQ-SLPK----GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184

Query: 373 RLNLDGNHFIGDIPESLSNCSSLQGLYISDN 403
            L LD N        +  +   L+ L + +N
Sbjct: 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 59/222 (26%), Positives = 87/222 (39%), Gaps = 35/222 (15%)

Query: 138 SKVLHSI--GSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLP-WCL 194
           SK L +I        K L L+SN  +   +       L  L+ LY++ N  + +LP    
Sbjct: 25  SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKA--FHRLTKLRLLYLNDNK-LQTLPAGIF 81

Query: 195 ANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH 254
             L +L  L V DN+L   L       L ++  L L  N  +   SL P       ++F 
Sbjct: 82  KELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK---SLPP-------RVFD 130

Query: 255 ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS 314
              SL+            +  L + YN+LQ  +P  +   L +L  L +  N     +P 
Sbjct: 131 ---SLT-----------KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPE 174

Query: 315 S-FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 355
             F  +  L  L L NNQL   +PE        L+ L L  N
Sbjct: 175 GAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 55/236 (23%), Positives = 89/236 (37%), Gaps = 61/236 (25%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINI-EGMNMLESLDLSGNK 59
           ++ K LDL  N  ++    +   L+ L+ L L  N+L+     I + +  LE+L ++ NK
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD-Y 118
                   L AL              G F     D L NL EL +  N++ +L  P   +
Sbjct: 97  --------LQALPI------------GVF-----DQLVNLAELRLDRNQLKSL--PPRVF 129

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
             L KL +L L    ++                   L    F K          L  L++
Sbjct: 130 DSLTKLTYLSLGYNELQS------------------LPKGVFDK----------LTSLKE 161

Query: 179 LYIDRNDFIGSLP-WCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
           L +  N  +  +P      LT L+ L + +NQL   +       L  +++L L  N
Sbjct: 162 LRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 28/171 (16%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSL-----AGLSSLKNLSLAYNRLEGSI--NI-EGMNMLES 52
           L+ L+ L L+ N      L +L       L +L+ L +  N+L+ ++   + + +  L  
Sbjct: 60  LTKLRLLYLNDNK-----LQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAE 113

Query: 53  LDLSGNKFNS---SILSSLTALSSLR-KLNLMATGFKGTFDVQELDSLSNLEELDMSDNE 108
           L L  N+  S    +  SLT L+ L    N + +  KG F     D L++L+EL + +N+
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF-----DKLTSLKELRLYNNQ 168

Query: 109 IDNLVVPKD-YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSN 158
           +  +  P+  +  L +L+ L L   +++       +  S   LK L L+ N
Sbjct: 169 LKRV--PEGAFDKLTELKTLKLDNNQLK--RVPEGAFDSLEKLKMLQLQEN 215

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 5e-13
 Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 13/162 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLS--------SLAGLSSLKNLSLAYNRLEGSINIEGMNMLES 52
            S LK +D    ++ + + S             + ++ L LA+  L    ++E + ++  
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTH 467

Query: 53  LDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNL 112
           LDLS N+   ++  +L AL  L  L       +   +V  + +L  L+EL + +N +   
Sbjct: 468 LDLSHNRL-RALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLCNNRLQQS 523

Query: 113 VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGS-FPSLKTL 153
              +      +L  L+L G  +     +   +    PS+ ++
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 38/240 (15%), Positives = 80/240 (33%), Gaps = 14/240 (5%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFN 61
              + +    +S    VL         ++ +         +++E   +L+S   S  +  
Sbjct: 316 HTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQ 375

Query: 62  S----SILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLV-VPK 116
                +    LT +  +R L+ +    +       L ++  +    + D     L+    
Sbjct: 376 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV 435

Query: 117 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176
                  +R L L+   +      L  +     +  L L  N           L  L  L
Sbjct: 436 LKMEYADVRVLHLAHKDLTV----LCHLEQLLLVTHLDLSHNRLR---ALPPALAALRCL 488

Query: 177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236
           + L    N  + ++   +ANL  L+ L + +N+L  + +  PL+    + +L L  N   
Sbjct: 489 EVLQASDN-ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 53/356 (14%), Positives = 106/356 (29%), Gaps = 20/356 (5%)

Query: 100 EELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN 159
           +EL++  N       P D       R+L    L   +   VL  +        L +  + 
Sbjct: 210 KELELVQNAFF--TDPNDQSAWFYHRWL----LGRAEPHDVLCCVHVSREEACLSVCFSR 263

Query: 160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPL 219
                +    L  +V    L ++     G        L  L    + D            
Sbjct: 264 PLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWT 323

Query: 220 MHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDIS 279
              +  E +LL +                +        S      L +      +  +  
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRC-ELSVEKSTVLQSELESCKELQELEPENK 382

Query: 280 YNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEH 339
           +  L   + +     L         F+      P     ++ L    L  N +       
Sbjct: 383 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK----- 437

Query: 340 LAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLY 399
             M   ++  L L++  L   +      L  +  L+L  N  +  +P +L+    L+ L 
Sbjct: 438 --MEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQ 492

Query: 400 ISDNDITGSIPTWIGNISFLDAIIMPDNHLEG-PIPSEFCQLDYLEILDLSKNNIA 454
            SDN +  ++   + N+  L  +++ +N L+             L +L+L  N++ 
Sbjct: 493 ASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.8 bits (166), Expect = 7e-13
 Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 63/217 (29%)

Query: 198 TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN 257
               +LH+ +N L    S + LM  T +  L L          L+       L       
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGT----- 81

Query: 258 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFG 317
                             LD+S+N+LQ                          S+P    
Sbjct: 82  ------------------LDLSHNQLQ--------------------------SLPLLGQ 97

Query: 318 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTKLKRL 374
            + +L  LD+S N+LT  +P     G   L+ L L  N   +L   L +      KL++L
Sbjct: 98  TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP---TPKLEKL 153

Query: 375 NLDGNHFIGDIPESL-SNCSSLQGLYISDNDITGSIP 410
           +L  N+ + ++P  L +   +L  L + +N +  +IP
Sbjct: 154 SLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIP 188

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 51/210 (24%), Positives = 71/210 (33%), Gaps = 39/210 (18%)

Query: 174 VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
                L++  N         L   T L  L++   +LT          L  +  L LS+N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 234 HFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGK 293
             Q                     SL    +           LD+S+N+L   +P+   +
Sbjct: 88  QLQ---------------------SLPLLGQTLPALTV----LDVSFNRLT-SLPLGALR 121

Query: 294 VLPNLGFLSITFNAFNGSIPSS-FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 352
            L  L  L +  N    ++P         L  L L+NN LT E+P  L  G  NL+ LLL
Sbjct: 122 GLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179

Query: 353 SNNSLQ---GQLFSKKNNLTKLKRLNLDGN 379
             NSL       F        L    L GN
Sbjct: 180 QENSLYTIPKGFF----GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 46/201 (22%), Positives = 72/201 (35%), Gaps = 34/201 (16%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFN 61
            +   L LS N      L++L   + L  L+L    L        + +L +LDLS N+  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL- 89

Query: 62  SSILSSLTALSSLRKLNL----MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
            S+      L +L  L++    + +   G         L  L+EL +  NE+  L  P  
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-----RGLGELQELYLKGNELKTL--PPG 142

Query: 118 -YRGLRKLRFLDLSGLRIRDGSKVLHSI--GSF---PSLKTLYLKSNNFAKTVTTTQGLC 171
                 KL  L L+          L  +  G      +L TL L+ N+     T  +G  
Sbjct: 143 LLTPTPKLEKLSLANNN-------LTELPAGLLNGLENLDTLLLQENSLY---TIPKGFF 192

Query: 172 ELVHLQDLYIDRNDFIGSLPW 192
               L   ++  N      PW
Sbjct: 193 GSHLLPFAFLHGN------PW 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 35/137 (25%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 324 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIG 383
            L LS N L         M    L  L L    L          L  L  L+L  N  + 
Sbjct: 35  ILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ-LQ 90

Query: 384 DIPESLSNCSSLQGLYISDNDITGSIPTWI-GNISFLDAIIMPDNHLEGPIPSEFCQLDY 442
            +P       +L  L +S N +T S+P      +  L  + +  N L+   P        
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 443 LEILDLSKNNIAGSLPS 459
           LE L L+ NN+   LP+
Sbjct: 150 LEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 20/140 (14%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE-----GMNMLESLDL 55
           L  L  LDLSHN    S+      L +L  L +++NRL    ++      G+  L+ L L
Sbjct: 76  LPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT---SLPLGALRGLGELQELYL 131

Query: 56  SGNKFNSSILSSLTALSSLRKLNLMATGFK----GTFDVQELDSLSNLEELDMSDNEIDN 111
            GN+  +     LT    L KL+L          G       + L NL+ L + +N +  
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL-----NGLENLDTLLLQENSLYT 186

Query: 112 LVVPKDYRGLRKLRFLDLSG 131
             +PK + G   L F  L G
Sbjct: 187 --IPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 30/145 (20%), Positives = 47/145 (32%), Gaps = 32/145 (22%)

Query: 315 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL 374
               + S + ++     LT  +P  L     +   L LS N L     +     T+L +L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 375 NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIP 434
           NLD    +  +         L  L +S N +                           +P
Sbjct: 61  NLDRAE-LTKLQVD-GTLPVLGTLDLSHNQLQS-------------------------LP 93

Query: 435 SEFCQLDYLEILDLSKNNIAGSLPS 459
                L  L +LD+S N +  SLP 
Sbjct: 94  LLGQTLPALTVLDVSFNRLT-SLPL 117

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 9/201 (4%)

Query: 264 RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSS-FGDMNSL 322
            +P+   +N I L     KL+  I         +L  + I+ N     I +  F ++  L
Sbjct: 23  EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 323 IYLDLSN-NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHF 381
             + +   N L   I         NL+YLL+SN  ++      K +  +   L++  N  
Sbjct: 82  HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 382 IGDIPE-SLSNCSS-LQGLYISDNDITGSIPTWI-GNISFLDAIIMPDNHLEGPIPSEFC 438
           I  I   S    S     L+++ N I   I           +  +  +N+LE      F 
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 439 QLDYLEILDLSKNNIAGSLPS 459
                 ILD+S+  I  SLPS
Sbjct: 200 GASGPVILDISRTRIH-SLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 44/238 (18%), Positives = 77/238 (32%), Gaps = 17/238 (7%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIE---GMNMLESLDLSGN 58
            N   L             + +G   L+ + ++ N +   I  +    +  L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 59  KFNSSILSS-LTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
                I       L +L+ L +  TG K                LD+ DN   + +    
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 118 YRGLR-KLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL 176
           + GL  +   L L+   I+   ++ +S  +   L  L L  NN  + +            
Sbjct: 149 FVGLSFESVILWLNKNGIQ---EIHNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGP 204

Query: 177 QDLYIDRNDFIGSLP-WCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
             L I R   I SLP + L NL  LR     + +         L  L ++    L+  
Sbjct: 205 VILDISRTR-IHSLPSYGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 4e-11
 Identities = 42/268 (15%), Positives = 82/268 (30%), Gaps = 51/268 (19%)

Query: 147 FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLP-WCLANLTSLRVLHV 205
             +   L          V           L+ + I +ND +  +     +NL  L  + +
Sbjct: 29  PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 206 PD-NQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH--ANNSLSGP 262
              N L   ++     +L +++ LL+SN   +  +      +  +  +     N ++   
Sbjct: 87  EKANNLL-YINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIH-- 142

Query: 263 FRLPTRS----RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGD 318
             +   S        + L ++ N +Q                  I  +AFNG+       
Sbjct: 143 -TIERNSFVGLSFESVILWLNKNGIQ-----------------EIHNSAFNGT------- 177

Query: 319 MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNNLTKLKRLN 375
                     NN L  E+P  +  G      L +S     SL         NL KL+  +
Sbjct: 178 -QLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARS 232

Query: 376 LDGNHFIGDIPESLSNCSSLQGLYISDN 403
                 +     +L    +L    ++  
Sbjct: 233 TYNLKKLP----TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 15/185 (8%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335
                +K+   IP ++     N   L             +F     L  +++S N +   
Sbjct: 14  FLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 336 IPEHLAMGCFNLEYLLLSNN----SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPE-SLS 390
           I   +      L  + +        +  + F    NL  L+ L +     I  +P+    
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTG-IKHLPDVHKI 125

Query: 391 NCSSLQGLYISDNDITGSIP--TWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDL 448
           +      L I DN    +I   +++G       + +  N ++    S F      E+   
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185

Query: 449 SKNNI 453
             NN+
Sbjct: 186 DNNNL 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 8e-09
 Identities = 46/287 (16%), Positives = 93/287 (32%), Gaps = 49/287 (17%)

Query: 51  ESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEID 110
                  +K  + I S L    +  +L  + T  +            +LE++++S N++ 
Sbjct: 12  RVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL 67

Query: 111 NLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI--GSF---PSLKTLYLKSNNFAKTVT 165
            ++    +  L KL  + +        +  L  I   +F   P+L+ L + +        
Sbjct: 68  EVIEADVFSNLPKLHEIRIE------KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121

Query: 166 TTQGLCELVHLQDLYIDRNDFIGSLPW-CLANLTS-LRVLHVPDNQLTGNLSSSPLMHLT 223
                   +    L I  N  I ++       L+    +L +  N +   + +S      
Sbjct: 122 VH--KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQ 178

Query: 224 SIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKL 283
             E+ L  NN+ +  +  + F   S   I                       LDIS  ++
Sbjct: 179 LDELNLSDNNNLEE-LPNDVFHGASGPVI-----------------------LDISRTRI 214

Query: 284 QGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN 330
              +P      L NL  L          +P +   + +L+   L+  
Sbjct: 215 H-SLPSY---GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 40/190 (21%)

Query: 1   LSNLKFLDLSH-NSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSG 57
           L  L  + +   N+       +   L +L+ L ++   ++    ++         LD+  
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 58  NKFNSSI----LSSLTALSSLRKLNLMATGFK----GTFDVQEL---------------- 93
           N    +I       L+       L L   G +      F+  +L                
Sbjct: 138 NINIHTIERNSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 94  ---DSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSL 150
                 S    LD+S   I +L        L+KLR      L      K L ++    +L
Sbjct: 196 DVFHGASGPVILDISRTRIHSL-PSYGLENLKKLRARSTYNL------KKLPTLEKLVAL 248

Query: 151 KTLYLKSNNF 160
               L +   
Sbjct: 249 MEASL-TYPS 257

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 39/194 (20%), Positives = 83/194 (42%), Gaps = 9/194 (4%)

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS-SFGDMNSLIYLDLSNN 330
           +   L +    L+  IP      LPN+  + ++ +     + S SF +++ + ++++ N 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQG-QLFSKKNNLTKLKRLNLDGNHFIGDIPESL 389
           +    I          L++L + N  L+     +K  +      L +  N ++  IP + 
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 390 --SNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSE-FCQL-DYLEI 445
               C+    L + +N  T S+  +  N + LDA+ +  N     I  + F  +     +
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 446 LDLSKNNIAGSLPS 459
           LD+S+ ++  +LPS
Sbjct: 210 LDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 45/251 (17%), Positives = 83/251 (33%), Gaps = 52/251 (20%)

Query: 141 LHSIGSFP-SLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CLANLT 198
           +  I S P S +TL L   +       +     L ++  +Y+  +  +  L      NL+
Sbjct: 23  IQRIPSLPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS 80

Query: 199 SLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNS 258
            +  + + + +    +    L  L  ++ L + N                 LK+F     
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT---------------GLKMFPDLTK 125

Query: 259 LSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL---------GFLSITFNAFN 309
           +                L+I+ N     IPV   + L N          GF S+   AFN
Sbjct: 126 VYSTDIF--------FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177

Query: 310 GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN-LEYLLLSNN---SLQGQLFSKK 365
           G+          L  + L+ N+    I +    G ++    L +S     +L  +     
Sbjct: 178 GT---------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE-- 226

Query: 366 NNLTKLKRLNL 376
            +L +L   N 
Sbjct: 227 -HLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 32/245 (13%), Positives = 75/245 (30%), Gaps = 48/245 (19%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI---EGMNMLESLDLSG 57
             + + L L           + + L ++  + ++ +     +       ++ +  +++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 58  NKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD 117
            +       +LT +                        L  L+ L + +  +        
Sbjct: 90  TR-------NLTYIDP------------DALK-----ELPLLKFLGIFNTGLKMFPDLTK 125

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSI--GSFPSL----KTLYLKSNNFAKTVTTTQGLC 171
                    L+++       +  + SI   +F  L     TL L +N F    +      
Sbjct: 126 VYSTDIFFILEIT------DNPYMTSIPVNAFQGLCNETLTLKLYNNGFT---SVQGYAF 176

Query: 172 ELVHLQDLYIDRNDFIGSLP-WCLANLTS-LRVLHVPDNQLTGNLSSSPLMHLTSIEVLL 229
               L  +Y+++N ++  +       + S   +L V    +T  L S  L HL     L+
Sbjct: 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE---LI 232

Query: 230 LSNNH 234
             N  
Sbjct: 233 ARNTW 237

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 63/446 (14%), Positives = 140/446 (31%), Gaps = 70/446 (15%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLA-GLSSLKNLSLAYNRLEGSINIEGMN-------MLES 52
            + L+ + L      +  L  +A    + K L L+        + +G+         L+ 
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKE 160

Query: 53  LDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD--NEID 110
           LDL  +  +      L+                        D+ ++L  L++S   +E+ 
Sbjct: 161 LDLRESDVDDVSGHWLSHFP---------------------DTYTSLVSLNISCLASEVS 199

Query: 111 NLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGL 170
              + +       L+ L L+     +    L      P L+ L               GL
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ--RAPQLEELGTGGYTAEVRPDVYSGL 257

Query: 171 CELV----HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIE 226
              +     L+ L    +     LP   +  + L  L++    +        L     ++
Sbjct: 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQ 317

Query: 227 VLLLSNNHFQIPISLEPFFNYSK----LKIFHANNSLSGPFRLPT--------RSRKNII 274
            L + +        LE   +  K    L++F +   +  P    T             + 
Sbjct: 318 RLWVLDYIED--AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375

Query: 275 ALDISYNKLQGHIPVEIGKVLPNL-----------GFLSITFNAFNGSIPSSFGDMNSLI 323
           ++     ++     + I +  PN+               +T    +    +       L 
Sbjct: 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435

Query: 324 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLS--NNSLQGQLFSKKNNLTKLKRLNLDGNHF 381
            L LS   LT ++ E++      +E L ++   +S  G +    +    L++L +    F
Sbjct: 436 RLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLG-MHHVLSGCDSLRKLEIRDCPF 493

Query: 382 IGD-IPESLSNCSSLQGLYISDNDIT 406
               +  + S   +++ L++S   ++
Sbjct: 494 GDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 59/432 (13%), Positives = 125/432 (28%), Gaps = 55/432 (12%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFN 61
             ++ ++L              G        +       +        LE + L      
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT-------WLEEIRLKRMVVT 118

Query: 62  SSILSSLTA-LSSLRKLNLMATGFKGTFDVQEL-DSLSNLEELDMSDNEIDNL---VVPK 116
              L  +     + + L L +     T  +  +  +  NL+ELD+ ++++D++    +  
Sbjct: 119 DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178

Query: 117 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF-PSLKTLYLKSNNFAKTVTTTQGLCELV- 174
                  L  L++S L        L  + +  P+LK+L L            + L  L+ 
Sbjct: 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV------PLEKLATLLQ 232

Query: 175 ---HLQDLY------IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSI 225
               L++L         R D    L   L+    LR L             +     + +
Sbjct: 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG-FWDAVPAYLPAVYSVCSRL 291

Query: 226 EVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQG 285
             L LS    Q    ++      KL+     + +             +  L  +   L+ 
Sbjct: 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE---------DAGLEVLASTCKDLR- 341

Query: 286 HIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF 345
            + V   +       +++T       + S       L  +     Q+T      +A    
Sbjct: 342 ELRVFPSEPFVMEPNVALT----EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397

Query: 346 NLEYLLLSNNSLQGQLFSKKN-----------NLTKLKRLNLDGNHFIGDIPESLSNCSS 394
           N+    L     +   +               +   L+RL+L G           +    
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKK 457

Query: 395 LQGLYISDNDIT 406
           ++ L ++    +
Sbjct: 458 MEMLSVAFAGDS 469

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 31/227 (13%), Positives = 66/227 (29%), Gaps = 19/227 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLA-GLSSLKNLSLAYNRLEGSINI-------------EG 46
              L+ +        N+ L ++A    ++    L     +    +             E 
Sbjct: 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430

Query: 47  MNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD 106
              L  L LSG   +       T    +  L++   G         L    +L +L++ D
Sbjct: 431 CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490

Query: 107 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT 166
               +  +  +   L  +R L +S   +  G+         P L    +       +   
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSSCSVSFGA-CKLLGQKMPKLNVEVIDERGAPDSRPE 549

Query: 167 TQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGN 213
           +  +  +   + +   R D     P  + N+     +      +T N
Sbjct: 550 SCPVERVFIYRTVAGPRFDM----PGFVWNMDQDSTMRFSRQIITTN 592

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 67.3 bits (164), Expect = 4e-12
 Identities = 65/444 (14%), Positives = 125/444 (28%), Gaps = 66/444 (14%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLA--GLSSLKNLSLAYNRLEGSINI----EGMNMLESLD 54
           L  LK +       ++  L  LA      L+ L L       +  +         +++L 
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170

Query: 55  LSGNKFNSSILSSLTALS----SLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEID 110
           +  + F+      L  L+    SL  LN   T F                   +S  +++
Sbjct: 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA-----------------KISPKDLE 213

Query: 111 NLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSN-NFAKTVTTTQG 169
            +      R  R L  + +    I +      +  +        L  +    +       
Sbjct: 214 TIA-----RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268

Query: 170 LCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLL 229
             +L  L   Y+  N+     P+       +R L +    L      + +    ++EVL 
Sbjct: 269 PRKLCRLGLSYMGPNEMPILFPFA----AQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324

Query: 230 LSNNHFQIPISLEPFFNY-SKLKIFHANNSLSGPFRLPTRSR-------------KNIIA 275
             N        LE    Y  +LK                                + +  
Sbjct: 325 TRNVIGDR--GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382

Query: 276 LDISYNKLQGHIPVEIGKVLPNL---------GFLSITFNAFNGSIPSSFGDMNSLIYLD 326
           + +  + +       IG  L NL             IT    +  + S       L    
Sbjct: 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442

Query: 327 LSNN--QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ-LFSKKNNLTKLKRLNLDGNHFIG 383
                  LT     ++     N+ ++LL       + L         L++L + G  F  
Sbjct: 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502

Query: 384 D-IPESLSNCSSLQGLYISDNDIT 406
             I  +++   SL+ L++     +
Sbjct: 503 RAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.8 bits (155), Expect = 5e-11
 Identities = 58/433 (13%), Positives = 117/433 (27%), Gaps = 69/433 (15%)

Query: 3   NLKFLDLSHNSFNNSVLSSLA----GLSSLKNLSLAYNRLEGSINIEGM-------NMLE 51
            +K L +  +SF+      L       +SL+ L+         I+ + +         L 
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK-ISPKDLETIARNCRSLV 223

Query: 52  SLDLSGNKF--NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEI 109
           S+ +   +         +   L      +L             L     L  L +S   +
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSL-NEDIGMPEKYMNLVFPRKLCRLGLSY--M 280

Query: 110 DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQG 169
               +P  +    ++R LDL    +         I   P+L+ L  ++      V   +G
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLYALLET-EDHCTLIQKCPNLEVLETRN------VIGDRG 333

Query: 170 LCELV----HLQDLYIDRNDFIGSLPWCLANLT------------SLRVLHVPDNQLTGN 213
           L  L      L+ L I+R      +      ++             L  + V  + +T N
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT-N 392

Query: 214 LS----SSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRS 269
            S     + L +L    ++LL                         +  L    R     
Sbjct: 393 ESLESIGTYLKNLCDFRLVLLDREERIT------------------DLPLDNGVRSLLIG 434

Query: 270 RKNIIALDISYN--KLQGHIPVEIGKVLPNLGFLSITFNAF-NGSIPSSFGDMNSLIYLD 326
            K +           L       IG+  PN+ ++ + +    +  +        +L  L+
Sbjct: 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494

Query: 327 LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ---GQLFSKKNNLTKLKRLNLDGNHFIG 383
           +     +            +L YL +           L         ++ +       + 
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVN 554

Query: 384 DIPESLSNCSSLQ 396
              E         
Sbjct: 555 QQGEIREMEHPAH 567

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 51/311 (16%), Positives = 96/311 (30%), Gaps = 51/311 (16%)

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELV---- 174
             LR+L+ +    + + D      +      L+TL L   +      TT GL  +V    
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG----FTTDGLLSIVTHCR 164

Query: 175 HLQDLYIDRNDF-------IGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEV 227
            ++ L ++ + F       +  L     +L  L        +++     +   +  S+  
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224

Query: 228 LLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHI 287
           + + +      + L  FF                             +L+      + ++
Sbjct: 225 VKVGDFEI---LELVGFFK-----------------AAANLEEFCGGSLNEDIGMPEKYM 264

Query: 288 PVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNL 347
            +   + L  LG   +  N     +P  F     +  LDL    L  E    L   C NL
Sbjct: 265 NLVFPRKLCRLGLSYMGPN----EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320

Query: 348 EYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLS------------NCSSL 395
           E L   N      L        +LKRL ++       + +                C  L
Sbjct: 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380

Query: 396 QGLYISDNDIT 406
           + + +  +DIT
Sbjct: 381 EYMAVYVSDIT 391

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 24/171 (14%), Positives = 54/171 (31%), Gaps = 16/171 (9%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLA-GLSSLKNLSLAYNRLEGSINIEGMNM---------- 49
              L+++ +  +   N  L S+   L +L +  L     E  I    ++           
Sbjct: 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436

Query: 50  -LESLDLSGNKFN---SSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMS 105
            L        +       +        ++R + L   G      ++      NL++L+M 
Sbjct: 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496

Query: 106 DNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD-GSKVLHSIGSFPSLKTLYL 155
                   +      L  LR+L + G R    G  ++     + +++ +  
Sbjct: 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 1   LSNLKFLDLSHNSFNN-SVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNK 59
            S++K L L ++  N   +         L+ LS     L    N+  +N L+ L+LS N+
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR 75

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
            +  +        +L  LNL     K    ++ L  L NL+ LD+ + E+ NL    DYR
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL---NDYR 132

Query: 120 G-----LRKLRFLD 128
                 L +L +LD
Sbjct: 133 ENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
           R    ++ L L   R  +G K+      F  L+ L   +      +T+   L +L  L+ 
Sbjct: 14  RTPSDVKELVLDNSRSNEG-KLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKK 68

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
           L +  N   G L        +L  L++  N++    +  PL  L +++ L L N 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 309 NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNL 368
            G +     +   L +L   N  LT  I  +L      L+ L LS+N + G L       
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLP-KLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 369 TKLKRLNLDGNHF--IGDIPESLSNCSSLQGLYISDNDIT 406
             L  LNL GN    +  I E L    +L+ L + + ++T
Sbjct: 88  PNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 25  LSSLKNLSL---AYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMA 81
            S +K L L     N  +     +    LE L        S  +++L  L+ L+KL L  
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELSD 73

Query: 82  TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 131
               G  +V   +   NL  L++S N+I +L   +  + L  L+ LDL  
Sbjct: 74  NRVSGGLEVLA-EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 95  SLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 154
           + S+++EL + ++  +   +        +L FL    + +      + ++     LK L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----IANLPKLNKLKKLE 70

Query: 155 LKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLP--WCLANLTSLRVLHVPDNQLT 211
           L  N  +  +      C   +L  L +  N  I  L     L  L +L+ L + + ++T
Sbjct: 71  LSDNRVSGGLEVLAEKCP--NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 325 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD 384
           L L N++      E L      LE+L   N  L     +    L KLK+L L  N   G 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELSDNRVSGG 79

Query: 385 IPESLSNCSSLQGLYISDNDIT 406
           +      C +L  L +S N I 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIK 101

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 38/162 (23%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGM-NMLESLDLSGNK 59
           L   K L LS N+     +SSL+G+ +L+ LSL  N ++   N++ + + LE L +S N+
Sbjct: 47  LKACKHLALSTNNI--EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
                                         +  ++ L NL  L MS+N+I N        
Sbjct: 105 IA---------------------------SLSGIEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 120 GLRKLRFLDLSGLRIRDGSKVLHS--------IGSFPSLKTL 153
            L KL  L L+G  + +  K  ++        +   P+LK L
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 15/172 (8%)

Query: 91  QELDSLSNLE--ELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 148
           ++    +  E  EL      I+ +        L+  + L LS   I      + S+    
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKM--DATLSTLKACKHLALSTNNIEK----ISSLSGME 70

Query: 149 SLKTLYLKSNNFAKTVTTTQGLCELV-HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPD 207
           +L+ L L  N         + L  +   L++L+I  N  I SL   +  L +LRVL++ +
Sbjct: 71  NLRILSLGRNLI----KKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSN 124

Query: 208 NQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSL 259
           N++T       L  L  +E LLL+ N            +  ++++     +L
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 312 IPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKL 371
           + ++   + +  +L LS N +  +I   L+ G  NL  L L  N ++ ++ +       L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 372 KRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT 406
           + L +  N  I  +   +    +L+ LY+S+N IT
Sbjct: 96  EELWISYNQ-IASL-SGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 31/133 (23%)

Query: 322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHF 381
            + L      +  ++   L+      ++L LS N+++    S  + +  L+ L+L  N  
Sbjct: 27  KVELHGMIPPIE-KMDATLS-TLKACKHLALSTNNIE--KISSLSGMENLRILSLGRNL- 81

Query: 382 IGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLD 441
           I  I    +   +L+ L+IS N I                       L G       +L 
Sbjct: 82  IKKIENLDAVADTLEELWISYNQIA---------------------SLSG-----IEKLV 115

Query: 442 YLEILDLSKNNIA 454
            L +L +S N I 
Sbjct: 116 NLRVLYMSNNKIT 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAG-LSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNK 59
            + ++ L L +   N+  +  L     +L+ LSL    L    N+  +  L+ L+LS N+
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR 82

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
               +      L +L  LNL     K    ++ L  L  L+ LD+ + E+ NL    DYR
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL---NDYR 139

Query: 120 G-----LRKLRFLD 128
                 L +L +LD
Sbjct: 140 ESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 5/116 (4%)

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
            R    +R L L   +  DG K+      F +L+ L L +      + +   L +L  L+
Sbjct: 20  NRTPAAVRELVLDNCKSNDG-KIEGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLK 74

Query: 178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
            L +  N   G L      L +L  L++  N+L    +  PL  L  ++ L L N 
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 4/105 (3%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335
           L +   K        +     NL FLS+       S+ S+   +  L  L+LS N++ G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFG- 85

Query: 336 IPEHLAMGCFNLEYLLLSNNSLQG-QLFSKKNNLTKLKRLNLDGN 379
             + LA    NL +L LS N L+          L  LK L+L   
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 310 GSIPSSFGDMNSLIYLDLSNNQLTG-EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNL 368
           G I     +  +L +L L N  L        L      L+ L LS N + G L      L
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP----KLKKLELSENRIFGGLDMLAEKL 94

Query: 369 TKLKRLNLDGNHFIGDIPE--SLSNCSSLQGLYISDNDIT 406
             L  LNL GN  + DI     L     L+ L + + ++T
Sbjct: 95  PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 325 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD 384
           L L N +      E L     NLE+L L N  L     S    L KLK+L L  N   G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSENRIFGG 86

Query: 385 IPESLSNCSSLQGLYISDNDIT 406
           +        +L  L +S N + 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 95  SLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLY 154
           + + + EL + + + ++  +         L FL L  + +      + ++   P LK L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----VSNLPKLPKLKKLE 77

Query: 155 LKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLP--WCLANLTSLRVLHVPDNQLT 211
           L  N     +          +L  L +  N  +  +     L  L  L+ L + + ++T
Sbjct: 78  LSENRIFGGLDMLAEKLP--NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVT 133

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSL-AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNK 59
               + LDL        V+ +L A L     +  + N +        +  L++L ++ N+
Sbjct: 18  AVRDRELDLRGY--KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR 75

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
                     AL  L +L L         D+  L SL +L  L +  N + N    K YR
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK---KHYR 132

Query: 120 G-----LRKLRFLD 128
                 + ++R LD
Sbjct: 133 LYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 6/126 (4%)

Query: 7   LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI-EGMNMLESLDLSGNKFNSSIL 65
           + L+      +  +        + L L   ++    N+   ++  +++D S N+     L
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--L 57

Query: 66  SSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLR 125
                L  L+ L +         +     +L +L EL +++N +  L        L+ L 
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEG-LDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 126 FLDLSG 131
           +L +  
Sbjct: 117 YLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 6/132 (4%)

Query: 31  LSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDV 90
           + L    +E +           LDL G K    I +    L     ++      +    +
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR---KL 57

Query: 91  QELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSL 150
                L  L+ L +++N I  +      + L  L  L L+   + +    L  + S  SL
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSL 115

Query: 151 KTLYLKSNNFAK 162
             L +  N    
Sbjct: 116 TYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 7/116 (6%)

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
           Y    + R LDL G +I     +  +         +    N     +    G   L  L+
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGAT---LDQFDAIDFSDNE----IRKLDGFPLLRRLK 67

Query: 178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN 233
            L ++ N            L  L  L + +N L       PL  L S+  L +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 314 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR 373
           + + +      LDL   ++   + E+L       + +  S+N ++         L +LK 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKT 68

Query: 374 LNLDGNHFIGDIPESL-SNCSSLQGLYISDNDIT 406
           L ++ N  I  I E L      L  L +++N + 
Sbjct: 69  LLVNNNR-ICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 17/128 (13%)

Query: 89  DVQELDSLSNLEELDMSDN---EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIG 145
              +  +     ELD+       I+NL        L +   +D S   IR     L    
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIPVIENLG-----ATLDQFDAIDFSDNEIRK----LDGFP 61

Query: 146 SFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLP--WCLANLTSLRVL 203
               LKTL + +N   +             L +L +  N  +  L     LA+L SL  L
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALP--DLTELILTNN-SLVELGDLDPLASLKSLTYL 118

Query: 204 HVPDNQLT 211
            +  N +T
Sbjct: 119 CILRNPVT 126

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS-SFGDMNSLIYLDLSNNQLTG 334
           + +  N ++  IP         L  + ++ N  +  +   +F  + SL  L L  N++T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 335 EIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSN 391
           E+P+ L  G F+L+ LLL+ N +       F     L  L  L+L  N        + S 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD---LHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 392 CSSLQGLYISDN 403
             ++Q ++++ N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 34/163 (20%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI---EGMNMLESLDLSGN 58
             +  + L  N+       + +    L+ + L+ N++   +     +G+  L SL L GN
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD- 117
           K     ++ L                   F     + L +L+ L ++ N+I+ L    D 
Sbjct: 91  K-----ITELPK---------------SLF-----EGLFSLQLLLLNANKINCL--RVDA 123

Query: 118 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160
           ++ L  L  L L   +++  +    +     +++T++L  N F
Sbjct: 124 FQDLHNLNLLSLYDNKLQ--TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 34/145 (23%)

Query: 93  LDSLSNLEELDMSDNEIDNLVVPKD-YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLK 151
                 L  +D+S+N+I  L    D ++GLR L  L L G +I +               
Sbjct: 52  FSPYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLVLYGNKITE--------------- 94

Query: 152 TLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLP-WCLANLTSLRVLHVPDNQL 210
              L  + F            L  LQ L ++ N  I  L      +L +L +L + DN+L
Sbjct: 95  ---LPKSLFEG----------LFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 211 TGNLSSSPLMHLTSIEVLLLSNNHF 235
              ++      L +I+ + L+ N F
Sbjct: 141 Q-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 32/138 (23%), Positives = 46/138 (33%), Gaps = 34/138 (24%)

Query: 325 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKNNLTKLKRLNLDGNHF 381
           + L  N +   IP         L  + LSNN +       F     L  L  L L GN  
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLYGNK- 91

Query: 382 IGDIPESL-SNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQL 440
           I ++P+SL     SLQ L ++ N I   +                           F  L
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKIN-CLR-----------------------VDAFQDL 127

Query: 441 DYLEILDLSKNNIAGSLP 458
             L +L L  N +  ++ 
Sbjct: 128 HNLNLLSLYDNKLQ-TIA 144

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 40/139 (28%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLA-----GLSSLKNLSLAYNRLEGSIN---IEGMNMLES 52
              L+ +DLS+N      +S LA     GL SL +L L  N++   +     EG+  L+ 
Sbjct: 55  YKKLRRIDLSNNQ-----ISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 53  LDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNL 112
           L L+ NK           ++ LR            F       L NL  L + DN++   
Sbjct: 109 LLLNANK-----------INCLR---------VDAF-----QDLHNLNLLSLYDNKLQT- 142

Query: 113 VVPKDYRGLRKLRFLDLSG 131
           +    +  LR ++ + L+ 
Sbjct: 143 IAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 30/156 (19%)

Query: 177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236
            ++ +++N      P   +    LR + + +NQ++  L+      L S+  L+L  N   
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 237 IPISLEP--FFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKV 294
               L    F     L++                       L ++ NK+   + V+  + 
Sbjct: 94  ---ELPKSLFEGLFSLQL-----------------------LLLNANKIN-CLRVDAFQD 126

Query: 295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN 330
           L NL  LS+  N        +F  + ++  + L+ N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 56/325 (17%), Positives = 89/325 (27%), Gaps = 56/325 (17%)

Query: 124 LRFLDLSGLRI--RDGSKVLHSIGSFPSLKTLYLKSNNF--------AKTVTTTQGLCEL 173
           +    L    I   D   V   +    S+K + L  N          ++ + + + L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 174 VHLQDLYIDRNDFIG-----SLPWCLANLTSLRVLHVPDNQLTGN----LSSSPLMHLTS 224
               D++  R           L   L     L  + + DN         L    L   T 
Sbjct: 66  -EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTP 123

Query: 225 IEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQ 284
           +E L L NN    P +         L+    N        L +        +    N+L+
Sbjct: 124 LEHLYLHNNGLG-PQAGAKIARA--LQELAVNKKAKNAPPLRS--------IICGRNRLE 172

Query: 285 GHIPVEIGKVL---PNLGFLSITFNAFN-----GSIPSSFGDMNSLIYLDLSNNQLTGEI 336
                E  K       L  + +  N          +         L  LDL +N  T   
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232

Query: 337 PEHLAMG---CFNLEYLLLSNNSLQ---GQLFS---KKNNLTKLKRLNLDGNHFIGD--- 384
              LA+      NL  L L++  L             K     L+ L L  N  I     
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAV 291

Query: 385 --IPESL-SNCSSLQGLYISDNDIT 406
             +   +      L  L ++ N  +
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 41/254 (16%), Positives = 79/254 (31%), Gaps = 49/254 (19%)

Query: 27  SLKNLSLAYNRL--EGSINI----EGMNMLESLDLSGNKFN----SSILSSLTALSSLRK 76
           S++  SL  + +  E   ++       + ++ + LSGN         +  ++ +   L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 77  LNL--MATGFKGTFDVQELDSLS-------NLEELDMSDNEIDNLVVPKDYRGLRK---L 124
                + TG       + L  L         L  + +SDN             L K   L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 125 RFLDLSGLRIRDGS-----------KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL 173
             L L    +   +            V     + P L+++    N       + +   + 
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL--ENGSMKEWAKT 182

Query: 174 V----HLQDLYIDRNDF-----IGSLPWCLANLTSLRVLHVPDNQLTGN----LSSSPLM 220
                 L  + + +N          L   LA    L+VL + DN  T      L+ + L 
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LK 241

Query: 221 HLTSIEVLLLSNNH 234
              ++  L L++  
Sbjct: 242 SWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 48/334 (14%), Positives = 98/334 (29%), Gaps = 75/334 (22%)

Query: 99  LEELDMSDNEIDN---LVVPKDYRGLRKLRFLDLSGLRIRD-GSKVL-HSIGSFPSLKTL 153
           +E   +  + I       V         ++ + LSG  I    ++ L  +I S   L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 154 YLKSNNFAKTVTTT--------QGLCELVHLQDLYIDRNDF----IGSLPWCLANLTSLR 201
                   +             Q L +   L  + +  N F       L   L+  T L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 202 VLHVPDNQ------------LTGNLSSSPLMHLTSIEVLLLSNNHFQ----IPISLEPFF 245
            L++ +N             L     +    +   +  ++   N  +       +     
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA----- 180

Query: 246 NYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGH-IPVEIGKVL---PNLGFL 301
                K F ++  L                + +  N ++   I   + + L     L  L
Sbjct: 181 -----KTFQSHRLLH--------------TVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 302 SITFNAFNG----SIPSSFGDMNSLIYLDLSNNQLTGE----IPEHLAMGCF-NLEYLLL 352
            +  N F      ++  +     +L  L L++  L+      + +  +      L+ L L
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281

Query: 353 SNNSLQ---GQLFSK--KNNLTKLKRLNLDGNHF 381
             N ++    +         +  L  L L+GN F
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 37/194 (19%), Positives = 62/194 (31%), Gaps = 35/194 (18%)

Query: 2   SNLKFLDLSHNSF-------------NNSVLSSLAGLSSLKNLSLAYNRL--EGSINI-- 44
           + L+ L L +N                 +V         L+++    NRL          
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 45  --EGMNMLESLDLSGNKFNSS-----ILSSLTALSSLRKLNLMATGF--KGTFDVQE-LD 94
             +   +L ++ +  N          +L  L     L+ L+L    F   G+  +   L 
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 95  SLSNLEELDMSDNEIDN-----LVVPKDYRGLRKLRFLDLSGLRIRD-GSKVLHSI--GS 146
           S  NL EL ++D  +       +V          L+ L L    I     + L ++    
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301

Query: 147 FPSLKTLYLKSNNF 160
            P L  L L  N F
Sbjct: 302 MPDLLFLELNGNRF 315

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 18/111 (16%)

Query: 301 LSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNN- 355
           L +  N F   +P    +   L  +DLSNN+++      L+   F     L  L+LS N 
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-----TLSNQSFSNMTQLLTLILSYNR 89

Query: 356 --SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPE-SLSNCSSLQGLYISDN 403
              +  + F     L  L+ L+L GN  I  +PE + ++ S+L  L I  N
Sbjct: 90  LRCIPPRTFDG---LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 21/120 (17%)

Query: 301 LSITFNAFNGSIPSS--FGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSN 354
           L +  N F   + ++  F  +  L  ++ SNN++T +I E    G F     +  +LL++
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEE----GAFEGASGVNEILLTS 90

Query: 355 N---SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPE-SLSNCSSLQGLYISDNDITGSIP 410
           N   ++Q ++F     L  LK L L  N  I  +   S    SS++ L + DN IT ++ 
Sbjct: 91  NRLENVQHKMFKG---LESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 27/160 (16%)

Query: 223 TSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNK 282
                L L+NN F +  +   F    +L+                        ++ S NK
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRK-----------------------INFSNNK 68

Query: 283 LQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSS-FGDMNSLIYLDLSNNQLTGEIPEHLA 341
           +   I     +    +  + +T N    ++    F  + SL  L L +N++T  +     
Sbjct: 69  IT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSF 125

Query: 342 MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHF 381
           +G  ++  L L +N +        + L  L  LNL  N F
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 29/152 (19%)

Query: 97  SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTL 153
               EL +++NE   L     ++ L +LR ++ S  +I D    +   G+F     +  +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD----IEE-GAFEGASGVNEI 86

Query: 154 YLKSNN--------FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW-CLANLTSLRVLH 204
            L SN         F            L  L+ L +  N  I  +       L+S+R+L 
Sbjct: 87  LLTSNRLENVQHKMFKG----------LESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLS 135

Query: 205 VPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236
           + DNQ+T  ++      L S+  L L  N F 
Sbjct: 136 LYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 49/171 (28%)

Query: 2   SNLKFLDLSHNSFNN-SVLSSLAGLSSLKNLSLAYNRLEGSINIE-----GMNMLESLDL 55
                L L++N F           L  L+ ++ + N++    +IE     G + +  + L
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT---DIEEGAFEGASGVNEILL 88

Query: 56  SGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVP 115
           + N+        L  +                F       L +L+ L +  N I  +   
Sbjct: 89  TSNR--------LENVQH------------KMF-----KGLESLKTLMLRSNRITCV--G 121

Query: 116 KD-YRGLRKLRFLDLSGLRIRDGSKVLHSI--GSF---PSLKTLYLKSNNF 160
            D + GL  +R L L   +       + ++  G+F    SL TL L +N F
Sbjct: 122 NDSFIGLSSVRLLSLYDNQ-------ITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 32/133 (24%)

Query: 325 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKNNLTKLKRLNLDGNHF 381
           L L+NN+ T      +      L  +  SNN +       F      + +  + L  N  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---ASGVNEILLTSNR- 92

Query: 382 IGDIPESL-SNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQL 440
           + ++   +     SL+ L +  N IT  +                           F  L
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRIT-CVG-----------------------NDSFIGL 128

Query: 441 DYLEILDLSKNNI 453
             + +L L  N I
Sbjct: 129 SSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN---IEGMNMLESLDLSG 57
           L  L+ ++ S+N   +    +  G S +  + L  NRLE ++     +G+  L++L L  
Sbjct: 56  LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRS 114

Query: 58  NKFNSSILSSLTALSSLRKLNL----MATGFKGTFDVQELDSLSNLEELDMSDN 107
           N+       S   LSS+R L+L    + T   G F     D+L +L  L++  N
Sbjct: 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF-----DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 31/152 (20%)

Query: 51  ESLDLSGNKFNS-SILSSLTALSSLRKLNLMATGFK----GTFDVQELDSLSNLEELDMS 105
             L L+ N+F           L  LRK+N           G F+       S + E+ ++
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-----GASGVNEILLT 89

Query: 106 DNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI--GSF---PSLKTLYLKSNNF 160
            N ++N+   K ++GL  L+ L L   R       +  +   SF    S++ L L  N  
Sbjct: 90  SNRLENV-QHKMFKGLESLKTLMLRSNR-------ITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 161 AKTVTTTQGLCELVHLQDLYIDRNDFIGSLPW 192
             TV        L  L  L +  N      P+
Sbjct: 142 -TTV-APGAFDTLHSLSTLNLLAN------PF 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 42/157 (26%), Positives = 61/157 (38%), Gaps = 20/157 (12%)

Query: 256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSS 315
           +  L+       R    +  L++ YN+LQ  +   +   L  LG L +  N    S+P  
Sbjct: 44  STGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA-SLPLG 101

Query: 316 -FGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQ----GQLFSKKN 366
            F  +  L  L L  NQL   +P     G F     L+ L L+ N LQ    G  F K  
Sbjct: 102 VFDHLTQLDKLYLGGNQLK-SLPS----GVFDRLTKLKELRLNTNQLQSIPAG-AFDK-- 153

Query: 367 NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDN 403
            LT L+ L+L  N        +      LQ + +  N
Sbjct: 154 -LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 58/230 (25%), Positives = 79/230 (34%), Gaps = 68/230 (29%)

Query: 177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236
           + L +               LT L  L++  NQL   LS+     LT +  L L+NN   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 237 IPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLP 296
              SL                   G F   T     +  L +  N+L+          LP
Sbjct: 97  ---SLPL-----------------GVFDHLT----QLDKLYLGGNQLKS---------LP 123

Query: 297 NLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLL 352
           +  F  +T                 L  L L+ NQL   IP     G F    NL+ L L
Sbjct: 124 SGVFDRLT----------------KLKELRLNTNQLQ-SIPA----GAFDKLTNLQTLSL 162

Query: 353 SNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISD 402
           S N LQ       + L KL+ + L GN F         +CS  + LY+S 
Sbjct: 163 STNQLQSVPHGAFDRLGKLQTITLFGNQF---------DCSRCEILYLSQ 203

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 16/161 (9%)

Query: 7   LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINI-EGMNMLESLDLSGNKFNS-- 62
           LDL          ++  GL+ L  L+L YN+L+  S  + + +  L +L L+ N+  S  
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 63  -SILSSLTALSSLR-KLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKD-YR 119
             +   LT L  L    N + +   G F     D L+ L+EL ++ N++ ++  P   + 
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVF-----DRLTKLKELRLNTNQLQSI--PAGAFD 152

Query: 120 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160
            L  L+ L LS  +++  S    +      L+T+ L  N F
Sbjct: 153 KLTNLQTLSLSTNQLQ--SVPHGAFDRLGKLQTITLFGNQF 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 27/194 (13%)

Query: 196 NLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH- 254
            L S+  +   ++ +    S   + +L ++  L L  N       +      + L     
Sbjct: 39  ELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKLH---DISALKELTNLTYLIL 92

Query: 255 ANNSLS----GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG 310
             N L     G F   T    N+  L +  N+LQ  +P  +   L NL +L++  N    
Sbjct: 93  TGNQLQSLPNGVFDKLT----NLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ- 146

Query: 311 SIPSS-FGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQGQLFSKK 365
           S+P   F  + +L  LDLS NQL   +PE    G F     L+ L L  N L+       
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQ-SLPE----GVFDKLTQLKDLRLYQNQLKSVPDGVF 201

Query: 366 NNLTKLKRLNLDGN 379
           + LT L+ + L  N
Sbjct: 202 DRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 52/244 (21%), Positives = 83/244 (34%), Gaps = 69/244 (28%)

Query: 7   LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILS 66
            +L   S   +   +   L+S+  +    + ++    I+ +  +  L L GNK     L 
Sbjct: 24  ANLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-----LH 76

Query: 67  SLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRF 126
            +                           L+NL  L ++ N++ +L     +  L  L+ 
Sbjct: 77  DI-----------------SAL-----KELTNLTYLILTGNQLQSL-PNGVFDKLTNLKE 113

Query: 127 LDLSGLRIRDGSKVLHSI--GSFPSL---KTLYLKSNN--------FAKTVTTTQGLCEL 173
           L L           L S+  G F  L     L L  N         F K          L
Sbjct: 114 LVLV-------ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK----------L 156

Query: 174 VHLQDLYIDRNDFIGSLPW-CLANLTSLRVLHVPDNQLTGNLSSSP---LMHLTSIEVLL 229
            +L +L +  N    SLP      LT L+ L +  NQL     S P      LTS++ + 
Sbjct: 157 TNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLK----SVPDGVFDRLTSLQYIW 211

Query: 230 LSNN 233
           L +N
Sbjct: 212 LHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 41/186 (22%)

Query: 198 TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH-AN 256
                 ++    +T    +     L SI+ ++ +N+  +   S++       ++      
Sbjct: 19  AETIKANLKKKSVT---DAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGG 72

Query: 257 NSLS--GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS 314
           N L      +  T        L ++ N+LQ  +P  +   L NL  L +  N    S+P 
Sbjct: 73  NKLHDISALKELTNLTY----LILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPD 126

Query: 315 S-FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR 373
             F  + +L YL+L++NQL                       SL   +F K   LT L  
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQ----------------------SLPKGVFDK---LTNLTE 161

Query: 374 LNLDGN 379
           L+L  N
Sbjct: 162 LDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 28/196 (14%)

Query: 51  ESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEID 110
              +L         ++     + L  ++ +         VQ +  L N+  L +  N++ 
Sbjct: 22  IKANLKKKS-----VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH 76

Query: 111 NLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI--GSF---PSLKTLYLKSNNFAKTVT 165
           ++      + L  L +L L           L S+  G F    +LK L L  N      +
Sbjct: 77  DISA---LKELTNLTYLIL-------TGNQLQSLPNGVFDKLTNLKELVLVENQLQ---S 123

Query: 166 TTQGLC-ELVHLQDLYIDRNDFIGSLP-WCLANLTSLRVLHVPDNQLTGNLSSSPLMHLT 223
              G+  +L +L  L +  N  + SLP      LT+L  L +  NQL  +L       LT
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLT 181

Query: 224 SIEVLLLSNNHFQ-IP 238
            ++ L L  N  + +P
Sbjct: 182 QLKDLRLYQNQLKSVP 197

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 7/96 (7%)

Query: 311 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN---SLQGQLFSKKNN 367
                     +L  L + N Q    +      G   L  L +  +    +    F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 368 LTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDN 403
             +L RLNL  N  +  +        SLQ L +S N
Sbjct: 79  TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 1   LSNLKFLDLSHNSFNNSV-LSSLAGLSSLKNLSLAYNRLEGSINIE---GMNMLESLDLS 56
             NL  L + +      + L  L GL  L+NL++  + L   +  +       L  L+LS
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88

Query: 57  GNKFNSSILSSLTALSSLRKLNL 79
            N    S+        SL++L L
Sbjct: 89  FNAL-ESLSWKTVQGLSLQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 28/118 (23%)

Query: 43  NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL 102
           ++ G   L  L +   +        L  L                        L  L  L
Sbjct: 26  HLPGAENLTELYIENQQ-------HLQHLEL------------RDL-----RGLGELRNL 61

Query: 103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 160
            +  + +   V P  +    +L  L+LS   +     +        SL+ L L  N  
Sbjct: 62  TIVKSGLRF-VAPDAFHFTPRLSRLNLSFNAL---ESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 26/93 (27%)

Query: 367 NLTKLKRLNLDGNHFIGDIP-ESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP 425
               L  L ++    +  +    L     L+ L I  + +   +                
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVA--------------- 72

Query: 426 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP 458
                   P  F     L  L+LS N +  SL 
Sbjct: 73  --------PDAFHFTPRLSRLNLSFNALE-SLS 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 87  TFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGS 146
              +  L    NL EL + + +    +  +D RGL +LR L +    +R       +   
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHF 78

Query: 147 FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDF 186
            P L  L L  N      + +    + + LQ+L +  N  
Sbjct: 79  TPRLSRLNLSFNALE---SLSWKTVQGLSLQELVLSGNPL 115

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 22/224 (9%)

Query: 13  SFNNSVLSSLAGLSSLKNLSLAYNRLE---GSINIEGMNMLESLDLSGNKFNSSILSSLT 69
           SF +  L+       ++++ L+ + +E       +   + L++L L G + +  I+++L 
Sbjct: 80  SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139

Query: 70  ALSSLRKLNL-MATGFKGTFDVQELDSLSNLEELDMS------DNEIDNLVVPKDYRGLR 122
             S+L +LNL   +GF        L S S L+EL++S      +  +   V         
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSE 195

Query: 123 KLRFLDLSGLRIRDGSKVLHSIGSF-PSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181
            +  L+LSG R       L ++    P+L  L L S++        Q   +L +LQ L +
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL-SDSVMLKNDCFQEFFQLNYLQHLSL 254

Query: 182 DRNDFIGSL-PWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTS 224
            R   I       L  + +L+ L      + G +    L  L  
Sbjct: 255 SRCYDIIPETLLELGEIPTLKTLQ-----VFGIVPDGTLQLLKE 293

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 24/171 (14%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNM-------LESL 53
            S L+ L L     ++ ++++LA  S+L  L+L+        +   +         L+ L
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTLLSSCSRLDEL 173

Query: 54  DLSG-NKFNSSILSSLTA--LSSLRKLNLMATGFKGTFDVQELDSLS----NLEELDMSD 106
           +LS    F    +    A    ++ +LNL  +G++      +L +L     NL  LD+SD
Sbjct: 174 NLSWCFDFTEKHVQVAVAHVSETITQLNL--SGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231

Query: 107 -NEIDNLVVPKDYRGLRKLRFLDLSG-LRIRDGSKVLHSIGSFPSLKTLYL 155
              + N    + ++ L  L+ L LS    I   +  L  +G  P+LKTL +
Sbjct: 232 SVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPET--LLELGEIPTLKTLQV 279

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNH 380
            + ++DLSN+ +       +   C  L+ L L    L   + +     + L RLNL G  
Sbjct: 94  RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153

Query: 381 FIGD--IPESLSNCSSLQGLYISD 402
              +  +   LS+CS L  L +S 
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLSW 177

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 7/145 (4%)

Query: 265 LPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIY 324
               S   +  +D+S + ++      I      L  LS+     +  I ++    ++L+ 
Sbjct: 87  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146

Query: 325 LDLSN-NQLTGEIPEHLAMGCFNLEYLLLSNNSL---QGQLFSKKNNLTKLKRLNLDG-N 379
           L+LS  +  +    + L   C  L+ L LS       +    +  +    + +LNL G  
Sbjct: 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206

Query: 380 HFIGD--IPESLSNCSSLQGLYISD 402
             +    +   +  C +L  L +SD
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSD 231

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 44/262 (16%), Positives = 77/262 (29%), Gaps = 27/262 (10%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFN 61
           S  + LDL+  + +  V   L     +          +          ++ +DLS +   
Sbjct: 47  SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 106

Query: 62  SSILSSLTA-LSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD-NEIDNLVVPKDYR 119
            S L  + +  S L+ L+L          V  L   SNL  L++S  +      +     
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165

Query: 120 GLRKLRFLDLSG-LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
              +L  L+LS      +    +       ++  L L              L  LV    
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR---KNLQKSDLSTLVR--- 219

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIP 238
                               +L  L + D+ +  N        L  ++ L LS  +  IP
Sbjct: 220 -----------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262

Query: 239 ISLEPFFNYSKLKIFHANNSLS 260
            +L        LK       + 
Sbjct: 263 ETLLELGEIPTLKTLQVFGIVP 284

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 15/116 (12%)

Query: 301 LSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLT---GEIPEHLAMGCFNLEYLLLSNN-- 355
           L +  N      P  F  + +L  L L +NQL      + + L      L  L L  N  
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT----QLTVLDLGTNQL 100

Query: 356 -SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP 410
             L   +F +   L  LK L +  N    ++P  +   + L  L +  N +  SIP
Sbjct: 101 TVLPSAVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 41/170 (24%), Positives = 65/170 (38%), Gaps = 35/170 (20%)

Query: 214 LSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNI 273
            +S P    T+ ++L L +N       LEP        +F +  +L              
Sbjct: 31  HASVPAGIPTNAQILYLHDNQIT---KLEP-------GVFDSLINLK------------- 67

Query: 274 IALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSS-FGDMNSLIYLDLSNNQL 332
             L +  N+L   +PV +   L  L  L +  N     +PS+ F  +  L  L +  N+L
Sbjct: 68  -ELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKL 124

Query: 333 TGEIPE---HLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGN 379
           T E+P     L     +L +L L  N L+       + L+ L    L GN
Sbjct: 125 T-ELPRGIERLT----HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQ---GQLFSKKNNL 368
           FG +  L+ L+L  NQLT  I        F    +++ L L  N ++    ++F     L
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEP----NAFEGASHIQELQLGENKIKEISNKMFLG---L 101

Query: 369 TKLKRLNLDGNHFIGDIPE-SLSNCSSLQGLYISDN 403
            +LK LNL  N  I  +   S  + +SL  L ++ N
Sbjct: 102 HQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 324 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG---QLFSKKNNLTKLKRLNLDGNH 380
            L L++N+L     + L     +L  L L  N L G     F      + ++ L L  N 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGENK 89

Query: 381 FIGDIPE----SLSNCSSLQGLYISDNDITGSIP 410
            I +I       L     L+ L + DN I+  + 
Sbjct: 90  -IKEISNKMFLGLHQ---LKTLNLYDNQIS-CVM 118

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 40/274 (14%), Positives = 86/274 (31%), Gaps = 43/274 (15%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGL-----SSLKNLSLAYNRL--EGSINIEGM-----NM 49
           +N+  L+LS N  +      L         ++  L L +N    + S   +         
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 50  LESLDLSGNKFN----SSILSSLTAL-SSLRKLNLMATGFKGTFDVQELDSL-----SNL 99
           + SL+L GN         ++  L A+ +++  LNL       + +  EL        +++
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASV 198

Query: 100 EELDMSDNEIDNLVVPKDYRGLR----KLRFLDLSGLRIRD-GSKVLHS-IGSFPSLKTL 153
             LD+S N +      +           +  L+L    +     + L     S   L+T+
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 154 YLKSNNF-----AKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANL-----TSLRVL 203
           YL  +        +          +  +  +  +  +   S    ++NL         V 
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 204 HVPDNQLT----GNLSSSPLMHLTSIEVLLLSNN 233
            + +  L        +   L     +   + +  
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 54/374 (14%), Positives = 114/374 (30%), Gaps = 84/374 (22%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGL-----SSLKNLSLAYNRL--EGSINIEGM-----NM 49
             +  LDLS N+  +     L        +S+ +L+L+ N L  + S  +  +       
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 50  LESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEI 109
           + SL+LSGN  +      L    +L  +                     +  LD+  N+ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELV--KTLAAIP------------------FTITVLDLGWNDF 121

Query: 110 DNLVVPKDYRGLRK----LRFLDLSGLRIRDG-----SKVLHSIGSFPSLKTLYLKSNNF 160
            +    +  +        +  L+L G  +         ++L +I +  ++ +L L+ NN 
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA--NVNSLNLRGNNL 179

Query: 161 AKTVTTTQGLCELV-----HLQDLYIDRNDF--IGSLPWCLA---NLTSLRVLHVPDNQL 210
                    L + +      +  L +  N                    +  L++  N L
Sbjct: 180 --ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237

Query: 211 TG---NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPT 267
            G            L  ++ + L  +  +  +S E       L     N           
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVK-NMSKEQC---KALGAAFPNI---------- 283

Query: 268 RSRKNIIALDISYNKLQGHIPVEIGKVL---------PNLGFLSITFNAFNGSIPSSFGD 318
              + II +D +  ++     + I  ++         P+L    + F   + +       
Sbjct: 284 ---QKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNI 340

Query: 319 MNSLIYLDLSNNQL 332
            + L     +   L
Sbjct: 341 PDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 44/337 (13%), Positives = 107/337 (31%), Gaps = 52/337 (15%)

Query: 93  LDSLSNLEELDMSDNEIDNLVVPKDYRGLRK----LRFLDLSGLRIRD-GSKVLHSI--G 145
                 +  LD+S N + ++   +  +        +  L+LSG  +    S  L  I   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 146 SFPSLKTLYLKSNNFAKTVTTTQGLCELV-----HLQDLYIDRNDF--IGSLPWCLA--- 195
              ++ +L L  N    +  ++  L + +      +  L +  NDF    S  +  A   
Sbjct: 78  IPANVTSLNLSGNFL--SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 196 NLTSLRVLHVPDNQLTGN----LSSSPLMHLTSIEVLLLSNNHFQ----IPISLEPFFNY 247
              S+  L++  N L       L         ++  L L  N+        ++       
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 248 SKLKIFH-ANNSLSGP-----FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL---PNL 298
           + +     + N L          + +    ++++L++  N L G     +  +     +L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 299 GFLSITFNAFNG-------SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG----CFNL 347
             + + ++           ++ ++F ++  +I +D +  ++       ++          
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 348 EYLLLSNNSL-----QGQLFSKKNNLTKLKRLNLDGN 379
           +   L N  L             N   +L+       
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 27/159 (16%)

Query: 321 SLIYLDLSNNQLTGE----IPEHLAMGCFNLEYLLLSNNSLQ---GQLFSK--KNNLTKL 371
           S+  L+L  N L  +    + + LA    N+  L L  N+L        +K   +    +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 372 KRLNLDGNHFIGD-----IPESL-SNCSSLQGLYISDNDITGS----IPTWIGNISFLDA 421
             L+L  N  +G      +     S  + +  L +  N + G     +     ++  L  
Sbjct: 199 TSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 422 IIMPDNHLEGP-------IPSEFCQLDYLEILDLSKNNI 453
           + +  + ++         + + F  +  + ++D +   I
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 12/129 (9%)

Query: 256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSS 315
            NSL            ++  L +  NKLQ  +P  +   L +L +L+++ N    S+P+ 
Sbjct: 37  TNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ-SLPNG 94

Query: 316 -FGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQGQLFSKKNNLTK 370
            F  +  L  L L+ NQL   +P+    G F     L+ L L  N L+       + LT 
Sbjct: 95  VFDKLTQLKELALNTNQLQ-SLPD----GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149

Query: 371 LKRLNLDGN 379
           L+ + L  N
Sbjct: 150 LQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 15/86 (17%)

Query: 301 LSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNN- 355
           L +  N+        F ++ SL  L L  N+L       L  G F    +L YL LS N 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-----LPNGVFNKLTSLTYLNLSTNQ 87

Query: 356 --SLQGQLFSKKNNLTKLKRLNLDGN 379
             SL   +F K   LT+LK L L+ N
Sbjct: 88  LQSLPNGVFDK---LTQLKELALNTN 110

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 311 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN------NSLQGQLFSK 364
            +P+   D   +  +D +++ +     +H+  G   +E + L          L+ +L   
Sbjct: 52  HLPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLE-RLSQL 109

Query: 365 KNNLTKLKRLNLDGNHFIGDI-PESLSNCSSLQGLYISD 402
           +N    +  + +     + D    +L +  +L+ L++SD
Sbjct: 110 ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 17/111 (15%)

Query: 301 LSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNS 356
           L +  N         F  +  L  L LS NQ+       L  G F     L  L L  N 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-----LPDGVFDKLTKLTILYLHENK 87

Query: 357 LQ---GQLFSKKNNLTKLKRLNLDGNHFIGDIPE-SLSNCSSLQGLYISDN 403
           LQ     +F K   LT+LK L LD N  +  +P+      +SLQ +++  N
Sbjct: 88  LQSLPNGVFDK---LTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 8e-05
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 16/153 (10%)

Query: 50  LESLDLSGNKFNSSILSSLTA--LSSLRKLNLMATGFKGTFD--------VQELDSLSNL 99
           L+SL++       S++  +    L +L KL L        FD        +   D   NL
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254

Query: 100 EELDMSDNEIDNLVVPK--DYRGLRKLRFLDLSGLRIRD--GSKVLHSIGSFPSLKTLYL 155
           + L + D E  N+VV    +   L +L  +D+S   + D     +L  +     LK + +
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314

Query: 156 KSNNFAKTVTT--TQGLCELVHLQDLYIDRNDF 186
           K N  +  +     + L   + + D     +D+
Sbjct: 315 KYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDY 347

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 4e-04
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 21/131 (16%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAG--LSSLKNLSLAYNR-----------LEGSINIEGM 47
             NLK L++      +SV+  + G  L +L+ L L                    + +  
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 48  NMLESLDLSGNKFNSSILSSLTA---LSSLRKLNLMATGFKGTFDVQEL----DSLSNLE 100
             L+ L +   +  + ++        L  L  +++ + G       + L    D + +L+
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI-SAGVLTDEGARLLLDHVDKIKHLK 310

Query: 101 ELDMSDNEIDN 111
            ++M  N + +
Sbjct: 311 FINMKYNYLSD 321

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 8e-04
 Identities = 28/208 (13%), Positives = 62/208 (29%), Gaps = 33/208 (15%)

Query: 259 LSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGD 318
           +    +           +D    ++     V++  VL  +  L+        ++      
Sbjct: 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP 191

Query: 319 MNSLIYLDLSNNQLTGEIPEHLAMGCF-NLEYLLLSNNSLQG---------QLFSKKNNL 368
             +L  L++ +  L   + E +      NLE L+L                +    K+  
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 369 TKLKRLNLDGNHFIGDIPESLSNC---SSLQGLYISDNDITGSIPTWIGNISFLDAIIMP 425
             LK L +        + E          L+ + IS   +T       G    LD +   
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE-----GARLLLDHVD-- 304

Query: 426 DNHLEGPIPSEFCQLDYLEILDLSKNNI 453
                        ++ +L+ +++  N +
Sbjct: 305 -------------KIKHLKFINMKYNYL 319

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 83/506 (16%), Positives = 159/506 (31%), Gaps = 149/506 (29%)

Query: 26  SSLKNLSLAYNRLEGSINIEGM----------NMLESLDLSGNKFNSSIL-----SSLTA 70
            +L  L     R   ++ I+G+          ++  S  +   K +  I      +  + 
Sbjct: 142 QALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCNSP 195

Query: 71  LSSLRKLNLMATGFKGTFDVQELDSLSNLE-ELDMSDNEIDNLVVPKDY-RGLRKLRFLD 128
            + L  L  +       +     D  SN++  +     E+  L+  K Y   L  L   +
Sbjct: 196 ETVLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--N 252

Query: 129 LSGLRIRD----GSKVL-----HSIGSF-PSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
           +   +  +      K+L       +  F  +  T ++  ++ + T+T  +    L     
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SL----- 306

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSI-EVLLLSNNHFQ- 236
                          L      R   +P   LT N    P   L+ I E +      +  
Sbjct: 307 ---------------LLKYLDCRPQDLPREVLTTN----PR-RLSIIAESIRDGLATWDN 346

Query: 237 ------------IPIS---LEPFF---NYSKLKIFHANNSLSGPFRLPTRSRKNIIALDI 278
                       I  S   LEP      + +L +F  +        +PT        L +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS------AHIPTI------LLSL 394

Query: 279 SYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN-----QLT 333
            +  +     + +   L     +         SIPS        IYL+L         L 
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--------IYLELKVKLENEYALH 446

Query: 334 GEIPEHLAMG-CFNLEYLLLSNNS----------LQGQLFSKKNNLTKLKRLNLDGNHFI 382
             I +H  +   F+ + L+               L+     ++  L ++  L+     F+
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---RFL 503

Query: 383 G----------DIPESLSNCSSLQGL-----YISDNDITGSIPTWIGNI-SFLDAIIMPD 426
                      +   S+ N  +LQ L     YI DND     P +   + + LD +   +
Sbjct: 504 EQKIRHDSTAWNASGSILN--TLQQLKFYKPYICDND-----PKYERLVNAILDFLPKIE 556

Query: 427 NHLEGPIPSEFCQLDYLEILDLSKNN 452
            +L   I S++   D L I  ++++ 
Sbjct: 557 ENL---ICSKYT--DLLRIALMAEDE 577

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 48/319 (15%), Positives = 94/319 (29%), Gaps = 41/319 (12%)

Query: 24  GLSSLKNLSLAYNRLE---GSINIEGMNMLESLDLSGNKFNSSILSSL-TALSS----LR 75
            L   + L   +   E      + E ++ L  L+L+G +      + +   L S    L 
Sbjct: 45  VLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALD 104

Query: 76  KLNLMATGFKGTFDVQEL-DSLSNLEELDMSDNEIDNLVVPKDYRGLR----KLRFLDLS 130
           ++NL +        ++ L        +L +  N +           L     ++  L LS
Sbjct: 105 EVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS 163

Query: 131 GLRIRD-GSKVL-HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELV----HLQDLYIDRN 184
              +   G  VL   +    S+  L L            + L   +     LQ+L +  N
Sbjct: 164 NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL--GDEGLELLAAQLDRNRQLQELNVAYN 221

Query: 185 DF----IGSLPWCLANLTSLRVLHVPDNQLTGN------LSSSPLMHLTSIEVLLLSNNH 234
                   +L        SL +LH+  N+L+                   + V L     
Sbjct: 222 GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281

Query: 235 FQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKV 294
                       Y  + +     +L+   R   +    ++  D+  ++     P    ++
Sbjct: 282 VS---------EYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQL 332

Query: 295 LPNLGFLSITFNAFNGSIP 313
           L   G +         S  
Sbjct: 333 LRVEGEVRALLEQLGSSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 321 SLIYLDLSNNQLTGEIPEHLAMG---CFNLEYLLLSNNSLQ---GQLFSK--KNNLTKLK 372
            +  L LSNN LT      L  G     ++ +L L +  L     +L +     N  +L+
Sbjct: 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQ 214

Query: 373 RLNLDGNHFIGD-----IPESLSNCSSLQGLYISDNDIT 406
            LN+  N   GD     +  +     SL+ L++  N+++
Sbjct: 215 ELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 18/129 (13%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGL-----SSLKNLSLAYNRL--EG----SINIEGMNM 49
               + L L  NS        L  L       +  L L+ N L   G       + G   
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 50  LESLDLSGNKFN----SSILSSLTALSSLRKLNLMATGF--KGTFDVQE-LDSLSNLEEL 102
           +  L L            + + L     L++LN+   G        +        +LE L
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244

Query: 103 DMSDNEIDN 111
            +  NE+ +
Sbjct: 245 HLYFNELSS 253

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 17/88 (19%)

Query: 324 YLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQ---GQLFSKKNNLTKLKRLNL 376
            L L+NNQ+T      L  G F    NL+ L  ++N L      +F K   LT+L +L+L
Sbjct: 37  RLWLNNNQITK-----LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK---LTQLTQLDL 88

Query: 377 DGNHFIGDIPE-SLSNCSSLQGLYISDN 403
           + NH +  IP  +  N  SL  +Y+ +N
Sbjct: 89  NDNH-LKSIPRGAFDNLKSLTHIYLYNN 115

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 17/88 (19%)

Query: 324 YLDLSNNQLTGEIPEHLAMGCF----NLEYLLLSNNSLQ---GQLFSKKNNLTKLKRLNL 376
            L L +NQ+T      L  G F     L  L L NN L      +F K   LT+L +L+L
Sbjct: 34  VLYLYDNQITK-----LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK---LTQLTQLSL 85

Query: 377 DGNHFIGDIPE-SLSNCSSLQGLYISDN 403
           + N  +  IP  +  N  SL  +++ +N
Sbjct: 86  NDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	459
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.0
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.0
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.66
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.78
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.72
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.54
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.8
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	89.78
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	86.66

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6e-50  Score=399.80  Aligned_cols=447  Identities=30%  Similarity=0.427  Sum_probs=354.2

Q ss_pred             CCCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778            1 LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN   78 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   78 (459)
                      +++|++|++++|.+++..+. +..+++|++|++++|.+.+  +..+..+++|++|++++|.+....+..  .+++|++|+
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~  275 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS  275 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred             CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence            57889999999988876665 8889999999999998775  456888999999999999886554443  788899999


Q ss_pred             ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCccccc-ccCCCcccEEEccC
Q 039778           79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS-IGSFPSLKTLYLKS  157 (459)
Q Consensus        79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~  157 (459)
                      +++|.+.+.++......+++|++|++++|.+.... +..+..+++|++|++++|.+.+.  ++.. +..+++|++|++++
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~--ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGE--LPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC-CGGGGGCTTCCEEECCSSEEEEE--CCHHHHTTCTTCCEEECCS
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc-chHHhcCCCccEEECCCCcccCc--CCHHHHhcCCCCCEEeCcC
Confidence            99888876555533333588999999988887543 67788889999999988887632  4544 77888899999988


Q ss_pred             CcccccccccccccCcc-cccEEEccccccccccchhccC--CCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecce
Q 039778          158 NNFAKTVTTTQGLCELV-HLQDLYIDRNDFIGSLPWCLAN--LTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH  234 (459)
Q Consensus       158 ~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (459)
                      |.+.+..+.  .+..++ +|++|++++|.+.+..+..+..  +++|++|++++|.+.+.+ +..+..+++|+.|++++|.
T Consensus       353 n~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~  429 (768)
T 3rgz_A          353 NEFSGELPE--SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELVSLHLSFNY  429 (768)
T ss_dssp             SEEEECCCT--THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC-CGGGGGCTTCCEEECCSSE
T ss_pred             CccCccccH--HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc-CHHHhcCCCCCEEECcCCc
Confidence            887643332  355565 7888888888887766666655  677888888888877544 5667788888888888887


Q ss_pred             eeeecccccccccCCceeeecC-ccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCC
Q 039778          235 FQIPISLEPFFNYSKLKIFHAN-NSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP  313 (459)
Q Consensus       235 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  313 (459)
                      +.+. ....+..+++++.+... +...+.....+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.+..+
T Consensus       430 l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p  507 (768)
T 3rgz_A          430 LSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIP  507 (768)
T ss_dssp             EESC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCC
T ss_pred             ccCc-ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEccCCccCCcCC
Confidence            7632 23446666777777643 3444455556667788888888888888777776654 8888888888888887788


Q ss_pred             CcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccccccc------------------------------
Q 039778          314 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFS------------------------------  363 (459)
Q Consensus       314 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~------------------------------  363 (459)
                      ..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|++.+.+|.                              
T Consensus       508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (768)
T 3rgz_A          508 KWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE  586 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred             hHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence            8888888888888888888877776554 488888888888877654433                              


Q ss_pred             ----------------------------------------ccccccCCceEEccCCcccCCCcccccccCCCcEEEcccc
Q 039778          364 ----------------------------------------KKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDN  403 (459)
Q Consensus       364 ----------------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  403 (459)
                                                              .+..+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN  666 (768)
T ss_dssp             CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence                                                    2344678999999999999999999999999999999999


Q ss_pred             cccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCCC
Q 039778          404 DITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       404 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~  459 (459)
                      .+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|+++|.+|+
T Consensus       667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            99999999999999999999999999999999999999999999999999999995

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.4e-50  Score=399.12  Aligned_cols=446  Identities=30%  Similarity=0.442  Sum_probs=382.8

Q ss_pred             CCCCcEEEccCCcccccchh--hhcCCccccEEEeccccccCCc--c-cccCccCceEEcCCCCCCcccccc---cccCC
Q 039778            1 LSNLKFLDLSHNSFNNSVLS--SLAGLSSLKNLSLAYNRLEGSI--N-IEGMNMLESLDLSGNKFNSSILSS---LTALS   72 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~~~---~~~l~   72 (459)
                      +++|++|++++|.+++..+.  .+..+++|++|++++|.+.+..  . +.++++|++|++++|.++...+..   +.+++
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A           99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            57899999999999887777  8889999999999999876532  2 378899999999999988766665   78899


Q ss_pred             CCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccE
Q 039778           73 SLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKT  152 (459)
Q Consensus        73 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  152 (459)
                      +|++|++++|.+.+..   .+..+++|++|++++|.+.... + .+..+++|++|++++|.+.+.  .+..+..+++|++
T Consensus       179 ~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~-~-~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~  251 (768)
T 3rgz_A          179 ELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGI-P-FLGDCSALQHLDISGNKLSGD--FSRAISTCTELKL  251 (768)
T ss_dssp             TCCEEECCSSEEESCC---BCTTCTTCCEEECCSSCCCSCC-C-BCTTCCSCCEEECCSSCCCSC--HHHHTTTCSSCCE
T ss_pred             CCCEEECCCCcccccC---CcccCCcCCEEECcCCcCCCCC-c-ccccCCCCCEEECcCCcCCCc--ccHHHhcCCCCCE
Confidence            9999999999877433   3478999999999999988753 3 389999999999999998765  7888999999999


Q ss_pred             EEccCCcccccccccccccCcccccEEEccccccccccchhccC-CCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEee
Q 039778          153 LYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLAN-LTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLS  231 (459)
Q Consensus       153 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  231 (459)
                      |++++|.+.+..+.    ..+++|++|++++|.+.+..|..+.. +++|++|++++|.+.+.+ +..+..+++|+.|+++
T Consensus       252 L~Ls~n~l~~~~~~----~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~  326 (768)
T 3rgz_A          252 LNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALS  326 (768)
T ss_dssp             EECCSSCCEESCCC----CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC-CGGGGGCTTCCEEECC
T ss_pred             EECCCCcccCccCc----cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc-chHHhcCCCccEEECC
Confidence            99999988654443    27889999999999998878877766 499999999999987544 5678899999999999


Q ss_pred             cceeeeecccccccccCCceeeecCc-cccCCcccCcCCCC-CccEEEeccCccccccchhhhh-cCCCccEEEeecCcC
Q 039778          232 NNHFQIPISLEPFFNYSKLKIFHANN-SLSGPFRLPTRSRK-NIIALDISYNKLQGHIPVEIGK-VLPNLGFLSITFNAF  308 (459)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~  308 (459)
                      +|.+.+......+..+++++.+.... ...+.....+..++ +|++|++++|.+.+.++..+.. .+++|+.|++++|.+
T Consensus       327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l  406 (768)
T 3rgz_A          327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF  406 (768)
T ss_dssp             SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred             CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence            99988766666677888888887543 33334444555555 8999999999998877776653 267899999999999


Q ss_pred             CCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCccc
Q 039778          309 NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPES  388 (459)
Q Consensus       309 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  388 (459)
                      .+..+..+..+++|+.|++++|.+++.+|..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|.+
T Consensus       407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  485 (768)
T 3rgz_A          407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG  485 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             ccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH
Confidence            98888899999999999999999987777655 45999999999999999889999999999999999999999999999


Q ss_pred             ccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCCC
Q 039778          389 LSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       389 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~  459 (459)
                      +..+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+++|.+|.
T Consensus       486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred             HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999984

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.3e-47  Score=375.14  Aligned_cols=444  Identities=21%  Similarity=0.266  Sum_probs=264.7

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+  +..|.++++|++|++++|.+....+..|+++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            468999999999998888999999999999999998765  456899999999999999998777888999999999999


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCccc--EEEccC
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLK--TLYLKS  157 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~--~L~l~~  157 (459)
                      ++|.+. ..+...+..+++|++|++++|.+.....+... .+++|++|++++|.+...  .+..++.+++|+  +|++++
T Consensus       113 ~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~l~L~l~~  188 (606)
T 3t6q_A          113 IQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYL--SKEDMSSLQQATNLSLNLNG  188 (606)
T ss_dssp             TTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEE--CHHHHHTTTTCCSEEEECTT
T ss_pred             cccCcc-cCCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCccccc--ChhhhhhhcccceeEEecCC
Confidence            999887 44445788899999999999998886544444 489999999999887653  455677778877  778887


Q ss_pred             Cccccccccccc-----------------------------------------------ccCc--ccccEEEcccccccc
Q 039778          158 NNFAKTVTTTQG-----------------------------------------------LCEL--VHLQDLYIDRNDFIG  188 (459)
Q Consensus       158 ~~~~~~~~~~~~-----------------------------------------------~~~~--~~L~~L~l~~~~~~~  188 (459)
                      |.+....+....                                               +..+  ..|+.|++++|.+.+
T Consensus       189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN  268 (606)
T ss_dssp             CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred             CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence            776543322100                                               0001  145666666666666


Q ss_pred             ccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCcc-ccCCc-ccC
Q 039778          189 SLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNS-LSGPF-RLP  266 (459)
Q Consensus       189 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~-~~~  266 (459)
                      ..+..+..+++|++|+++++.+. .+ +..+..+++|+.|++++|.+... ....+..+++++.+..... ..... ...
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~-~l-p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  345 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLS-EL-PSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGC  345 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCS-CC-CSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred             cCHHHhccccCCCEEeccCCccC-CC-ChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhh
Confidence            55555666667777777766655 33 23456666666666666655421 1233444455555443221 11111 112


Q ss_pred             cCCCCCccEEEeccCcccccc--chhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcc
Q 039778          267 TRSRKNIIALDISYNKLQGHI--PVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC  344 (459)
Q Consensus       267 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  344 (459)
                      +..+++|++|++++|.+.+..  +..+ ..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+...+..+
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  424 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL  424 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTT-TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred             hhccCcCCEEECCCCccccccCcchhc-ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence            344555555555555554222  2222 2245555555555555444444444555555555555544433333333344


Q ss_pred             cccceeeccccccccccccccccccCCceEEccCCcccCC---CcccccccCCCcEEEcccccccCCCcccccCcccccE
Q 039778          345 FNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD---IPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDA  421 (459)
Q Consensus       345 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  421 (459)
                      ++|++|++++|.+.+..+..+..+++|++|++++|++.+.   .+..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus       425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  504 (606)
T 3t6q_A          425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH  504 (606)
T ss_dssp             TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence            4555555555544444444444444555555555444331   1123444444444444444444434444444444444


Q ss_pred             EEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778          422 IIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA  454 (459)
Q Consensus       422 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  454 (459)
                      |++++|++.+..|..+..++.| .|++++|+++
T Consensus       505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~  536 (606)
T 3t6q_A          505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS  536 (606)
T ss_dssp             EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred             EECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence            4444444444444444444444 4444444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8e-46  Score=360.32  Aligned_cols=442  Identities=22%  Similarity=0.260  Sum_probs=351.6

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+  ...|.++++|++|++++|.++...+..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            468999999999998888899999999999999998775  446889999999999999998777788999999999999


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcc----cEEEc
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSL----KTLYL  155 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L----~~L~l  155 (459)
                      +++.+. .++...+..+++|++|++++|.+.....|..+..+++|++|+++++.+...  .+..++.+++|    +.+++
T Consensus       108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE--CGGGGHHHHTCTTCCCEEEC
T ss_pred             cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee--cHHHccchhccchhhhhccc
Confidence            999876 444446889999999999999998766688899999999999999988653  44566666677    78888


Q ss_pred             cCCcccccccccccccCcccccEEEcccc---------------------------------------------------
Q 039778          156 KSNNFAKTVTTTQGLCELVHLQDLYIDRN---------------------------------------------------  184 (459)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---------------------------------------------------  184 (459)
                      ++|.+....+.  .+... +|++|+++++                                                   
T Consensus       185 ~~n~l~~~~~~--~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~  261 (570)
T 2z63_A          185 SLNPMNFIQPG--AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE  261 (570)
T ss_dssp             TTCCCCEECTT--TTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred             CCCCceecCHH--HhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence            88877654432  12222 4555555543                                                   


Q ss_pred             -------ccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc
Q 039778          185 -------DFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN  257 (459)
Q Consensus       185 -------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  257 (459)
                             .+.+..+..+..+++|++|+++++.+. .+ +..+..+ +|+.|++++|.+. ....   ..+++++.+....
T Consensus       262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l-~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~  334 (570)
T 2z63_A          262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RV-KDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTS  334 (570)
T ss_dssp             EEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SC-CBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEES
T ss_pred             hhhhcchhhhhhchhhhcCcCcccEEEecCccch-hh-hhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcC
Confidence                   233344556666788889998888776 44 3445566 8889999888776 2222   3445555554322


Q ss_pred             cccCCcccCcCCCCCccEEEeccCcccccc--chhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc
Q 039778          258 SLSGPFRLPTRSRKNIIALDISYNKLQGHI--PVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE  335 (459)
Q Consensus       258 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  335 (459)
                      ..... ......+++|++|++++|.+.+..  +..+. .+++|+.|++++|.+...... +..+++|+.|++++|.+.+.
T Consensus       335 n~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          335 NKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             CBSCC-BCCCCBCTTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred             Ccccc-ccccccCCCCCEEeCcCCccCcccccccccc-ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence            11111 112267899999999999887433  44444 489999999999988754443 88999999999999999855


Q ss_pred             cchhHHhcccccceeeccccccccccccccccccCCceEEccCCccc-CCCcccccccCCCcEEEcccccccCCCccccc
Q 039778          336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFI-GDIPESLSNCSSLQGLYISDNDITGSIPTWIG  414 (459)
Q Consensus       336 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  414 (459)
                      .+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|++|++++|++.+..|..+.
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  491 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  491 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence            55556677999999999999999888889999999999999999987 46788899999999999999999977788999


Q ss_pred             CcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCCC
Q 039778          415 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       415 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~  459 (459)
                      .+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|.
T Consensus       492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            999999999999999977777899999999999999999998873

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.4e-46  Score=362.78  Aligned_cols=440  Identities=20%  Similarity=0.213  Sum_probs=278.7

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+  +..|.++++|++|++++|.++...+..|+++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            578999999999998888899999999999999998776  456889999999999999998777889999999999999


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCccc----EEEc
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLK----TLYL  155 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~----~L~l  155 (459)
                      ++|.+. ..+...+..+++|++|++++|.+....+|..+..+++|++|++++|.+...  .+..++.+++|+    ++++
T Consensus       112 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~~l~~L~l  188 (606)
T 3vq2_A          112 VETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI--TVNDLQFLRENPQVNLSLDM  188 (606)
T ss_dssp             TTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE--CTTTTHHHHHCTTCCCEEEC
T ss_pred             cCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec--Chhhhhhhhccccccceeec
Confidence            999887 455457889999999999999998766688899999999999999887653  233333333322    4555


Q ss_pred             cCCcccccccccc-------------------------------------------------------------------
Q 039778          156 KSNNFAKTVTTTQ-------------------------------------------------------------------  168 (459)
Q Consensus       156 ~~~~~~~~~~~~~-------------------------------------------------------------------  168 (459)
                      ++|.+........                                                                   
T Consensus       189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  268 (606)
T 3vq2_A          189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL  268 (606)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred             cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence            5554433222100                                                                   


Q ss_pred             -----------cccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeee
Q 039778          169 -----------GLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQI  237 (459)
Q Consensus       169 -----------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  237 (459)
                                 .+..+++|+.|++.++.+.. .+ .+..+++|++|++++|.+ +.++  .+ .+++|+.|++++|....
T Consensus       269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp--~~-~l~~L~~L~l~~n~~~~  342 (606)
T 3vq2_A          269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP--TL-DLPFLKSLTLTMNKGSI  342 (606)
T ss_dssp             CCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC--CC-CCSSCCEEEEESCSSCE
T ss_pred             cccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc--cC-CCCccceeeccCCcCcc
Confidence                       02223344444444444322 22 344445555555555554 2332  12 55555555555553222


Q ss_pred             ecccccccccCCceeeecCccc-cCC--cccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCC-
Q 039778          238 PISLEPFFNYSKLKIFHANNSL-SGP--FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP-  313 (459)
Q Consensus       238 ~~~~~~~~~~~~l~~~~~~~~~-~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-  313 (459)
                      ..   .+..+++++.+...... ...  ....+..+++|++|++++|.+. .++..+. .+++|+.|++++|.+....+ 
T Consensus       343 ~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~  417 (606)
T 3vq2_A          343 SF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEF  417 (606)
T ss_dssp             EC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTT
T ss_pred             ch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccCh
Confidence            22   23344444444422211 111  1223344555666666666554 2332222 25666666666666655444 


Q ss_pred             CcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccc-ccccccccccCCceEEccCCcccCCCccccccc
Q 039778          314 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG-QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNC  392 (459)
Q Consensus       314 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  392 (459)
                      ..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+.++..+
T Consensus       418 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  496 (606)
T 3vq2_A          418 SAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL  496 (606)
T ss_dssp             TTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhhhccccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence            4566666666666666666633333 33446667777777666665 245566666777777777776666666666666


Q ss_pred             CCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCC-cccEEeccCCcccccC
Q 039778          393 SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLD-YLEILDLSKNNIAGSL  457 (459)
Q Consensus       393 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~  457 (459)
                      ++|++|++++|++.+..|..+..+++|+.|++++|+++ .+|..+..++ +|+.|++++|++.+.-
T Consensus       497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence            77777777777766555666666677777777777766 5665566665 4777777777766543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.3e-44  Score=352.83  Aligned_cols=449  Identities=21%  Similarity=0.238  Sum_probs=275.8

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+  +..+.++++|++|++++|.++......|+++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            478899999999888888888889999999999888765  345788899999999998887655567888999999999


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccc--cCCCcccEEEccC
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI--GSFPSLKTLYLKS  157 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~  157 (459)
                      ++|.+. .++...+..+++|++|++++|.+.... +..+..+++|++|++++|.+...  .+..+  ..+++|++|++++
T Consensus       105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQAL--KSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCB--CHHHHGGGTTCEESEEECTT
T ss_pred             CCCccC-ccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCccccc--CHHHhhccccccccEEECCC
Confidence            988876 555557888899999999998887754 56677888899998888877653  22222  3557788888888


Q ss_pred             Ccccccccccc-ccc------------------------CcccccEEEccccccccccchhccCCC--CCcEEEcCCCcC
Q 039778          158 NNFAKTVTTTQ-GLC------------------------ELVHLQDLYIDRNDFIGSLPWCLANLT--SLRVLHVPDNQL  210 (459)
Q Consensus       158 ~~~~~~~~~~~-~~~------------------------~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~  210 (459)
                      |.+....+... .+.                        ..++|+.|++++|.+.+..+..+..++  +|++|++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            77654433210 000                        113455555555555555455554443  266666666655


Q ss_pred             cCcCCCCcccCCCcccEEEeecceeeeeccccccccc---------------------------------CCceeeecC-
Q 039778          211 TGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNY---------------------------------SKLKIFHAN-  256 (459)
Q Consensus       211 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---------------------------------~~l~~~~~~-  256 (459)
                      . .+.+..+..+++|+.|++++|.+... ....+..+                                 ++++.+... 
T Consensus       261 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~  338 (680)
T 1ziw_A          261 N-VVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED  338 (680)
T ss_dssp             C-EECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred             C-ccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence            4 22234455566666666666554421 11223333                                 334443321 


Q ss_pred             ccccCCcccCcCCCCCccEEEeccCcccc-ccchhhhh--cCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccc
Q 039778          257 NSLSGPFRLPTRSRKNIIALDISYNKLQG-HIPVEIGK--VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLT  333 (459)
Q Consensus       257 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  333 (459)
                      +...+.....+..+++|++|++++|.+.. .++...+.  ..++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus       339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  418 (680)
T 1ziw_A          339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG  418 (680)
T ss_dssp             CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred             CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence            12222222233444555555555443211 11111110  0134555555555555555566777777777777777776


Q ss_pred             cccchhHHhcccccceeecccccccccc--------------------------ccccccccCCceEEccCCcccCCCcc
Q 039778          334 GEIPEHLAMGCFNLEYLLLSNNSLQGQL--------------------------FSKKNNLTKLKRLNLDGNHFIGDIPE  387 (459)
Q Consensus       334 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~--------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~  387 (459)
                      +.++...+.++++|++|++++|++.+..                          +..+..+++|++|++++|.+.+..+.
T Consensus       419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~  498 (680)
T 1ziw_A          419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD  498 (680)
T ss_dssp             EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence            5566555566777777777777665433                          33445555666666666666555555


Q ss_pred             cccccCCCcEEEcccccccCCCc--------ccccCcccccEEEcCCCcccCCCc-hhhcCCCcccEEeccCCcccccCC
Q 039778          388 SLSNCSSLQGLYISDNDITGSIP--------TWIGNISFLDAIIMPDNHLEGPIP-SEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       388 ~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      ++..+++|++|++++|.+.+..+        ..+..+++|+.|++++|.+. .+| ..+..+++|+.|++++|+++ .+|
T Consensus       499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~-~l~  576 (680)
T 1ziw_A          499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLN-TLP  576 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCC-cCC
Confidence            55666666666666666553211        12455666677777776666 344 34667777777777777776 444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.8e-44  Score=347.75  Aligned_cols=441  Identities=19%  Similarity=0.183  Sum_probs=358.4

Q ss_pred             cEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCC
Q 039778            5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT   82 (459)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   82 (459)
                      +.++.++..++ ..|..+.  +++++|++++|.+.+  +..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus        15 ~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             TEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             ceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            56777777777 4444443  479999999998876  457999999999999999998888899999999999999999


Q ss_pred             cceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccc
Q 039778           83 GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK  162 (459)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  162 (459)
                      .+. ......+..+++|++|++++|.+.... +..+..+++|++|++++|.+...  ....+..+++|++|++++|.+..
T Consensus        92 ~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           92 PLI-FMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSI--KLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             CCS-EECTTTTSSCTTCCEEECTTSCCSCGG-GSCCTTCTTCCEEECCSSCCCCC--CCCTTCCCTTCCEEECCSSCCCE
T ss_pred             ccc-ccChhhhcccccccEeeccccCcccCC-cchhccCCcccEEECCCCccccc--CcccccCCcccCEEEcccCcccc
Confidence            987 455558999999999999999998864 46689999999999999998763  22334459999999999999875


Q ss_pred             cccccccccCccccc--EEEccccccccccchhccCC-------------------------------------------
Q 039778          163 TVTTTQGLCELVHLQ--DLYIDRNDFIGSLPWCLANL-------------------------------------------  197 (459)
Q Consensus       163 ~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~l~~~-------------------------------------------  197 (459)
                      ..+.  .+..+++|+  .|++++|.+.+..+..+...                                           
T Consensus       168 ~~~~--~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~  245 (606)
T 3t6q_A          168 LSKE--DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP  245 (606)
T ss_dssp             ECHH--HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred             cChh--hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccCh
Confidence            4432  467788888  88999988776655444321                                           


Q ss_pred             --------CCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc-cccCCcccCcC
Q 039778          198 --------TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN-SLSGPFRLPTR  268 (459)
Q Consensus       198 --------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~  268 (459)
                              ..|++++++++.+. .+....+..+++|+.|++++|.+..  ....+..+++++.+.... .........+.
T Consensus       246 ~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~  322 (606)
T 3t6q_A          246 AVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISAS  322 (606)
T ss_dssp             GGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred             hHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhh
Confidence                    15777778877776 4556668889999999999998762  223467778888887543 33333345677


Q ss_pred             CCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCC--CCcccCCCCCcEEEccCCccccccchhHHhcccc
Q 039778          269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSI--PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN  346 (459)
Q Consensus       269 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  346 (459)
                      .+++|++|++++|.+.+.++......+++|+.|++++|.+....  +..+..+++|++|++++|.+. .++...+..+++
T Consensus       323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~  401 (606)
T 3t6q_A          323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQ  401 (606)
T ss_dssp             GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTT
T ss_pred             ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCcc
Confidence            88999999999998887777766666999999999999988654  667889999999999999988 454455567999


Q ss_pred             cceeecccccccccccc-ccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCC---CcccccCcccccEE
Q 039778          347 LEYLLLSNNSLQGQLFS-KKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGS---IPTWIGNISFLDAI  422 (459)
Q Consensus       347 L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L  422 (459)
                      |++|++++|++.+..+. .+..+++|++|++++|.+....+..+..+++|++|++++|++.+.   .+..+..+++|+.|
T Consensus       402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L  481 (606)
T 3t6q_A          402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL  481 (606)
T ss_dssp             CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred             CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence            99999999999876544 488899999999999999988888899999999999999998762   33568889999999


Q ss_pred             EcCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778          423 IMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       423 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      ++++|.+.+..|..+..+++|+.|++++|++++..|
T Consensus       482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  517 (606)
T 3t6q_A          482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI  517 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred             ECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence            999999998888999999999999999999998765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-43  Score=350.77  Aligned_cols=446  Identities=22%  Similarity=0.197  Sum_probs=253.4

Q ss_pred             CCCCcEEEccCCcccccchhhhcCCccccEEEeccccccCCc--ccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778            1 LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN   78 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   78 (459)
                      +++|++|++++|.+++..+..|..+++|++|++++|.+....  .|.++++|++|++++|.+....+..|+++++|++|+
T Consensus        48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD  127 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred             CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence            478899999999998888888989999999999998877633  488899999999999988866677888999999999


Q ss_pred             ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccc--cCCCCCcEEecCCCccCCCCccccc-------------
Q 039778           79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY--RGLRKLRFLDLSGLRIRDGSKVLHS-------------  143 (459)
Q Consensus        79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~-------------  143 (459)
                      +++|.+. ......+..+++|++|++++|.+.... +..+  ..+++|++|++++|.+...  .+..             
T Consensus       128 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~  203 (680)
T 1ziw_A          128 LSHNGLS-STKLGTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLKKLELSSNQIKEF--SPGCFHAIGRLFGLFLN  203 (680)
T ss_dssp             CCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEESEEECTTCCCCCB--CTTGGGGSSEECEEECT
T ss_pred             CCCCccc-ccCchhhcccccCCEEEccCCcccccC-HHHhhccccccccEEECCCCccccc--Chhhhhhhhhhhhhhcc
Confidence            9988876 344446778888999999888877653 2222  2457788888877766543  2222             


Q ss_pred             --------------------------------------ccCCC--cccEEEccCCcccccccccccccCcccccEEEccc
Q 039778          144 --------------------------------------IGSFP--SLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDR  183 (459)
Q Consensus       144 --------------------------------------~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  183 (459)
                                                            +..++  +|+.|++++|.+....+.  .+..+++|++|++++
T Consensus       204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~  281 (680)
T 1ziw_A          204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND--SFAWLPQLEYFFLEY  281 (680)
T ss_dssp             TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT--TTTTCTTCCEEECCS
T ss_pred             ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc--cccCcccccEeeCCC
Confidence                                                  22222  255555555544332221  344555666666666


Q ss_pred             cccccccchhccCCCCCcEEEcCCCcCcC--------cCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeec
Q 039778          184 NDFIGSLPWCLANLTSLRVLHVPDNQLTG--------NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHA  255 (459)
Q Consensus       184 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~  255 (459)
                      |.+.+..+..+..+++|++|+++++...+        .+....+..+++|+.|++++|.+.. .....+..+++++.+..
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L  360 (680)
T 1ziw_A          282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSL  360 (680)
T ss_dssp             CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC-CCTTTTTTCTTCCEEEC
T ss_pred             CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC-CChhHhccccCCcEEEC
Confidence            65555545455555555555554432211        0111234556667777776666543 22223444455554442


Q ss_pred             Cc-----------------------------cccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecC
Q 039778          256 NN-----------------------------SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFN  306 (459)
Q Consensus       256 ~~-----------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~  306 (459)
                      ..                             .........+..+++|+.|++++|.+.+.++...+..+++|+.|++++|
T Consensus       361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n  440 (680)
T 1ziw_A          361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN  440 (680)
T ss_dssp             TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred             CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence            11                             1111122344566778888888877766666555555777777777777


Q ss_pred             cCCCCCCCcccCCCCCcEEEccCCccc--cccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCC
Q 039778          307 AFNGSIPSSFGDMNSLIYLDLSNNQLT--GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD  384 (459)
Q Consensus       307 ~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~  384 (459)
                      .+....+..+..+++|+.|++++|.+.  +.+|.. +..+++|++|++++|++++..+..|..+++|++|++++|.+...
T Consensus       441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~  519 (680)
T 1ziw_A          441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL  519 (680)
T ss_dssp             SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred             CcceeChhhhhcCcccccchhccccccccccCCcc-cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence            665444444444444444444444432  112221 22345555555555555444444444455555555555544322


Q ss_pred             Cc--------ccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778          385 IP--------ESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA  454 (459)
Q Consensus       385 ~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  454 (459)
                      .+        ..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|+++
T Consensus       520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence            11        11344444555555555444222223444445555555555444322333344444444444444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.8e-43  Score=342.86  Aligned_cols=434  Identities=19%  Similarity=0.155  Sum_probs=336.2

Q ss_pred             cEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCC
Q 039778            5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT   82 (459)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   82 (459)
                      ++++.++..++.... .+.  +++++|++++|.+.+  ...+.++++|++|++++|.++...+..|.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPD-DIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TEEECTTSCCSSCCT-TSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEccCCCcccCCC-CCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            578888888885443 332  789999999998876  346899999999999999999878889999999999999999


Q ss_pred             cceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccc
Q 039778           83 GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK  162 (459)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  162 (459)
                      .+. ...+..+..+++|++|++++|.+.... +..++.+++|++|++++|.+... .++..++++++|++|++++|.+..
T Consensus        91 ~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           91 PIQ-SFSPGSFSGLTSLENLVAVETKLASLE-SFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCC-CCCTTSSTTCTTCCEEECTTSCCCCSS-SSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             ccc-ccChhhcCCcccCCEEEccCCcccccc-ccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCccee
Confidence            987 455568999999999999999998874 46699999999999999988752 267889999999999999998876


Q ss_pred             cccccccccCcccc----cEEEccccccccccchhcc-------------------------------------------
Q 039778          163 TVTTTQGLCELVHL----QDLYIDRNDFIGSLPWCLA-------------------------------------------  195 (459)
Q Consensus       163 ~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~-------------------------------------------  195 (459)
                      ..+.  .+..+.+|    .++++++|.+....+..+.                                           
T Consensus       168 ~~~~--~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  245 (606)
T 3vq2_A          168 ITVN--DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER  245 (606)
T ss_dssp             ECTT--TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             cChh--hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence            5432  23333333    2555555554433333222                                           


Q ss_pred             -------------------------------------CCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeee
Q 039778          196 -------------------------------------NLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIP  238 (459)
Q Consensus       196 -------------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  238 (459)
                                                           .+++|++++++++.+. .++  .+..+++|+.|++++|.+. .
T Consensus       246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~-~  321 (606)
T 3vq2_A          246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLK-Q  321 (606)
T ss_dssp             CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCS-S
T ss_pred             cccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccCc-c
Confidence                                                 2334444444444432 221  3455566667777666652 2


Q ss_pred             cccccccccCCceeeecCcc-ccCCcccCcCCCCCccEEEeccCcccccc--chhhhhcCCCccEEEeecCcCCCCCCCc
Q 039778          239 ISLEPFFNYSKLKIFHANNS-LSGPFRLPTRSRKNIIALDISYNKLQGHI--PVEIGKVLPNLGFLSITFNAFNGSIPSS  315 (459)
Q Consensus       239 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~  315 (459)
                      ..  .+ .+++++.+..... ...  ......+++|++|++++|.+.+..  +..+. .+++|+.|++++|.+.. .+..
T Consensus       322 lp--~~-~l~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~-~~~~  394 (606)
T 3vq2_A          322 FP--TL-DLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAII-MSAN  394 (606)
T ss_dssp             CC--CC-CCSSCCEEEEESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEEE-ECCC
T ss_pred             cc--cC-CCCccceeeccCCcCcc--chhhccCCCCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCcccc-chhh
Confidence            11  22 5555555553322 111  225567889999999999887442  44444 48999999999998875 3477


Q ss_pred             ccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccC-CCcccccccCC
Q 039778          316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIG-DIPESLSNCSS  394 (459)
Q Consensus       316 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~  394 (459)
                      +..+++|+.|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++
T Consensus       395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence            88999999999999999855554566779999999999999998888889999999999999999987 36788899999


Q ss_pred             CcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778          395 LQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       395 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      |++|++++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|+++ .+|
T Consensus       475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p  537 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSK  537 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEE
T ss_pred             CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccC
Confidence            999999999999888888999999999999999999888999999999999999999998 666

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-42  Score=349.22  Aligned_cols=439  Identities=21%  Similarity=0.225  Sum_probs=253.7

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC---CcccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG---SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN   78 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   78 (459)
                      +++++|++++|.+++..+..|.++++|++|++++|....   +..|.++++|++|++++|.+....+..|.++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            689999999999998889999999999999999995433   55789999999999999999888899999999999999


Q ss_pred             ccCCcceeeecc-ccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCC--CcccEEEc
Q 039778           79 LMATGFKGTFDV-QELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF--PSLKTLYL  155 (459)
Q Consensus        79 l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l  155 (459)
                      +++|.+.+..+. ..+..+++|++|++++|.+....++..+..+++|++|++++|.+...  .+..+..+  ++|+.|++
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~--~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV--CEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC--CSGGGHHHHHCSSCCCEE
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee--CHHHcccccCCccceEEC
Confidence            999988753332 24888999999999999998876667899999999999999987654  33344333  45555555


Q ss_pred             cCCcccccccccccccCc--------------------------------------------------------------
Q 039778          156 KSNNFAKTVTTTQGLCEL--------------------------------------------------------------  173 (459)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~--------------------------------------------------------------  173 (459)
                      ++|.+....+.  .+..+                                                              
T Consensus       182 ~~n~l~~~~~~--~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~  259 (844)
T 3j0a_A          182 AANSLYSRVSV--DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT  259 (844)
T ss_dssp             CCSBSCCCCCC--CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred             CCCcccccccc--chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence            55544332211  11111                                                              


Q ss_pred             ------ccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccccccccc
Q 039778          174 ------VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNY  247 (459)
Q Consensus       174 ------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  247 (459)
                            ++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+.+..+..+++|+.|++++|.+. ......+..+
T Consensus       260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l  337 (844)
T 3j0a_A          260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGL  337 (844)
T ss_dssp             TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSC
T ss_pred             hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCC
Confidence                  33444444444444444444444444444444444443 222333444444555555444432 1112233334


Q ss_pred             CCceeeecCc-cccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEE
Q 039778          248 SKLKIFHANN-SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLD  326 (459)
Q Consensus       248 ~~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  326 (459)
                      ++++.+.... .........+..+++|++|++++|.+. .++.     +++|+.+++++|.+... +.   ...+++.++
T Consensus       338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~-----~~~L~~L~l~~N~l~~l-~~---~~~~l~~L~  407 (844)
T 3j0a_A          338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF-----IPSIPDIFLSGNKLVTL-PK---INLTANLIH  407 (844)
T ss_dssp             TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSS-----CCSCSEEEEESCCCCCC-CC---CCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-cccC-----CCCcchhccCCCCcccc-cc---cccccceee
Confidence            4444443221 111111222334444555555444443 1111     34444444444444321 11   122344444


Q ss_pred             ccCCccccccchhHHhcccccceeecccccccccccc-ccccccCCceEEccCCcccC-----CCcccccccCCCcEEEc
Q 039778          327 LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFS-KKNNLTKLKRLNLDGNHFIG-----DIPESLSNCSSLQGLYI  400 (459)
Q Consensus       327 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l  400 (459)
                      +++|++.+.-.......+++|+.|++++|++.+.... .+..+++|++|++++|.+..     ..+..+..+++|++|++
T Consensus       408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L  487 (844)
T 3j0a_A          408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL  487 (844)
T ss_dssp             CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred             cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence            4444444211112223466666666666666543221 23345566666666665542     22234555566666666


Q ss_pred             ccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778          401 SDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      ++|.+.+..+..+..+++|+.|+|++|.+++..+..+.  ++|+.|++++|++++..|
T Consensus       488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~  543 (844)
T 3j0a_A          488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP  543 (844)
T ss_dssp             CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred             CCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence            66666655555555666666666666666543333332  556666666666655544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-42  Score=336.23  Aligned_cols=447  Identities=21%  Similarity=0.205  Sum_probs=282.4

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+.+  +..+..+++|++|++++|.++...+..++++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            357777777777776666677777777777777776655  234677777777777777776555556777777777777


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN  159 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (459)
                      ++|.+........+..+++|++|++++|.......+..+..+++|++|+++++.+...  .+..+..+++|++|+++++.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY--QSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTTTTCSEEEEEEEECSB
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc--ChhhhhccccCceEecccCc
Confidence            7776652112235666777777777777632222234566777777777777766543  55566667777777777666


Q ss_pred             ccccccccccccCcccccEEEcccccccccc--c-hhccCCCCCcEEEcCCCcCcCcCC---CCcccCCCcccEEEeecc
Q 039778          160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSL--P-WCLANLTSLRVLHVPDNQLTGNLS---SSPLMHLTSIEVLLLSNN  233 (459)
Q Consensus       160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~-~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~  233 (459)
                      .......  .+..+++|++|++++|.+.+..  + .....+++|+.|+++++.+.+...   ...+..+++++.+++++|
T Consensus       184 ~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          184 SAFLLEI--FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             STTHHHH--HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             ccccchh--hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence            5432221  2344667777777777665431  1 112235667777776665542211   122345566777777777


Q ss_pred             eeeeeccc-----ccccccCCceeeecCccccC------CcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEE
Q 039778          234 HFQIPISL-----EPFFNYSKLKIFHANNSLSG------PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLS  302 (459)
Q Consensus       234 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  302 (459)
                      .+.+....     ..+..+.+++.+........      ..........+|++|++++|.+. .+|..++..+++|+.|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~  340 (549)
T 2z81_A          262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD  340 (549)
T ss_dssp             EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEE
T ss_pred             cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEE
Confidence            66532221     11223333333321111000      00001123456788888887776 67777665578888888


Q ss_pred             eecCcCCCCC---CCcccCCCCCcEEEccCCccccccch--hHHhcccccceeeccccccccccccccccccCCceEEcc
Q 039778          303 ITFNAFNGSI---PSSFGDMNSLIYLDLSNNQLTGEIPE--HLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLD  377 (459)
Q Consensus       303 L~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~  377 (459)
                      +++|.+.+..   ...+..+++|+.|++++|.++ .++.  ..+..+++|++|++++|+++ .++..+..+++|++|+++
T Consensus       341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls  418 (549)
T 2z81_A          341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS  418 (549)
T ss_dssp             CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECT
T ss_pred             ccCCccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECC
Confidence            8888776533   233566777888888888776 4432  34556778888888888777 455556666777777777


Q ss_pred             CCcccCCCccc------------------ccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcC
Q 039778          378 GNHFIGDIPES------------------LSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQ  439 (459)
Q Consensus       378 ~~~~~~~~~~~------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  439 (459)
                      +|.+... +..                  ...+++|++|++++|++. .+|. ...+++|+.|+|++|++++..|..+..
T Consensus       419 ~N~l~~l-~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  495 (549)
T 2z81_A          419 STGIRVV-KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDR  495 (549)
T ss_dssp             TSCCSCC-CTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred             CCCcccc-cchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhc
Confidence            7765422 111                  136788999999999888 6665 456889999999999999777777889


Q ss_pred             CCcccEEeccCCcccccCC
Q 039778          440 LDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       440 ~~~L~~L~l~~~~~~~~~p  458 (459)
                      +++|+.|++++|++++..|
T Consensus       496 l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          496 LTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CTTCCEEECCSSCBCCCHH
T ss_pred             CcccCEEEecCCCccCCCc
Confidence            9999999999999988765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-41  Score=328.80  Aligned_cols=435  Identities=22%  Similarity=0.224  Sum_probs=338.6

Q ss_pred             cEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCC
Q 039778            5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT   82 (459)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   82 (459)
                      +.++.++..++.+ |..+  .+++++|++++|.+.+  ...|.++++|++|++++|.++...+..|.++++|++|+++++
T Consensus        10 ~~~~c~~~~l~~i-p~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A           10 ITYQCMELNFYKI-PDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             TEEECCSSCCSSC-CSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             cEEEeCCCCcccc-CCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence            4566776666643 3333  3689999999998876  447899999999999999998777888999999999999999


Q ss_pred             cceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccc
Q 039778           83 GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK  162 (459)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  162 (459)
                      .+. ..+...+..+++|++|++++|.+.... +..++.+++|++|++++|.+... .++..++++++|++|++++|.+..
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           87 PIQ-SLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             CCC-EECTTTTTTCTTCCEEECTTSCCCCST-TCSCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             cCC-ccCHhhhcCccccccccccccccccCC-CccccccccccEEecCCCcccee-cChhhhcccCCCCEEeCcCCccce
Confidence            887 556668999999999999999998874 33588999999999999988752 257889999999999999999876


Q ss_pred             cccccccccCcccc----cEEEccccccccccchhccCCCCCcEEEcCCCcCcC--------------------------
Q 039778          163 TVTTTQGLCELVHL----QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG--------------------------  212 (459)
Q Consensus       163 ~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--------------------------  212 (459)
                      ..+.  .+..+++|    +.+++++|.+....+..+... +|++++++++....                          
T Consensus       164 ~~~~--~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  240 (570)
T 2z63_A          164 IYCT--DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  240 (570)
T ss_dssp             ECGG--GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred             ecHH--HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence            5432  46667777    899999999888777777654 78888887752110                          


Q ss_pred             -------------------------------cCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccC
Q 039778          213 -------------------------------NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSG  261 (459)
Q Consensus       213 -------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  261 (459)
                                                     ...+..+..+++|+.++++++.+..  ....+..+ +++.+........
T Consensus       241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~  317 (570)
T 2z63_A          241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFG  317 (570)
T ss_dssp             SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCS
T ss_pred             hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCccc
Confidence                                           1112334556777788887776652  11223333 5555543322222


Q ss_pred             CcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCC--CCcccCCCCCcEEEccCCccccccchh
Q 039778          262 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSI--PSSFGDMNSLIYLDLSNNQLTGEIPEH  339 (459)
Q Consensus       262 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~  339 (459)
                        ..+...+++|++|+++++...+..+.   ..+++|+.|++++|.+....  +..+..+++|+.|++++|.+. .++..
T Consensus       318 --~l~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~  391 (570)
T 2z63_A          318 --QFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN  391 (570)
T ss_dssp             --SCCBCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE
T ss_pred             --ccCcccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccccc
Confidence              22234677888888888877654444   34788999999988876443  456778889999999999887 45544


Q ss_pred             HHhcccccceeeccccccccccc-cccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc-CCCcccccCcc
Q 039778          340 LAMGCFNLEYLLLSNNSLQGQLF-SKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT-GSIPTWIGNIS  417 (459)
Q Consensus       340 ~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~  417 (459)
                       +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..++
T Consensus       392 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             -EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             -ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence             5568999999999999887654 56788999999999999998888888999999999999999987 46888899999


Q ss_pred             cccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778          418 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       418 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      +|+.|++++|++.+..|..+..+++|+.|++++|++++..|
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence            99999999999998889999999999999999999986544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-41  Score=339.07  Aligned_cols=436  Identities=21%  Similarity=0.226  Sum_probs=334.6

Q ss_pred             CCCCcEEEccCCc-ccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccc--cccCCCCc
Q 039778            1 LSNLKFLDLSHNS-FNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSS--LTALSSLR   75 (459)
Q Consensus         1 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~   75 (459)
                      +++|++|++++|. +....++.|.++++|++|++++|.+.+  +..|.++++|++|++++|.+++..+..  +.++++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            5788999999984 333457888999999999999998765  567889999999999999887655544  88899999


Q ss_pred             EEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCC--CC------------------------------
Q 039778           76 KLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGL--RK------------------------------  123 (459)
Q Consensus        76 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~------------------------------  123 (459)
                      +|++++|.+.+..+...+.++++|++|++++|.+.... +..+..+  ++                              
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  205 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV  205 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-HHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence            99999988874444446888999999999888776543 2222222  22                              


Q ss_pred             CcEEecCCCccCCCCccccc------------------------------------ccC--CCcccEEEccCCccccccc
Q 039778          124 LRFLDLSGLRIRDGSKVLHS------------------------------------IGS--FPSLKTLYLKSNNFAKTVT  165 (459)
Q Consensus       124 L~~L~l~~~~~~~~~~~~~~------------------------------------~~~--~~~L~~L~l~~~~~~~~~~  165 (459)
                      |+.|++++|.+...  .+..                                    +..  .++|+.|++++|.+....+
T Consensus       206 L~~L~Ls~n~l~~~--~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~  283 (844)
T 3j0a_A          206 LEILDVSGNGWTVD--ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS  283 (844)
T ss_dssp             BSEEBCSSCCSSTT--TTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred             eeEEecCCCcCchh--HHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence            66666666644321  1111                                    111  2578888888887765433


Q ss_pred             ccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccccccc
Q 039778          166 TTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFF  245 (459)
Q Consensus       166 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  245 (459)
                      .  .+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+. .+.+..+..+++|+.|++++|.+. ......+.
T Consensus       284 ~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~  359 (844)
T 3j0a_A          284 R--VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFK  359 (844)
T ss_dssp             C--CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSC
T ss_pred             h--hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCC-ccChhhhc
Confidence            3  5778999999999999999888888999999999999999987 455677899999999999999875 33344567


Q ss_pred             ccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCC-CcccCCCCCcE
Q 039778          246 NYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIP-SSFGDMNSLIY  324 (459)
Q Consensus       246 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~  324 (459)
                      .+++|+.+........    ....+++|+.|++++|.+. .+|..    ..+++.+++++|.+..... ..+..+++|+.
T Consensus       360 ~l~~L~~L~Ls~N~l~----~i~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~  430 (844)
T 3j0a_A          360 FLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQI  430 (844)
T ss_dssp             SCCCCCEEEEETCCSC----CCSSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCE
T ss_pred             CCCCCCEEECCCCCCC----cccCCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccce
Confidence            7788888874332221    1233789999999999988 55543    5679999999999986432 23568899999


Q ss_pred             EEccCCccccccchhHHhcccccceeecccccccc-----ccccccccccCCceEEccCCcccCCCcccccccCCCcEEE
Q 039778          325 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG-----QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLY  399 (459)
Q Consensus       325 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  399 (459)
                      |++++|++++..+...+..+++|+.|++++|.+..     ..+..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus       431 L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  510 (844)
T 3j0a_A          431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS  510 (844)
T ss_dssp             EEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEE
T ss_pred             eeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeE
Confidence            99999999844344444558999999999999863     3445678899999999999999988888899999999999


Q ss_pred             cccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccC
Q 039778          400 ISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSL  457 (459)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  457 (459)
                      +++|.+.+..+..+.  ++|+.|+|++|.+++..|..+   .+|+.|++++|++.+.-
T Consensus       511 Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          511 LNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICEC  563 (844)
T ss_dssp             EESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred             CCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccc
Confidence            999999965555554  899999999999998777654   57899999999998743

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.3e-42  Score=336.23  Aligned_cols=434  Identities=17%  Similarity=0.183  Sum_probs=273.8

Q ss_pred             CCcEEEccCCcccccchhhhcCCccccEEEeccccccC-Ccccc-----------cCccCceEEcCCCCCCcccccccc-
Q 039778            3 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIE-----------GMNMLESLDLSGNKFNSSILSSLT-   69 (459)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~-----------~l~~L~~L~l~~~~~~~~~~~~~~-   69 (459)
                      +++.|+|+++.+++..+..+..+++|++|++++|.+.. ...+.           .+.+|+ ++++.+.+....+..+. 
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGSCH
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhHHH
Confidence            57889999998888888888899999999998886421 00000           012232 33333222222221111 


Q ss_pred             ------------------cCCCCcEEEcc--CCcceeeeccccccCCCCCcEEECcccccCCc----------------c
Q 039778           70 ------------------ALSSLRKLNLM--ATGFKGTFDVQELDSLSNLEELDMSDNEIDNL----------------V  113 (459)
Q Consensus        70 ------------------~l~~L~~L~l~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------~  113 (459)
                                        ....++.+.+.  .+.+.+ ++. .+.++++|++|++++|.+...                .
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence                              01112222222  234443 433 566666667776666666551                0


Q ss_pred             Cccccc--CCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc-ccc-cccccccccC------cccccEEEccc
Q 039778          114 VPKDYR--GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN-FAK-TVTTTQGLCE------LVHLQDLYIDR  183 (459)
Q Consensus       114 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~------~~~L~~L~l~~  183 (459)
                      +|..+.  .+++|++|++++|.+...  +|..++++++|+.|++++|. +.. ..+.  .+..      +++|++|++++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~--~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLINVACNRGISGEQLKD--DWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEECTTCTTSCHHHHHH--HHHHHHHSGGGGTCCEEECCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEECcCCCCCccccchH--HHHhhhccccCCCCCEEECCC
Confidence            255555  677777777776665543  66666677777777777766 443 1111  2222      36677777777


Q ss_pred             cccccccch--hccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCC-ceeeecCcccc
Q 039778          184 NDFIGSLPW--CLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSK-LKIFHANNSLS  260 (459)
Q Consensus       184 ~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~  260 (459)
                      |.+. .+|.  .+..+++|++|++++|.+.+.++  .+..+++|+.|++++|.+.  .....+..+++ ++.+.......
T Consensus       315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCC
T ss_pred             CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcC
Confidence            7666 4555  66666777777777776665554  5666667777777776665  11223444555 55555322222


Q ss_pred             CCcccCcCC--CCCccEEEeccCccccccchhhhh------cCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCcc
Q 039778          261 GPFRLPTRS--RKNIIALDISYNKLQGHIPVEIGK------VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL  332 (459)
Q Consensus       261 ~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~------~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  332 (459)
                      ..++..+..  +++|++|++++|.+.+..|..+..      .+++|+.|++++|.+.......+..+++|+.|++++|.+
T Consensus       390 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l  469 (636)
T 4eco_A          390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML  469 (636)
T ss_dssp             SSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred             cccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence            122323333  347888888888887666654430      256788888888888755444566678888888888888


Q ss_pred             ccccchhHHhccc-------ccceeeccccccccccccccc--cccCCceEEccCCcccCCCcccccccCCCcEEEc---
Q 039778          333 TGEIPEHLAMGCF-------NLEYLLLSNNSLQGQLFSKKN--NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYI---  400 (459)
Q Consensus       333 ~~~~~~~~~~~~~-------~L~~L~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l---  400 (459)
                      + .++...+...+       +|++|++++|.++ .++..+.  .+++|++|++++|.+.+ +|..+..+++|++|++   
T Consensus       470 ~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          470 T-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             S-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred             C-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence            7 77766554332       8888888888887 4555555  78888888888888876 6777778888888888   


Q ss_pred             ---ccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778          401 ---SDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA  454 (459)
Q Consensus       401 ---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  454 (459)
                         ++|.+.+.+|..+..+++|+.|+|++|.+. .+|..+.  ++|+.|++++|++.
T Consensus       547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred             cccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence               456677778888888888888888888884 7777654  78888888888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.1e-41  Score=321.76  Aligned_cols=431  Identities=21%  Similarity=0.229  Sum_probs=306.3

Q ss_pred             cEEEccCCcccccchhhhcCCccccEEEeccccccCC--cccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCC
Q 039778            5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGS--INIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT   82 (459)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   82 (459)
                      ++|+++++.++. .+..+.  ++|++|++++|.+.+.  ..+..+++|++|++++|+++...+..|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            578888888874 344343  7888888888887763  35788888888888888888777778888888888888888


Q ss_pred             cceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcc--cEEEccCCcc
Q 039778           83 GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSL--KTLYLKSNNF  160 (459)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~  160 (459)
                      .+. .++..   .+++|++|++++|.+.....|..++.+++|++|++++|.+..     ..+..+++|  +.|++++|.+
T Consensus        80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEECTT
T ss_pred             cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEeecccc
Confidence            776 45442   688888888888888776556788888888888888887754     245566666  8888888776


Q ss_pred             --cccccc------------------------cccccCcccccEEEccccc-------cccccchhccCCCCCcEEEcCC
Q 039778          161 --AKTVTT------------------------TQGLCELVHLQDLYIDRND-------FIGSLPWCLANLTSLRVLHVPD  207 (459)
Q Consensus       161 --~~~~~~------------------------~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~  207 (459)
                        ....+.                        ...+..+++|+.+++++|.       +.+..+ .+..+++|+.|++++
T Consensus       151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN  229 (520)
T ss_dssp             TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred             cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence              222111                        0112345566666666654       333333 455566667776666


Q ss_pred             CcCcCcCCCCc--ccCCCcccEEEeecceeeeecccccc----cccCCceeeecCccccCCcc-cCcCC---CCCccEEE
Q 039778          208 NQLTGNLSSSP--LMHLTSIEVLLLSNNHFQIPISLEPF----FNYSKLKIFHANNSLSGPFR-LPTRS---RKNIIALD  277 (459)
Q Consensus       208 ~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~-~~~~~---~~~L~~L~  277 (459)
                      +.+.+......  ....++|+.|++++|.+.+......+    ..++.++.+....... ..+ ..+..   ..+|+.|+
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence            55442111000  01134777777777766533332221    4455555554322111 111 01111   14688899


Q ss_pred             eccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccch--hHHhcccccceeecccc
Q 039778          278 ISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPE--HLAMGCFNLEYLLLSNN  355 (459)
Q Consensus       278 l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~  355 (459)
                      ++++.+.. .+.  ...+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .++.  ..+..+++|++|++++|
T Consensus       309 l~~n~l~~-~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          309 VSGTRMVH-MLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             EESSCCCC-CCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEECCSS
T ss_pred             cCCCcccc-ccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEECCCC
Confidence            98887763 221  134899999999999999878888999999999999999998 4332  34556999999999999


Q ss_pred             ccccccc-cccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCc
Q 039778          356 SLQGQLF-SKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIP  434 (459)
Q Consensus       356 ~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  434 (459)
                      .+.+..+ ..+..+++|++|++++|.+.+..+..+.  ++|++|++++|.+. .+|..+..+++|+.|++++|++. .+|
T Consensus       385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~  460 (520)
T 2z7x_B          385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP  460 (520)
T ss_dssp             CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCC
T ss_pred             cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccC
Confidence            9987444 4578889999999999999877766654  79999999999999 88888889999999999999999 677


Q ss_pred             hh-hcCCCcccEEeccCCcccccC
Q 039778          435 SE-FCQLDYLEILDLSKNNIAGSL  457 (459)
Q Consensus       435 ~~-~~~~~~L~~L~l~~~~~~~~~  457 (459)
                      .. +..+++|+.|++++|++++..
T Consensus       461 ~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          461 DGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             HHHhccCCcccEEECcCCCCcccC
Confidence            65 889999999999999998753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.6e-40  Score=329.16  Aligned_cols=414  Identities=19%  Similarity=0.233  Sum_probs=215.6

Q ss_pred             CCcEEEccCCcccccchhhhcCCccccEEEe-ccccccCCcccc------------------------------------
Q 039778            3 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSL-AYNRLEGSINIE------------------------------------   45 (459)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~------------------------------------   45 (459)
                      +++.|+|+++.+.+..+..+..+++|++|++ ++|.+.+...+.                                    
T Consensus       324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l  403 (876)
T 4ecn_A          324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL  403 (876)
T ss_dssp             CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence            6889999999999999999999999999999 666432220000                                    


Q ss_pred             -----------------cCccCceEEcCC--CCCCcccccccccCCCCcEEEccCCcceee-----------------ec
Q 039778           46 -----------------GMNMLESLDLSG--NKFNSSILSSLTALSSLRKLNLMATGFKGT-----------------FD   89 (459)
Q Consensus        46 -----------------~l~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~   89 (459)
                                       ....++.+.+..  |.++. .|..+.++++|++|++++|.+.+.                 ++
T Consensus       404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                             011122222222  23332 444455555555555555554431                 22


Q ss_pred             ccccc--CCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCc-cCCCCccccccc-------CCCcccEEEccCCc
Q 039778           90 VQELD--SLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR-IRDGSKVLHSIG-------SFPSLKTLYLKSNN  159 (459)
Q Consensus        90 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-------~~~~L~~L~l~~~~  159 (459)
                      . .+.  .+++|++|++++|.+.... |..+..+++|+.|++++|. +.. ..+|..++       .+++|+.|++++|.
T Consensus       483 ~-~l~f~~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~~lsg-~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          483 E-ELSWSNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISA-AQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             S-CCCGGGCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCTTSCH-HHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             h-hhhhccCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCCCccc-ccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            2 333  5555555555555443322 4455555555555555554 322 00332222       22355555555555


Q ss_pred             ccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCc-ccEEEeecceeeee
Q 039778          160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTS-IEVLLLSNNHFQIP  238 (459)
Q Consensus       160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~  238 (459)
                      +...+. ...+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .+ +..+..+++ |+.|++++|.+.. 
T Consensus       560 L~~ip~-~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~l-p~~l~~l~~~L~~L~Ls~N~L~~-  633 (876)
T 4ecn_A          560 LEEFPA-SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EI-PEDFCAFTDQVEGLGFSHNKLKY-  633 (876)
T ss_dssp             CCBCCC-HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CC-CTTSCEECTTCCEEECCSSCCCS-
T ss_pred             CCccCC-hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cc-hHHHhhccccCCEEECcCCCCCc-
Confidence            542211 012445555555555555554 333 4455555555555555544 33 223444454 5555555554431 


Q ss_pred             cccccccccC--CceeeecCc-cccCCc-----ccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCC
Q 039778          239 ISLEPFFNYS--KLKIFHANN-SLSGPF-----RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG  310 (459)
Q Consensus       239 ~~~~~~~~~~--~l~~~~~~~-~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  310 (459)
                      .. ..+....  +|+.+.... ...+..     ......+++|+.|++++|.+. .+|..++..+++|+.|++++|.+..
T Consensus       634 lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~  711 (876)
T 4ecn_A          634 IP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS  711 (876)
T ss_dssp             CC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC
T ss_pred             Cc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc
Confidence            10 1111111  122221100 000000     001112346677777777666 5666665556677777777776663


Q ss_pred             CCCCcccC-------CCCCcEEEccCCccccccchhHH-hcccccceeeccccccccccccccccccCCceEEccC----
Q 039778          311 SIPSSFGD-------MNSLIYLDLSNNQLTGEIPEHLA-MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG----  378 (459)
Q Consensus       311 ~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~----  378 (459)
                      .....+..       +++|+.|++++|+++ .+|..++ ..+++|+.|++++|++.+ ++..+..+++|+.|++++    
T Consensus       712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l  789 (876)
T 4ecn_A          712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA  789 (876)
T ss_dssp             CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred             cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence            32222222       226777777777666 5665554 346677777777776665 455566667777777654    


Q ss_pred             --CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCC
Q 039778          379 --NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPI  433 (459)
Q Consensus       379 --~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  433 (459)
                        |.+.+..|.++..+++|++|++++|++ +.+|..+.  ++|+.|+|++|++....
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence              555556666666666777777777766 35665544  46677777777665333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1e-38  Score=308.66  Aligned_cols=446  Identities=18%  Similarity=0.179  Sum_probs=333.5

Q ss_pred             CCCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778            1 LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN   78 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   78 (459)
                      |+...+.+.+++.++.... .+  .++|++|++++|.+.+  +..+.++++|++|++++|+++...+..|.++++|++|+
T Consensus         4 C~~~~~c~~~~~~l~~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCceEECCCCccccccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            4555667888888875444 33  2799999999998876  45789999999999999999977788999999999999


Q ss_pred             ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCccc-ccccCCCcccEEEccC
Q 039778           79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL-HSIGSFPSLKTLYLKS  157 (459)
Q Consensus        79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~  157 (459)
                      +++|.+. ..+...+..+++|++|++++|.+.....+..+..+++|++|++++|.....  ++ ..+..+++|++|++++
T Consensus        81 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           81 LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE--IRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             CTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--ECTTTTTTCCEEEEEEEEE
T ss_pred             CCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc--cCHhhhhcccccCeeeccC
Confidence            9999887 555557899999999999999998765577899999999999999874332  43 5788999999999999


Q ss_pred             CcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcC--CCCcccCCCcccEEEeeccee
Q 039778          158 NNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNL--SSSPLMHLTSIEVLLLSNNHF  235 (459)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~  235 (459)
                      |.+....+.  .+..+++|++|+++++.........+..+++|++|+++++.+.+..  +......+++|+.++++++.+
T Consensus       158 n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  235 (549)
T 2z81_A          158 LSLRNYQSQ--SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL  235 (549)
T ss_dssp             TTCCEECTT--TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred             CcccccChh--hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence            998764433  5778899999999999876544444457899999999999887421  223345678999999999987


Q ss_pred             eeeccc---ccccccCCceeeecCcccc-C------CcccCcCCCCCccEEEeccCcccccc----chhhhhcCCCccEE
Q 039778          236 QIPISL---EPFFNYSKLKIFHANNSLS-G------PFRLPTRSRKNIIALDISYNKLQGHI----PVEIGKVLPNLGFL  301 (459)
Q Consensus       236 ~~~~~~---~~~~~~~~l~~~~~~~~~~-~------~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L  301 (459)
                      ......   ..+..+..++.+...+... +      ........+.+++.+.+.++.+....    ........++|+.+
T Consensus       236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L  315 (549)
T 2z81_A          236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI  315 (549)
T ss_dssp             EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred             chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence            643221   1223344455444221111 1      11123456788999999888665211    01122336899999


Q ss_pred             EeecCcCCCCCCCcccCCCCCcEEEccCCccccccchh--HHhcccccceeeccccccccccc--cccccccCCceEEcc
Q 039778          302 SITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEH--LAMGCFNLEYLLLSNNSLQGQLF--SKKNNLTKLKRLNLD  377 (459)
Q Consensus       302 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~l~  377 (459)
                      ++++|.+.......+..+++|++|++++|.+.+.++..  .+..+++|++|++++|++++...  ..+..+++|++|+++
T Consensus       316 ~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls  395 (549)
T 2z81_A          316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS  395 (549)
T ss_dssp             EEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred             EeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence            99999987433333467899999999999998666533  24568999999999999986432  457889999999999


Q ss_pred             CCcccCCCcccccccCCCcEEEcccccccCCCcccc------------------cCcccccEEEcCCCcccCCCchhhcC
Q 039778          378 GNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWI------------------GNISFLDAIIMPDNHLEGPIPSEFCQ  439 (459)
Q Consensus       378 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------~~~~~L~~L~l~~~~~~~~~~~~~~~  439 (459)
                      +|++. .+|..+..+++|++|++++|.+. .++..+                  ..+++|+.|+|++|++. .+|. ...
T Consensus       396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~  471 (549)
T 2z81_A          396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASL  471 (549)
T ss_dssp             TCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGG
T ss_pred             CCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-ccc
Confidence            99988 56777888889999999999876 333322                  25677888888888777 6665 456


Q ss_pred             CCcccEEeccCCcccccCC
Q 039778          440 LDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       440 ~~~L~~L~l~~~~~~~~~p  458 (459)
                      +++|+.|++++|++++..|
T Consensus       472 l~~L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          472 FPVLLVMKISRNQLKSVPD  490 (549)
T ss_dssp             CTTCCEEECCSSCCCCCCT
T ss_pred             CccCCEEecCCCccCCcCH
Confidence            7888888888888886554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.5e-39  Score=314.87  Aligned_cols=381  Identities=19%  Similarity=0.226  Sum_probs=302.2

Q ss_pred             CcccccCccCceEEcCCCCCCcc-----------------cccccc--cCCCCcEEEccCCcceeeeccccccCCCCCcE
Q 039778           41 SINIEGMNMLESLDLSGNKFNSS-----------------ILSSLT--ALSSLRKLNLMATGFKGTFDVQELDSLSNLEE  101 (459)
Q Consensus        41 ~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  101 (459)
                      +..+.++++|++|++++|.++..                 .+..+.  ++++|++|++++|.+.+.++ ..+.++++|++
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~  277 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQL  277 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCE
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCE
Confidence            44588899999999999999864                 888888  99999999999998876665 47889999999


Q ss_pred             EECcccc-cCCccCcccccCC------CCCcEEecCCCccCCCCcccc--cccCCCcccEEEccCCcccccccccccccC
Q 039778          102 LDMSDNE-IDNLVVPKDYRGL------RKLRFLDLSGLRIRDGSKVLH--SIGSFPSLKTLYLKSNNFAKTVTTTQGLCE  172 (459)
Q Consensus       102 L~l~~~~-~~~~~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  172 (459)
                      |++++|. +....+|..+..+      ++|++|++++|.+..   ++.  .++.+++|+.|++++|.+.+..+   .+..
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~---ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~  351 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYNQLEGKLP---AFGS  351 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS---CCCHHHHTTCTTCCEEECCSCCCEEECC---CCEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc---cCchhhhccCCCCCEEeCcCCcCccchh---hhCC
Confidence            9999998 7651226666665      999999999999874   777  89999999999999999873333   4778


Q ss_pred             cccccEEEccccccccccchhccCCCC-CcEEEcCCCcCcCcCCCCcccC--CCcccEEEeecceeeeecccccccccCC
Q 039778          173 LVHLQDLYIDRNDFIGSLPWCLANLTS-LRVLHVPDNQLTGNLSSSPLMH--LTSIEVLLLSNNHFQIPISLEPFFNYSK  249 (459)
Q Consensus       173 ~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~  249 (459)
                      +++|++|++++|.+. .+|..+..+++ |++|++++|.+. .++ ..+..  +++|+.|++++|.+.+.... .+..   
T Consensus       352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~---  424 (636)
T 4eco_A          352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVMSAIDFSYNEIGSVDGK-NFDP---  424 (636)
T ss_dssp             EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCC-SCCCTTCSSCEEEEECCSSCTTTTTTC-SSCT---
T ss_pred             CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccc-hhhhhcccCccCEEECcCCcCCCcchh-hhcc---
Confidence            899999999999988 67777888888 999999999987 554 34444  34899999999876532211 0100   


Q ss_pred             ceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCC-------CC
Q 039778          250 LKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMN-------SL  322 (459)
Q Consensus       250 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-------~L  322 (459)
                                   .......+++|++|++++|.+. .+|..++..+++|+.|++++|.+.......+....       +|
T Consensus       425 -------------~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L  490 (636)
T 4eco_A          425 -------------LDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL  490 (636)
T ss_dssp             -------------TCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGC
T ss_pred             -------------cccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCc
Confidence                         0011114568999999999998 78888887799999999999999854444444333       99


Q ss_pred             cEEEccCCccccccchhHH-hcccccceeeccccccccccccccccccCCceEEc------cCCcccCCCcccccccCCC
Q 039778          323 IYLDLSNNQLTGEIPEHLA-MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNL------DGNHFIGDIPESLSNCSSL  395 (459)
Q Consensus       323 ~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L  395 (459)
                      +.|++++|.++ .+|..++ ..+++|++|++++|++.+ ++..+..+++|++|++      ++|.+.+..|..+..+++|
T Consensus       491 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L  568 (636)
T 4eco_A          491 TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL  568 (636)
T ss_dssp             CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence            99999999998 8887776 469999999999999997 7888889999999999      5677788889999999999


Q ss_pred             cEEEcccccccCCCcccccCcccccEEEcCCCcccCCC-----chhhcC---CCcccEEeccCCccc
Q 039778          396 QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPI-----PSEFCQ---LDYLEILDLSKNNIA  454 (459)
Q Consensus       396 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~---~~~L~~L~l~~~~~~  454 (459)
                      ++|++++|++. .+|..+.  ++|+.|+|++|++....     |.....   +...+..++++|+..
T Consensus       569 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L  632 (636)
T 4eco_A          569 TQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL  632 (636)
T ss_dssp             CEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred             CEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCccc
Confidence            99999999994 8887765  89999999999876422     222222   233355677777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.2e-38  Score=311.21  Aligned_cols=445  Identities=22%  Similarity=0.219  Sum_probs=296.1

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      +++++|||++|.++...+.+|.++++|++|++++|.+..  +.+|.++++|++|+|++|+++...+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            378999999999998888999999999999999998876  456899999999999999998777778999999999999


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCc----ccEEEc
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPS----LKTLYL  155 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----L~~L~l  155 (459)
                      ++|.+. .++...+..+++|++|++++|.+.....+..+..+++|++|++++|.+...  .+..+..+.+    ...+++
T Consensus       132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~l~~~~~~~~l  208 (635)
T 4g8a_A          132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDL  208 (635)
T ss_dssp             TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE--CGGGGHHHHTCTTCCCEEEC
T ss_pred             CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc--ccccccchhhhhhhhhhhhc
Confidence            999887 566667899999999999999998877788899999999999999987653  2233322222    223444


Q ss_pred             cCCccccccccc----------------------ccccCcccccEEEc------------------------------cc
Q 039778          156 KSNNFAKTVTTT----------------------QGLCELVHLQDLYI------------------------------DR  183 (459)
Q Consensus       156 ~~~~~~~~~~~~----------------------~~~~~~~~L~~L~l------------------------------~~  183 (459)
                      +.+.+.......                      ..+..+..++...+                              ..
T Consensus       209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~  288 (635)
T 4g8a_A          209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  288 (635)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred             ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence            444332211110                      00111122222111                              11


Q ss_pred             cccc---cccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccccccc---------------
Q 039778          184 NDFI---GSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFF---------------  245 (459)
Q Consensus       184 ~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---------------  245 (459)
                      +...   ......+.....++.+.+.++.+..   ...+.....++.+++.++.+.... ...+.               
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~  364 (635)
T 4g8a_A          289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGNA  364 (635)
T ss_dssp             ECCCSCEEECTTTTGGGTTCSEEEEESCEEEE---CGGGGSCCCCSEEEEESCEESSCC-CCBCTTCCEEEEESCCSCCB
T ss_pred             hhhcccccchhhhhhhhccccccccccccccc---ccccccchhhhhhhcccccccCcC-cccchhhhhcccccccCCCC
Confidence            0000   0001112223455555555554331   122344455666666665543211 11111               


Q ss_pred             ----ccCCceeeecCc-cc--cCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCC-CCCccc
Q 039778          246 ----NYSKLKIFHANN-SL--SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGS-IPSSFG  317 (459)
Q Consensus       246 ----~~~~l~~~~~~~-~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~  317 (459)
                          .+++++.+.... ..  ............+|+.+++..+.... .+..+ ..+++|+.+++..+..... ....+.
T Consensus       365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~  442 (635)
T 4g8a_A          365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFL  442 (635)
T ss_dssp             CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCC-TTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred             cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccc-cccccccchhhhhccccccccccccc
Confidence                122222222110 00  00111111223344444444443331 11221 1256667777666554433 234567


Q ss_pred             CCCCCcEEEccCCccccccchhHHhcccccceeecccccccc-ccccccccccCCceEEccCCcccCCCcccccccCCCc
Q 039778          318 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG-QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ  396 (459)
Q Consensus       318 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  396 (459)
                      .+++++.++++.|.+. ......+..+++++.|++++|.+.. ..+..|..+++|++|++++|.+.+..|.+|..+++|+
T Consensus       443 ~l~~l~~l~ls~n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~  521 (635)
T 4g8a_A          443 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  521 (635)
T ss_dssp             TCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cccccccccccccccc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence            7888889999988887 5555566678899999999987543 4667788899999999999999988888899999999


Q ss_pred             EEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCC-CcccEEeccCCccccc
Q 039778          397 GLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQL-DYLEILDLSKNNIAGS  456 (459)
Q Consensus       397 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~  456 (459)
                      +|++++|.+.+..+..+..+++|+.|+|++|++++..|+.+..+ ++|+.|+|++|++.+.
T Consensus       522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            99999999997777788899999999999999998888888887 6899999999999863

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.8e-38  Score=306.95  Aligned_cols=436  Identities=23%  Similarity=0.234  Sum_probs=312.7

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccCC--cccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGS--INIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      ...++++++++.++.+. ..+.  ++|++|++++|.+.+.  ..+.++++|++|++++|.++...+..|.++++|++|++
T Consensus        31 ~~~~~l~ls~~~L~~ip-~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVP-KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             --CCEEECTTSCCCSCC-TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCCCccCC-CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            34578999999998644 3332  7999999999988764  47899999999999999998777888999999999999


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcc--cEEEccC
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSL--KTLYLKS  157 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~  157 (459)
                      ++|.+. .++..   .+++|++|++++|.+.....+..+..+++|++|+++++.+...     .+..+++|  +.|++++
T Consensus       108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEE
T ss_pred             CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeec
Confidence            999887 56543   7899999999999998876667899999999999999888652     34444555  9999998


Q ss_pred             Ccc--ccccccc------------------------ccccCcccccEEEcccccc----ccccchhccCCCCCcEEEcCC
Q 039778          158 NNF--AKTVTTT------------------------QGLCELVHLQDLYIDRNDF----IGSLPWCLANLTSLRVLHVPD  207 (459)
Q Consensus       158 ~~~--~~~~~~~------------------------~~~~~~~~L~~L~l~~~~~----~~~~~~~l~~~~~L~~L~l~~  207 (459)
                      |.+  ....+..                        ..+..+++|+.+++++|..    .......+..++.|+.+++.+
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            877  3322210                        0122345566666655421    001112344555666666655


Q ss_pred             CcCcCcCCC--CcccCCCcccEEEeecceeeeecccccc----cccCCceeeecCccccCCcccCc---CCCCCccEEEe
Q 039778          208 NQLTGNLSS--SPLMHLTSIEVLLLSNNHFQIPISLEPF----FNYSKLKIFHANNSLSGPFRLPT---RSRKNIIALDI  278 (459)
Q Consensus       208 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~---~~~~~L~~L~l  278 (459)
                      +.+.+....  ......++|+.|++++|.+.+......+    ..++.++................   ....+|++|++
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence            443321000  0011234788888888876643333221    34444444432211110000000   01256999999


Q ss_pred             ccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccch--hHHhcccccceeeccccc
Q 039778          279 SYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPE--HLAMGCFNLEYLLLSNNS  356 (459)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~  356 (459)
                      +++.+.. .+  ....+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .++.  ..+..+++|++|++++|.
T Consensus       339 ~~n~~~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          339 SDTPFIH-MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             ESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             cCCCccc-cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCc
Confidence            9998753 22  1134899999999999999888888999999999999999998 4443  335579999999999999


Q ss_pred             cccc-cccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCch
Q 039778          357 LQGQ-LFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS  435 (459)
Q Consensus       357 i~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  435 (459)
                      +.+. ....+..+++|++|++++|.+.+..+..+.  ++|++|++++|.+. .+|..+..+++|+.|++++|+++ .+|.
T Consensus       415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~  490 (562)
T 3a79_B          415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD  490 (562)
T ss_dssp             CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCT
T ss_pred             CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCH
Confidence            9873 444578899999999999999876665554  69999999999998 78877779999999999999999 6776


Q ss_pred             h-hcCCCcccEEeccCCcccccC
Q 039778          436 E-FCQLDYLEILDLSKNNIAGSL  457 (459)
Q Consensus       436 ~-~~~~~~L~~L~l~~~~~~~~~  457 (459)
                      . +..+++|+.|++++|++.|..
T Consensus       491 ~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          491 GVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             TSTTTCTTCCCEECCSCCBCCCH
T ss_pred             HHHhcCCCCCEEEecCCCcCCCc
Confidence            6 889999999999999998864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.6e-39  Score=307.21  Aligned_cols=413  Identities=20%  Similarity=0.222  Sum_probs=316.6

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+.+  +..+.++++|++|++++|+++ ..+..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            579999999999998888999999999999999998876  457899999999999999997 44444  8999999999


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCC--cEEecCCCccCCCCccccc--------------
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKL--RFLDLSGLRIRDGSKVLHS--------------  143 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~~~~~~~~~~--------------  143 (459)
                      ++|.+.....+..+..+++|++|++++|.+...    .+..+++|  ++|++++|.+......+..              
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence            999887422235788999999999999988753    46667777  9999998877111112222              


Q ss_pred             ------------ccCCCcccEEEccCCc-------ccccccccccccCcccccEEEccccccccccchhcc---CCCCCc
Q 039778          144 ------------IGSFPSLKTLYLKSNN-------FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLA---NLTSLR  201 (459)
Q Consensus       144 ------------~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~  201 (459)
                                  +..+++|+.+++++|.       +.+.   ...+..+++|+.|++.++.+.+..+..+.   ..++|+
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI---LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH---HHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecc---hhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence                        3357788888888875       2222   22467788999999998877653322221   246899


Q ss_pred             EEEcCCCcCcCcCCCCcc----cCCCcccEEEeecceeeeeccccccccc---CCceeeecCccccCCcccCcCCCCCcc
Q 039778          202 VLHVPDNQLTGNLSSSPL----MHLTSIEVLLLSNNHFQIPISLEPFFNY---SKLKIFHANNSLSGPFRLPTRSRKNII  274 (459)
Q Consensus       202 ~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~L~  274 (459)
                      +|++++|.+.+.++...+    ..+++|+.++++++.+.  .....+..+   .+++.+........... ....+++|+
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~--~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~  327 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFL  327 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC--SCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCC
T ss_pred             EEEeecccccCccccchhhcccccCceeEecccccccee--cchhhhhcccccCceeEEEcCCCcccccc-chhhCCccc
Confidence            999999988766643322    78889999999888762  111112111   33444443222211111 126789999


Q ss_pred             EEEeccCccccccchhhhhcCCCccEEEeecCcCCC--CCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeec
Q 039778          275 ALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG--SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL  352 (459)
Q Consensus       275 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  352 (459)
                      +|++++|.+.+..|..+.. +++|+.|++++|.+.+  ..+..+..+++|++|++++|.+.+.++...+..+++|++|++
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L  406 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM  406 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred             EEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence            9999999999767766654 8999999999999985  344568899999999999999985588777777899999999


Q ss_pred             cccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCccc-ccCcccccEEEcCCCcccC
Q 039778          353 SNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTW-IGNISFLDAIIMPDNHLEG  431 (459)
Q Consensus       353 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~  431 (459)
                      ++|++++..+..+.  ++|++|++++|.+. .+|..+..+++|++|++++|++. .+|.. +..+++|+.|++++|++.+
T Consensus       407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence            99999876666554  79999999999998 67777779999999999999999 56664 8889999999999999985


Q ss_pred             C
Q 039778          432 P  432 (459)
Q Consensus       432 ~  432 (459)
                      .
T Consensus       483 ~  483 (520)
T 2z7x_B          483 S  483 (520)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.4e-38  Score=311.77  Aligned_cols=413  Identities=19%  Similarity=0.198  Sum_probs=303.1

Q ss_pred             ccccEEEeccccccC--CcccccCccCceEEc-CCCCCCcccccc-----------------------------------
Q 039778           26 SSLKNLSLAYNRLEG--SINIEGMNMLESLDL-SGNKFNSSILSS-----------------------------------   67 (459)
Q Consensus        26 ~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l-~~~~~~~~~~~~-----------------------------------   67 (459)
                      .+++.|+|+++.+.+  +..+.++++|++|+| +++.+....+..                                   
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            468888888887765  556888888888888 555443220000                                   


Q ss_pred             --------------c--ccCCCCcEEEccC--CcceeeeccccccCCCCCcEEECcccccCCc----------------c
Q 039778           68 --------------L--TALSSLRKLNLMA--TGFKGTFDVQELDSLSNLEELDMSDNEIDNL----------------V  113 (459)
Q Consensus        68 --------------~--~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------~  113 (459)
                                    +  ....+++.+.+..  |.+.+ ++. .+.++++|++|++++|.+...                .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                          0  1112333333332  45553 554 788999999999999999881                1


Q ss_pred             Cccccc--CCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc-ccc-cccc-cc----cccCcccccEEEcccc
Q 039778          114 VPKDYR--GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN-FAK-TVTT-TQ----GLCELVHLQDLYIDRN  184 (459)
Q Consensus       114 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~-~~----~~~~~~~L~~L~l~~~  184 (459)
                      +|..++  .+++|++|++++|.+...  +|..++++++|+.|++++|+ +.. ..+. ..    .+..+++|++|++++|
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             CChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            377776  999999999999987765  88899999999999999998 654 2221 11    2234559999999999


Q ss_pred             ccccccch--hccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCC-ceeeecCccccC
Q 039778          185 DFIGSLPW--CLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSK-LKIFHANNSLSG  261 (459)
Q Consensus       185 ~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~  261 (459)
                      .+. .+|.  .+..+++|++|++++|.+. .++  .+..+++|+.|++++|.+. . ....+..+++ |+.+........
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~-lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-E-IPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-C-CCTTSCEECTTCCEEECCSSCCC
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-c-chHHHhhccccCCEEECcCCCCC
Confidence            998 6777  8999999999999999988 665  7889999999999999877 2 2234666666 777764432222


Q ss_pred             CcccCcCCC--CCccEEEeccCccccccchhh---h-hcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc
Q 039778          262 PFRLPTRSR--KNIIALDISYNKLQGHIPVEI---G-KVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE  335 (459)
Q Consensus       262 ~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~---~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  335 (459)
                      .++..+...  ++|+.|++++|.+.+.+|...   . ...++|+.|++++|.+.......+..+++|+.|++++|.+. .
T Consensus       633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~  711 (876)
T 4ecn_A          633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-S  711 (876)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred             cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-c
Confidence            333333333  348889999888876554322   1 01457889999988888444444557888999999988887 7


Q ss_pred             cchhHHhc-------ccccceeeccccccccccccccc--cccCCceEEccCCcccCCCcccccccCCCcEEEccc----
Q 039778          336 IPEHLAMG-------CFNLEYLLLSNNSLQGQLFSKKN--NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISD----  402 (459)
Q Consensus       336 ~~~~~~~~-------~~~L~~L~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~----  402 (459)
                      +|...+..       +++|++|++++|++. .++..+.  .+++|+.|++++|.+.+ +|..+..+++|+.|++++    
T Consensus       712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l  789 (876)
T 4ecn_A          712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA  789 (876)
T ss_dssp             CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred             cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence            77766543       348899999999888 5566665  78889999999998886 677788888899998866    


Q ss_pred             --ccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778          403 --NDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA  454 (459)
Q Consensus       403 --~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  454 (459)
                        |.+.+.+|..+..+++|+.|+|++|.+ +.+|..+.  ++|+.|+|++|++.
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI  840 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence              677778888888889999999999988 47887654  68899999999876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-37  Score=293.16  Aligned_cols=365  Identities=21%  Similarity=0.162  Sum_probs=216.7

Q ss_pred             ccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEE
Q 039778           48 NMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFL  127 (459)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  127 (459)
                      ++|++|++++|.++...+..+.++++|++|+++++.+...++...+..+++|++|++++|.+.... +..+..+++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE-TGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC-TTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC-hhhccCcccCCEE
Confidence            566666666666665556666666666666666666554455555666666666666666665543 4556666666666


Q ss_pred             ecCCCccCCCCcccc--cccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCC--CCCcEE
Q 039778          128 DLSGLRIRDGSKVLH--SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANL--TSLRVL  203 (459)
Q Consensus       128 ~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L  203 (459)
                      ++++|.+.+.  .+.  .+..+++|++|++++|.+....+. ..+..+++|++|++++|.+.+..+..+..+  ..|+.+
T Consensus       109 ~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L  185 (455)
T 3v47_A          109 TLTQCNLDGA--VLSGNFFKPLTSLEMLVLRDNNIKKIQPA-SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL  185 (455)
T ss_dssp             ECTTSCCBTH--HHHSSTTTTCTTCCEEECCSSBCCSCCCC-GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred             eCCCCCCCcc--ccCcccccCcccCCEEECCCCccCccCcc-cccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence            6666665432  222  255666666666666665443222 114455666666666666555555444433  456666


Q ss_pred             EcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCcc
Q 039778          204 HVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKL  283 (459)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  283 (459)
                      +++++.+.+ +....+..                                        ........+++|++|++++|.+
T Consensus       186 ~l~~n~l~~-~~~~~~~~----------------------------------------~~~~~~~~~~~L~~L~Ls~n~l  224 (455)
T 3v47_A          186 RLSSITLQD-MNEYWLGW----------------------------------------EKCGNPFKNTSITTLDLSGNGF  224 (455)
T ss_dssp             ECTTCBCTT-CSTTCTTH----------------------------------------HHHCCTTTTCEEEEEECTTSCC
T ss_pred             ccccCcccc-cchhhccc----------------------------------------cccccccccceeeeEecCCCcc
Confidence            666655442 11111000                                        0000011123344444444444


Q ss_pred             ccccchhhhhc--CCCccEEEeecCcCCCC----------CCCccc--CCCCCcEEEccCCccccccchhHHhcccccce
Q 039778          284 QGHIPVEIGKV--LPNLGFLSITFNAFNGS----------IPSSFG--DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  349 (459)
Q Consensus       284 ~~~~~~~~~~~--~~~L~~L~L~~~~~~~~----------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  349 (459)
                      .+..+..+...  .++++.++++++.....          ....+.  ..++|+.|++++|.+.+ .+...+..+++|++
T Consensus       225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~  303 (455)
T 3v47_A          225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQ  303 (455)
T ss_dssp             CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred             cccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhcccCCCCCE
Confidence            43333333221  14455555544432211          111111  12577888888887773 33334455778888


Q ss_pred             eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778          350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL  429 (459)
Q Consensus       350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  429 (459)
                      |++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus       304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  383 (455)
T 3v47_A          304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL  383 (455)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence            88888887776677777778888888888887766677777788888888888888766677777788888888888888


Q ss_pred             cCCCchhhcCCCcccEEeccCCcccccCC
Q 039778          430 EGPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       430 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      .+..+..+..+++|+.|++++|++++..|
T Consensus       384 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          384 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            75445556777888888888888887776

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.2e-37  Score=288.71  Aligned_cols=136  Identities=24%  Similarity=0.237  Sum_probs=65.8

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  350 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  350 (459)
                      ++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVL  352 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEE
T ss_pred             cCceEEEecCccccccchhhcc-cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEE
Confidence            4455555555555533333322 2455555555555555444444555555555555555554 3333333345555555


Q ss_pred             eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCC
Q 039778          351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGS  408 (459)
Q Consensus       351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  408 (459)
                      ++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++...
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            5555555444444444555555555555555443333344445555555555554433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.6e-35  Score=276.29  Aligned_cols=345  Identities=26%  Similarity=0.325  Sum_probs=214.9

Q ss_pred             CccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEEC
Q 039778           25 LSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDM  104 (459)
Q Consensus        25 ~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  104 (459)
                      ++++++|+++++.+.....+..+++|++|++++|.+....+  +.++++|++|+++++.+.. .+  .+..+++|++|++
T Consensus        45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L  119 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT--PLANLTNLTGLTL  119 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEEC
T ss_pred             hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Ch--hhcCCCCCCEEEC
Confidence            45677777777766665556677777777777777654332  6677777777777776652 22  2666777777777


Q ss_pred             cccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccc
Q 039778          105 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRN  184 (459)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  184 (459)
                      ++|.+....   .+..+++|++|++++|.+...   + .+..+++|+.|++.+ .+...    ..+..+++|++|++++|
T Consensus       120 ~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~---~-~~~~l~~L~~L~l~~-~~~~~----~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          120 FNNQITDID---PLKNLTNLNRLELSSNTISDI---S-ALSGLTSLQQLSFGN-QVTDL----KPLANLTTLERLDISSN  187 (466)
T ss_dssp             CSSCCCCCG---GGTTCTTCSEEEEEEEEECCC---G-GGTTCTTCSEEEEEE-SCCCC----GGGTTCTTCCEEECCSS
T ss_pred             CCCCCCCCh---HHcCCCCCCEEECCCCccCCC---h-hhccCCcccEeecCC-cccCc----hhhccCCCCCEEECcCC
Confidence            777666652   266777777777777766542   2 356677777777652 22211    12556667777777777


Q ss_pred             ccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcc
Q 039778          185 DFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFR  264 (459)
Q Consensus       185 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  264 (459)
                      .+.+.  ..+..+++|++|++++|.+.+..   .+..+++|+.|++++|.+...                          
T Consensus       188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~--------------------------  236 (466)
T 1o6v_A          188 KVSDI--SVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDI--------------------------  236 (466)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCC--------------------------
T ss_pred             cCCCC--hhhccCCCCCEEEecCCcccccc---cccccCCCCEEECCCCCcccc--------------------------
Confidence            66543  23556677777777777665322   255566777777766654311                          


Q ss_pred             cCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcc
Q 039778          265 LPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC  344 (459)
Q Consensus       265 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  344 (459)
                      ..+..+++|++|++++|.+.+..+   ...+++|+.|++++|.+....+  +..+++|+.|++++|.+. .++.  +..+
T Consensus       237 ~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l  308 (466)
T 1o6v_A          237 GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-DISP--ISNL  308 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS-CCGG--GGGC
T ss_pred             hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc-Cchh--hcCC
Confidence            012344567777777776663322   3336777777777777664322  666777777777777766 3332  3456


Q ss_pred             cccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEc
Q 039778          345 FNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIM  424 (459)
Q Consensus       345 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  424 (459)
                      ++|++|++++|++.+..+  +..+++|++|++++|++.+.  ..+..+++|++|++++|++.+..|  +..+++|+.|++
T Consensus       309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  382 (466)
T 1o6v_A          309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  382 (466)
T ss_dssp             TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence            777777777777665433  55667777777777776643  346667777777777777765444  566777777777


Q ss_pred             CCCcccC
Q 039778          425 PDNHLEG  431 (459)
Q Consensus       425 ~~~~~~~  431 (459)
                      ++|.+++
T Consensus       383 ~~n~~~~  389 (466)
T 1o6v_A          383 NDQAWTN  389 (466)
T ss_dssp             CCEEEEC
T ss_pred             cCCcccC
Confidence            7776663

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.3e-35  Score=275.33  Aligned_cols=344  Identities=24%  Similarity=0.349  Sum_probs=287.0

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccC
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMA   81 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   81 (459)
                      +++++|+++++.++...  .+..+++|++|++++|.+.+...+..+++|++|++++|.+....+  +.++++|++|++++
T Consensus        46 ~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN  121 (466)
T ss_dssp             HTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             ccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence            57999999999987543  477899999999999998886669999999999999999875444  99999999999999


Q ss_pred             CcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccc
Q 039778           82 TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA  161 (459)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (459)
                      |.+.. .+  .+..+++|++|++++|.+...   ..+..+++|++|++.+ .+..   . ..+..+++|+.|++++|.+.
T Consensus       122 n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~-~~~~---~-~~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          122 NQITD-ID--PLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGN-QVTD---L-KPLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             SCCCC-CG--GGTTCTTCSEEEEEEEEECCC---GGGTTCTTCSEEEEEE-SCCC---C-GGGTTCTTCCEEECCSSCCC
T ss_pred             CCCCC-Ch--HHcCCCCCCEEECCCCccCCC---hhhccCCcccEeecCC-cccC---c-hhhccCCCCCEEECcCCcCC
Confidence            98773 33  488999999999999998886   3588999999999963 3333   2 23889999999999999886


Q ss_pred             ccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccc
Q 039778          162 KTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISL  241 (459)
Q Consensus       162 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  241 (459)
                      ...    .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ +  ..+..+++|+.|++++|.+....  
T Consensus       191 ~~~----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~--  259 (466)
T 1o6v_A          191 DIS----VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I--GTLASLTNLTDLDLANNQISNLA--  259 (466)
T ss_dssp             CCG----GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCG--
T ss_pred             CCh----hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c--hhhhcCCCCCEEECCCCccccch--
Confidence            542    36788999999999999887655  6678999999999998873 3  45788999999999998765211  


Q ss_pred             ccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCC
Q 039778          242 EPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNS  321 (459)
Q Consensus       242 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~  321 (459)
                                              .+..+++|++|++++|.+.+ ++.  ...+++|+.|++++|.+.+..  .+..+++
T Consensus       260 ------------------------~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~  310 (466)
T 1o6v_A          260 ------------------------PLSGLTKLTELKLGANQISN-ISP--LAGLTALTNLELNENQLEDIS--PISNLKN  310 (466)
T ss_dssp             ------------------------GGTTCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTT
T ss_pred             ------------------------hhhcCCCCCEEECCCCccCc-ccc--ccCCCccCeEEcCCCcccCch--hhcCCCC
Confidence                                    13456889999999999884 443  344899999999999998643  3788999


Q ss_pred             CcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcc
Q 039778          322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYIS  401 (459)
Q Consensus       322 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  401 (459)
                      |+.|++++|.+++..+   +..+++|+.|++++|++.+.  ..+..+++|++|++++|++.+..|  +..+++|+.|+++
T Consensus       311 L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  383 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN  383 (466)
T ss_dssp             CSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred             CCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence            9999999999985444   45699999999999999864  578889999999999999987765  7889999999999


Q ss_pred             cccccC
Q 039778          402 DNDITG  407 (459)
Q Consensus       402 ~~~~~~  407 (459)
                      +|++.+
T Consensus       384 ~n~~~~  389 (466)
T 1o6v_A          384 DQAWTN  389 (466)
T ss_dssp             CEEEEC
T ss_pred             CCcccC
Confidence            999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.2e-36  Score=290.38  Aligned_cols=414  Identities=22%  Similarity=0.246  Sum_probs=304.3

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+.+  +..|.++++|++|++++|.++ ..+..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            579999999999999988999999999999999998876  456899999999999999997 44444  8999999999


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCC--cEEecCCCcc--CCCCccccc------------
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKL--RFLDLSGLRI--RDGSKVLHS------------  143 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~------------  143 (459)
                      ++|.+...-....+..+++|++|+++++.+...    .+..+++|  ++|++++|.+  ...  .+..            
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~--~~~~l~~l~~~~l~l~  202 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGG--ETESLQIPNTTVLHLV  202 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSS--SCCEEEECCEEEEEEE
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEeeccccccccc--CcccccccCcceEEEE
Confidence            999987322235788999999999999988764    34445555  9999998877  322  2222            


Q ss_pred             --------------ccCCCcccEEEccCCccc--ccccccccccCcccccEEEcccccccccc----chhccCCCCCcEE
Q 039778          144 --------------IGSFPSLKTLYLKSNNFA--KTVTTTQGLCELVHLQDLYIDRNDFIGSL----PWCLANLTSLRVL  203 (459)
Q Consensus       144 --------------~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L  203 (459)
                                    +..+++|+.+++++|...  ........+..++.|+.+++.++.+.+..    +..+ ..++|++|
T Consensus       203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L  281 (562)
T 3a79_B          203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYL  281 (562)
T ss_dssp             ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEE
T ss_pred             ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEE
Confidence                          235667888888877421  11112224566778888888777654321    1222 24589999


Q ss_pred             EcCCCcCcCcCCCCcc----cCCCcccEEEeecceeeeeccccccc---ccCCceeeecCccccCCcccCcCCCCCccEE
Q 039778          204 HVPDNQLTGNLSSSPL----MHLTSIEVLLLSNNHFQIPISLEPFF---NYSKLKIFHANNSLSGPFRLPTRSRKNIIAL  276 (459)
Q Consensus       204 ~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L  276 (459)
                      ++++|.+.+.++...+    ..++.|+.+++..+.+.  ...+.+.   ...+++.+........... ....+++|++|
T Consensus       282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~--~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L  358 (562)
T 3a79_B          282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL--FSKEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFL  358 (562)
T ss_dssp             EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCS--SCHHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEE
T ss_pred             EEeccEeeccccchhhhcccccchheehhhcccceee--cChhhhhhhhccCcceEEEccCCCccccc-CccCCCCceEE
Confidence            9999888766644332    44555555555544431  1101111   1123444442222111111 12578899999


Q ss_pred             EeccCccccccchhhhhcCCCccEEEeecCcCCCCC--CCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccc
Q 039778          277 DISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSI--PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN  354 (459)
Q Consensus       277 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  354 (459)
                      ++++|.+.+..|..+.. +++|+.|++++|.+....  +..+..+++|+.|++++|.+.+.++...+..+++|++|++++
T Consensus       359 ~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~  437 (562)
T 3a79_B          359 NFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS  437 (562)
T ss_dssp             ECCSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred             ECCCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence            99999999766666544 899999999999998643  356888999999999999998558887777899999999999


Q ss_pred             cccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCccc-ccCcccccEEEcCCCcccCCC
Q 039778          355 NSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTW-IGNISFLDAIIMPDNHLEGPI  433 (459)
Q Consensus       355 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~  433 (459)
                      |++++..+..+.  ++|++|++++|.+. .+|..+..+++|++|++++|++. .+|.. +..+++|+.|++++|++.+..
T Consensus       438 n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          438 NMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             SCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             CCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            999876655543  79999999999988 56666669999999999999999 66665 889999999999999998643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.9e-35  Score=286.28  Aligned_cols=425  Identities=21%  Similarity=0.170  Sum_probs=301.8

Q ss_pred             CCCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEE
Q 039778            1 LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLN   78 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   78 (459)
                      +++|++|++++|.++...+++|.++++|++|++++|.+..  ...|.++++|++|++++|+++...+..|+++++|++|+
T Consensus        75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~  154 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  154 (635)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence            5799999999999999999999999999999999999876  34689999999999999999877777899999999999


Q ss_pred             ccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCC----cEEecCCCccCCCCc---------------
Q 039778           79 LMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKL----RFLDLSGLRIRDGSK---------------  139 (459)
Q Consensus        79 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~---------------  139 (459)
                      +++|.+........+..+++|++|++++|.+.... +..+..+.++    ..++++.+.+.....               
T Consensus       155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~  233 (635)
T 4g8a_A          155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN  233 (635)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred             cccCccccCCCchhhccchhhhhhcccCccccccc-cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhc
Confidence            99998864333456788999999999999887764 3444333322    234444443321100               


Q ss_pred             -------ccccccCCCcccEEEccC------------------------------Ccccccc-cccccccCcccccEEEc
Q 039778          140 -------VLHSIGSFPSLKTLYLKS------------------------------NNFAKTV-TTTQGLCELVHLQDLYI  181 (459)
Q Consensus       140 -------~~~~~~~~~~L~~L~l~~------------------------------~~~~~~~-~~~~~~~~~~~L~~L~l  181 (459)
                             ....+..+..++...+..                              +...... .....+....+++.+.+
T Consensus       234 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~  313 (635)
T 4g8a_A          234 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSL  313 (635)
T ss_dssp             CCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEE
T ss_pred             ccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccc
Confidence                   000111122222211110                              0000000 00001122334444444


Q ss_pred             cccccccccchhccCC---------------------CCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec-
Q 039778          182 DRNDFIGSLPWCLANL---------------------TSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI-  239 (459)
Q Consensus       182 ~~~~~~~~~~~~l~~~---------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-  239 (459)
                      .++.+....  .+...                     +.|+.+.+..+....   ......+++|+.++++.|.+.... 
T Consensus       314 ~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~---~~~~~~l~~L~~L~ls~n~l~~~~~  388 (635)
T 4g8a_A          314 VSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSFKGC  388 (635)
T ss_dssp             ESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC---BCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred             ccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC---Ccccccccccccchhhccccccccc
Confidence            444332211  12223                     344444444443331   122346788999999888765322 


Q ss_pred             ccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCC
Q 039778          240 SLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDM  319 (459)
Q Consensus       240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~  319 (459)
                      .........+++.+.............+..+++|+.+++.++......+...+..+++++.++++.+.+....+..+..+
T Consensus       389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~  468 (635)
T 4g8a_A          389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL  468 (635)
T ss_dssp             CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc
Confidence            22234455666666654444444445567789999999999887766666666668999999999999988888888999


Q ss_pred             CCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEE
Q 039778          320 NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLY  399 (459)
Q Consensus       320 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  399 (459)
                      +.++.|++++|...+.++...+..+++|++|++++|++.+..+..|..+++|++|+|++|.+.+..+..+..+++|++|+
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  548 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  548 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence            99999999999765455555667799999999999999988889999999999999999999988888899999999999


Q ss_pred             cccccccCCCcccccCc-ccccEEEcCCCcccC
Q 039778          400 ISDNDITGSIPTWIGNI-SFLDAIIMPDNHLEG  431 (459)
Q Consensus       400 l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~  431 (459)
                      +++|++.+..|..+..+ ++|+.|+|++|++.+
T Consensus       549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            99999998888888887 689999999998763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.7e-35  Score=271.52  Aligned_cols=350  Identities=19%  Similarity=0.194  Sum_probs=203.9

Q ss_pred             hhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCC
Q 039778           19 LSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSN   98 (459)
Q Consensus        19 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   98 (459)
                      +..+..+++|++|+++++.+.+...+..+++|++|++++|.++..   .+..+++|++|++++|.+.+ .   .+..+++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~---~~~~l~~  107 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-L---DVTPLTK  107 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-C---CCTTCTT
T ss_pred             ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-e---ecCCCCc
Confidence            334555666777777766666555566667777777777666542   16666677777777666552 2   2556667


Q ss_pred             CcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccE
Q 039778           99 LEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD  178 (459)
Q Consensus        99 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  178 (459)
                      |++|++++|.+..+  +  +..+++|++|++++|.+...     .++.+++|+.|++++|...+..    .+..+++|++
T Consensus       108 L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N~l~~l-----~l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~  174 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL--D--VSQNPLLTYLNCARNTLTEI-----DVSHNTQLTELDCHLNKKITKL----DVTPQTQLTT  174 (457)
T ss_dssp             CCEEECCSSCCSCC--C--CTTCTTCCEEECTTSCCSCC-----CCTTCTTCCEEECTTCSCCCCC----CCTTCTTCCE
T ss_pred             CCEEECCCCcCCee--c--CCCCCcCCEEECCCCcccee-----ccccCCcCCEEECCCCCccccc----ccccCCcCCE
Confidence            77777777766654  2  56666777777777666552     2556667777777666432222    2455666777


Q ss_pred             EEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCcc
Q 039778          179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNS  258 (459)
Q Consensus       179 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  258 (459)
                      |++++|.+.+. +  +..+++|++|++++|.+.+ +   .+..+++|+.|++++|.+..                     
T Consensus       175 L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~---------------------  226 (457)
T 3bz5_A          175 LDCSFNKITEL-D--VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTE---------------------  226 (457)
T ss_dssp             EECCSSCCCCC-C--CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSC---------------------
T ss_pred             EECCCCcccee-c--cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCcccc---------------------
Confidence            77777766553 2  5566677777777766652 2   35566777777777665542                     


Q ss_pred             ccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccch
Q 039778          259 LSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPE  338 (459)
Q Consensus       259 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  338 (459)
                            .++..+++|+.|++++|.+.+ ++.   ..+++|+.++++.+              +|+.+++++|...+.+|.
T Consensus       227 ------ip~~~l~~L~~L~l~~N~l~~-~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~  282 (457)
T 3bz5_A          227 ------IDVTPLTQLTYFDCSVNPLTE-LDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA  282 (457)
T ss_dssp             ------CCCTTCTTCSEEECCSSCCSC-CCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC
T ss_pred             ------cCccccCCCCEEEeeCCcCCC-cCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc
Confidence                  012344566666666666653 221   12555666555443              233444444443333331


Q ss_pred             hHHhcccccceeecccccccccccc--------ccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCc
Q 039778          339 HLAMGCFNLEYLLLSNNSLQGQLFS--------KKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP  410 (459)
Q Consensus       339 ~~~~~~~~L~~L~l~~~~i~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  410 (459)
                         ..+++|+.|++++|...+..+.        .+..+++|++|++++|.+.+.   .+..+++|+.|++++|++.+   
T Consensus       283 ---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~---  353 (457)
T 3bz5_A          283 ---EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD---  353 (457)
T ss_dssp             ---TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB---
T ss_pred             ---cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC---
Confidence               2244555555555443222211        123346777777777777753   26677777777777777763   


Q ss_pred             ccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCCC
Q 039778          411 TWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       411 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~  459 (459)
                           +++|..|++++|.+.+.     .++..|+.+++++|+++|.+|+
T Consensus       354 -----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          354 -----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             -----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             -----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence                 23455555666666543     2445566777888888887774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.5e-34  Score=266.76  Aligned_cols=372  Identities=21%  Similarity=0.247  Sum_probs=210.3

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCcc-------------CceEEcCCCCCCccccc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNM-------------LESLDLSGNKFNSSILS   66 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~-------------L~~L~l~~~~~~~~~~~   66 (459)
                      ++|++|+++++.+ +..|..+..+++|++|++++|.+.+  +..+..+.+             +++|++++|.++. .+.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence            5789999999999 6888889999999999999998764  555677665             4899999998764 332


Q ss_pred             ccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccC
Q 039778           67 SLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGS  146 (459)
Q Consensus        67 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  146 (459)
                         ..++|++|+++++.+.+ ++.    .+++|++|++++|.+..+  +..   .++|++|++++|.+..   ++ .+++
T Consensus        89 ---~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l--~~~---~~~L~~L~L~~n~l~~---lp-~~~~  151 (454)
T 1jl5_A           89 ---LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKAL--SDL---PPLLEYLGVSNNQLEK---LP-ELQN  151 (454)
T ss_dssp             ---CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCC--CSC---CTTCCEEECCSSCCSS---CC-CCTT
T ss_pred             ---CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcc--cCC---CCCCCEEECcCCCCCC---Cc-ccCC
Confidence               23789999999888773 432    247899999999988765  221   2689999999998875   55 5888


Q ss_pred             CCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCccc
Q 039778          147 FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIE  226 (459)
Q Consensus       147 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  226 (459)
                      +++|++|++++|.+......      ..+|++|++++|.+.+ .| .+..+++|++|++++|.+.+ ++.    ..++|+
T Consensus       152 l~~L~~L~l~~N~l~~lp~~------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~  218 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLE  218 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCC
T ss_pred             CCCCCEEECCCCcCcccCCC------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCccc
Confidence            99999999999988654322      2489999999998876 44 57888999999999988773 322    235889


Q ss_pred             EEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecC
Q 039778          227 VLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFN  306 (459)
Q Consensus       227 ~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~  306 (459)
                      .|++++|.+..   ...+.                       .+++|++|++++|.+. .+|.    .+++|+.|++++|
T Consensus       219 ~L~l~~n~l~~---lp~~~-----------------------~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N  267 (454)
T 1jl5_A          219 SIVAGNNILEE---LPELQ-----------------------NLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDN  267 (454)
T ss_dssp             EEECCSSCCSS---CCCCT-----------------------TCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSS
T ss_pred             EEECcCCcCCc---ccccC-----------------------CCCCCCEEECCCCcCC-cccc----cccccCEEECCCC
Confidence            99998886651   11233                       3455566666665555 2332    1355666666666


Q ss_pred             cCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccc-cCCceEEccCCcccCCC
Q 039778          307 AFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNL-TKLKRLNLDGNHFIGDI  385 (459)
Q Consensus       307 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~-~~L~~L~l~~~~~~~~~  385 (459)
                      .+.+. +..   .++|+.|++++|.++ .++.    ..++|++|++++|.+.+.     ... ++|++|++++|.+.+ +
T Consensus       268 ~l~~l-~~~---~~~L~~L~ls~N~l~-~l~~----~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-l  332 (454)
T 1jl5_A          268 YLTDL-PEL---PQSLTFLDVSENIFS-GLSE----LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-L  332 (454)
T ss_dssp             CCSCC-CCC---CTTCCEEECCSSCCS-EESC----CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-C
T ss_pred             ccccc-Ccc---cCcCCEEECcCCccC-cccC----cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-c
Confidence            55532 111   245666666666555 2221    124566666666655431     112 356666666665553 2


Q ss_pred             cccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccC--CCchhhcCC-------------CcccEEeccC
Q 039778          386 PESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG--PIPSEFCQL-------------DYLEILDLSK  450 (459)
Q Consensus       386 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~  450 (459)
                      |..   +++|++|++++|.+. .+|.   .+++|+.|++++|++.+  .+|..+..+             ++|+.|++++
T Consensus       333 p~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~  405 (454)
T 1jl5_A          333 PAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET  405 (454)
T ss_dssp             CCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------
T ss_pred             ccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC
Confidence            322   345666666666555 3443   24556666666666554  455555444             5666666666


Q ss_pred             Ccccc--cCC
Q 039778          451 NNIAG--SLP  458 (459)
Q Consensus       451 ~~~~~--~~p  458 (459)
                      |++++  .+|
T Consensus       406 N~l~~~~~iP  415 (454)
T 1jl5_A          406 NPLREFPDIP  415 (454)
T ss_dssp             ----------
T ss_pred             CcCCccccch
Confidence            66665  555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.7e-33  Score=265.62  Aligned_cols=320  Identities=19%  Similarity=0.193  Sum_probs=207.5

Q ss_pred             cEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccc
Q 039778           29 KNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNE  108 (459)
Q Consensus        29 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  108 (459)
                      +.++.++..+...+. .-.+++++|++++|+++...+..|.++++|++|++++|.+. .+....+..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCc
Confidence            455555555444221 12357778888888777666677777788888888777766 3444467777777777777777


Q ss_pred             cCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccccccc
Q 039778          109 IDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIG  188 (459)
Q Consensus       109 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  188 (459)
                      +..+. +..+..+++|++|++++|.+...  .+..+..+++|++|++++|.+....+.  .+..+++|++|++++|.+.+
T Consensus        92 l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A           92 LKLIP-LGVFTGLSNLTKLDISENKIVIL--LDYMFQDLYNLKSLEVGDNDLVYISHR--AFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             CCSCC-TTSSTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEEECCTTCCEECTT--SSTTCTTCCEEEEESCCCSS
T ss_pred             CCccC-cccccCCCCCCEEECCCCccccC--ChhHccccccCCEEECCCCccceeChh--hccCCCCCCEEECCCCcCcc
Confidence            76653 34466677777777777766543  344556666666666666655433222  34455555555555555554


Q ss_pred             ccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcC
Q 039778          189 SLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTR  268 (459)
Q Consensus       189 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  268 (459)
                      ..+..+..+++|+.|+++++.+. .+....+..+                                              
T Consensus       167 ~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l----------------------------------------------  199 (477)
T 2id5_A          167 IPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRL----------------------------------------------  199 (477)
T ss_dssp             CCHHHHTTCTTCCEEEEESCCCC-EECTTCSCSC----------------------------------------------
T ss_pred             cChhHhcccCCCcEEeCCCCcCc-EeChhhcccC----------------------------------------------
Confidence            44444555555555555555443 2222333333                                              


Q ss_pred             CCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccc
Q 039778          269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE  348 (459)
Q Consensus       269 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  348 (459)
                        ++|++|++++|...+.++..... ..+|+.|++++|.+.......+..+++|+.|++++|.+. .++...+..+++|+
T Consensus       200 --~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~  275 (477)
T 2id5_A          200 --YRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQ  275 (477)
T ss_dssp             --TTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCC
T ss_pred             --cccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCC
Confidence              44555555554444445544443 457888888888887555556778888888888888887 55555566688888


Q ss_pred             eeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778          349 YLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       349 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  406 (459)
                      +|++++|++.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|++.
T Consensus       276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            8888888888777777888888888888888887766667777888888888888776

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.8e-33  Score=263.84  Aligned_cols=320  Identities=22%  Similarity=0.272  Sum_probs=199.1

Q ss_pred             eEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCC
Q 039778           52 SLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSG  131 (459)
Q Consensus        52 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  131 (459)
                      .++.++..++ ..+..+  .+++++|+++++.+. .++...+..+++|++|++++|.+.... +..+..+++|++|++++
T Consensus        15 ~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             EEECCSCCCS-SCCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcC-cCCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCC
Confidence            4555555544 223222  246666666666655 333345666666666666666655543 34555666666666666


Q ss_pred             CccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCc
Q 039778          132 LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLT  211 (459)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  211 (459)
                      |.+...  .+..+.++++|++|++++|.+....+.  .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus        90 n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           90 NRLKLI--PLGVFTGLSNLTKLDISENKIVILLDY--MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             SCCCSC--CTTSSTTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CcCCcc--CcccccCCCCCCEEECCCCccccCChh--HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            655442  222345555566666655555433222  2444555555555555544444444444555555555554443


Q ss_pred             CcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhh
Q 039778          212 GNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEI  291 (459)
Q Consensus       212 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  291 (459)
                       .++...+..+++                                                |+.|+++++.+. .++...
T Consensus       166 -~~~~~~l~~l~~------------------------------------------------L~~L~l~~n~i~-~~~~~~  195 (477)
T 2id5_A          166 -SIPTEALSHLHG------------------------------------------------LIVLRLRHLNIN-AIRDYS  195 (477)
T ss_dssp             -SCCHHHHTTCTT------------------------------------------------CCEEEEESCCCC-EECTTC
T ss_pred             -ccChhHhcccCC------------------------------------------------CcEEeCCCCcCc-EeChhh
Confidence             222223334444                                                444444444444 233333


Q ss_pred             hhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCC
Q 039778          292 GKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKL  371 (459)
Q Consensus       292 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L  371 (459)
                      +..+++|+.|++++|......+.......+|+.|++++|.++ .++...+..+++|+.|++++|.+.+..+..|..+++|
T Consensus       196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  274 (477)
T 2id5_A          196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL  274 (477)
T ss_dssp             SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred             cccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccC
Confidence            334788888888888776555555555568888888888887 7777677778888888888888887777778888888


Q ss_pred             ceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccC
Q 039778          372 KRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG  431 (459)
Q Consensus       372 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  431 (459)
                      ++|++++|.+.+..+.++..+++|++|++++|.+....+..+..+++|+.|++++|++.+
T Consensus       275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            888888888887777788888888888888888886555667788888888888888774

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.6e-32  Score=248.01  Aligned_cols=309  Identities=25%  Similarity=0.389  Sum_probs=175.1

Q ss_pred             cccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCC
Q 039778           42 INIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGL  121 (459)
Q Consensus        42 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  121 (459)
                      ..+..+++|++|+++++.+...  ..+..+++|++|++++|.+. .++.  +..+++|++|++++|.+...   ..+..+
T Consensus        38 ~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~---~~~~~l  109 (347)
T 4fmz_A           38 VTQEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI---SALQNL  109 (347)
T ss_dssp             ECHHHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC---GGGTTC
T ss_pred             ccchhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc---hHHcCC
Confidence            3444556666666666655421  23555566666666555544 2221  45555555555555555443   234555


Q ss_pred             CCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCc
Q 039778          122 RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLR  201 (459)
Q Consensus       122 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  201 (459)
                      ++|++|+++++.+...   +. +..+++|+.|++++|..                          ....+ .+..+++|+
T Consensus       110 ~~L~~L~l~~n~i~~~---~~-~~~l~~L~~L~l~~n~~--------------------------~~~~~-~~~~l~~L~  158 (347)
T 4fmz_A          110 TNLRELYLNEDNISDI---SP-LANLTKMYSLNLGANHN--------------------------LSDLS-PLSNMTGLN  158 (347)
T ss_dssp             TTCSEEECTTSCCCCC---GG-GTTCTTCCEEECTTCTT--------------------------CCCCG-GGTTCTTCC
T ss_pred             CcCCEEECcCCcccCc---hh-hccCCceeEEECCCCCC--------------------------ccccc-chhhCCCCc
Confidence            5555555555554432   11 44445555555554432                          22211 244455555


Q ss_pred             EEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccC
Q 039778          202 VLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYN  281 (459)
Q Consensus       202 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  281 (459)
                      +|+++++.+.+ +  ..+..+++|+.|++++|.+.                                             
T Consensus       159 ~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~n~l~---------------------------------------------  190 (347)
T 4fmz_A          159 YLTVTESKVKD-V--TPIANLTDLYSLSLNYNQIE---------------------------------------------  190 (347)
T ss_dssp             EEECCSSCCCC-C--GGGGGCTTCSEEECTTSCCC---------------------------------------------
T ss_pred             EEEecCCCcCC-c--hhhccCCCCCEEEccCCccc---------------------------------------------
Confidence            55555554431 1  11334444444444443221                                             


Q ss_pred             ccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccccc
Q 039778          282 KLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQL  361 (459)
Q Consensus       282 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  361 (459)
                          .++.  ...+++|+.+++++|.+.....  +..+++|++|++++|.++ .++.  +..+++|++|++++|.+++. 
T Consensus       191 ----~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~-  258 (347)
T 4fmz_A          191 ----DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI-  258 (347)
T ss_dssp             ----CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred             ----cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC-
Confidence                1111  1124445555555554443221  455566666666666665 3333  44567777777777776652 


Q ss_pred             ccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCC
Q 039778          362 FSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLD  441 (459)
Q Consensus       362 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  441 (459)
                       ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++..|  +..++
T Consensus       259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~  333 (347)
T 4fmz_A          259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS  333 (347)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred             -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence             4566778888888888887754  456778888888888888887777778888888888888888885444  77888


Q ss_pred             cccEEeccCCccc
Q 039778          442 YLEILDLSKNNIA  454 (459)
Q Consensus       442 ~L~~L~l~~~~~~  454 (459)
                      +|+.|++++|+++
T Consensus       334 ~L~~L~l~~N~i~  346 (347)
T 4fmz_A          334 KMDSADFANQVIK  346 (347)
T ss_dssp             TCSEESSSCC---
T ss_pred             ccceeehhhhccc
Confidence            8889999888876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.7e-32  Score=247.85  Aligned_cols=306  Identities=25%  Similarity=0.357  Sum_probs=191.2

Q ss_pred             hcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcE
Q 039778           22 LAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEE  101 (459)
Q Consensus        22 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  101 (459)
                      +..+++|++|+++++.+.+...+..+++|++|++++|.+++..+  +..+++|++|++++|.+.. +  ..+..+++|++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~--~~~~~l~~L~~  114 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I--SALQNLTNLRE  114 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C--GGGTTCTTCSE
T ss_pred             chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c--hHHcCCCcCCE
Confidence            45678999999999988887779999999999999999875433  8999999999999998763 3  36889999999


Q ss_pred             EECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEc
Q 039778          102 LDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI  181 (459)
Q Consensus       102 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  181 (459)
                      |++++|.+....  . +..+++|++|++++|....   ....+..+++|+.|++++|.+.....    +..+++|++|++
T Consensus       115 L~l~~n~i~~~~--~-~~~l~~L~~L~l~~n~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l  184 (347)
T 4fmz_A          115 LYLNEDNISDIS--P-LANLTKMYSLNLGANHNLS---DLSPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSL  184 (347)
T ss_dssp             EECTTSCCCCCG--G-GTTCTTCCEEECTTCTTCC---CCGGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEEC
T ss_pred             EECcCCcccCch--h-hccCCceeEEECCCCCCcc---cccchhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEc
Confidence            999999988863  3 8899999999999986544   23347788889999988887654332    556677777777


Q ss_pred             cccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccC
Q 039778          182 DRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSG  261 (459)
Q Consensus       182 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  261 (459)
                      ++|.+.+..+  +..+++|+.++++++.+.+ .  ..+..+++|+.|++++|.                           
T Consensus       185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~--~~~~~~~~L~~L~l~~n~---------------------------  232 (347)
T 4fmz_A          185 NYNQIEDISP--LASLTSLHYFTAYVNQITD-I--TPVANMTRLNSLKIGNNK---------------------------  232 (347)
T ss_dssp             TTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C--GGGGGCTTCCEEECCSSC---------------------------
T ss_pred             cCCccccccc--ccCCCccceeecccCCCCC-C--chhhcCCcCCEEEccCCc---------------------------
Confidence            7776654333  5556666777666665542 1  113444444444444443                           


Q ss_pred             CcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHH
Q 039778          262 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA  341 (459)
Q Consensus       262 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  341 (459)
                                           +. ..+.  ...+++|+.|++++|.+...  ..+..+++|+.|++++|.++ .++  .+
T Consensus       233 ---------------------l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~~  283 (347)
T 4fmz_A          233 ---------------------IT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-DIS--VL  283 (347)
T ss_dssp             ---------------------CC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG--GG
T ss_pred             ---------------------cC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC-CCh--hh
Confidence                                 22 1111  12245555555555544432  23444555555555555554 221  12


Q ss_pred             hcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccc
Q 039778          342 MGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDI  405 (459)
Q Consensus       342 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  405 (459)
                      ..+++|++|++++|++.+..+..+..+++|++|++++|++.+..+  +..+++|++|++++|++
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            234445555555554444444444444445555555444443322  33444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.2e-32  Score=255.39  Aligned_cols=371  Identities=23%  Similarity=0.282  Sum_probs=256.3

Q ss_pred             CCCCcEEEccCCcccccchhhhcCCccc-------------cEEEeccccccCCcccccCccCceEEcCCCCCCcccccc
Q 039778            1 LSNLKFLDLSHNSFNNSVLSSLAGLSSL-------------KNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSS   67 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~   67 (459)
                      +++|++|++++|.+++..+..+..+++|             ++|+++++.+.+.+.+  .++|++|++++|.++. .+. 
T Consensus        33 L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~-lp~-  108 (454)
T 1jl5_A           33 VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTE-LPE-  108 (454)
T ss_dssp             -CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSS-CCC-
T ss_pred             ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCc-ccc-
Confidence            4788999999999998889888888765             9999999987774443  4789999999999875 443 


Q ss_pred             cccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCC
Q 039778           68 LTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF  147 (459)
Q Consensus        68 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  147 (459)
                        ..++|++|++++|.+.+ ++.  +  .++|++|++++|.+..+  + .+..+++|++|++++|.+..   ++..   .
T Consensus       109 --~~~~L~~L~l~~n~l~~-l~~--~--~~~L~~L~L~~n~l~~l--p-~~~~l~~L~~L~l~~N~l~~---lp~~---~  172 (454)
T 1jl5_A          109 --LPQSLKSLLVDNNNLKA-LSD--L--PPLLEYLGVSNNQLEKL--P-ELQNSSFLKIIDVDNNSLKK---LPDL---P  172 (454)
T ss_dssp             --CCTTCCEEECCSSCCSC-CCS--C--CTTCCEEECCSSCCSSC--C-CCTTCTTCCEEECCSSCCSC---CCCC---C
T ss_pred             --ccCCCcEEECCCCccCc-ccC--C--CCCCCEEECcCCCCCCC--c-ccCCCCCCCEEECCCCcCcc---cCCC---c
Confidence              34899999999997762 221  1  27999999999999875  5 58999999999999998876   4433   2


Q ss_pred             CcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccE
Q 039778          148 PSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEV  227 (459)
Q Consensus       148 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  227 (459)
                      ++|++|++++|.+....    .+..+++|++|++++|.+.+ .|..   .++|++|++++|.+. .++  .+..+++|+.
T Consensus       173 ~~L~~L~L~~n~l~~l~----~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp--~~~~l~~L~~  241 (454)
T 1jl5_A          173 PSLEFIAAGNNQLEELP----ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP--ELQNLPFLTT  241 (454)
T ss_dssp             TTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC--CCTTCTTCCE
T ss_pred             ccccEEECcCCcCCcCc----cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc--ccCCCCCCCE
Confidence            58999999999987642    37889999999999998875 3322   368999999999887 554  3789999999


Q ss_pred             EEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCc
Q 039778          228 LLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNA  307 (459)
Q Consensus       228 L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  307 (459)
                      |++++|.+....                            ...++|++|++++|.+.+ +|..    +++|+.|++++|.
T Consensus       242 L~l~~N~l~~l~----------------------------~~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~  288 (454)
T 1jl5_A          242 IYADNNLLKTLP----------------------------DLPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENI  288 (454)
T ss_dssp             EECCSSCCSSCC----------------------------SCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSC
T ss_pred             EECCCCcCCccc----------------------------ccccccCEEECCCCcccc-cCcc----cCcCCEEECcCCc
Confidence            999998765210                            123678889998888873 5542    4788999999888


Q ss_pred             CCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcc
Q 039778          308 FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPE  387 (459)
Q Consensus       308 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  387 (459)
                      +.+...    ..++|+.|++++|.+. .++.    ..++|++|++++|++.+ .+..   +++|++|++++|.+.. +|.
T Consensus       289 l~~l~~----~~~~L~~L~l~~N~l~-~i~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~  354 (454)
T 1jl5_A          289 FSGLSE----LPPNLYYLNASSNEIR-SLCD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE  354 (454)
T ss_dssp             CSEESC----CCTTCCEEECCSSCCS-EECC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC
T ss_pred             cCcccC----cCCcCCEEECcCCcCC-cccC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc
Confidence            764211    1258889999998887 3332    13588999999988875 3332   5789999999998874 444


Q ss_pred             cccccCCCcEEEcccccccC--CCcccccCc-------------ccccEEEcCCCcccC--CCchhhcCCCcccEEeccC
Q 039778          388 SLSNCSSLQGLYISDNDITG--SIPTWIGNI-------------SFLDAIIMPDNHLEG--PIPSEFCQLDYLEILDLSK  450 (459)
Q Consensus       388 ~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~  450 (459)
                         .+++|++|++++|++.+  .+|..+..+             ++|+.|++++|.+.+  .+|.      +++.|.+++
T Consensus       355 ---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~  425 (454)
T 1jl5_A          355 ---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNS  425 (454)
T ss_dssp             ---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------------------
T ss_pred             ---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcC
Confidence               46789999999998887  677777766             789999999999985  4553      466778888


Q ss_pred             CcccccCC
Q 039778          451 NNIAGSLP  458 (459)
Q Consensus       451 ~~~~~~~p  458 (459)
                      |.+.+.+|
T Consensus       426 ~~~~~~~~  433 (454)
T 1jl5_A          426 ERVVDPYE  433 (454)
T ss_dssp             --------
T ss_pred             cccCCccc
Confidence            88887665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.5e-32  Score=250.18  Aligned_cols=309  Identities=22%  Similarity=0.265  Sum_probs=186.3

Q ss_pred             CccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcE
Q 039778           47 MNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRF  126 (459)
Q Consensus        47 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  126 (459)
                      +++++.|+++++.+.......+..+++|++|+++++.+. .++...+..+++|++|++++|.+.... +..+..+++|++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCC-HHHhcCCCCCCE
Confidence            456666666666665444444566666666666666554 333345556666666666666555542 344555555555


Q ss_pred             EecCCCccCCCCcccc-cccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEc
Q 039778          127 LDLSGLRIRDGSKVLH-SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHV  205 (459)
Q Consensus       127 L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  205 (459)
                      |++++|.+..   ++. .+..+++|++|++++|.+                          .+..+..+..+++|++|++
T Consensus       122 L~L~~n~l~~---l~~~~~~~l~~L~~L~L~~n~l--------------------------~~~~~~~~~~l~~L~~L~l  172 (390)
T 3o6n_A          122 LVLERNDLSS---LPRGIFHNTPKLTTLSMSNNNL--------------------------ERIEDDTFQATTSLQNLQL  172 (390)
T ss_dssp             EECCSSCCCC---CCTTTTTTCTTCCEEECCSSCC--------------------------CBCCTTTTSSCTTCCEEEC
T ss_pred             EECCCCccCc---CCHHHhcCCCCCcEEECCCCcc--------------------------CccChhhccCCCCCCEEEC
Confidence            5555555543   222 234455555555555544                          4434444444555555555


Q ss_pred             CCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCcccc
Q 039778          206 PDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQG  285 (459)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  285 (459)
                      +++.+.+ +   .+..+++|+.+++++|.+..                             ....++|++|++++|.+. 
T Consensus       173 ~~n~l~~-~---~~~~l~~L~~L~l~~n~l~~-----------------------------~~~~~~L~~L~l~~n~l~-  218 (390)
T 3o6n_A          173 SSNRLTH-V---DLSLIPSLFHANVSYNLLST-----------------------------LAIPIAVEELDASHNSIN-  218 (390)
T ss_dssp             CSSCCSB-C---CGGGCTTCSEEECCSSCCSE-----------------------------EECCSSCSEEECCSSCCC-
T ss_pred             CCCcCCc-c---ccccccccceeecccccccc-----------------------------cCCCCcceEEECCCCeee-
Confidence            5554441 1   23444555555555543321                             011234666666666655 


Q ss_pred             ccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccccccccc
Q 039778          286 HIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK  365 (459)
Q Consensus       286 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  365 (459)
                      .++..   ..++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+ ++...+..+++|++|++++|++.+ .+..+
T Consensus       219 ~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~  291 (390)
T 3o6n_A          219 VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLVA-LNLYG  291 (390)
T ss_dssp             EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-EESGGGTTCSSCCEEECCSSCCCE-EECSS
T ss_pred             ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC-cChhHccccccCCEEECCCCcCcc-cCccc
Confidence            23322   146778888888877643  567778888888888888874 433444558888888888888774 34444


Q ss_pred             ccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccC
Q 039778          366 NNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG  431 (459)
Q Consensus       366 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  431 (459)
                      ..+++|++|++++|++. ..+..+..+++|++|++++|++. .++  +..+++|+.|++++|++.+
T Consensus       292 ~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccc
Confidence            66788888888888777 45566777788888888888877 333  5567788888888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.8e-32  Score=251.54  Aligned_cols=344  Identities=19%  Similarity=0.173  Sum_probs=210.7

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccC
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMA   81 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   81 (459)
                      ++|++|+++++.+++. + .+..+++|++|++++|.+.+. .+..+++|++|++++|.++..   .++++++|++|++++
T Consensus        42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDT  115 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCC
Confidence            5677777777777754 2 566777777777777776664 377777777777777777643   267777777777777


Q ss_pred             CcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccc
Q 039778           82 TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA  161 (459)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (459)
                      |.+.+ +   .+..+++|++|++++|.+..+    .+..+++|++|++++|.....  +  .+..+++|+.|++++|.+.
T Consensus       116 N~l~~-l---~~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n~~~~~--~--~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          116 NKLTK-L---DVSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITK--L--DVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             SCCSC-C---CCTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECTTCSCCCC--C--CCTTCTTCCEEECCSSCCC
T ss_pred             CcCCe-e---cCCCCCcCCEEECCCCcccee----ccccCCcCCEEECCCCCcccc--c--ccccCCcCCEEECCCCccc
Confidence            76653 2   266777777777777777664    256677777777777743322  2  3566777777777777765


Q ss_pred             ccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccc
Q 039778          162 KTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISL  241 (459)
Q Consensus       162 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  241 (459)
                      ...     +..+++|++|++++|.+.+.   .+..+++|++|++++|.+.+ ++   +..+++|+.|++++|.+....  
T Consensus       184 ~l~-----l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~--  249 (457)
T 3bz5_A          184 ELD-----VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD--  249 (457)
T ss_dssp             CCC-----CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--
T ss_pred             eec-----cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC--
Confidence            532     55667777777777776654   25667777777777777763 32   566777777777777655211  


Q ss_pred             ccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCC
Q 039778          242 EPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNS  321 (459)
Q Consensus       242 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~  321 (459)
                                               ...+++|+.|+++.+               +|+.+++++|.+....+  +..+++
T Consensus       250 -------------------------~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~  287 (457)
T 3bz5_A          250 -------------------------VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRK  287 (457)
T ss_dssp             -------------------------CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTT
T ss_pred             -------------------------HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--cccccc
Confidence                                     112233333333321               22233333333222111  223344


Q ss_pred             CcEEEccCCccccccchh-------HHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCC
Q 039778          322 LIYLDLSNNQLTGEIPEH-------LAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSS  394 (459)
Q Consensus       322 L~~L~l~~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  394 (459)
                      |+.|++++|...+.++..       .+.++++|++|++++|++++.   .+..+++|++|++++|.+.+        ++.
T Consensus       288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~  356 (457)
T 3bz5_A          288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSS  356 (457)
T ss_dssp             CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTT
T ss_pred             CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccc
Confidence            444444444332222211       123456777777777777753   26667777777777777663        245


Q ss_pred             CcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCch
Q 039778          395 LQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS  435 (459)
Q Consensus       395 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  435 (459)
                      |+.|.+.+|.+.+.     ..+.+|..+++++|++++.+|.
T Consensus       357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             cccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence            66667777766543     2445667777777777766663

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=5.3e-31  Score=255.93  Aligned_cols=310  Identities=21%  Similarity=0.255  Sum_probs=180.4

Q ss_pred             CccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcE
Q 039778           47 MNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRF  126 (459)
Q Consensus        47 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  126 (459)
                      +++++.++++++.+....+..+..+++|++|+++++.+. .++...+..+++|++|++++|.+.... +..++       
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~-------  120 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQ-------  120 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCC-TTTTT-------
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCC-HHHHc-------
Confidence            345555555555554333334455555555555555444 233334444555555555555444432 23344       


Q ss_pred             EecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcC
Q 039778          127 LDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVP  206 (459)
Q Consensus       127 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  206 (459)
                                         .+++|+.|++++|.+....+.  .+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       121 -------------------~l~~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          121 -------------------NVPLLTVLVLERNDLSSLPRG--IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             -------------------TCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             -------------------CCCCCCEEEeeCCCCCCCCHH--HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence                               444444444444444332221  23444555555555555555555555556666666666


Q ss_pred             CCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccc
Q 039778          207 DNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGH  286 (459)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  286 (459)
                      +|.+.+ +   .+..+++|+.+++++|.+..                             .....+|+.|++++|.+. .
T Consensus       180 ~N~l~~-~---~~~~l~~L~~L~l~~n~l~~-----------------------------l~~~~~L~~L~ls~n~l~-~  225 (597)
T 3oja_B          180 SNRLTH-V---DLSLIPSLFHANVSYNLLST-----------------------------LAIPIAVEELDASHNSIN-V  225 (597)
T ss_dssp             TSCCSB-C---CGGGCTTCSEEECCSSCCSE-----------------------------EECCTTCSEEECCSSCCC-E
T ss_pred             CCCCCC-c---ChhhhhhhhhhhcccCcccc-----------------------------ccCCchhheeeccCCccc-c
Confidence            665542 1   23445566666666554331                             011235666666666655 2


Q ss_pred             cchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccc
Q 039778          287 IPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKN  366 (459)
Q Consensus       287 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~  366 (459)
                      ++...   .++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++ .+..+.
T Consensus       226 ~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~  298 (597)
T 3oja_B          226 VRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA-LNLYGQ  298 (597)
T ss_dssp             EECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECTTSCCCE-EECSSS
T ss_pred             ccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH-HhcCccCCCEEECCCCCCCC-CCcccc
Confidence            33221   35777888888777643  5677778888888888888744343 34457888888888888775 344456


Q ss_pred             cccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccC
Q 039778          367 NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG  431 (459)
Q Consensus       367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  431 (459)
                      .+++|++|++++|.+. .+|..+..+++|+.|++++|.+.. ++  +..+++|+.|++++|++.+
T Consensus       299 ~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred             cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCC
Confidence            6778888888888777 456667777888888888888763 33  4566788888888887764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=7.5e-31  Score=242.04  Aligned_cols=309  Identities=19%  Similarity=0.201  Sum_probs=241.9

Q ss_pred             CccccEEEeccccccCCc--ccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778           25 LSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL  102 (459)
Q Consensus        25 ~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  102 (459)
                      ++++++|+++++.+...+  .+..+++|++|++++|.+....+..+..+++|++|++++|.+. ..+...+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEE
Confidence            589999999999877633  3788999999999999998777789999999999999999987 5555678999999999


Q ss_pred             ECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcc
Q 039778          103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYID  182 (459)
Q Consensus       103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  182 (459)
                      ++++|.+..+. +..+..+++|++|++++|.+...  .+..+..+++|++|++++|.+...     .+..+++|+.|+++
T Consensus       123 ~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~L~~L~l~  194 (390)
T 3o6n_A          123 VLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVS  194 (390)
T ss_dssp             ECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBC--CTTTTSSCTTCCEEECCSSCCSBC-----CGGGCTTCSEEECC
T ss_pred             ECCCCccCcCC-HHHhcCCCCCcEEECCCCccCcc--ChhhccCCCCCCEEECCCCcCCcc-----ccccccccceeecc
Confidence            99999998763 34468999999999999988764  456688899999999999887543     24456677777777


Q ss_pred             ccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCC
Q 039778          183 RNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGP  262 (459)
Q Consensus       183 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  262 (459)
                      +|.+..     +...+.|++|+++++.+.. ++   ..                                          
T Consensus       195 ~n~l~~-----~~~~~~L~~L~l~~n~l~~-~~---~~------------------------------------------  223 (390)
T 3o6n_A          195 YNLLST-----LAIPIAVEELDASHNSINV-VR---GP------------------------------------------  223 (390)
T ss_dssp             SSCCSE-----EECCSSCSEEECCSSCCCE-EE---CC------------------------------------------
T ss_pred             cccccc-----cCCCCcceEEECCCCeeee-cc---cc------------------------------------------
Confidence            765542     1223456666666655431 10   01                                          


Q ss_pred             cccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHh
Q 039778          263 FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM  342 (459)
Q Consensus       263 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  342 (459)
                            ..++|++|++++|.+.+.  .. ...+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .++... .
T Consensus       224 ------~~~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~  292 (390)
T 3o6n_A          224 ------VNVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG-Q  292 (390)
T ss_dssp             ------CCSSCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSS-S
T ss_pred             ------ccccccEEECCCCCCccc--HH-HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCccc-C
Confidence                  124566666666666532  22 334899999999999999877888999999999999999998 555543 4


Q ss_pred             cccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCC
Q 039778          343 GCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGS  408 (459)
Q Consensus       343 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  408 (459)
                      .+++|++|++++|++. ..+..+..+++|++|++++|++... +  +..+++|++|++++|++...
T Consensus       293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            5899999999999998 4556678899999999999998854 2  66788999999999998743

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-33  Score=266.92  Aligned_cols=360  Identities=18%  Similarity=0.132  Sum_probs=179.9

Q ss_pred             CCCcEEEccCCcccccchhh-hcCCccccEEEeccccccCC------cccccCccCceEEcCCCCCCcccccccc-cCC-
Q 039778            2 SNLKFLDLSHNSFNNSVLSS-LAGLSSLKNLSLAYNRLEGS------INIEGMNMLESLDLSGNKFNSSILSSLT-ALS-   72 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~-   72 (459)
                      ++|++|+++++.+++..+.. +..+++|++|++++|.+.+.      ..+..+++|++|++++|.+.+.....+. .++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            56788888888877655554 66778888888888876542      2356677888888888777654443333 344 


Q ss_pred             ---CCcEEEccCCcceee---eccccccCCCCCcEEECcccccCCccCcc---c-ccCCCCCcEEecCCCccCCCC--cc
Q 039778           73 ---SLRKLNLMATGFKGT---FDVQELDSLSNLEELDMSDNEIDNLVVPK---D-YRGLRKLRFLDLSGLRIRDGS--KV  140 (459)
Q Consensus        73 ---~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~-~~~~~~L~~L~l~~~~~~~~~--~~  140 (459)
                         +|++|++++|.+...   .....+..+++|++|++++|.+.+..+..   . ....++|++|++++|.+....  .+
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               577777777765521   11234566667777777666654332110   0 112345666666555544321  12


Q ss_pred             cccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhcc-----CCCCCcEEEcCCCcCcCcC-
Q 039778          141 LHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLA-----NLTSLRVLHVPDNQLTGNL-  214 (459)
Q Consensus       141 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~-  214 (459)
                      +..+..+++|++|++++|.+                          .+..+..+.     ..++|++|++++|.+.+.. 
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i--------------------------~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  216 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDI--------------------------NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC  216 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBC--------------------------HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred             HHHHhhCCCCCEEECcCCCc--------------------------chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence            23333445555555555443                          322221111     1334555555555443210 


Q ss_pred             --CCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccc----cc
Q 039778          215 --SSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGH----IP  288 (459)
Q Consensus       215 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~  288 (459)
                        ....+..+++|+.|++++|.+...... .+.                  ......+++|++|++++|.+++.    ++
T Consensus       217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-~l~------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  277 (461)
T 1z7x_W          217 RDLCGIVASKASLRELALGSNKLGDVGMA-ELC------------------PGLLHPSSRLRTLWIWECGITAKGCGDLC  277 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHH-HHH------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             HHHHHHHHhCCCccEEeccCCcCChHHHH-HHH------------------HHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence              012233444555555554433211000 000                  00011235566666666655532    22


Q ss_pred             hhhhhcCCCccEEEeecCcCCCCCCCccc-----CCCCCcEEEccCCccccccch---hHHhcccccceeeccccccccc
Q 039778          289 VEIGKVLPNLGFLSITFNAFNGSIPSSFG-----DMNSLIYLDLSNNQLTGEIPE---HLAMGCFNLEYLLLSNNSLQGQ  360 (459)
Q Consensus       289 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~i~~~  360 (459)
                      ..+. .+++|+.|++++|.+.+.....+.     ..++|+.|++++|.+++....   ..+..+++|++|++++|.+++.
T Consensus       278 ~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          278 RVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             HHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            2222 256666666666655432211111     124666666666665533211   1122346666666666665543


Q ss_pred             ccccccc-----ccCCceEEccCCcccC----CCcccccccCCCcEEEcccccccC
Q 039778          361 LFSKKNN-----LTKLKRLNLDGNHFIG----DIPESLSNCSSLQGLYISDNDITG  407 (459)
Q Consensus       361 ~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~  407 (459)
                      .+..+..     .++|++|++++|.+.+    .++.++..+++|++|++++|++.+
T Consensus       357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            3332221     4466666666666553    334445555666666666665553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.4e-29  Score=246.02  Aligned_cols=307  Identities=19%  Similarity=0.191  Sum_probs=216.1

Q ss_pred             CccccEEEeccccccCCc--ccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778           25 LSSLKNLSLAYNRLEGSI--NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL  102 (459)
Q Consensus        25 ~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  102 (459)
                      +++++.++++++.+...+  .+..+++|++|++++|.+....+..|..+++|++|++++|.+. ..+...+..+++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEE
Confidence            567888888888766532  3677888888888888887666678888888888888888876 4555567888888888


Q ss_pred             ECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcc
Q 039778          103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYID  182 (459)
Q Consensus       103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  182 (459)
                      ++++|.+..+. +..+..+++|++|++++|.+...  .+..+..+++|+.|++++|.+...     .+..+++|+.|+++
T Consensus       129 ~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~l~~L~~L~l~  200 (597)
T 3oja_B          129 VLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVS  200 (597)
T ss_dssp             ECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBC--CTTTTTTCTTCCEEECTTSCCSBC-----CGGGCTTCSEEECC
T ss_pred             EeeCCCCCCCC-HHHhccCCCCCEEEeeCCcCCCC--ChhhhhcCCcCcEEECcCCCCCCc-----Chhhhhhhhhhhcc
Confidence            88888887663 34467888888888888887664  555678888888888888887653     24557788888888


Q ss_pred             ccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCC
Q 039778          183 RNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGP  262 (459)
Q Consensus       183 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  262 (459)
                      +|.+.+     +...+.|++|++++|.+.. ++.   ...++|+.|++++|.+...                        
T Consensus       201 ~n~l~~-----l~~~~~L~~L~ls~n~l~~-~~~---~~~~~L~~L~L~~n~l~~~------------------------  247 (597)
T 3oja_B          201 YNLLST-----LAIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNNLTDT------------------------  247 (597)
T ss_dssp             SSCCSE-----EECCTTCSEEECCSSCCCE-EEC---SCCSCCCEEECCSSCCCCC------------------------
T ss_pred             cCcccc-----ccCCchhheeeccCCcccc-ccc---ccCCCCCEEECCCCCCCCC------------------------
Confidence            886653     2345678889988887752 211   2235788888887765421                        


Q ss_pred             cccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHh
Q 039778          263 FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM  342 (459)
Q Consensus       263 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  342 (459)
                        ..+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+... +..+..+++|+.|++++|.+. .+|..+ .
T Consensus       248 --~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~  321 (597)
T 3oja_B          248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQ-P  321 (597)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGH-H
T ss_pred             --hhhccCCCCCEEECCCCccCCCCHHHhcC-ccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCccc-c
Confidence              12234566777777777776554544443 77777777777777642 344455677777777777776 566554 3


Q ss_pred             cccccceeeccccccccccccccccccCCceEEccCCccc
Q 039778          343 GCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFI  382 (459)
Q Consensus       343 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~  382 (459)
                      .+++|++|++++|.+....   +..+++|++|++++|++.
T Consensus       322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred             cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence            4777777777777776432   455677777777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.8e-33  Score=263.81  Aligned_cols=386  Identities=19%  Similarity=0.163  Sum_probs=242.3

Q ss_pred             cCceEEcCCCCCCcccccc-cccCCCCcEEEccCCcceeee---ccccccCCCCCcEEECcccccCCccCcccccCCC--
Q 039778           49 MLESLDLSGNKFNSSILSS-LTALSSLRKLNLMATGFKGTF---DVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLR--  122 (459)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--  122 (459)
                      +|++|+++++++++..... +..+++|++|++++|.+....   -...+..+++|++|++++|.+.+..+......++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            4444555544444332222 444455555555554433110   0113344455555555555544322112222233  


Q ss_pred             --CCcEEecCCCccCCCC--cccccccCCCcccEEEccCCcccccccc--ccc-ccCcccccEEEcccccccccc----c
Q 039778          123 --KLRFLDLSGLRIRDGS--KVLHSIGSFPSLKTLYLKSNNFAKTVTT--TQG-LCELVHLQDLYIDRNDFIGSL----P  191 (459)
Q Consensus       123 --~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~~~~----~  191 (459)
                        +|++|++++|.+.+..  .++..+..+++|++|++++|.+......  ... ....++|++|++++|.+.+..    +
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              4666666666554321  2455666777777777777765432111  001 122456888888888776533    4


Q ss_pred             hhccCCCCCcEEEcCCCcCcCcCCCCcc-----cCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccC
Q 039778          192 WCLANLTSLRVLHVPDNQLTGNLSSSPL-----MHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLP  266 (459)
Q Consensus       192 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  266 (459)
                      ..+..+++|++|++++|.+.+.. ...+     ...++|+.|++++|.+...... .+                   ...
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l-------------------~~~  222 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAG-VRVLCQGLKDSPCQLEALKLESCGVTSDNCR-DL-------------------CGI  222 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHH-HHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-HH-------------------HHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHH-HHHHHHHHhcCCCCceEEEccCCCCcHHHHH-HH-------------------HHH
Confidence            55667899999999999876322 1112     1356999999999876522100 00                   112


Q ss_pred             cCCCCCccEEEeccCccccccch----hhhhcCCCccEEEeecCcCCCC----CCCcccCCCCCcEEEccCCccccccch
Q 039778          267 TRSRKNIIALDISYNKLQGHIPV----EIGKVLPNLGFLSITFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPE  338 (459)
Q Consensus       267 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~  338 (459)
                      +..+++|++|++++|.+.+....    .+...+++|+.|++++|.++..    .+..+..+++|++|++++|.+.+..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            33568899999999988754332    2222478999999999988754    345566789999999999998755444


Q ss_pred             hHHhc----ccccceeeccccccccc----cccccccccCCceEEccCCcccCCCcccccc-----cCCCcEEEcccccc
Q 039778          339 HLAMG----CFNLEYLLLSNNSLQGQ----LFSKKNNLTKLKRLNLDGNHFIGDIPESLSN-----CSSLQGLYISDNDI  405 (459)
Q Consensus       339 ~~~~~----~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~  405 (459)
                      .+...    .++|++|++++|.+++.    .+..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            44332    36999999999998865    3455667799999999999987665544432     67999999999999


Q ss_pred             cC----CCcccccCcccccEEEcCCCcccCCCchh----hc-CCCcccEEeccCCcccc
Q 039778          406 TG----SIPTWIGNISFLDAIIMPDNHLEGPIPSE----FC-QLDYLEILDLSKNNIAG  455 (459)
Q Consensus       406 ~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~-~~~~L~~L~l~~~~~~~  455 (459)
                      .+    .++..+..+++|+.|++++|++.+.....    +. ...+|+.|.+.++.+..
T Consensus       383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            86    67778888999999999999987542222    21 23467777777776553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=5.3e-32  Score=264.17  Aligned_cols=429  Identities=12%  Similarity=0.045  Sum_probs=250.5

Q ss_pred             cchhhhcCCccccEEEeccccccC--------Ccc---------cccCccCceEEcCCCCCCccccccccc-CCC-CcEE
Q 039778           17 SVLSSLAGLSSLKNLSLAYNRLEG--------SIN---------IEGMNMLESLDLSGNKFNSSILSSLTA-LSS-LRKL   77 (459)
Q Consensus        17 ~~~~~~~~~~~L~~L~l~~~~~~~--------~~~---------~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L   77 (459)
                      .....+.++++|++|+++++....        ...         ...+++|++|++++|.+++.....+.. +++ |++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            334455667778888887653211        000         126778888888888776666655654 444 8888


Q ss_pred             EccCCcceeeeccc-cccCCCCCcEEECcccccCCcc---CcccccCCCCCcEEecCCCccCCC--CcccccccCCCccc
Q 039778           78 NLMATGFKGTFDVQ-ELDSLSNLEELDMSDNEIDNLV---VPKDYRGLRKLRFLDLSGLRIRDG--SKVLHSIGSFPSLK  151 (459)
Q Consensus        78 ~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~  151 (459)
                      ++.+|......... ....+++|++|++++|.+.+..   ++.....+++|++|+++++.+...  ..++..+.++++|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            88777532111111 1235788888888888765542   123455677888888887776521  23444556778888


Q ss_pred             EEEccCCcccccccccccccCcccccEEEccccccc---cccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEE
Q 039778          152 TLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFI---GSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVL  228 (459)
Q Consensus       152 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  228 (459)
                      +|++++|.+....   ..+..+++|++|+++.....   ...+..+..+++|+.++++++... .+ +..+..+++|+.|
T Consensus       224 ~L~L~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l-~~~~~~~~~L~~L  298 (592)
T 3ogk_B          224 SVKVGDFEILELV---GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EM-PILFPFAAQIRKL  298 (592)
T ss_dssp             EEECSSCBGGGGH---HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TG-GGGGGGGGGCCEE
T ss_pred             EEeccCccHHHHH---HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HH-HHHHhhcCCCcEE
Confidence            8888887665432   24666777888887653221   122334556677777777764321 22 3455667778888


Q ss_pred             EeecceeeeecccccccccCCceeeecCccc-cCCcccCcCCCCCccEEEecc-----------CccccccchhhhhcCC
Q 039778          229 LLSNNHFQIPISLEPFFNYSKLKIFHANNSL-SGPFRLPTRSRKNIIALDISY-----------NKLQGHIPVEIGKVLP  296 (459)
Q Consensus       229 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~~~~~~~~~  296 (459)
                      ++++|.+........+..+++|+.+...+.. ..........+++|++|+++.           +.+++.....+...++
T Consensus       299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  378 (592)
T 3ogk_B          299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ  378 (592)
T ss_dssp             EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred             ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence            8877764432222223444555554432111 111112224567788888873           3444333333444577


Q ss_pred             CccEEEeecCcCCCCCCCcccC-CCCCcEEEcc----CCccccc----cchhHHhcccccceeeccccc--ccccccccc
Q 039778          297 NLGFLSITFNAFNGSIPSSFGD-MNSLIYLDLS----NNQLTGE----IPEHLAMGCFNLEYLLLSNNS--LQGQLFSKK  365 (459)
Q Consensus       297 ~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~----~~~~~~~~~~~L~~L~l~~~~--i~~~~~~~~  365 (459)
                      +|+.|++..+.+++.....+.. +++|+.|++.    .+.+++.    ....++.++++|++|++++|.  +++..+..+
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~  458 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI  458 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence            8888888777666544444443 6778888875    3455531    122334557788888886543  444433333


Q ss_pred             c-cccCCceEEccCCcccCCC-cccccccCCCcEEEcccccccCCC-cccccCcccccEEEcCCCcccCCCchhhc-CCC
Q 039778          366 N-NLTKLKRLNLDGNHFIGDI-PESLSNCSSLQGLYISDNDITGSI-PTWIGNISFLDAIIMPDNHLEGPIPSEFC-QLD  441 (459)
Q Consensus       366 ~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~  441 (459)
                      . .+++|++|++++|++++.. +..+..+++|++|++++|++++.. +.....+++|+.|+|++|++++.....+. .+|
T Consensus       459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p  538 (592)
T 3ogk_B          459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARP  538 (592)
T ss_dssp             HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCT
T ss_pred             HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCC
Confidence            3 3677888888887766432 333456777888888888765442 33344677888888888887755444343 556


Q ss_pred             cccEEeccC
Q 039778          442 YLEILDLSK  450 (459)
Q Consensus       442 ~L~~L~l~~  450 (459)
                      .+....+..
T Consensus       539 ~l~~~~~~~  547 (592)
T 3ogk_B          539 YWNIELIPS  547 (592)
T ss_dssp             TEEEEEECC
T ss_pred             CcEEEEecC
Confidence            665554443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=2.4e-31  Score=259.50  Aligned_cols=422  Identities=15%  Similarity=0.106  Sum_probs=275.8

Q ss_pred             CCCCcEEEccCCcc-cc--------------cchhhhcCCccccEEEeccccccCC--ccccc-Ccc-CceEEcCCCC-C
Q 039778            1 LSNLKFLDLSHNSF-NN--------------SVLSSLAGLSSLKNLSLAYNRLEGS--INIEG-MNM-LESLDLSGNK-F   60 (459)
Q Consensus         1 ~~~L~~L~l~~~~~-~~--------------~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~-l~~-L~~L~l~~~~-~   60 (459)
                      +++|++|+++++.. .+              .....+..+++|++|+++++.+.+.  ..+.. +++ |++|++++|. +
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~  151 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF  151 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence            57788888877532 10              1112223678889999888866542  22333 444 8888888876 3


Q ss_pred             Cccc-ccccccCCCCcEEEccCCcceeee---ccccccCCCCCcEEECcccccCCc---cCcccccCCCCCcEEecCCCc
Q 039778           61 NSSI-LSSLTALSSLRKLNLMATGFKGTF---DVQELDSLSNLEELDMSDNEIDNL---VVPKDYRGLRKLRFLDLSGLR  133 (459)
Q Consensus        61 ~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~  133 (459)
                      +... .....+|++|++|++++|.+.+..   -......+++|++|+++++.+...   .++..+..+++|++|+++++.
T Consensus       152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            2222 223347888888888888764221   011234578888888888877632   123445678888888888877


Q ss_pred             cCCCCcccccccCCCcccEEEccCCccc-ccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcC
Q 039778          134 IRDGSKVLHSIGSFPSLKTLYLKSNNFA-KTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG  212 (459)
Q Consensus       134 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  212 (459)
                      +..   ++..+..+++|++|++++.... ........+..+++|+.+++.++. ....+..+..+++|++|++++|.+.+
T Consensus       232 ~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~  307 (592)
T 3ogk_B          232 ILE---LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLET  307 (592)
T ss_dssp             GGG---GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred             HHH---HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCH
Confidence            655   6667778888888888753221 111222345667788888887653 23455666677888888888887553


Q ss_pred             cCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc------------ccc-CCcccCcCCCCCccEEEec
Q 039778          213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN------------SLS-GPFRLPTRSRKNIIALDIS  279 (459)
Q Consensus       213 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~-~~~~~~~~~~~~L~~L~l~  279 (459)
                      ......+..+++|+.|++.++ +...........+++|+.+...+            ... .........+++|++|++.
T Consensus       308 ~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~  386 (592)
T 3ogk_B          308 EDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY  386 (592)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE
T ss_pred             HHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee
Confidence            332234567888888888733 22111112223445555554331            111 1111123458999999998


Q ss_pred             cCccccccchhhhhcCCCccEEEeec----CcCCCC-----CCCcccCCCCCcEEEccCCc--cccccchhHHhcccccc
Q 039778          280 YNKLQGHIPVEIGKVLPNLGFLSITF----NAFNGS-----IPSSFGDMNSLIYLDLSNNQ--LTGEIPEHLAMGCFNLE  348 (459)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~L~~L~L~~----~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~  348 (459)
                      .+.+++..+..+...+++|+.|++++    +.+++.     ....+.++++|+.|+++.|.  +++.....+...+++|+
T Consensus       387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~  466 (592)
T 3ogk_B          387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR  466 (592)
T ss_dssp             ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred             cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence            88888777777776799999999974    344432     12235678999999998654  67666777777799999


Q ss_pred             eeecccccccccc-ccccccccCCceEEccCCcccCCCc-ccccccCCCcEEEcccccccCCCccccc-CcccccEEEcC
Q 039778          349 YLLLSNNSLQGQL-FSKKNNLTKLKRLNLDGNHFIGDIP-ESLSNCSSLQGLYISDNDITGSIPTWIG-NISFLDAIIMP  425 (459)
Q Consensus       349 ~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~  425 (459)
                      +|++++|++++.. +..+..+++|++|++++|++++... ..+..+++|++|++++|++++.....+. .++.+....+.
T Consensus       467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~  546 (592)
T 3ogk_B          467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP  546 (592)
T ss_dssp             EEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred             EeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence            9999999988643 3445778999999999999764433 3346789999999999998866444443 56777766666


Q ss_pred             CC
Q 039778          426 DN  427 (459)
Q Consensus       426 ~~  427 (459)
                      ..
T Consensus       547 ~~  548 (592)
T 3ogk_B          547 SR  548 (592)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.3e-27  Score=215.14  Aligned_cols=153  Identities=22%  Similarity=0.273  Sum_probs=101.4

Q ss_pred             CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceE
Q 039778          295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL  374 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  374 (459)
                      +++|+.|++++|.+... +..+.  ++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus       170 l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  245 (330)
T 1xku_A          170 MKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  245 (330)
T ss_dssp             CTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             CCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence            44455555555544422 11111  56777777777776 3433344457778888888777776666667777888888


Q ss_pred             EccCCcccCCCcccccccCCCcEEEcccccccCCCcccccC------cccccEEEcCCCcccC--CCchhhcCCCcccEE
Q 039778          375 NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGN------ISFLDAIIMPDNHLEG--PIPSEFCQLDYLEIL  446 (459)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L  446 (459)
                      ++++|.+. .+|.++..+++|++|++++|++.+..+..+..      .++++.+++++|.+..  ..|..+..++.++.+
T Consensus       246 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l  324 (330)
T 1xku_A          246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  324 (330)
T ss_dssp             ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             ECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEE
Confidence            88888777 56667777888888888888887555445532      3678888999888753  456778888889999


Q ss_pred             eccCCc
Q 039778          447 DLSKNN  452 (459)
Q Consensus       447 ~l~~~~  452 (459)
                      ++++|+
T Consensus       325 ~L~~N~  330 (330)
T 1xku_A          325 QLGNYK  330 (330)
T ss_dssp             EC----
T ss_pred             EecccC
Confidence            998885

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=6.1e-28  Score=217.38  Aligned_cols=131  Identities=21%  Similarity=0.229  Sum_probs=86.7

Q ss_pred             CCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEE
Q 039778          320 NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLY  399 (459)
Q Consensus       320 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  399 (459)
                      ++|++|++++|.+. .++...+..+++|++|++++|++.+..+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus       193 ~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  270 (332)
T 2ft3_A          193 ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY  270 (332)
T ss_dssp             SSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred             CCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence            45666666666665 333333445667777777777776655556677777777777777776 5566677777777888


Q ss_pred             cccccccCCCcccccC------cccccEEEcCCCccc--CCCchhhcCCCcccEEeccCCc
Q 039778          400 ISDNDITGSIPTWIGN------ISFLDAIIMPDNHLE--GPIPSEFCQLDYLEILDLSKNN  452 (459)
Q Consensus       400 l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~  452 (459)
                      +++|++.+..+..+..      .++|+.|++++|.+.  +..|..+..+++|+.+++++|+
T Consensus       271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            8777777544444443      356788888888776  4566777788888888888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.3e-27  Score=215.08  Aligned_cols=270  Identities=18%  Similarity=0.251  Sum_probs=154.6

Q ss_pred             CCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccc
Q 039778           97 SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHL  176 (459)
Q Consensus        97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  176 (459)
                      +++++|+++++.+.... +..+..+++|++|++++|.+...  .+..+..+++|++|++++|.+......   +  .++|
T Consensus        52 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~l~~~---~--~~~L  123 (330)
T 1xku_A           52 PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKI--SPGAFAPLVKLERLYLSKNQLKELPEK---M--PKTL  123 (330)
T ss_dssp             TTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCSSCCSBCCSS---C--CTTC
T ss_pred             CCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCee--CHHHhcCCCCCCEEECCCCcCCccChh---h--cccc
Confidence            45555566555555542 23455566666666666655542  345556666666666666665433222   1  1567


Q ss_pred             cEEEccccccccccchhccCCCCCcEEEcCCCcCcC-cCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeec
Q 039778          177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG-NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHA  255 (459)
Q Consensus       177 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~  255 (459)
                      ++|++++|.+.+..+..+..+++|++|+++++.+.. ......+..+++|+.|++++|.+.                   
T Consensus       124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------  184 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-------------------  184 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-------------------
T ss_pred             cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-------------------
Confidence            777777777666666667777777777777776642 123344556666666666665433                   


Q ss_pred             CccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc
Q 039778          256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE  335 (459)
Q Consensus       256 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  335 (459)
                                                    .+|...   .++|+.|++++|.+....+..+..+++|+.|++++|.+. .
T Consensus       185 ------------------------------~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~  230 (330)
T 1xku_A          185 ------------------------------TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-A  230 (330)
T ss_dssp             ------------------------------SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-E
T ss_pred             ------------------------------cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-e
Confidence                                          122111   144555555555554444455556666666666666665 3


Q ss_pred             cchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCccccc------ccCCCcEEEcccccccC--
Q 039778          336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLS------NCSSLQGLYISDNDITG--  407 (459)
Q Consensus       336 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~--  407 (459)
                      ++...+..+++|++|++++|++. ..+..+..+++|++|++++|++.+..+..|.      ...+++.|++.+|++..  
T Consensus       231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence            33333444666677777666666 4445566667777777777776655444442      23567777777777653  


Q ss_pred             CCcccccCcccccEEEcCCCc
Q 039778          408 SIPTWIGNISFLDAIIMPDNH  428 (459)
Q Consensus       408 ~~~~~~~~~~~L~~L~l~~~~  428 (459)
                      ..|..+..+++++.++|++|+
T Consensus       310 i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          310 IQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCGGGGTTCCCGGGEEC----
T ss_pred             cCccccccccceeEEEecccC
Confidence            345566677777777777763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.96  E-value=4.3e-31  Score=257.92  Aligned_cols=136  Identities=19%  Similarity=0.177  Sum_probs=67.3

Q ss_pred             cCccCceEEcCCCCCCcccccccc-cCCCCcEEEccCCcceeeeccc-cccCCCCCcEEECcccccCCcc---CcccccC
Q 039778           46 GMNMLESLDLSGNKFNSSILSSLT-ALSSLRKLNLMATGFKGTFDVQ-ELDSLSNLEELDMSDNEIDNLV---VPKDYRG  120 (459)
Q Consensus        46 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~  120 (459)
                      .+++|++|++++|.+++.....+. .+++|++|++.+|...+..... ....+++|++|++++|.+.+..   ++.....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            456666666666666555555554 5666666666666322221111 2235666666666666654432   1122235


Q ss_pred             CCCCcEEecCCCcc-CCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccc
Q 039778          121 LRKLRFLDLSGLRI-RDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDR  183 (459)
Q Consensus       121 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  183 (459)
                      +++|++|+++++.. .....+...+.++++|++|++++|.....  ....+..+++|++|+++.
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHHHHHHCTTCSEEECSB
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHHHHhcCCcceEccccc
Confidence            55666666666540 00011222233456666666666522111  112344455666665443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2e-27  Score=213.97  Aligned_cols=290  Identities=19%  Similarity=0.200  Sum_probs=147.3

Q ss_pred             cccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcc
Q 039778           27 SLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD  106 (459)
Q Consensus        27 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  106 (459)
                      +++.++++++.+...+. .-.++|++|++++|.+....+..+.++++|++|++++|.+. .+....+..+++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCC
Confidence            45566665555443211 11245566666666555444445555666666666555554 33333555555555555555


Q ss_pred             cccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccccc
Q 039778          107 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDF  186 (459)
Q Consensus       107 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  186 (459)
                      |.+..+  +..+.  ++|++|++++|.+...  .+..+..+++|+.|++++|.+...                       
T Consensus       112 n~l~~l--~~~~~--~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~-----------------------  162 (332)
T 2ft3_A          112 NHLVEI--PPNLP--SSLVELRIHDNRIRKV--PKGVFSGLRNMNCIEMGGNPLENS-----------------------  162 (332)
T ss_dssp             SCCCSC--CSSCC--TTCCEEECCSSCCCCC--CSGGGSSCSSCCEEECCSCCCBGG-----------------------
T ss_pred             CcCCcc--Ccccc--ccCCEEECCCCccCcc--CHhHhCCCccCCEEECCCCccccC-----------------------
Confidence            555543  22222  4555555555554432  222344455555555554444221                       


Q ss_pred             ccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccC
Q 039778          187 IGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLP  266 (459)
Q Consensus       187 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  266 (459)
                       +..+..+..+ +|++|+++++.+. .++...   .++|+.|++++|.+.                              
T Consensus       163 -~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~------------------------------  206 (332)
T 2ft3_A          163 -GFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQ------------------------------  206 (332)
T ss_dssp             -GSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCC------------------------------
T ss_pred             -CCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCC------------------------------
Confidence             1333344444 5666666666554 222111   134444444444322                              


Q ss_pred             cCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccc
Q 039778          267 TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN  346 (459)
Q Consensus       267 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  346 (459)
                                         .++...+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+ ..+++
T Consensus       207 -------------------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~  265 (332)
T 2ft3_A          207 -------------------AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKL  265 (332)
T ss_dssp             -------------------CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG-GGCTT
T ss_pred             -------------------ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh-hcCcc
Confidence                               111111112445555555555555444445556666666666666665 555543 34666


Q ss_pred             cceeecccccccccccccccc------ccCCceEEccCCccc--CCCcccccccCCCcEEEccccc
Q 039778          347 LEYLLLSNNSLQGQLFSKKNN------LTKLKRLNLDGNHFI--GDIPESLSNCSSLQGLYISDND  404 (459)
Q Consensus       347 L~~L~l~~~~i~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~  404 (459)
                      |++|++++|+++...+..|..      .+.|+.+++.+|++.  ...+.++..+++|+.+++++|.
T Consensus       266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            666666666666544444432      356778888888765  4566677777888888887764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.7e-28  Score=218.51  Aligned_cols=254  Identities=27%  Similarity=0.440  Sum_probs=177.4

Q ss_pred             cccEEEcccccccc--ccchhccCCCCCcEEEcCC-CcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCce
Q 039778          175 HLQDLYIDRNDFIG--SLPWCLANLTSLRVLHVPD-NQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLK  251 (459)
Q Consensus       175 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  251 (459)
                      +++.|+++++.+.+  ..|..+..+++|++|++++ +.+.+.+ +..+..+++|+.|++++|.+.....           
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p-----------  118 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGAIP-----------  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence            34444444444444  3444444555555555552 4443222 2334455555555555544431111           


Q ss_pred             eeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCC-CCcEEEccCC
Q 039778          252 IFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMN-SLIYLDLSNN  330 (459)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-~L~~L~l~~~  330 (459)
                                   ..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..+..+..++ .|+.|++++|
T Consensus       119 -------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          119 -------------DFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             -------------GGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             -------------HHHhCCCCCCEEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence                         11233455666666666665555655544 78888888888888766777777777 8999999999


Q ss_pred             ccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCc
Q 039778          331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP  410 (459)
Q Consensus       331 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  410 (459)
                      .+.+.++..+. .++ |++|++++|.+.+..+..+..+++|++|++++|.+....+. +..+++|++|++++|.+.+.+|
T Consensus       185 ~l~~~~~~~~~-~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p  261 (313)
T 1ogq_A          185 RLTGKIPPTFA-NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             EEEEECCGGGG-GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC
T ss_pred             eeeccCChHHh-CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC
Confidence            88866666554 355 99999999999888888888899999999999998865554 7778899999999999988889


Q ss_pred             ccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778          411 TWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       411 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      ..+..+++|+.|++++|.+++.+|.. ..+++|+.+++++|+..+..|
T Consensus       262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            88999999999999999999888875 788999999999998544433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=3.1e-30  Score=251.86  Aligned_cols=419  Identities=13%  Similarity=0.113  Sum_probs=228.8

Q ss_pred             CCCCcEEEccCCc-ccccc--------------hhhhcCCccccEEEeccccccCC--cccc-cCccCceEEcCCC-CCC
Q 039778            1 LSNLKFLDLSHNS-FNNSV--------------LSSLAGLSSLKNLSLAYNRLEGS--INIE-GMNMLESLDLSGN-KFN   61 (459)
Q Consensus         1 ~~~L~~L~l~~~~-~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~~--~~~~-~l~~L~~L~l~~~-~~~   61 (459)
                      +++|++|+++++. +.+..              ...+..+++|++|+++++.+.+.  ..+. .+++|++|++++| .++
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            5789999999875 22111              12235688999999999986652  2343 6899999999999 455


Q ss_pred             cc-cccccccCCCCcEEEccCCcceeeeccccc----cCCCCCcEEECcccc--cCCccCcccccCCCCCcEEecCCCcc
Q 039778           62 SS-ILSSLTALSSLRKLNLMATGFKGTFDVQEL----DSLSNLEELDMSDNE--IDNLVVPKDYRGLRKLRFLDLSGLRI  134 (459)
Q Consensus        62 ~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~  134 (459)
                      +. ......+|++|++|++++|.+.+ .....+    ..+++|++|+++++.  +....+......+++|++|+++++..
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDD-VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEEC-CCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCC-cchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            43 33344589999999999998653 222222    367899999999886  22222223345679999999998832


Q ss_pred             CCCCcccccccCCCcccEEEccCCcccc----cccccccccCcccccEE-EccccccccccchhccCCCCCcEEEcCCCc
Q 039778          135 RDGSKVLHSIGSFPSLKTLYLKSNNFAK----TVTTTQGLCELVHLQDL-YIDRNDFIGSLPWCLANLTSLRVLHVPDNQ  209 (459)
Q Consensus       135 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  209 (459)
                      ..  .++..+..+++|+.|++..+...-    .......+..+++|+.+ .+.+... ...+..+..+++|++|++++|.
T Consensus       224 ~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~  300 (594)
T 2p1m_B          224 LE--KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYAT  300 (594)
T ss_dssp             HH--HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCC
T ss_pred             HH--HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCC
Confidence            22  266777889999999976653210    00111245677888888 3433221 2334444467889999999888


Q ss_pred             CcCcCCCCcccCCCcccEEEeecceeeeeccccc-ccccCCceeeecCc----------ccc-CCcccCcCCCCCccEEE
Q 039778          210 LTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEP-FFNYSKLKIFHANN----------SLS-GPFRLPTRSRKNIIALD  277 (459)
Q Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~----------~~~-~~~~~~~~~~~~L~~L~  277 (459)
                      +.+......+..+++|+.|++.++ +. ...... ...+++|+.+....          ... .........+++|++|.
T Consensus       301 l~~~~l~~~~~~~~~L~~L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~  378 (594)
T 2p1m_B          301 VQSYDLVKLLCQCPKLQRLWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL  378 (594)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHHHhcCCCcCEEeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence            653332334567889999999887 32 111111 11233333332210          000 00000112245555555


Q ss_pred             eccCccccccchhhhhcCCCccEEEee--c----CcCCCCC-----CCcccCCCCCcEEEccCCccccccchhHHhcccc
Q 039778          278 ISYNKLQGHIPVEIGKVLPNLGFLSIT--F----NAFNGSI-----PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN  346 (459)
Q Consensus       278 l~~~~~~~~~~~~~~~~~~~L~~L~L~--~----~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  346 (459)
                      +..+.+++.....+...+++|+.|+++  +    +.++...     ...+..+++|+.|++++ .+++.....+...+++
T Consensus       379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~  457 (594)
T 2p1m_B          379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK  457 (594)
T ss_dssp             EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred             HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence            555555444334443345556666665  2    1222110     01133445555555544 4443333333334555


Q ss_pred             cceeecccccccccccccc-ccccCCceEEccCCcccCCCcc-cccccCCCcEEEcccccccCCCcccc-cCcccccEEE
Q 039778          347 LEYLLLSNNSLQGQLFSKK-NNLTKLKRLNLDGNHFIGDIPE-SLSNCSSLQGLYISDNDITGSIPTWI-GNISFLDAII  423 (459)
Q Consensus       347 L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~  423 (459)
                      |++|++++|.+++..+..+ ..+++|++|++++|++++.... ....+++|++|++++|+++......+ ..+++++...
T Consensus       458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~  537 (594)
T 2p1m_B          458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV  537 (594)
T ss_dssp             CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE
T ss_pred             ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE
Confidence            5555555555544333333 3455555555555555322222 22334555555555555532222222 2344444444


Q ss_pred             cCC
Q 039778          424 MPD  426 (459)
Q Consensus       424 l~~  426 (459)
                      +.+
T Consensus       538 ~~~  540 (594)
T 2p1m_B          538 IDE  540 (594)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=4e-27  Score=209.58  Aligned_cols=233  Identities=23%  Similarity=0.395  Sum_probs=204.9

Q ss_pred             CCCcEEEcCCCcCcC--cCCCCcccCCCcccEEEeec-ceeeeecccccccccCCceeeecCccccCCcccCcCCCCCcc
Q 039778          198 TSLRVLHVPDNQLTG--NLSSSPLMHLTSIEVLLLSN-NHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNII  274 (459)
Q Consensus       198 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  274 (459)
                      .+++.|+++++.+.+  .+ +..+..+++|+.|++++ +.+....                        ...+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~-~~~l~~l~~L~~L~L~~~n~l~~~~------------------------p~~l~~l~~L~  104 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLYIGGINNLVGPI------------------------PPAIAKLTQLH  104 (313)
T ss_dssp             CCEEEEEEECCCCSSCEEC-CGGGGGCTTCSEEEEEEETTEESCC------------------------CGGGGGCTTCS
T ss_pred             ceEEEEECCCCCccCCccc-ChhHhCCCCCCeeeCCCCCcccccC------------------------ChhHhcCCCCC
Confidence            579999999999886  45 46788999999999994 6655221                        22345678999


Q ss_pred             EEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccc-ccceeecc
Q 039778          275 ALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF-NLEYLLLS  353 (459)
Q Consensus       275 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~  353 (459)
                      +|++++|.+.+.+|..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+++.+|..+.. ++ +|++|+++
T Consensus       105 ~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~  182 (313)
T 1ogq_A          105 YLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTIS  182 (313)
T ss_dssp             EEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECC
T ss_pred             EEECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECc
Confidence            9999999998778877665 999999999999999888899999999999999999998788877665 65 99999999


Q ss_pred             ccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCC
Q 039778          354 NNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPI  433 (459)
Q Consensus       354 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  433 (459)
                      +|.+.+..+..+..++ |++|++++|.+.+..+..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+.+
T Consensus       183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~  260 (313)
T 1ogq_A          183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECC
T ss_pred             CCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcC
Confidence            9999988888888887 99999999999988899999999999999999999855554 788899999999999999899


Q ss_pred             chhhcCCCcccEEeccCCcccccCCC
Q 039778          434 PSEFCQLDYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       434 ~~~~~~~~~L~~L~l~~~~~~~~~p~  459 (459)
                      |..+..+++|+.|++++|++++.+|+
T Consensus       261 p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          261 PQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ChHHhcCcCCCEEECcCCcccccCCC
Confidence            99999999999999999999999985

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=4.6e-26  Score=206.99  Aligned_cols=279  Identities=21%  Similarity=0.211  Sum_probs=185.6

Q ss_pred             CCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCccc
Q 039778           96 LSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVH  175 (459)
Q Consensus        96 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  175 (459)
                      |+.....+++++.+..+  |..+.  ++|++|+++++.+...  .+..+.++++|++|++++|.+....+.  .+..+++
T Consensus        30 C~~~~~c~~~~~~l~~i--P~~~~--~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~  101 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSI--PSGLT--EAVKSLDLSNNRITYI--SNSDLQRCVNLQALVLTSNGINTIEED--SFSSLGS  101 (353)
T ss_dssp             ECTTSEEECCSTTCSSC--CTTCC--TTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTSCCCEECTT--TTTTCTT
T ss_pred             CCCCeEeeCCCCCcccc--ccccc--ccCcEEECCCCcCccc--CHHHhccCCCCCEEECCCCccCccCHh--hcCCCCC
Confidence            45555566677666665  43332  4777777777776542  223567777777777777776544332  3566777


Q ss_pred             ccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCC-CcccCCCcccEEEeecceeeeecccccccccCCceeee
Q 039778          176 LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSS-SPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH  254 (459)
Q Consensus       176 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~  254 (459)
                      |++|++++|.+.+..+..+..+++|++|++++|.+. .++. ..+..+++|+.|++++|..                   
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~-------------------  161 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT-------------------  161 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSS-------------------
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcc-------------------
Confidence            777777777777655555777778888888877766 3433 4556666666666666521                   


Q ss_pred             cCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCcccc
Q 039778          255 ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTG  334 (459)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  334 (459)
                                                  +. .++...+..+++|+.|++++|.+....+..+..+++|++|++++|.+. 
T Consensus       162 ----------------------------~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-  211 (353)
T 2z80_A          162 ----------------------------FT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-  211 (353)
T ss_dssp             ----------------------------CC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-
T ss_pred             ----------------------------cc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-
Confidence                                        11 222222333677778888888777666777888889999999999886 


Q ss_pred             ccchhHHhcccccceeecccccccccccccc---ccccCCceEEccCCcccCC----CcccccccCCCcEEEcccccccC
Q 039778          335 EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK---NNLTKLKRLNLDGNHFIGD----IPESLSNCSSLQGLYISDNDITG  407 (459)
Q Consensus       335 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~  407 (459)
                      .++...+..+++|+.|++++|.+.+..+..+   ...+.++.+++.++.+.+.    +|.++..+++|++|++++|.+. 
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-  290 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-  290 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence            7777777778999999999998876544332   2345677777777765532    4455667777777777777777 


Q ss_pred             CCccc-ccCcccccEEEcCCCcccCCC
Q 039778          408 SIPTW-IGNISFLDAIIMPDNHLEGPI  433 (459)
Q Consensus       408 ~~~~~-~~~~~~L~~L~l~~~~~~~~~  433 (459)
                      .+|.. +..+++|+.|++++|++.+..
T Consensus       291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          291 SVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            45544 467777777777777777543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=9.5e-26  Score=200.76  Aligned_cols=189  Identities=20%  Similarity=0.174  Sum_probs=132.2

Q ss_pred             CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778          270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  349 (459)
Q Consensus       270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  349 (459)
                      +++|++|++++|.+.+..+......+++|+.|++++|.+....+..+..+++|++|++++|.+.+......+..+++|++
T Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence            34555666666655532222333447888888888888877777778888888888888888874333334456888888


Q ss_pred             eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcc-cccEEEcCCCc
Q 039778          350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNIS-FLDAIIMPDNH  428 (459)
Q Consensus       350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~  428 (459)
                      |++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..++ +|+.|++++|.
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            88888888877777788888888888888888776666777888888888888888877777777774 88888888888


Q ss_pred             ccCCCc-hh-hcCCCcccEEeccCCcccccCC
Q 039778          429 LEGPIP-SE-FCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       429 ~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      +.+.-. .. ..-+...+.+.+..+.+.+..|
T Consensus       260 ~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p  291 (306)
T 2z66_A          260 FACTCEHQSFLQWIKDQRQLLVEVERMECATP  291 (306)
T ss_dssp             EECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred             eecccChHHHHHHHHhhhhhhccccccccCCc
Confidence            874311 11 1122334445556666666655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.9e-25  Score=209.76  Aligned_cols=133  Identities=18%  Similarity=0.209  Sum_probs=60.8

Q ss_pred             CCCccEEEeecCc-CCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCce
Q 039778          295 LPNLGFLSITFNA-FNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR  373 (459)
Q Consensus       295 ~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  373 (459)
                      +++|+.|+++++. +.......+.++++|+.|++++|.+. .++.  +..+++|++|++++|.+.+..+..|..+++|++
T Consensus       170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  246 (452)
T 3zyi_A          170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK  246 (452)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred             CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc--ccccccccEEECcCCcCcccCcccccCccCCCE
Confidence            4555555555432 22222233444555555555555544 2322  223444555555555444444444444445555


Q ss_pred             EEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          374 LNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       374 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      |++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+|++|.+.
T Consensus       247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            555555444444444444444555555555444333333444444445555444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.2e-25  Score=208.65  Aligned_cols=136  Identities=21%  Similarity=0.202  Sum_probs=76.4

Q ss_pred             hhcCCCccEEEeecCcC-CCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccC
Q 039778          292 GKVLPNLGFLSITFNAF-NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTK  370 (459)
Q Consensus       292 ~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~  370 (459)
                      +..+++|+.|+++++.. .......|.++++|+.|++++|.++ .++.  +..+++|++|++++|.+.+..+..|..+++
T Consensus       156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  232 (440)
T 3zyj_A          156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMH  232 (440)
T ss_dssp             TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCcc
Confidence            33356666666666332 2223334556666666666666665 4442  233556666666666665555555555666


Q ss_pred             CceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          371 LKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       371 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      |++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|+|++|.+.
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            666666666655555555555566666666666665444444555566666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=7e-26  Score=201.65  Aligned_cols=284  Identities=20%  Similarity=0.226  Sum_probs=193.6

Q ss_pred             cEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEE
Q 039778          100 EELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDL  179 (459)
Q Consensus       100 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  179 (459)
                      +.++++++.+..+  |..+  .+++++|+++++.+...  -...+.++++|++|++++|.+.........+..+++|++|
T Consensus        10 ~~l~c~~~~l~~i--p~~~--~~~l~~L~L~~n~l~~i--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L   83 (306)
T 2z66_A           10 TEIRCNSKGLTSV--PTGI--PSSATRLELESNKLQSL--PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL   83 (306)
T ss_dssp             TEEECCSSCCSSC--CSCC--CTTCCEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred             CEEEcCCCCcccC--CCCC--CCCCCEEECCCCccCcc--CHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence            4677777777666  3333  25788888888877652  2234567788888888877765332212234456667777


Q ss_pred             EccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccc
Q 039778          180 YIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSL  259 (459)
Q Consensus       180 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  259 (459)
                      ++++|.+.. .+..+..+++|++|+++++.+.+......+..+++                                   
T Consensus        84 ~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-----------------------------------  127 (306)
T 2z66_A           84 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-----------------------------------  127 (306)
T ss_dssp             ECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT-----------------------------------
T ss_pred             ECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC-----------------------------------
Confidence            777766553 33345566666666666665542221133444444                                   


Q ss_pred             cCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCC-CCCCcccCCCCCcEEEccCCccccccch
Q 039778          260 SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG-SIPSSFGDMNSLIYLDLSNNQLTGEIPE  338 (459)
Q Consensus       260 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~  338 (459)
                                   |++|++++|.+.+..+.. +..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+. .++.
T Consensus       128 -------------L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~  192 (306)
T 2z66_A          128 -------------LIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP  192 (306)
T ss_dssp             -------------CCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECT
T ss_pred             -------------CCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC-CcCH
Confidence                         445555555444333333 3348999999999999875 46778899999999999999998 4544


Q ss_pred             hHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccC-CCcEEEcccccccCCCc--ccccC
Q 039778          339 HLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCS-SLQGLYISDNDITGSIP--TWIGN  415 (459)
Q Consensus       339 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~--~~~~~  415 (459)
                      ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..++ +|++|++++|++...-.  ....-
T Consensus       193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~  272 (306)
T 2z66_A          193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW  272 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred             HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence            4455699999999999999987777888999999999999999988888888884 89999999999874321  11222


Q ss_pred             cccccEEEcCCCcccCCCchhhcCC
Q 039778          416 ISFLDAIIMPDNHLEGPIPSEFCQL  440 (459)
Q Consensus       416 ~~~L~~L~l~~~~~~~~~~~~~~~~  440 (459)
                      +...+.+.+..+.+.+..|..+...
T Consensus       273 l~~~~~~~~~~~~~~C~~p~~~~g~  297 (306)
T 2z66_A          273 IKDQRQLLVEVERMECATPSDKQGM  297 (306)
T ss_dssp             HHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred             HHhhhhhhccccccccCCchhhCCc
Confidence            3445555666777777777766543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3.9e-25  Score=197.89  Aligned_cols=133  Identities=21%  Similarity=0.242  Sum_probs=85.7

Q ss_pred             CCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcE
Q 039778          318 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQG  397 (459)
Q Consensus       318 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  397 (459)
                      ++++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             cCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence            3566666666666665 555443 346666666666666663 3344666666777777666666666666666666777


Q ss_pred             EEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcc
Q 039778          398 LYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI  453 (459)
Q Consensus       398 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  453 (459)
                      |++++|++.+.+|..+..+++|+.|+|++|.+.+.+|..+.++++|+.+++..+.+
T Consensus       258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            77777666666666666667777777777766666676666777777776665544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.1e-26  Score=207.44  Aligned_cols=241  Identities=19%  Similarity=0.150  Sum_probs=176.9

Q ss_pred             cCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCc
Q 039778          171 CELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKL  250 (459)
Q Consensus       171 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  250 (459)
                      ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..   .+..+++|+.|++++|.+....           
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~l~-----------   96 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQELL-----------   96 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---EETTCTTCCEEECCSSEEEEEE-----------
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---hhhhcCCCCEEECcCCcccccc-----------
Confidence            34567777777777777666667777777888888777766322   2667777888888777665211           


Q ss_pred             eeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCC
Q 039778          251 KIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN  330 (459)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~  330 (459)
                                        ..++|++|++++|.+.+..+.    .+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus        97 ------------------~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           97 ------------------VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN  154 (317)
T ss_dssp             ------------------ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred             ------------------CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence                              125677888888777633222    2677888888888888766667777888888888888


Q ss_pred             ccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCc
Q 039778          331 QLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP  410 (459)
Q Consensus       331 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  410 (459)
                      .+.+..+..+...+++|++|++++|.+++.  .....+++|++|++++|.+.+. +..+..+++|++|++++|++. .+|
T Consensus       155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~  230 (317)
T 3o53_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIE  230 (317)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EEC
T ss_pred             CCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chh
Confidence            887545555555678888999988888754  2233478888999988888754 445778888999999988888 677


Q ss_pred             ccccCcccccEEEcCCCccc-CCCchhhcCCCcccEEeccCC
Q 039778          411 TWIGNISFLDAIIMPDNHLE-GPIPSEFCQLDYLEILDLSKN  451 (459)
Q Consensus       411 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~  451 (459)
                      ..+..+++|+.|++++|.+. +.+|..+..+++|+.+++++|
T Consensus       231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            77888888999999988887 567777788888888888733

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.9e-25  Score=196.59  Aligned_cols=156  Identities=24%  Similarity=0.272  Sum_probs=104.0

Q ss_pred             CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceE
Q 039778          295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL  374 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  374 (459)
                      +++|+.|++++|.+.......+..+++|+.|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus       128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (285)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence            566666666666666555555677777888888877776 5565555567788888888887777667777778888888


Q ss_pred             EccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhc--CCCcccEEeccCCc
Q 039778          375 NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFC--QLDYLEILDLSKNN  452 (459)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~  452 (459)
                      ++++|.+.+..+..+..+++|++|++++|++....+. ..-...++.+..+.+.+.+..|..+.  .+..++..++++|+
T Consensus       207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             eCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence            8888887766666677778888888888877633221 11123344445566666666776664  34556666666663

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=9.2e-25  Score=204.37  Aligned_cols=235  Identities=22%  Similarity=0.322  Sum_probs=203.3

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      +++++|++++|.++...+..|.++++|++|++++|.+.+  ...|.++++|++|++++|+++......|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            578999999999998888999999999999999998775  457899999999999999998777778999999999999


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN  159 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (459)
                      ++|.+. .++...+..+++|++|+++++.......+..+..+++|++|++++|.+..   ++ .+..+++|+.|++++|.
T Consensus       144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~-~~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---IP-NLTPLIKLDELDLSGNH  218 (440)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS---CC-CCTTCSSCCEEECTTSC
T ss_pred             CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc---cc-ccCCCcccCEEECCCCc
Confidence            999987 56666889999999999998654443335678899999999999998876   33 47889999999999999


Q ss_pred             ccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec
Q 039778          160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI  239 (459)
Q Consensus       160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  239 (459)
                      +....+.  .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|++..+.
T Consensus       219 l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          219 LSAIRPG--SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CCEECTT--TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             cCccChh--hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCccCCC
Confidence            8765443  5788999999999999999888888999999999999999988 566777889999999999999998777


Q ss_pred             ccccc
Q 039778          240 SLEPF  244 (459)
Q Consensus       240 ~~~~~  244 (459)
                      ...++
T Consensus       296 ~l~~l  300 (440)
T 3zyj_A          296 DILWL  300 (440)
T ss_dssp             TTHHH
T ss_pred             CchHH
Confidence            65544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.2e-24  Score=204.38  Aligned_cols=235  Identities=21%  Similarity=0.285  Sum_probs=203.1

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL   79 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   79 (459)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+  ...|.++++|++|++++|.++......|.++++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            578999999999999989999999999999999998876  457889999999999999998777777999999999999


Q ss_pred             cCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCc
Q 039778           80 MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN  159 (459)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (459)
                      ++|.+. .++...+..+++|++|+++++.......+..+..+++|++|++++|.+...    ..+..+++|+.|++++|.
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM----PNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC----CCCTTCTTCCEEECTTSC
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc----ccccccccccEEECcCCc
Confidence            999987 666668899999999999986544433356788999999999999998763    347789999999999999


Q ss_pred             ccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec
Q 039778          160 FAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI  239 (459)
Q Consensus       160 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  239 (459)
                      +....+.  .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|++..+.
T Consensus       230 l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          230 FPEIRPG--SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             CSEECGG--GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             CcccCcc--cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcCCCC
Confidence            8765443  5788999999999999999888888999999999999999987 666677888999999999999998776


Q ss_pred             ccccc
Q 039778          240 SLEPF  244 (459)
Q Consensus       240 ~~~~~  244 (459)
                      ...++
T Consensus       307 ~~~~l  311 (452)
T 3zyi_A          307 DILWL  311 (452)
T ss_dssp             TTHHH
T ss_pred             CchHH
Confidence            65543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.3e-24  Score=195.78  Aligned_cols=109  Identities=17%  Similarity=0.088  Sum_probs=51.2

Q ss_pred             CccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcc---cCCCCCcEEEccCCccccc----cchhHHhcc
Q 039778          272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSF---GDMNSLIYLDLSNNQLTGE----IPEHLAMGC  344 (459)
Q Consensus       272 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~  344 (459)
                      +|++|++++|.+. .++......+++|+.|++++|.+.......+   ...+.++.++++++.+.+.    ++.. +..+
T Consensus       199 ~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l  276 (353)
T 2z80_A          199 NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQI  276 (353)
T ss_dssp             EEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH-HHTC
T ss_pred             cCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH-Hhcc
Confidence            3444444444433 4444444446677777777776664332222   2234556666666555431    2221 2234


Q ss_pred             cccceeeccccccccccccccccccCCceEEccCCccc
Q 039778          345 FNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFI  382 (459)
Q Consensus       345 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~  382 (459)
                      ++|++|++++|+++......|..+++|++|++++|++.
T Consensus       277 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            55555555555554322222344455555555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=3.4e-25  Score=194.95  Aligned_cols=163  Identities=22%  Similarity=0.243  Sum_probs=127.9

Q ss_pred             cCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCce
Q 039778          294 VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR  373 (459)
Q Consensus       294 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  373 (459)
                      .+++|+.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++
T Consensus       103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  181 (285)
T 1ozn_A          103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (285)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence            3677888888888877666777888899999999999887 666666667889999999999888766667888899999


Q ss_pred             EEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcc
Q 039778          374 LNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI  453 (459)
Q Consensus       374 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  453 (459)
                      |++++|.+.+..+.++..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.-+. ......++.+..+.+.+
T Consensus       182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~  260 (285)
T 1ozn_A          182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEV  260 (285)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCC
T ss_pred             EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCcc
Confidence            99999998877788888889999999999998866566788889999999999988743221 12224455556667777


Q ss_pred             cccCC
Q 039778          454 AGSLP  458 (459)
Q Consensus       454 ~~~~p  458 (459)
                      .+..|
T Consensus       261 ~c~~p  265 (285)
T 1ozn_A          261 PCSLP  265 (285)
T ss_dssp             BEEES
T ss_pred             ccCCc
Confidence            76666

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.5e-24  Score=194.14  Aligned_cols=224  Identities=20%  Similarity=0.230  Sum_probs=185.1

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccC-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEcc
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLM   80 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   80 (459)
                      +++++|+++++.++ ..+..+..+++|++|++++|.+.. +..+..+++|++|++++|.+. ..+..+.++++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            57899999999988 556667779999999999998775 345888999999999999987 678889999999999999


Q ss_pred             CCcceeeecccc--------ccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccE
Q 039778           81 ATGFKGTFDVQE--------LDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKT  152 (459)
Q Consensus        81 ~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  152 (459)
                      +|...+.++...        +..+++|++|++++|.+..+  +..+..+++|++|++++|.+..   ++..+..+++|+.
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~N~l~~---l~~~l~~l~~L~~  233 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEE  233 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCCEEEEESSCCCC---CCGGGGGCTTCCE
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCCEEEccCCCCCc---CchhhccCCCCCE
Confidence            887765554311        33489999999999988855  7788999999999999998875   6667888999999


Q ss_pred             EEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeec
Q 039778          153 LYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSN  232 (459)
Q Consensus       153 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  232 (459)
                      |++++|.+.+..+.  .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+ +..+..+++++.+.+..
T Consensus       234 L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i-P~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          234 LDLRGCTALRNYPP--IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCIILVPP  310 (328)
T ss_dssp             EECTTCTTCCBCCC--CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC-CGGGGGSCTTCEEECCG
T ss_pred             EECcCCcchhhhHH--HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc-cHHHhhccCceEEeCCH
Confidence            99999887665443  5778889999999999888888888888999999999999888666 56788899999998876


Q ss_pred             cee
Q 039778          233 NHF  235 (459)
Q Consensus       233 ~~~  235 (459)
                      +.+
T Consensus       311 ~~~  313 (328)
T 4fcg_A          311 HLQ  313 (328)
T ss_dssp             GGS
T ss_pred             HHH
Confidence            543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.8e-23  Score=201.03  Aligned_cols=266  Identities=22%  Similarity=0.211  Sum_probs=165.5

Q ss_pred             CCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCccccc
Q 039778           98 NLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ  177 (459)
Q Consensus        98 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  177 (459)
                      ++++|+++++.+..+  |..+.  ++|++|++++|.+..   ++.   .+++|++|++++|.+.....      .+++|+
T Consensus        41 ~l~~L~ls~n~L~~l--p~~l~--~~L~~L~L~~N~l~~---lp~---~l~~L~~L~Ls~N~l~~lp~------~l~~L~  104 (622)
T 3g06_A           41 GNAVLNVGESGLTTL--PDCLP--AHITTLVIPDNNLTS---LPA---LPPELRTLEVSGNQLTSLPV------LPPGLL  104 (622)
T ss_dssp             CCCEEECCSSCCSCC--CSCCC--TTCSEEEECSCCCSC---CCC---CCTTCCEEEECSCCCSCCCC------CCTTCC
T ss_pred             CCcEEEecCCCcCcc--ChhhC--CCCcEEEecCCCCCC---CCC---cCCCCCEEEcCCCcCCcCCC------CCCCCC
Confidence            355555555555543  33222  455555555555543   222   34555666666555543221      345566


Q ss_pred             EEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc
Q 039778          178 DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN  257 (459)
Q Consensus       178 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  257 (459)
                      +|++++|.+.+...    .+++|++|++++|.+. .++.    .+++|+.|++++|.+...                   
T Consensus       105 ~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-------------------  156 (622)
T 3g06_A          105 ELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-------------------  156 (622)
T ss_dssp             EEEECSCCCCCCCC----CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-------------------
T ss_pred             EEECcCCcCCCCCC----CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc-------------------
Confidence            66666665544222    3456666666666554 2321    235666666666644310                   


Q ss_pred             cccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccc
Q 039778          258 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP  337 (459)
Q Consensus       258 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  337 (459)
                               ...+.+|+.|++++|.+. .+|    ..+++|+.|++++|.+.... .   ..++|+.|++.+|.++ .++
T Consensus       157 ---------~~~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~-~l~  217 (622)
T 3g06_A          157 ---------PALPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLT-SLP  217 (622)
T ss_dssp             ---------CCCCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS-SCC
T ss_pred             ---------CCccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCccc-ccC
Confidence                     012345677777777766 455    23678888888888877432 2   2367888888888887 555


Q ss_pred             hhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcc
Q 039778          338 EHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNIS  417 (459)
Q Consensus       338 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  417 (459)
                      .    .+++|+.|++++|.+++ ++   ..+++|++|++++|.+.. +|.   .+++|+.|++++|.+. .+|..+..++
T Consensus       218 ~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~  284 (622)
T 3g06_A          218 A----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS  284 (622)
T ss_dssp             C----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred             C----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence            4    25788888888888875 22   445788888888888774 444   4578888888888888 7788888888


Q ss_pred             cccEEEcCCCcccCCCchhhcC
Q 039778          418 FLDAIIMPDNHLEGPIPSEFCQ  439 (459)
Q Consensus       418 ~L~~L~l~~~~~~~~~~~~~~~  439 (459)
                      +|+.|+|++|.+.+..|..+..
T Consensus       285 ~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          285 SETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             TTCEEECCSCCCCHHHHHHHHH
T ss_pred             ccCEEEecCCCCCCcCHHHHHh
Confidence            8888888888888766665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=3.5e-25  Score=197.24  Aligned_cols=179  Identities=21%  Similarity=0.185  Sum_probs=138.9

Q ss_pred             CCccEEEeccCccccccchhhhhc----CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCcccccc--chhH-Hhc
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKV----LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEI--PEHL-AMG  343 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~-~~~  343 (459)
                      ++|++|++++|.+.+. |..+...    .++|++|++++|.+....+..+..+++|++|++++|.+.+.+  +..+ +..
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            3444444444444433 4333321    388999999999998877788999999999999999876442  2222 356


Q ss_pred             ccccceeeccccccccc---cccccccccCCceEEccCCcccCCCc-ccccccCCCcEEEcccccccCCCcccccCcccc
Q 039778          344 CFNLEYLLLSNNSLQGQ---LFSKKNNLTKLKRLNLDGNHFIGDIP-ESLSNCSSLQGLYISDNDITGSIPTWIGNISFL  419 (459)
Q Consensus       344 ~~~L~~L~l~~~~i~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  419 (459)
                      +++|++|++++|++.+.   ....+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .+|..+.  ++|
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L  276 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL  276 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEE
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCc
Confidence            89999999999998842   22344677999999999999987664 45566799999999999998 7787766  899


Q ss_pred             cEEEcCCCcccCCCchhhcCCCcccEEeccCCcccc
Q 039778          420 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG  455 (459)
Q Consensus       420 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  455 (459)
                      +.|++++|++++. |. +..+++|+.|++++|++++
T Consensus       277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          277 SVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             eEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            9999999999954 76 8899999999999999986

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=8.8e-25  Score=206.10  Aligned_cols=237  Identities=19%  Similarity=0.159  Sum_probs=181.1

Q ss_pred             cccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCcee
Q 039778          173 LVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKI  252 (459)
Q Consensus       173 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  252 (459)
                      +++|++|++++|.+.+..+..|..+++|++|++++|.+.+..   .+..+++|+.|++++|.+....             
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~l~~l~~L~~L~Ls~N~l~~l~-------------   96 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQELL-------------   96 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE---ECTTCTTCCEEECCSSEEEEEE-------------
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc---ccccCCCCCEEEecCCcCCCCC-------------
Confidence            446777777777777666667777777777777777766332   1667777888888777665211             


Q ss_pred             eecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCcc
Q 039778          253 FHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL  332 (459)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  332 (459)
                                      ..++|++|++++|.+.+..+.    .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus        97 ----------------~~~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (487)
T 3oja_A           97 ----------------VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (487)
T ss_dssp             ----------------ECTTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred             ----------------CCCCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence                            115788888888877743332    267889999999988877777788889999999999999


Q ss_pred             ccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCccc
Q 039778          333 TGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTW  412 (459)
Q Consensus       333 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  412 (459)
                      ++..+..+...+++|++|++++|.+++.  .....+++|++|++++|.+.+. +..+..+++|+.|++++|.+. .+|..
T Consensus       157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~  232 (487)
T 3oja_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKA  232 (487)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTT
T ss_pred             CCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchh
Confidence            8666666665689999999999998865  2334588999999999998854 445888899999999999988 57777


Q ss_pred             ccCcccccEEEcCCCccc-CCCchhhcCCCcccEEecc
Q 039778          413 IGNISFLDAIIMPDNHLE-GPIPSEFCQLDYLEILDLS  449 (459)
Q Consensus       413 ~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~  449 (459)
                      +..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            888899999999999887 4567778888888888876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=1.2e-22  Score=195.31  Aligned_cols=151  Identities=20%  Similarity=0.233  Sum_probs=69.3

Q ss_pred             CceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEec
Q 039778           50 LESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDL  129 (459)
Q Consensus        50 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  129 (459)
                      +++|+++++.++ ..+..+.  ++|++|++++|.+. .++.    .+++|++|++++|.+..+  +.   .+++|++|++
T Consensus        42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l--p~---~l~~L~~L~L  108 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL--PV---LPPGLLELSI  108 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC--CC---CCTTCCEEEE
T ss_pred             CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC--CC---CCCCCCEEEC
Confidence            445555555444 2232222  44555555554443 2221    345555555555555443  22   4455555555


Q ss_pred             CCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCc
Q 039778          130 SGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQ  209 (459)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  209 (459)
                      ++|.+..   ++.   .+++|+.|++++|.+.....      .+++|++|++++|.+.+. +.   .+++|+.|++++|.
T Consensus       109 s~N~l~~---l~~---~l~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~  172 (622)
T 3g06_A          109 FSNPLTH---LPA---LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQ  172 (622)
T ss_dssp             CSCCCCC---CCC---CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSC
T ss_pred             cCCcCCC---CCC---CCCCcCEEECCCCCCCcCCC------CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCC
Confidence            5555443   222   34455555555555443221      124555555555554432 11   23455556665555


Q ss_pred             CcCcCCCCcccCCCcccEEEeecce
Q 039778          210 LTGNLSSSPLMHLTSIEVLLLSNNH  234 (459)
Q Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~~~  234 (459)
                      +. .++    ..+++|+.|++++|.
T Consensus       173 l~-~l~----~~~~~L~~L~Ls~N~  192 (622)
T 3g06_A          173 LT-SLP----MLPSGLQELSVSDNQ  192 (622)
T ss_dssp             CS-CCC----CCCTTCCEEECCSSC
T ss_pred             CC-CCc----ccCCCCcEEECCCCC
Confidence            54 221    234455555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=3.4e-24  Score=191.28  Aligned_cols=238  Identities=21%  Similarity=0.188  Sum_probs=192.9

Q ss_pred             ccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeec
Q 039778          176 LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHA  255 (459)
Q Consensus       176 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~  255 (459)
                      ++..+++.+.+.......+..+++|++|++++|.+. .+.+..+..+++|+.|++++|.+.....               
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------   75 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD---------------   75 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE---------------
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh---------------
Confidence            455556666655555555666789999999999987 4545678999999999999998753221               


Q ss_pred             CccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc
Q 039778          256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE  335 (459)
Q Consensus       256 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  335 (459)
                                 +..+++|++|++++|.+.+ ++     ..++|+.|++++|.+......   .+++|+.|++++|.++ .
T Consensus        76 -----------~~~l~~L~~L~Ls~n~l~~-l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~  134 (317)
T 3o53_A           76 -----------LESLSTLRTLDLNNNYVQE-LL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-M  134 (317)
T ss_dssp             -----------ETTCTTCCEEECCSSEEEE-EE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-S
T ss_pred             -----------hhhcCCCCEEECcCCcccc-cc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-C
Confidence                       3456789999999998873 33     258999999999999865433   3578999999999998 5


Q ss_pred             cchhHHhcccccceeecccccccccccccc-ccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCccccc
Q 039778          336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKK-NNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIG  414 (459)
Q Consensus       336 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  414 (459)
                      ++...+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. + ....+++|++|++++|.+. .+|..+.
T Consensus       135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~  211 (317)
T 3o53_A          135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQ  211 (317)
T ss_dssp             GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGG
T ss_pred             ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhc
Confidence            555555679999999999999998766666 4789999999999998855 2 2335899999999999999 5666688


Q ss_pred             CcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccc
Q 039778          415 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA  454 (459)
Q Consensus       415 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  454 (459)
                      .+++|+.|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus       212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            9999999999999999 67888999999999999999998

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.3e-22  Score=175.12  Aligned_cols=185  Identities=23%  Similarity=0.254  Sum_probs=161.2

Q ss_pred             CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778          270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  349 (459)
Q Consensus       270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  349 (459)
                      .+++++|+++++.+. .++...+..+++|+.|++++|.+.......|..+++|++|++++|.+. .++...+..+++|++
T Consensus        36 ~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           36 PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAE  113 (270)
T ss_dssp             CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCE
T ss_pred             CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCE
Confidence            367999999999988 555544555899999999999998777777889999999999999998 777777778999999


Q ss_pred             eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778          350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL  429 (459)
Q Consensus       350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  429 (459)
                      |++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence            99999999988888889999999999999999877666788999999999999999966666788899999999999999


Q ss_pred             cCCCchhhcCCCcccEEeccCCccccc
Q 039778          430 EGPIPSEFCQLDYLEILDLSKNNIAGS  456 (459)
Q Consensus       430 ~~~~~~~~~~~~~L~~L~l~~~~~~~~  456 (459)
                      ....+..+..+++|+.|++++|++.+.
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          194 KRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CcCCHHHhccccCCCEEEecCCCeeCC
Confidence            965556688899999999999998765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.9e-22  Score=176.45  Aligned_cols=158  Identities=20%  Similarity=0.188  Sum_probs=89.1

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc-cchhHHhcccccce
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE-IPEHLAMGCFNLEY  349 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~  349 (459)
                      ++|++|++++|.+. .++...+..+++|+.|++++|.+.......+..+++|++|++++|.+.+. ++.. +..+++|++
T Consensus        76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~  153 (276)
T 2z62_A           76 SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEH  153 (276)
T ss_dssp             TTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCE
T ss_pred             cCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCE
Confidence            44445555555444 22222233367777777777777655555566677777777777766521 2332 334666666


Q ss_pred             eeccccccccccccccccccCCc----eEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcC
Q 039778          350 LLLSNNSLQGQLFSKKNNLTKLK----RLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP  425 (459)
Q Consensus       350 L~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  425 (459)
                      |++++|++.+..+..+..+++|+    +|++++|.+....+..+. ..+|++|++++|.+.+..+..+..+++|+.|+++
T Consensus       154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred             EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence            66666666655555555555555    566666666544333332 2356666666666664333445556666666666


Q ss_pred             CCcccC
Q 039778          426 DNHLEG  431 (459)
Q Consensus       426 ~~~~~~  431 (459)
                      +|++.+
T Consensus       233 ~N~~~c  238 (276)
T 2z62_A          233 TNPWDC  238 (276)
T ss_dssp             SSCBCC
T ss_pred             CCcccc
Confidence            666653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=3.4e-24  Score=190.79  Aligned_cols=182  Identities=19%  Similarity=0.211  Sum_probs=90.0

Q ss_pred             ccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeecccccc-------CCCCCcEEECcccccCCccCccc
Q 039778           45 EGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELD-------SLSNLEELDMSDNEIDNLVVPKD  117 (459)
Q Consensus        45 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~  117 (459)
                      ...++|+.|+++++.+  ..+..+...  |++|+++++.+........+.       .+++|++|++++|.+.... +..
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA-PPP  114 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC-CCC
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh-HHH
Confidence            3445555566665555  333333322  555555555543211111121       4556666666666655432 222


Q ss_pred             c--cCCCCCcEEecCCCccCCCCcccccccCC-----CcccEEEccCCcccccccccccccCcccccEEEccccccccc-
Q 039778          118 Y--RGLRKLRFLDLSGLRIRDGSKVLHSIGSF-----PSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGS-  189 (459)
Q Consensus       118 ~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-  189 (459)
                      +  ..+++|++|++++|.+...   +..+..+     ++|++|++++|.+....+.  .+..+++|++|++++|.+.+. 
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~  189 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE--QVRVFPALSTLDLSDNPELGER  189 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT--TCCCCSSCCEEECCSCTTCHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCCCCccchHH--HhccCCCCCEEECCCCCcCcch
Confidence            2  5566666666666655542   3333333     5666666666665443322  345566666666666654432 


Q ss_pred             -cchhc--cCCCCCcEEEcCCCcCcC--cCCCCcccCCCcccEEEeecceee
Q 039778          190 -LPWCL--ANLTSLRVLHVPDNQLTG--NLSSSPLMHLTSIEVLLLSNNHFQ  236 (459)
Q Consensus       190 -~~~~l--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~  236 (459)
                       .+..+  ..+++|++|++++|.+.+  .+....+..+++|+.|++++|.+.
T Consensus       190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  241 (312)
T 1wwl_A          190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR  241 (312)
T ss_dssp             HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred             HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence             12222  455666666666666542  111122345566666666666544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=5.6e-23  Score=179.13  Aligned_cols=209  Identities=23%  Similarity=0.233  Sum_probs=129.3

Q ss_pred             CCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccE
Q 039778          196 NLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIA  275 (459)
Q Consensus       196 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~  275 (459)
                      .+++|++|++.++.+. .  ...+..+++|+.|++++|.+....                          .+..+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~-~--~~~l~~l~~L~~L~l~~n~l~~~~--------------------------~l~~l~~L~~   89 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIK-S--VQGIQYLPNVRYLALGGNKLHDIS--------------------------ALKELTNLTY   89 (272)
T ss_dssp             HHTTCCEEECTTSCCC-C--CTTGGGCTTCCEEECTTSCCCCCG--------------------------GGTTCTTCCE
T ss_pred             cccceeeeeeCCCCcc-c--ccccccCCCCcEEECCCCCCCCch--------------------------hhcCCCCCCE
Confidence            3456666666666544 1  123455566666666655443100                          1223455666


Q ss_pred             EEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccc
Q 039778          276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN  355 (459)
Q Consensus       276 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  355 (459)
                      |++++|.+. .++...+..+++|+.|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|
T Consensus        90 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A           90 LILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN  167 (272)
T ss_dssp             EECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCC
Confidence            666666655 344433334677777777777777666666677777777777777776 555555555777777777777


Q ss_pred             ccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCch
Q 039778          356 SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPS  435 (459)
Q Consensus       356 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  435 (459)
                      ++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++..       .+++|+.++++.|.+.+.+|.
T Consensus       168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred             CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence            7776555556667777777777777776655556667777777777776552       245666666777777766776


Q ss_pred             hhcCCCc
Q 039778          436 EFCQLDY  442 (459)
Q Consensus       436 ~~~~~~~  442 (459)
                      .++.++.
T Consensus       241 ~~~~~~~  247 (272)
T 3rfs_A          241 SAGSVAP  247 (272)
T ss_dssp             TTSCBCG
T ss_pred             cccccCC
Confidence            6665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=5.6e-22  Score=173.52  Aligned_cols=223  Identities=23%  Similarity=0.255  Sum_probs=175.2

Q ss_pred             EEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcc
Q 039778            7 LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGF   84 (459)
Q Consensus         7 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   84 (459)
                      ++..+..++ ..+..+  .++|++|++++|.+.+  ...+.++++|++|++++|.+....+..+.++++|++|++++|.+
T Consensus        12 ~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            444454554 233333  2579999999998876  33688899999999999999877777899999999999999988


Q ss_pred             eeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccc
Q 039778           85 KGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTV  164 (459)
Q Consensus        85 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  164 (459)
                      . ..+...+..+++|++|++++|.+.... +..+..+++|++|++++|.+... .++..+..+++|++|++++|.+....
T Consensus        89 ~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           89 Q-SLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             C-EECTTTTTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             C-ccChhhhcCCccccEEECCCCCccccC-chhcccCCCCCEEECcCCcccee-cCchhhccCCCCCEEECCCCCCCcCC
Confidence            7 455567889999999999999988764 34688999999999999988653 25678889999999999999887654


Q ss_pred             cccccccCccccc----EEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeec
Q 039778          165 TTTQGLCELVHLQ----DLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPI  239 (459)
Q Consensus       165 ~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  239 (459)
                      ..  .+..++.|+    .|++++|.+.+..+..+. ..+|++|++++|.+. .++...+..+++|+.|++++|++.+..
T Consensus       166 ~~--~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          166 CT--DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             GG--GGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             HH--HhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccC
Confidence            32  344555555    899999998876555554 458999999999987 555667788999999999999887544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.1e-22  Score=191.92  Aligned_cols=218  Identities=22%  Similarity=0.209  Sum_probs=181.5

Q ss_pred             CCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccE
Q 039778          196 NLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIA  275 (459)
Q Consensus       196 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~  275 (459)
                      .+++|++|++++|.+. .+.+..+..+++|+.|++++|.+.....                          +..+++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------------l~~l~~L~~   84 (487)
T 3oja_A           32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--------------------------LESLSTLRT   84 (487)
T ss_dssp             TGGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--------------------------CTTCTTCCE
T ss_pred             cCCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--------------------------cccCCCCCE
Confidence            3458999999999988 4556778999999999999998763221                          345688999


Q ss_pred             EEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccc
Q 039778          276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN  355 (459)
Q Consensus       276 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  355 (459)
                      |++++|.+.+ ++.     .++|+.|++++|.+....+.   .+++|+.|++++|.+++ ++...+..+++|++|++++|
T Consensus        85 L~Ls~N~l~~-l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N  154 (487)
T 3oja_A           85 LDLNNNYVQE-LLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLN  154 (487)
T ss_dssp             EECCSSEEEE-EEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTS
T ss_pred             EEecCCcCCC-CCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCC
Confidence            9999999873 332     48999999999999865443   45789999999999984 44444456999999999999


Q ss_pred             ccccccccccc-cccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCc
Q 039778          356 SLQGQLFSKKN-NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIP  434 (459)
Q Consensus       356 ~i~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  434 (459)
                      .+++..+..+. .+++|++|++++|.+.+..  ....+++|++|++++|.+. .+|+.+..+++|+.|++++|.+. .+|
T Consensus       155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp  230 (487)
T 3oja_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE  230 (487)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EEC
T ss_pred             CCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCc-ccc
Confidence            99987777775 7899999999999988652  2345899999999999999 45566889999999999999999 578


Q ss_pred             hhhcCCCcccEEeccCCccc
Q 039778          435 SEFCQLDYLEILDLSKNNIA  454 (459)
Q Consensus       435 ~~~~~~~~L~~L~l~~~~~~  454 (459)
                      ..+..+++|+.|++++|+++
T Consensus       231 ~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          231 KALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTCCCCTTCCEEECTTCCBC
T ss_pred             hhhccCCCCCEEEcCCCCCc
Confidence            88999999999999999998

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.3e-21  Score=168.91  Aligned_cols=183  Identities=23%  Similarity=0.263  Sum_probs=101.0

Q ss_pred             CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778          270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  349 (459)
Q Consensus       270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  349 (459)
                      +++|+.|++.++.+. .++.  ...+++|+.|++++|.+.+.  ..+..+++|++|++++|.++ .++...+..+++|++
T Consensus        40 l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           40 LNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred             ccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCE
Confidence            445556666655544 2221  12255666666666655432  34555566666666666555 444444444566666


Q ss_pred             eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778          350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL  429 (459)
Q Consensus       350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  429 (459)
                      |++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            66666665554444455556666666666655544444455556666666666665544444445556666666666666


Q ss_pred             cCCCchhhcCCCcccEEeccCCcccccCC
Q 039778          430 EGPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       430 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      .+..+..+..+++|+.|++++|++.+..|
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            54444445556666666666666655554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=2.4e-21  Score=170.02  Aligned_cols=179  Identities=25%  Similarity=0.238  Sum_probs=108.3

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  350 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  350 (459)
                      +.++.|++++|.+.+ ++...+..+++|+.|++++|.+.....  ...+++|+.|++++|.+. .++..+ ..+++|++|
T Consensus        31 ~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~-~~l~~L~~L  105 (290)
T 1p9a_G           31 KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLG-QTLPALTVL  105 (290)
T ss_dssp             TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCT-TTCTTCCEE
T ss_pred             CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhh-ccCCCCCEE
Confidence            455666666666552 222223336666666666666653322  245566666666666665 555432 346666777


Q ss_pred             eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      ++++|++++..+..|..+++|++|++++|.+....+..+..+++|+.|++++|++....+..+..+++|+.|++++|.+.
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            77776666555556666667777777777666555555566666777777777666333344556667777777777666


Q ss_pred             CCCchhhcCCCcccEEeccCCcccc
Q 039778          431 GPIPSEFCQLDYLEILDLSKNNIAG  455 (459)
Q Consensus       431 ~~~~~~~~~~~~L~~L~l~~~~~~~  455 (459)
                       .+|..+...++|+.|++++|++.+
T Consensus       186 -~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          186 -TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             -ccChhhcccccCCeEEeCCCCccC
Confidence             566666666667777777666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=8.9e-21  Score=165.08  Aligned_cols=134  Identities=29%  Similarity=0.356  Sum_probs=88.7

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  350 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  350 (459)
                      ++|++|++++|.+. .++...+..+++|+.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus        85 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           85 KNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCccccee
Confidence            44444445444444 344444444677777777777777666666777777777777777776 5565555567777777


Q ss_pred             eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778          351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  406 (459)
                      ++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|++.
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            77777777655556666777777777777776555555666777777777777664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=4.5e-21  Score=165.04  Aligned_cols=181  Identities=20%  Similarity=0.262  Sum_probs=148.5

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  350 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  350 (459)
                      ...++++++++.+. .+|..+   .+.++.|+++++.+....+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEE
Confidence            35677888888777 666543   367889999999988777778888899999999999888 5665556678899999


Q ss_pred             eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      ++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+.
T Consensus        89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            99999988777777888899999999999888766666788889999999999888555557888899999999999988


Q ss_pred             CCCchhhcCCCcccEEeccCCccccc
Q 039778          431 GPIPSEFCQLDYLEILDLSKNNIAGS  456 (459)
Q Consensus       431 ~~~~~~~~~~~~L~~L~l~~~~~~~~  456 (459)
                      +..+..+..+++|+.|++++|++.+.
T Consensus       169 ~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          169 SVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            66666788889999999999998876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=2e-22  Score=182.00  Aligned_cols=257  Identities=16%  Similarity=0.149  Sum_probs=136.9

Q ss_pred             cccEEEccCCcccccccccccccCc--ccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCccc
Q 039778          149 SLKTLYLKSNNFAKTVTTTQGLCEL--VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIE  226 (459)
Q Consensus       149 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  226 (459)
                      .++.++++++.+..     ..+..+  ++++.+++.++.+.+..+. +..+++|++|++++|.+.+......+..+++|+
T Consensus        48 ~~~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCCH-----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hheeeccccccCCH-----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            36677777766531     123344  5677777777776655444 335677777777777654331234456667777


Q ss_pred             EEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccC-ccccccchhhhhcCCCccEEEeec
Q 039778          227 VLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYN-KLQGHIPVEIGKVLPNLGFLSITF  305 (459)
Q Consensus       227 ~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~  305 (459)
                      .|++++|.+.....                        ..+..+++|++|++++| .+++.........+++|+.|++++
T Consensus       122 ~L~L~~~~l~~~~~------------------------~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~  177 (336)
T 2ast_B          122 NLSLEGLRLSDPIV------------------------NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW  177 (336)
T ss_dssp             EEECTTCBCCHHHH------------------------HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred             EEeCcCcccCHHHH------------------------HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence            77776665431110                        11223466667777766 444322222233366666666666


Q ss_pred             C-cCCCC-CCCcccCCC-CCcEEEccCC--ccccccchhHHhcccccceeeccccc-cccccccccccccCCceEEccCC
Q 039778          306 N-AFNGS-IPSSFGDMN-SLIYLDLSNN--QLTGEIPEHLAMGCFNLEYLLLSNNS-LQGQLFSKKNNLTKLKRLNLDGN  379 (459)
Q Consensus       306 ~-~~~~~-~~~~~~~~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~~  379 (459)
                      | .+.+. .+..+..++ +|++|++++|  .+++......+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus       178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            6 55432 233455556 6666666666  33322222233446666666666666 45455555666666666666666


Q ss_pred             c-ccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhc
Q 039778          380 H-FIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFC  438 (459)
Q Consensus       380 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  438 (459)
                      . +.......+..+++|++|++++| +.+.....+.  .++..|++++|.+++..|..++
T Consensus       258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          258 YDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence            4 22222224555666666666666 3322211111  2344555666666655555444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=172.86  Aligned_cols=157  Identities=22%  Similarity=0.219  Sum_probs=126.2

Q ss_pred             cCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccc--cc-hhHHhcccccceeeccccccccccc--c-cccc
Q 039778          294 VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE--IP-EHLAMGCFNLEYLLLSNNSLQGQLF--S-KKNN  367 (459)
Q Consensus       294 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~-~~~~~~~~~L~~L~l~~~~i~~~~~--~-~~~~  367 (459)
                      .+++|+.|++++|.+....+..+..+++|++|++++|++.+.  ++ ......+++|++|++++|+++....  . .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            478889999999988877778888999999999999987632  22 2223468899999999999863221  1 3467


Q ss_pred             ccCCceEEccCCcccCCCccccccc---CCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCccc
Q 039778          368 LTKLKRLNLDGNHFIGDIPESLSNC---SSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE  444 (459)
Q Consensus       368 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  444 (459)
                      +++|++|++++|.+.+..|..+..+   ++|++|++++|++. .+|..+.  ++|+.|+|++|++++ +|. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCcc
Confidence            8999999999999988777666665   69999999999999 7777664  799999999999994 444 67889999


Q ss_pred             EEeccCCcccc
Q 039778          445 ILDLSKNNIAG  455 (459)
Q Consensus       445 ~L~l~~~~~~~  455 (459)
                      .|++++|++++
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            99999999985

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=7.9e-23  Score=188.01  Aligned_cols=138  Identities=19%  Similarity=0.182  Sum_probs=63.2

Q ss_pred             CCccEEEeecCcCCCCC-C---CcccCCCCCcEEEccCCcccccc----chhHHhcccccceeeccccccc----ccccc
Q 039778          296 PNLGFLSITFNAFNGSI-P---SSFGDMNSLIYLDLSNNQLTGEI----PEHLAMGCFNLEYLLLSNNSLQ----GQLFS  363 (459)
Q Consensus       296 ~~L~~L~L~~~~~~~~~-~---~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~----~~~~~  363 (459)
                      ++|+.|++++|.+.... +   ..+..+++|+.|++++|.+++..    ....+..+++|++|++++|.++    ..++.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            55555555555554221 1   23334455555555555554221    1112223455555555555553    22334


Q ss_pred             ccccccCCceEEccCCcccCC----Cccccc--ccCCCcEEEcccccccC----CCcccc-cCcccccEEEcCCCcccCC
Q 039778          364 KKNNLTKLKRLNLDGNHFIGD----IPESLS--NCSSLQGLYISDNDITG----SIPTWI-GNISFLDAIIMPDNHLEGP  432 (459)
Q Consensus       364 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~  432 (459)
                      .+..+++|++|++++|.+...    ++.++.  .+++|++|++++|.+.+    .+|..+ .++++|+.|++++|.+.+.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            444555555555555554433    122221  14555555555555553    244433 2345555555555555543


Q ss_pred             C
Q 039778          433 I  433 (459)
Q Consensus       433 ~  433 (459)
                      .
T Consensus       319 ~  319 (386)
T 2ca6_A          319 D  319 (386)
T ss_dssp             S
T ss_pred             h
Confidence            3

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=3.7e-22  Score=181.60  Aligned_cols=257  Identities=18%  Similarity=0.124  Sum_probs=151.0

Q ss_pred             EEccCCcccccccccccccCcccccEEEccccccccccc----hhccCCC-CCcEEEcCCCcCcCcCCCCcccCC-----
Q 039778          153 LYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLP----WCLANLT-SLRVLHVPDNQLTGNLSSSPLMHL-----  222 (459)
Q Consensus       153 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~-----  222 (459)
                      +.++++.+.+..+.  .+...++|++|++++|.+.+..+    ..+..++ +|++|++++|.+.+.. ...+..+     
T Consensus         3 ~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN-SDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC-HHHHHHHHHTSC
T ss_pred             cccccccchHHHHH--HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH-HHHHHHHHhccC
Confidence            45666666544332  23444558888888888777665    6666777 7888888888776332 3333332     


Q ss_pred             CcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCC-CCccEEEeccCccccccchhhhhc----CCC
Q 039778          223 TSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSR-KNIIALDISYNKLQGHIPVEIGKV----LPN  297 (459)
Q Consensus       223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~----~~~  297 (459)
                      ++|+.|++++|.+....... +                   ...+..+ ++|++|++++|.+.+..+..+...    ..+
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~-l-------------------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~  139 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDE-L-------------------VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS  139 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHH-H-------------------HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred             CCccEEECcCCcCChHHHHH-H-------------------HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence            77888888877654211110 0                   0011122 567788888877765444443322    247


Q ss_pred             ccEEEeecCcCCCCCCCc----ccCCC-CCcEEEccCCccccccchhHH---hcc-cccceeecccccccccc----ccc
Q 039778          298 LGFLSITFNAFNGSIPSS----FGDMN-SLIYLDLSNNQLTGEIPEHLA---MGC-FNLEYLLLSNNSLQGQL----FSK  364 (459)
Q Consensus       298 L~~L~L~~~~~~~~~~~~----~~~~~-~L~~L~l~~~~~~~~~~~~~~---~~~-~~L~~L~l~~~~i~~~~----~~~  364 (459)
                      |++|++++|.+.+.....    +...+ +|++|++++|.+++..+..+.   ..+ ++|++|++++|.+++..    +..
T Consensus       140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~  219 (362)
T 3goz_A          140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI  219 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence            777777777776433222    23333 777777777777644443322   223 47777777777776532    233


Q ss_pred             ccc-ccCCceEEccCCcccCCCc----ccccccCCCcEEEcccccccCC-------CcccccCcccccEEEcCCCcccCC
Q 039778          365 KNN-LTKLKRLNLDGNHFIGDIP----ESLSNCSSLQGLYISDNDITGS-------IPTWIGNISFLDAIIMPDNHLEGP  432 (459)
Q Consensus       365 ~~~-~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~  432 (459)
                      +.. .++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+.       ++..+..+++|+.|++++|.+...
T Consensus       220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            333 3477777777777765543    2234556777777777764322       223445566777777777776644

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.1e-21  Score=177.14  Aligned_cols=258  Identities=17%  Similarity=0.140  Sum_probs=164.4

Q ss_pred             CCcEEECcccccCCccCcccccCC--CCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCccc
Q 039778           98 NLEELDMSDNEIDNLVVPKDYRGL--RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVH  175 (459)
Q Consensus        98 ~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  175 (459)
                      .++.++++++.+.    +..+..+  +.++.++++++.+...   ...+..+++|++|++++|.+... .....+..+++
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~---~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~~~~  119 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQP---LAEHFSPFRVQHMDLSNSVIEVS-TLHGILSQCSK  119 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSC---CCSCCCCBCCCEEECTTCEECHH-HHHHHHTTBCC
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCcccccc---chhhccCCCCCEEEccCCCcCHH-HHHHHHhhCCC
Confidence            4677777776654    2344444  6777777777766542   22344567777777776665321 01123455666


Q ss_pred             ccEEEccccccccccchhccCCCCCcEEEcCCC-cCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeee
Q 039778          176 LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDN-QLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFH  254 (459)
Q Consensus       176 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~  254 (459)
                      |++|++++|.+.+..+..+..+++|++|++++| .+.+......+.                                  
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~----------------------------------  165 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS----------------------------------  165 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH----------------------------------
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh----------------------------------
Confidence            666666666655555555556666666666665 232111111122                                  


Q ss_pred             cCccccCCcccCcCCCCCccEEEeccC-ccccccchhhhhcCC-CccEEEeecC--cCC-CCCCCcccCCCCCcEEEccC
Q 039778          255 ANNSLSGPFRLPTRSRKNIIALDISYN-KLQGHIPVEIGKVLP-NLGFLSITFN--AFN-GSIPSSFGDMNSLIYLDLSN  329 (459)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~L~~~--~~~-~~~~~~~~~~~~L~~L~l~~  329 (459)
                                    .+++|++|++++| .+++.........++ +|+.|++++|  .+. ...+..+..+++|+.|++++
T Consensus       166 --------------~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~  231 (336)
T 2ast_B          166 --------------SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  231 (336)
T ss_dssp             --------------HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             --------------cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence                          3455666666666 555432233334488 9999999999  454 23345667889999999999


Q ss_pred             Cc-cccccchhHHhcccccceeecccc-ccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccC
Q 039778          330 NQ-LTGEIPEHLAMGCFNLEYLLLSNN-SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITG  407 (459)
Q Consensus       330 ~~-~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  407 (459)
                      |. +++..+..+ ..+++|++|++++| .+.......+..+++|++|++++| +.......+.  .+++.|++++|.+++
T Consensus       232 ~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          232 SVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTT  307 (336)
T ss_dssp             CTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCC
T ss_pred             CCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCcc
Confidence            98 765666554 45899999999999 454444456788999999999999 5433333332  246677799999998


Q ss_pred             CCcccccC
Q 039778          408 SIPTWIGN  415 (459)
Q Consensus       408 ~~~~~~~~  415 (459)
                      ..|..+..
T Consensus       308 ~~~~~~~~  315 (336)
T 2ast_B          308 IARPTIGN  315 (336)
T ss_dssp             TTCSSCSS
T ss_pred             ccCCcccc
Confidence            88876654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=1e-19  Score=159.66  Aligned_cols=207  Identities=22%  Similarity=0.256  Sum_probs=169.4

Q ss_pred             hcCCccccEEEeccccccCCc-ccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCc
Q 039778           22 LAGLSSLKNLSLAYNRLEGSI-NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLE  100 (459)
Q Consensus        22 ~~~~~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  100 (459)
                      +..++++++++++++.+...+ .+  .+++++|++++|.++...+..+..+++|++|+++++.+.. ++.  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC--CCCCCcCC
Confidence            566788999999888776532 23  3689999999999987777889999999999999998873 332  36789999


Q ss_pred             EEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEE
Q 039778          101 ELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLY  180 (459)
Q Consensus       101 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  180 (459)
                      +|++++|.+..+  +..+..+++|++|++++|.+...  .+..+..+++|+.|++++|++......  .+..+++|+.|+
T Consensus        81 ~L~Ls~N~l~~l--~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~  154 (290)
T 1p9a_G           81 TLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSL--PLGALRGLGELQELYLKGNELKTLPPG--LLTPTPKLEKLS  154 (290)
T ss_dssp             EEECCSSCCSSC--CCCTTTCTTCCEEECCSSCCCCC--CSSTTTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEE
T ss_pred             EEECCCCcCCcC--chhhccCCCCCEEECCCCcCccc--CHHHHcCCCCCCEEECCCCCCCccChh--hcccccCCCEEE
Confidence            999999999876  67788999999999999998864  446788999999999999998765543  467889999999


Q ss_pred             ccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccc
Q 039778          181 IDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISL  241 (459)
Q Consensus       181 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  241 (459)
                      +++|.+....+..+..+++|++|++++|.+. .+ +..+...++|+.+++++|++......
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i-p~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TI-PKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC-CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc-ChhhcccccCCeEEeCCCCccCcCcc
Confidence            9999998777777888999999999999987 55 34456678999999999988755443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=4.2e-20  Score=163.80  Aligned_cols=195  Identities=23%  Similarity=0.347  Sum_probs=162.6

Q ss_pred             hcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcE
Q 039778           22 LAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEE  101 (459)
Q Consensus        22 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  101 (459)
                      +..+++|++|+++++.+.+...+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.. .  ..+..+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~--~~~~~l~~L~~  111 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C--GGGTTCTTCCE
T ss_pred             HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c--hhhcCCCCCCE
Confidence            34578999999999988887788899999999999999875443  8899999999999998763 3  36888999999


Q ss_pred             EECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEc
Q 039778          102 LDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI  181 (459)
Q Consensus       102 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  181 (459)
                      |++++|.+...  + .+..+++|++|++++|.+...   +. +..+++|+.|++++|.+.....    +..+++|+.|++
T Consensus       112 L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l  180 (308)
T 1h6u_A          112 LDLTSTQITDV--T-PLAGLSNLQVLYLDLNQITNI---SP-LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKA  180 (308)
T ss_dssp             EECTTSCCCCC--G-GGTTCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEEC
T ss_pred             EECCCCCCCCc--h-hhcCCCCCCEEECCCCccCcC---cc-ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEEC
Confidence            99999998886  3 388999999999999988763   32 7789999999999998875433    678899999999


Q ss_pred             cccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeee
Q 039778          182 DRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQI  237 (459)
Q Consensus       182 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  237 (459)
                      ++|.+.+..+  +..+++|++|++++|.+.+ +.  .+..+++|+.|++++|.+..
T Consensus       181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          181 DDNKISDISP--LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CCCccCcChh--hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeeec
Confidence            9999876554  7788999999999999873 32  47889999999999998863

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=9.5e-20  Score=161.50  Aligned_cols=190  Identities=24%  Similarity=0.392  Sum_probs=143.0

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccC
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMA   81 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   81 (459)
                      ++|++|+++++.++...  .+..+++|++|++++|.+.+...+..+++|++|++++|.+...  ..+..+++|++|++++
T Consensus        41 ~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred             CCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence            56888888888877532  5777888888888888877755588888888888888887642  3677888888888888


Q ss_pred             CcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccc
Q 039778           82 TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA  161 (459)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (459)
                      |.+.. ++  .+..+++|++|++++|.+....   .+..+++|++|++++|.+.+   ++. +..+++|+.|++++|.+.
T Consensus       117 n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~---~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          117 TQITD-VT--PLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSD---LTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             SCCCC-CG--GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCC---CGG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCCC-ch--hhcCCCCCCEEECCCCccCcCc---cccCCCCccEEEccCCcCCC---Chh-hcCCCCCCEEECCCCccC
Confidence            87763 32  4777888888888888877763   27778888888888887765   333 777888888888888776


Q ss_pred             ccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCc
Q 039778          162 KTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLT  211 (459)
Q Consensus       162 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  211 (459)
                      ....    +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus       187 ~~~~----l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          187 DISP----LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCGG----GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             cChh----hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            5432    5677888888888888776543  677888888888888765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=1.5e-21  Score=179.57  Aligned_cols=237  Identities=19%  Similarity=0.201  Sum_probs=176.2

Q ss_pred             CCCCcEEEccCCcccccchhh----hcCCccccEEEeccccccC-----Ccc-------cccCccCceEEcCCCCCCc--
Q 039778            1 LSNLKFLDLSHNSFNNSVLSS----LAGLSSLKNLSLAYNRLEG-----SIN-------IEGMNMLESLDLSGNKFNS--   62 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~-----~~~-------~~~l~~L~~L~l~~~~~~~--   62 (459)
                      +++|++|++++|.+++..+..    +..+++|++|++++|.+..     +..       +..+++|++|++++|.++.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            478999999999988765544    6689999999999875432     112       3688999999999999886  


Q ss_pred             --ccccccccCCCCcEEEccCCcceeeecccc----ccCC---------CCCcEEECcccccCCccCc---ccccCCCCC
Q 039778           63 --SILSSLTALSSLRKLNLMATGFKGTFDVQE----LDSL---------SNLEELDMSDNEIDNLVVP---KDYRGLRKL  124 (459)
Q Consensus        63 --~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~~~~~~---~~~~~~~~L  124 (459)
                        ..+..+..+++|++|++++|.+.. .....    +..+         ++|++|++++|.+.....+   ..+..+++|
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGP-QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHH-HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCH-HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence              356678899999999999998752 22222    3333         8999999999998754434   466788999


Q ss_pred             cEEecCCCccCCCC---cccccccCCCcccEEEccCCccccc--ccccccccCcccccEEEccccccccc----cchhcc
Q 039778          125 RFLDLSGLRIRDGS---KVLHSIGSFPSLKTLYLKSNNFAKT--VTTTQGLCELVHLQDLYIDRNDFIGS----LPWCLA  195 (459)
Q Consensus       125 ~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~  195 (459)
                      ++|++++|.+....   ..+..+..+++|+.|++++|.+...  ......+..+++|++|++++|.+.+.    ++..+.
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            99999999876321   1223778899999999999987421  11122467788999999999988765    445553


Q ss_pred             --CCCCCcEEEcCCCcCcC----cCCCCcccCCCcccEEEeecceeeee
Q 039778          196 --NLTSLRVLHVPDNQLTG----NLSSSPLMHLTSIEVLLLSNNHFQIP  238 (459)
Q Consensus       196 --~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~  238 (459)
                        .+++|++|++++|.+.+    .++.....++++|+.|++++|.+...
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence              38999999999998875    24333235689999999999987643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=4.5e-20  Score=157.66  Aligned_cols=150  Identities=17%  Similarity=0.251  Sum_probs=77.2

Q ss_pred             CCCccEEEeec-CcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccc---eeecccc-cccccccccccccc
Q 039778          295 LPNLGFLSITF-NAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE---YLLLSNN-SLQGQLFSKKNNLT  369 (459)
Q Consensus       295 ~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~i~~~~~~~~~~~~  369 (459)
                      +++|+.|++++ +.+.......|..+++|+.|++++|.+. .+|.  +..+++|+   +|++++| .+....+..|..++
T Consensus        79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~  155 (239)
T 2xwt_C           79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC  155 (239)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred             CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchh
Confidence            34444444444 4443333334444455555555555544 2333  23344444   5555555 55544444455566


Q ss_pred             CCc-eEEccCCcccCCCcccccccCCCcEEEccccc-ccCCCcccccCc-ccccEEEcCCCcccCCCchhhcCCCcccEE
Q 039778          370 KLK-RLNLDGNHFIGDIPESLSNCSSLQGLYISDND-ITGSIPTWIGNI-SFLDAIIMPDNHLEGPIPSEFCQLDYLEIL  446 (459)
Q Consensus       370 ~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  446 (459)
                      +|+ +|++++|.+....+..+.. ++|++|++++|+ +....+..+..+ ++|+.|++++|.+. .+|..  .+++|+.|
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L  231 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKEL  231 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEE
T ss_pred             cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCcee
Confidence            666 6666666655332233333 566666666663 553334455556 66666666666666 34432  45566666


Q ss_pred             eccCC
Q 039778          447 DLSKN  451 (459)
Q Consensus       447 ~l~~~  451 (459)
                      .++++
T Consensus       232 ~l~~~  236 (239)
T 2xwt_C          232 IARNT  236 (239)
T ss_dssp             ECTTC
T ss_pred             eccCc
Confidence            66655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=4.4e-21  Score=174.48  Aligned_cols=262  Identities=20%  Similarity=0.144  Sum_probs=182.7

Q ss_pred             EecCCCccCCCCcccccccCCCcccEEEccCCcccccccc--cccccCcc-cccEEEccccccccccchhccCC-----C
Q 039778          127 LDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT--TQGLCELV-HLQDLYIDRNDFIGSLPWCLANL-----T  198 (459)
Q Consensus       127 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~  198 (459)
                      +.++.+.+.+.  ++..+...++|++|++++|.+......  ...+..++ +|++|++++|.+.+..+..+..+     +
T Consensus         3 ~~ls~n~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNP--VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCH--HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHH--HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            45677776653  555556666699999999998655431  13466777 89999999999887766666553     8


Q ss_pred             CCcEEEcCCCcCcCcCCCC----cccCC-CcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCC-CCC
Q 039778          199 SLRVLHVPDNQLTGNLSSS----PLMHL-TSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRS-RKN  272 (459)
Q Consensus       199 ~L~~L~l~~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~  272 (459)
                      +|++|++++|.+.+.. ..    .+..+ ++|+.|++++|.+...... .+.                   ..+.. +++
T Consensus        81 ~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~-------------------~~l~~~~~~  139 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFK-------------------QAFSNLPAS  139 (362)
T ss_dssp             TCCEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHH-------------------HHHTTSCTT
T ss_pred             CccEEECcCCcCChHH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHH-------------------HHHHhCCCc
Confidence            9999999999887432 22    23444 7999999999976522111 110                   01112 368


Q ss_pred             ccEEEeccCccccccchhhh---hcCC-CccEEEeecCcCCCCCCCc----ccCC-CCCcEEEccCCccccc----cchh
Q 039778          273 IIALDISYNKLQGHIPVEIG---KVLP-NLGFLSITFNAFNGSIPSS----FGDM-NSLIYLDLSNNQLTGE----IPEH  339 (459)
Q Consensus       273 L~~L~l~~~~~~~~~~~~~~---~~~~-~L~~L~L~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~  339 (459)
                      |++|++++|.+.+.....+.   ...+ +|+.|++++|.+.+..+..    +..+ ++|+.|++++|.+.+.    ++..
T Consensus       140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~  219 (362)
T 3goz_A          140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI  219 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence            99999999998864444332   1244 8999999999987665433    3444 5999999999998843    3333


Q ss_pred             HHhcccccceeeccccccccccc----cccccccCCceEEccCCcccCCCc-------ccccccCCCcEEEcccccccCC
Q 039778          340 LAMGCFNLEYLLLSNNSLQGQLF----SKKNNLTKLKRLNLDGNHFIGDIP-------ESLSNCSSLQGLYISDNDITGS  408 (459)
Q Consensus       340 ~~~~~~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~  408 (459)
                      +....++|++|++++|.+++..+    ..+..+++|++|++++|.+....+       ..+..+++|++|++++|++.+.
T Consensus       220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            33334699999999999987544    344677899999999998544332       3566778899999999998866


Q ss_pred             Ccc
Q 039778          409 IPT  411 (459)
Q Consensus       409 ~~~  411 (459)
                      .+.
T Consensus       300 ~~~  302 (362)
T 3goz_A          300 HSI  302 (362)
T ss_dssp             GCH
T ss_pred             chH
Confidence            443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=4.4e-20  Score=164.20  Aligned_cols=227  Identities=20%  Similarity=0.196  Sum_probs=169.3

Q ss_pred             CCcEEEccCCcccccchhhh---cCCccccEEEeccccccC--Cccc--ccCccCceEEcCCCCCCcccc----cccccC
Q 039778            3 NLKFLDLSHNSFNNSVLSSL---AGLSSLKNLSLAYNRLEG--SINI--EGMNMLESLDLSGNKFNSSIL----SSLTAL   71 (459)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~--~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l   71 (459)
                      .++.+.+.++.+++.....+   ..+++|++|++++|.+.+  +..+  ..+++|++|++++|.++...+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            46788888887765333222   235679999999998765  3344  789999999999999875433    344579


Q ss_pred             CCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCC---ccCcccccCCCCCcEEecCCCccCCCCcccc-cccCC
Q 039778           72 SSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDN---LVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH-SIGSF  147 (459)
Q Consensus        72 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~  147 (459)
                      ++|++|++++|.+. ..+...+..+++|++|++++|.+..   ......+..+++|++|++++|.+......+. .+..+
T Consensus       145 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            99999999999986 5555678899999999999998654   2223345788999999999998865322222 24678


Q ss_pred             CcccEEEccCCccccccc-ccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCccc
Q 039778          148 PSLKTLYLKSNNFAKTVT-TTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIE  226 (459)
Q Consensus       148 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  226 (459)
                      ++|++|++++|.+....+ ....+..+++|++|++++|.+. .+|..+.  ++|++|++++|.+.+ ++  .+..+++|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~--~~~~l~~L~  297 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-AP--QPDELPEVD  297 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CC--CTTSCCCCS
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cc--hhhhCCCcc
Confidence            999999999999877633 2222333479999999999988 4455553  799999999999883 32  257789999


Q ss_pred             EEEeecceee
Q 039778          227 VLLLSNNHFQ  236 (459)
Q Consensus       227 ~L~l~~~~~~  236 (459)
                      .|++++|++.
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            9999998765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=6e-20  Score=156.88  Aligned_cols=185  Identities=19%  Similarity=0.224  Sum_probs=155.6

Q ss_pred             CCCCccEEEeccCccccccchhhhhcCCCccEEEeecCc-CCCCCCCcccCCCCCcEEEccC-CccccccchhHHhcccc
Q 039778          269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNA-FNGSIPSSFGDMNSLIYLDLSN-NQLTGEIPEHLAMGCFN  346 (459)
Q Consensus       269 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~  346 (459)
                      ...++++|+++++.+. .++...+..+++|+.|++++|. +.......|.++++|++|++++ |.+. .++...+..+++
T Consensus        29 ~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~  106 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPL  106 (239)
T ss_dssp             CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTT
T ss_pred             CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCC
Confidence            3458999999999998 5666555569999999999997 8766777899999999999998 8888 777777778999


Q ss_pred             cceeeccccccccccccccccccCCc---eEEccCC-cccCCCcccccccCCCc-EEEcccccccCCCcccccCcccccE
Q 039778          347 LEYLLLSNNSLQGQLFSKKNNLTKLK---RLNLDGN-HFIGDIPESLSNCSSLQ-GLYISDNDITGSIPTWIGNISFLDA  421 (459)
Q Consensus       347 L~~L~l~~~~i~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~  421 (459)
                      |++|++++|++.+ .+. +..+++|+   +|++++| .+....+..|..+++|+ +|++++|++. .+|......++|+.
T Consensus       107 L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~  183 (239)
T 2xwt_C          107 LKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA  183 (239)
T ss_dssp             CCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEE
T ss_pred             CCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCE
Confidence            9999999999986 333 77888888   9999999 88876667789999999 9999999998 55554334489999


Q ss_pred             EEcCCCc-ccCCCchhhcCC-CcccEEeccCCcccccCCC
Q 039778          422 IIMPDNH-LEGPIPSEFCQL-DYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       422 L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~p~  459 (459)
                      |++++|+ +....+..+..+ ++|+.|++++|+++ .+|+
T Consensus       184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~  222 (239)
T 2xwt_C          184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS  222 (239)
T ss_dssp             EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCC
T ss_pred             EEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCCh
Confidence            9999995 885556778889 99999999999998 6663

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=7.5e-20  Score=152.69  Aligned_cols=155  Identities=23%  Similarity=0.263  Sum_probs=76.6

Q ss_pred             CCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEE
Q 039778          296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLN  375 (459)
Q Consensus       296 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  375 (459)
                      ++++.|+++++.+.......+..+++|++|++++|.+. .++...+..+++|++|++++|++.+..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            34555555555554444444445555555555555554 44444444455555555555555544344444555555555


Q ss_pred             ccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccc
Q 039778          376 LDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG  455 (459)
Q Consensus       376 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  455 (459)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+       .++.|+.|+++.|+++|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence            55555554433344455555555555555553333334445555555555554441       23344555555555555


Q ss_pred             cCC
Q 039778          456 SLP  458 (459)
Q Consensus       456 ~~p  458 (459)
                      .+|
T Consensus       180 ~ip  182 (208)
T 2o6s_A          180 VVR  182 (208)
T ss_dssp             TBB
T ss_pred             eee
Confidence            554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=4.2e-19  Score=152.73  Aligned_cols=161  Identities=24%  Similarity=0.286  Sum_probs=141.2

Q ss_pred             CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778          270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  349 (459)
Q Consensus       270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  349 (459)
                      .+.++.|+++++.+.+ ++...+..+++|+.|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++
T Consensus        34 ~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           34 PADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDK  111 (251)
T ss_dssp             CTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCE
Confidence            4689999999999985 44444445899999999999999888888999999999999999998 777777778999999


Q ss_pred             eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778          350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL  429 (459)
Q Consensus       350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  429 (459)
                      |++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+
T Consensus       112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            99999999977777788899999999999999977777888999999999999999966667888999999999999999


Q ss_pred             cCC
Q 039778          430 EGP  432 (459)
Q Consensus       430 ~~~  432 (459)
                      .+.
T Consensus       192 ~c~  194 (251)
T 3m19_A          192 DCS  194 (251)
T ss_dssp             CTT
T ss_pred             eCC
Confidence            854

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=2.4e-18  Score=144.38  Aligned_cols=152  Identities=26%  Similarity=0.291  Sum_probs=83.9

Q ss_pred             cEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCC-CCcccCCCCCcEEEccCCccccccchhHHhcccccceeec
Q 039778          274 IALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSI-PSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL  352 (459)
Q Consensus       274 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  352 (459)
                      +.++++++.+. .+|..+   .+.++.|++++|.+.... ...|..+++|+.|++++|.++ .++...+..+++|++|++
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEEC
Confidence            46666666665 444432   234556666666655432 233555556666666666555 444434444555666666


Q ss_pred             cccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          353 SNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       353 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      ++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            666555555555555555666666655555555555555555555555555555444555555555555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1e-18  Score=145.78  Aligned_cols=166  Identities=24%  Similarity=0.224  Sum_probs=143.7

Q ss_pred             CCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccc
Q 039778          268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNL  347 (459)
Q Consensus       268 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  347 (459)
                      ...+++++|+++++.+. .++...+..+++|++|++++|.+.......+..+++|++|++++|.+. .++...+..+++|
T Consensus        25 ~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L  102 (208)
T 2o6s_A           25 GIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQL  102 (208)
T ss_dssp             CCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             CCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCC
Confidence            34568999999999998 566655556999999999999999777777899999999999999998 7777777779999


Q ss_pred             ceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCC
Q 039778          348 EYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDN  427 (459)
Q Consensus       348 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  427 (459)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.       ..+++|+.|+++.|
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWIN  175 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHH
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHH
Confidence            99999999999777777889999999999999998776667888999999999999776       34578999999999


Q ss_pred             cccCCCchhhcCCCc
Q 039778          428 HLEGPIPSEFCQLDY  442 (459)
Q Consensus       428 ~~~~~~~~~~~~~~~  442 (459)
                      .+.+.+|..++.++.
T Consensus       176 ~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          176 KHSGVVRNSAGSVAP  190 (208)
T ss_dssp             HCTTTBBCTTSSBCT
T ss_pred             hCCceeeccCccccC
Confidence            999999988887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=4.2e-18  Score=149.50  Aligned_cols=172  Identities=20%  Similarity=0.325  Sum_probs=140.3

Q ss_pred             CCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccc
Q 039778          268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNL  347 (459)
Q Consensus       268 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  347 (459)
                      ..+++|++|+++++.+. .++.  ...+++|+.|++++|.+.+..+  +..+++|+.|++++|.+. .++.  +..+++|
T Consensus        43 ~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L  114 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKL  114 (291)
T ss_dssp             HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTC
T ss_pred             hhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCC
Confidence            35678999999999887 4443  3348999999999999886443  888999999999999987 4443  4568999


Q ss_pred             ceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCC
Q 039778          348 EYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDN  427 (459)
Q Consensus       348 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  427 (459)
                      ++|++++|++.+.  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|
T Consensus       115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence            9999999998863  5677889999999999998865  567888999999999999885443  788999999999999


Q ss_pred             cccCCCchhhcCCCcccEEeccCCcccc
Q 039778          428 HLEGPIPSEFCQLDYLEILDLSKNNIAG  455 (459)
Q Consensus       428 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~  455 (459)
                      .+. .++. +..+++|+.|++++|+++.
T Consensus       189 ~i~-~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          189 HIS-DLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCC-BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             cCC-CChh-hccCCCCCEEECcCCcccC
Confidence            988 4553 8889999999999998874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=5.1e-18  Score=142.40  Aligned_cols=152  Identities=20%  Similarity=0.225  Sum_probs=91.4

Q ss_pred             cEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecc
Q 039778          274 IALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS  353 (459)
Q Consensus       274 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  353 (459)
                      +.++++++.++ .+|..+   .++++.|++++|.+.......|..+++|+.|++++|.+. .+....+..+++|++|+++
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence            56666666665 455432   246666666666666555555666666666666666665 3433334456666666666


Q ss_pred             ccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          354 NNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       354 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      +|.++......|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66666544445556666666666666666555555666666666666666666444445556666666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=3.1e-18  Score=141.31  Aligned_cols=152  Identities=16%  Similarity=0.178  Sum_probs=121.7

Q ss_pred             CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceE
Q 039778          295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL  374 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  374 (459)
                      +++|+.|+++++.+... + .+..+++|++|++++|.+. .++  .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            67788888888888732 3 5777888899999888765 333  34458899999999999887777888889999999


Q ss_pred             EccCCcccCCCcccccccCCCcEEEccccc-ccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcc
Q 039778          375 NLDGNHFIGDIPESLSNCSSLQGLYISDND-ITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI  453 (459)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  453 (459)
                      ++++|.+.+..+..+..+++|++|++++|+ +. .++ .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|+|
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            999999887777888899999999999998 55 555 67889999999999999884 44 678899999999999998


Q ss_pred             cc
Q 039778          454 AG  455 (459)
Q Consensus       454 ~~  455 (459)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=1.7e-17  Score=150.04  Aligned_cols=223  Identities=14%  Similarity=0.079  Sum_probs=129.1

Q ss_pred             ccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEE-EeecceeeeecccccccccCCcee
Q 039778          174 VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVL-LLSNNHFQIPISLEPFFNYSKLKI  252 (459)
Q Consensus       174 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~l~~  252 (459)
                      +++++|++++|.+....+.+|.++++|++|++++|.+.+.++...+.++++++.+ .+.+|.+....             
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-------------   96 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-------------   96 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-------------
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-------------
Confidence            3566666666666554445566666666666666665544544555666665543 33333332100             


Q ss_pred             eecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeec-CcCCCCCCCcccCCC-CCcEEEccCC
Q 039778          253 FHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITF-NAFNGSIPSSFGDMN-SLIYLDLSNN  330 (459)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~-~L~~L~l~~~  330 (459)
                                 ...+..+++|++|++++|.+. .++........++..+++.+ +.+.......|..+. .++.|++++|
T Consensus        97 -----------~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           97 -----------PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             -----------TTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             -----------chhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence                       112334456666666666665 33333322245566677655 344434444455543 5777888888


Q ss_pred             ccccccchhHHhcccccceeeccc-cccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCC
Q 039778          331 QLTGEIPEHLAMGCFNLEYLLLSN-NSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI  409 (459)
Q Consensus       331 ~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  409 (459)
                      +++ .++..++. .++|+.+++.+ |.++.....+|..+++|++|++++|+++...+..   +.+|+.|.+.++.....+
T Consensus       165 ~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~l  239 (350)
T 4ay9_X          165 GIQ-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKL  239 (350)
T ss_dssp             CCC-EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCC
T ss_pred             ccc-CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcC
Confidence            777 66666654 56777777764 4555444456777778888888888776443322   446666666666555456


Q ss_pred             cccccCcccccEEEcCCC
Q 039778          410 PTWIGNISFLDAIIMPDN  427 (459)
Q Consensus       410 ~~~~~~~~~L~~L~l~~~  427 (459)
                      |. +.++++|+.+++.++
T Consensus       240 P~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          240 PT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CC-TTTCCSCCEEECSCH
T ss_pred             CC-chhCcChhhCcCCCC
Confidence            53 566777777777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=3.7e-18  Score=154.93  Aligned_cols=178  Identities=24%  Similarity=0.211  Sum_probs=141.6

Q ss_pred             ccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCccc-CCCCCcEEEccCCccccccchhHHhcccccceee
Q 039778          273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFG-DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL  351 (459)
Q Consensus       273 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  351 (459)
                      -+.++++++.+. .+|..+   .+.++.|+|++|.+.......+. .+++|+.|++++|++. .++...+..+++|++|+
T Consensus        20 ~~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEE
Confidence            357788888777 566543   45688999999988877777776 8889999999999988 66666666789999999


Q ss_pred             ccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccc---cCcccccEEEcCCCc
Q 039778          352 LSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWI---GNISFLDAIIMPDNH  428 (459)
Q Consensus       352 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~  428 (459)
                      +++|++....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+   ..+++|+.|+|++|.
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            99999887777778888999999999999887777888889999999999999884333344   468899999999999


Q ss_pred             ccCCCchhhcCCCc--ccEEeccCCcccc
Q 039778          429 LEGPIPSEFCQLDY--LEILDLSKNNIAG  455 (459)
Q Consensus       429 ~~~~~~~~~~~~~~--L~~L~l~~~~~~~  455 (459)
                      +....+..+..++.  ++.|++++|++.+
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCccCHHHhhhccHhhcceEEecCCCccC
Confidence            98544566777776  4889999998875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=9.2e-18  Score=138.48  Aligned_cols=153  Identities=23%  Similarity=0.349  Sum_probs=104.2

Q ss_pred             cCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778           23 AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL  102 (459)
Q Consensus        23 ~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  102 (459)
                      ..+++|++|+++++.+.+...+..+++|++|++++|.+..  ...+..+++|++|++++|.+.. .....+..+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCEE
Confidence            4456777777777777665567777778888887776542  3367777778888887777653 223356777778888


Q ss_pred             ECcccccCCccCcccccCCCCCcEEecCCCc-cCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEc
Q 039778          103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLR-IRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI  181 (459)
Q Consensus       103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  181 (459)
                      ++++|.+.... +..+..+++|++|++++|. +..   ++ .+..+++|+.|++++|.+....    .+..+++|++|++
T Consensus       118 ~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~---~~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l  188 (197)
T 4ezg_A          118 DISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITD---IM-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYA  188 (197)
T ss_dssp             ECCSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCC---CG-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEE
T ss_pred             EecCCccCcHh-HHHHhhCCCCCEEEccCCCCccc---cH-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEe
Confidence            88877776533 4567777788888888776 544   33 5667778888888887776532    3566777888888


Q ss_pred             cccccc
Q 039778          182 DRNDFI  187 (459)
Q Consensus       182 ~~~~~~  187 (459)
                      ++|++.
T Consensus       189 ~~N~i~  194 (197)
T 4ezg_A          189 FSQTIG  194 (197)
T ss_dssp             CBC---
T ss_pred             eCcccC
Confidence            777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=1.4e-17  Score=158.08  Aligned_cols=161  Identities=30%  Similarity=0.379  Sum_probs=129.6

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  350 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  350 (459)
                      ++|++|++++|.+. .+|    ..+++|+.|++++|.+.. ++. +..  +|+.|++++|.++ .+|.    .+++|+.|
T Consensus        80 ~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L  145 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYI  145 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEE
T ss_pred             CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEE
Confidence            67999999999888 677    337899999999998886 444 554  8999999999988 4666    48899999


Q ss_pred             eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccc-------cEEE
Q 039778          351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFL-------DAII  423 (459)
Q Consensus       351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~  423 (459)
                      ++++|.+++ ++.   .+++|++|++++|.+.+ +|. +.  ++|+.|++++|.+. .+|. +..  +|       +.|+
T Consensus       146 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~  213 (571)
T 3cvr_A          146 NADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFR  213 (571)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEE
T ss_pred             eCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEe
Confidence            999999886 333   46889999999999886 555 55  78999999999988 6766 543  67       9999


Q ss_pred             cCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778          424 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       424 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      |++|.++ .+|..+..+++|+.|+|++|++++.+|
T Consensus       214 Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          214 CRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             cCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            9999998 688888889999999999999988765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=2.6e-17  Score=144.43  Aligned_cols=189  Identities=24%  Similarity=0.370  Sum_probs=133.0

Q ss_pred             cccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcc
Q 039778           27 SLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD  106 (459)
Q Consensus        27 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  106 (459)
                      ++..+.+....+.+......+++|++|++++|.+...  ..+..+++|++|++++|.+.+ .+.  +..+++|++|++++
T Consensus        25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCS
T ss_pred             HHHHHHhcCCCcccccchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCC
Confidence            3444445555555555566777777788877776533  346777788888887777663 322  67777888888888


Q ss_pred             cccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccccc
Q 039778          107 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDF  186 (459)
Q Consensus       107 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  186 (459)
                      |.+...   ..+..+++|++|++++|.+...    ..+..+++|+.|++++|.+...    ..+..+++|++|++++|.+
T Consensus       100 n~l~~~---~~l~~l~~L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A          100 NKVKDL---SSLKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             SCCCCG---GGGTTCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCC
T ss_pred             CcCCCC---hhhccCCCCCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCcc
Confidence            777664   2477778888888888877652    3566778888888888877654    2466778888888888887


Q ss_pred             ccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceee
Q 039778          187 IGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ  236 (459)
Q Consensus       187 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  236 (459)
                      .+..+  +..+++|++|++++|.+.+ +  ..+..+++|+.|++++|.+.
T Consensus       169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l--~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          169 SDIVP--LAGLTKLQNLYLSKNHISD-L--RALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCB-C--GGGTTCTTCSEEEEEEEEEE
T ss_pred             ccchh--hcCCCccCEEECCCCcCCC-C--hhhccCCCCCEEECcCCccc
Confidence            76554  6778888888888887763 3  23777888888888888765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.4e-17  Score=139.24  Aligned_cols=157  Identities=20%  Similarity=0.201  Sum_probs=127.2

Q ss_pred             CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778          270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  349 (459)
Q Consensus       270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  349 (459)
                      .+.-+.++.+++.+. .+|..+   .++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++
T Consensus        18 ~Cs~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           18 SCSGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTV   92 (229)
T ss_dssp             EEETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             EEeCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCE
Confidence            345677888888776 666543   478999999999998877788888899999999999887 777777777889999


Q ss_pred             eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778          350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL  429 (459)
Q Consensus       350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  429 (459)
                      |++++|++++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus        93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            999999888766677788888999999888887 5677778888889999998888855556677888888888888888


Q ss_pred             cCC
Q 039778          430 EGP  432 (459)
Q Consensus       430 ~~~  432 (459)
                      .+.
T Consensus       172 ~c~  174 (229)
T 3e6j_A          172 DCE  174 (229)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            743

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=3.1e-17  Score=157.62  Aligned_cols=169  Identities=27%  Similarity=0.362  Sum_probs=79.4

Q ss_pred             CccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEEC
Q 039778           25 LSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDM  104 (459)
Q Consensus        25 ~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  104 (459)
                      +++|+.|+++++.+.+...+..+++|++|+|++|.+....+  +..+++|++|++++|.+.. +  ..+..+++|++|++
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L--SSLKDLKKLKSLSL  116 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C--TTSTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C--hhhccCCCCCEEEe
Confidence            44555555555544444445555555555555555443222  4455555555555554431 1  13444555555555


Q ss_pred             cccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccc
Q 039778          105 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRN  184 (459)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  184 (459)
                      ++|.+..+   ..+..+++|+.|++++|.+...    ..+..+++|+.|++++|.+....+    +..+++|+.|++++|
T Consensus       117 s~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          117 EHNGISDI---NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             TTSCCCCC---GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred             cCCCCCCC---ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCC
Confidence            55554443   2344455555555555544431    334445555555555554433222    344445555555555


Q ss_pred             ccccccchhccCCCCCcEEEcCCCcCc
Q 039778          185 DFIGSLPWCLANLTSLRVLHVPDNQLT  211 (459)
Q Consensus       185 ~~~~~~~~~l~~~~~L~~L~l~~~~~~  211 (459)
                      .+.+.  ..+..+++|+.|++++|.+.
T Consensus       186 ~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          186 HISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             CCCCC--hHHccCCCCCEEEccCCcCc
Confidence            44432  12444455555555554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=3.8e-17  Score=137.07  Aligned_cols=155  Identities=19%  Similarity=0.146  Sum_probs=114.5

Q ss_pred             cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778          299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG  378 (459)
Q Consensus       299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  378 (459)
                      +.++++++.+... +..+.  +.++.|++++|.+++..+...+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~i-P~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccC-ccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4677777777643 33332  35678888888877433455566678888888888888766666777788888888888


Q ss_pred             CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCccccc
Q 039778          379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGS  456 (459)
Q Consensus       379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  456 (459)
                      |.+....+..|..+++|++|++++|.+.+..|..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|++.+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            888776666777788888888888888766677777788888888888888766677777888888888888887654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=7.8e-17  Score=136.15  Aligned_cols=133  Identities=27%  Similarity=0.276  Sum_probs=66.2

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  350 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  350 (459)
                      ++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.......|..+++|+.|++++|.++ .++...+..+++|++|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE
Confidence            455555555555553222222 22455555555555554444444455555555555555554 4444444445555555


Q ss_pred             eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778          351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  406 (459)
                      ++++|++. .++..+..+++|++|++++|.+....+..+..+++|+.|++.+|++.
T Consensus       118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            55555554 33444445555555555555555443344445555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=5.7e-17  Score=135.99  Aligned_cols=134  Identities=24%  Similarity=0.331  Sum_probs=67.8

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  350 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  350 (459)
                      ++++.|+++++.+. .++...+..+++|+.|++++|.+....+..|.++++|++|++++|.++ .++..++..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEE
Confidence            44555555555554 233322333455555555555555444445555555555555555554 4444444445555555


Q ss_pred             eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778          351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  406 (459)
                      ++++|++.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|++.
T Consensus       110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            55555555444445555555555555555555444444445555555555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=6.6e-17  Score=155.37  Aligned_cols=171  Identities=25%  Similarity=0.349  Sum_probs=148.4

Q ss_pred             CCCCcEEEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEcc
Q 039778            1 LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLM   80 (459)
Q Consensus         1 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   80 (459)
                      +++|+.|+++++.++...  .+..+++|+.|+|++|.+.+...+..+++|+.|+|++|.+..  +..+..+++|++|+++
T Consensus        42 L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLE  117 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CTTSTTCTTCCEEECT
T ss_pred             CCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--ChhhccCCCCCEEEec
Confidence            468999999999988643  588899999999999999887779999999999999999874  3478999999999999


Q ss_pred             CCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcc
Q 039778           81 ATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF  160 (459)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (459)
                      +|.+.. +  ..+..+++|+.|++++|.+..+   ..+..+++|+.|++++|.+...   +. +..+++|+.|++++|.+
T Consensus       118 ~N~l~~-l--~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~---~~-l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          118 HNGISD-I--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDI---VP-LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             TSCCCC-C--GGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCC
T ss_pred             CCCCCC-C--ccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCc---hh-hccCCCCCEEECcCCCC
Confidence            998873 3  3688899999999999999886   5788999999999999998774   33 88999999999999998


Q ss_pred             cccccccccccCcccccEEEccccccccc
Q 039778          161 AKTVTTTQGLCELVHLQDLYIDRNDFIGS  189 (459)
Q Consensus       161 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  189 (459)
                      ...    ..+..+++|+.|++++|++...
T Consensus       188 ~~l----~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          188 SDL----RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CBC----GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCC----hHHccCCCCCEEEccCCcCcCC
Confidence            764    2478899999999999988764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.71  E-value=2.7e-16  Score=142.08  Aligned_cols=104  Identities=19%  Similarity=0.281  Sum_probs=48.3

Q ss_pred             cEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCccc-ccccccCCCCcEEEc-c
Q 039778            5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSSI-LSSLTALSSLRKLNL-M   80 (459)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l-~   80 (459)
                      ++++.+++.++.+ |..+  .+++++|++++|.+..  ..+|.++++|++|+|++|++.+.. ..+|.++++++.+.. .
T Consensus        12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            3445555555522 2222  2355555555555543  223555555555555555543322 234455555444322 2


Q ss_pred             CCcceeeeccccccCCCCCcEEECcccccCCc
Q 039778           81 ATGFKGTFDVQELDSLSNLEELDMSDNEIDNL  112 (459)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  112 (459)
                      .+.+. .++...+..+++|++|++++|.+...
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~  119 (350)
T 4ay9_X           89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHL  119 (350)
T ss_dssp             ETTCC-EECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred             CCccc-ccCchhhhhccccccccccccccccC
Confidence            23333 33334455555555555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=7.9e-17  Score=153.04  Aligned_cols=124  Identities=29%  Similarity=0.314  Sum_probs=57.9

Q ss_pred             CccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEc
Q 039778          297 NLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNL  376 (459)
Q Consensus       297 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l  376 (459)
                      +|+.|++++|.+.. ++.   .+++|+.|++++|.++ .+|.    .+++|++|++++|.+++ ++. +.  ++|++|++
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L  187 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV  187 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence            44444444444443 111   3344555555555544 2333    24455555555555543 222 32  45555555


Q ss_pred             cCCcccCCCcccccccCCC-------cEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhc
Q 039778          377 DGNHFIGDIPESLSNCSSL-------QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFC  438 (459)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  438 (459)
                      ++|.+. .+|. +..  +|       +.|++++|.+. .+|..+..+++|+.|+|++|.+++.+|..+.
T Consensus       188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            555544 2233 322  34       55555555555 4455455555555555555555554454443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.70  E-value=8.6e-16  Score=141.21  Aligned_cols=330  Identities=12%  Similarity=0.105  Sum_probs=177.9

Q ss_pred             CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccC
Q 039778           41 SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG  120 (459)
Q Consensus        41 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  120 (459)
                      ..+|.+|.+|+.+.+... ++.+...+|.+|++|+.+.+..+ + ..++..+|..+++|+.+.+... +..+. ..++..
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~c~~L~~i~~p~~-l~~i~-~~aF~~  138 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-V-KMIGRCTFSGCYALKSILLPLM-LKSIG-VEAFKG  138 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCCCCCCTT-CCEEC-TTTTTT
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-c-eEccchhhcccccchhhcccCc-eeeec-ceeeec
Confidence            345566666666666532 44455555666666666666433 2 2344445556666665555432 22221 233344


Q ss_pred             CCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCC
Q 039778          121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSL  200 (459)
Q Consensus       121 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  200 (459)
                      +..++..........    ...+|.++++|+.+.+..+.. ...  ...+..+.+|+.+.+..+ +......+|.++..|
T Consensus       139 ~~~~~~~~~~~~~~i----~~~aF~~c~~L~~i~l~~~~~-~I~--~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L  210 (394)
T 4fs7_A          139 CDFKEITIPEGVTVI----GDEAFATCESLEYVSLPDSME-TLH--NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL  210 (394)
T ss_dssp             CCCSEEECCTTCCEE----CTTTTTTCTTCCEEECCTTCC-EEC--TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred             ccccccccCcccccc----chhhhcccCCCcEEecCCccc-eec--cccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence            433332222222111    123455666666666654321 111  123555666666666543 333444556666666


Q ss_pred             cEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEecc
Q 039778          201 RVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISY  280 (459)
Q Consensus       201 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  280 (459)
                      +.+.+.+....  + .........|+.+.+......  ..                       ...+..+..++.+.+..
T Consensus       211 ~~i~~~~~~~~--i-~~~~~~~~~l~~i~ip~~~~~--i~-----------------------~~~f~~~~~l~~~~~~~  262 (394)
T 4fs7_A          211 ENMEFPNSLYY--L-GDFALSKTGVKNIIIPDSFTE--LG-----------------------KSVFYGCTDLESISIQN  262 (394)
T ss_dssp             CBCCCCTTCCE--E-CTTTTTTCCCCEEEECTTCCE--EC-----------------------SSTTTTCSSCCEEEECC
T ss_pred             ceeecCCCceE--e-ehhhcccCCCceEEECCCcee--cc-----------------------cccccccccceeEEcCC
Confidence            66666554321  1 122233455666655432111  00                       11233445555555554


Q ss_pred             CccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccc
Q 039778          281 NKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ  360 (459)
Q Consensus       281 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~  360 (459)
                      +..  .+....+..+..++.+......+.   ...|..+.+|+.+.+.++ +. .+...+|.+|++|+.+++..+ +...
T Consensus       263 ~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I  334 (394)
T 4fs7_A          263 NKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEI  334 (394)
T ss_dssp             TTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred             Ccc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEE
Confidence            322  233333444666666666554332   245667778888888654 44 677777777888888888653 5545


Q ss_pred             cccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEE
Q 039778          361 LFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAI  422 (459)
Q Consensus       361 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  422 (459)
                      ...+|.++.+|+.+++..+ +..+...+|..|.+|+.+++..+ +. .+..+|.++++|+.+
T Consensus       335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            5677888888888888765 66566677888888888888654 22 334567777777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=3e-17  Score=147.07  Aligned_cols=101  Identities=21%  Similarity=0.200  Sum_probs=48.3

Q ss_pred             CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccc-eeeccccccccccccccccccCCce
Q 039778          295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE-YLLLSNNSLQGQLFSKKNNLTKLKR  373 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~L~~  373 (459)
                      +++|+.++++++.+.......|.++++|+.++++++ +. .++..+|.+|++|+ .+++.+ .+......+|..+++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            455555555555444444444555555555555544 33 44444444455554 555544 333333444444444444


Q ss_pred             EEccCCcccCCCcccccccCCCcEE
Q 039778          374 LNLDGNHFIGDIPESLSNCSSLQGL  398 (459)
Q Consensus       374 L~l~~~~~~~~~~~~~~~~~~L~~L  398 (459)
                      +++.++.+....+.+|.++++|++|
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhh
Confidence            4444444444444444444444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=3.9e-17  Score=140.94  Aligned_cols=168  Identities=20%  Similarity=0.252  Sum_probs=101.3

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  350 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  350 (459)
                      .++..++++++.+. .++ . ...+++|+.|++++|.+....  .+..+++|+.|++++|.++ .++.  +..+++|++|
T Consensus        19 ~~l~~l~l~~~~i~-~~~-~-~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           19 ANAVKQNLGKQSVT-DLV-S-QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHTCSCTT-SEE-C-HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEE
T ss_pred             HHHHHHHhcCCCcc-ccc-c-hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEE
Confidence            34455555555555 222 1 122566777777776665332  4666667777777777666 3433  4456777777


Q ss_pred             eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      ++++|++.+...  +.. ++|++|++++|.+.+.  ..+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.
T Consensus        91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCC
T ss_pred             ECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCc
Confidence            777776664221  222 6677777777766643  246666777777777777663 33 4566677777777777766


Q ss_pred             CCCchhhcCCCcccEEeccCCcccc
Q 039778          431 GPIPSEFCQLDYLEILDLSKNNIAG  455 (459)
Q Consensus       431 ~~~~~~~~~~~~L~~L~l~~~~~~~  455 (459)
                      +.  ..+..+++|+.|++++|++++
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             ch--HHhccCCCCCEEeCCCCcccC
Confidence            43  456666777777777777664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=6.1e-17  Score=139.76  Aligned_cols=168  Identities=19%  Similarity=0.268  Sum_probs=94.2

Q ss_pred             CccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEEC
Q 039778           25 LSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDM  104 (459)
Q Consensus        25 ~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  104 (459)
                      +.++..++++++.+.+...+..+++|++|++++|.++.. + .+..+++|++|++++|.+. ..+.  +..+++|++|++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEEC
Confidence            344555555555555544555566666666666655432 2 4556666666666666554 2222  555666666666


Q ss_pred             cccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccc
Q 039778          105 SDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRN  184 (459)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  184 (459)
                      ++|.+....  . +.. ++|++|++++|.+...    ..+..+++|+.|++++|++.+..    .+..+++|++|++++|
T Consensus        93 ~~N~l~~l~--~-~~~-~~L~~L~L~~N~l~~~----~~l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A           93 NRNRLKNLN--G-IPS-ACLSRLFLDNNELRDT----DSLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             CSSCCSCCT--T-CCC-SSCCEEECCSSCCSBS----GGGTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTS
T ss_pred             CCCccCCcC--c-ccc-CcccEEEccCCccCCC----hhhcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCC
Confidence            666665542  1 222 6666666666665542    23556666666666666655431    3455666666666666


Q ss_pred             ccccccchhccCCCCCcEEEcCCCcCc
Q 039778          185 DFIGSLPWCLANLTSLRVLHVPDNQLT  211 (459)
Q Consensus       185 ~~~~~~~~~l~~~~~L~~L~l~~~~~~  211 (459)
                      .+.+.  ..+..+++|+.|+++++.+.
T Consensus       161 ~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          161 EITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             cCcch--HHhccCCCCCEEeCCCCccc
Confidence            66554  44555666666666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.68  E-value=3.4e-15  Score=137.27  Aligned_cols=336  Identities=13%  Similarity=0.094  Sum_probs=226.7

Q ss_pred             CCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCC
Q 039778           59 KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS  138 (459)
Q Consensus        59 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  138 (459)
                      .++.+...+|.+|.+|+.+.+... +. .++..+|..|++|+.+++.++ +..+. ..++..+..|+.+.+..+-.. . 
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~-~~aF~~c~~L~~i~~p~~l~~-i-  131 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIG-RCTFSGCYALKSILLPLMLKS-I-  131 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEEC-TTTTTTCTTCCCCCCCTTCCE-E-
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEcc-chhhcccccchhhcccCceee-e-
Confidence            356677888999999999999754 33 677778999999999999755 44443 467788888888877654221 1 


Q ss_pred             cccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCc
Q 039778          139 KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSP  218 (459)
Q Consensus       139 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  218 (459)
                       ...++..+.............  .  ...++..+.+|+.+.+.++ +......+|..+.+|+.+.+..+ +. .+....
T Consensus       132 -~~~aF~~~~~~~~~~~~~~~~--i--~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~  203 (394)
T 4fs7_A          132 -GVEAFKGCDFKEITIPEGVTV--I--GDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LK-IIRDYC  203 (394)
T ss_dssp             -CTTTTTTCCCSEEECCTTCCE--E--CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CC-EECTTT
T ss_pred             -cceeeecccccccccCccccc--c--chhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ce-EeCchh
Confidence             223444554433332222211  1  1235778889999998654 33455677888899999988765 22 455666


Q ss_pred             ccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCc
Q 039778          219 LMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNL  298 (459)
Q Consensus       219 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  298 (459)
                      +..+..|+.+.+..+....                          ......+..|+.+.+.... . .+....+..+..+
T Consensus       204 F~~~~~L~~i~~~~~~~~i--------------------------~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l  255 (394)
T 4fs7_A          204 FAECILLENMEFPNSLYYL--------------------------GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDL  255 (394)
T ss_dssp             TTTCTTCCBCCCCTTCCEE--------------------------CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSC
T ss_pred             hccccccceeecCCCceEe--------------------------ehhhcccCCCceEEECCCc-e-ecccccccccccc
Confidence            7788888877665542221                          1112234567777775432 1 3444455558888


Q ss_pred             cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778          299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG  378 (459)
Q Consensus       299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  378 (459)
                      +.+.+..+.. ......|..+..++.+.....    .++...+..+.+|+.+.+.++ +......+|..+.+|+.+++.+
T Consensus       256 ~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~  329 (394)
T 4fs7_A          256 ESISIQNNKL-RIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY  329 (394)
T ss_dssp             CEEEECCTTC-EECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred             eeEEcCCCcc-eeeccccccccccceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence            8888876533 345667888888888887664    355566777899999998764 5545567888899999999965


Q ss_pred             CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEE
Q 039778          379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL  446 (459)
Q Consensus       379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  446 (459)
                      + +..+...+|.+|.+|+.+.+..+ +......+|.+|++|+.+++.++ +. .+...|..+++|+.+
T Consensus       330 ~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          330 L-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             c-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            4 66566778889999999999766 65455678889999999998765 22 234567788888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=1.8e-16  Score=143.92  Aligned_cols=161  Identities=27%  Similarity=0.254  Sum_probs=135.5

Q ss_pred             CCCCccEEEeccCccccccchhhhh-cCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccc
Q 039778          269 SRKNIIALDISYNKLQGHIPVEIGK-VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNL  347 (459)
Q Consensus       269 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  347 (459)
                      ....++.|++++|.+. .++...+. .+++|+.|++++|.+....+..|..+++|+.|++++|.+. .++...+..+++|
T Consensus        37 ~~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L  114 (361)
T 2xot_A           37 LPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQAL  114 (361)
T ss_dssp             CCTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTC
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCC
Confidence            3456899999999998 45444443 5899999999999999877788999999999999999998 7777777789999


Q ss_pred             ceeeccccccccccccccccccCCceEEccCCcccCCCcccc---cccCCCcEEEcccccccCCCcccccCccc--ccEE
Q 039778          348 EYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESL---SNCSSLQGLYISDNDITGSIPTWIGNISF--LDAI  422 (459)
Q Consensus       348 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L  422 (459)
                      ++|++++|++....+..|..+++|++|++++|.+....+..+   ..+++|+.|++++|.+....+..+..++.  ++.|
T Consensus       115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l  194 (361)
T 2xot_A          115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL  194 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred             CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence            999999999998888899999999999999999986555545   56899999999999999555567777776  4889


Q ss_pred             EcCCCcccC
Q 039778          423 IMPDNHLEG  431 (459)
Q Consensus       423 ~l~~~~~~~  431 (459)
                      +|++|.+.+
T Consensus       195 ~l~~N~~~C  203 (361)
T 2xot_A          195 YLHNNPLEC  203 (361)
T ss_dssp             ECCSSCEEC
T ss_pred             EecCCCccC
Confidence            999998863

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=2.7e-16  Score=126.16  Aligned_cols=136  Identities=24%  Similarity=0.246  Sum_probs=101.3

Q ss_pred             CCCcEEEccCCccc-cccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEE
Q 039778          320 NSLIYLDLSNNQLT-GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGL  398 (459)
Q Consensus       320 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  398 (459)
                      ++|+.|++++|.++ +.++.. +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            56777777777765 345544 34577888888888887754  667778888888888888876666666678888888


Q ss_pred             EcccccccCCC-cccccCcccccEEEcCCCcccCCCc---hhhcCCCcccEEeccCCcccccCCC
Q 039778          399 YISDNDITGSI-PTWIGNISFLDAIIMPDNHLEGPIP---SEFCQLDYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       399 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~p~  459 (459)
                      ++++|.+.+.. +..+..+++|+.|++++|.+.+..+   ..+..+++|+.|++++|.+. ++|+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            88888887432 2677788888888888888884443   36788888888888888877 5653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=3.6e-17  Score=146.58  Aligned_cols=290  Identities=11%  Similarity=0.041  Sum_probs=163.8

Q ss_pred             CCCCCcEEecCCCccCCCCcccccccC-CCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccC--
Q 039778          120 GLRKLRFLDLSGLRIRDGSKVLHSIGS-FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLAN--  196 (459)
Q Consensus       120 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--  196 (459)
                      .++++++|.+++.-...   ....+.. +++|+.|++++|++.......   ...+.++.+....+.   ....+|..  
T Consensus        23 ~~~~l~~L~l~g~i~~~---~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~---I~~~aF~~~~   93 (329)
T 3sb4_A           23 EANSITHLTLTGKLNAE---DFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANF---VPAYAFSNVV   93 (329)
T ss_dssp             HHHHCSEEEEEEEECHH---HHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTE---ECTTTTEEEE
T ss_pred             hhCceeEEEEeccccHH---HHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccc---cCHHHhcccc
Confidence            35678888887642211   1122333 788999999999876221111   111223334333332   23345666  


Q ss_pred             ------CCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCc-----cccCCccc
Q 039778          197 ------LTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANN-----SLSGPFRL  265 (459)
Q Consensus       197 ------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~  265 (459)
                            |++|+++++.+ .+. .+....+..+++|+.+++..+.+. ......|..+..+..+....     ........
T Consensus        94 ~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~  170 (329)
T 3sb4_A           94 NGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF  170 (329)
T ss_dssp             TTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred             cccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence                  88888888888 555 566777888888888888877654 22223333333222222111     00000011


Q ss_pred             CcCCCCCcc-EEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcc
Q 039778          266 PTRSRKNII-ALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGC  344 (459)
Q Consensus       266 ~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  344 (459)
                      .+..+..|+ .+.+....   .++..+..                     .-....+++.+.+.+.-.. .....+...+
T Consensus       171 ~f~~~~~L~~~i~~~~~~---~l~~~~~~---------------------~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~  225 (329)
T 3sb4_A          171 AFIEGEPLETTIQVGAMG---KLEDEIMK---------------------AGLQPRDINFLTIEGKLDN-ADFKLIRDYM  225 (329)
T ss_dssp             CEEESCCCEEEEEECTTC---CHHHHHHH---------------------TTCCGGGCSEEEEEECCCH-HHHHHHHHHC
T ss_pred             ccccccccceeEEecCCC---cHHHHHhh---------------------cccCccccceEEEeeeecH-HHHHHHHHhc
Confidence            112222332 12221110   11111111                     0012245566666554221 2222333347


Q ss_pred             cccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCc-EEEcccccccCCCcccccCcccccEEE
Q 039778          345 FNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ-GLYISDNDITGSIPTWIGNISFLDAII  423 (459)
Q Consensus       345 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~  423 (459)
                      ++|+.+++++|+++.....+|..+++|+++++.++ +..+.+.+|..+.+|+ .+.+.+ .+....+.+|..+++|+.++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            78888888888777767777888888888888776 6666667788888888 888877 66645567788888888888


Q ss_pred             cCCCcccCCCchhhcCCCcccEEec
Q 039778          424 MPDNHLEGPIPSEFCQLDYLEILDL  448 (459)
Q Consensus       424 l~~~~~~~~~~~~~~~~~~L~~L~l  448 (459)
                      ++++.+....+..|..+++|+.|+.
T Consensus       304 l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             eCCCccCccchhhhcCCcchhhhcc
Confidence            8888777555667788888887753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=2.4e-16  Score=129.23  Aligned_cols=131  Identities=19%  Similarity=0.165  Sum_probs=79.9

Q ss_pred             cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778          299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG  378 (459)
Q Consensus       299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  378 (459)
                      +.++++++.+.. ++..+.  ++++.|++++|.+.+..+..++..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            456666666643 233222  26667777776665222223344566666666666666665566666666666666666


Q ss_pred             CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCC
Q 039778          379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGP  432 (459)
Q Consensus       379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  432 (459)
                      |.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            666655555566666666666666666655566666666666666666666643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=2.1e-15  Score=121.01  Aligned_cols=136  Identities=21%  Similarity=0.214  Sum_probs=82.6

Q ss_pred             CccccEEEecccccc--C-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcE
Q 039778           25 LSSLKNLSLAYNRLE--G-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEE  101 (459)
Q Consensus        25 ~~~L~~L~l~~~~~~--~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  101 (459)
                      .++|++|++++|.+.  . +..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.... ...+..+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL-DMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCC-CHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHH-HHHHhhCCCCCE
Confidence            356677777666655  2 22346666777777777666543  55666677777777766665322 224445677777


Q ss_pred             EECcccccCCccCcccccCCCCCcEEecCCCccCCCCccc-ccccCCCcccEEEccCCccccc
Q 039778          102 LDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL-HSIGSFPSLKTLYLKSNNFAKT  163 (459)
Q Consensus       102 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~  163 (459)
                      |++++|.+........+..+++|++|++++|.+....... ..+..+++|+.|++++|.....
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            7777777666532356667777777777777666531100 2566677777777777665443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=2.8e-15  Score=121.29  Aligned_cols=129  Identities=19%  Similarity=0.182  Sum_probs=67.0

Q ss_pred             cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778          299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG  378 (459)
Q Consensus       299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  378 (459)
                      +.++++++.+.... ..+  .++|+.|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        10 ~~l~~~~~~l~~~p-~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCSSCC-TTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCccCC-CCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            44555555554322 111  235566666666555 44444444455666666666655544444455555566666665


Q ss_pred             CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccC
Q 039778          379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG  431 (459)
Q Consensus       379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  431 (459)
                      |.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            55554444444555555566665555553333334455555555555555553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.2e-15  Score=119.74  Aligned_cols=128  Identities=23%  Similarity=0.259  Sum_probs=89.0

Q ss_pred             CCCcEEEccCCccc-cccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEE
Q 039778          320 NSLIYLDLSNNQLT-GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGL  398 (459)
Q Consensus       320 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  398 (459)
                      ++|+.|++++|.+. +.++. .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            45667777777665 34444 234467777777777776654  566677788888888888776566666667788888


Q ss_pred             EcccccccCC-CcccccCcccccEEEcCCCcccCCCc---hhhcCCCcccEEeccC
Q 039778          399 YISDNDITGS-IPTWIGNISFLDAIIMPDNHLEGPIP---SEFCQLDYLEILDLSK  450 (459)
Q Consensus       399 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~  450 (459)
                      ++++|.+.+. .+..+..+++|+.|++++|.+.+..+   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8888887742 23667778888888888888875444   4577788888887764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=5.1e-15  Score=121.14  Aligned_cols=127  Identities=23%  Similarity=0.208  Sum_probs=78.5

Q ss_pred             cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778          299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG  378 (459)
Q Consensus       299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  378 (459)
                      +.++++++.+... +..+.  ++|+.|++++|.++ .++. .+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGIP--RDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSC-CSCCC--TTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcC-CCCCC--CCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            4566666665532 22222  46677777777666 5553 344566677777777766665556666666777777777


Q ss_pred             CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      |.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7666655556666666777777776666433445666666666666666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=2.1e-15  Score=123.60  Aligned_cols=174  Identities=24%  Similarity=0.290  Sum_probs=130.8

Q ss_pred             ccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCC-cccCCCCCcEEEccCCccccccchhHHhcccccceee
Q 039778          273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPS-SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL  351 (459)
Q Consensus       273 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  351 (459)
                      -++++++++.+. .+|..+   .++++.|++++|.+...... .+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus        10 ~~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             CCEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEE
Confidence            378999999886 777654   35899999999999866654 4889999999999999998 55445556799999999


Q ss_pred             ccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcc-cccCcccccEEEcCCCccc
Q 039778          352 LSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPT-WIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       352 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  430 (459)
                      +++|++.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++....+- .+.  ..++...+.+....
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~  162 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAAR  162 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCB
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCC
Confidence            999999988888899999999999999999988888899999999999999998854431 111  11222234444444


Q ss_pred             CCCchhhcCCCcccEEeccCCccccc
Q 039778          431 GPIPSEFCQLDYLEILDLSKNNIAGS  456 (459)
Q Consensus       431 ~~~~~~~~~~~~L~~L~l~~~~~~~~  456 (459)
                      +..|..+   ......++..+.+.+.
T Consensus       163 C~~P~~l---~~~~l~~l~~~~~~C~  185 (192)
T 1w8a_A          163 CGAPSKV---RDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             BCSSTTT---TTSBGGGSCTTTCCCC
T ss_pred             CCCChHH---cCCChhhCcHhhcCcC
Confidence            4555544   3344456666666544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2.4e-15  Score=117.97  Aligned_cols=127  Identities=24%  Similarity=0.276  Sum_probs=56.4

Q ss_pred             ccccEEEecccccc--C-CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEE
Q 039778           26 SSLKNLSLAYNRLE--G-SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEEL  102 (459)
Q Consensus        26 ~~L~~L~l~~~~~~--~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  102 (459)
                      ++|++|++++|.+.  . +..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+.. ...+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCT-HHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchH-HHHhhhCCCCCEE
Confidence            44555555544443  1 22234445555555555544432  34444555555555555444222 1133334555555


Q ss_pred             ECcccccCCccCcccccCCCCCcEEecCCCccCCCCccc-ccccCCCcccEEEc
Q 039778          103 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL-HSIGSFPSLKTLYL  155 (459)
Q Consensus       103 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l  155 (459)
                      ++++|.+.....+..+..+++|++|++++|.+....... ..+..+++|+.|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            555555444322244455555555555555444321100 13444555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=8.8e-14  Score=127.05  Aligned_cols=270  Identities=10%  Similarity=0.141  Sum_probs=145.8

Q ss_pred             cCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCc
Q 039778           70 ALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPS  149 (459)
Q Consensus        70 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  149 (459)
                      .+..++.+.+.+. +. .++..+|..+ +|+.+.+..+ +..+. ..++..+ .|+.+.+.. .+...  -..+|.+|++
T Consensus       111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~-~~aF~~~-~L~~i~lp~-~l~~I--~~~aF~~c~~  181 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIG-DMAFFNS-TVQEIVFPS-TLEQL--KEDIFYYCYN  181 (401)
T ss_dssp             ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEEC-TTTTTTC-CCCEEECCT-TCCEE--CSSTTTTCTT
T ss_pred             ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEEC-HHhcCCC-CceEEEeCC-CccEe--hHHHhhCccc
Confidence            3455555555443 11 3444455553 4666665544 33332 2334442 466666654 22221  2234566666


Q ss_pred             ccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEE
Q 039778          150 LKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLL  229 (459)
Q Consensus       150 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  229 (459)
                      |+.+++.++.+.......  +. +.+|+.+.+..+ +..+...+|.+|++|+++.+.++ +. .+....+.. .+|+.+.
T Consensus       182 L~~l~l~~n~l~~I~~~a--F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          182 LKKADLSKTKITKLPAST--FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             CCEEECTTSCCSEECTTT--TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEE
T ss_pred             CCeeecCCCcceEechhh--Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEE
Confidence            666666666555444332  22 456777777533 45555667777777888877663 22 344455555 5677777


Q ss_pred             eecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCC
Q 039778          230 LSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFN  309 (459)
Q Consensus       230 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  309 (459)
                      +..+-..  ..                       ...+..|.+|+.+.+.++....                    +...
T Consensus       255 lp~~i~~--I~-----------------------~~aF~~c~~L~~l~l~~~~~~~--------------------~~~~  289 (401)
T 4fdw_A          255 LPNGVTN--IA-----------------------SRAFYYCPELAEVTTYGSTFND--------------------DPEA  289 (401)
T ss_dssp             EETTCCE--EC-----------------------TTTTTTCTTCCEEEEESSCCCC--------------------CTTC
T ss_pred             eCCCccE--EC-----------------------hhHhhCCCCCCEEEeCCccccC--------------------Cccc
Confidence            7443100  00                       1122333444444444332210                    0001


Q ss_pred             CCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccc
Q 039778          310 GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESL  389 (459)
Q Consensus       310 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  389 (459)
                      ......|.+|++|+.+.+.+ .+. .++..+|.+|++|+.+.+..+ +......+|..+ +|+.+++.++.........|
T Consensus       290 ~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F  365 (401)
T 4fdw_A          290 MIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW  365 (401)
T ss_dssp             EECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred             EECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence            23345667777777777773 355 666677777777777777544 444456677777 77777777777665555566


Q ss_pred             cccC-CCcEEEccccc
Q 039778          390 SNCS-SLQGLYISDND  404 (459)
Q Consensus       390 ~~~~-~L~~L~l~~~~  404 (459)
                      ..++ +++.|.+-.+.
T Consensus       366 ~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          366 YGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCSCTTCCEEEECGGG
T ss_pred             cCCCCCccEEEeCHHH
Confidence            6653 56777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=1.1e-13  Score=126.46  Aligned_cols=269  Identities=10%  Similarity=0.123  Sum_probs=189.0

Q ss_pred             cCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCc
Q 039778           94 DSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCEL  173 (459)
Q Consensus        94 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  173 (459)
                      ..+..++.+.+.+. +..+. ..++..+ +|+.+.+..+ +...  -..+|.+ .+|+.+.+.. .+..+...  .+..|
T Consensus       110 ~~~~~l~~i~ip~~-i~~I~-~~aF~~~-~L~~i~l~~~-i~~I--~~~aF~~-~~L~~i~lp~-~l~~I~~~--aF~~c  179 (401)
T 4fdw_A          110 EILKGYNEIILPNS-VKSIP-KDAFRNS-QIAKVVLNEG-LKSI--GDMAFFN-STVQEIVFPS-TLEQLKED--IFYYC  179 (401)
T ss_dssp             EECSSCSEEECCTT-CCEEC-TTTTTTC-CCSEEECCTT-CCEE--CTTTTTT-CCCCEEECCT-TCCEECSS--TTTTC
T ss_pred             EecCCccEEEECCc-cCEeh-HhhcccC-CccEEEeCCC-ccEE--CHHhcCC-CCceEEEeCC-CccEehHH--HhhCc
Confidence            34578888888664 44443 4556665 7999998865 3321  2234555 4699999876 34333333  58889


Q ss_pred             ccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceee
Q 039778          174 VHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIF  253 (459)
Q Consensus       174 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~  253 (459)
                      ++|+.+++.++.+......+|. +.+|+++.+.++ +. .+....+.++++|+.+.+..+- .                 
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l-~-----------------  238 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENV-S-----------------  238 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTC-C-----------------
T ss_pred             ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCc-c-----------------
Confidence            9999999999888877777777 689999999864 43 5667788899999988886541 1                 


Q ss_pred             ecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccc
Q 039778          254 HANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLT  333 (459)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  333 (459)
                                                      .+....+.. .+|+.+.+. +.+.......|.+|++|+.+.+.++...
T Consensus       239 --------------------------------~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          239 --------------------------------TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             --------------------------------EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred             --------------------------------Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence                                            111112221 344555552 2233344566777777777777765442


Q ss_pred             ----cccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCC
Q 039778          334 ----GEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI  409 (459)
Q Consensus       334 ----~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  409 (459)
                          ..++...|.+|++|+.+.+.+ .+......+|..+++|+.+.+..+ +..+...+|.++ +|+++.+.+|......
T Consensus       285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          285 DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence                147788888999999999984 576667789999999999999665 666677889999 9999999999877555


Q ss_pred             cccccCcc-cccEEEcCCCccc
Q 039778          410 PTWIGNIS-FLDAIIMPDNHLE  430 (459)
Q Consensus       410 ~~~~~~~~-~L~~L~l~~~~~~  430 (459)
                      ...|..++ ++..|.+..+.+.
T Consensus       362 ~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          362 EKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CSSCCCSCTTCCEEEECGGGHH
T ss_pred             cccccCCCCCccEEEeCHHHHH
Confidence            56777774 7889998877654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=4.2e-17  Score=155.78  Aligned_cols=183  Identities=17%  Similarity=0.217  Sum_probs=142.0

Q ss_pred             CCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCc-------------CCCCCCCcccCCCCCcEEE-ccCCccc
Q 039778          268 RSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNA-------------FNGSIPSSFGDMNSLIYLD-LSNNQLT  333 (459)
Q Consensus       268 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~  333 (459)
                      ..++.|+.|+++++.+. .+|..+.. +++|+.|+++++.             ..+..+..+..+++|+.|+ ++.+.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            45788999999999887 78887776 7888888875543             2333445566677788887 5555443


Q ss_pred             cccchhHHh-------cccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778          334 GEIPEHLAM-------GCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       334 ~~~~~~~~~-------~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  406 (459)
                       .++.....       ....|+.|++++|.+++ ++. ++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence             22221110       13468899999999986 344 888999999999999988 67888999999999999999998


Q ss_pred             CCCcccccCcccccEEEcCCCcccCCC-chhhcCCCcccEEeccCCcccccCC
Q 039778          407 GSIPTWIGNISFLDAIIMPDNHLEGPI-PSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       407 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      + +| .+..+++|+.|+|++|.+.+.. |..+..+++|+.|+|++|++++..|
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            4 66 7889999999999999999665 8899999999999999999986544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=7.6e-16  Score=151.85  Aligned_cols=181  Identities=26%  Similarity=0.245  Sum_probs=112.6

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEe-----ecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccc
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSI-----TFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF  345 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L-----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  345 (459)
                      +.++.|++.++.+.. .+..... ...|+.+.+     ..+.+. ..+..+..++.|+.|+|++|.+. .++..++ .++
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~  247 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYD  247 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCC
T ss_pred             CccceEEeeCCCCCc-chhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCC
Confidence            456677777666653 2322221 222222222     222222 34566778889999999999887 7887776 589


Q ss_pred             ccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcC
Q 039778          346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP  425 (459)
Q Consensus       346 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  425 (459)
                      +|++|+|++|.++ .++..+..+++|++|+|++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|+|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            9999999999988 67778888999999999999988 66888888999999999999887 778888899999999999


Q ss_pred             CCcccCCCchhhcCCC-cccEEeccCCcccccCCC
Q 039778          426 DNHLEGPIPSEFCQLD-YLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       426 ~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~p~  459 (459)
                      +|.+++.+|..+.... .+..+++++|.+++.+|+
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            9999877777665432 222466777777777764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=4.5e-15  Score=119.90  Aligned_cols=133  Identities=15%  Similarity=0.165  Sum_probs=81.7

Q ss_pred             ccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCC
Q 039778          316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL  395 (459)
Q Consensus       316 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  395 (459)
                      +..+++|+.|++++|.+. .++. +....++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            344556666666666665 4432 233234677777777766643  456666777777777777664433444666777


Q ss_pred             cEEEcccccccCCCcc--cccCcccccEEEcCCCcccCCCchh----hcCCCcccEEeccCCccc
Q 039778          396 QGLYISDNDITGSIPT--WIGNISFLDAIIMPDNHLEGPIPSE----FCQLDYLEILDLSKNNIA  454 (459)
Q Consensus       396 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~  454 (459)
                      ++|++++|.+. .+|.  .+..+++|+.|++++|++. .+|..    +..+++|+.|++++|+..
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777777665 4444  5666677777777777766 44443    666677777777766543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.54  E-value=9.5e-13  Score=120.91  Aligned_cols=155  Identities=10%  Similarity=0.086  Sum_probs=71.8

Q ss_pred             ccccCc-cCceEEcCCCCCCcccccccccCCCCcEEEccCCc--ceeeeccccccCCCCCcEEECcccccCCccCccccc
Q 039778           43 NIEGMN-MLESLDLSGNKFNSSILSSLTALSSLRKLNLMATG--FKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYR  119 (459)
Q Consensus        43 ~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  119 (459)
                      +|.++. .|+.+.+... ++.+...+|.+|.+|+.+.+..+.  ....++..+|..|.+|+.+.+..+ +..+. ..++.
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~-~~aF~  134 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID-SEAFH  134 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC-TTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh-hhhhh
Confidence            444442 3555555433 444445555555555555554321  112344445555555555554332 22221 23455


Q ss_pred             CCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCC
Q 039778          120 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTS  199 (459)
Q Consensus       120 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  199 (459)
                      .+..|+.+.+......-   ....+..+..|+.+.+..+ +......  ++. ...|+.+.+... +......++..+..
T Consensus       135 ~c~~L~~i~lp~~~~~I---~~~~F~~c~~L~~i~~~~~-~~~I~~~--aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~  206 (394)
T 4gt6_A          135 HCEELDTVTIPEGVTSV---ADGMFSYCYSLHTVTLPDS-VTAIEER--AFT-GTALTQIHIPAK-VTRIGTNAFSECFA  206 (394)
T ss_dssp             TCTTCCEEECCTTCCEE---CTTTTTTCTTCCEEECCTT-CCEECTT--TTT-TCCCSEEEECTT-CCEECTTTTTTCTT
T ss_pred             hhcccccccccceeeee---cccceecccccccccccce-eeEeccc--ccc-ccceeEEEECCc-ccccccchhhhccc
Confidence            55556655554322110   1224455566666665433 1111111  122 245666666443 22334456667777


Q ss_pred             CcEEEcCCC
Q 039778          200 LRVLHVPDN  208 (459)
Q Consensus       200 L~~L~l~~~  208 (459)
                      ++.......
T Consensus       207 l~~~~~~~~  215 (394)
T 4gt6_A          207 LSTITSDSE  215 (394)
T ss_dssp             CCEEEECCS
T ss_pred             cceeccccc
Confidence            777665544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=3.1e-16  Score=149.85  Aligned_cols=196  Identities=19%  Similarity=0.207  Sum_probs=133.9

Q ss_pred             cCCccccEEEeccccccC-CcccccCccCceEEcCCCC-------------CCcccccccccCCCCcEEE-ccCCcceee
Q 039778           23 AGLSSLKNLSLAYNRLEG-SINIEGMNMLESLDLSGNK-------------FNSSILSSLTALSSLRKLN-LMATGFKGT   87 (459)
Q Consensus        23 ~~~~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~   87 (459)
                      ..+++|+.|+++++.+.. +..+.++++|++|+++++.             .....+..+..+++|+.|+ +..+... .
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-D  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-H
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-h
Confidence            346777777777777655 4456777777777776553             2334455566777777776 3333221 1


Q ss_pred             ecc-----ccccC--CCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcc
Q 039778           88 FDV-----QELDS--LSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF  160 (459)
Q Consensus        88 ~~~-----~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (459)
                      ...     ..+..  ...|+.|++++|.+..+  |. +..+++|+.|++++|.+..   +|..++.+++|+.|++++|.+
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l--p~-~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l  498 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CH-LEQLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDNAL  498 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC--CC-GGGGTTCCEEECCSSCCCC---CCGGGGGCTTCCEEECCSSCC
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCC--cC-ccccccCcEeecCcccccc---cchhhhcCCCCCEEECCCCCC
Confidence            100     01111  13588888888888876  44 8888888888888888874   777888888888888888888


Q ss_pred             cccccccccccCcccccEEEcccccccccc-chhccCCCCCcEEEcCCCcCcCcCCC--CcccCCCcccEEE
Q 039778          161 AKTVTTTQGLCELVHLQDLYIDRNDFIGSL-PWCLANLTSLRVLHVPDNQLTGNLSS--SPLMHLTSIEVLL  229 (459)
Q Consensus       161 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~  229 (459)
                      ...+    .+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+.+..+.  .....+|+|+.|+
T Consensus       499 ~~lp----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          499 ENVD----GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCCG----GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCc----ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            7642    4777888888888888888765 77888888888888888887643221  1233467777775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.51  E-value=3.2e-12  Score=117.37  Aligned_cols=208  Identities=9%  Similarity=0.116  Sum_probs=126.6

Q ss_pred             cccccchhhhcCCc-cccEEEeccc-cccCCcccccCccCceEEcCCCC---CCcccccccccCCCCcEEEccCCcceee
Q 039778           13 SFNNSVLSSLAGLS-SLKNLSLAYN-RLEGSINIEGMNMLESLDLSGNK---FNSSILSSLTALSSLRKLNLMATGFKGT   87 (459)
Q Consensus        13 ~~~~~~~~~~~~~~-~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~   87 (459)
                      .++.+...+|.+++ .|+++.+..+ .-.+..+|.+|.+|+.+.+..+.   ++.+...+|.+|.+|+.+.+... + ..
T Consensus        50 ~Vt~Ig~~aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~-~~  127 (394)
T 4gt6_A           50 PVSKIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-V-TE  127 (394)
T ss_dssp             EEEEECTTTTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-C-SE
T ss_pred             eeeEcCHhhccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-c-ce
Confidence            35667778888875 5899998765 22346788899999999887653   66667788889999998887654 2 25


Q ss_pred             eccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccccccccc
Q 039778           88 FDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT  167 (459)
Q Consensus        88 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  167 (459)
                      ++..++..+.+|+.+.+... +..+. ..++..+..|+.+.+..+-. .   +.........|+.+.+...... .  ..
T Consensus       128 I~~~aF~~c~~L~~i~lp~~-~~~I~-~~~F~~c~~L~~i~~~~~~~-~---I~~~aF~~~~l~~i~ip~~~~~-i--~~  198 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEG-VTSVA-DGMFSYCYSLHTVTLPDSVT-A---IEERAFTGTALTQIHIPAKVTR-I--GT  198 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEECCTTCC-E---ECTTTTTTCCCSEEEECTTCCE-E--CT
T ss_pred             ehhhhhhhhcccccccccce-eeeec-ccceecccccccccccceee-E---eccccccccceeEEEECCcccc-c--cc
Confidence            66667888899999988654 23332 45677888888888875422 1   2222223456787777544221 1  12


Q ss_pred             ccccCcccccEEEccccccccccc-------------hhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecc
Q 039778          168 QGLCELVHLQDLYIDRNDFIGSLP-------------WCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN  233 (459)
Q Consensus       168 ~~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (459)
                      ..+..+..++..............             ..+.....+..+.+.+. +. .+....+..+..|+.+.+...
T Consensus       199 ~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~  275 (394)
T 4gt6_A          199 NAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDS  275 (394)
T ss_dssp             TTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTT
T ss_pred             chhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccc
Confidence            245566677766554432211100             01112234445554332 11 333556777888888777543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=1.6e-13  Score=112.16  Aligned_cols=128  Identities=24%  Similarity=0.283  Sum_probs=104.0

Q ss_pred             ccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeec
Q 039778          273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL  352 (459)
Q Consensus       273 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  352 (459)
                      -+.++++++.+. .+|..+   .++++.|++++|.+. ..+..+..+++|+.|++++|.++ .++...+..+++|++|++
T Consensus        12 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEEC
Confidence            367888888877 666543   468899999999887 44577888889999999999888 666666677889999999


Q ss_pred             cccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778          353 SNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       353 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  406 (459)
                      ++|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++++|++.
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999988877778888899999999999888666667888889999999998875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=1.6e-13  Score=110.95  Aligned_cols=133  Identities=24%  Similarity=0.270  Sum_probs=98.4

Q ss_pred             CccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceee
Q 039778          272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL  351 (459)
Q Consensus       272 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  351 (459)
                      ..+.++++++.+. .+|..+   .++++.|++++|.+.......+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEE
Confidence            3567777777766 555432   467888888888887666666777888888888888887 66666666688888888


Q ss_pred             ccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCC
Q 039778          352 LSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSI  409 (459)
Q Consensus       352 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  409 (459)
                      +++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|++....
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            8888887666666777888888888888877655555677788888888888877443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=7.4e-14  Score=112.69  Aligned_cols=134  Identities=16%  Similarity=0.205  Sum_probs=106.2

Q ss_pred             hcCCccccEEEeccccccCCcccccCc-cCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCc
Q 039778           22 LAGLSSLKNLSLAYNRLEGSINIEGMN-MLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLE  100 (459)
Q Consensus        22 ~~~~~~L~~L~l~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  100 (459)
                      +..+.+|+.|++++|.+.....+..+. +|++|++++|.++..  ..+..+++|++|++++|.+. .++...+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCC
Confidence            456788999999999887755566555 899999999988754  67888999999999999887 45544567889999


Q ss_pred             EEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccc----cccCCCcccEEEccCCccc
Q 039778          101 ELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH----SIGSFPSLKTLYLKSNNFA  161 (459)
Q Consensus       101 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~  161 (459)
                      +|++++|.+..+.....+..+++|+.|++++|.+..   .+.    .+..+++|+.|+++++...
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~---~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN---KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG---STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC---cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999998776322378889999999999998875   344    3778899999999888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.47  E-value=3.9e-14  Score=139.68  Aligned_cols=157  Identities=23%  Similarity=0.268  Sum_probs=103.0

Q ss_pred             CCCccEEEeecCcCCCCCCCcccCCCCCcEEE-----ccCCccccccchhHHhcccccceeecccccccccccccccccc
Q 039778          295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLD-----LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLT  369 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~-----l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~  369 (459)
                      .+..+.+.+..+.+.... ..+.....|..+.     +..+.+.  ++...+..+++|+.|++++|.+. .++..+..++
T Consensus       172 ~~~~~~l~L~~n~~~~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~  247 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEAN-QALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD  247 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred             CCccceEEeeCCCCCcch-hhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence            356778888777776432 2222222233322     2233332  34455667899999999999998 4555566899


Q ss_pred             CCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEecc
Q 039778          370 KLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS  449 (459)
Q Consensus       370 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  449 (459)
                      +|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..|..+++|+.|+|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            9999999999998 77888999999999999999999 88999999999999999999998 889889999999999999


Q ss_pred             CCcccccCC
Q 039778          450 KNNIAGSLP  458 (459)
Q Consensus       450 ~~~~~~~~p  458 (459)
                      +|++++.+|
T Consensus       325 ~N~l~~~~p  333 (727)
T 4b8c_D          325 GNPLEKQFL  333 (727)
T ss_dssp             TSCCCSHHH
T ss_pred             CCccCCCCh
Confidence            999998766

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=1.5e-15  Score=125.21  Aligned_cols=132  Identities=21%  Similarity=0.270  Sum_probs=62.3

Q ss_pred             cccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCC
Q 039778          315 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSS  394 (459)
Q Consensus       315 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  394 (459)
                      .+..+++|+.|++++|.+. .++  .+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+ .+ .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            3444455555555555554 233  2233555555555555554 233333444555555555555443 22 3444555


Q ss_pred             CcEEEcccccccCCCc-ccccCcccccEEEcCCCcccCCCch----------hhcCCCcccEEeccCCccc
Q 039778          395 LQGLYISDNDITGSIP-TWIGNISFLDAIIMPDNHLEGPIPS----------EFCQLDYLEILDLSKNNIA  454 (459)
Q Consensus       395 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~~~~  454 (459)
                      |++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|.          .+..+++|+.|+  +++++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            5555555555542111 2444555555555555555433222          144555565554  44444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.45  E-value=3.7e-15  Score=134.84  Aligned_cols=185  Identities=14%  Similarity=0.047  Sum_probs=112.5

Q ss_pred             CCCccEEEeccCccccccchhhhh----cCCCccEEEeecCcCCCCCCCcc-cCCCCCcEEEccCCccccccchhHHh--
Q 039778          270 RKNIIALDISYNKLQGHIPVEIGK----VLPNLGFLSITFNAFNGSIPSSF-GDMNSLIYLDLSNNQLTGEIPEHLAM--  342 (459)
Q Consensus       270 ~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~--  342 (459)
                      .+.|++|++++|.+++.....+..    ..++|+.|+|++|.+.+.....+ ..+++|+.|++++|.+++.....+..  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467888888888876433333322    23578888888887764322222 23457888888888876444433332  


Q ss_pred             --cccccceeecccccccccc----ccccccccCCceEEccCCcccCCC----cccccccCCCcEEEcccccccCCC---
Q 039778          343 --GCFNLEYLLLSNNSLQGQL----FSKKNNLTKLKRLNLDGNHFIGDI----PESLSNCSSLQGLYISDNDITGSI---  409 (459)
Q Consensus       343 --~~~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~---  409 (459)
                        ..++|++|++++|.+++..    ..++...++|++|++++|.+.+..    +..+..+++|++|++++|.+.+..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              3467888888888776532    334456778888888888776443    344566678888888888776532   


Q ss_pred             -cccccCcccccEEEcCCCcccCCCchhhcCC---Cc--ccEEe--ccCCccc
Q 039778          410 -PTWIGNISFLDAIIMPDNHLEGPIPSEFCQL---DY--LEILD--LSKNNIA  454 (459)
Q Consensus       410 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~--L~~L~--l~~~~~~  454 (459)
                       +..+...++|+.|+|++|.+.+.....+..+   ..  |+.+.  +..+.+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence             2344456778888888888775444444322   21  66666  5555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=1.9e-12  Score=103.54  Aligned_cols=107  Identities=22%  Similarity=0.241  Sum_probs=84.4

Q ss_pred             CCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEc
Q 039778          321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYI  400 (459)
Q Consensus       321 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  400 (459)
                      ..+.++++++.++ .+|..+   .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            3578888888887 677654   368888888888888777777888888888888888888666666778888888888


Q ss_pred             ccccccCCCcccccCcccccEEEcCCCcccC
Q 039778          401 SDNDITGSIPTWIGNISFLDAIIMPDNHLEG  431 (459)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  431 (459)
                      ++|.+.+..+..+..+++|+.|+|++|.+.+
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            8888885555567788888888888888773

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=2.7e-14  Score=117.71  Aligned_cols=150  Identities=21%  Similarity=0.285  Sum_probs=115.6

Q ss_pred             CccEEEeccCccccccc------hhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccc
Q 039778          272 NIIALDISYNKLQGHIP------VEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF  345 (459)
Q Consensus       272 ~L~~L~l~~~~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  345 (459)
                      .++.++++.+.+.+..|      ..+.. +++|+.|++++|.+.. .+ .+..+++|+.|++++|.+. .++.. +..++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~-~~~~~   93 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL-DAVAD   93 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSH-HHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccch-hhcCC
Confidence            34444444444444433      34444 9999999999999986 34 7888999999999999998 77764 34579


Q ss_pred             ccceeeccccccccccccccccccCCceEEccCCcccCCCc-ccccccCCCcEEEcccccccCCCcc----------ccc
Q 039778          346 NLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIP-ESLSNCSSLQGLYISDNDITGSIPT----------WIG  414 (459)
Q Consensus       346 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~  414 (459)
                      +|++|++++|++++.  ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..|.          .+.
T Consensus        94 ~L~~L~L~~N~l~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCcC--CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            999999999999863  368889999999999999885433 4678899999999999998755443          367


Q ss_pred             CcccccEEEcCCCccc
Q 039778          415 NISFLDAIIMPDNHLE  430 (459)
Q Consensus       415 ~~~~L~~L~l~~~~~~  430 (459)
                      .+++|+.|+  ++.+.
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            889999876  66665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=4e-14  Score=128.05  Aligned_cols=161  Identities=17%  Similarity=0.123  Sum_probs=114.9

Q ss_pred             CCCccEEEeecCcCCCCCCCcc----c-CCCCCcEEEccCCccccccchhHHhcccccceeecccccccccccccc----
Q 039778          295 LPNLGFLSITFNAFNGSIPSSF----G-DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK----  365 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~----  365 (459)
                      .+.++.|++++|.+.......+    . ..++|+.|++++|.+++.....+...+++|++|++++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            5778889998888864332222    2 236888999998888765556666667788999999988876544443    


Q ss_pred             -ccccCCceEEccCCcccCCC----cccccccCCCcEEEcccccccCCC----cccccCcccccEEEcCCCcccCC----
Q 039778          366 -NNLTKLKRLNLDGNHFIGDI----PESLSNCSSLQGLYISDNDITGSI----PTWIGNISFLDAIIMPDNHLEGP----  432 (459)
Q Consensus       366 -~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----  432 (459)
                       ...++|++|++++|.+.+..    +..+..+++|++|++++|.+.+..    +..+...++|+.|+|++|.+.+.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             23578899999998876433    333466788999999998877532    45566677899999999888753    


Q ss_pred             CchhhcCCCcccEEeccCCcccc
Q 039778          433 IPSEFCQLDYLEILDLSKNNIAG  455 (459)
Q Consensus       433 ~~~~~~~~~~L~~L~l~~~~~~~  455 (459)
                      ++..+...++|+.|+|++|+|+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence            33445567888999999988864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=4e-12  Score=101.57  Aligned_cols=106  Identities=21%  Similarity=0.188  Sum_probs=86.1

Q ss_pred             ccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEcc
Q 039778          298 LGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLD  377 (459)
Q Consensus       298 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~  377 (459)
                      .+.++++++.+... +..+  .++|+.|++++|.++ .++...+..+++|++|++++|++.+..+..|..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            46888888888753 3333  268999999999998 5655556678999999999999987777778889999999999


Q ss_pred             CCcccCCCcccccccCCCcEEEcccccccC
Q 039778          378 GNHFIGDIPESLSNCSSLQGLYISDNDITG  407 (459)
Q Consensus       378 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  407 (459)
                      +|.+....+..+..+++|++|++++|++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            999887766678888999999999998873

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=7e-12  Score=100.50  Aligned_cols=105  Identities=18%  Similarity=0.230  Sum_probs=87.5

Q ss_pred             CcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcc
Q 039778          322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYIS  401 (459)
Q Consensus       322 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  401 (459)
                      -+.++++++.+. .+|..+   .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|+++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            378899999887 777754   3789999999999988778888889999999999999887666667888999999999


Q ss_pred             cccccCCCcccccCcccccEEEcCCCccc
Q 039778          402 DNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       402 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      +|.+.+..+..+..+++|+.|+|++|.+.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            99988544456888899999999999887

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=6.9e-12  Score=100.50  Aligned_cols=104  Identities=23%  Similarity=0.288  Sum_probs=87.2

Q ss_pred             cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778          299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG  378 (459)
Q Consensus       299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  378 (459)
                      +.++++++.+.. ++..+.  ++|+.|++++|.+. .++...+..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus        15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            688999988864 344343  78999999999998 56555666799999999999999977667788899999999999


Q ss_pred             CcccCCCcccccccCCCcEEEccccccc
Q 039778          379 NHFIGDIPESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~  406 (459)
                      |.+....+..+..+++|++|++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            9998766666888999999999999987

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.31  E-value=5.1e-10  Score=102.29  Aligned_cols=291  Identities=11%  Similarity=0.097  Sum_probs=165.5

Q ss_pred             hhcCCccccEEEecccc-ccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCC
Q 039778           21 SLAGLSSLKNLSLAYNR-LEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNL   99 (459)
Q Consensus        21 ~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L   99 (459)
                      ++....+|+++.+...- -.+..+|.+|.+|+.+++..+ ++.+...+|.+| +|+.+.+..+ + ..++..+|..+ +|
T Consensus        41 ~~~~~~~i~~v~ip~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l-~~I~~~aF~~~-~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNSGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-V-KKFGDYVFQGT-DL  115 (379)
T ss_dssp             TGGGGGGCSEEEECTTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-C-CEECTTTTTTC-CC
T ss_pred             ccccccCCEEEEeCCCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-e-eEeccceeccC-Cc
Confidence            35567889999997652 235678999999999999754 666778889988 6888887644 2 24555567655 79


Q ss_pred             cEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccc----------ccccc
Q 039778          100 EELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTV----------TTTQG  169 (459)
Q Consensus       100 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------~~~~~  169 (459)
                      +.+.+.++ +..+. ..++..+ .++.+.+..... ..  ....+..+.+++.+.+.........          .....
T Consensus       116 ~~i~lp~~-~~~i~-~~~F~~~-~l~~~~~~~~v~-~i--~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (379)
T 4h09_A          116 DDFEFPGA-TTEIG-NYIFYNS-SVKRIVIPKSVT-TI--KDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES  189 (379)
T ss_dssp             SEEECCTT-CCEEC-TTTTTTC-CCCEEEECTTCC-EE--CSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred             ccccCCCc-ccccc-ccccccc-eeeeeeccceee-cc--ccchhcccccccccccccccceeecccceecccccceecc
Confidence            99999765 22221 2334443 566665554321 11  2234567777877776544322111          01112


Q ss_pred             ccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCC
Q 039778          170 LCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSK  249 (459)
Q Consensus       170 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  249 (459)
                      +.....+..+.+.... .......+..+..|+.+.+... +. .+....+..+..|+.+.+..+-..  ..         
T Consensus       190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~v~~--I~---------  255 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKNVTS--IG---------  255 (379)
T ss_dssp             CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTTCCE--EC---------
T ss_pred             ccccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCCccE--eC---------
Confidence            3344556666554432 2234455667888999988664 22 344566778888988887654111  00         


Q ss_pred             ceeeecCccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccC
Q 039778          250 LKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSN  329 (459)
Q Consensus       250 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~  329 (459)
                                    ...+..+.+|+.+.+... +. .++...+..+.+|+.+.+..+.+.......|.+|.+|+.+.+..
T Consensus       256 --------------~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          256 --------------SFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             --------------TTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             --------------ccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence                          122344555666655432 21 33344444455555555555544444445555555555555543


Q ss_pred             CccccccchhHHhcccccceeeccc
Q 039778          330 NQLTGEIPEHLAMGCFNLEYLLLSN  354 (459)
Q Consensus       330 ~~~~~~~~~~~~~~~~~L~~L~l~~  354 (459)
                      + ++ .+...+|.+|++|+.+.+..
T Consensus       320 ~-l~-~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          320 A-LK-TIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             T-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred             c-cc-EEHHHHhhCCCCCCEEEECC
Confidence            2 33 44445555555555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.30  E-value=4.2e-10  Score=102.84  Aligned_cols=177  Identities=7%  Similarity=0.059  Sum_probs=106.2

Q ss_pred             CcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccC
Q 039778           41 SINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRG  120 (459)
Q Consensus        41 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  120 (459)
                      .+.+....+|+.+.+... ++.+...+|.+|.+|+.+.+..+ +. .++..+|..+ +|+.+.+..+ +..+. ..++..
T Consensus        39 ~~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~-~~aF~~  112 (379)
T 4h09_A           39 IPWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFG-DYVFQG  112 (379)
T ss_dssp             STTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEEC-TTTTTT
T ss_pred             ccccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEec-cceecc
Confidence            345677889999999764 66678889999999999999755 33 6777788887 6888877543 34432 334444


Q ss_pred             CCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccccccc------------
Q 039778          121 LRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIG------------  188 (459)
Q Consensus       121 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------  188 (459)
                       .+|+.+.+.......   ....+.++ .++.+.+..+ +.....  ..+..+..++.+.+.......            
T Consensus       113 -~~L~~i~lp~~~~~i---~~~~F~~~-~l~~~~~~~~-v~~i~~--~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  184 (379)
T 4h09_A          113 -TDLDDFEFPGATTEI---GNYIFYNS-SVKRIVIPKS-VTTIKD--GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNK  184 (379)
T ss_dssp             -CCCSEEECCTTCCEE---CTTTTTTC-CCCEEEECTT-CCEECS--CTTTTCTTCCEEEECTTCSSEEEETTEEEETTS
T ss_pred             -CCcccccCCCccccc---cccccccc-eeeeeeccce-eecccc--chhcccccccccccccccceeecccceeccccc
Confidence             479999987653221   11233333 5666655433 211211  245667778877766542211            


Q ss_pred             ccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecc
Q 039778          189 SLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN  233 (459)
Q Consensus       189 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (459)
                      .....+..+..+..+.+.....  .+....+..+.+++.+.+..+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~  227 (379)
T 4h09_A          185 TILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG  227 (379)
T ss_dssp             SEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT
T ss_pred             ceecccccccccccccccccee--EEeecccccccccceeeeccc
Confidence            1122334455666666654321  233455566777877776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=9.2e-10  Score=99.27  Aligned_cols=105  Identities=20%  Similarity=0.211  Sum_probs=86.4

Q ss_pred             cEEEccCC-ccccccchhHHhcccccceeeccc-cccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEc
Q 039778          323 IYLDLSNN-QLTGEIPEHLAMGCFNLEYLLLSN-NSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYI  400 (459)
Q Consensus       323 ~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  400 (459)
                      ..++++++ .++ .+|.  +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+.+..+..|..+++|++|+|
T Consensus        11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            34688887 787 7887  45688899999996 8998777788999999999999999998888888899999999999


Q ss_pred             ccccccCCCcccccCcccccEEEcCCCcccC
Q 039778          401 SDNDITGSIPTWIGNISFLDAIIMPDNHLEG  431 (459)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  431 (459)
                      ++|.+....+..+..++ |+.|+|.+|.+.+
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            99999854444555554 9999999998873

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.01  E-value=4.3e-10  Score=100.72  Aligned_cols=179  Identities=18%  Similarity=0.101  Sum_probs=112.3

Q ss_pred             CCCCccEEEeccCccc---------cccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchh
Q 039778          269 SRKNIIALDISYNKLQ---------GHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEH  339 (459)
Q Consensus       269 ~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  339 (459)
                      .+++|+.|.+......         +.+. .+...+|+|+.|.++++... ..+. + ..++|+.|++..|.++......
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence            3456777777543221         0122 33345889999999887322 1222 3 3689999999988877554444


Q ss_pred             HHh-cccccceeecccc--ccccc-----ccccc--ccccCCceEEccCCcccCCCcccc---cccCCCcEEEccccccc
Q 039778          340 LAM-GCFNLEYLLLSNN--SLQGQ-----LFSKK--NNLTKLKRLNLDGNHFIGDIPESL---SNCSSLQGLYISDNDIT  406 (459)
Q Consensus       340 ~~~-~~~~L~~L~l~~~--~i~~~-----~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~  406 (459)
                      +.. .+|+|++|+|+.+  ...+.     +...+  ..+|+|++|++.+|.+.+..+..+   ..+++|++|+++.|.+.
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            442 5899999998632  21111     11122  357899999999988765433333   25788999999998887


Q ss_pred             CCC----cccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCc
Q 039778          407 GSI----PTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNN  452 (459)
Q Consensus       407 ~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  452 (459)
                      +..    +..+..+++|+.|+|++|.+.++....+.+.. ...+++++++
T Consensus       293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred             hHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence            643    33445678999999999988755444444311 3457777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.00  E-value=3e-10  Score=101.71  Aligned_cols=181  Identities=14%  Similarity=0.141  Sum_probs=120.1

Q ss_pred             CCccEEEeccCcccc-cc---chhh---hhcCCCccEEEeecCcCCC---------CCCCcccCCCCCcEEEccCCcccc
Q 039778          271 KNIIALDISYNKLQG-HI---PVEI---GKVLPNLGFLSITFNAFNG---------SIPSSFGDMNSLIYLDLSNNQLTG  334 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~-~~---~~~~---~~~~~~L~~L~L~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~~~~  334 (459)
                      ..++.|.+..+...+ ..   ...+   ...+++|+.|.+.......         .+...+..+|+|+.|.+.++.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            456777777655431 11   0111   2237899999996643211         12234567899999999987322 


Q ss_pred             ccchhHHhcccccceeeccccccccccccccc--cccCCceEEccCC--cccCC-----Ccccc--cccCCCcEEEcccc
Q 039778          335 EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKN--NLTKLKRLNLDGN--HFIGD-----IPESL--SNCSSLQGLYISDN  403 (459)
Q Consensus       335 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~~  403 (459)
                      .++.  . ..++|++|++..|.+.......+.  .+|+|++|+|+.+  ...+.     +...+  ..+++|+.|.+.+|
T Consensus       186 ~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          186 SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred             eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence            2333  2 378999999999988765555554  6899999998632  11111     11222  25789999999999


Q ss_pred             cccCCCccccc---CcccccEEEcCCCcccCC----CchhhcCCCcccEEeccCCcccc
Q 039778          404 DITGSIPTWIG---NISFLDAIIMPDNHLEGP----IPSEFCQLDYLEILDLSKNNIAG  455 (459)
Q Consensus       404 ~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~  455 (459)
                      .+.+..+..+.   .+++|+.|+|+.|.+.+.    ++..+..+++|+.|+|++|.++.
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            88754433333   478999999999998764    33344567999999999999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.00  E-value=4.3e-10  Score=101.43  Aligned_cols=103  Identities=22%  Similarity=0.167  Sum_probs=87.5

Q ss_pred             EEEeecC-cCCCCCCCcccCCCCCcEEEccC-CccccccchhHHhcccccceeeccccccccccccccccccCCceEEcc
Q 039778          300 FLSITFN-AFNGSIPSSFGDMNSLIYLDLSN-NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLD  377 (459)
Q Consensus       300 ~L~L~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~  377 (459)
                      .++.+++ .+.. ++. +..+++|+.|+|++ |.+. .++...+..+++|+.|+|++|.+.+..+..|..+++|++|+|+
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4677777 6764 555 88899999999997 8998 7777777789999999999999998888899999999999999


Q ss_pred             CCcccCCCcccccccCCCcEEEccccccc
Q 039778          378 GNHFIGDIPESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       378 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  406 (459)
                      +|.+....+..+..+. |+.|++.+|++.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999866555565554 999999999887

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.82  E-value=1.9e-09  Score=84.50  Aligned_cols=82  Identities=18%  Similarity=0.285  Sum_probs=41.5

Q ss_pred             cccEEEeccccccC--CcccccCccCceEEcCCCC-CCcccccccccC----CCCcEEEccCCcceeeeccccccCCCCC
Q 039778           27 SLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNK-FNSSILSSLTAL----SSLRKLNLMATGFKGTFDVQELDSLSNL   99 (459)
Q Consensus        27 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~~~~~~~~L   99 (459)
                      .|++|++++|.+.+  ...+..+++|++|+|++|. +++.....++.+    ++|++|++++|...++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555433  2234455555555555553 555444444442    3555555555543323334445555555


Q ss_pred             cEEECcccc
Q 039778          100 EELDMSDNE  108 (459)
Q Consensus       100 ~~L~l~~~~  108 (459)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=2.4e-09  Score=86.53  Aligned_cols=114  Identities=15%  Similarity=0.086  Sum_probs=51.8

Q ss_pred             ccCCCCCcEEEccCC-ccccccchhHH---hcccccceeecccccccccc----ccccccccCCceEEccCCcccCCC--
Q 039778          316 FGDMNSLIYLDLSNN-QLTGEIPEHLA---MGCFNLEYLLLSNNSLQGQL----FSKKNNLTKLKRLNLDGNHFIGDI--  385 (459)
Q Consensus       316 ~~~~~~L~~L~l~~~-~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~l~~~~~~~~~--  385 (459)
                      +...++|++|++++| .+.+.....+.   ...++|++|++++|.+.+..    ...+...++|++|+|++|.+.+..  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344556666666666 55533222222   12345555555555554322    222233345555555555544332  


Q ss_pred             --cccccccCCCcEEEc--ccccccCCC----cccccCcccccEEEcCCCcc
Q 039778          386 --PESLSNCSSLQGLYI--SDNDITGSI----PTWIGNISFLDAIIMPDNHL  429 (459)
Q Consensus       386 --~~~~~~~~~L~~L~l--~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~  429 (459)
                        ..++...++|++|++  ++|.+.+..    ...+...++|+.|+|++|.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence              223344445555555  445444321    12222334455555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.71  E-value=7.6e-09  Score=81.06  Aligned_cols=86  Identities=9%  Similarity=-0.037  Sum_probs=58.0

Q ss_pred             CCccEEEeecCcCCCCCCCcccCCCCCcEEEccCC-ccccccchhHHhc---ccccceeeccccc-cccccccccccccC
Q 039778          296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN-QLTGEIPEHLAMG---CFNLEYLLLSNNS-LQGQLFSKKNNLTK  370 (459)
Q Consensus       296 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~---~~~L~~L~l~~~~-i~~~~~~~~~~~~~  370 (459)
                      ..|+.|++++|.+++.....+.++++|+.|++++| .+++.....+...   +++|++|++++|. |++.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            35777777777776666666677777888888777 4665555555431   4567777777773 66666666666777


Q ss_pred             CceEEccCCcc
Q 039778          371 LKRLNLDGNHF  381 (459)
Q Consensus       371 L~~L~l~~~~~  381 (459)
                      |++|++++|+.
T Consensus       141 L~~L~L~~c~~  151 (176)
T 3e4g_A          141 LKYLFLSDLPG  151 (176)
T ss_dssp             CCEEEEESCTT
T ss_pred             CCEEECCCCCC
Confidence            77777777763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.66  E-value=9.1e-09  Score=83.14  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=53.0

Q ss_pred             CCCccEEEeecC-cCCCC----CCCcccCCCCCcEEEccCCccccccchhHH---hcccccceeeccccccccc----cc
Q 039778          295 LPNLGFLSITFN-AFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLA---MGCFNLEYLLLSNNSLQGQ----LF  362 (459)
Q Consensus       295 ~~~L~~L~L~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~----~~  362 (459)
                      .+.|++|+|++| .+.+.    +...+...++|++|++++|.+.+.....+.   ...++|++|++++|.|++.    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            455555555555 55432    122334445555556655555433322221   1234555566655555542    22


Q ss_pred             cccccccCCceEEc--cCCcccCCC----cccccccCCCcEEEccccccc
Q 039778          363 SKKNNLTKLKRLNL--DGNHFIGDI----PESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       363 ~~~~~~~~L~~L~l--~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~  406 (459)
                      .++...++|++|++  ++|.+....    ...+...++|++|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            33444455555655  555554332    122334455555655555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=2.8e-07  Score=78.08  Aligned_cols=79  Identities=25%  Similarity=0.281  Sum_probs=44.6

Q ss_pred             hcccccceeecccccccc--ccccccccccCCceEEccCCcccCCCcccccccC--CCcEEEcccccccCCCcc------
Q 039778          342 MGCFNLEYLLLSNNSLQG--QLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCS--SLQGLYISDNDITGSIPT------  411 (459)
Q Consensus       342 ~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~------  411 (459)
                      ..+++|+.|+|++|.+.+  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|++.+..|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            346677777777777665  2234445667777777777766643  1222222  666666666666644331      


Q ss_pred             -cccCcccccEE
Q 039778          412 -WIGNISFLDAI  422 (459)
Q Consensus       412 -~~~~~~~L~~L  422 (459)
                       .+..+|+|+.|
T Consensus       245 ~il~~~P~L~~L  256 (267)
T 3rw6_A          245 AIRERFPKLLRL  256 (267)
T ss_dssp             HHHHHCTTCCEE
T ss_pred             HHHHHCcccCeE
Confidence             23345555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=1.2e-06  Score=74.27  Aligned_cols=80  Identities=28%  Similarity=0.346  Sum_probs=57.0

Q ss_pred             cCCccccEEEeccccccCCcc----cccCccCceEEcCCCCCCcccccccccCC--CCcEEEccCCcceeeec------c
Q 039778           23 AGLSSLKNLSLAYNRLEGSIN----IEGMNMLESLDLSGNKFNSSILSSLTALS--SLRKLNLMATGFKGTFD------V   90 (459)
Q Consensus        23 ~~~~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~------~   90 (459)
                      ..+++|++|+|++|.+.+...    +..+++|+.|+|++|.+...  ..+..+.  +|++|.+.+|.+...++      .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457889999999998877443    34788999999999988754  2333333  89999999888764332      1


Q ss_pred             ccccCCCCCcEEEC
Q 039778           91 QELDSLSNLEELDM  104 (459)
Q Consensus        91 ~~~~~~~~L~~L~l  104 (459)
                      ..+..+++|+.||-
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            23567888888863

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.78  E-value=8.2e-06  Score=65.20  Aligned_cols=85  Identities=16%  Similarity=0.186  Sum_probs=37.3

Q ss_pred             CCCCCcEEEccCC-ccccccchhHHh---cccccceeeccccccccccc----cccccccCCceEEccCCcccCCCc---
Q 039778          318 DMNSLIYLDLSNN-QLTGEIPEHLAM---GCFNLEYLLLSNNSLQGQLF----SKKNNLTKLKRLNLDGNHFIGDIP---  386 (459)
Q Consensus       318 ~~~~L~~L~l~~~-~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~---  386 (459)
                      .-+.|+.|++.++ .+.+.....++.   .-+.|+.|+|++|+|.+...    +++..-+.|++|+|++|.+.....   
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3445666666553 444332222222   22345555555555543222    222333455555555555443322   


Q ss_pred             -ccccccCCCcEEEccc
Q 039778          387 -ESLSNCSSLQGLYISD  402 (459)
Q Consensus       387 -~~~~~~~~L~~L~l~~  402 (459)
                       .++.....|++|++++
T Consensus       119 a~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHTTTTCCCSEEECCC
T ss_pred             HHHHhhCCceeEEECCC
Confidence             2223334455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.72  E-value=1.8e-05  Score=63.30  Aligned_cols=110  Identities=14%  Similarity=0.095  Sum_probs=51.6

Q ss_pred             CCCccEEEeecC-cCCCC----CCCcccCCCCCcEEEccCCccccccchhHH---hcccccceeecccccccccc----c
Q 039778          295 LPNLGFLSITFN-AFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLA---MGCFNLEYLLLSNNSLQGQL----F  362 (459)
Q Consensus       295 ~~~L~~L~L~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~----~  362 (459)
                      -+.|+.|+|+++ .+.+.    +...+..-+.|+.|+|++|.+.+.....+.   ..-+.|++|+|+.|.|+...    .
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            445666666553 44421    223344445566666666665543332222   22345666666666665432    2


Q ss_pred             cccccccCCceEEccCCc---ccCC----CcccccccCCCcEEEccccc
Q 039778          363 SKKNNLTKLKRLNLDGNH---FIGD----IPESLSNCSSLQGLYISDND  404 (459)
Q Consensus       363 ~~~~~~~~L~~L~l~~~~---~~~~----~~~~~~~~~~L~~L~l~~~~  404 (459)
                      +++..-+.|++|+|+++.   +...    +..++...+.|++|+++.+.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            233344456666665432   1211    12233444555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.54  E-value=0.0049  Score=45.80  Aligned_cols=57  Identities=12%  Similarity=0.237  Sum_probs=42.2

Q ss_pred             ceEEccCCccc-CCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          372 KRLNLDGNHFI-GDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       372 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      ..++-++..++ ..+|..+.  .+|++|+|++|.+....+..|..+++|+.|+|++|...
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777765 24565544  46889999999988555567778889999999998776

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.80  E-value=0.019  Score=42.53  Aligned_cols=56  Identities=18%  Similarity=0.147  Sum_probs=43.3

Q ss_pred             eeeccccccc-cccccccccccCCceEEccCCcccCCCcccccccCCCcEEEccccccc
Q 039778          349 YLLLSNNSLQ-GQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       349 ~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  406 (459)
                      .++-++.+++ ..++..+  .++|++|+|++|.++...+..|..+++|++|+|.+|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666665 2334333  257999999999999877778889999999999999875

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=89.78  E-value=0.69  Score=32.11  Aligned_cols=48  Identities=23%  Similarity=0.207  Sum_probs=31.0

Q ss_pred             CCcccccchhhhcCCccccEEEecccc-ccCCcccccCccCceEEcCCC
Q 039778           11 HNSFNNSVLSSLAGLSSLKNLSLAYNR-LEGSINIEGMNMLESLDLSGN   58 (459)
Q Consensus        11 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~   58 (459)
                      +-.++.+...+|.+|..|+.+.|-.+- ..+..+|.+|.+|+.+.+.+.
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcCC
Confidence            345666666777777777777776552 234556777777777777654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=86.66  E-value=0.62  Score=32.36  Aligned_cols=45  Identities=13%  Similarity=0.134  Sum_probs=22.0

Q ss_pred             CCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcc
Q 039778           60 FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD  106 (459)
Q Consensus        60 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  106 (459)
                      ++.+...+|.+|.+|+.+.+..+  ...+...+|..|.+|+.+.+.+
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred             cCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence            34444455555555555555443  1133444555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	459
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.4 bits (202), Expect = 1e-17
 Identities = 76/388 (19%), Positives = 145/388 (37%), Gaps = 30/388 (7%)

Query: 23  AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT 82
             L+      L    +  +++   ++ + +L        S  +  +  L++L ++N    
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 76

Query: 83  GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH 142
                  ++ L  L ++   +    +I  L    +  GL            +++ + +  
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 143 SIGSFPSLKTL-------YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLA 195
              S  ++  +        L+  +F   VT  + L  L  L+ L I  N         LA
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLA 194

Query: 196 NLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHA 255
            LT+L  L   +NQ++     +PL  LT+++ L L+ N  +   +L    N + L +  A
Sbjct: 195 KLTNLESLIATNNQISD---ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL--A 249

Query: 256 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSS 315
           NN +S     P      +  L +  N++    P+     L  L  L +  N       S 
Sbjct: 250 NNQISNL--APLSGLTKLTELKLGANQISNISPLAG---LTALTNLELNENQLE--DISP 302

Query: 316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLN 375
             ++ +L YL L  N ++   P         L+ L  +NN +     S   NLT +  L+
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357

Query: 376 LDGNHFIGDIPESLSNCSSLQGLYISDN 403
              N      P  L+N + +  L ++D 
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 1e-16
 Identities = 62/390 (15%), Positives = 123/390 (31%), Gaps = 57/390 (14%)

Query: 94  DSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTL 153
            +L+   +  +    + + V   D   L ++  L    L I+     +  +    +L  +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKS----IDGVEYLNNLTQI 71

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGN 213
              +N      T    L  L  L D+ ++ N      P       +   L          
Sbjct: 72  NFSNNQL----TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127

Query: 214 LSSSPLMHLTSIEVLLL------------SNNHFQIPISLEPFFNYSKLKIFHANNSLSG 261
           L +   ++   +    +                F   ++                +S   
Sbjct: 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187

Query: 262 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNS 321
                     N+ +L  + N++    P+ I     NL  LS+  N        +   + +
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD--IGTLASLTN 242

Query: 322 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG--------------------QL 361
           L  LDL+NNQ++   P     G   L  L L  N +                      + 
Sbjct: 243 LTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 299

Query: 362 FSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDA 421
            S  +NL  L  L L  N+     P  +S+ + LQ L+ ++N ++    + + N++ ++ 
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355

Query: 422 IIMPDNHLEGPIPSEFCQLDYLEILDLSKN 451
           +    N +    P     L  +  L L+  
Sbjct: 356 LSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.1 bits (191), Expect = 3e-16
 Identities = 77/385 (20%), Positives = 137/385 (35%), Gaps = 26/385 (6%)

Query: 48  NMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDN 107
            + E +     K N +   S T L  +  L     G K    +  ++ L+NL +++ S+N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNN 76

Query: 108 EIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT 167
           ++ ++   K+   L  +   +     I   + + +  G       +         T    
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 168 QG-----LCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHL 222
                  + ++  L  L   +    G+    L  L +L  L   D         S L  L
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 223 TSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNK 282
           T++E L+ +NN       L    N  +L +    N L     L   S  N+  LD++ N+
Sbjct: 197 TNLESLIATNNQISDITPLGILTNLDELSLN--GNQLKDIGTLA--SLTNLTDLDLANNQ 252

Query: 283 LQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM 342
           +    P+     L  L  L +  N  +   P     +  L  L                 
Sbjct: 253 ISNLAPLSG---LTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPIS 304

Query: 343 GCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISD 402
              NL YL L  N++     S  ++LTKL+RL    N        SL+N +++  L    
Sbjct: 305 NLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 403 NDITGSIPTWIGNISFLDAIIMPDN 427
           N I+   P  + N++ +  + + D 
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.0 bits (188), Expect = 7e-16
 Identities = 58/360 (16%), Positives = 123/360 (34%), Gaps = 24/360 (6%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           L  +  L        +  +  +  L++L  ++ + N+L     ++ +  L  + ++ N+ 
Sbjct: 43  LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 61  NSSIL-----SSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVP 115
                     +         ++  +      T   +   S + + ++           + 
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 116 KDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVH 175
              +        +L+ L   D S    S  S  +  T           ++    L  L +
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 220

Query: 176 LQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHF 235
           L +L ++ N         LA+LT+L  L + +NQ++     +PL  LT +  L L  N  
Sbjct: 221 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQI 275

Query: 236 QIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 295
                L      + L++             P  + KN+  L + +N +    PV     L
Sbjct: 276 SNISPLAGLTALTNLELNENQL----EDISPISNLKNLTYLTLYFNNISDISPVS---SL 328

Query: 296 PNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 355
             L  L    N  +    SS  ++ ++ +L   +NQ++   P         +  L L++ 
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 6e-14
 Identities = 48/248 (19%), Positives = 81/248 (32%), Gaps = 4/248 (1%)

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHAN-NSLSGPFRLPTRSRK 271
            L + P+    + + + L  N     +    F     L I   + N L+           
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQ 331
            +  LD+S N     +       L  L  L +         P  F  + +L YL L +N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 332 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSN 391
           L     +       NL +L L  N +          L  L RL L  N      P +  +
Sbjct: 141 LQALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 392 CSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 451
              L  LY+  N+++      +  +  L  + + DN       +      +L+    S +
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSS 258

Query: 452 NIAGSLPS 459
            +  SLP 
Sbjct: 259 EVPCSLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 45/258 (17%), Positives = 86/258 (33%), Gaps = 8/258 (3%)

Query: 175 HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH 234
             Q +++  N              +L +L +  N L    +++        ++ L S+N 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL-SDNA 91

Query: 235 FQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSR-KNIIALDISYNKLQGHIPVEIGK 293
               +    F    +L   H +                 +  L +  N LQ     +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFR 150

Query: 294 VLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 353
            L NL  L +  N  +     +F  ++SL  L L  N++    P         +   L +
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 354 NNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWI 413
           NN            L  L+ L L+ N ++ D   +    + LQ    S +++  S+P  +
Sbjct: 211 NNLSALP-TEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 414 GNISFLDAIIMPDNHLEG 431
                     +  N L+G
Sbjct: 269 AGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 6e-08
 Identities = 41/261 (15%), Positives = 79/261 (30%), Gaps = 11/261 (4%)

Query: 50  LESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEI 109
            + + L GN+ +    +S  A  +L  L L +                  +     + ++
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 110 DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQG 169
            ++  P  + GL +L  L L   R               +L+ LYL+ N        T  
Sbjct: 94  RSV-DPATFHGLGRLHTLHLD--RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT-- 148

Query: 170 LCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLL 229
             +L +L  L++  N            L SL  L +  N++   +       L  +  L 
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLY 207

Query: 230 LSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV 289
           L  N+     +       +   +   +N      R        +     S +++   +P 
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 290 EIGKVLPNLGFLSITFNAFNG 310
                L       +  N   G
Sbjct: 267 R----LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 48/285 (16%), Positives = 88/285 (30%), Gaps = 34/285 (11%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFN 61
           +  + + L  N  ++   +S     +L  L L  N L          +            
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL--------- 82

Query: 62  SSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGL 121
                         +L+L       + D      L  L  L +    +  L         
Sbjct: 83  -------------EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL- 128

Query: 122 RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181
             L++L L    ++       +     +L  L+L  N  +           L  L  L +
Sbjct: 129 AALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLL 184

Query: 182 DRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISL 241
            +N      P    +L  L  L++  N L+  L +  L  L +++ L L++N +      
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 242 EPFFNY-SKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQG 285
            P + +  K +   +    S P RL            ++ N LQG
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRL-----AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 41/218 (18%), Positives = 62/218 (28%), Gaps = 44/218 (20%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGN 58
           L  L  L L              GL++L+ L L  N L+   +     +  L  L L GN
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 59  KFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY 118
           + +S    +   L SL +L L                L  L  L +  N +  L      
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPT---- 218

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELV---- 174
                                   ++    +L+ L L  N +          C       
Sbjct: 219 -----------------------EALAPLRALQYLRLNDNPW-------VCDCRARPLWA 248

Query: 175 HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG 212
            LQ      ++   SLP     L    +  +  N L G
Sbjct: 249 WLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 3e-13
 Identities = 49/267 (18%), Positives = 87/267 (32%), Gaps = 20/267 (7%)

Query: 148 PSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPD 207
           P    L L++N    T         L +L  L +  N      P   A L  L  L++  
Sbjct: 31  PDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 208 NQLTGNLSSSPLMHLTSIEVLLLSNNHFQ--IPISLEPFFNYSKLKIFHANNSLSGPFRL 265
           NQL       P     +++ L +  N                  +++       SG    
Sbjct: 89  NQLK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 266 PTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYL 325
             +  K +  + I+   +   IP  +    P+L  L +  N       +S   +N+L  L
Sbjct: 145 AFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 326 DLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIG-- 383
            LS N ++            +L  L L+NN L         +   ++ + L  N+     
Sbjct: 201 GLSFNSISAVDNGS-LANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIG 258

Query: 384 ----DIPESLSNCSSLQGLYISDNDIT 406
                 P   +  +S  G+ +  N + 
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.3 bits (155), Expect = 5e-12
 Identities = 50/279 (17%), Positives = 90/279 (32%), Gaps = 26/279 (9%)

Query: 175 HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH 234
               L +  N           NL +L  L + +N+++     +    L  +E L LS N 
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQ 90

Query: 235 FQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKV 294
            +    L      +  ++    N ++   +        +I +++  N L           
Sbjct: 91  LK---ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL--KSSGIENGA 145

Query: 295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN 354
              +  LS    A         G   SL  L L  N++T      L  G  NL  L LS 
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSF 204

Query: 355 NSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIG 414
           NS+         N   L+ L+   N+ +  +P  L++   +Q +Y+ +N+I+        
Sbjct: 205 NSISAVDNGSLANTPHLRELH-LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 415 NISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
                              P    +      + L  N +
Sbjct: 264 P------------------PGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 1e-10
 Identities = 43/213 (20%), Positives = 75/213 (35%), Gaps = 28/213 (13%)

Query: 264 RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLI 323
           ++P     +   LD+  NK+      +    L NL  L +  N  +   P +F  +  L 
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 324 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKN----------------- 366
            L LS NQL  E+PE +      L         ++  +F+  N                 
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 367 ------NLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLD 420
                  + KL  + +   + I  IP+ L    SL  L++  N IT      +  ++ L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 421 AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
            + +  N +            +L  L L+ N +
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 43/242 (17%), Positives = 81/242 (33%), Gaps = 16/242 (6%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
           L NL  L L +N  +     + A L  L+ L L+ N+L+  +  +    L+ L +  N+ 
Sbjct: 54  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEI 112

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGT-FDVQELDSLSNLEELDMSDNEIDNLVVPKDYR 119
                S    L+ +  + L     K +  +      +  L  + ++D  I  +       
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI----PQG 168

Query: 120 GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDL 179
               L  L L G +I           S   L  L     +F        G          
Sbjct: 169 LPPSLTELHLDGNKITK-----VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 223

Query: 180 YIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTG-----NLSSSPLMHLTSIEVLLLSNNH 234
               N+ +  +P  LA+   ++V+++ +N ++                 S   + L +N 
Sbjct: 224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

Query: 235 FQ 236
            Q
Sbjct: 284 VQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 1e-08
 Identities = 52/238 (21%), Positives = 88/238 (36%), Gaps = 16/238 (6%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN--IEGMNMLESLDLSGNK 59
            +   LDL +N            L +L  L L  N++          +  LE L LS N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 60  FNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNL-VVPKDY 118
                      L  LR      T  + +      + L+ +  +++  N + +  +    +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSV----FNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 119 RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQD 178
           +G++KL ++ ++   I    +     G  PSL  L+L  N    T      L  L +L  
Sbjct: 147 QGMKKLSYIRIADTNITTIPQ-----GLPPSLTELHLDGNKI--TKVDAASLKGLNNLAK 199

Query: 179 LYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQ 236
           L +  N         LAN   LR LH+ +N+L              I+V+ L NN+  
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNIS 255

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 7/133 (5%)

Query: 321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNH 380
            L  +  S+  L  ++P+ L     +   L L NN +         NL  L  L L  N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 381 FIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQL 440
                P + +    L+ LY+S N +          +  L    + +N +     S F  L
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGL 123

Query: 441 DYLEILDLSKNNI 453
           + + +++L  N +
Sbjct: 124 NQMIVVELGTNPL 136

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.5 bits (158), Expect = 2e-12
 Identities = 49/264 (18%), Positives = 87/264 (32%), Gaps = 9/264 (3%)

Query: 95  SLSNLEELDMSDNEID-NLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTL 153
               +  LD+S   +     +P     L  L FL + G+       +  +I     L  L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYL 106

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGN 213
           Y+   N +  +       ++  L  L    N   G+LP  +++L +L  +    N+++G 
Sbjct: 107 YITHTNVSGAIPDFL--SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 214 LSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNI 273
           +  S          + +S N     I                N        L    +   
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 274 IALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLT 333
                  +       V + K   NL  L +  N   G++P     +  L  L++S N L 
Sbjct: 225 KIHLAKNSLAFDLGKVGLSK---NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 334 GEIPEHLAMGCFNLEYLLLSNNSL 357
           GEIP+   +     +    +NN  
Sbjct: 282 GEIPQGGNLQ--RFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 52/267 (19%), Positives = 95/267 (35%), Gaps = 8/267 (2%)

Query: 173 LVHLQDLYIDRNDFIG--SLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLL 230
              + +L +   +      +P  LANL  L  L++             +  LT +  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 231 SNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVE 290
           ++ +    I        + + +  + N+LSG       S  N++ +    N++ G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 291 IGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 350
            G        ++I+ N   G IP +F ++N        N           +       + 
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH- 227

Query: 351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIP 410
                +       K      L  L+L  N   G +P+ L+    L  L +S N++ G IP
Sbjct: 228 --LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 411 TWIGNISFLDAIIMPDNHL--EGPIPS 435
              GN+   D     +N      P+P+
Sbjct: 286 QG-GNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 47/248 (18%), Positives = 96/248 (38%), Gaps = 9/248 (3%)

Query: 215 SSSPLMHLTSIEVLLLSNNHFQIPISLEP-FFNYSKLKIFH--ANNSLSGPFRLPTRSRK 271
           + +    + +++   LS  +   P  +     N   L   +    N+L GP         
Sbjct: 45  TDTQTYRVNNLD---LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQ 331
            +  L I++  + G IP  + ++   L  L  ++NA +G++P S   + +L+ +    N+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 332 LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSN 391
           ++G IP+           + +S N L G++     NL                     S+
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 392 CSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 451
            +          +        +G    L+ + + +N + G +P    QL +L  L++S N
Sbjct: 221 KN--TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 452 NIAGSLPS 459
           N+ G +P 
Sbjct: 279 NLCGEIPQ 286

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSI-NIEGMNMLESLDLSGNKF 60
            NL  LDL +N    ++   L  L  L +L++++N L G I     +   +    + NK 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 2/141 (1%)

Query: 314 SSFGDMNSLIYLDLSNNQLTG--EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKL 371
            +      +  LDLS   L     IP  LA   +     +   N+L G +      LT+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 372 KRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEG 431
             L +   +  G IP+ LS   +L  L  S N ++G++P  I ++  L  I    N + G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 432 PIPSEFCQLDYLEILDLSKNN 452
            IP  +     L        N
Sbjct: 164 AIPDSYGSFSKLFTSMTISRN 184

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 8e-05
 Identities = 51/319 (15%), Positives = 97/319 (30%), Gaps = 55/319 (17%)

Query: 20  SSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNL 79
            +      + NL L+   L                         I SSL  L  L  L +
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPY--------------------PIPSSLANLPYLNFLYI 83

Query: 80  MATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSK 139
                        +  L+ L  L ++   +   +     +                    
Sbjct: 84  GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-------------------- 123

Query: 140 VLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTS 199
                    +L TL    N    + T    +  L +L  +  D N   G++P    + + 
Sbjct: 124 -------IKTLVTLDFSYNAL--SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 200 LRV-LHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNS 258
           L   + +  N+LTG +  +      +       + +     +   F +    +  H   +
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFV---DLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 259 LSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGD 318
                       KN+  LD+  N++ G +P  + + L  L  L+++FN   G IP   G+
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP-QGGN 289

Query: 319 MNSLIYLDLSNNQLTGEIP 337
           +        +NN+     P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 29  KNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTF 88
           + L LA+  L    ++E + ++  LDLS N+  +       AL++LR L ++        
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP----PALAALRCLEVLQASDNALE 56

Query: 89  DVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGS-F 147
           +V  + +L  L+EL + +N +      +      +L  L+L G  +     +   +    
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 148 PSLKTL 153
           PS+ ++
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 53  LDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNL 112
           L L+      ++L  L  L  +  L+L     +         +L+ L  L++     + L
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDNAL 55

Query: 113 VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK 162
                   L +L+ L L   R++  +  +  + S P L  L L+ N+  +
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 311 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTK 370
           ++      +  + +LDLS+N+L    P   A+ C  +       +    +      NL +
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ----ASDNALENVDGVANLPR 66

Query: 371 LKRLNLDGNHFIG-DIPESLSNCSSLQGLYISDNDITG 407
           L+ L L  N        + L +C  L  L +  N +  
Sbjct: 67  LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 3e-07
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG----SIPSSFGDMNSLIYLDL 327
           +I +LDI   +L      E+  +L     + +            I S+     +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 328 SNNQLTGEIPEHLAMG----CFNLEYLLLSNN 355
            +N+L       +  G       ++ L L N 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 5e-07
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 319 MNSLIYLDLSNNQLTGEIPEHLAMG---CFNLEYLLLSNNSLQGQLFSK-----KNNLTK 370
            + L  L L++  ++      LA       +L  L LSNN L      +     +     
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 371 LKRLNLDGNHFIGDIPESL 389
           L++L L   ++  ++ + L
Sbjct: 428 LEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 2e-06
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 9/101 (8%)

Query: 321 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ----LFSKKNNLTKLKRLNL 376
            +  LD+   +L+      L       + + L +  L       + S       L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 377 DGNHFIGDIPESL-----SNCSSLQGLYISDNDITGSIPTW 412
             N         +     +    +Q L + +  +TG+    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 6e-06
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 12/90 (13%)

Query: 3  NLKFLDLSHNSFNNSVLSSLA-GLSSLKNLSLAYNRLEGSI------NIEGMNMLESLDL 55
          +++ LD+     +++  + L   L   + + L    L  +        +     L  L+L
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 56 SGNKFNSSILSSLTAL-----SSLRKLNLM 80
            N+     +  +          ++KL+L 
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 9e-06
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 50  LESLDLSGNKFNSSILSSL-TALSSLRKLNLMATGFKGTFD---VQELDSLSNLEELDMS 105
           ++SLD+   + + +  + L   L   + + L   G            L     L EL++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 106 DNEIDNLVVPKDYRGLR----KLRFLDLSG 131
            NE+ ++ V    +GL+    K++ L L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 98  NLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD--GSKVLHSIGSFPSLKTLYL 155
           +++ LD+   E+ +    +    L++ + + L    + +     +  ++   P+L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 156 KSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWC 193
           +SN           + + +      I +          
Sbjct: 63  RSNEL--GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 11/81 (13%)

Query: 2   SNLKFLDLSHNSFNNSVLSSLA----GLSSLKNLSLAYNRL--EGSINI-----EGMNML 50
           S L+ L L+    ++S  SSLA       SL+ L L+ N L   G + +     +   +L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 51  ESLDLSGNKFNSSILSSLTAL 71
           E L L    ++  +   L AL
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 1e-04
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 9/91 (9%)

Query: 335 EIPEHLAMGCFNLEYLLLSNNSLQGQ----LFSKKNNLTKLKRLNLDGNHFIGDIPESLS 390
           E+ + L      L  L L++  +       L +       L+ L+L  N         L 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 391 -----NCSSLQGLYISDNDITGSIPTWIGNI 416
                    L+ L + D   +  +   +  +
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 6e-04
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 23/101 (22%)

Query: 363 SKKNNLTKLKRLNLDGNHF----IGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISF 418
                 + L+ L L            +  +L    SL+ L +S+N +  +     G +  
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA-----GILQL 417

Query: 419 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
           ++++  P                 LE L L     +  +  
Sbjct: 418 VESVRQPGCL--------------LEQLVLYDIYWSEEMED 444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 53/308 (17%), Positives = 89/308 (28%), Gaps = 24/308 (7%)

Query: 94  DSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTL 153
           +   +LE L  S N +  L         + L+ L +    ++  S +   +         
Sbjct: 55  ELPPHLESLVASCNSLTEL-----PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ 109

Query: 154 YLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGN 213
             K      +        +   L+ L                      + ++P       
Sbjct: 110 LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYA 169

Query: 214 LSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNI 273
            ++S          L        I   L    N   L   +A+N+L         S + +
Sbjct: 170 DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL 229

Query: 274 IALDISYNKLQGHIPVEIGKVLPNLG--------FLSITFNAFNGSIPSSFGDMNSLIYL 325
              D     L           +                  NA +  I S      SL  L
Sbjct: 230 NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 289

Query: 326 DLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHF--IG 383
           ++SNN+L  E+P         LE L+ S N L             LK+L+++ N      
Sbjct: 290 NVSNNKLI-ELPALPP----RLERLIASFNHLA----EVPELPQNLKQLHVEYNPLREFP 340

Query: 384 DIPESLSN 391
           DIPES+ +
Sbjct: 341 DIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSL-AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNK 59
             +L+ L++S+N      L  L A    L+ L  ++N L   +  E    L+ L +  N 
Sbjct: 283 PPSLEELNVSNNK-----LIELPALPPRLERLIASFNHLA-EVP-ELPQNLKQLHVEYNP 335

Query: 60  FNSSILSSLTALSSLR 75
                     ++  LR
Sbjct: 336 L-REFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 57/349 (16%), Positives = 114/349 (32%), Gaps = 35/349 (10%)

Query: 97  SNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK 156
               EL++++  + +L  P+       L  L  S   + +  +         SLK+L + 
Sbjct: 38  RQAHELELNNLGLSSL--PEL---PPHLESLVASCNSLTELPE------LPQSLKSLLVD 86

Query: 157 SNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSS 216
           +NN          L         Y+  ++        L N + L+++ V +N L      
Sbjct: 87  NNNLKALSDLPPLLE--------YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL 138

Query: 217 SPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIAL 276
            P +   +         + Q+    E         I+  NNSL     LP      +   
Sbjct: 139 PPSLEFIAA-------GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 191

Query: 277 DISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEI 336
           +I     +      +  +  +   L    +        +  D       +L  +    ++
Sbjct: 192 NILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 251

Query: 337 PEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ 396
            E++  G   L   L   N+   ++ S  +    L+ LN+  N  + ++P        L+
Sbjct: 252 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPR---LE 307

Query: 397 GLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI 445
            L  S N +   +P    N+  L    +  N L    P     ++ L +
Sbjct: 308 RLIASFNHLA-EVPELPQNLKQLH---VEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 231 SNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVE 290
            +  F                  +  N+ S   R       ++  L++S NKL      E
Sbjct: 244 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----E 298

Query: 291 IGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 350
           +  + P L  L  +FN     +P       +L  L +  N L  E P+       ++E L
Sbjct: 299 LPALPPRLERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPE----SVEDL 349

Query: 351 LLSN 354
            +++
Sbjct: 350 RMNS 353

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 30/178 (16%), Positives = 65/178 (36%), Gaps = 8/178 (4%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335
           ++     L   +P ++ K   +   L ++ N       ++      L  L+L   +    
Sbjct: 15  VNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---- 66

Query: 336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL 395
           + +    G   +   L  +++    L      L  L  L++  N        +L     L
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 396 QGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 453
           Q LY+  N++    P  +     L+ + + +N+L          L+ L+ L L +N++
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 35/223 (15%), Positives = 66/223 (29%), Gaps = 12/223 (5%)

Query: 25  LSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGF 84
           ++S   ++     L  ++  +       L LS N   +  L++L   + L +LNL     
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 85  KGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI 144
                   L  L  L+        +  L        +  + F  L+ L +        ++
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL-------GAL 120

Query: 145 GSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLH 204
                L+ LYLK N               +      +  N+        L  L +L  L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKL--SLANNNLTELPAGLLNGLENLDTLL 178

Query: 205 VPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNY 247
           + +N L              +    L  N +     +  F  +
Sbjct: 179 LQENSLYT--IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW 219

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 34/191 (17%), Positives = 53/191 (27%), Gaps = 6/191 (3%)

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKN 272
           NL++ P        +L LS N      SL     Y++L   +    L        +    
Sbjct: 21  NLTALPPDLPKDTTILHLSENLLYT-FSLATLMPYTRLTQLN----LDRAELTKLQVDGT 75

Query: 273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332
           +  L            + +         +         S+P         +         
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135

Query: 333 TGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNC 392
              +P  L      LE L L+NN+L        N L  L  L L  N     IP+     
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194

Query: 393 SSLQGLYISDN 403
             L   ++  N
Sbjct: 195 HLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 31/210 (14%)

Query: 175 HLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNH 234
               L++  N         L   T L  L++   +LT       L  L ++++    +++
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL----SHN 87

Query: 235 FQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKV 294
               + L      +   +  + N L+       R    +  L +  N+    +P  +   
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTP 146

Query: 295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN 354
            P L  LS+  N            + +L  L L  N L   IP+                
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF-------------- 191

Query: 355 NSLQGQLFSKKNNLTKLKRLNLDGNHFIGD 384
                           L    L GN ++ +
Sbjct: 192 -----------FGSHLLPFAFLHGNPWLCN 210

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 276 LDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 335
           LD++   L   +   +  +   +       +  +  +   F     + ++DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVS 61

Query: 336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNC 392
               +   C  L+ L L    L   + +     + L RLNL G     +        
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 5/142 (3%)

Query: 52  SLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDN 111
           +LDL+G   +  +   L +   +               + E  S   ++ +D+S++ I+ 
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVI---AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 112 LVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLC 171
             +        KL+ L L GLR+ D   +++++    +L  L L   +          L 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 172 ELVHLQDLYIDRNDFIGSLPWC 193
               L +L +            
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQ 140

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 50/240 (20%), Positives = 89/240 (37%), Gaps = 31/240 (12%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
              ++ +DLS++    S L  +  LS                       L++L L G + 
Sbjct: 45  PFRVQHMDLSNSVIEVSTLHGI--LSQCSK-------------------LQNLSLEGLRL 83

Query: 61  NSSILSSLTALSSLRKLNLMA-TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDY- 118
           +  I+++L   S+L +LNL   +GF        L S S L+EL++S          +   
Sbjct: 84  SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 143

Query: 119 -RGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQ 177
                 +  L+LSG R       L ++            S++        Q   +L +LQ
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203

Query: 178 DLYIDRNDFI-GSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHL-TSIEVLLLSNNHF 235
            L + R   I       L  + +L+ L      + G +    L  L  ++  L ++ +HF
Sbjct: 204 HLSLSRCYDIIPETLLELGEIPTLKTLQ-----VFGIVPDGTLQLLKEALPHLQINCSHF 258

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 30/176 (17%), Positives = 52/176 (29%), Gaps = 5/176 (2%)

Query: 213 NLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKN 272
            L   P         LLL++N      S   F     L       +             +
Sbjct: 19  GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78

Query: 273 IIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQL 332
            I            I  ++   L  L  L++  N  +  +P SF  +NSL  L+L++N  
Sbjct: 79  HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

Query: 333 TGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPES 388
                              L+  + +    SK   +  ++  +L  + F      S
Sbjct: 139 NCNCHLAWFAEWLRK--KSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 3/149 (2%)

Query: 311 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTK 370
            IP           L L++N+L     + L     +L  L L  N L G   +     + 
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 371 LKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE 430
           ++ L L  N       +       L+ L + DN I+  +P    +++ L ++ +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 431 GPIPSEFCQLDYLEILDLSKNNIAGSLPS 459
                     ++L    L+        PS
Sbjct: 140 C-NCHLAWFAEWLRKKSLNGGAARCGAPS 167

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 6e-06
 Identities = 32/218 (14%), Positives = 77/218 (35%), Gaps = 15/218 (6%)

Query: 23  AGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMAT 82
             L++   ++   + +  ++    ++ + +L   G    +  +  +  L++L  L L   
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 83  GFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH 142
                  ++ L  ++ LE        +  +   +  + L            +   S +  
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 143 SIGSFPSLKTLYL--------KSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCL 194
                  +  +            +     V+    L  L  L  L  D N      P  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 195 ANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSN 232
           A+L +L  +H+ +NQ++     SPL + +++ ++ L+N
Sbjct: 192 ASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 34/266 (12%), Positives = 65/266 (24%), Gaps = 50/266 (18%)

Query: 89  DVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 148
            +    +L+N  ++    + + + V   D   L  +  L   G  +      +  +    
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTT----IEGVQYLN 63

Query: 149 SLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDN 208
           +L  L LK N                        +N    +    +  L           
Sbjct: 64  NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 209 QLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTR 268
            L G  +   L                   I+            + +  +       P  
Sbjct: 124 PLAGLSNLQVLYL-------------DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLA 170

Query: 269 SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLS 328
           +   +  L    NK+    P                              + +LI + L 
Sbjct: 171 NLSKLTTLKADDNKISDISP---------------------------LASLPNLIEVHLK 203

Query: 329 NNQLTGEIPEHLAMGCFNLEYLLLSN 354
           NNQ++   P        NL  + L+N
Sbjct: 204 NNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 32/230 (13%), Positives = 76/230 (33%), Gaps = 21/230 (9%)

Query: 173 LVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSN 232
           L +   +   +++   ++    A+L  +  L      +T   +   + +L ++  L L +
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 233 NHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG 292
           N       L+     ++L++                  ++I  LD++  ++    P+   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPL----KNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 293 KVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 352
             L  L          +     +     S+    +S+                 L  L  
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLA--------NLSKLTTLKA 180

Query: 353 SNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISD 402
            +N +     S   +L  L  ++L  N      P  L+N S+L  + +++
Sbjct: 181 DDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 9e-04
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 3   NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLS 56
            L  L    N  ++  +S LA L +L  + L  N++     +   + L  + L+
Sbjct: 174 KLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 10  SHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLT 69
           S  +   S L+ LA LS L  L    N++     +  +  L  + L  N+ +   +S L 
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD--VSPLA 214

Query: 70  ALSSLRKLNL 79
             S+L  + L
Sbjct: 215 NTSNLFIVTL 224

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 18/136 (13%), Positives = 41/136 (30%), Gaps = 3/136 (2%)

Query: 325 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGD 384
           L  + +    +   HL       E  + +   LQ         L +L+ L +  +     
Sbjct: 13  LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 385 IPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPI-PSEFCQLDYL 443
            P++      L  L +S N +  S+         L  +++  N L          + +  
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE 130

Query: 444 EILDLSKNNIAGSLPS 459
            +  + +  +      
Sbjct: 131 GLGGVPEQKLQCHGQG 146

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 34/324 (10%), Positives = 81/324 (25%), Gaps = 29/324 (8%)

Query: 90  VQELDSLSNLEELDMSDNEIDNL---VVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGS 146
              L    +++E+ +S N I       + ++    + L   + S +        +     
Sbjct: 24  FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR 83

Query: 147 FPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVP 206
              L    LK         +            +            +   N    +     
Sbjct: 84  L--LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 207 DNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLP 266
              L     +    +   +  ++   N  +     E    +   ++ H    +    R  
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 267 TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLD 326
                 +  L          +                  +  + ++  +     +L  L 
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDN------------TFTHLGSSALAIALKSWPNLRELG 249

Query: 327 LSNNQLTGEIPEHLAMGCF-----NLEYLLLSNNSLQGQLFSK-----KNNLTKLKRLNL 376
           L++  L+      +           L+ L L  N ++              +  L  L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 377 DGNHF--IGDIPESLSNCSSLQGL 398
           +GN F    D+ + +    S +G 
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGR 333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 20/141 (14%), Positives = 51/141 (36%), Gaps = 8/141 (5%)

Query: 314 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR 373
           + + +      LDL   ++   + E+L       + +  S+N ++         L +LK 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKT 67

Query: 374 LNLDGNHFIGDIPESLSNCSSLQGLYISDNDITG----SIPTWIGNISFLDAIIMPDNHL 429
           L ++ N               L  L +++N +           + ++++L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 430 EGPIPSEFCQLDYLEILDLSK 450
           +        ++  + +LD  K
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 366 NNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMP 425
            N  + + L+L G   I  I    +       +  SDN+I          +  L  +++ 
Sbjct: 15  TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVN 71

Query: 426 DNHLEGPIPSEFCQLDYLEILDLSKNNI 453
           +N +          L  L  L L+ N++
Sbjct: 72  NNRICRIGEGLDQALPDLTELILTNNSL 99

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 24/191 (12%), Positives = 59/191 (30%), Gaps = 16/191 (8%)

Query: 1   LSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKF 60
            +     +L   S  ++V  +   L+S+  +    + ++    I+ +  +  L L+GNK 
Sbjct: 23  FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80

Query: 61  NSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSN--------LEELDMSDNEIDNL 112
                 +         L+        +    +     +        +  L          
Sbjct: 81  TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140

Query: 113 VVPKDYRGLRKLRFLDLSGLRIRDGSKV--LHSIGSFPSLKTLYLKSNNFAKTVTTTQGL 170
           +       +  L  L        + +++  +  +     L+ LYL  N+     +  + L
Sbjct: 141 LGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI----SDLRAL 196

Query: 171 CELVHLQDLYI 181
             L +L  L +
Sbjct: 197 AGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 21/209 (10%)

Query: 146 SFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHV 205
           +F       LK  +    VT      EL  +  +  + +D        +  L ++  L +
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFL 75

Query: 206 PDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRL 265
             N+LT     + L +               +  +     +  K      + SL      
Sbjct: 76  NGNKLTDIKPLANLKN----------LGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 266 PTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYL 325
                 ++  L+  Y        + +   L  L  LS+  N  +  +P     +  L  L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183

Query: 326 DLSNNQLTGEIPEHLAMGCFNLEYLLLSN 354
            LS N ++      LA G  NL+ L L +
Sbjct: 184 YLSKNHISD--LRALA-GLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 25/210 (11%), Positives = 61/210 (29%), Gaps = 2/210 (0%)

Query: 122 RKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYI 181
           R    L     ++R   K   +   F  L+ + +  N+  + +            +    
Sbjct: 29  RNAIELRFVLTKLRVIQK--GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86

Query: 182 DRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISL 241
             N+ +   P    NL +L+ L + +  +        +  L  + + +  N +       
Sbjct: 87  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 146

Query: 242 EPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFL 301
                  +  I   N +          +   +  L++S N     +P ++         L
Sbjct: 147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206

Query: 302 SITFNAFNGSIPSSFGDMNSLIYLDLSNNQ 331
            I+    +        ++  L      N +
Sbjct: 207 DISRTRIHSLPSYGLENLKKLRARSTYNLK 236

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	459
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.73

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.6e-25  Score=204.23  Aligned_cols=353  Identities=22%  Similarity=0.294  Sum_probs=213.1

Q ss_pred             cccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccC
Q 039778           35 YNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVV  114 (459)
Q Consensus        35 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  114 (459)
                      ...+.+......+.+|++|+++++.+++  ...+..+++|++|++++|.+. .++  .+..+++|++|++++|.+..+. 
T Consensus        31 ~~~~~~~~~~~~l~~l~~L~l~~~~I~~--l~gl~~L~nL~~L~Ls~N~l~-~l~--~l~~L~~L~~L~L~~n~i~~i~-  104 (384)
T d2omza2          31 KTNVTDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLT-DIT--PLKNLTKLVDILMNNNQIADIT-  104 (384)
T ss_dssp             CSSTTSEECHHHHTTCCEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             CCCCCCccCHHHhCCCCEEECCCCCCCC--ccccccCCCCCEEeCcCCcCC-CCc--cccCCccccccccccccccccc-
Confidence            3333333334455566666666666643  234566666666666666655 222  3566666666666666665542 


Q ss_pred             cccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhc
Q 039778          115 PKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCL  194 (459)
Q Consensus       115 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  194 (459)
                        .++.+++|+.+++.++.+.+.   . .......+.......+.+.......  ..............     .....+
T Consensus       105 --~l~~l~~L~~L~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~  171 (384)
T d2omza2         105 --PLANLTNLTGLTLFNNQITDI---D-PLKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFGNQV-----TDLKPL  171 (384)
T ss_dssp             --GGTTCTTCCEEECCSSCCCCC---G-GGTTCTTCSEEEEEEEEECCCGGGT--TCTTCSEEEEEESC-----CCCGGG
T ss_pred             --ccccccccccccccccccccc---c-ccccccccccccccccccccccccc--cccccccccccccc-----chhhhh
Confidence              356666677776666655442   1 1223334444444444332221110  00011111111111     111122


Q ss_pred             cCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCcc
Q 039778          195 ANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNII  274 (459)
Q Consensus       195 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  274 (459)
                      ...+.........+...   .......+++++.+.++++.+....                          ....+++|+
T Consensus       172 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~l~l~~n~i~~~~--------------------------~~~~~~~L~  222 (384)
T d2omza2         172 ANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISDIT--------------------------PLGILTNLD  222 (384)
T ss_dssp             TTCTTCCEEECCSSCCC---CCGGGGGCTTCSEEECCSSCCCCCG--------------------------GGGGCTTCC
T ss_pred             ccccccccccccccccc---cccccccccccceeeccCCccCCCC--------------------------cccccCCCC
Confidence            23333334444333322   1334456666777777666543111                          122345677


Q ss_pred             EEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccc
Q 039778          275 ALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSN  354 (459)
Q Consensus       275 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  354 (459)
                      +|+++++.+. .++ . ...+++|+.+++++|.+.+.  ..+..+++|+.|+++++.+. .++.  +..++.++.+.+..
T Consensus       223 ~L~l~~n~l~-~~~-~-l~~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~~~l~-~~~~--~~~~~~l~~l~~~~  294 (384)
T d2omza2         223 ELSLNGNQLK-DIG-T-LASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNE  294 (384)
T ss_dssp             EEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCS
T ss_pred             EEECCCCCCC-Ccc-h-hhcccccchhccccCccCCC--CcccccccCCEeeccCcccC-CCCc--cccccccccccccc
Confidence            7777777766 333 2 23378888888888887643  34777889999999988887 4443  34588899999999


Q ss_pred             cccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCc
Q 039778          355 NSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIP  434 (459)
Q Consensus       355 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  434 (459)
                      |.+.+  +..+..+++++.|++++|.+.+..  .+..+++|++|++++|+++ .++ .+..+++|+.|++++|++++ ++
T Consensus       295 n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~-l~  367 (384)
T d2omza2         295 NQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISD-LT  367 (384)
T ss_dssp             SCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCB-CG
T ss_pred             ccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCC-Ch
Confidence            88875  345677889999999999888653  3778899999999999887 444 58889999999999999984 34


Q ss_pred             hhhcCCCcccEEeccCC
Q 039778          435 SEFCQLDYLEILDLSKN  451 (459)
Q Consensus       435 ~~~~~~~~L~~L~l~~~  451 (459)
                      . +.++++|+.|+|++|
T Consensus       368 ~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         368 P-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             G-GTTCTTCSEEECCCE
T ss_pred             h-hccCCCCCEeeCCCC
Confidence            2 788999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3.1e-25  Score=202.31  Aligned_cols=342  Identities=25%  Similarity=0.302  Sum_probs=231.1

Q ss_pred             CCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEE
Q 039778           24 GLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELD  103 (459)
Q Consensus        24 ~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  103 (459)
                      .+.+|++|+++++.+.+...+..+++|++|++++|++++..  .++++++|++|++++|.+.. +  ..+..+++|+.++
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~-i--~~l~~l~~L~~L~  116 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-I--TPLANLTNLTGLT  116 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-C--GGGTTCTTCCEEE
T ss_pred             HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccc-c--ccccccccccccc
Confidence            45689999999998887777888999999999999887533  48899999999999998763 2  2477889999999


Q ss_pred             CcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccc
Q 039778          104 MSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDR  183 (459)
Q Consensus       104 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  183 (459)
                      ++++.+.+..   .......+.......+.+...  .....................       ..+.............
T Consensus       117 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  184 (384)
T d2omza2         117 LFNNQITDID---PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDL-------KPLANLTTLERLDISS  184 (384)
T ss_dssp             CCSSCCCCCG---GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEESCCCC-------GGGTTCTTCCEEECCS
T ss_pred             cccccccccc---ccccccccccccccccccccc--ccccccccccccccccccchh-------hhhccccccccccccc
Confidence            9888877653   234445555555555544332  111111111111111111111       1122233333334333


Q ss_pred             cccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCc
Q 039778          184 NDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPF  263 (459)
Q Consensus       184 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  263 (459)
                      +...  ....+..++.++.++++++.+.+ +  .....+++|+.+++++|.+....                        
T Consensus       185 ~~~~--~~~~~~~l~~~~~l~l~~n~i~~-~--~~~~~~~~L~~L~l~~n~l~~~~------------------------  235 (384)
T d2omza2         185 NKVS--DISVLAKLTNLESLIATNNQISD-I--TPLGILTNLDELSLNGNQLKDIG------------------------  235 (384)
T ss_dssp             SCCC--CCGGGGGCTTCSEEECCSSCCCC-C--GGGGGCTTCCEEECCSSCCCCCG------------------------
T ss_pred             cccc--cccccccccccceeeccCCccCC-C--CcccccCCCCEEECCCCCCCCcc------------------------
Confidence            3322  22344566778888888877663 2  23456677888888777554211                        


Q ss_pred             ccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhc
Q 039778          264 RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG  343 (459)
Q Consensus       264 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  343 (459)
                        .+..+++|+.++++++.+.+ ++.  ...+++|+.++++++.+...  ..+..++.++.+.+.+|.+. .++.  +..
T Consensus       236 --~l~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~-~~~~--~~~  305 (384)
T d2omza2         236 --TLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLE-DISP--ISN  305 (384)
T ss_dssp             --GGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCS-CCGG--GGG
T ss_pred             --hhhcccccchhccccCccCC-CCc--ccccccCCEeeccCcccCCC--Cccccccccccccccccccc-cccc--cch
Confidence              12345678888888887764 332  23378899999988888643  34777888999999999887 3332  445


Q ss_pred             ccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEE
Q 039778          344 CFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAII  423 (459)
Q Consensus       344 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  423 (459)
                      ++++++|++++|++.+..  .+..+++|++|++++|++++. + .+..+++|++|++++|++.+..|  +.++++|+.|+
T Consensus       306 ~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~  379 (384)
T d2omza2         306 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLG  379 (384)
T ss_dssp             CTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEE
T ss_pred             hcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEee
Confidence            889999999999988643  477889999999999988753 3 58889999999999999984433  78899999999


Q ss_pred             cCCC
Q 039778          424 MPDN  427 (459)
Q Consensus       424 l~~~  427 (459)
                      |++|
T Consensus       380 L~~N  383 (384)
T d2omza2         380 LNDQ  383 (384)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            9986

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1e-24  Score=192.48  Aligned_cols=183  Identities=32%  Similarity=0.537  Sum_probs=137.3

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCC-cEEEccCCccccccchhHHhcccccce
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSL-IYLDLSNNQLTGEIPEHLAMGCFNLEY  349 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~L~~  349 (459)
                      ..|+.++++.|.+...+|..+.. ++.++.+++++|.+.+..+..+..+..+ +.+++.+|++++..+..+.  ......
T Consensus       125 ~~L~~l~l~~N~~~~~~p~~l~~-l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~--~l~~~~  201 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLNLAF  201 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG--GCCCSE
T ss_pred             hhhcccccccccccccCchhhcc-Ccccceeecccccccccccccccccccccccccccccccccccccccc--cccccc
Confidence            34444444444444455554443 6777777777777665566666666554 7788888888866555433  234557


Q ss_pred             eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778          350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL  429 (459)
Q Consensus       350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  429 (459)
                      +++..+...+..+..+..+++++.+++.+|.+.... ..+..+++|+.|++++|++++.+|+.+.++++|++|+|++|++
T Consensus       202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence            888888888778888888899999999999987554 4577888999999999999988999999999999999999999


Q ss_pred             cCCCchhhcCCCcccEEeccCCccc-cc-CC
Q 039778          430 EGPIPSEFCQLDYLEILDLSKNNIA-GS-LP  458 (459)
Q Consensus       430 ~~~~~~~~~~~~~L~~L~l~~~~~~-~~-~p  458 (459)
                      ++.+|. +.++++|+.+++++|+.. |. +|
T Consensus       281 ~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         281 CGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             EEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred             cccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence            988885 578899999999999854 43 55

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=5.8e-24  Score=187.58  Aligned_cols=186  Identities=24%  Similarity=0.399  Sum_probs=154.4

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  350 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  350 (459)
                      ++|++|++++|.+.+..+.. ....+.|+.+++++|.+....+..+..++.++.+++++|.+.+.+|..+......++.+
T Consensus       101 ~~L~~L~Ls~N~l~~~~~~~-~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l  179 (313)
T d1ogqa_         101 TQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM  179 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred             cccchhhhcccccccccccc-ccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccc
Confidence            33444444444444333333 33489999999999999888889999999999999999999888887776533445899


Q ss_pred             eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      .+++|++++..+..+..+. ...+++.++...+..+..+..+++++.+++.+|.+.+.+ +.+..+++|+.|++++|+++
T Consensus       180 ~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~  257 (313)
T d1ogqa_         180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCE
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeec
Confidence            9999999988887777665 457999999998888888889999999999999998554 46788899999999999999


Q ss_pred             CCCchhhcCCCcccEEeccCCcccccCCC
Q 039778          431 GPIPSEFCQLDYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       431 ~~~~~~~~~~~~L~~L~l~~~~~~~~~p~  459 (459)
                      +.+|..+.++++|+.|+|++|+++|++|+
T Consensus       258 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            99999999999999999999999999995

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.1e-22  Score=178.68  Aligned_cols=81  Identities=23%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             CcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccE
Q 039778          148 PSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEV  227 (459)
Q Consensus       148 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  227 (459)
                      +++++|++++|++......  .+..+++|++|++++|.+....+..|..++.|++|+++++++. .++.   ...+.+..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~--~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~---~~~~~l~~  104 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE---KMPKTLQE  104 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCS---SCCTTCCE
T ss_pred             CCCCEEECcCCcCCCcChh--HhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCcc---chhhhhhh
Confidence            4567777777766554432  3556666777777776666655666666667777777666654 2321   12234555


Q ss_pred             EEeecce
Q 039778          228 LLLSNNH  234 (459)
Q Consensus       228 L~l~~~~  234 (459)
                      +...++.
T Consensus       105 L~~~~n~  111 (305)
T d1xkua_         105 LRVHENE  111 (305)
T ss_dssp             EECCSSC
T ss_pred             hhccccc
Confidence            5555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=2.3e-21  Score=170.11  Aligned_cols=141  Identities=22%  Similarity=0.255  Sum_probs=79.5

Q ss_pred             CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceE
Q 039778          295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL  374 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  374 (459)
                      +++|+.++++++.+.... ..  .+++|+.|++.+|.... .+...+..++.+++|++++|.+.+..+..+..+++|++|
T Consensus       149 l~~L~~l~l~~n~l~~l~-~~--~~~~L~~L~l~~n~~~~-~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L  224 (305)
T d1xkua_         149 MKKLSYIRIADTNITTIP-QG--LPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  224 (305)
T ss_dssp             CTTCCEEECCSSCCCSCC-SS--CCTTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             ccccCccccccCCccccC-cc--cCCccCEEECCCCcCCC-CChhHhhccccccccccccccccccccccccccccceee
Confidence            344444444444443221 11  13456666666666552 333334456666666666666666555666666777777


Q ss_pred             EccCCcccCCCcccccccCCCcEEEcccccccCCCccc------ccCcccccEEEcCCCccc--CCCchhhcCC
Q 039778          375 NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTW------IGNISFLDAIIMPDNHLE--GPIPSEFCQL  440 (459)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~--~~~~~~~~~~  440 (459)
                      ++++|++. .+|.++..+++|++|++++|+++......      ....++|+.|+|++|++.  ...|.+|.-+
T Consensus       225 ~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         225 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             eccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccc
Confidence            77777665 34556666777777777777666322222      224567777777777664  2344444433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.1e-22  Score=173.57  Aligned_cols=143  Identities=23%  Similarity=0.262  Sum_probs=93.1

Q ss_pred             CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceE
Q 039778          295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL  374 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  374 (459)
                      .++|+.++++++.+.......|..+++|++|++++|++. .++...+.++++|+.+++++|++++..+..|..+++|++|
T Consensus       128 ~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L  206 (284)
T d1ozna_         128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (284)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             hcccchhhhccccccccChhHhccccchhhcccccCccc-ccchhhhccccccchhhhhhccccccChhHhhhhhhcccc
Confidence            556666666666666555566666777777777777776 5666666667777777777777776667777777777777


Q ss_pred             EccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcC
Q 039778          375 NLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQ  439 (459)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  439 (459)
                      ++++|.+.+..+.++..+++|++|++++|++...-+ ...-...++......+.+.++.|..+..
T Consensus       207 ~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~~~C~~p~~l~g  270 (284)
T d1ozna_         207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG  270 (284)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             cccccccccccccccccccccCEEEecCCCCCCCcc-chHHHHHHHhCcCCCCceEeCCchHHcC
Confidence            777777776666677777777777777777653211 1111123444444455566556665543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.3e-21  Score=167.07  Aligned_cols=186  Identities=22%  Similarity=0.212  Sum_probs=137.6

Q ss_pred             CCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778          271 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  350 (459)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  350 (459)
                      ..+..+.+........++...+..+++|+.|+++++.+.......+...++|+.+++.+|.++ .++...+..+++|++|
T Consensus        80 ~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L  158 (284)
T d1ozna_          80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHL  158 (284)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             ccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhc
Confidence            344444443332222444444555888999999998887777777888888999999999887 7777777778889999


Q ss_pred             eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      ++++|++....+.+|..+++|+++++.+|.+.+..+.+|..+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus       159 ~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            99999888777788888889999999999888877888888889999999999988777778888889999999998887


Q ss_pred             CCCchhhcCCCcccEEeccCCcccccCC
Q 039778          431 GPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       431 ~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      +. .....-...++......+++.++.|
T Consensus       239 C~-C~~~~l~~~l~~~~~~~~~~~C~~p  265 (284)
T d1ozna_         239 CD-CRARPLWAWLQKFRGSSSEVPCSLP  265 (284)
T ss_dssp             CS-GGGHHHHHHHHHCCSEECCCBEEES
T ss_pred             CC-ccchHHHHHHHhCcCCCCceEeCCc
Confidence            43 2211112344555555566665554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.4e-20  Score=159.65  Aligned_cols=180  Identities=25%  Similarity=0.262  Sum_probs=154.4

Q ss_pred             CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccce
Q 039778          270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY  349 (459)
Q Consensus       270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  349 (459)
                      .+++++|++++|.+. .++...+..+++|++|++++|.+...  ..+..+++|+.|++++|++. ..+. .+..+++|+.
T Consensus        30 p~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~Ls~N~l~-~~~~-~~~~l~~L~~  104 (266)
T d1p9ag_          30 PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTV  104 (266)
T ss_dssp             CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEECCSSCCS-SCCC-CTTTCTTCCE
T ss_pred             CcCCCEEECcCCcCC-CcCHHHhhcccccccccccccccccc--cccccccccccccccccccc-cccc-cccccccccc
Confidence            367999999999998 66666666699999999999988743  34567899999999999987 4444 3456899999


Q ss_pred             eeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcc
Q 039778          350 LLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHL  429 (459)
Q Consensus       350 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  429 (459)
                      |+++++.+.......+..++++++|++.+|.+....+..+..+++++.+++++|.+.+..+..+..+++|+.|+|++|++
T Consensus       105 L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCC
Confidence            99999999877778888899999999999999877777788889999999999999977777888999999999999999


Q ss_pred             cCCCchhhcCCCcccEEeccCCcccc
Q 039778          430 EGPIPSEFCQLDYLEILDLSKNNIAG  455 (459)
Q Consensus       430 ~~~~~~~~~~~~~L~~L~l~~~~~~~  455 (459)
                      + .+|..+..+++|+.|+|++|++.+
T Consensus       185 ~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         185 Y-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             C-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             c-ccChhHCCCCCCCEEEecCCCCCC
Confidence            8 889888899999999999999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.8e-19  Score=149.50  Aligned_cols=206  Identities=22%  Similarity=0.241  Sum_probs=161.9

Q ss_pred             CccccEEEeccccccCCc-ccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEE
Q 039778           25 LSSLKNLSLAYNRLEGSI-NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELD  103 (459)
Q Consensus        25 ~~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  103 (459)
                      ...+..++.+++.++..+ .+.  ++|++|+|++|.++...+..|.++++|++|++++|.+. .++  .+..+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~--~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE--CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc--cccccccccccc
Confidence            345556666666666522 232  57888999998888666677888999999999888876 343  356788999999


Q ss_pred             CcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccc
Q 039778          104 MSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDR  183 (459)
Q Consensus       104 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  183 (459)
                      +++|.+...  +..+..+++|+.|+++++.+...  ....+..+.+++.+.+++|.+......  .+..++.++.+++++
T Consensus        84 Ls~N~l~~~--~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~l~~L~l~~n~l~~l~~~--~~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          84 LSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSL--PLGALRGLGELQELYLKGNELKTLPPG--LLTPTPKLEKLSLAN  157 (266)
T ss_dssp             CCSSCCSSC--CCCTTTCTTCCEEECCSSCCCCC--CSSTTTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTT
T ss_pred             ccccccccc--cccccccccccccccccccccee--eccccccccccccccccccccceeccc--cccccccchhccccc
Confidence            999988776  66788899999999999887764  455667889999999999988765544  466788999999999


Q ss_pred             cccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeeccccc
Q 039778          184 NDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEP  243 (459)
Q Consensus       184 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  243 (459)
                      |++++..+..+..+++|++|++++|++. .++ ..+..+++|+.|++++|++..+....+
T Consensus       158 N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp-~~~~~~~~L~~L~L~~Np~~CdC~~~~  215 (266)
T d1p9ag_         158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIP-KGFFGSHLLPFAFLHGNPWLCNCEILY  215 (266)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC-TTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred             ccccccCccccccccccceeecccCCCc-ccC-hhHCCCCCCCEEEecCCCCCCCcchHH
Confidence            9998888888889999999999999987 664 456678999999999999876655443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-21  Score=183.07  Aligned_cols=402  Identities=16%  Similarity=0.098  Sum_probs=206.3

Q ss_pred             CCCcEEEccCCcccccchhh-hcCCccccEEEeccccccCC------cccccCccCceEEcCCCCCCcccccccc-----
Q 039778            2 SNLKFLDLSHNSFNNSVLSS-LAGLSSLKNLSLAYNRLEGS------INIEGMNMLESLDLSGNKFNSSILSSLT-----   69 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----   69 (459)
                      ++|++||++.+.+++..+.. +..++++|+|+|++|.+.+.      ..+..+++|++|++++|.+++.....+.     
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36788888888888765444 56678888888888876542      2356778888888888887654333332     


Q ss_pred             cCCCCcEEEccCCcceeee---ccccccCCCCCcEEECcccccCCccCccccc----CCCCCcEEecCCCccCCCCcccc
Q 039778           70 ALSSLRKLNLMATGFKGTF---DVQELDSLSNLEELDMSDNEIDNLVVPKDYR----GLRKLRFLDLSGLRIRDGSKVLH  142 (459)
Q Consensus        70 ~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~  142 (459)
                      ...+|++|++++|.+.+..   -...+..+++|++|++++|.+.+........    ..................     
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-----  156 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA-----  156 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-----
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchh-----
Confidence            2346888888777665221   1124556777777777777655432111100    011111222211111100     


Q ss_pred             cccCCCcccEEEccCCcccccccccccccCcccccEEEcccccccccc----chhc-cCCCCCcEEEcCCCcCcCcC---
Q 039778          143 SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSL----PWCL-ANLTSLRVLHVPDNQLTGNL---  214 (459)
Q Consensus       143 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l-~~~~~L~~L~l~~~~~~~~~---  214 (459)
                                         ........+.....++.+.++++...+..    ...+ ........+.+.++......   
T Consensus       157 -------------------~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~  217 (460)
T d1z7xw1         157 -------------------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD  217 (460)
T ss_dssp             -------------------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred             -------------------hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence                               00000111222333444444443322110    0011 11223445555554432110   


Q ss_pred             CCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCccccccchh---h
Q 039778          215 SSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVE---I  291 (459)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~  291 (459)
                      ....+...+.++.+.+.++...........                   .........++.+++++|.+.......   .
T Consensus       218 ~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~-------------------~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~  278 (460)
T d1z7xw1         218 LCGIVASKASLRELALGSNKLGDVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRV  278 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             ccccccccccccccchhhccccccccchhh-------------------ccccccccccccccccccccccccccccccc
Confidence            011223445556666655543211110000                   111223455666777666554222111   1


Q ss_pred             hhcCCCccEEEeecCcCCCCCCCc-----ccCCCCCcEEEccCCccccccchhH---Hhcccccceeecccccccccccc
Q 039778          292 GKVLPNLGFLSITFNAFNGSIPSS-----FGDMNSLIYLDLSNNQLTGEIPEHL---AMGCFNLEYLLLSNNSLQGQLFS  363 (459)
Q Consensus       292 ~~~~~~L~~L~L~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~i~~~~~~  363 (459)
                      ....+.++.++++++.+.+.....     ......|+.++++++.+++.....+   ....++|++|++++|++++....
T Consensus       279 l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~  358 (460)
T d1z7xw1         279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  358 (460)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             ccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccc
Confidence            123566777777776664321111     1223468888888887764433322   23456788888888887653222


Q ss_pred             ----ccc-cccCCceEEccCCcccCC----CcccccccCCCcEEEcccccccCCCcc----ccc-CcccccEEEcCCCcc
Q 039778          364 ----KKN-NLTKLKRLNLDGNHFIGD----IPESLSNCSSLQGLYISDNDITGSIPT----WIG-NISFLDAIIMPDNHL  429 (459)
Q Consensus       364 ----~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~-~~~~L~~L~l~~~~~  429 (459)
                          .+. ..+.|++|++++|++++.    ++..+..+++|++|++++|++.+....    .+. +...|+.|++.++.+
T Consensus       359 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             hhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence                222 356688888888887643    233455678888888888887654332    222 234688888888877


Q ss_pred             cCCCchhh----cCCCcccEE
Q 039778          430 EGPIPSEF----CQLDYLEIL  446 (459)
Q Consensus       430 ~~~~~~~~----~~~~~L~~L  446 (459)
                      .......+    .+.|+|+.|
T Consensus       439 ~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         439 SEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             CHHHHHHHHHHHHHCTTSEEE
T ss_pred             CHHHHHHHHHHHHhCCCCEEe
Confidence            64333322    355666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.1e-21  Score=177.13  Aligned_cols=243  Identities=19%  Similarity=0.077  Sum_probs=156.8

Q ss_pred             ccCCCCCcEEEcCCCcCcCcCC---CCc-ccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCC
Q 039778          194 LANLTSLRVLHVPDNQLTGNLS---SSP-LMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRS  269 (459)
Q Consensus       194 l~~~~~L~~L~l~~~~~~~~~~---~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  269 (459)
                      +.....++.+.++++.......   ... .........+.+..+..........                    ......
T Consensus       165 l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~--------------------~~~l~~  224 (460)
T d1z7xw1         165 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL--------------------CGIVAS  224 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH--------------------HHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhcc--------------------cccccc
Confidence            3445788899998876542110   011 1122345566666654331111000                    011223


Q ss_pred             CCCccEEEeccCcccccc----chhhhhcCCCccEEEeecCcCCCC----CCCcccCCCCCcEEEccCCccccccchhHH
Q 039778          270 RKNIIALDISYNKLQGHI----PVEIGKVLPNLGFLSITFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTGEIPEHLA  341 (459)
Q Consensus       270 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  341 (459)
                      .+.++.+.+.++...+..    ..........++.+++++|.+...    ....+...+.++.+++++|.+.+.....+.
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            467888888888654322    222233467899999999987643    223345678999999999998754444332


Q ss_pred             ----hcccccceeecccccccccccc----ccccccCCceEEccCCcccCCCcc----cc-cccCCCcEEEcccccccCC
Q 039778          342 ----MGCFNLEYLLLSNNSLQGQLFS----KKNNLTKLKRLNLDGNHFIGDIPE----SL-SNCSSLQGLYISDNDITGS  408 (459)
Q Consensus       342 ----~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~----~~-~~~~~L~~L~l~~~~~~~~  408 (459)
                          ...+.|+.+++++|.++.....    .+...++|++|+|++|++.+....    ++ ...+.|++|++++|++++.
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence                2346899999999988765433    334567899999999998654332    33 2456799999999999753


Q ss_pred             ----CcccccCcccccEEEcCCCcccCCCch----hhc-CCCcccEEeccCCccccc
Q 039778          409 ----IPTWIGNISFLDAIIMPDNHLEGPIPS----EFC-QLDYLEILDLSKNNIAGS  456 (459)
Q Consensus       409 ----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~-~~~~L~~L~l~~~~~~~~  456 (459)
                          +++.+..+++|++|+|++|++.+....    .+. +...|+.|++.+|.+..+
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence                344566779999999999998754333    333 334799999999998743

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.5e-17  Score=138.61  Aligned_cols=203  Identities=23%  Similarity=0.357  Sum_probs=153.4

Q ss_pred             EEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCccee
Q 039778            7 LDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKG   86 (459)
Q Consensus         7 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   86 (459)
                      ++++.+.+++..  .++.+++|++|++.+|.+.+..++.++++|++|++++|.++...  .+.++++|+++.+.++.+. 
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-   98 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-   98 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-
Confidence            345555555432  44567889999999998888777888999999999999886433  4888899999999888765 


Q ss_pred             eeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccc
Q 039778           87 TFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT  166 (459)
Q Consensus        87 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  166 (459)
                      .  ...+..+++|+.++++++.....   ..+...+.++.+.+..+.+...    ..+..+++|++|++.++.+....  
T Consensus        99 ~--i~~l~~l~~L~~l~l~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~--  167 (227)
T d1h6ua2          99 N--VSAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQITNI----SPLAGLTNLQYLSIGNAQVSDLT--  167 (227)
T ss_dssp             C--CGGGTTCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECCSSCCCCC----GGGGGCTTCCEEECCSSCCCCCG--
T ss_pred             c--ccccccccccccccccccccccc---chhccccchhhhhchhhhhchh----hhhccccccccccccccccccch--
Confidence            2  33577889999999988876654   3466778888888888776542    23567888999999888775432  


Q ss_pred             cccccCcccccEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeec
Q 039778          167 TQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSN  232 (459)
Q Consensus       167 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  232 (459)
                        .+..+++|++|++++|.+.+..  .+..+++|++|++++|+++ .+  ..+..+++|+.|++++
T Consensus       168 --~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt-~i--~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 --PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQIS-DV--SPLANTSNLFIVTLTN  226 (227)
T ss_dssp             --GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCC-BC--GGGTTCTTCCEEEEEE
T ss_pred             --hhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCC-CC--cccccCCCCCEEEeeC
Confidence              3677889999999998877543  3678889999999999877 34  2478889999998864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.3e-17  Score=139.00  Aligned_cols=186  Identities=24%  Similarity=0.397  Sum_probs=156.4

Q ss_pred             CCCcEEEccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccC
Q 039778            2 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMA   81 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   81 (459)
                      ++|+.|++.++.+++.  +.+..+++|++|++++|.+.+...+..+++|++++++++.++.  ...+.++++|+++.+++
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGGGTTCTTCCEEECTT
T ss_pred             CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccccccccccccccccc
Confidence            5789999999999864  4688999999999999999888889999999999999998864  34688999999999998


Q ss_pred             CcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCccc
Q 039778           82 TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFA  161 (459)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (459)
                      +....   ...+...+.++.+.++++.+...   ..+..+++|++|++.++.+...    ..+.++++|+.|++++|++.
T Consensus       117 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         117 TQITD---VTPLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVSDL----TPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             SCCCC---CGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccc---cchhccccchhhhhchhhhhchh---hhhccccccccccccccccccc----hhhcccccceecccCCCccC
Confidence            87652   23567789999999999887664   4577889999999999987653    34788999999999999886


Q ss_pred             ccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCC
Q 039778          162 KTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPD  207 (459)
Q Consensus       162 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  207 (459)
                      +..    .+..+++|++|++++|++++..+  +..+++|+.|++++
T Consensus       187 ~l~----~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 DIS----PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCG----GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CCh----hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            542    36788999999999999886543  78899999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=6.9e-16  Score=137.99  Aligned_cols=314  Identities=21%  Similarity=0.223  Sum_probs=168.4

Q ss_pred             ccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEE
Q 039778           48 NMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFL  127 (459)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  127 (459)
                      .++++|+++++.++ .+++.   .++|++|+++++.+. .++.    ...+|++|+++++.+..+  +. +  .+.|++|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l--~~-l--p~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKAL--SD-L--PPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCC--CS-C--CTTCCEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchh--hh-h--ccccccc
Confidence            35778888887776 34432   467777777777665 3432    245677777777766654  21 1  1357777


Q ss_pred             ecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccccccccchhccCCCCCcEEEcCC
Q 039778          128 DLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPD  207 (459)
Q Consensus       128 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  207 (459)
                      +++++.+..   ++ .++.+++|+.++++++.+.....      ....+..+.+..+....  ...+..++.++.+.+..
T Consensus       104 ~L~~n~l~~---lp-~~~~l~~L~~L~l~~~~~~~~~~------~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~  171 (353)
T d1jl5a_         104 GVSNNQLEK---LP-ELQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADN  171 (353)
T ss_dssp             ECCSSCCSS---CC-CCTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCS
T ss_pred             ccccccccc---cc-chhhhccceeecccccccccccc------ccccccchhhccccccc--cccccccccceeccccc
Confidence            777776654   33 24566777777777666543221      12345555554443321  22344455666666666


Q ss_pred             CcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCcccCcCCCCCccEEEeccCcccccc
Q 039778          208 NQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRLPTRSRKNIIALDISYNKLQGHI  287 (459)
Q Consensus       208 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  287 (459)
                      +.... ..    ......+.+...+..+.                          .......++.++.++++++... ..
T Consensus       172 n~~~~-~~----~~~~~~~~l~~~~~~~~--------------------------~~~~~~~l~~L~~l~l~~n~~~-~~  219 (353)
T d1jl5a_         172 NSLKK-LP----DLPLSLESIVAGNNILE--------------------------ELPELQNLPFLTTIYADNNLLK-TL  219 (353)
T ss_dssp             SCCSS-CC----CCCTTCCEEECCSSCCS--------------------------SCCCCTTCTTCCEEECCSSCCS-SC
T ss_pred             ccccc-cc----ccccccccccccccccc--------------------------cccccccccccccccccccccc-cc
Confidence            54431 11    01111222222221111                          0112234567777777776554 23


Q ss_pred             chhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeecccccccccccccccc
Q 039778          288 PVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNN  367 (459)
Q Consensus       288 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~  367 (459)
                      +.    ...++..+.+..+.+....    ...+.+...++..+.+. .+..    ........++..+.+.+    ....
T Consensus       220 ~~----~~~~l~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~-~l~~----l~~~~~~~~~~~~~~~~----~~~~  282 (353)
T d1jl5a_         220 PD----LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFS-GLSE----LPPNLYYLNASSNEIRS----LCDL  282 (353)
T ss_dssp             CS----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-EESC----CCTTCCEEECCSSCCSE----ECCC
T ss_pred             cc----ccccccccccccccccccc----ccccccccccccccccc-cccc----ccchhcccccccCcccc----cccc
Confidence            32    1455667777666654321    12345566666555443 2211    01234445555544432    1233


Q ss_pred             ccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEe
Q 039778          368 LTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD  447 (459)
Q Consensus       368 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  447 (459)
                      +++|++|++++|++. .+|..   +++|+.|++++|+++ .+|..   +++|+.|++++|++. .+|...   .+|+.|.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~  350 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLR  350 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEE
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeE
Confidence            577888888888776 34432   467888888888877 55543   357888888888876 566432   2455544


Q ss_pred             c
Q 039778          448 L  448 (459)
Q Consensus       448 l  448 (459)
                      +
T Consensus       351 ~  351 (353)
T d1jl5a_         351 M  351 (353)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=1.5e-15  Score=135.81  Aligned_cols=314  Identities=25%  Similarity=0.297  Sum_probs=170.2

Q ss_pred             ccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECc
Q 039778           26 SSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMS  105 (459)
Q Consensus        26 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  105 (459)
                      .+++.|+++++.+...++  ..++|++|++++|+++ .++..   ..+|+.|++.++... .++  .+  .+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~--~l--p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALS--DL--PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC--SC--CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhh--hh--cccccccccc
Confidence            356777777776655332  2456777777777765 33433   346777777766554 221  11  2457777777


Q ss_pred             ccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEccccc
Q 039778          106 DNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRND  185 (459)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  185 (459)
                      +|.+..+  + ..+.+++|++++++++.+...   +.   ..+.+..+.+..+.....    ..+..++.++.+.+.++.
T Consensus       107 ~n~l~~l--p-~~~~l~~L~~L~l~~~~~~~~---~~---~~~~l~~l~~~~~~~~~~----~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         107 NNQLEKL--P-ELQNSSFLKIIDVDNNSLKKL---PD---LPPSLEFIAAGNNQLEEL----PELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             SSCCSSC--C-CCTTCTTCCEEECCSSCCSCC---CC---CCTTCCEEECCSSCCSSC----CCCTTCTTCCEEECCSSC
T ss_pred             ccccccc--c-chhhhccceeecccccccccc---cc---ccccccchhhcccccccc----ccccccccceeccccccc
Confidence            7777665  3 245677777777777665442   11   234455555555443221    124556667777777665


Q ss_pred             cccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecCccccCCccc
Q 039778          186 FIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHANNSLSGPFRL  265 (459)
Q Consensus       186 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  265 (459)
                      ......    .....+.+...+..+. .+  .....++.++.++++++.....                           
T Consensus       174 ~~~~~~----~~~~~~~l~~~~~~~~-~~--~~~~~l~~L~~l~l~~n~~~~~---------------------------  219 (353)
T d1jl5a_         174 LKKLPD----LPLSLESIVAGNNILE-EL--PELQNLPFLTTIYADNNLLKTL---------------------------  219 (353)
T ss_dssp             CSSCCC----CCTTCCEEECCSSCCS-SC--CCCTTCTTCCEEECCSSCCSSC---------------------------
T ss_pred             cccccc----cccccccccccccccc-cc--cccccccccccccccccccccc---------------------------
Confidence            443211    1123344555444333 22  2245567777777766543210                           


Q ss_pred             CcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCC-CCCcEEEccCCccccccchhHHhcc
Q 039778          266 PTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDM-NSLIYLDLSNNQLTGEIPEHLAMGC  344 (459)
Q Consensus       266 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~  344 (459)
                       .....++..+.+..+.+.. .+.    ..+.+....+..+.+..     +..+ ......++..+.+. .++    ..+
T Consensus       220 -~~~~~~l~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~~~-----l~~l~~~~~~~~~~~~~~~-~~~----~~~  283 (353)
T d1jl5a_         220 -PDLPPSLEALNVRDNYLTD-LPE----LPQSLTFLDVSENIFSG-----LSELPPNLYYLNASSNEIR-SLC----DLP  283 (353)
T ss_dssp             -CSCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSE-----ESCCCTTCCEEECCSSCCS-EEC----CCC
T ss_pred             -ccccccccccccccccccc-ccc----ccccccccccccccccc-----cccccchhcccccccCccc-ccc----ccC
Confidence             1112334455555544431 111    13344555554443321     1111 23455566666555 332    236


Q ss_pred             cccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEc
Q 039778          345 FNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIM  424 (459)
Q Consensus       345 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  424 (459)
                      ++|++|++++|++.. ++.   .+++|++|++++|.++. +|.   .+.+|++|++++|++. .+|+..   .+|+.|.+
T Consensus       284 ~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~  351 (353)
T d1jl5a_         284 PSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR-EFPDIP---ESVEDLRM  351 (353)
T ss_dssp             TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred             CCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCCc-ccc---ccCCCCEEECcCCcCC-CCCccc---cccCeeEC
Confidence            788888888888763 332   35788888888888773 443   2457888888888876 666543   35566555


Q ss_pred             C
Q 039778          425 P  425 (459)
Q Consensus       425 ~  425 (459)
                      .
T Consensus       352 ~  352 (353)
T d1jl5a_         352 N  352 (353)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.9e-18  Score=148.77  Aligned_cols=182  Identities=16%  Similarity=0.171  Sum_probs=115.3

Q ss_pred             CCCccEEEeccCccccccchhhhhcCCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCC-ccccccchhHHhcccccc
Q 039778          270 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNN-QLTGEIPEHLAMGCFNLE  348 (459)
Q Consensus       270 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~  348 (459)
                      ..+|++|+++++.+.+.....+...+++|++|++++|.+.+.....+..+++|++|++++| .+++.....++.++++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3567777777777665544555555777788877777766555556667777777887775 455444445555677788


Q ss_pred             eeecccc-ccccccc-ccc-ccccCCceEEccCCc--ccCC-CcccccccCCCcEEEccccc-ccCCCcccccCcccccE
Q 039778          349 YLLLSNN-SLQGQLF-SKK-NNLTKLKRLNLDGNH--FIGD-IPESLSNCSSLQGLYISDND-ITGSIPTWIGNISFLDA  421 (459)
Q Consensus       349 ~L~l~~~-~i~~~~~-~~~-~~~~~L~~L~l~~~~--~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~  421 (459)
                      +|++++| .+++... ..+ ..++.|+.|+++++.  +.+. +.....++++|++|++++|. +++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            8877776 3433211 222 234677777777763  2221 11223456777777777764 55555566667777777


Q ss_pred             EEcCCC-cccCCCchhhcCCCcccEEeccCC
Q 039778          422 IIMPDN-HLEGPIPSEFCQLDYLEILDLSKN  451 (459)
Q Consensus       422 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~  451 (459)
                      |++++| .+++.....++++++|+.|++++|
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            777776 455555556677777777777776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.2e-16  Score=128.16  Aligned_cols=175  Identities=25%  Similarity=0.359  Sum_probs=136.9

Q ss_pred             ccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeee
Q 039778            9 LSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTF   88 (459)
Q Consensus         9 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~   88 (459)
                      ++.+.+++...  ...++++++|+++++.+.+..++..+++|++|++++|++++..  .+.++++|++|+++++... ..
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~   99 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DI   99 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CC
T ss_pred             hCCCCCCCccC--HHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-cc
Confidence            44455554332  2346789999999998888778889999999999999987533  3889999999999988765 23


Q ss_pred             ccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccc
Q 039778           89 DVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQ  168 (459)
Q Consensus        89 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  168 (459)
                        ..+..+++|+.++++++.....   ..+..+++|+.++++++.+..   + ..+..+++++.|++.+|.+....    
T Consensus       100 --~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~---~-~~l~~~~~L~~L~l~~n~l~~l~----  166 (199)
T d2omxa2         100 --TPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD---I-SALSGLTSLQQLNFSSNQVTDLK----  166 (199)
T ss_dssp             --GGGTTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCCC---C-GGGTTCTTCSEEECCSSCCCCCG----
T ss_pred             --cccccccccccccccccccccc---cccchhhhhHHhhhhhhhhcc---c-ccccccccccccccccccccCCc----
Confidence              2577899999999999887765   457788999999999998764   3 35778999999999999876543    


Q ss_pred             cccCcccccEEEccccccccccchhccCCCCCcEE
Q 039778          169 GLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVL  203 (459)
Q Consensus       169 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  203 (459)
                      .+.++++|++|++++|++++. + .+..+++|++|
T Consensus       167 ~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         167 PLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             cccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence            367889999999999988764 2 46778888875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.5e-16  Score=130.37  Aligned_cols=179  Identities=27%  Similarity=0.365  Sum_probs=141.8

Q ss_pred             ccCCcccccchhhhcCCccccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeee
Q 039778            9 LSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTF   88 (459)
Q Consensus         9 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~   88 (459)
                      +....+++....  ..+..|++|+++++.+.+..++..+++|++|++++|.+++..  .++.+++|++|++++|.+. .+
T Consensus        31 l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l  105 (210)
T d1h6ta2          31 LKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DL  105 (210)
T ss_dssp             TTCSCTTSEECH--HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CG
T ss_pred             hCcCccCCccCH--HHhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-cc
Confidence            344444443322  246789999999999888778899999999999999987533  4788999999999999876 33


Q ss_pred             ccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccc
Q 039778           89 DVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQ  168 (459)
Q Consensus        89 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  168 (459)
                      +  .+..+++|+.|+++++.+...   ..+..++.++.++++++.+.+.    ..+..+++|+.+++++|++.+..    
T Consensus       106 ~--~l~~l~~L~~L~l~~~~~~~~---~~l~~l~~l~~l~~~~n~l~~~----~~~~~l~~L~~l~l~~n~l~~i~----  172 (210)
T d1h6ta2         106 S--SLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIV----  172 (210)
T ss_dssp             G--GGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCG----
T ss_pred             c--ccccccccccccccccccccc---cccccccccccccccccccccc----ccccccccccccccccccccccc----
Confidence            3  578899999999999987764   4688899999999999887653    34667899999999999886532    


Q ss_pred             cccCcccccEEEccccccccccchhccCCCCCcEEEcCC
Q 039778          169 GLCELVHLQDLYIDRNDFIGSLPWCLANLTSLRVLHVPD  207 (459)
Q Consensus       169 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  207 (459)
                      .+.++++|++|++++|.+++. + .+..+++|++|++++
T Consensus       173 ~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence            367889999999999988754 3 578899999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.9e-16  Score=127.46  Aligned_cols=181  Identities=24%  Similarity=0.349  Sum_probs=143.4

Q ss_pred             cccEEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcc
Q 039778           27 SLKNLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSD  106 (459)
Q Consensus        27 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  106 (459)
                      ++....++.+.+.+......++++++|+++++.+.+  ...+..+++|++|++++|.+.. .+  .+..+++|++|++++
T Consensus        19 ~~i~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~--l~~l~~l~nL~~L~Ls~N~l~~-~~--~l~~l~~L~~L~l~~   93 (199)
T d2omxa2          19 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD-IT--PLKNLTKLVDILMNN   93 (199)
T ss_dssp             HHHHHHTTCSSTTSEECHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCS
T ss_pred             HHHHHHhCCCCCCCccCHHHhcCCCEEECCCCCCCC--ccccccCCCcCcCccccccccC-cc--cccCCcccccccccc
Confidence            334445666666665556678899999999999874  3468899999999999998763 32  488899999999999


Q ss_pred             cccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccccc
Q 039778          107 NEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDF  186 (459)
Q Consensus       107 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  186 (459)
                      |.+...   ..+..++.|+.++++++.....    ..+..+++|+.+++++|++....    .+..+++|++|++.+|.+
T Consensus        94 n~~~~~---~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~----~l~~~~~L~~L~l~~n~l  162 (199)
T d2omxa2          94 NQIADI---TPLANLTNLTGLTLFNNQITDI----DPLKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLNFSSNQV  162 (199)
T ss_dssp             SCCCCC---GGGTTCTTCSEEECCSSCCCCC----GGGTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCC
T ss_pred             cccccc---cccccccccccccccccccccc----cccchhhhhHHhhhhhhhhcccc----cccccccccccccccccc
Confidence            988776   3588999999999998877653    34678999999999999875432    467889999999999988


Q ss_pred             ccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEE
Q 039778          187 IGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVL  228 (459)
Q Consensus       187 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  228 (459)
                      .+..  .+.++++|++|++++|+++ .+  ..+..+++|+.|
T Consensus       163 ~~l~--~l~~l~~L~~L~ls~N~i~-~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         163 TDLK--PLANLTTLERLDISSNKVS-DI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCC-CC--GGGGGCTTCSEE
T ss_pred             cCCc--cccCCCCCCEEECCCCCCC-CC--ccccCCCCCCcC
Confidence            7653  3788999999999999887 33  357788888865

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.2e-16  Score=129.32  Aligned_cols=181  Identities=25%  Similarity=0.399  Sum_probs=145.6

Q ss_pred             EEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccC
Q 039778           31 LSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEID  110 (459)
Q Consensus        31 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  110 (459)
                      ..+....+.+......+..|++|+++++.+...  ..+..+++|++|++++|.+. .++  .+..+++|++|++++|.+.
T Consensus        29 ~~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~-~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HHTTCSCTTSEECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HHhCcCccCCccCHHHhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCcccc-Ccc--ccccCcccccccccccccc
Confidence            345555555544555688999999999998643  35889999999999999887 333  4678999999999999998


Q ss_pred             CccCcccccCCCCCcEEecCCCccCCCCcccccccCCCcccEEEccCCcccccccccccccCcccccEEEcccccccccc
Q 039778          111 NLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELVHLQDLYIDRNDFIGSL  190 (459)
Q Consensus       111 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  190 (459)
                      ++  + .+..+++|+.+++.++.+...    ..+..+++++.++++++.+....    ....+++|+++++++|.+.+..
T Consensus       104 ~l--~-~l~~l~~L~~L~l~~~~~~~~----~~l~~l~~l~~l~~~~n~l~~~~----~~~~l~~L~~l~l~~n~l~~i~  172 (210)
T d1h6ta2         104 DL--S-SLKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIV  172 (210)
T ss_dssp             CG--G-GGTTCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCG
T ss_pred             cc--c-ccccccccccccccccccccc----ccccccccccccccccccccccc----cccccccccccccccccccccc
Confidence            76  3 588899999999999987642    35778899999999999876432    3567889999999999987643


Q ss_pred             chhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeec
Q 039778          191 PWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSN  232 (459)
Q Consensus       191 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  232 (459)
                      +  +.++++|++|++++|.+. .+  ..+..+++|+.|++++
T Consensus       173 ~--l~~l~~L~~L~Ls~N~i~-~l--~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 P--LAGLTKLQNLYLSKNHIS-DL--RALAGLKNLDVLELFS  209 (210)
T ss_dssp             G--GTTCTTCCEEECCSSCCC-BC--GGGTTCTTCSEEEEEE
T ss_pred             c--ccCCCCCCEEECCCCCCC-CC--hhhcCCCCCCEEEccC
Confidence            3  778999999999999887 44  3588999999999875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.8e-18  Score=145.33  Aligned_cols=227  Identities=15%  Similarity=0.088  Sum_probs=153.3

Q ss_pred             cEEEccCCcccccchhhhcCCccccEEEeccccccCC-cccccCccCceEEcCCCCCCccc-ccccccCCCCcEEEccCC
Q 039778            5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGS-INIEGMNMLESLDLSGNKFNSSI-LSSLTALSSLRKLNLMAT   82 (459)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~   82 (459)
                      +.||+++..+.......+.. ..+..+.++......+ .......+|++|++++|.++... ...+.+|++|++|++.+|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            57899988765443333322 2455666665544332 23445678999999999876554 445778999999999999


Q ss_pred             cceeeeccccccCCCCCcEEECcccc-cCCccCcccccCCCCCcEEecCCCccCCCCccccccc-CCCcccEEEccCCcc
Q 039778           83 GFKGTFDVQELDSLSNLEELDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIG-SFPSLKTLYLKSNNF  160 (459)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  160 (459)
                      .+. ......+..+++|++|++++|. +++.........+++|++|++++|....+..+...+. .+++|+.|+++++..
T Consensus        82 ~l~-~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          82 RLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             BCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             CCC-cHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            765 3334567889999999999864 5443323345678999999999875433222333333 457899999987632


Q ss_pred             c-ccccccccccCcccccEEEccccc-cccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecc
Q 039778          161 A-KTVTTTQGLCELVHLQDLYIDRND-FIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNN  233 (459)
Q Consensus       161 ~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (459)
                      . ...........+++|++|++++|. +++.....+..+++|++|++++|...+......+..+++|+.|++.++
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            1 111122234568899999999874 666666778889999999999974322222445678899999999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=2.8e-17  Score=132.74  Aligned_cols=178  Identities=24%  Similarity=0.246  Sum_probs=141.9

Q ss_pred             CccEEEeccCccccccchhhhhcCCCccEEEeecCcCCC-CCCCcccCCCCCcEEEccCCccccccchhHHhccccccee
Q 039778          272 NIIALDISYNKLQGHIPVEIGKVLPNLGFLSITFNAFNG-SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL  350 (459)
Q Consensus       272 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  350 (459)
                      ..+.++.+++.++ .+|..+   .+++++|+|++|.++. .....|.++++|+.|++++|.+. .++...+..+++|++|
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L   83 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQEL   83 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEE
T ss_pred             cCCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-ccccccccccccccee
Confidence            3457888888887 777654   4689999999999975 45677889999999999999998 6777777789999999


Q ss_pred             eccccccccccccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          351 LLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       351 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      ++++|++....+.+|.++++|++|+|++|.+....+.+|..+++|++|++++|++.... ....-...++.+.+..+.+.
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLNGGAAR  162 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCSGGGCB
T ss_pred             eeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc-chHHHhhhhhhhcccCCCeE
Confidence            99999999888888999999999999999999888888999999999999999887332 21111234666677777777


Q ss_pred             CCCchhhcCCCcccEEeccCCcccccCC
Q 039778          431 GPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       431 ~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      +..|..   ++.++.++|+.+.+.++-|
T Consensus       163 c~~p~~---l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         163 CGAPSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             BCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             eCCChh---hcCCEeeecCHhhCcCCCC
Confidence            666754   4556678899998887644

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.3e-16  Score=130.62  Aligned_cols=218  Identities=16%  Similarity=0.167  Sum_probs=146.7

Q ss_pred             cEEEccCCcccccchhhhcCCccccEEEeccccccC--CcccccCccCceEEcCCCCCCcc-cccccccCCCCcEEEccC
Q 039778            5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEG--SINIEGMNMLESLDLSGNKFNSS-ILSSLTALSSLRKLNLMA   81 (459)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~   81 (459)
                      ++++.++..++. .|+.+.  +++++|++++|.+..  ..+|.++++|++|++++|.+... ....|.++++++++.+..
T Consensus        11 ~~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSS-CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            677888877774 333332  578999999988765  34588899999999999887643 355688899999998865


Q ss_pred             CcceeeeccccccCCCCCcEEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcccccccCC-CcccEEEccCCcc
Q 039778           82 TGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF-PSLKTLYLKSNNF  160 (459)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~  160 (459)
                      +......+...+..+++|++++++++.+........+..+..+..+...++.+...  ....+..+ ..++.+++.++++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i--~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI--ERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEE--CTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccc--cccccccccccceeeecccccc
Confidence            43333566667888999999999998887664333444555666655555555432  22334444 3688888888877


Q ss_pred             cccccccccccCcccccEE-EccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEee
Q 039778          161 AKTVTTTQGLCELVHLQDL-YIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLS  231 (459)
Q Consensus       161 ~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  231 (459)
                      ......   .....+++++ .++++.+....+..|.++++|++|+++++.+. .++...+.++++|+.+++.
T Consensus       166 ~~i~~~---~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         166 QEIHNC---AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CEECTT---TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEE
T ss_pred             cccccc---cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCC
Confidence            654433   2234455555 45666676655566788888888888888876 5655566666666655544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.3e-16  Score=130.63  Aligned_cols=227  Identities=15%  Similarity=0.100  Sum_probs=114.0

Q ss_pred             cEEEccccccccccchhccCCCCCcEEEcCCCcCcCcCCCCcccCCCcccEEEeecceeeeecccccccccCCceeeecC
Q 039778          177 QDLYIDRNDFIGSLPWCLANLTSLRVLHVPDNQLTGNLSSSPLMHLTSIEVLLLSNNHFQIPISLEPFFNYSKLKIFHAN  256 (459)
Q Consensus       177 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~  256 (459)
                      +.++.++..++ .+|..+.  +++++|+++++.+. .++...+.++++|+.|++++|.+.                    
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~--------------------   66 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL--------------------   66 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTC--------------------
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhcccccc--------------------
Confidence            44555554444 3333332  45677777776665 444445666666666666665433                    


Q ss_pred             ccccCCcccCcCCCCCccEEEeccCccccccchhhhhcCCCccEEEeec-CcCCCCCCCcccCCCCCcEEEccCCccccc
Q 039778          257 NSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLSITF-NAFNGSIPSSFGDMNSLIYLDLSNNQLTGE  335 (459)
Q Consensus       257 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  335 (459)
                                                  +.++...+..++.++.+.+.. +.+.......|.++++|+.+++.++.+...
T Consensus        67 ----------------------------~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~  118 (242)
T d1xwdc1          67 ----------------------------EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL  118 (242)
T ss_dssp             ----------------------------CEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSC
T ss_pred             ----------------------------ceeeccccccccccccccccccccccccccccccccccccccccchhhhccc
Confidence                                        222222222344444444432 233333344455555556555555555421


Q ss_pred             cchhHHhcccccceeecccccccccccccccccc-CCceEEccCCcccCCCcccccccCCCcEE-EcccccccCCCcccc
Q 039778          336 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLT-KLKRLNLDGNHFIGDIPESLSNCSSLQGL-YISDNDITGSIPTWI  413 (459)
Q Consensus       336 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~  413 (459)
                      .+.......+.++.+...++.+.......|..++ .++.+++.+|.+....+..+ ...+++++ .+.+|.+++..+..|
T Consensus       119 ~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f  197 (242)
T d1xwdc1         119 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVF  197 (242)
T ss_dssp             CCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTT
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHh
Confidence            1212222233444444444444443334444333 56667777776664433333 33444444 345556663333456


Q ss_pred             cCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCCC
Q 039778          414 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLPS  459 (459)
Q Consensus       414 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~  459 (459)
                      .++++|++|+|++|+++...+..+.+++.|+.+++.+.+   ++|+
T Consensus       198 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l~---~lp~  240 (242)
T d1xwdc1         198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT  240 (242)
T ss_dssp             TTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESSS---CSCC
T ss_pred             cCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCCC---cCCC
Confidence            677777777777777773333446666666666655432   5553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=2e-16  Score=127.66  Aligned_cols=156  Identities=18%  Similarity=0.142  Sum_probs=119.8

Q ss_pred             cEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccC
Q 039778          299 GFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDG  378 (459)
Q Consensus       299 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  378 (459)
                      +.++.++++++. ++..+.  +++++|+|++|.++..++...|.++++|++|++++|.+....+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            467777777763 344332  57899999999987557777777889999999999998888888888889999999999


Q ss_pred             CcccCCCcccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCchhhcCCCcccEEeccCCcccccCC
Q 039778          379 NHFIGDIPESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGSLP  458 (459)
Q Consensus       379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p  458 (459)
                      |++....+.+|.++++|++|++++|.+....+..|..+++|++|+|++|.+.+. +....-...++...+..+.+++..|
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~-~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN-CHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS-GGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc-cchHHHhhhhhhhcccCCCeEeCCC
Confidence            998877777888899999999999999866677888889999999999988743 2211112345666677777776665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.2e-15  Score=115.36  Aligned_cols=131  Identities=17%  Similarity=0.202  Sum_probs=89.1

Q ss_pred             hcCCccccEEEeccccccCCcc-cccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCc
Q 039778           22 LAGLSSLKNLSLAYNRLEGSIN-IEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLE  100 (459)
Q Consensus        22 ~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  100 (459)
                      +..+..+|.|++++|.+..... +..+++|++|++++|.+...  ..+..+++|++|++++|.+. .++...+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccccc
Confidence            4456677888888887766433 35677788888888877632  45777788888888887776 44443455677888


Q ss_pred             EEECcccccCCccCcccccCCCCCcEEecCCCccCCCCcc-cccccCCCcccEEEc
Q 039778          101 ELDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV-LHSIGSFPSLKTLYL  155 (459)
Q Consensus       101 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l  155 (459)
                      +|++++|.+........+..+++|+++++++|.+...... ...+..+|+|+.|+.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            8888888777663334577778888888888877553221 224667788887763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.5e-15  Score=115.22  Aligned_cols=127  Identities=15%  Similarity=0.125  Sum_probs=92.3

Q ss_pred             ccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceEEccCCcccCCCcccccccCCC
Q 039778          316 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSL  395 (459)
Q Consensus       316 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  395 (459)
                      +..+..+++|++++|+++ .++ ..+..+++|++|++++|+|...  +.+..+++|++|++++|.+....+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            445567888888888887 554 3445678888888888887743  457778888888888888876555556678888


Q ss_pred             cEEEcccccccCCC-cccccCcccccEEEcCCCcccCCCc----hhhcCCCcccEEe
Q 039778          396 QGLYISDNDITGSI-PTWIGNISFLDAIIMPDNHLEGPIP----SEFCQLDYLEILD  447 (459)
Q Consensus       396 ~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~  447 (459)
                      ++|++++|.+.... ...+..+++|+.|++++|++. ..|    ..+..+|+|+.||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            88888888877322 135677888888888888886 333    2467788888877

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=3e-15  Score=132.90  Aligned_cols=88  Identities=18%  Similarity=0.162  Sum_probs=40.0

Q ss_pred             CCCccEEEeecCcCCCCC----CCcccCCCCCcEEEccCCccccccc----hhHHhcccccceeeccccccccc----cc
Q 039778          295 LPNLGFLSITFNAFNGSI----PSSFGDMNSLIYLDLSNNQLTGEIP----EHLAMGCFNLEYLLLSNNSLQGQ----LF  362 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~----~~  362 (459)
                      .+.++.+.++++.+.+..    ...+..++.|+.|++++|.+.+...    ......+++|+.|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            455566666555554321    1122334555555555555542211    11122345555555555554432    12


Q ss_pred             cccccccCCceEEccCCccc
Q 039778          363 SKKNNLTKLKRLNLDGNHFI  382 (459)
Q Consensus       363 ~~~~~~~~L~~L~l~~~~~~  382 (459)
                      ..+..+++|++|++++|.+.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCC
T ss_pred             ccccccccchhhhhhcCccC
Confidence            23344455555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=8.1e-14  Score=102.53  Aligned_cols=102  Identities=25%  Similarity=0.352  Sum_probs=48.7

Q ss_pred             EEEeccccccCCcccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECccccc
Q 039778           30 NLSLAYNRLEGSINIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEI  109 (459)
Q Consensus        30 ~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  109 (459)
                      .|++++|.+.....+..+++|++|++++|+++ ..+..+..+++|++|++++|.+. .++  .+..+++|+++++++|.+
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC--ccccccccCeEECCCCcc
Confidence            44455554444444445555555555555544 23334445555555555554443 121  344455555555555555


Q ss_pred             CCccCcccccCCCCCcEEecCCCccC
Q 039778          110 DNLVVPKDYRGLRKLRFLDLSGLRIR  135 (459)
Q Consensus       110 ~~~~~~~~~~~~~~L~~L~l~~~~~~  135 (459)
                      ........+..+++|+.+++++|.+.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            44432234445555555555555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.3e-13  Score=101.44  Aligned_cols=119  Identities=22%  Similarity=0.261  Sum_probs=96.2

Q ss_pred             cEEEccCCcccccchhhhcCCccccEEEeccccccCC-cccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCc
Q 039778            5 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGS-INIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATG   83 (459)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   83 (459)
                      |+|++++|.++...  .+..+++|++|++++|.+... ..+..+++|++|++++|.++..  ..+..+++|++|++++|.
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc--CccccccccCeEECCCCc
Confidence            68999999998543  488899999999999998874 5689999999999999999743  468999999999999999


Q ss_pred             ceeeeccccccCCCCCcEEECcccccCCccC--cccccCCCCCcEE
Q 039778           84 FKGTFDVQELDSLSNLEELDMSDNEIDNLVV--PKDYRGLRKLRFL  127 (459)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L  127 (459)
                      +........+..+++|+++++++|.+.....  ......+|+|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8744344578889999999999998865421  2234456777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=1.9e-14  Score=127.63  Aligned_cols=235  Identities=17%  Similarity=0.196  Sum_probs=162.9

Q ss_pred             CCCcEEEccCCcccccchhh----hcCCccccEEEeccccccCC------------cccccCccCceEEcCCCCCCcccc
Q 039778            2 SNLKFLDLSHNSFNNSVLSS----LAGLSSLKNLSLAYNRLEGS------------INIEGMNMLESLDLSGNKFNSSIL   65 (459)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~------------~~~~~l~~L~~L~l~~~~~~~~~~   65 (459)
                      ..|++|+|++|.+.+.....    +...++|+.++++++.....            ..+..+++|++|++++|.++....
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            57899999999887755555    44578999999987753321            124568899999999998876533


Q ss_pred             ----cccccCCCCcEEEccCCcceeeecc------------ccccCCCCCcEEECcccccCCccC---cccccCCCCCcE
Q 039778           66 ----SSLTALSSLRKLNLMATGFKGTFDV------------QELDSLSNLEELDMSDNEIDNLVV---PKDYRGLRKLRF  126 (459)
Q Consensus        66 ----~~~~~l~~L~~L~l~~~~~~~~~~~------------~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~  126 (459)
                          ..+..+++|++|++++|.+......            ......+.|+.+.++++.+.....   ...+..++.|+.
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence                3345789999999999876421100            012356789999999987765421   234567889999


Q ss_pred             EecCCCccCCCC---cccccccCCCcccEEEccCCcccccc--cccccccCcccccEEEccccccccccchh----ccC-
Q 039778          127 LDLSGLRIRDGS---KVLHSIGSFPSLKTLYLKSNNFAKTV--TTTQGLCELVHLQDLYIDRNDFIGSLPWC----LAN-  196 (459)
Q Consensus       127 L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~-  196 (459)
                      +++++|.+....   .+...+..+++|+.|++++|.+....  .....+..+++|++|++++|.+.+.....    +.. 
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            999998876421   13445678899999999999874321  12234677889999999999887643333    332 


Q ss_pred             -CCCCcEEEcCCCcCcCcCC---CCcc-cCCCcccEEEeecceee
Q 039778          197 -LTSLRVLHVPDNQLTGNLS---SSPL-MHLTSIEVLLLSNNHFQ  236 (459)
Q Consensus       197 -~~~L~~L~l~~~~~~~~~~---~~~~-~~~~~L~~L~l~~~~~~  236 (459)
                       .+.|++|++++|.+.....   ...+ .+.+.|+.|++++|.+.
T Consensus       271 ~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence             4679999999998763211   1222 25788999999998875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=2.7e-13  Score=108.89  Aligned_cols=106  Identities=24%  Similarity=0.288  Sum_probs=65.1

Q ss_pred             CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCccccccchhHHhcccccceeeccccccccccccccccccCCceE
Q 039778          295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKRL  374 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  374 (459)
                      +++|+.|++++|.+...  ..+.++++|+.|++++|.++ .++.. ...+++|++|++++|+++.  ...+..+++|++|
T Consensus        47 L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~-~~~~~~L~~L~l~~N~i~~--l~~~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENL-DAVADTLEELWISYNQIAS--LSGIEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSH-HHHHHHCCEEECSEEECCC--HHHHHHHHHSSEE
T ss_pred             ccccceeECcccCCCCc--ccccCCccccChhhcccccc-ccccc-ccccccccccccccccccc--ccccccccccccc
Confidence            67777777777776643  24666677777777777665 44432 2235567777777776654  2345566677777


Q ss_pred             EccCCcccCCCc-ccccccCCCcEEEccccccc
Q 039778          375 NLDGNHFIGDIP-ESLSNCSSLQGLYISDNDIT  406 (459)
Q Consensus       375 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  406 (459)
                      ++++|.+.+... ..+..+++|+.|++++|++.
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccchhccccccccccCCCccceeecCCCccc
Confidence            777776653321 34566666777777776655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=6.5e-14  Score=112.62  Aligned_cols=130  Identities=25%  Similarity=0.303  Sum_probs=74.8

Q ss_pred             ccccCccCceEEcCCCCCCcccccccccCCCCcEEEccCCcceeeeccccccCCCCCcEEECcccccCCccCcccccCCC
Q 039778           43 NIEGMNMLESLDLSGNKFNSSILSSLTALSSLRKLNLMATGFKGTFDVQELDSLSNLEELDMSDNEIDNLVVPKDYRGLR  122 (459)
Q Consensus        43 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  122 (459)
                      .+..+++|++|++++|+++..  ..+..+++|++|++++|.+. .++. ....+++|++|++++|.+..+   ..+..++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~-~~~~~~~L~~L~l~~N~i~~l---~~~~~l~  115 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIASL---SGIEKLV  115 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSS-HHHHHHHCCEEECSEEECCCH---HHHHHHH
T ss_pred             HHhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-cccc-ccccccccccccccccccccc---ccccccc
Confidence            455666667777766666532  24666667777777666554 2221 222345677777777766654   2456667


Q ss_pred             CCcEEecCCCccCCCCcccccccCCCcccEEEccCCccccccccc--------ccccCcccccEEE
Q 039778          123 KLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT--------QGLCELVHLQDLY  180 (459)
Q Consensus       123 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------~~~~~~~~L~~L~  180 (459)
                      +|+.|++++|.+.+... ...+..+++|+.|++++|++.......        ..+..+++|+.|+
T Consensus       116 ~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccc-cccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            77777777776654211 134566777777777777654322211        1145567777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.1e-11  Score=92.50  Aligned_cols=110  Identities=20%  Similarity=0.170  Sum_probs=86.9

Q ss_pred             CCCCCcEEEccCCccccccchhHHhcccccceeecccc-ccccccccccccccCCceEEccCCcccCCCcccccccCCCc
Q 039778          318 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN-SLQGQLFSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQ  396 (459)
Q Consensus       318 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  396 (459)
                      .+.....++..++.+. ..+..+. ..++|++|++.++ .++.....+|..+++|+.|++++|.+....+.+|..+++|+
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~-~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CcCCCCeEEecCCCCc-cCccccc-CccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            3445667888888777 5666543 4789999999766 47776777888899999999999999887788889999999


Q ss_pred             EEEcccccccCCCcccccCcccccEEEcCCCccc
Q 039778          397 GLYISDNDITGSIPTWIGNISFLDAIIMPDNHLE  430 (459)
Q Consensus       397 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  430 (459)
                      +|++++|++. .+|.......+|+.|+|++|++.
T Consensus        84 ~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999999998 55554444557999999999885

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.8e-11  Score=93.91  Aligned_cols=144  Identities=18%  Similarity=0.088  Sum_probs=102.7

Q ss_pred             CCCccEEEeecCcCCCCCCCcccCCCCCcEEEccCCc-cccccchhHHhcccccceeeccccccccccccccccccCCce
Q 039778          295 LPNLGFLSITFNAFNGSIPSSFGDMNSLIYLDLSNNQ-LTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKNNLTKLKR  373 (459)
Q Consensus       295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  373 (459)
                      +...+.++.++.... ..+..+.++++|++|++.+++ +. .++...|.++++|+.|++++|++....+.+|..+++|++
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            344567788777776 345668888999999998775 76 888888888999999999999999888889999999999


Q ss_pred             EEccCCcccCCCcccccccCCCcEEEcccccccC-CCcccccCcccccEEEcCCCcccCCCchhhcCCC
Q 039778          374 LNLDGNHFIGDIPESLSNCSSLQGLYISDNDITG-SIPTWIGNISFLDAIIMPDNHLEGPIPSEFCQLD  441 (459)
Q Consensus       374 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  441 (459)
                      |+|++|++....+..+. ..+|+.|++++|++.- ....++..........+...++....|..+..++
T Consensus        85 L~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQ-GLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             EECCSSCCSCCCSTTTC-SCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred             eeccCCCCcccChhhhc-cccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence            99999999865555554 4579999999998851 1111222211222233344455555555444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.9e-08  Score=77.21  Aligned_cols=86  Identities=22%  Similarity=0.153  Sum_probs=57.1

Q ss_pred             hhHHhcccccceeecccccccccc--ccccccccCCceEEccCCcccCCCcccccccCCCcEEEcccccccCCCcc----
Q 039778          338 EHLAMGCFNLEYLLLSNNSLQGQL--FSKKNNLTKLKRLNLDGNHFIGDIPESLSNCSSLQGLYISDNDITGSIPT----  411 (459)
Q Consensus       338 ~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----  411 (459)
                      ..++..+++|++|++++|+|+...  ...+..+++|+.|++++|.+.+..+..+....+|++|++++|++......    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            344556888888888888887542  34556778888888888887755443344455778888888887644332    


Q ss_pred             ---cccCcccccEEE
Q 039778          412 ---WIGNISFLDAII  423 (459)
Q Consensus       412 ---~~~~~~~L~~L~  423 (459)
                         .+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               244567777653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=6.2e-08  Score=74.27  Aligned_cols=85  Identities=19%  Similarity=0.131  Sum_probs=64.6

Q ss_pred             cccccccCCceEEccCCcccCCC--cccccccCCCcEEEcccccccCCCcccccCcccccEEEcCCCcccCCCc------
Q 039778          363 SKKNNLTKLKRLNLDGNHFIGDI--PESLSNCSSLQGLYISDNDITGSIPTWIGNISFLDAIIMPDNHLEGPIP------  434 (459)
Q Consensus       363 ~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------  434 (459)
                      ..+..++.|++|++++|.++...  +..+..+++|+.|++++|.+.+..+-.+.....|+.|++++|++.....      
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            34457899999999999998653  3456788999999999999984333234455679999999999975433      


Q ss_pred             -hhhcCCCcccEEe
Q 039778          435 -SEFCQLDYLEILD  447 (459)
Q Consensus       435 -~~~~~~~~L~~L~  447 (459)
                       ..+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence             2256789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.28  E-value=2.3e-07  Score=71.37  Aligned_cols=87  Identities=11%  Similarity=0.033  Sum_probs=38.7

Q ss_pred             cccccCCceEEccCCcccCCC----cccccccCCCcEEEcccccccCCC----cccccCcccccEEEcCCCcccC-----
Q 039778          365 KNNLTKLKRLNLDGNHFIGDI----PESLSNCSSLQGLYISDNDITGSI----PTWIGNISFLDAIIMPDNHLEG-----  431 (459)
Q Consensus       365 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~-----  431 (459)
                      +...+.|++|++++|.+....    ...+...+.|++|++++|++.+..    ..++...++|++|++++|....     
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            334445555555555543221    122334455555555555544321    1233344555555555543321     


Q ss_pred             --CCchhhcCCCcccEEeccCC
Q 039778          432 --PIPSEFCQLDYLEILDLSKN  451 (459)
Q Consensus       432 --~~~~~~~~~~~L~~L~l~~~  451 (459)
                        .+...+...++|+.|+++.+
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCC
Confidence              12233334455555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=1.4e-06  Score=66.89  Aligned_cols=39  Identities=10%  Similarity=0.099  Sum_probs=17.1

Q ss_pred             CCCccEEEeecC-cCCCC----CCCcccCCCCCcEEEccCCccc
Q 039778          295 LPNLGFLSITFN-AFNGS----IPSSFGDMNSLIYLDLSNNQLT  333 (459)
Q Consensus       295 ~~~L~~L~L~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~  333 (459)
                      .+.|++|+|+++ .+...    +...+...++|+.|++++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            455555555542 23221    1222334445555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.83  E-value=2e-06  Score=65.98  Aligned_cols=14  Identities=7%  Similarity=-0.192  Sum_probs=6.7

Q ss_pred             cCCCcccEEeccCC
Q 039778          438 CQLDYLEILDLSKN  451 (459)
Q Consensus       438 ~~~~~L~~L~l~~~  451 (459)
                      ...+.|+.|+++.+
T Consensus       129 ~~n~~L~~L~l~~~  142 (166)
T d1io0a_         129 EKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHCSSCCEEECCCS
T ss_pred             HhCCCcCEEeCcCC
Confidence            34445555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.73  E-value=9.9e-06  Score=62.00  Aligned_cols=85  Identities=18%  Similarity=0.130  Sum_probs=36.8

Q ss_pred             ccccceeeccccccccc----cccccccccCCceEEccCCcccCCC----cccccccCCCcEEEcc--cccccCC----C
Q 039778          344 CFNLEYLLLSNNSLQGQ----LFSKKNNLTKLKRLNLDGNHFIGDI----PESLSNCSSLQGLYIS--DNDITGS----I  409 (459)
Q Consensus       344 ~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~--~~~~~~~----~  409 (459)
                      .++|++|++++|.++..    +...+...++++.+++.+|.+....    ...+...++|+.++|+  +|++.+.    +
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~L  124 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  124 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHH
Confidence            34455555555544332    1122333455555555555543221    1233444555554443  2333321    2


Q ss_pred             cccccCcccccEEEcCCCc
Q 039778          410 PTWIGNISFLDAIIMPDNH  428 (459)
Q Consensus       410 ~~~~~~~~~L~~L~l~~~~  428 (459)
                      ...+...++|+.|+++.+.
T Consensus       125 a~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         125 ANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCCCcCEEeCcCCC
Confidence            2333345556666555443