Citrus Sinensis ID: 039780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-
Protein Sequence
MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQADQQRDRDGIRDSEAETAGLTENKCWNTLSV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccccccccccccccccHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHEEcEEEEEcccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHccccccccEEEEEEccHHHHHHHHHHHccccccccEEEEccccccEEEcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEcccccccccccccHccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHHHHHHHHHHccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHcccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHcccHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MELSAFLTSVGINSAIAVLLFLLYSVLRkqpgnlnvyfgprlalaserknyppsllrylpspswvVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLpvnyygkemihhdissetLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLayitgsppnpshfTVLVRavpwsaeqsYSESVKEFFMKyyapsylshhmVHRSSRVQRLMNDAEKICRVFKgvsaeqkskpcllpcfcgapnsfeilsnepdnvrgnigldisnlateKENAVAFVCFKTRYAAVVAAEILhsenpmlwvtemapepndvlwsnlsipYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFlyaapptmmvFSTIegsvshsgrkksACIKVLYFTIWNVFFVNVLSGsvigqltklssvkdvPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRiknnppngtlsfpyqtevpRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSyesggqywpiAHKTIIASLVLTQIIALGIFgikkspvasgftIPLIVGTLLFneycrqrffPSFQKIAAQVLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCnirqadqqrdrdgirdseaetagltenkcwntlsv
Flexible Loop (DISEMBL)
MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGvsaeqkskpcLLPCFCGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQadqqrdrdgirdseaetagltenkcwntlsv
Low Complexity Region (SEG)
MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNyppsllrylpspsWVVKAWETTEDDILALGGMDALvfvriivfsirifciAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQADQQRDRDGIRDSEAETAGLTENKCWNTLSV
Disordered region (IsUnstruct)
****AFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQ**********MEEIYQQLKFAYCQFRLISLDLCNIR********************************
Disordered Region (DISOPRED)
*ELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRL*****************PSPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIA**************************************************************************
Disordered Region (DISEMBL)
MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTI**********KSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQA***********SEAETAGLTENKCWNTLSV
Disordered Region (DISPRO)
*ELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALA****NYPPSLLRYLPSPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLI****************************************
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQADQQRDRDGIRDSEAETAGLTENKCWNTLSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	701	2.2.26 [Sep-21-2011]
Q06538	782	Uncharacterized membrane	yes	no	0.884	0.792	0.220	1e-18
O43022	865	Uncharacterized protein C	yes	no	0.825	0.669	0.223	1e-16
Q09809	793	Uncharacterized membrane	no	no	0.439	0.388	0.244	1e-16
Q03516	953	Uncharacterized protein R	no	no	0.430	0.316	0.257	2e-15
Q09766	871	Uncharacterized membrane	no	no	0.851	0.685	0.218	1e-12
Q12252	991	Phosphate metabolism prot	no	no	0.467	0.330	0.215	3e-12
Q9P1W3	806	Transmembrane protein 63C	yes	no	0.708	0.616	0.215	6e-10
O94886	807	Transmembrane protein 63A	no	no	0.780	0.677	0.204	1e-09
Q5R826	807	Transmembrane protein 63A	yes	no	0.780	0.677	0.201	3e-09
Q91YT8	804	Transmembrane protein 63A	yes	no	0.670	0.584	0.209	9e-09

>sp|Q06538|YL241_YEAST Uncharacterized membrane protein YLR241W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR241W PE=1 SV=1

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 168/763 (22%), Positives = 297/763 (38%), Gaps = 143/763 (18%)

Query: 8   TSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSPS---- 63
           T + I +++ +   L +S+L K+         PRL  +   K+     LR LPS +    
Sbjct: 35  TQLTIATSLGIFALLSFSILLKK--------WPRLYASRRYKD--DGNLR-LPSWNQSSL 83

Query: 64  --WVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYY--GK-E 118
             W+   ++  ++ IL   G+DA VF+      I++  I     + ++ PV Y+  GK +
Sbjct: 84  FGWLTVLYKIRDEQILEYAGLDAYVFLSFFKMCIKLLSIFCFFSVCVISPVRYHFTGKID 143

Query: 119 MIHHDISSETLEIFTIANVKESSE-------------WLWTHCFALYVITCSACGLLYFE 165
             + D  SE+  I  +  + E S              +LW +    Y  T  A  +   E
Sbjct: 144 DGNDDDDSESSLIHLVKRIVEGSGDGDNHSAPERTNVYLWMYVLFTYFFTFIAIKMAVAE 203

Query: 166 HKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH 225
            K +  TR AY+ G     +  T+ +  +P   E   SE++K    +    +  S  +  
Sbjct: 204 TKHVVSTRQAYL-GKQNTITDRTIRLSGIP--IELRDSEALKTRIEQLKIGTVSSITICR 260

Query: 226 RSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNS--FEILSNEP-------D 276
               + +L +  +KI +     + E K   C        P S  + +L NE        +
Sbjct: 261 EWGPLNKLFHCRKKILK-----NLELKYSECPRELRTRQPYSENYHLLGNEQSGAVTHGE 315

Query: 277 NV----------------------------RGNIG---------------LDISNLATEK 293
           NV                            RG  G               +D   +   K
Sbjct: 316 NVPSSNNNDEDTILYSQISLGERPKMKIGYRGIFGKEVDAIEYLEQQLKFIDAEIIEARK 375

Query: 294 ENAVA----FVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQLLTQ 349
           ++  A    FV   +   A +AA+ +       ++T +AP P+D+ W ++ +  +  LT+
Sbjct: 376 QHYSATPTAFVTMDSVANAQMAAQAVLDPRVHYFITRLAPAPHDIKWDHVCLSRKDRLTK 435

Query: 350 ---------------------------LEQLSHAFPFLKGMFKK-KFISHVVTGYLPSVI 381
                                      L+ LS  +P +  + K  ++ +++VTG LP+ +
Sbjct: 436 VYSTTVFIGLSSLFLVIPVSYLATLLNLKTLSKFWPSVGQLLKDHQWAANIVTGLLPTYL 495

Query: 382 LILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKL 441
             L  +  P      ++ +G VS+S  + S   K  ++   N+F V  L+G+       L
Sbjct: 496 FTLLNFGIPYFYEYLTSYQGLVSYSEEEISLVSKNFFYIFVNLFLVFTLAGTASNYWAYL 555

Query: 442 SSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPF-FLLRNILKKF-ICRIKNN 499
           S    +   LA ++     F++  ++  G        M PF  LL   L  F + +IK  
Sbjct: 556 SDTTKIAYQLATSVKEFSLFYVDLIILQGIG------MFPFKLLLVGSLIGFPLVKIKAK 609

Query: 500 PPNGTLS------FPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQII 553
            P           F +  ++P+ +L   +  I SVM+  IL   L YF++ + VYK Q+I
Sbjct: 610 TPRQRNELYNPPIFNFGLQLPQPILILIITLIYSVMSTKILTSGLAYFIIGFYVYKYQLI 669

Query: 554 NVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIF-GIKKSPVASGFTIPLIVGTLLFN 612
                   S G+ WP+  + II  L+L Q+   G   G +   V S    PL V TL F 
Sbjct: 670 FATDHLPHSTGKVWPLIFRRIIVGLLLFQLTMTGTLAGFEGGWVLSSCLFPLPVVTLCFL 729

Query: 613 EYCRQRFFPSFQKIAAQVLTQMDQQDEQGGRMEEIYQQLKFAY 655
               + + P  + IA   L+ + + +     +    ++  +AY
Sbjct: 730 YDFEKNYLPLSKYIA---LSSIREYERDNSTVNSANEEESYAY 769

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O43022|YGV8_SCHPO Uncharacterized protein C354.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC354.08c PE=4 SV=1

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 153/684 (22%), Positives = 262/684 (38%), Gaps = 105/684 (15%)

Query: 5   AFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSPSW 64
           + L S+G +S ++V+L  ++++LR +    N Y           +  PP + + L    W
Sbjct: 31  SILVSLGFSSLLSVILLCIFTLLRTK---FNTY----------DRCIPP-MKKSLWG--W 74

Query: 65  VVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYG--KEMIHH 122
           +   W    +D L   G DA++ +    F   +F I A IC  +++P+N     K + + 
Sbjct: 75  IEPLWSIKVEDCLYNMGADAVISLLFSRFCRDVFLILAAICCTILIPINIVATNKTLANS 134

Query: 123 DISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGSPP 182
           D S       +I NV  +  W W H    YV       LL   ++ + R R  Y   SP 
Sbjct: 135 D-SQNAYAKLSIQNV--TGNWTWAHVVICYVFNVLVLFLLARYYQIVMRIRQRYYR-SPT 190

Query: 183 ---NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYY-APSYLSHHMVHRSSRVQRLMNDAE 238
              + S  ++L+  +P +   +   S+    +K   AP ++  H+ H    + +++   +
Sbjct: 191 YQQSMSSRSLLIMDIPTTMRSNNGLSILASRLKSSEAPMHV--HICHAIKNLPKILKKHD 248

Query: 239 KICRVFKGVSAEQKSKPCLLP------------CFCGAPNSFEILSNEPDNVRGNIGLDI 286
              R  + V A+    P  LP                  ++ +  S + +N    +    
Sbjct: 249 NAVRSLEAVLAKFFKNPKKLPDDRPVRRVKQGLLTSEKVDAIDYYSAKIENYGLRVDAAR 308

Query: 287 SNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL 346
            +L   +     F+ +K+ Y A   A   H+         MAPEP+D LW NLS+ +   
Sbjct: 309 ESLYENEFEHYGFITYKSSYIAHDTAR--HNSRVAGASVSMAPEPSDFLWDNLSLAWSTR 366

Query: 347 L----------------------------TQLEQLSHAFPFLKGMFKKKFISHVVTGYLP 378
           L                            + L  L   +P+L+     +      +G+  
Sbjct: 367 LFNRMIGNILFIILIIAWIIETALVAIFISNLYHLGSVWPWLQQQLTSR------SGFWS 420

Query: 379 SVILILFLYAAPPTMMVFSTI-------EGSVSHSGRKKSACIKV-LYFTIWNVFFVNVL 430
            V  IL    A  T M+   I       +GS + S R++    K+ + FT+ N     ++
Sbjct: 421 IVQGILSPAVAGFTFMILEIIMRRISYWQGSFTKSSRERGVLNKLHIIFTLDNFIIYTLM 480

Query: 431 S-----GSVIGQLTK-----------LSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASL 474
           +     G +I   TK            ++   V   ++  +  Q   F    +     S 
Sbjct: 481 AVFWRLGVIIAYKTKEEGNFAEGMSAFATFDTVGLSVSSFV--QFSTFWIMFIAHSTCSF 538

Query: 475 SVEIMQPFFL-LRNILKKFICRIKNNPPNGTLSFPY-QTEVPRLLLFGFLGFIC-SVMAP 531
            VEI QP  L +R I  KF      +    T    Y  ++V   L++ F   IC + + P
Sbjct: 539 FVEIAQPITLTIRLIKTKFFSPTPRDLLEWTAPTKYVYSQVLNKLIYFFTIAICYACINP 598

Query: 532 LILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGI 591
           L+L F  + F + YL  K  ++ V   S ESGG YW      I+  L L  II      +
Sbjct: 599 LVLLFASVLFCVNYLTQKYILMYVSNSSTESGGGYWRPVVNRILLGLELANIILFLCLWV 658

Query: 592 KKSPVASGFTIPLIVGTLLFNEYC 615
           +   V +   IP     + F  +C
Sbjct: 659 QGGRVRAYCIIPNFSFAIAFKIWC 682

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q09809|YAB9_SCHPO Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=3 SV=2

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 158/348 (45%), Gaps = 40/348 (11%)

Query: 298 AFVCFKTRYAA-VVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIP---------YRQLL 347
           AF+ F++   A +VA   + S++ M    E+AP  ND+ W N  I          +  L+
Sbjct: 387 AFITFESMATAQIVAQTHIDSKSLMGLHIELAPAANDIQWHNTYIGRWHKFFQGWFITLV 446

Query: 348 T------------------QLEQLSHAFPFLKGMFKK-KFISHVVTGYLPSVILILFLYA 388
           T                   L+ +   +P L  M +   F++ ++  +LP+++  LF+  
Sbjct: 447 TFMIILLWTVPVGAIAVFINLDTIRRLWPELGRMIEDLPFLNSLLRTFLPTLVYSLFISI 506

Query: 389 APPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSV-IGQLTKLSSVKDV 447
           +P      S+++G  S +  +  A  K   +   N F V V++GS  I +L K       
Sbjct: 507 SPFLFRWLSSMQGLSSRAEEEIYAVGKNYAYLFVNFFLVYVIAGSTSIWELAK--DTTSF 564

Query: 448 PKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQ-----PFFLLRNILKKFICRIKNNPPN 502
              LA  +P+Q  FF+  ++  G     ++++Q      +F+ R+ +   I   K   P+
Sbjct: 565 AHFLANRLPHQAQFFIDLIVLQGIGMFPLKLIQLGKLSSYFVRRSFVPYSIASKKFETPD 624

Query: 503 GTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYES 562
              SF     +P+ +    +    S+++PLIL F LIYF++ +LVYK ++I   +    S
Sbjct: 625 ---SFSVGIFLPQPMFIMLICLCYSIISPLILVFGLIYFIIGFLVYKYELIYQMEHPQHS 681

Query: 563 GGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLL 610
            G+ W      +I   V+ Q+  +G+  ++K+   S    PL+  T++
Sbjct: 682 TGELWSTIFLRMIFGCVIMQLTMMGLMSLRKAYWLSTVIFPLLCFTVI 729

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q03516|RSN1_YEAST Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 154/354 (43%), Gaps = 52/354 (14%)

Query: 286 ISNLATEKENAV----AFVCFKTRYAAVVAAEILHSENPMLWVTEMAP-----EPNDVLW 336
           +  L  + EN+      FV F+++Y A VAA+I     P+     M P     EP+DV+W
Sbjct: 319 VKALQEDHENSSPFNSVFVEFESQYQAQVAAQITTYHAPLF----MTPVYIGIEPSDVVW 374

Query: 337 SNLS---------------------------IPYRQLLTQLEQLSHAFPFLKGMFK-KKF 368
            NL                            + +  +++ +  L++   +LK ++K  K 
Sbjct: 375 FNLRMFWWERLGREVSAVSAIVALVILWAFPVAFVGMISNITSLTNEVKWLKFIYKLPKQ 434

Query: 369 ISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVN 428
           +  ++T   P+V L + +   P  +   +  +G+ S    +         F +  VF V 
Sbjct: 435 LLGLLTSLAPTVALAVLMSFLPKFIRGMAITQGAPSKQNVEYFTQQAYFAFQVIQVFLVT 494

Query: 429 VLSGSVIGQLTKLSSVKDVPKH---LAEAIPNQVGFFMTYVLTSGWASLSVEIMQ--PFF 483
            LS +    +T++  VK+  K    LA  +P    FFM+YV+  G +  S  ++Q  P  
Sbjct: 495 TLSSAATSTVTEI--VKEPTKAMDLLASNLPKASNFFMSYVILQGLSISSGALLQIVPLI 552

Query: 484 LLRNILKKFI---CRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIY 540
           L   +L  F+    R K N   G  S  + T  P       + F  S+++PLIL F  + 
Sbjct: 553 LFY-VLGAFLDGTVRKKWNRFCGLSSMQWGTAFPVYTNLAVITFSYSIISPLILLFAAVA 611

Query: 541 FVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKS 594
           F L Y+ Y   +  VY++S ++ G Y+P A    I  + + QI  LG+F + K 
Sbjct: 612 FFLLYIAYLYNLTYVYQESPDARGIYYPRALFQTIVGIYIGQICLLGLFAVGKG 665

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q09766|YA7D_SCHPO Uncharacterized membrane protein C24H6.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.13 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 155/709 (21%), Positives = 280/709 (39%), Gaps = 112/709 (15%)

Query: 13  NSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSPS-------WV 65
           N AI      L+  LR  P   +VY  PR  + ++ K   P      PSPS       +V
Sbjct: 19  NFAIFCAFIGLFLCLR--PREKHVY-QPRCIIDTQPKEEKPE-----PSPSSPFGLFAYV 70

Query: 66  VKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMF-LVLPVNYYGKEMIHHDI 124
           VK  ET    ++   G+D   F+R + F+    CI   + +F ++LPVN        + +
Sbjct: 71  VKRSETY---LIQYAGVDGYFFIRYL-FTFGALCILGCLVLFPILLPVN------ATNGV 120

Query: 125 SSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGSPPN- 183
             +  +I + +NVK  + + + H F  ++       ++Y E +     R A  +    N 
Sbjct: 121 GEKGFDILSFSNVKNHNRF-YAHVFLSWLFFGFTIFIIYRELRYYVIFRHAMQSSGLYNN 179

Query: 184 -PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQR--LMNDAEKI 240
            PS  T+L+  +P S      E++ E F      + +           +R  L N  E  
Sbjct: 180 LPSSSTMLLTELPNSVLND-EETLHELFPNASEFTCVRDLKKLEKKVKKRSDLGNKYEST 238

Query: 241 CRVFKGVSAEQKSKPCLLPCFCGAPNSFEILS------------------NEPDNVRGNI 282
                  S ++ +K  L+      P++ +  +                  +  D  R  I
Sbjct: 239 LNSLINKSVKKHNK--LVKKHKPLPSTLDYTAYVKKRPTHRLKFLIGKKVDTIDYCRDTI 296

Query: 283 G-LD------ISNLATEKENAVAFVCFK------TRYAAVVAAEILHSENPMLWVTEMAP 329
             LD       ++L   K+    F+ F+      T Y A + ++          +  +AP
Sbjct: 297 AELDEVVDKLQTSLEERKKVGSVFIRFRSQTDLQTAYQAFLYSKKFRKYRFGRALVGIAP 356

Query: 330 EPNDVLWSNLSIPY---------RQLLTQLEQLSHAFP------------FLKGMFKKKF 368
           E  D++WSNL +              +  L  +  AFP             ++ +   KF
Sbjct: 357 E--DIVWSNLDLSMYTRRGKKTISNTILTLMIIFWAFPVAVVGCISNVNYLIEKVHFLKF 414

Query: 369 ISH-------VVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLY-FT 420
           I H       ++TG LPSV L + +   PP +       G+++     ++ C    Y F 
Sbjct: 415 IDHMPPKLLGIITGILPSVALSILMSLVPPFIKFLGKFGGALTVQ-EIENYCQNWYYAFQ 473

Query: 421 IWNVFFVNVLSGSVIGQLTKLSSVKDVPKH---LAEAIPNQVGFFMTYVLTSGWASLSVE 477
           +  VF V  ++ +    + ++  +K+       LA  +P    F+++Y L  G +     
Sbjct: 474 VVQVFLVTTMTSAATSAVVQV--IKEPASSMTLLASNLPKASNFYISYFLLQGLSIPGGA 531

Query: 478 IMQPFFLLRNILKKFICRIKNNPPN------GTLSFP-YQTEVPRLLLFGFLGFICSVMA 530
           ++Q   LL   L K + RI +N P         LS P + T  P   L   +    S++A
Sbjct: 532 LLQIVTLL---LSKVLGRIFDNTPRKKWNRWNQLSAPSWGTVYPVYSLLVTIMICYSIIA 588

Query: 531 PLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFG 590
           P+I+ F  + FVL Y  Y   +I V   + ++ G+ +P A   +   L L ++  +G+F 
Sbjct: 589 PIIIGFAAVAFVLIYFAYSYNLIYVLGHNADAKGRNYPRALFQVFVGLYLAEVCLIGLFV 648

Query: 591 IKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDE 639
           + K+  A+      +  T+  + Y + +F P    +    +  + ++ E
Sbjct: 649 LAKNWGATVLEAVFLGFTVACHLYFKYKFLPLMDAVPISAIESVSERPE 697

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12252|PHM7_YEAST Phosphate metabolism protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHM7 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 156/358 (43%), Gaps = 30/358 (8%)

Query: 346 LLTQLEQLSHAFPFLKGMFK-KKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVS 404
           +++ +  L+   PFL+ +     F+  V+TG LP++ L++ +   PP +++   + G V+
Sbjct: 407 IISNVNFLTDKVPFLRFINNMPTFLMGVITGLLPTIALVVLMSLVPPFIVMLGKLSGCVT 466

Query: 405 HSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKH----LAEAIPNQVG 460
                  +      F +  +F V   + S     + + S+ D P+     LA  +P    
Sbjct: 467 RQETDLYSQAWYYAFAVIQIFLVVTATSSAS---STVDSIIDRPRSAMTLLANNLPKASN 523

Query: 461 FFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLF- 519
           F++ Y +  G    +  I+Q   LL   L K + R+ ++ P    +       PR+ +  
Sbjct: 524 FYIMYFILKGLTGPTWTILQAVNLL---LSKVLGRVLDSTPRQKWNRYNTLATPRMGIVY 580

Query: 520 -GFLGFIC-----SVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKT 573
            G    +C     S++AP++L F  +   L Y+ Y   +  V+  S++  G+ +P A   
Sbjct: 581 PGIEILVCIYICYSIIAPILLFFSTVMLTLLYVAYLYNLNYVFGFSFDLKGRNYPRALFQ 640

Query: 574 IIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQ 633
           I   + L+++  LG+F + K+       +  IV T L + Y +++F P F  +    +  
Sbjct: 641 IFVGIYLSEVCLLGLFIMAKTWGPLVLEVFWIVVTALAHIYMKRKFIPLFDAVPLSAIRH 700

Query: 634 MDQQ--------DEQGGRMEEIYQQLKFAYCQFR----LISLDLCNIRQADQQRDRDG 679
              +        D     +++I  ++K  Y Q      L  +   ++++A+   D DG
Sbjct: 701 ARGEPGYSYPTSDLGLQEIKDIADEMKGKYEQDNTHGILTPVTKDDLKKANLIPDNDG 758

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9P1W3|TM63C_HUMAN Transmembrane protein 63C OS=Homo sapiens GN=TMEM63C PE=2 SV=1

 Score = 66.6 bits (161), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 137/636 (21%), Positives = 245/636 (38%), Gaps = 139/636 (21%)

Query: 8   TSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKN-----YPPSLLRYLPSP 62
           T + +N A+ VL+ ++YS LRK   +       RLAL     +     Y     +  PS 
Sbjct: 40  TVLCLNIALWVLVLVVYSFLRKAAWDYG-----RLALLIHNDSLTSLIYGEQSEKTSPSE 94

Query: 63  -------------SWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVIC---M 106
                        SW   +    ++D++   G DA ++   IVF   +     +IC   +
Sbjct: 95  TSLEMERRDKGFCSWFFNSITMKDEDLINKCGDDARIY---IVFQYHLIIFVLIICIPSL 151

Query: 107 FLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFA--LYVITCSACGLLYF 164
            ++LP+NY G  +   D SS      TI NV   S+ LW H      Y IT      ++ 
Sbjct: 152 GIILPINYTGSVL---DWSSHFART-TIVNVSTESKLLWLHSLLSFFYFIT----NFMFM 203

Query: 165 EHKSISRTRLAYITGSPPNPSH---FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSH 221
            H  +         G  P  S     T+++  VP   E    E + + F + Y  S ++ 
Sbjct: 204 AHHCL---------GFAPRNSQKVTRTLMITYVPKDIED--PELIIKHFHEAYPGSVVTR 252

Query: 222 HMVHRSSRVQRL--MNDAEKIC---RVFKGVSAEQKSK------PCLLPCFCGAPNSFEI 270
             VH    V+ L  ++D  +     R+F    A++  K      PC   CFC     F+ 
Sbjct: 253 --VHFCYDVRNLIDLDDQRRHAMRGRLFYTAKAKKTGKVMIRIHPCARLCFCKCWTCFKE 310

Query: 271 LSNE------PDNVRGNIGLDISNLATEKENAVAFVCFK-TRYAAVVAAEILHSE----- 318
           +  E       + +      +++ +  ++ + + FV F+ +R A  V  +  + +     
Sbjct: 311 VDAEQYYSELEEQLTDEFNAELNRVPLKRLDLI-FVTFQDSRMAKRVRKDYKYVQCGVQP 369

Query: 319 ---------NPMLWVTEMAPEPNDVLWSNLSIPYRQ------------------------ 345
                        W   MAP P D++W +LS+  R+                        
Sbjct: 370 QQSSVTTIVKSYYWRVTMAPHPKDIIWKHLSV--RRFFWWARFIAINTFLFFLFFFLTTP 427

Query: 346 --LLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSV 403
             ++  ++  +   P       +K  + +VT + PSV+L  F    P  +   + +E   
Sbjct: 428 AIIMNTIDMYNVTRPI------EKLQNPIVTQFFPSVMLWGFTVILPLIVYFSAFLE--- 478

Query: 404 SHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTK-LSSVKDVPKHLAEA-------- 454
           +H  R     + V    I+ VF V +L    +  L   L  + D+  +L +A        
Sbjct: 479 AHWTRSSQNLVMVHKCYIFLVFMVVILPSMGLTSLDVFLRWLFDI-YYLEQASIRFQCVF 537

Query: 455 IPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIK----NNPPNGTLSFPYQ 510
           +P+   FF+ YV+T+      +E+++   L     + F  R +    N   N  + F + 
Sbjct: 538 LPDNGAFFVNYVITAALLGTGMELLRLGSLFCYSTRLFFSRSEPERVNIRKNQAIDFQFG 597

Query: 511 TEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYL 546
            E   ++    +    S+  P+I+PF L+Y  + +L
Sbjct: 598 REYAWMMNVFSVVMAYSITCPIIVPFGLLYLCMKHL 633

Homo sapiens (taxid: 9606)

>sp|O94886|TM63A_HUMAN Transmembrane protein 63A OS=Homo sapiens GN=TMEM63A PE=2 SV=3

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 133/651 (20%), Positives = 249/651 (38%), Gaps = 104/651 (15%)

Query: 8   TSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSPS---- 63
           T + I+ +  + L L++S++R++  +       R+AL SE  +   S  + L S S    
Sbjct: 52  TVLLIDVSCFLFLILVFSIIRRRFWDYG-----RIALVSEADS--ESRFQRLSSTSSSGQ 104

Query: 64  -----------WVVKAWETTEDDILALGGMDA---LVFVRIIVFSIRIFCIAAVICMFLV 109
                      W+   +   +D IL   G DA   L F R I+F   +  + + + + ++
Sbjct: 105 QDFENELGCCPWLTAIFRLHDDQILEWCGEDAIHYLSFQRHIIF---LLVVVSFLSLCVI 161

Query: 110 LPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSI 169
           LPVN  G  +   D    +    TIAN++  ++ LW H     +      G +    +SI
Sbjct: 162 LPVNLSGDLL---DKDPYSFGRTTIANLQTDNDLLWLHTIFAVIYLFLTVGFMRHHTQSI 218

Query: 170 SRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSR 229
                        N    T+ +  +P  A +   ES   F   Y     +   + +  ++
Sbjct: 219 KYKE--------ENLVRRTLFITGLPRDARKETVES--HFRDAYPTCEVVDVQLCYNVAK 268

Query: 230 VQRLMND---AEKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEILSNEPDNV---RGNIG 283
           +  L  +    EK    +  +  +   +  + P  CG     E+L  E ++       + 
Sbjct: 269 LIYLCKEKKKTEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMK 328

Query: 284 LDISNLATEKENAV-------AFVCFKTRYAAVVAAEIL------------------HSE 318
             +    TE+E  V       AFV F+ +  A    +                    HS 
Sbjct: 329 DRLLERITEEERHVQDQPLGMAFVTFQEKSMATYILKDFNACKCQSLQCKGEPQPSSHSR 388

Query: 319 N--PMLWVTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFP-----------FLKGMFK 365
                 W    A +P D+ W NLSI   +   Q   ++                L  M K
Sbjct: 389 ELYTSKWTVTFAADPEDICWKNLSIQGLRWWLQWLGINFTLFLGLFFLTTPSIILSTMDK 448

Query: 366 -------KKFISHVVTGYLPSVILILFLYAAPPTMMVFSTI-EGSVSHSGRKKSACIKVL 417
                      + +++ + P+++L  F  A  P+++ +ST+ E   + SG  +    KV 
Sbjct: 449 FNVTKPIHALNNPIISQFFPTLLLWSF-SALLPSIVYYSTLLESHWTKSGENQIMMTKVY 507

Query: 418 YFTIWNVFFVNVLSGSVIG-----QLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWA 472
            F I+ V  +  L  + +         K SS   +       +P+Q  FF+ YV+ S + 
Sbjct: 508 IFLIFMVLILPSLGLTSLDFFFRWLFDKTSSEASIRLECV-FLPDQGAFFVNYVIASAFI 566

Query: 473 SLSVEIMQ-PFFLL---RNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSV 528
              +E+++ P  +L   R I+ K     +N   N    + +      +L    +    S+
Sbjct: 567 GNGMELLRLPGLILYTFRMIMAKTAADRRNVKQNQAFQYEFGAMYAWMLCVFTVIVAYSI 626

Query: 529 MAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLV 579
             P+I PF LIY +L ++V ++ +  VY  +    G ++   ++ + A ++
Sbjct: 627 TCPIIAPFGLIYILLKHMVDRHNLYFVYLPAKLEKGIHFAAVNQALAAPIL 677

Homo sapiens (taxid: 9606)

>sp|Q5R826|TM63A_PONAB Transmembrane protein 63A OS=Pongo abelii GN=TMEM63A PE=2 SV=1

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 131/651 (20%), Positives = 248/651 (38%), Gaps = 104/651 (15%)

Query: 8   TSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSPS---- 63
           T + I+ +  + L L++S++R++  +       R+AL SE  + P    + L S S    
Sbjct: 52  TVLLIDVSCFLFLILVFSIIRRRFWDYG-----RIALVSEADSEPR--FQRLSSTSSSGQ 104

Query: 64  -----------WVVKAWETTEDDILALGGMDA---LVFVRIIVFSIRIFCIAAVICMFLV 109
                      W+   +   +D IL   G DA   L F R I+F   +  + + + + ++
Sbjct: 105 QDFENELGCCPWLTAIFRLHDDQILEWCGEDAIHYLSFQRHIIF---LLVVVSFLSLCVI 161

Query: 110 LPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSI 169
           LPVN  G  +   D    +    TIAN++  ++ LW H     +      G +    +SI
Sbjct: 162 LPVNLSGDLL---DKDPYSFGRTTIANLQTDNDLLWLHTIFAVIYLFLTVGFMRHHTQSI 218

Query: 170 SRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSR 229
                        N    T+ +  +P  A +   ES   F   Y     +   + +  ++
Sbjct: 219 KYKE--------ENLVRRTLFITGLPRDARKETVES--HFRDAYPTCEVVDVQLCYNVAK 268

Query: 230 VQRLMND---AEKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEILSNEPDNV---RGNIG 283
           +  L  +    EK    +  +  +   +  + P  CG     E+   E ++       + 
Sbjct: 269 LIYLCKERKKTEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVQGCEWEDAISYYTRMK 328

Query: 284 LDISNLATEKENAV-------AFVCFKTRYAAVVAAEIL------------------HSE 318
             +    TE+E  V       AFV F+ +  A    +                    HS 
Sbjct: 329 DRLLERITEEERHVQDQPLGMAFVTFQEKSMATYILKDFNACKCQSLQCKGEPQPSSHSR 388

Query: 319 N--PMLWVTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFP-----------FLKGMFK 365
                 W    A +P D+ W NLSI   +   Q   ++                L  M K
Sbjct: 389 ELYTSKWTVTFAADPEDICWKNLSIQGLRWWLQWLGINFTLFLGLFFLTTPSIILSTMDK 448

Query: 366 -------KKFISHVVTGYLPSVILILFLYAAPPTMMVFSTI-EGSVSHSGRKKSACIKVL 417
                      + +++ + P+++L  F  A  P+++ +ST+ E   + SG  +    KV 
Sbjct: 449 FNVTKPIHALNNPIISQFFPTLLLWSF-SALLPSIVYYSTLLESHWTKSGENQIMMTKVY 507

Query: 418 YFTIWNVFFVNVLSGSVIG-----QLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWA 472
            F I+ V  +  L  + +         K SS   +       +P+Q  FF+ YV+ S + 
Sbjct: 508 IFLIFMVLILPSLGLTSLDFFFRWLFDKTSSEASIRLECV-FLPDQGAFFVNYVIASAFI 566

Query: 473 SLSVEIMQ-PFFLL---RNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSV 528
              +E+++ P  +L   R I+ K     +N   N    + +      +L    +    S+
Sbjct: 567 GNGMELLRLPGLILYTFRMIMAKTAADRRNVKQNQAFQYEFGAMYAWMLCVFTVIMAYSI 626

Query: 529 MAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLV 579
             P+I PF LIY +L ++V ++ +  +Y  +    G ++   ++ + A ++
Sbjct: 627 TCPIIAPFGLIYILLKHMVDRHNLYFIYLPAKLEKGIHFAAVNQALAAPIL 677

Pongo abelii (taxid: 9601)

>sp|Q91YT8|TM63A_MOUSE Transmembrane protein 63A OS=Mus musculus GN=Tmem63a PE=2 SV=1

 Score = 62.8 bits (151), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 118/562 (20%), Positives = 219/562 (38%), Gaps = 92/562 (16%)

Query: 64  WVVKAWETTEDDILALGGMDA---LVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMI 120
           W+   +   +D IL   G DA   L F R I+F   +  + + + + ++LPVN  G +++
Sbjct: 115 WLTAIFRLHDDQILEWCGEDAIHYLSFQRHIIF---LLVVISFLSLCVILPVNLSG-DLL 170

Query: 121 HHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGS 180
             D  S      TIAN++  ++ LW H     +      G ++   +SI     + +   
Sbjct: 171 GKDPYS--FGRTTIANLQTDNDLLWLHTVFSVIYLFLTVGFMWHHTRSIRYKEESLVRQ- 227

Query: 181 PPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMND---A 237
                  T+ +  +P  A +   ES   F   Y     +   + +  +++  L  +    
Sbjct: 228 -------TLFITGLPREARKETVES--HFRDAYPTCEVVDVQLCYSVAKLIYLCKERKKT 278

Query: 238 EKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEILSNEPDN-----VRGNIGLDISNLATE 292
           EK    +  + A+   +  + P  CG     E+   E ++      R N  L +  +  E
Sbjct: 279 EKSLTYYTNLQAKTGRRTLINPKPCGQFCCCEVQGCEREDAISYYTRMNDSL-LERITAE 337

Query: 293 KEN------AVAFVCFKTRYAAVVAAEILHSENPML-----------------------W 323
           +         +AFV F+ +    +A  IL   N                          W
Sbjct: 338 ESRVQDQPLGMAFVTFREK---SMATYILKDFNACKCQGLRCKGEPQPSSYSRELCVSKW 394

Query: 324 VTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFPFLKGMF-----------KKKFI--- 369
               A  P D+ W NLSI  + +   L+ L   F     +F             KF    
Sbjct: 395 TVTFASYPEDICWKNLSI--QGVRWWLQWLGINFSLFVVLFFLTTPSIIMSTMDKFNVTK 452

Query: 370 ------SHVVTGYLPSVILILFLYAAPPTMMVFSTI-EGSVSHSGRKKSACIKVLYFTIW 422
                 + V++ + P+++L  F  A  P+++ +ST+ E   + SG  +    KV  F I+
Sbjct: 453 PIHALNNPVISQFFPTLLLWSF-SALLPSIVYYSTLLESHWTRSGENRIMVSKVYIFLIF 511

Query: 423 NVFFVNVLSGSVIG----QLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEI 478
            V  +  L  + +      L   +S +   +     +P+Q  FF+ YV+ S +    +E+
Sbjct: 512 MVLILPSLGLTSLDFFFRWLFDKTSSETSIRLECVFLPDQGAFFVNYVIASAFIGSGMEL 571

Query: 479 MQ-PFFLL---RNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLIL 534
           ++ P  +L   R I+ K     +N   N    + +      +L    +    S+  P+I+
Sbjct: 572 LRLPGLILYTFRMIMAKTAADRRNVKQNQAFEYEFGAMYAWMLCVFTVIMAYSITCPIIV 631

Query: 535 PFLLIYFVLAYLVYKNQIINVY 556
           PF LIY +L ++V ++ +   Y
Sbjct: 632 PFGLIYILLKHMVDRHNLYFAY 653

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
224067148	736	predicted protein [Populus trichocarpa]	0.974	0.927	0.618	0.0
255537944	731	conserved hypothetical protein [Ricinus	0.982	0.942	0.592	0.0
356577692	750	PREDICTED: uncharacterized membrane prot	0.988	0.924	0.567	0.0
449450318	743	PREDICTED: uncharacterized membrane prot	0.938	0.885	0.595	0.0
302142147	722	unnamed protein product [Vitis vinifera]	0.975	0.947	0.601	0.0
225458930	717	PREDICTED: uncharacterized membrane prot	0.968	0.947	0.605	0.0
356509803	744	PREDICTED: uncharacterized membrane prot	0.977	0.920	0.557	0.0
297840655	764	hypothetical protein ARALYDRAFT_893642 [	0.942	0.865	0.595	0.0
186491790	746	lipase/hydrolase [Arabidopsis thaliana]	0.974	0.915	0.580	0.0
297849330	761	hypothetical protein ARALYDRAFT_471124 [	0.934	0.860	0.576	0.0

>gi|224067148|ref|XP_002302379.1| predicted protein [Populus trichocarpa] gi|222844105|gb|EEE81652.1| predicted protein [Populus trichocarpa]

 Score =  898 bits (2321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/719 (61%), Positives = 539/719 (74%), Gaps = 36/719 (5%)

Query: 1   MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPP-SLLRYL 59
           M++ A LTS  IN+ ++VLLF LYS+LRKQP N  VYFG RLA  + R +    S  R++
Sbjct: 1   MDIGALLTSAAINTGLSVLLFSLYSILRKQPSNTIVYFGRRLASLNNRNSRNHFSFERFV 60

Query: 60  PSPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEM 119
           PSPSW+VKAWETTE++ILA+GG+DA+VF RI+VFSIR+F IAAV C+FLVLPVNYYG+EM
Sbjct: 61  PSPSWIVKAWETTENEILAIGGLDAVVFQRILVFSIRVFSIAAVTCLFLVLPVNYYGQEM 120

Query: 120 IHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITG 179
            H  I +E+L +FTIANVKE S WLW HC ALY+I+CSAC LLYFE+KSI++ RLA+IT 
Sbjct: 121 KHKHIHAESLNVFTIANVKEGSRWLWAHCLALYIISCSACVLLYFEYKSITKMRLAHITT 180

Query: 180 SPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEK 239
           SPPNPSHFT+LVR++P+S  +SYS SVK+FF  YYA SYLSH +V+R   VQ+LM DAEK
Sbjct: 181 SPPNPSHFTILVRSIPYSVGESYSNSVKKFFTNYYASSYLSHQIVYRCGLVQKLMVDAEK 240

Query: 240 ICRVFKGVSAEQKS-KPCLLPCFCGAPNSFEILSNEPDNVRGNIGLDISNLAT-EKENAV 297
           IC   K     Q S KPC   C CG   SF++L++EP++V+ +      NLAT + E + 
Sbjct: 241 ICMRIKAAPKGQSSLKPC---CLCGGSTSFKVLTDEPESVKDSFSYSNLNLATRDNERSA 297

Query: 298 AFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL----------- 346
           AFV FKTRYAAVVA ++L S NPM WVTE+APEP+DVLWSNL IP+RQL           
Sbjct: 298 AFVIFKTRYAAVVATQMLQSPNPMSWVTELAPEPHDVLWSNLCIPFRQLWLRKIATLLAS 357

Query: 347 ----------------LTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAP 390
                           LTQLE+LS  FPFL+G  K+  I+HV+TGYLPSVILILFLY  P
Sbjct: 358 IVFMVLFLAPVTFVQGLTQLEKLSQTFPFLRGFLKQDLINHVLTGYLPSVILILFLYTVP 417

Query: 391 PTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKH 450
           PTMM+FS++EG VSHSGRK+SAC+K+LYFTIWNVFFVN +SG  +     LSSV D+P  
Sbjct: 418 PTMMLFSSVEGPVSHSGRKRSACLKILYFTIWNVFFVNHVSGGFLFAFNMLSSVGDIPVE 477

Query: 451 LAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQ 510
           LA+AIPNQ  FF+TYVLTSGWASLS E+MQPF LL N LKK + R   +  +G +SFPY 
Sbjct: 478 LAKAIPNQASFFVTYVLTSGWASLSCEVMQPFSLLCNFLKKHLLRNHEDSSDGLVSFPYH 537

Query: 511 TEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIA 570
           TEVPR+LLFG +GF  SVMAPLILPFLLIYF+LAYLVY+NQI+NVY   YE GGQ WPI 
Sbjct: 538 TEVPRVLLFGLIGFTYSVMAPLILPFLLIYFLLAYLVYRNQIVNVYITKYEGGGQLWPIV 597

Query: 571 HKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQV 630
           H T I SLVLTQ+I+LG+FGIKKSPVASGFTIPLI+ TLLFNEYCRQRFFP F+K  AQV
Sbjct: 598 HNTTIFSLVLTQMISLGVFGIKKSPVASGFTIPLIICTLLFNEYCRQRFFPIFKKNVAQV 657

Query: 631 LTQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQADQQRDRDGIRDSEAETAG 689
           L +MD++DEQ GRMEEI+QQL  AYCQ  L S + C   ++  +  +D IR  E   +G
Sbjct: 658 LLEMDRRDEQSGRMEEIHQQLHSAYCQLPLTSHEFC---ESVHKLCQDNIRGREGTKSG 713

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537944|ref|XP_002510037.1| conserved hypothetical protein [Ricinus communis] gi|223550738|gb|EEF52224.1| conserved hypothetical protein [Ricinus communis]

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/726 (59%), Positives = 538/726 (74%), Gaps = 37/726 (5%)

Query: 1   MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLP 60
           M+++A LTS GIN  + ++L  LYS+LRKQP N  VYFG RLA    R     S+ R++P
Sbjct: 1   MDIAALLTSAGINIGLCIVLLSLYSILRKQPSNRVVYFGRRLASVRIRNTDFFSIERFVP 60

Query: 61  SPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMI 120
           SPSW+VKAWETTE++ILA+GG+DAL F R+++FSIR+F IAAVIC+ LVLP+NYYGKEM 
Sbjct: 61  SPSWIVKAWETTEEEILAIGGLDALAFQRMLIFSIRVFSIAAVICLLLVLPMNYYGKEMQ 120

Query: 121 HHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGS 180
           H  I SE+L++FTI NVKE S WLW HC ALY+I+C+AC LLYFE+KSI+  RLA+IT S
Sbjct: 121 HKWIPSESLDVFTIGNVKEGSRWLWAHCLALYIISCAACVLLYFEYKSITEMRLAHITKS 180

Query: 181 PPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKI 240
             N SHFT+LVR+VPWS  +SYSE+VK+FF  YYA SYLSH MV++   +Q+LM DAEK+
Sbjct: 181 SLNASHFTILVRSVPWSPGESYSETVKKFFANYYASSYLSHQMVYKRGLIQKLMVDAEKM 240

Query: 241 CRVFKGVSAEQKS-KPCLLPCFCG-APNSFEILSNEPDNVRGNIGLDISNLAT-EKENAV 297
           C +   V  ++ S +PC   C CG +  SF+IL++E ++V+ +I +   N+AT E E A 
Sbjct: 241 CSMIIPVPIDRPSLRPC---CLCGKSTTSFKILASEAESVKDSISIADLNVATPENECAA 297

Query: 298 AFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL----------- 346
           AFV FKTRY+AVVA ++L S NPMLWVTE+APEP+DVLWSNLSIPY+QL           
Sbjct: 298 AFVFFKTRYSAVVATQMLQSPNPMLWVTELAPEPHDVLWSNLSIPYKQLWLRKIATLLAA 357

Query: 347 ----------------LTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAP 390
                           LTQL++LS  FPFL+G+ KK F++HVVTGYLPSVIL+LFLY  P
Sbjct: 358 IVFMFLFLIPVTFVQGLTQLDKLSRTFPFLRGLLKKDFMNHVVTGYLPSVILMLFLYTVP 417

Query: 391 PTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKH 450
           P MM+FS++EG VS SGRKKSA +K+LYFTIWNVFFVNVLSGSVI QL   SSV+D+P  
Sbjct: 418 PVMMLFSSVEGPVSRSGRKKSAGLKILYFTIWNVFFVNVLSGSVISQLNVFSSVRDIPME 477

Query: 451 LAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQ 510
           LA+AIP Q  FFMTYVLTSGWA L+ E+MQ F L  N+ KKFI R   +  +  ++FPY 
Sbjct: 478 LAKAIPTQASFFMTYVLTSGWAGLACEVMQLFPLSCNMFKKFILRNDKDSSDDLMTFPYH 537

Query: 511 TEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIA 570
           TEVPR+LLFG +GF CS+MAPLILPFLL+YF LAYLVY+NQI+NVY   YE GG +WPI 
Sbjct: 538 TEVPRVLLFGLIGFTCSIMAPLILPFLLVYFSLAYLVYRNQILNVYIPKYEGGGHFWPIV 597

Query: 571 HKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQV 630
           H T I SLVLTQIIALG+FGIK+SPVASGFT PL++GTLLFNEYCR RF P F K   ++
Sbjct: 598 HNTTIFSLVLTQIIALGVFGIKESPVASGFTFPLVIGTLLFNEYCRLRFSPIFDKDPIKI 657

Query: 631 LTQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQADQQ---RDRDGIRDSEAET 687
           L +MD+ DEQ GRM++IYQQL  AYCQF + + + C   Q  Q    +D D ++ S  E 
Sbjct: 658 LIEMDRDDEQSGRMDQIYQQLHSAYCQFPITAHEFCGSAQTPQHKCGKDPDDVK-SGKEI 716

Query: 688 AGLTEN 693
           + ++E 
Sbjct: 717 SEVSET 722

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577692|ref|XP_003556958.1| PREDICTED: uncharacterized membrane protein YLR241W-like [Glycine max]

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/724 (56%), Positives = 534/724 (73%), Gaps = 31/724 (4%)

Query: 1   MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLP 60
           M+++A LTS GIN A+ V+LF  YSVLRKQP N+NVYFG RLA    R+     L R++P
Sbjct: 1   MDIAALLTSAGINIAVCVVLFSFYSVLRKQPSNVNVYFGRRLASQHSRR-IDLCLERFVP 59

Query: 61  SPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMI 120
           SPSW++KAWET+ED+ILA+GG+DA+VFVRI+VFSIR+F IAAVIC  LVLPVNY+G + +
Sbjct: 60  SPSWILKAWETSEDEILAIGGLDAVVFVRILVFSIRVFSIAAVICTILVLPVNYHGMDRM 119

Query: 121 HHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGS 180
           + +I  E+LE+FTI NVKE S+WLW HC ALY+IT SAC LLYFE+KSI+  RL +I GS
Sbjct: 120 YKNIPLESLEVFTIENVKEGSKWLWAHCLALYIITLSACALLYFEYKSITNLRLLHIIGS 179

Query: 181 PPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKI 240
           PPNPSHFT+LVR++PWS+E+SY E+VK+FF  Y+A +YLSH MV++S +VQ+L +DAE +
Sbjct: 180 PPNPSHFTILVRSIPWSSEESYCETVKKFFSYYHASTYLSHQMVYKSGKVQKLKDDAEHM 239

Query: 241 CRVFKGVSAEQKSKPCLLPCFC-GAPN-SFEILSNEPDNVRGNI-GLDISNLATEKENAV 297
           C+V +  S E+  KP  + C C GAP  SF+ +S E  +  G     D+     +KE + 
Sbjct: 240 CKVIRDASMERTCKPSFMQCCCSGAPTISFKKISTEMGSTHGRTCNTDLHLDTGKKECSS 299

Query: 298 AFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL----------- 346
           AFV FK+RYAA+ AA++L + NPMLWVT++APEP+DV WSN+ IPYRQL           
Sbjct: 300 AFVFFKSRYAALTAAQVLQTSNPMLWVTDVAPEPHDVYWSNICIPYRQLWIRRIATLAAS 359

Query: 347 ----------------LTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAP 390
                           LTQLE+L   FPFL G+ K+KF++ VVTGYLPSVIL+LFL A P
Sbjct: 360 VAFMLVFLIPVTFVQGLTQLEKLQKMFPFLTGILKEKFVNQVVTGYLPSVILVLFLCAVP 419

Query: 391 PTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKH 450
           P M++FS +EGS+S S RKKSAC KVLYFTIWNVFFVNV +GSVI QL+  SSV D+P  
Sbjct: 420 PVMILFSAVEGSISRSARKKSACFKVLYFTIWNVFFVNVFTGSVISQLSVFSSVTDLPAQ 479

Query: 451 LAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQ 510
           LA+A+P Q  FF TY+L+SGWASL+VE+MQ F LLRN+ ++FI R+K +  +G+LSFPY 
Sbjct: 480 LAKAVPAQATFFTTYILSSGWASLAVEVMQIFPLLRNLFQRFILRLKEDALDGSLSFPYH 539

Query: 511 TEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIA 570
           TEVPR+LLFGFLGF C+++APL+LPFLL+YF +AYLVY+NQIINVY   Y+SGGQ+WPI 
Sbjct: 540 TEVPRILLFGFLGFTCAILAPLMLPFLLVYFFIAYLVYRNQIINVYITKYDSGGQFWPIV 599

Query: 571 HKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQV 630
           H T + SL+ +Q+IALG+FG+K+S VASGFTIPL++GTLLF++YCRQRF P F+  +AQ+
Sbjct: 600 HNTTVFSLLFSQLIALGVFGLKRSSVASGFTIPLLIGTLLFHQYCRQRFLPVFRSNSAQI 659

Query: 631 LTQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQADQQRDRDGIRDSEAETAGL 690
           L  +D++D   GRMEEIY+ L+ AY Q  L+              D+D    S  +    
Sbjct: 660 LIDLDRRDGHSGRMEEIYEHLRSAYNQSSLMPHTTSQPECVSLHEDKDSGPSSSEDMETG 719

Query: 691 TENK 694
            EN+
Sbjct: 720 NENE 723

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450318|ref|XP_004142910.1| PREDICTED: uncharacterized membrane protein C2G11.09-like [Cucumis sativus]

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/695 (59%), Positives = 523/695 (75%), Gaps = 37/695 (5%)

Query: 1   MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLP 60
           ME SA LTSVGIN  I V+LF LYS+LRKQP N+ VYFG ++A    +      L R++P
Sbjct: 1   MEFSALLTSVGINIGICVVLFSLYSILRKQPSNITVYFGRKIATKKLKHCETFCLDRFVP 60

Query: 61  SPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMI 120
           SPSW+VKAWET+E++ILAL G+DA+VF+RII+FSIR+F IAA+ICMFLVLPVNYYG+EM 
Sbjct: 61  SPSWIVKAWETSEEEILALDGLDAVVFLRIIIFSIRVFSIAAIICMFLVLPVNYYGQEMT 120

Query: 121 HHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGS 180
           H  I SE+ +IF I NVK++S+WL  HC ALY+I CSAC LLYFE+ SISR RL +ITGS
Sbjct: 121 HKMIPSESFDIFCIENVKKNSKWLCVHCIALYIICCSACVLLYFEYSSISRLRLIHITGS 180

Query: 181 PPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKI 240
             NPSHFTVLV+++PWS E++YSE++++FF  Y+A +YLSH M++RS  VQ+LM+DAEK+
Sbjct: 181 QKNPSHFTVLVQSIPWSPEETYSETIRKFFSNYHASTYLSHQMIYRSGTVQKLMSDAEKM 240

Query: 241 CRVFKGVSAEQKSKPCLLPCFC-GAPNSFEILSNEPDNVR-----GNIGLDISNLATEKE 294
               K  S E   +     CFC G+ NSF IL +  D+V+     GN+ L    +A+EKE
Sbjct: 241 YNTMKENSVEMHCQKLRGGCFCAGSTNSFTILPSVNDSVKEKKLYGNMDL----VASEKE 296

Query: 295 NAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL-------- 346
            + AFV FKTRYAA++A+ +L S NPM W T +APEP+DV WSNLSIPYRQL        
Sbjct: 297 CSAAFVFFKTRYAALMASSVLQSANPMSWATSLAPEPHDVYWSNLSIPYRQLWIRKIGTL 356

Query: 347 -------------------LTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLY 387
                              +TQLE+L   FPFL+G+ KKK+ S +VTGYLPSV+LILF+Y
Sbjct: 357 VAATGFMIMFLLPVTVVQSMTQLEKLQRTFPFLRGLLKKKYTSELVTGYLPSVVLILFMY 416

Query: 388 AAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDV 447
            APPTMM  S +EG +S SGRK+SAC+KV+YFTIWNVFFVNV +GS IG L+  SSVKD+
Sbjct: 417 LAPPTMMTLSAMEGPISRSGRKRSACLKVVYFTIWNVFFVNVFAGSAIGTLSAFSSVKDI 476

Query: 448 PKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSF 507
           P    +A+P Q GFF+TYVL+SGWASLS E+MQ F L  N  +++I RIK  P    L+F
Sbjct: 477 PAQFGKAVPAQAGFFVTYVLSSGWASLSCEVMQLFSLTWNFFRRWIFRIKIEPFYEPLAF 536

Query: 508 PYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYW 567
           PY TEVPR+LLFGFLGF CS++APLI PF+L YF LAYLVYKNQI+NVY   YESGGQ+W
Sbjct: 537 PYHTEVPRILLFGFLGFTCSILAPLITPFVLFYFFLAYLVYKNQILNVYTSKYESGGQFW 596

Query: 568 PIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIA 627
           PIAH T I ++V+ Q+IALG+FG+K+SPVASGFTIPLIVGT+LF+ YCRQRF P F+  A
Sbjct: 597 PIAHNTTIFAMVVAQVIALGVFGVKESPVASGFTIPLIVGTILFHGYCRQRFRPIFRDTA 656

Query: 628 AQVLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLIS 662
           A+VL +MD++DE+ GRMEE+Y+QL+ AYCQF L++
Sbjct: 657 AEVLIEMDRKDEECGRMEEMYRQLRTAYCQFTLLA 691

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142147|emb|CBI19350.3| unnamed protein product [Vitis vinifera]

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/718 (60%), Positives = 531/718 (73%), Gaps = 34/718 (4%)

Query: 1   MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLP 60
           M+L A LTS GIN A   +L  LYS+LRKQP N++VYFG RLA  S + + P    R++P
Sbjct: 1   MKLYALLTSAGINIAFCAILLSLYSILRKQPSNVSVYFGRRLAQFSPKPHDPFCFERFVP 60

Query: 61  SPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMI 120
           SP W+VKAWET+E++IL++GGMDA+VF+RI+VFSIRIF IAA+IC+FLVLPVNYYG+ + 
Sbjct: 61  SPGWMVKAWETSEEEILSVGGMDAVVFLRIVVFSIRIFAIAAIICIFLVLPVNYYGQAVH 120

Query: 121 HHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGS 180
           H  I SE+L++FTI N+KE S+WLW HCFALYVI+CSAC LLYFE+KSI+  RLA+ITGS
Sbjct: 121 HGHIPSESLDVFTIGNIKEGSKWLWVHCFALYVISCSACVLLYFEYKSITNMRLAHITGS 180

Query: 181 PPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKI 240
           PPNPSHF VLVR++PWS EQSYS+ VK+FF+ Y+A SYLSH MV  S  V +L+ DA K+
Sbjct: 181 PPNPSHFAVLVRSIPWSPEQSYSDLVKQFFINYHASSYLSHQMVSDSWTVHKLVTDAYKM 240

Query: 241 CRVFKGVSAEQKSKPCLLPC-FCG-APNSFEILSNEPDNVRGNIGLDISNLATEKENAVA 298
               +  S +Q S P L+ C  CG +PNSF+ILSN+P   + ++    S +    E A A
Sbjct: 241 ---LQTSSMKQSSTPSLIRCSICGVSPNSFKILSNDPVKDKVDLDSTTSEVINSHEGASA 297

Query: 299 FVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL------------ 346
           FV FKTRYAAVVA+++L S NPMLWVT++APEP+DV WSNL IPY+QL            
Sbjct: 298 FVFFKTRYAAVVASQVLQSSNPMLWVTDLAPEPHDVYWSNLCIPYKQLWIRRITTLLAAI 357

Query: 347 ---------------LTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPP 391
                          LTQLEQL   FPFL+G+ KK  +S VVTGYLPSVILILFLY  PP
Sbjct: 358 VFMFLFLLPVTFVQGLTQLEQLQQTFPFLRGILKKTIVSQVVTGYLPSVILILFLYTVPP 417

Query: 392 TMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHL 451
           TMM+FS +EGS+S SGRKKSAC K+LYFTIWNVFFVNV SGS+I Q +  SSVKD+P  L
Sbjct: 418 TMMLFSAVEGSISRSGRKKSACCKILYFTIWNVFFVNVFSGSLISQWSVFSSVKDLPTEL 477

Query: 452 AEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQT 511
           A A+P Q  FFMTYVLTSGWAS+S E++Q F LL N   +FI  +K +P N TLSFPY T
Sbjct: 478 ARAVPTQASFFMTYVLTSGWASMSFEVVQVFALLCNYFTRFI--LKKDPSNETLSFPYHT 535

Query: 512 EVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAH 571
           E+P+ LLFG LGF CS++APLILP LL+YF LAYLVY+NQIINVY   YESGG++WPI H
Sbjct: 536 EIPKALLFGLLGFTCSILAPLILPILLVYFFLAYLVYRNQIINVYISKYESGGKFWPIVH 595

Query: 572 KTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVL 631
            T I SLVL QIIA+G+FG+K+SPV SGFTIPL++GTLLFNEYCRQRF P F+  AA VL
Sbjct: 596 NTTIFSLVLAQIIAIGVFGLKRSPVPSGFTIPLVIGTLLFNEYCRQRFRPIFENHAATVL 655

Query: 632 TQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQADQQRDRDGIRDSEAETAG 689
            +MD+QDE+ GRME+I+ QL  AY Q +  S D     +++   D D I+D E    G
Sbjct: 656 IEMDRQDERNGRMEQIHHQLHSAYHQPKRTSQDSSKGERSNHSEDGDSIQDPEDLKPG 713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458930|ref|XP_002283520.1| PREDICTED: uncharacterized membrane protein YLR241W-like [Vitis vinifera]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/718 (60%), Positives = 534/718 (74%), Gaps = 39/718 (5%)

Query: 1   MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLP 60
           M+L A LTS GIN A   +L  LYS+LRKQP N++VYFG RLA  S + + P    R++P
Sbjct: 1   MKLYALLTSAGINIAFCAILLSLYSILRKQPSNVSVYFGRRLAQFSPKPHDPFCFERFVP 60

Query: 61  SPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMI 120
           SP W+VKAWET+E++IL++GGMDA+VF+RI+VFSIRIF IAA+IC+FLVLPVNYYG+ + 
Sbjct: 61  SPGWMVKAWETSEEEILSVGGMDAVVFLRIVVFSIRIFAIAAIICIFLVLPVNYYGQAVH 120

Query: 121 HHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGS 180
           H  I SE+L++FTI N+KE S+WLW HCFALYVI+CSAC LLYFE+KSI+  RLA+ITGS
Sbjct: 121 HGHIPSESLDVFTIGNIKEGSKWLWVHCFALYVISCSACVLLYFEYKSITNMRLAHITGS 180

Query: 181 PPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKI 240
           PPNPSHF VLVR++PWS EQSYS+ VK+FF+ Y+A SYLSH MV  S  V +L+ DA K+
Sbjct: 181 PPNPSHFAVLVRSIPWSPEQSYSDLVKQFFINYHASSYLSHQMVSDSWTVHKLVTDAYKM 240

Query: 241 CRVFKGVSAEQKSKPCLLPC-FCG-APNSFEILSNEPDNVRGNIGLDISNLATEKENAVA 298
               +  S +Q S P L+ C  CG +PNSF+ILSN+P  V+  + LD +   T +E A A
Sbjct: 241 ---LQTSSMKQSSTPSLIRCSICGVSPNSFKILSNDP--VKDKVDLDST---TSEEGASA 292

Query: 299 FVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL------------ 346
           FV FKTRYAAVVA+++L S NPMLWVT++APEP+DV WSNL IPY+QL            
Sbjct: 293 FVFFKTRYAAVVASQVLQSSNPMLWVTDLAPEPHDVYWSNLCIPYKQLWIRRITTLLAAI 352

Query: 347 ---------------LTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPP 391
                          LTQLEQL   FPFL+G+ KK  +S VVTGYLPSVILILFLY  PP
Sbjct: 353 VFMFLFLLPVTFVQGLTQLEQLQQTFPFLRGILKKTIVSQVVTGYLPSVILILFLYTVPP 412

Query: 392 TMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHL 451
           TMM+FS +EGS+S SGRKKSAC K+LYFTIWNVFFVNV SGS+I Q +  SSVKD+P  L
Sbjct: 413 TMMLFSAVEGSISRSGRKKSACCKILYFTIWNVFFVNVFSGSLISQWSVFSSVKDLPTEL 472

Query: 452 AEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQT 511
           A A+P Q  FFMTYVLTSGWAS+S E++Q F LL N   +FI  +K +P N TLSFPY T
Sbjct: 473 ARAVPTQASFFMTYVLTSGWASMSFEVVQVFALLCNYFTRFI--LKKDPSNETLSFPYHT 530

Query: 512 EVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAH 571
           E+P+ LLFG LGF CS++APLILP LL+YF LAYLVY+NQIINVY   YESGG++WPI H
Sbjct: 531 EIPKALLFGLLGFTCSILAPLILPILLVYFFLAYLVYRNQIINVYISKYESGGKFWPIVH 590

Query: 572 KTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVL 631
            T I SLVL QIIA+G+FG+K+SPV SGFTIPL++GTLLFNEYCRQRF P F+  AA VL
Sbjct: 591 NTTIFSLVLAQIIAIGVFGLKRSPVPSGFTIPLVIGTLLFNEYCRQRFRPIFENHAATVL 650

Query: 632 TQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQADQQRDRDGIRDSEAETAG 689
            +MD+QDE+ GRME+I+ QL  AY Q +  S D     +++   D D I+D E    G
Sbjct: 651 IEMDRQDERNGRMEQIHHQLHSAYHQPKRTSQDSSKGERSNHSEDGDSIQDPEDLKPG 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509803|ref|XP_003523635.1| PREDICTED: uncharacterized membrane protein YLR241W-like [Glycine max]

 Score =  825 bits (2132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/721 (55%), Positives = 521/721 (72%), Gaps = 36/721 (4%)

Query: 1   MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLP 60
           M+++A LTS G+N A+ V+LF LYSVLRKQP N+ VYFG R+A +   K+    L R++P
Sbjct: 1   MDIAALLTSAGVNIAVCVVLFSLYSVLRKQPSNVRVYFGRRVA-SRCSKSRDLCLERFVP 59

Query: 61  SPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMI 120
           SP+WV+KAWETT+D++L+ GG+DA+VF R++VFSIR+F +AAVIC  LVLPVNYYG++ I
Sbjct: 60  SPTWVMKAWETTQDEMLSTGGLDAVVFSRMVVFSIRVFSVAAVICTTLVLPVNYYGRDRI 119

Query: 121 HHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGS 180
           H +I  E+LE+FTI NV E S WLW HC ALY+IT +AC LLY E+KSI+  RL +IT S
Sbjct: 120 HKNIPFESLEVFTIENVIEGSRWLWAHCLALYIITLTACSLLYCEYKSITNLRLVHITAS 179

Query: 181 PPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKI 240
            PNPSHFT+LVR +PWS+EQ Y ++VK+FF  Y+A +YLSH +V++S   Q+L +D E +
Sbjct: 180 SPNPSHFTILVRGIPWSSEQLYCDTVKKFFAFYHAQTYLSHQIVYKSGTFQKLKDDTEYM 239

Query: 241 CRVFKGV--SAEQKSKPCLLPC-FCG-APNSFEILSNEPDNVRGNIG-LDISNLATEKEN 295
           C++  G   S E   KP    C FCG + NSF+I+SN+ D++ G     D+   A +KE 
Sbjct: 240 CKMLSGSCGSMELPCKPSFTQCYFCGGSTNSFKIISNDIDSMHGRTSYTDLHTNARKKEC 299

Query: 296 AVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL--------- 346
           A AFV FK+RYAA+  A+ L + NPMLWVT++APEP DV W+NL IPYRQL         
Sbjct: 300 AAAFVFFKSRYAALTVAQNLQTSNPMLWVTDLAPEPPDVYWANLCIPYRQLWIRKISIFV 359

Query: 347 ------------------LTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYA 388
                             LTQL++L   FPFL G  +KKF+  +VTGYLPS IL+LFLYA
Sbjct: 360 ASVTFVLVFLIPVTFAQGLTQLDKLERMFPFLAGTLQKKFVMQLVTGYLPSAILVLFLYA 419

Query: 389 APPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVP 448
            PP MM+FST+EGSVS SGRK+SAC K LYFTIWNVFFVNV +GSVI QL   SS+ ++P
Sbjct: 420 VPPVMMLFSTVEGSVSRSGRKRSACTKFLYFTIWNVFFVNVFAGSVISQLAVFSSITELP 479

Query: 449 KHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFP 508
             LA+A+P Q  FF TYVL+SGWASL+ E MQ + L  N+ ++FI   K +  NG L+FP
Sbjct: 480 AQLAKAVPVQATFFTTYVLSSGWASLAFETMQLYPLFCNLFQRFILGYKEDTMNGNLTFP 539

Query: 509 YQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWP 568
           Y TEVPR+LLFGFLGF CS++APLILPFLL YFVLAY VY+NQI+NVY + Y+SGGQ WP
Sbjct: 540 YHTEVPRILLFGFLGFTCSILAPLILPFLLFYFVLAYFVYRNQILNVYIRKYDSGGQLWP 599

Query: 569 IAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAA 628
           +AH T + SL+  Q+IALG+FG+K+SPVASGFTIPL++ T+LFN+YCRQRF P FQ+ A 
Sbjct: 600 LAHNTTVFSLLFAQVIALGVFGLKQSPVASGFTIPLLICTILFNQYCRQRFLPVFQRNAT 659

Query: 629 QVLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQADQQRDRDGIRDSEAETA 688
           QVL  MD++DE+ GRM++IY+Q++ AYCQ    +   C    +  Q DR+ +R  E    
Sbjct: 660 QVLIDMDRRDERCGRMDQIYEQVQSAYCQATHSTQSECF---SSHQGDREHVRTPEELET 716

Query: 689 G 689
           G
Sbjct: 717 G 717

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840655|ref|XP_002888209.1| hypothetical protein ARALYDRAFT_893642 [Arabidopsis lyrata subsp. lyrata] gi|297334050|gb|EFH64468.1| hypothetical protein ARALYDRAFT_893642 [Arabidopsis lyrata subsp. lyrata]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/693 (59%), Positives = 509/693 (73%), Gaps = 32/693 (4%)

Query: 1   MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLP 60
           ME+SA LTS GIN +I ++L  LYS+LRKQP N  VYFG RL     R+  P    R++P
Sbjct: 1   MEISALLTSAGINISICIVLLSLYSILRKQPSNYCVYFGRRLVCGGARRYDPFWYERFVP 60

Query: 61  SPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMI 120
           SPSW+VKAWET+ED++LA  G+DA+VF+R+++FSIRIF I AVIC+  VLPVNYYG+ M+
Sbjct: 61  SPSWLVKAWETSEDELLAAAGLDAVVFLRMVLFSIRIFFIVAVICIAFVLPVNYYGQPMV 120

Query: 121 HHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGS 180
           H +I  E+ E+FTI N+KE S+WLW HC ALY+IT +AC LLYFE+++I++ RL +ITG 
Sbjct: 121 HKEIHLESSEVFTIENLKEGSKWLWVHCLALYIITSAACLLLYFEYRTIAKMRLGHITGC 180

Query: 181 PPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKI 240
              PS FTVL+RA+PWS EQSYS+++ +FF  YY+ SY+SH MV+ +  +QRL+ +AE++
Sbjct: 181 ASKPSQFTVLIRAIPWSPEQSYSDTLSKFFTNYYSSSYVSHQMVYHNGIIQRLLREAERM 240

Query: 241 CRVFKGVSAEQKSKPCLLPC-FCGAP---NSFEILSNEPDNVRGNIGLDISNLATEKENA 296
           C+  K VS E   KP L PC FCG P   NSF ILSNE D+V+G    +++   TE+E  
Sbjct: 241 CQTLKHVSPEINCKPSLKPCIFCGGPTATNSFHILSNEADSVKGMELGELTMTTTEQERP 300

Query: 297 VAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL---------- 346
            AFV FKTRY A+V +E+L S NPMLWVT++APEP+DV W NL+IPYRQL          
Sbjct: 301 AAFVFFKTRYDALVVSEVLQSSNPMLWVTDLAPEPHDVYWKNLNIPYRQLWIRKIATLVG 360

Query: 347 -----------------LTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAA 389
                            LTQLEQLSHAFPFL+G+ +K+FIS V+TGYLPSVILILF YA 
Sbjct: 361 AVAFMFVFLIPVTFIQGLTQLEQLSHAFPFLRGILRKQFISQVITGYLPSVILILFFYAV 420

Query: 390 PPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPK 449
           PP MM FS +EG +S S RKKSACIKVLYFTIWNVFFVN+LSGSVI QL   SSV+D+P 
Sbjct: 421 PPLMMYFSALEGCISRSIRKKSACIKVLYFTIWNVFFVNILSGSVIRQLNVFSSVRDIPA 480

Query: 450 HLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPY 509
            LA ++P Q GFFMTY  TSGWASL+ EIMQP  L+ N++ K + +   +    TL FPY
Sbjct: 481 QLARSVPTQAGFFMTYCFTSGWASLACEIMQPMALIWNLVAKVVTK-NEDESYETLRFPY 539

Query: 510 QTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPI 569
            TE+PRLLLFG LGF  SV+APLILPFLLIYF LAYL+YKNQI+NVY   YESGGQYWPI
Sbjct: 540 HTEIPRLLLFGLLGFTNSVIAPLILPFLLIYFFLAYLIYKNQILNVYITKYESGGQYWPI 599

Query: 570 AHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQ 629
            H T I SL+LTQIIALG FG+K S VASGFTIPLI+ TLLF+EYCRQRF P F K  AQ
Sbjct: 600 FHNTTIFSLILTQIIALGFFGLKLSTVASGFTIPLILLTLLFSEYCRQRFAPIFNKNPAQ 659

Query: 630 VLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLIS 662
           VL  MD+ DE  G+MEE++++L   Y Q  L S
Sbjct: 660 VLIDMDRADEISGKMEELHKKLHNVYSQIPLHS 692

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186491790|ref|NP_683440.2| lipase/hydrolase [Arabidopsis thaliana] gi|332195433|gb|AEE33554.1| lipase/hydrolase [Arabidopsis thaliana]

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/717 (58%), Positives = 514/717 (71%), Gaps = 34/717 (4%)

Query: 1   MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLP 60
           ME+SA LTS GIN +I ++L  LYS+LRKQP N  VYFG RL     R+  P    R++P
Sbjct: 1   MEISALLTSAGINISICIVLLSLYSILRKQPANYCVYFGRRLVCGGARRYDPFWYERFVP 60

Query: 61  SPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMI 120
           SPSW+VKAWET+ED++LA  G+DA+VF+R+++FSIRIF I AVIC+  VLPVNYYG+ M+
Sbjct: 61  SPSWLVKAWETSEDELLAAAGLDAVVFLRMVIFSIRIFFIVAVICIAFVLPVNYYGQPMV 120

Query: 121 HHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGS 180
           H +I  E+ E+FTI N+KE S+WLW HC ALY+IT +AC LLYFE+ +I++ RL +ITG 
Sbjct: 121 HKEIHLESSEVFTIENLKEGSKWLWVHCLALYIITSAACLLLYFEYSTIAKMRLGHITGC 180

Query: 181 PPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKI 240
              PS FTVL+RA+PWS EQSYS+++ +FF  YY+ SY+SH MV+ +  +QRL+ DAE++
Sbjct: 181 ASKPSQFTVLIRAIPWSPEQSYSDTLSKFFTNYYSSSYVSHQMVYHNGIIQRLLRDAERM 240

Query: 241 CRVFKGVSAEQKSKPCLLPC-FCGAP---NSFEILSNEPDNVRG-NIG-LDISNLATEKE 294
           C+  K VS E   KP L PC FCG P   +SF ILSNE D+V+G  +G L ++   TE+E
Sbjct: 241 CQTLKHVSPEINCKPSLRPCTFCGGPTATSSFHILSNEADSVKGMELGELTMTTTTTEQE 300

Query: 295 NAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL-------- 346
            + AFV FKTRY A+V +E+L S NPMLWVT++APEP+DV W NL+IPYRQL        
Sbjct: 301 RSAAFVFFKTRYDALVVSEVLQSSNPMLWVTDLAPEPHDVYWKNLNIPYRQLWIRKIATL 360

Query: 347 -------------------LTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLY 387
                              LTQL QLSHAFPFL+G+  K FI+ V+TGYLPSVILILF Y
Sbjct: 361 VGAVAFMFVFLIPVTFIQGLTQLVQLSHAFPFLRGILSKNFINQVITGYLPSVILILFFY 420

Query: 388 AAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDV 447
           A PP MM FS +EG +S S RKKSACIKVLYFTIWNVFFVN+LSGSVI QL   SSV+D+
Sbjct: 421 AVPPLMMYFSALEGCISRSIRKKSACIKVLYFTIWNVFFVNILSGSVIRQLNVFSSVRDI 480

Query: 448 PKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSF 507
           P  LA A+P Q GFFMTY  TSGWASL+ EIMQP  L+ N++ K + +   +    TL F
Sbjct: 481 PAQLARAVPTQAGFFMTYCFTSGWASLACEIMQPMALIWNLVAKVVTK-NEDESYETLRF 539

Query: 508 PYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYW 567
           PY TE+PRLLLFG LGF  SV+APLILPFLLIYF LAYL+YKNQI+NVY   YESGGQYW
Sbjct: 540 PYHTEIPRLLLFGLLGFTNSVIAPLILPFLLIYFFLAYLIYKNQILNVYITKYESGGQYW 599

Query: 568 PIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIA 627
           PI H T I SL+LTQIIALG FG+K S VASGFTIPLI+ TLLF+EYCRQRF P F K  
Sbjct: 600 PIFHNTTIFSLILTQIIALGFFGLKLSTVASGFTIPLILLTLLFSEYCRQRFAPIFNKNP 659

Query: 628 AQVLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLISLDLCNIRQADQQRDRDGIRDSE 684
           AQVL  MD+ DE  G+MEE++++L   Y Q  L S    +  +      +  + D E
Sbjct: 660 AQVLIDMDRADEISGKMEELHKKLHNVYSQIPLHSQKSSSKAECSNPFKKQELPDPE 716

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849330|ref|XP_002892546.1| hypothetical protein ARALYDRAFT_471124 [Arabidopsis lyrata subsp. lyrata] gi|297338388|gb|EFH68805.1| hypothetical protein ARALYDRAFT_471124 [Arabidopsis lyrata subsp. lyrata]

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/687 (57%), Positives = 496/687 (72%), Gaps = 32/687 (4%)

Query: 1   MELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLP 60
           M++S+ LTS GIN    V+L  LYS+LRKQP N  VYFG  L+    +++ P    R+ P
Sbjct: 1   MDVSSLLTSAGINIGTCVVLVSLYSILRKQPANYCVYFGRLLSDGRVKRHDPRWYERFAP 60

Query: 61  SPSWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMI 120
           SPSW+VKAWETTED++LA  G+DA+VF+R+++ SIRIF I AV+C+  VLPVNYYG++  
Sbjct: 61  SPSWLVKAWETTEDEMLASAGLDAVVFIRMVICSIRIFSIVAVVCIAFVLPVNYYGQKTA 120

Query: 121 HHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYITGS 180
           H ++  E+L IFTI N+ + S WLW HC ALY+I+ +AC LLYFE+K+I++ RLA+ITGS
Sbjct: 121 HKEVHLESLVIFTIENLNQRSRWLWVHCLALYIISSAACALLYFEYKNIAKRRLAHITGS 180

Query: 181 PPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKI 240
               SHFTVL+RA+P S +QSYSE+V ++F  YYAPSY+SH MV+R   + RLMN+ +++
Sbjct: 181 ASKQSHFTVLIRAIPQSPDQSYSETVSKYFTNYYAPSYVSHLMVYRDGFIHRLMNETDRM 240

Query: 241 CRVFKGVSAEQKSKPCLLPC-FCG--APNSFEILSNEPDNVRGNIGLDISNLATEKENAV 297
           C+  K VS +    P L  C  CG  A NSF+ILSNE D+V+G +G  ++   TE+E  V
Sbjct: 241 CQAIKHVSPDLSCNPSLKSCALCGPAATNSFQILSNETDSVKGQLGE-LTLTTTEEERPV 299

Query: 298 AFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL----------- 346
           AFV FK+RY A+V +E+L + NPMLWV ++APEP+DV W NL IPYRQL           
Sbjct: 300 AFVFFKSRYDALVVSEVLQTPNPMLWVADLAPEPHDVHWRNLRIPYRQLWMRRIATLVGA 359

Query: 347 ----------------LTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAP 390
                           LTQL+ LS  FPFL+ +  K F+  V+TGYLPSVIL+LF YA P
Sbjct: 360 VAFMFVFLFPVAFVQGLTQLQTLSKNFPFLRDLLHKGFMKQVITGYLPSVILVLFFYAVP 419

Query: 391 PTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKH 450
           P MM FST+EG VS S RKKSACIK+LYFTIWNVFFVN+LSGSVI QL+ LSSV+D+P  
Sbjct: 420 PLMMYFSTLEGCVSRSLRKKSACIKILYFTIWNVFFVNILSGSVIRQLSVLSSVRDIPAQ 479

Query: 451 LAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQ 510
           LA+ +P QVGFFMTY  TSGWA L+ EIMQP  L+ N++ K I + K +    TL FPY 
Sbjct: 480 LAKVVPAQVGFFMTYCFTSGWAGLACEIMQPVGLIWNLIAKVIVKNKEDSYE-TLRFPYH 538

Query: 511 TEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIA 570
           TE+PRLLLFG LGF  SV+APLILPFLLIYF  AYL+YKNQIINVY   YESGGQYWP+ 
Sbjct: 539 TEIPRLLLFGLLGFTNSVIAPLILPFLLIYFFFAYLIYKNQIINVYITKYESGGQYWPVF 598

Query: 571 HKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQV 630
           H T I SL+L+QIIALG FG+K S VASGFTIPLI  TLLF+EYCRQRF P F+K  A++
Sbjct: 599 HNTTIFSLILSQIIALGFFGLKLSTVASGFTIPLIFLTLLFSEYCRQRFAPIFKKYPAEI 658

Query: 631 LTQMDQQDEQGGRMEEIYQQLKFAYCQ 657
           L  MD+ DE  G+MEEI+  LK AY Q
Sbjct: 659 LIAMDRADEMTGKMEEIHNNLKAAYSQ 685

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	701
TAIR|locus:2201876	762	AT1G10090 "AT1G10090" [Arabido	0.449	0.413	0.647	1.5e-201
TAIR|locus:504956093	1041	RXW8 [Arabidopsis thaliana (ta	0.485	0.326	0.639	1.5e-200
TAIR|locus:2102117	703	HYP1 "hypothetical protein 1"	0.442	0.440	0.479	1.3e-137
TAIR|locus:2007126	711	AT1G69450 [Arabidopsis thalian	0.447	0.441	0.445	2.4e-127
TAIR|locus:2096991	712	AT3G54510 [Arabidopsis thalian	0.442	0.435	0.405	1.4e-97
TAIR|locus:2120673	771	AT4G22120 [Arabidopsis thalian	0.416	0.378	0.359	5.9e-87
TAIR|locus:2008860	771	AT1G11960 "AT1G11960" [Arabido	0.403	0.367	0.356	5.1e-82
TAIR|locus:2031735	806	AT1G32090 "AT1G32090" [Arabido	0.433	0.377	0.346	3.6e-81
TAIR|locus:2134882	772	AT4G04340 [Arabidopsis thalian	0.422	0.383	0.323	2.1e-79
TAIR|locus:2089850	756	AT3G21620 "AT3G21620" [Arabido	0.402	0.373	0.320	1.6e-76

TAIR|locus:2201876 AT1G10090 "AT1G10090" [Arabidopsis thaliana (taxid:3702)]

 Score = 1056 (376.8 bits), Expect = 1.5e-201, Sum P(2) = 1.5e-201
 Identities = 206/318 (64%), Positives = 243/318 (76%)

Query:   341 IPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIE 400
             + + Q LTQL  LS  FPFLK +  ++F+  V+TGYLPSVIL+LF Y  PP MM FST+E
Sbjct:   371 VTFVQGLTQLPTLSKNFPFLKDLLNRRFMEQVITGYLPSVILVLFFYTVPPLMMYFSTLE 430

Query:   401 GSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHLAEAIPNQVG 460
             G VS S RKKSAC+K+LYFTIWNVFFVN+LSGSVI Q T L+SV+DVP  LA+ +P Q G
Sbjct:   431 GCVSRSQRKKSACLKILYFTIWNVFFVNILSGSVIRQFTVLNSVRDVPAQLAKLVPAQAG 490

Query:   461 FFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPN-GTLSFPYQTEVPRLLLF 519
             FFMTY  TSGWA L+ EIMQP  L+ N++ K I  +KN   +  TL FPY TE+PRLLLF
Sbjct:   491 FFMTYCFTSGWAGLACEIMQPVGLIWNLIAKVI--VKNKEESYETLRFPYHTEIPRLLLF 548

Query:   520 GFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLV 579
             G LGF  SV+APLILPFLLIYF  AYL+YKNQIINVY   YESGGQYWP+ H T I SL+
Sbjct:   549 GLLGFTNSVIAPLILPFLLIYFFFAYLIYKNQIINVYITKYESGGQYWPVFHNTTIFSLI 608

Query:   580 LTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDE 639
             L+Q+IALG FG+K S VASGFTIPLI+ TLLF+EYCRQRF P FQK  A++L  MD+ DE
Sbjct:   609 LSQVIALGFFGLKLSTVASGFTIPLILLTLLFSEYCRQRFAPIFQKYPAEILIAMDRADE 668

Query:   640 QGGRMEEIYQQLKFAYCQ 657
               G+MEEI+  LK AY Q
Sbjct:   669 MTGKMEEIHNNLKVAYSQ 686

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:504956093 RXW8 [Arabidopsis thaliana (taxid:3702)]

 Score = 1086 (387.4 bits), Expect = 1.5e-200, Sum P(3) = 1.5e-200
 Identities = 220/344 (63%), Positives = 258/344 (75%)

Query:   322 LWVTEMAPEPNDVLWSNLS-IP--YRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLP 378
             LW+ ++A     V +  +  IP  + Q LTQL QLSHAFPFL+G+  K FI+ V+TGYLP
Sbjct:   647 LWIRKIATLVGAVAFMFVFLIPVTFIQGLTQLVQLSHAFPFLRGILSKNFINQVITGYLP 706

Query:   379 SVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQL 438
             SVILILF YA PP MM FS +EG +S S RKKSACIKVLYFTIWNVFFVN+LSGSVI QL
Sbjct:   707 SVILILFFYAVPPLMMYFSALEGCISRSIRKKSACIKVLYFTIWNVFFVNILSGSVIRQL 766

Query:   439 TKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKN 498
                SSV+D+P  LA A+P Q GFFMTY  TSGWASL+ EIMQP  L+ N++ K + + ++
Sbjct:   767 NVFSSVRDIPAQLARAVPTQAGFFMTYCFTSGWASLACEIMQPMALIWNLVAKVVTKNED 826

Query:   499 NPPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKK 558
                  TL FPY TE+PRLLLFG LGF  SV+APLILPFLLIYF LAYL+YKNQI+NVY  
Sbjct:   827 ESYE-TLRFPYHTEIPRLLLFGLLGFTNSVIAPLILPFLLIYFFLAYLIYKNQILNVYIT 885

Query:   559 SYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQR 618
              YESGGQYWPI H T I SL+LTQIIALG FG+K S VASGFTIPLI+ TLLF+EYCRQR
Sbjct:   886 KYESGGQYWPIFHNTTIFSLILTQIIALGFFGLKLSTVASGFTIPLILLTLLFSEYCRQR 945

Query:   619 FFPSFQKIAAQVLTQMDQQDEQGGRMEEIYQQLKFAYCQFRLIS 662
             F P F K  AQVL  MD+ DE  G+MEE++++L   Y Q  L S
Sbjct:   946 FAPIFNKNPAQVLIDMDRADEISGKMEELHKKLHNVYSQIPLHS 989

GO:0005576 "extracellular region" evidence=ISM

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016298 "lipase activity" evidence=IEA

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

TAIR|locus:2102117 HYP1 "hypothetical protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
 Identities = 149/311 (47%), Positives = 207/311 (66%)

Query:   345 QLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVS 404
             Q L  L QL   FPFLKG+   K +S V+TGYLPS+I  LFL   PP M++ S+++G +S
Sbjct:   378 QGLANLHQLETWFPFLKGILNMKIVSQVITGYLPSLIFQLFLLIVPPIMLLLSSMQGFIS 437

Query:   405 HSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHLAEAIPNQVGFFMT 464
             HS  +KSACIK+L FT+WN FF NVLSGS + ++      K +P+ LA A+P Q  FF++
Sbjct:   438 HSQIEKSACIKLLIFTVWNSFFANVLSGSALYRVNVFLEPKTIPRVLAAAVPAQASFFVS 497

Query:   465 YVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPPNGTLSFPYQTEVPRLLLFGFLGF 524
             YV+TSGW  LS EI++   LL + + K   + +++      S P+  E+PR+L FG LG 
Sbjct:   498 YVVTSGWTGLSSEILRLVPLLWSFITKLFGK-EDDKEFEVPSTPFCQEIPRILFFGLLGI 556

Query:   525 ICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQII 584
                 ++PLILPFLL+Y+ L Y++Y+NQ++NVY   YE+GG++WPI H   I SLVL  II
Sbjct:   557 TYFFLSPLILPFLLVYYCLGYIIYRNQLLNVYAAKYETGGKFWPIVHSYTIFSLVLMHII 616

Query:   585 ALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDEQGGRM 644
             A+G+FG+K+ PVAS  TIPL V T+LF+ YC++RF P+F+    Q L   D+ DE+   M
Sbjct:   617 AVGLFGLKELPVASSLTIPLPVLTVLFSIYCQRRFLPNFKSYPTQCLVNKDKADEREQNM 676

Query:   645 EEIYQQLKFAY 655
              E Y +L  AY
Sbjct:   677 SEFYSELVVAY 687

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2007126 AT1G69450 [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
 Identities = 144/323 (44%), Positives = 198/323 (61%)

Query:   345 QLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVS 404
             Q LT L  L   FPFL  +   K +S ++TGYLPS+IL   L   PPTM   S+I+G + 
Sbjct:   372 QGLTNLPALEFMFPFLSLILSMKVVSQIITGYLPSLILQTSLKVVPPTMEFLSSIQGHIC 431

Query:   405 HSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKHLAEAIPNQVGFFMT 464
             HS  +KSAC KV++FTIWNVFF  V SGS   +L+ +   K +P  LA A+P Q  FF+ 
Sbjct:   432 HSDIQKSACNKVIWFTIWNVFFATVFSGSAFYKLSVILDPKQIPLKLAVAVPAQASFFIA 491

Query:   465 YVLTSGWASLSVEIMQPF-FLLRNILKKFICRIKNN---PPNGTLSFPYQTEVPRLLLFG 520
             YV+T+GW     E+ +   F++  I + F    +N    PP       Y  + PR+L FG
Sbjct:   492 YVVTTGWTDTLTELFRVVPFMVSYIKRSFEPSDENEFVVPP-----MRYHRDTPRVLFFG 546

Query:   521 FLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVL 580
              LG     +APLILPF+L+YF+LAY++Y+NQ +NVY   +++GG +WP+ H T+I SLVL
Sbjct:   547 LLGITYFFLAPLILPFILLYFILAYIIYRNQFMNVYAPKFDTGGMFWPMIHYTMIFSLVL 606

Query:   581 TQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDEQ 640
              Q IA+G+F +KK  +A+   +PL V TLLFNE+CR+RF P F    A+VLT+ D++D  
Sbjct:   607 MQAIAIGLFALKKMELATYLLVPLPVFTLLFNEFCRKRFMPIFTDYPAEVLTKRDKEDRN 666

Query:   641 GGRMEEIYQQLKFAYCQFRLISL 663
                M E Y  L  AY    L+ L
Sbjct:   667 DPTMPEFYNNLVSAYKDPALLPL 689

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2096991 AT3G54510 [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
 Identities = 127/313 (40%), Positives = 195/313 (62%)

Query:   345 QLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVS 404
             Q + + E+L   FP    +     +S VVTGYLPS IL  F+Y  P  M+  + + GS+S
Sbjct:   372 QGIAKYEKLKKWFPPAMAIEFIPGLSSVVTGYLPSAILKGFMYIIPFAMLGLAYLGGSIS 431

Query:   405 HSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTK-LSSVKDVPKHLAEAIPNQVGFFM 463
             +S  +  AC  V YF + NVFF++++SGS++ ++ + L+  +D+P HLA A+  Q  FFM
Sbjct:   432 NSKEEIKACNMVFYFLMGNVFFLSLISGSLLDEIGEYLTHPRDIPSHLAAAVSAQAEFFM 491

Query:   464 TYVLTSGWASLSVEIMQPFFLLRNILKKFIC-RIKNNPPNGTLSFPYQTEVPRLLLFGFL 522
             TY+LT G +  S+EI+Q   +L +I++ +   R K   P    SFPY   +P + L   +
Sbjct:   492 TYILTDGLSGFSLEILQLGLILFDIIRSYTYGRGKERTPY-LFSFPYFRVIPTVSLSIMI 550

Query:   523 GFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQ 582
             G I +V+APL+LPFL+ YF L Y+VY NQ+ +VY+ +Y++ G++WP  H  I  S++L Q
Sbjct:   551 GMIYAVVAPLMLPFLVGYFCLGYIVYFNQMEDVYETTYDTCGRFWPFIHHYIFVSIILMQ 610

Query:   583 IIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDEQGG 642
             I  +G+FG+K  P A+  T+PLI+ T+ +NEYC+ RF PSF+    Q   ++D++DE+ G
Sbjct:   611 ITMVGLFGLKSKPSAAIATVPLILITIAYNEYCKIRFLPSFKHFPIQTAVEIDEEDEKNG 670

Query:   643 RMEEIYQQLKFAY 655
              ME  Y     AY
Sbjct:   671 EMETHYVDAATAY 683

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2120673 AT4G22120 [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 5.9e-87, Sum P(2) = 5.9e-87
 Identities = 109/303 (35%), Positives = 176/303 (58%)

Query:   341 IPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIE 400
             I + Q L  +E +  A PFLK +   KF+  V+ G+LP + L LFL   P  +M+ S  E
Sbjct:   393 IAFVQSLATIEGIVKAAPFLKFIVDDKFMKSVIQGFLPGIALKLFLAFLPSILMIMSKFE 452

Query:   401 GSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKL--SSVKDVPKHLAEAIPNQ 458
             G  S S  ++ A  +   F + NVF  +V++G+   QL      S   +PK +  AIP +
Sbjct:   453 GFTSISSLERRAAFRYYIFNLVNVFLASVIAGAAFEQLNSFLNQSANQIPKTIGVAIPMK 512

Query:   459 VGFFMTYVLTSGWASLSVEIM--QPF--FLLRN--ILKKFICRIKNNPPNGTLSFPYQTE 512
               FF+TY++  GWA ++ EI+  +P   F L+N  ++K    R +   P G++ F   T 
Sbjct:   513 ATFFITYIMVDGWAGVAGEILMLKPLIMFHLKNAFLVKTDKDREEAMDP-GSIGF--NTG 569

Query:   513 VPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHK 572
              PR+ L+  LG + + + P++LPF+L++F LAY+VY++QIINVY + YES   +WP  H 
Sbjct:   570 EPRIQLYFLLGLVYAPVTPMLLPFILVFFALAYIVYRHQIINVYNQEYESAAAFWPDVHG 629

Query:   573 TIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLT 632
              +IA+LV++Q++ +G+ G K + +A+ F I L V T+ F+ +C+ R+ P+F +   Q   
Sbjct:   630 RVIAALVISQLLLMGLLGTKHAALAAPFLIALPVLTIGFHHFCKGRYEPAFIRYPLQEAM 689

Query:   633 QMD 635
               D
Sbjct:   690 MKD 692

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2008860 AT1G11960 "AT1G11960" [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 5.1e-82, Sum P(2) = 5.1e-82
 Identities = 104/292 (35%), Positives = 173/292 (59%)

Query:   339 LSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFST 398
             + I + Q L  +E +    PFLK + +      V+ G+LP ++L LFL   P  +MV S 
Sbjct:   390 IPIAFVQSLASIEGIEKNAPFLKSIIENDLFKSVIQGFLPGIVLKLFLIFLPSILMVMSK 449

Query:   399 IEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKL--SSVKDVPKHLAEAIP 456
              EG VS S  ++ A  +   F + NVF  +V++GS   QL      S K++PK +  AIP
Sbjct:   450 FEGFVSLSSLERRAAFRYYIFNLINVFLGSVITGSAFEQLDSFLKQSAKEIPKTVGVAIP 509

Query:   457 NQVGFFMTYVLTSGWASLSVEIMQ--P--FFLLRNILKKFICRIKNNPPN-GTLSFPYQT 511
              +  FF+TY++  GWA ++ EI++  P  FF ++N L     + +    N G +++ + T
Sbjct:   510 IKATFFITYIMVDGWAGIAGEILRLKPLIFFHIKNSLLVKTEKDREEAMNPGQINY-HAT 568

Query:   512 EVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAH 571
             E PR+ L+  LG + + + P++LPF++I+F LAYLV+++QIINVY + YES  ++WP  H
Sbjct:   569 E-PRIQLYFLLGLVYAPVTPVLLPFIIIFFALAYLVFRHQIINVYNQEYESAARFWPDVH 627

Query:   572 KTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSF 623
               II++L++ QI+ +G+   K +  ++ F + L + T  F+ YC+ R+ P+F
Sbjct:   628 GRIISALIIAQILLMGLLSTKGAAQSTPFLLFLPIITFFFHRYCKGRYEPAF 679

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031735 AT1G32090 "AT1G32090" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 3.6e-81, Sum P(2) = 3.6e-81
 Identities = 109/315 (34%), Positives = 186/315 (59%)

Query:   334 VLWSNLSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTM 393
             V +  + I + Q L  LE L    PFL+ + +  FI   + G+LP + L +FL+  P  +
Sbjct:   385 VFFYMIPIAFVQSLANLEGLDRVAPFLRPVTRLDFIKSFLQGFLPGLALKIFLWILPTVL 444

Query:   394 MVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKL--SSVKDVPKHL 451
             ++ S IEG ++ S  ++ A  K  YF + NVF  ++++G+   QL      S   +P+ +
Sbjct:   445 LIMSKIEGYIALSTLERRAAAKYYYFMLVNVFLGSIIAGTAFEQLHSFLHQSPSQIPRTI 504

Query:   452 AEAIPNQVGFFMTYVLTSGWASLSVEIMQ--PF--FLLRN--ILKKFICRIKNNPPNGTL 505
               +IP +  FF+TY++  GWA ++ EI++  P   F L+N  I+K    R++   P G +
Sbjct:   505 GVSIPMKATFFITYIMVDGWAGIAGEILRLKPLVIFHLKNMFIVKTEEDRVRAMDP-GFV 563

Query:   506 SFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQ 565
              F  +T +P L L+  LG + + + P++LPF+LI+F  AYLVY++QIINVY + YES G 
Sbjct:   564 DFK-ET-IPSLQLYFLLGIVYTAVTPILLPFILIFFAFAYLVYRHQIINVYNQQYESCGA 621

Query:   566 YWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQK 625
             +WP  H  IIASL+++Q++ +G+   KK+  ++   I L + TL F++YC+ RF P+F++
Sbjct:   622 FWPHVHGRIIASLLISQLLLMGLLASKKAADSTPLLIILPILTLSFHKYCKHRFEPAFRQ 681

Query:   626 IAAQVLTQMDQQDEQ 640
                +     D+ +++
Sbjct:   682 YPLEEAMAKDKLEKE 696

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2134882 AT4G04340 [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 2.1e-79, Sum P(2) = 2.1e-79
 Identities = 98/303 (32%), Positives = 169/303 (55%)

Query:   339 LSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFST 398
             + I + Q L  +E +    PFLK + +K FI  ++ G L  + L LFL   P  +M  S 
Sbjct:   392 IPIAFVQSLATIEGIEKVAPFLKVIIEKDFIKSLIQGLLAGIALKLFLIFLPAILMTMSK 451

Query:   399 IEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKL--SSVKDVPKHLAEAIP 456
              EG  S S  ++ +  +   F + NVF  +V++G+   QL      S   +PK +  AIP
Sbjct:   452 FEGFTSVSFLERRSASRYYIFNLVNVFLGSVIAGAAFEQLNSFLNQSPNQIPKTIGMAIP 511

Query:   457 NQVGFFMTYVLTSGWASLSVEIM--QPFFLLRNILKKFICRIKNNPPNGTL--SFPYQTE 512
              +  FF+TY++  GWA ++ EI+  +P  ++ ++   F+ + + +        S  + T 
Sbjct:   512 MKATFFITYIMVDGWAGVAGEILMLKPL-IIYHLKNAFLVKTEKDREEAMNPGSIGFNTG 570

Query:   513 VPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHK 572
              P++ L+  LG + + + P++LPF+L++F LAY+VY++QIINVY + YES   +WP  H 
Sbjct:   571 EPQIQLYFLLGLVYAPVTPMLLPFILVFFALAYVVYRHQIINVYNQEYESAAAFWPDVHG 630

Query:   573 TIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLT 632
              +I +L+++Q++ +G+ G K +  A+ F I L V T+ F+ +C+ RF P+F +   Q   
Sbjct:   631 RVITALIISQLLLMGLLGTKHAASAAPFLIALPVITIGFHRFCKGRFEPAFVRYPLQEAM 690

Query:   633 QMD 635
               D
Sbjct:   691 MKD 693

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2089850 AT3G21620 "AT3G21620" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.6e-76, Sum P(2) = 1.6e-76
 Identities = 94/293 (32%), Positives = 172/293 (58%)

Query:   339 LSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFST 398
             + I + Q L  +E +  A PFLK + + K +   + G+LP + L +FL   P  +M+ S 
Sbjct:   388 IPIAFVQTLANIEGIEKAVPFLKPLIEVKTVKSFIQGFLPGIALKIFLIVLPSILMLMSK 447

Query:   399 IEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKL--SSVKDVPKHLAEAIP 456
              EG +S S  ++    +   F   NVF  ++++G+ + QL      S  ++PK +  +IP
Sbjct:   448 FEGFISKSSLERRCASRYYMFQFINVFLCSIIAGTALQQLDSFLNQSATEIPKTIGVSIP 507

Query:   457 NQVGFFMTYVLTSGWASLSVEIMQ--PFFL--LRN--ILKKFICRIKNNPPNGTLSFPYQ 510
              +  FF+TY++  GWA ++ EI++  P  +  L+N  ++K    R +   P GT+ F   
Sbjct:   508 MKATFFITYIMVDGWAGVAGEILRLKPLIIYHLKNFFLVKTEKDREEAMDP-GTIGF--N 564

Query:   511 TEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIA 570
             T  P++ L+  LG + + ++P++LPF+L++F LAY+VY++QIINVY + YES   +WP  
Sbjct:   565 TGEPQIQLYFILGLVYAAVSPILLPFILVFFALAYVVYRHQIINVYNQEYESAAAFWPDV 624

Query:   571 HKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSF 623
             H+ ++ +L+++Q++ +G+   KK+  ++     L V T+ F+++C+ R+ P F
Sbjct:   625 HRRVVIALIVSQLLLMGLLSTKKAARSTPLLFILPVLTIGFHKFCQGRYQPIF 677

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	701
pfam02714	325	pfam02714, DUF221, Domain of unknown function DUF2	8e-84
COG5594	827	COG5594, COG5594, Uncharacterized integral membran	1e-57
pfam13967	151	pfam13967, RSN1_TM, Late exocytosis, associated wi	4e-38

>gnl|CDD|190398 pfam02714, DUF221, Domain of unknown function DUF221

 Score =  267 bits (685), Expect = 8e-84
 Identities = 112/325 (34%), Positives = 165/325 (50%), Gaps = 33/325 (10%)

Query: 298 AFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYR------------- 344
           AFV FK++ AA +AA+ L   NP+ W T +APEP D++W NLS+                
Sbjct: 1   AFVTFKSQAAAQMAAQALQHHNPLKWPTYLAPEPRDIIWENLSLSRWERWLRRLIVNLLL 60

Query: 345 --------------QLLTQLEQLSHAFPFLKGM-FKKKFISHVVTGYLPSVILILFLYAA 389
                          LL+ LE L+  +PFLK +      +  +VTG LP+++L L +   
Sbjct: 61  FLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILDLPPVLLGLVTGLLPTLLLSLLMALL 120

Query: 390 PPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTK-LSSVKDVP 448
           P  +   S ++G  S S  + S   K   F + NVF V  L+ +    +T+ + +   +P
Sbjct: 121 PIILRFLSKLQGHPSRSDVELSVQSKYFAFLVVNVFLVVTLASTASSLITEIIDNPTSIP 180

Query: 449 KHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPF-FLLRNILKKFIC---RIKNNPPNGT 504
             LA  +P    FF++Y+L  G +  + E++Q    +L  I +KF+    R K       
Sbjct: 181 TLLATNLPKASNFFISYILLQGLSGAAGELLQLGPLILYYIRRKFLDKTPRDKWERYTTP 240

Query: 505 LSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGG 564
            SF Y T  P  LL   +G I SV+APLILPF L+YF L Y VYK Q++ VY   YESGG
Sbjct: 241 PSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYVYVTKYESGG 300

Query: 565 QYWPIAHKTIIASLVLTQIIALGIF 589
            +WP A   ++  L L Q+  +G+F
Sbjct: 301 LFWPRALNRLLVGLYLFQLCLIGLF 325

This family consists of hypothetical transmembrane proteins none of which have any function, the aligned region is at 538 residues at maximum length. Length = 325

>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein [Function unknown]

 Score =  209 bits (533), Expect = 1e-57
 Identities = 165/717 (23%), Positives = 282/717 (39%), Gaps = 104/717 (14%)

Query: 3   LSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSP 62
            SA +T +     I ++  +L+ +LRK+       + PR    +        L    PS 
Sbjct: 21  TSAVITQLVFAGLIFLVFLILFLILRKR---WKRLYAPR----TNFDGQNECLPEPNPSS 73

Query: 63  --SWVVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYY-GKEM 119
              W+    +  ++ +L   G+D   F+R +   I++  I ++I + ++LPVNY+  K  
Sbjct: 74  YWGWLEPLVKIPDEFLLQYAGLDGYFFLRFLKMLIKLLFILSLILIPILLPVNYHFQKAT 133

Query: 120 IHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFEHKSISRTRLAYIT- 178
             +  S   L+  +I+NV  S+  L+ H F  +        +++ E +     R AY+  
Sbjct: 134 NGNSDSESGLDKLSISNVSPSN-RLYAHVFLSWFFFGYVLFIIFRELRFYVVLRQAYLRS 192

Query: 179 --------GSPPNPSHFTVLVRAVPWSAEQS-----YSESVKEFFMKYYAPSYLSHHMVH 225
                       N S  TVL+  +P             + +K   +           +  
Sbjct: 193 PLYQQSLLTLQNNLSSRTVLISGLPSELRSDEELKELFDKLKVGEIDSDVLCRDLGTLQE 252

Query: 226 ----RSSRVQRL---MNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNS----------- 267
               R   +++L   +N+          +   +KS    L                    
Sbjct: 253 LYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGK--LTPSRKKEFEILPEYVPDKKR 310

Query: 268 ---------FEILSNEPDNVR------GNIGLDISNLATEKENAV----AFVCFKTRYAA 308
                      I   + D +         +  +I N              F+ FK++ +A
Sbjct: 311 PKHRIKKLNKGIFGKKVDAIDYYSAKLTKLDAEIENARKSLYENTPTKSGFITFKSQASA 370

Query: 309 VVAAEILHSENP-MLWVTEMAPEPNDVLWSNLSI-------------------------- 341
            +AA+             E+AP PND++W NL +                          
Sbjct: 371 QIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRKERLFKRISANILFILLIILWAFP 430

Query: 342 -PYRQLLTQLEQLSHAFPFLKGMFKK-KFISHVVTGYLPSVILILFLYAAPPTMMVFSTI 399
             +   ++ L  LS  +PFLK + K   F++ ++TG LP+V L L +   P  +   S +
Sbjct: 431 VAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWLSYM 490

Query: 400 EGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGS-VIGQLTKLSSVKDVPKHLAEAIPNQ 458
           +G VS+S  +     K   F   N+F V  L+ S      + L     +   LA  +P  
Sbjct: 491 QGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEPTSIMTLLANNLPKA 550

Query: 459 VGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICRIKNNPP-------NGTLSFPYQT 511
             FF++Y++  G +     ++Q   LL   L   + + K++ P           SF + T
Sbjct: 551 SNFFISYIILQGLSGFPGTLLQIVPLL---LSLVLGKFKDSTPRQKWNRLETPPSFQFGT 607

Query: 512 EVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAH 571
            +P+ +L   +    S+++PLIL F  +YF+L YL YK  +I V   S ESGG YWP A 
Sbjct: 608 VLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYNLIYVSNHSPESGGGYWPRAL 667

Query: 572 KTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAA 628
             II  L L Q+  LG+F + K    S    PLIV T++F+ Y ++ F P  + I  
Sbjct: 668 FQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKMFDPLSKYIKL 724

Length = 827

>gnl|CDD|222479 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport

 Score =  138 bits (350), Expect = 4e-38
 Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 10/161 (6%)

Query: 5   AFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNYPPSLLRYLPSPSW 64
           AFLTS+ IN  +A++ FLL+S+LR +  N  VY  PR  LA   +              W
Sbjct: 1   AFLTSLVINLVLALVFFLLFSILRPK--NKRVYA-PRTYLAGPEEE-RTPPPPPRGLFGW 56

Query: 65  VVKAWETTEDDILALGGMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDI 124
           +    + ++++IL   G+DA VF+R +   I+IF +  VI   ++LPVN  G        
Sbjct: 57  IPPLLKISDEEILQHAGLDAYVFLRFLKMGIKIFLVGCVIGWPILLPVNATG------GN 110

Query: 125 SSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLYFE 165
               L+  +I+NV E S  LW H    Y+ T   C LLY E
Sbjct: 111 GETGLDKLSISNVVEGSNRLWAHVVVAYIFTGFVCYLLYRE 151

This family represents the first three transmembrane regions of 11-TM proteins involved in vesicle transport. In S. cerevisiae these proteins are members of the yeast facilitator superfamily and are integral membrane proteins localised to the cell periphery, in particular to the bud-neck region. The distribution is consistent with a role in late exocytosis which is in agreement with the proteins' ability to substitute for the function of Sro7p, required for the sorting of the protein Enap1 into Golgi-derived vesicles destined for the cell surface. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	701
KOG1134	728	consensus Uncharacterized conserved protein [Gener	100.0
COG5594	827	Uncharacterized integral membrane protein [Functio	100.0
PF02714	325	DUF221: Domain of unknown function DUF221; InterPr	100.0
PF13967	157	RSN1_TM: Late exocytosis, associated with Golgi tr	100.0
PF04547	452	Anoctamin: Calcium-activated chloride channel; Int	98.38
PF14703	85	DUF4463: Domain of unknown function (DUF4463)	96.48
KOG2513	647	consensus Protein required for meiotic chromosome	96.25
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	95.58
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	93.92
PLN03120	260	nucleic acid binding protein; Provisional	93.75
PLN03121	243	nucleic acid binding protein; Provisional	92.95
KOG0122	270	consensus Translation initiation factor 3, subunit	92.88
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	92.18
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	92.06
KOG0149	247	consensus Predicted RNA-binding protein SEB4 (RRM	91.6
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	90.86
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	90.8
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	90.46
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	89.59
KOG0125	376	consensus Ataxin 2-binding protein (RRM superfamil	87.29
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	86.75
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	86.72
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	86.16
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	84.19
PF12621	95	DUF3779: Phosphate metabolism protein ; InterPro:	82.49
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	81.97
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	81.62

>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]

Probab=100.00  E-value=7.4e-112  Score=969.65  Aligned_cols=657  Identities=36%  Similarity=0.584  Sum_probs=584.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHcCCCCCcceecCcccccccccCCC-CCCccCCCCC-cchhhhhhcCChHHHHHhc
Q 039780            3 LSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASERKNY-PPSLLRYLPS-PSWVVKAWETTEDDILALG   80 (701)
Q Consensus         3 ~~~~~tsl~in~~i~~~~~llF~~LR~~~~~~~vY~pr~~~~~~~~~~~-p~~~~~~~~~-f~Wi~~~~~~~e~~i~~~~   80 (701)
                      .+++..+-.+|...+..++.+|.+++.+++|.++|.|++.+.+..+.+. ......+... ++|+.+++|++|+|++++|
T Consensus         4 ~~~~~~~s~~~~~~~~~~~~~~~~l~l~~~~~~vy~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wl~~~~k~~~~ei~~~~   83 (728)
T KOG1134|consen    4 FESIGISSTLNLNSAFAFLFLFLFLRLQPRNFRVYLPIWSLKGLRSSPIESKVEPVPSSVNFGWLPALLKIPDEEILEHA   83 (728)
T ss_pred             cccccccccccchhhHHHHHHHHHHHhhhcceEEEEeeeeeccccCcCccccCCCCCCcccccchHHHhcCCHHHHHHHh
Confidence            4445555667777777888888889889999999999998776542111 0000111223 9999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhhheeeeeeeCCcccccCCCCCcccccccccccCCCcchHHHHHHHHHHHHHHHH
Q 039780           81 GMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACG  160 (701)
Q Consensus        81 GlDa~~flrfl~~~i~if~~~~i~~~~ILlPvn~~g~~~~~~~~~~~~l~~lTisNv~~~s~~lw~h~i~~~~~~~~~~~  160 (701)
                      |+||++||||+++++++|+++++++++||+|||+++++..+.  ..+++|++|++|++.+|+++|+|++++|++++++||
T Consensus        84 GlDa~~~L~~~~~~~~lf~~~~~l~~~illPVn~~~~~~~~~--~~~s~~~ls~snv~~~s~~lw~Hv~~~y~~~~~~~~  161 (728)
T KOG1134|consen   84 GLDAYVFLRFLKLGIKLFAVLSLLSVPILLPVNWTNGNLELG--NEDSLDKLSISNVQPGSSLLWAHVFFTYLFTFFTLF  161 (728)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhheEEeeEEEecCccccc--ccchhhhhhheeccCCCCCEEEEeehhHHHHHHHHH
Confidence            999999999999999999999999999999999999876543  222799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHH
Q 039780          161 LLYFEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKI  240 (701)
Q Consensus       161 ~l~~e~~~~~~~R~~~l~~~~~~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~  240 (701)
                      ++++||+++.++|++|++++.+++++.|++++++|.....+..+..+++|+..++.++.++++++|..++.++.+++++.
T Consensus       162 ~l~~e~~~~~~~R~~~l~~~~~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~k~  241 (728)
T KOG1134|consen  162 ILYREYKHVASIRQAYLASPKYRPDQSSVLVRNVPPPDGVSVSVIVRHFFSLNHPVKVRSHQVVYNESKLSKLLSKLKKL  241 (728)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCcCccccchhhhcccCCCCCchhhHHhhhhhccCCceeehhHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999755555677888999999999999999999999999999999988


Q ss_pred             -HHHh--cc--cccCCCCCCCCC----CCccCc-c--hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHH
Q 039780          241 -CRVF--KG--VSAEQKSKPCLL----PCFCGA-P--NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAA  308 (701)
Q Consensus       241 -~~~l--k~--~~~~~~~rp~~~----~~~~~~-~--~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A  308 (701)
                       .+++  ++  .....++||...    |++|++ |  +||++|+   ++++++|.++|+....+++.+.|||||+|+.+|
T Consensus       242 ~~~~l~~~~~~~~~~~~~rP~~k~~~~~l~gkkvdai~yy~~kl---~~l~~~i~~~~~~~~~~~~~~~aFVtf~sr~~A  318 (728)
T KOG1134|consen  242 RENKLYKEHKRLKSNPKKRPKRKLGFCGLFGKKVDAIDYYSEKL---QELSEDIEELRESLYEEKPLPAAFVTFKSRYGA  318 (728)
T ss_pred             hHHHHHHhhhhhccccccCCcceeeeeeeecceecHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCceEEEEEEeeHHH
Confidence             4444  11  111122666532    455655 4  8999999   999999988887776668899999999999999


Q ss_pred             HHHHHHhccCCCCceEEeeCCCCCCeeecccCCchhhh---------------------------hccHHhhHHhccccc
Q 039780          309 VVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL---------------------------LTQLEQLSHAFPFLK  361 (701)
Q Consensus       309 ~~a~q~~~~~~p~~~~v~~AP~P~DIiW~Nl~~~~~~r---------------------------ls~l~~L~~~~p~l~  361 (701)
                      +.|+|..++.+|.+|.++.||||+||.|+|+.+++++|                           ++|+++|.+.+||++
T Consensus       319 ~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~l~nl~~l~~~~Pflk  398 (728)
T KOG1134|consen  319 AVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQALTNLEGLSKVFPFLK  398 (728)
T ss_pred             HHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhh
Confidence            99999999999999999999999999999999998886                           679999999999999


Q ss_pred             ccchhhhHHHHHHhchHHHHHHHHHHHhHHHHHHHHHhcCCcchhhhHhhhcchhhhhhhhHHHHHHHhhhhHHHHhhhc
Q 039780          362 GMFKKKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKL  441 (701)
Q Consensus       362 ~~~~~~~~~~ii~g~lP~l~l~~l~~llP~i~~~ls~~eg~~t~S~~e~s~~~k~f~F~~vnvflv~~l~~s~~~~l~~~  441 (701)
                      .+.+.++++++++|+||++++.++++++|.++++++++||+.|+|+.|++++.|+|+|+++|+|++++++|+++.++..+
T Consensus       399 ~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~sa~~~~~~~  478 (728)
T KOG1134|consen  399 PILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGSALRQLLSI  478 (728)
T ss_pred             hhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHH
Confidence            99988999999999999999999999999999999999999999999999999999999999999999999999988554


Q ss_pred             -cCCCcHHHHHHHhcCchhHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHhhhcc-CCCC--CCCCC-CCCCCccchhHH
Q 039780          442 -SSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFICR-IKNN--PPNGT-LSFPYQTEVPRL  516 (701)
Q Consensus       442 -~~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~~~Ll~~~~li~~~~~~~~~~-~~~~--~~~~~-~~f~~g~~y~~~  516 (701)
                       .+|.+++..+|.++|++++||++|++++|++|.++||+|+++|+++.+++.+.+ ++++  +.+++ +.+++|..||+.
T Consensus       479 l~~p~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~~~p~~~~~~g~~yP~~  558 (728)
T KOG1134|consen  479 LSTPRLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPRDREERYEPLSSFYFGTIYPRI  558 (728)
T ss_pred             hcCHhHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchhhhhhhcCCccccchhhhccHH
Confidence             468999999999999999999999999999999999999999999988887764 4443  34555 888999999999


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheEEeccCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 039780          517 LLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPV  596 (701)
Q Consensus       517 l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~~~qi~~~g~f~lk~~~~  596 (701)
                      +++++||++||++||+|+|||++||+++|+|||||++|||.++|||||++||.+++++++|++++|+||+|+|++|+.+.
T Consensus       559 ~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~~wp~ih~~ii~~l~l~ql~l~gl~~~k~~~~  638 (728)
T KOG1134|consen  559 LLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGRFWPDIHRRIIFGLILFQLILFGLFSLKKGAV  638 (728)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecccccccccchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceehhHHHHHHHHHHHHHHHhhcCchhhhhhHHHHhhhchhhhhc-CChHHHhHhhhhcccCCccCCcc
Q 039780          597 ASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQMDQQDEQG-GRMEEIYQQLKFAYCQFRLISLD  664 (701)
Q Consensus       597 ~~~~~~~l~i~ti~f~~~~~~~~~~~~~~~pl~~~~~~d~~~~~~-~~~~~~~~~~~~~y~~p~l~~~~  664 (701)
                      .+.+++|++++|++||.+|+.+|.|.+.++|++++...|..|+.. ++++...+.+.++|.+|++.+.+
T Consensus       639 ~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  707 (728)
T KOG1134|consen  639 ASVLLFPLIVLTILFHIYCKGRFLPLFIAYPIEEAEVDDTLDEEREPNMENLYNYLKSAYVLPVFLSGS  707 (728)
T ss_pred             cchHHHHHHHHHHHHHHHHhhhccccccccchhhhhhccCCccccCCChhhccccccccccCccccccc
Confidence            999999999999999999999999999999999999988888744 44667788899999999997654

>COG5594 Uncharacterized integral membrane protein [Function unknown]

Probab=100.00  E-value=8.1e-112  Score=935.11  Aligned_cols=613  Identities=27%  Similarity=0.394  Sum_probs=547.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHcCCCCCcceecCccccccccc-CCCCCCccCCCCCcchhhhhhcCChHHHHHhc
Q 039780            2 ELSAFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALASER-KNYPPSLLRYLPSPSWVVKAWETTEDDILALG   80 (701)
Q Consensus         2 ~~~~~~tsl~in~~i~~~~~llF~~LR~~~~~~~vY~pr~~~~~~~~-~~~p~~~~~~~~~f~Wi~~~~~~~e~~i~~~~   80 (701)
                      +.+++.|++.+++.++++++++|++||+|  ++++|+||+..+++++ .+.|.    +.+.|||+.++++++|+.+++++
T Consensus        20 s~~~~~t~l~f~~~~~~~~l~~f~iLR~r--~k~lY~pr~~~~~~~~~~P~~~----~ss~~gWl~~L~~i~d~~~l~~a   93 (827)
T COG5594          20 STSAVITQLVFAGLIFLVFLILFLILRKR--WKRLYAPRTNFDGQNECLPEPN----PSSYWGWLEPLVKIPDEFLLQYA   93 (827)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHhcCcceeecCCCcccCCCC----ccchHHHHHHHHhCCHHHHHHHc
Confidence            47899999999999999999999999987  6799999999888762 22232    23569999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhhheeeeeeeCCcccccC-CCCCcccccccccccCCCcchHHHHHHHHHHHHHHH
Q 039780           81 GMDALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHD-ISSETLEIFTIANVKESSEWLWTHCFALYVITCSAC  159 (701)
Q Consensus        81 GlDa~~flrfl~~~i~if~~~~i~~~~ILlPvn~~g~~~~~~~-~~~~~l~~lTisNv~~~s~~lw~h~i~~~~~~~~~~  159 (701)
                      |+|||+||||+|||+++++++|+++++||+|||++.++..+.+ ...++++++|++|++. ++++|+|++.+|++.++++
T Consensus        94 GlD~y~fLrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~gn~~s~s~l~~Ls~~Nv~~-~n~~~aHvf~~~~f~~~vl  172 (827)
T COG5594          94 GLDGYFFLRFLKMLIKLLFILSLILIPILLPVNYHFQKATNGNSDSESGLDKLSISNVSP-SNRLYAHVFLSWFFFGYVL  172 (827)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHhHEeeeeeecccccccCCccchhhhhHhhhhcccC-CCceeeeeehhHHHHHHHH
Confidence            9999999999999999999999999999999998875432221 2457899999999987 7899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCC---------CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhH
Q 039780          160 GLLYFEHKSISRTRLAYITGSPP---------NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRV  230 (701)
Q Consensus       160 ~~l~~e~~~~~~~R~~~l~~~~~---------~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L  230 (701)
                      |.+++|++.+.++||++++++.+         +.++|||+++++|++.++  .+.+.++|++...+++.+..+|||.+.+
T Consensus       173 fii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~--~e~L~~~~~kl~~~~i~~~~l~~~~~~l  250 (827)
T COG5594         173 FIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRS--DEELKELFDKLKVGEIDSDVLCRDLGTL  250 (827)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcC--chhHHHHHhhcCeeeeccchhhhhhHHH
Confidence            99999999999999999998642         347899999999998776  4669999999988888888999999999


Q ss_pred             HHHHHHHHHHHHHhc------------c---------c----c-----------cCCCCCCCCC------CCccCc-c--
Q 039780          231 QRLMNDAEKICRVFK------------G---------V----S-----------AEQKSKPCLL------PCFCGA-P--  265 (701)
Q Consensus       231 ~~L~~~~e~~~~~lk------------~---------~----~-----------~~~~~rp~~~------~~~~~~-~--  265 (701)
                      +++.++|.+..+|++            .         .    .           .+.++||+++      |.+|++ |  
T Consensus       251 ~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkVdaI  330 (827)
T COG5594         251 QELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKVDAI  330 (827)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhccceecHH
Confidence            999999987766651            1         0    0           0123466654      344555 4  


Q ss_pred             hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCCCceE-EeeCCCCCCeeecccCCchh
Q 039780          266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWV-TEMAPEPNDVLWSNLSIPYR  344 (701)
Q Consensus       266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p~~~~-v~~AP~P~DIiW~Nl~~~~~  344 (701)
                      +|+++++   ++++++|+..|+......++++|||||+|+..||+|+|.+..+++.... ++.||+|+||+|+|+..+++
T Consensus       331 ~y~s~~l---~~l~~~i~~~r~~~~~~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~Nl~ls~~  407 (827)
T COG5594         331 DYYSAKL---TKLDAEIENARKSLYENTPTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRK  407 (827)
T ss_pred             HHHHHHH---HHHHHHHHHHHhCccccCccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccccchHHHH
Confidence            8999999   8899999888876655667889999999999999999999899987766 99999999999999999999


Q ss_pred             hh---------------------------hccHHhhHHhcccccccch-hhhHHHHHHhchHHHHHHHHHHHhHHHHHHH
Q 039780          345 QL---------------------------LTQLEQLSHAFPFLKGMFK-KKFISHVVTGYLPSVILILFLYAAPPTMMVF  396 (701)
Q Consensus       345 ~r---------------------------ls~l~~L~~~~p~l~~~~~-~~~~~~ii~g~lP~l~l~~l~~llP~i~~~l  396 (701)
                      +|                           ++|+++|++.|||++.+.+ .|+++++++|+||++++.+++.++|++++++
T Consensus       408 ~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~l~~ivP~fir~L  487 (827)
T COG5594         408 ERLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWL  487 (827)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHhHHHHHHH
Confidence            88                           6799999999999999876 5799999999999999999999999999999


Q ss_pred             HHhcCCcchhhhHhhhcchhhhhhhhHHHHHHHhhhhHHHHh-hhccCCCcHHHHHHHhcCchhHHHHHHHHHHHhhhhh
Q 039780          397 STIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQL-TKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLS  475 (701)
Q Consensus       397 s~~eg~~t~S~~e~s~~~k~f~F~~vnvflv~~l~~s~~~~l-~~~~~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~  475 (701)
                      +.+||..|+|+.|+.++.|||.|+++|+|+|++++|++.+.+ +...+|.+++.+||+++|++|+||++||++||+++.+
T Consensus       488 s~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~~s~~~llA~~lpk~SnFfi~~iilqgl~~~~  567 (827)
T COG5594         488 SYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEPTSIMTLLANNLPKASNFFISYIILQGLSGFP  567 (827)
T ss_pred             HHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcChHhHHHHHHhccHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999999999999999999999877666 5567999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHhh-hccCCCC---CCCCCCCCCCccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 039780          476 VEIMQPFFLLRNILKKF-ICRIKNN---PPNGTLSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQ  551 (701)
Q Consensus       476 ~~Ll~~~~li~~~~~~~-~~~~~~~---~~~~~~~f~~g~~y~~~l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~  551 (701)
                      ++|+|+++|+.+++..+ ..+|+|+   ++..++.|+||+.||+.+++++|+++||+|+|+|+.||++||++.|++|||+
T Consensus       568 ~~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylaykY~  647 (827)
T COG5594         568 GTLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYN  647 (827)
T ss_pred             hHHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998766554 4566665   5778999999999999999999999999999999999999999999999999


Q ss_pred             heEEeccCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHhccccccceehhHHHHHHHHHHHHHHHhhcCchhhhh
Q 039780          552 IINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKI  626 (701)
Q Consensus       552 llyvy~~~~esgG~~~~~~~~~~~~~l~~~qi~~~g~f~lk~~~~~~~~~~~l~i~ti~f~~~~~~~~~~~~~~~  626 (701)
                      ++||++.++||||++||+|++|+++|+++||+||+|+|++.++|+.+.+++|++.+|++||.+|++.|.|+.++.
T Consensus       648 l~Yv~~~~~es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~~ls~~~~p~~~~Tvi~~~~~~~~f~pl~~~i  722 (827)
T COG5594         648 LIYVSNHSPESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKMFDPLSKYI  722 (827)
T ss_pred             hhhccCCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcceeEeehHHHHHHHHHHHHHHHHhhcccccce
Confidence            999999999999999999999999999999999999999999999999999999999999999999999776443

>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length

Probab=100.00  E-value=5.7e-59  Score=499.63  Aligned_cols=292  Identities=32%  Similarity=0.642  Sum_probs=273.4

Q ss_pred             EEEEeCCHHHHHHHHHHhccCCCCceEEeeCCCCCCeeecccCCchhhh---------------------------hccH
Q 039780          298 AFVCFKTRYAAVVAAEILHSENPMLWVTEMAPEPNDVLWSNLSIPYRQL---------------------------LTQL  350 (701)
Q Consensus       298 aFVtF~s~~~A~~a~q~~~~~~p~~~~v~~AP~P~DIiW~Nl~~~~~~r---------------------------ls~l  350 (701)
                      |||||+++++|+.|+|..++++|.+|.+++||||+||+|+||+.+..+|                           ++|+
T Consensus         1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l   80 (325)
T PF02714_consen    1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL   80 (325)
T ss_pred             CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            7999999999999999999999999999999999999999999998776                           4567


Q ss_pred             HhhHHhcccccccch-hhhHHHHHHhchHHHHHHHHHHHhHHHHHHHHHhcCCcchhhhHhhhcchhhhhhhhHHHHHHH
Q 039780          351 EQLSHAFPFLKGMFK-KKFISHVVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNV  429 (701)
Q Consensus       351 ~~L~~~~p~l~~~~~-~~~~~~ii~g~lP~l~l~~l~~llP~i~~~ls~~eg~~t~S~~e~s~~~k~f~F~~vnvflv~~  429 (701)
                      +++.+.+|+++++.+ ++...++++|++|+++++++|.++|.++++++++|||.|+|+.|+++++|+|+|+++|++++++
T Consensus        81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~  160 (325)
T PF02714_consen   81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS  160 (325)
T ss_pred             cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777788889988854 4677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhhh-ccCCCcHHHHHHHhcCchhHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHhhhc-cCCCCC--C-CCC
Q 039780          430 LSGSVIGQLTK-LSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFIC-RIKNNP--P-NGT  504 (701)
Q Consensus       430 l~~s~~~~l~~-~~~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~~~Ll~~~~li~~~~~~~~~-~~~~~~--~-~~~  504 (701)
                      +++++++.++. +.+|+++.+.+|.++|++++||++|++++++.+.+++|+|++++++..++++.. +++|+.  . .++
T Consensus       161 l~~~~~~~~~~~~~~~~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~~  240 (325)
T PF02714_consen  161 LAGTILSALKNIINNPGSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTEP  240 (325)
T ss_pred             hhHHHHHHHHHHHhCcchHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence            99999988844 558999999999999999999999999999999999999999999888887765 566652  3 499


Q ss_pred             CCCCCccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheEEeccCcCCCCccHHHHHHHHHHHHHHHHHH
Q 039780          505 LSFPYQTEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQII  584 (701)
Q Consensus       505 ~~f~~g~~y~~~l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~~~qi~  584 (701)
                      ++|+||..||..+++++|+++||+++|+++|+|++||++.|++||||++|||++++||||++||.+++++++|++++|++
T Consensus       241 ~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~es~G~~~~~~~~~~~~~l~i~q~~  320 (325)
T PF02714_consen  241 PPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYESGGRLWPTAFNRLLFGLVIFQFT  320 (325)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 039780          585 ALGIF  589 (701)
Q Consensus       585 ~~g~f  589 (701)
                      |+|+|
T Consensus       321 ~~g~f  325 (325)
T PF02714_consen  321 MIGLF  325 (325)
T ss_pred             HHHhC
Confidence            99986

; GO: 0016020 membrane

>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport

Probab=100.00  E-value=5.7e-35  Score=279.56  Aligned_cols=156  Identities=30%  Similarity=0.497  Sum_probs=136.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCCCCcceecCccccccc-ccCCCCCCccCCCCCcchhhhhhcCChHHHHHhcCch
Q 039780            5 AFLTSVGINSAIAVLLFLLYSVLRKQPGNLNVYFGPRLALAS-ERKNYPPSLLRYLPSPSWVVKAWETTEDDILALGGMD   83 (701)
Q Consensus         5 ~~~tsl~in~~i~~~~~llF~~LR~~~~~~~vY~pr~~~~~~-~~~~~p~~~~~~~~~f~Wi~~~~~~~e~~i~~~~GlD   83 (701)
                      |+.+|+++|++++++++++|++||+|  +.++|+||...+++ .++++|.   ...++|+|++++++++|+|++++||+|
T Consensus         1 s~~~sl~~~~~i~~~~~~~F~~lR~~--~~~iY~pR~~~~~~~~~~~~~~---~~~g~f~Wi~~~~~~~d~~i~~~~GlD   75 (157)
T PF13967_consen    1 SFLTSLAINLIIFLVLLLLFCILRKR--FPRIYQPRSYLPHPEPERPPPL---PSRGFFGWIKPVFKISDDEILRHCGLD   75 (157)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhc--cHHhcccccccCCcccccCCCC---CCCCchHHHHHHHcCCHHHHHHHcCCC
Confidence            68999999999999999999999987  67899999987632 1222221   224579999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhheeeeeeeCCcccccCCCCCcccccccccccCCCcchHHHHHHHHHHHHHHHHHHH
Q 039780           84 ALVFVRIIVFSIRIFCIAAVICMFLVLPVNYYGKEMIHHDISSETLEIFTIANVKESSEWLWTHCFALYVITCSACGLLY  163 (701)
Q Consensus        84 a~~flrfl~~~i~if~~~~i~~~~ILlPvn~~g~~~~~~~~~~~~l~~lTisNv~~~s~~lw~h~i~~~~~~~~~~~~l~  163 (701)
                      |++|+||+|+++++|+++++++++||+|||++|++..+.....+++|++|++|++++++++|+|++++|+++++++++++
T Consensus        76 a~~flrflr~~~~~f~~~~i~~~~vLlPi~~~~~~~~~~~~~~~~l~~~tisnv~~~s~~lw~h~v~~~i~~~~~~~~l~  155 (157)
T PF13967_consen   76 AYVFLRFLRMLIKIFLFLSILSLPVLLPINYTGGDDDGDSDNESGLDRLTISNVPKGSSRLWAHVVFAYIFTFYVLYLLW  155 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheeeeEEeCCCCccccccccccccccHHhhcCCCCeehHHHHHHHHHHHHHHhhhe
Confidence            99999999999999999999999999999999887643222237999999999999999999999999999999999999


Q ss_pred             HH
Q 039780          164 FE  165 (701)
Q Consensus       164 ~e  165 (701)
                      +|
T Consensus       156 ~E  157 (157)
T PF13967_consen  156 RE  157 (157)
T ss_pred             eC
Confidence            86

>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel []

Probab=98.38  E-value=3.2e-05  Score=87.18  Aligned_cols=205  Identities=13%  Similarity=0.129  Sum_probs=135.2

Q ss_pred             HHHhchHHHHHHHHHHHhHHHHHHHHHhcCCcchhhhHhhhcchhhhhhhhHHHHHHHhhhhHHHHh--hhccCCCcHHH
Q 039780          372 VVTGYLPSVILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQL--TKLSSVKDVPK  449 (701)
Q Consensus       372 ii~g~lP~l~l~~l~~llP~i~~~ls~~eg~~t~S~~e~s~~~k~f~F~~vnvflv~~l~~s~~~~l--~~~~~p~~i~~  449 (701)
                      ++.+++-++.+.+++.+.-.+...+.++|.|.|.++.|.+...|.|.|+++|.+.-.... +.+...  +.+ +| +..+
T Consensus       164 ~~~~vl~~v~i~il~~iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-aF~~~~~~~~~-~~-~~~~  240 (452)
T PF04547_consen  164 LIPTVLNAVVILILNFIYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-AFFYGVRQEEC-QP-CLSR  240 (452)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccc-CC-CHHH
Confidence            333334444555566667778888999999999999999999999999999998643332 233322  111 22 2222


Q ss_pred             HHHHhcCchhHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHhhh-c----cCC----CC------------CCCCCCCCC
Q 039780          450 HLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNILKKFI-C----RIK----NN------------PPNGTLSFP  508 (701)
Q Consensus       450 ~l~~~lp~~s~FFi~yii~~~~~~~~~~Ll~~~~li~~~~~~~~-~----~~~----~~------------~~~~~~~f~  508 (701)
                       |       +.-+++.++++-+.+...|.+  .|.+....+++. .    ++.    ++            +-.+.++++
T Consensus       241 -L-------~~ql~~~~~~~qi~~~~~e~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~  310 (452)
T PF04547_consen  241 -L-------RIQLFTIMVTKQIINNLLEVV--LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYD  310 (452)
T ss_pred             -H-------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCC
Confidence             1       223344445554555555544  445444443331 1    111    00            012445555


Q ss_pred             Cc---cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheEEeccC---cCCCCccHHHHHHHHHHHHHHHH
Q 039780          509 YQ---TEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKS---YESGGQYWPIAHKTIIASLVLTQ  582 (701)
Q Consensus       509 ~g---~~y~~~l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~llyvy~~~---~esgG~~~~~~~~~~~~~l~~~q  582 (701)
                      -.   ..|..+..-+-....||++.|+...++++.-++-.-+|++.+++.++++   -.++=..|-.++.-+...-++..
T Consensus       311 ~~g~~~dY~emviQFGyv~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~tN  390 (452)
T PF04547_consen  311 PDGLFDDYLEMVIQFGYVTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVITN  390 (452)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHHH
Confidence            43   7888888888889999999999999999999999999999999988643   23333569999998877777777


Q ss_pred             HHHHHHH
Q 039780          583 IIALGIF  589 (701)
Q Consensus       583 i~~~g~f  589 (701)
                      ..++++-
T Consensus       391 ~~li~~~  397 (452)
T PF04547_consen  391 AALIAFT  397 (452)
T ss_pred             HHHHHhh
Confidence            7777665

>PF14703 DUF4463: Domain of unknown function (DUF4463)

Probab=96.48  E-value=0.0031  Score=53.65  Aligned_cols=22  Identities=23%  Similarity=0.458  Sum_probs=20.6

Q ss_pred             EEecchhHHHHHHHHHHHHHHh
Q 039780          223 MVHRSSRVQRLMNDAEKICRVF  244 (701)
Q Consensus       223 i~~~~~~L~~L~~~~e~~~~~l  244 (701)
                      ||||+++|++|+++|++++++|
T Consensus         1 i~rd~~~L~~Lv~~R~~~~~kL   22 (85)
T PF14703_consen    1 ICRDWSKLEKLVEEREKAVRKL   22 (85)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999988

>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]

Probab=96.25  E-value=0.16  Score=57.38  Aligned_cols=213  Identities=15%  Similarity=0.156  Sum_probs=115.9

Q ss_pred             hchHHHHHHHHHHHhHHHHH----HHHHhcCCcchhhhHhhhcchhhhhhhhHHHHHHHhhhhHHHHhhhccCCCcHHHH
Q 039780          375 GYLPSVILILFLYAAPPTMM----VFSTIEGSVSHSGRKKSACIKVLYFTIWNVFFVNVLSGSVIGQLTKLSSVKDVPKH  450 (701)
Q Consensus       375 g~lP~l~l~~l~~llP~i~~----~ls~~eg~~t~S~~e~s~~~k~f~F~~vnvflv~~l~~s~~~~l~~~~~p~~i~~~  450 (701)
                      .++|++++.++..++..+-+    +|.++|.|.|+|..+++...|.+.|+|+|.++--...+-...      |-..+...
T Consensus       312 s~lP~iv~~~li~~~t~~Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l~------d~~~Lk~~  385 (647)
T KOG2513|consen  312 SYLPTIVYAVLIPVLTRIYKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLLR------DMELLKQQ  385 (647)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cHHHHHHH
Confidence            67899998888877766655    556789999999999999999999999999864333321111      11112222


Q ss_pred             HHHhcCchhHHH------HHHHHHHHhhhhhHHhhhhH--HHHHHHHH--hhhc-------cCCCC-C----------CC
Q 039780          451 LAEAIPNQVGFF------MTYVLTSGWASLSVEIMQPF--FLLRNILK--KFIC-------RIKNN-P----------PN  502 (701)
Q Consensus       451 l~~~lp~~s~FF------i~yii~~~~~~~~~~Ll~~~--~li~~~~~--~~~~-------~~~~~-~----------~~  502 (701)
                      |+.-+-.+-.++      +.|...+.--+=  ...|..  ...-....  ....       +..|+ +          ..
T Consensus       386 l~~~li~sQ~l~~~~e~~~p~f~~~~~r~~--~~~~f~t~~~ae~~~s~~~~i~~~~~~~~~~s~~~~a~~~~~~~qa~~  463 (647)
T KOG2513|consen  386 LATLLITSQSLLNLMEIALPYFKIRTKRYE--NYIRFRTKSFAEELASAQAKIDGESPGFPAPSREPEAQLFPSLKQAEL  463 (647)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHhhhhhh--hhhhHHHHHHHHhhccchhhhcccccCCCCcccccchhhcccchhhhh
Confidence            222111100000      011111100000  000000  00000000  0000       00011 0          01


Q ss_pred             CCCCCCCc---cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhheEEeccC----cCCCCccHHHHHHHHH
Q 039780          503 GTLSFPYQ---TEVPRLLLFGFLGFICSVMAPLILPFLLIYFVLAYLVYKNQIINVYKKS----YESGGQYWPIAHKTII  575 (701)
Q Consensus       503 ~~~~f~~g---~~y~~~l~~~~i~l~Ys~i~Plil~f~~~yF~l~y~v~Ky~llyvy~~~----~esgG~~~~~~~~~~~  575 (701)
                      +..--.|.   ..|=.+.+-|-....||++.|+--.+|++-=.+.+=++-+.++.+..++    .++=|. |..++..+-
T Consensus       464 E~~~~~ydgtf~Dylel~lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG~-Wq~~l~~lS  542 (647)
T KOG2513|consen  464 ESGLAEYDGTFDDYLELLLQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIGA-WQNALELLS  542 (647)
T ss_pred             cchhhhhcchhHHHHHHHHHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhHH-HHHHHHHHH
Confidence            11112222   2344556667778899999999999999999999999999999888754    455554 877777765


Q ss_pred             HHHHHHHHHHHHHHh-cccccc
Q 039780          576 ASLVLTQIIALGIFG-IKKSPV  596 (701)
Q Consensus       576 ~~l~~~qi~~~g~f~-lk~~~~  596 (701)
                      +--++....++|+-. .++.|.
T Consensus       543 vls~vtncaLi~~~~~~~~~~~  564 (647)
T KOG2513|consen  543 VLSCVTNCALIGMYPQVNKLWP  564 (647)
T ss_pred             HHHHHHhHHHHhccccccccCc
Confidence            555555555555544 344443

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=95.58  E-value=0.089  Score=56.99  Aligned_cols=139  Identities=18%  Similarity=0.224  Sum_probs=73.4

Q ss_pred             CCCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhH-H--------HHHHHHHHHHHHhcccccCCC
Q 039780          182 PNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRV-Q--------RLMNDAEKICRVFKGVSAEQK  252 (701)
Q Consensus       182 ~~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L-~--------~L~~~~e~~~~~lk~~~~~~~  252 (701)
                      ...+..||.|.+||.+..+   +.|+++|+++.  .|.++.++.|...= .        +-.++.++++..|.+.....+
T Consensus       103 ~~~~~~~LfVgnLp~~~te---~~L~~lF~~~G--~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr  177 (346)
T TIGR01659       103 TNNSGTNLIVNYLPQDMTD---RELYALFRTIG--PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK  177 (346)
T ss_pred             CCCCCcEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence            3456789999999998764   78999999864  57888888764310 0        113455666666522111000


Q ss_pred             ------CCCC-----CCCCccCc-chhh-hhhhcCccchhhh---hhhhh--hhhhhccCCceEEEEeCCHHHHHHHHHH
Q 039780          253 ------SKPC-----LLPCFCGA-PNSF-EILSNEPDNVRGN---IGLDI--SNLATEKENAVAFVCFKTRYAAVVAAEI  314 (701)
Q Consensus       253 ------~rp~-----~~~~~~~~-~~~y-~~~~~~~~~l~~~---i~~~~--~~~~~~~~~~~aFVtF~s~~~A~~a~q~  314 (701)
                            .+|.     ...+|.+. +... ++++   +++-++   |...+  .+....+..+.|||+|++..+|..|.+.
T Consensus       178 ~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L---~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~  254 (346)
T TIGR01659       178 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQL---DTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA  254 (346)
T ss_pred             eeeeecccccccccccceeEEeCCCCcccHHHH---HHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence                  0110     00122222 1011 1111   111111   10000  0011234568999999999999999998


Q ss_pred             hccCCC----CceEEeeC
Q 039780          315 LHSENP----MLWVTEMA  328 (701)
Q Consensus       315 ~~~~~p----~~~~v~~A  328 (701)
                      +.....    ..+.|..|
T Consensus       255 lng~~~~g~~~~l~V~~a  272 (346)
T TIGR01659       255 LNNVIPEGGSQPLTVRLA  272 (346)
T ss_pred             hCCCccCCCceeEEEEEC
Confidence            776532    23455555

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=93.92  E-value=0.46  Score=44.76  Aligned_cols=76  Identities=14%  Similarity=0.294  Sum_probs=53.3

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP  265 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~  265 (701)
                      ..+|.|.|||.+..+   +.|+++|+++  +.+.++.++.|.                                      
T Consensus        34 ~~~lfVgnL~~~~te---~~L~~~F~~~--G~I~~v~i~~d~--------------------------------------   70 (144)
T PLN03134         34 STKLFIGGLSWGTDD---ASLRDAFAHF--GDVVDAKVIVDR--------------------------------------   70 (144)
T ss_pred             CCEEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEEecC--------------------------------------
Confidence            468999999998764   7899999875  456666654320                                      


Q ss_pred             hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                              ...+..+.|||+|++..+|+.|.+.+....  ...+.|+.|
T Consensus        71 ------------------------~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a  111 (144)
T PLN03134         71 ------------------------ETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA  111 (144)
T ss_pred             ------------------------CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence                                    012345899999999999999998665442  234555555

>PLN03120 nucleic acid binding protein; Provisional

Probab=93.75  E-value=0.43  Score=48.99  Aligned_cols=33  Identities=30%  Similarity=0.235  Sum_probs=26.1

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHM  223 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i  223 (701)
                      .+||.|.|||.+..+   +.|++||+.+  |.+.++.+
T Consensus         4 ~rtVfVgNLs~~tTE---~dLrefFS~~--G~I~~V~I   36 (260)
T PLN03120          4 VRTVKVSNVSLKATE---RDIKEFFSFS--GDIEYVEM   36 (260)
T ss_pred             CCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEE
Confidence            579999999998664   7799999875  56666665

>PLN03121 nucleic acid binding protein; Provisional

Probab=92.95  E-value=0.66  Score=46.91  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=27.4

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV  224 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~  224 (701)
                      .-|||.|+||+.+..+   +.|++||+..  |.+.++.+.
T Consensus         4 ~g~TV~V~NLS~~tTE---~dLrefFS~~--G~I~~V~I~   38 (243)
T PLN03121          4 GGYTAEVTNLSPKATE---KDVYDFFSHC--GAIEHVEII   38 (243)
T ss_pred             CceEEEEecCCCCCCH---HHHHHHHHhc--CCeEEEEEe
Confidence            4589999999998764   7899999874  566666653

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]

Probab=92.88  E-value=0.44  Score=47.77  Aligned_cols=77  Identities=19%  Similarity=0.178  Sum_probs=55.3

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      +.-||.|+|+|.+.++   +.|++.|..+  +.+.++.+++|-                                     
T Consensus       188 D~~tvRvtNLsed~~E---~dL~eLf~~f--g~i~rvylardK-------------------------------------  225 (270)
T KOG0122|consen  188 DEATVRVTNLSEDMRE---DDLEELFRPF--GPITRVYLARDK-------------------------------------  225 (270)
T ss_pred             ccceeEEecCccccCh---hHHHHHhhcc--CccceeEEEEcc-------------------------------------
Confidence            4469999999998775   5677777765  345677776540                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCCCc--eEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPML--WVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p~~--~~v~~A  328 (701)
                                               ..+...|.|||||.++.+|+.|...+....-.+  ++|+.|
T Consensus       226 -------------------------~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws  266 (270)
T KOG0122|consen  226 -------------------------ETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS  266 (270)
T ss_pred             -------------------------ccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence                                     013456899999999999999998887665433  446665

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=92.18  E-value=0.74  Score=53.04  Aligned_cols=55  Identities=15%  Similarity=0.209  Sum_probs=38.6

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHH--------HHHHHHHHHHHhc
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQR--------LMNDAEKICRVFK  245 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~--------L~~~~e~~~~~lk  245 (701)
                      ..+|.|.|||.+..+   +.|.++|+++  +.+.++.+.+|.....+        -.+..+++++.++
T Consensus        58 ~~~lFVgnLp~~~tE---d~L~~~F~~~--G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~ln  120 (578)
T TIGR01648        58 GCEVFVGKIPRDLYE---DELVPLFEKA--GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLN  120 (578)
T ss_pred             CCEEEeCCCCCCCCH---HHHHHHHHhh--CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcC
Confidence            479999999998764   7799999986  56788888887433222        1245566666663

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=92.06  E-value=0.82  Score=49.51  Aligned_cols=37  Identities=19%  Similarity=0.325  Sum_probs=30.4

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRS  227 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~  227 (701)
                      .-+|+|.|||.+..+   +.|+++|+++  |.+.++.+++|-
T Consensus         3 ~~~l~V~nLp~~~~e---~~l~~~F~~~--G~i~~v~i~~d~   39 (352)
T TIGR01661         3 KTNLIVNYLPQTMTQ---EEIRSLFTSI--GEIESCKLVRDK   39 (352)
T ss_pred             CcEEEEeCCCCCCCH---HHHHHHHHcc--CCEEEEEEEEcC
Confidence            458999999998764   7899999986  578888888763

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]

Probab=91.60  E-value=0.44  Score=47.56  Aligned_cols=31  Identities=13%  Similarity=0.582  Sum_probs=23.5

Q ss_pred             EEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780          189 VLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV  224 (701)
Q Consensus       189 VlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~  224 (701)
                      |.|-|+|.+.+   +|.|++||+++  |++++..|+
T Consensus        15 ifVggL~w~T~---~~~l~~yFeqf--GeI~eavvi   45 (247)
T KOG0149|consen   15 IFVGGLAWETH---KETLRRYFEQF--GEIVEAVVI   45 (247)
T ss_pred             EEEcCcccccc---hHHHHHHHHHh--CceEEEEEE
Confidence            89999999876   47899999987  455555553

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=90.86  E-value=0.76  Score=49.78  Aligned_cols=75  Identities=11%  Similarity=0.160  Sum_probs=53.7

Q ss_pred             eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcch
Q 039780          187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPN  266 (701)
Q Consensus       187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~  266 (701)
                      ++|.|.|||.+..+   +.|+++|+.+  |.+.++.+++|-                                       
T Consensus       270 ~~lfV~NL~~~~~e---~~L~~~F~~f--G~v~~v~i~~d~---------------------------------------  305 (352)
T TIGR01661       270 YCIFVYNLSPDTDE---TVLWQLFGPF--GAVQNVKIIRDL---------------------------------------  305 (352)
T ss_pred             cEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeEcC---------------------------------------
Confidence            47999999987654   7899999976  467777775430                                       


Q ss_pred             hhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeC
Q 039780          267 SFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMA  328 (701)
Q Consensus       267 ~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~A  328 (701)
                                             ..++..|.|||+|.+..+|..|.+.++...-  ..+.|..+
T Consensus       306 -----------------------~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~  346 (352)
T TIGR01661       306 -----------------------TTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK  346 (352)
T ss_pred             -----------------------CCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence                                   0123458999999999999999998776532  23444443

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=90.80  E-value=1  Score=48.67  Aligned_cols=35  Identities=20%  Similarity=0.501  Sum_probs=27.6

Q ss_pred             eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780          187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR  226 (701)
Q Consensus       187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~  226 (701)
                      --+.|-.||+...+   +.|+++|++|  +.|.++.+.+|
T Consensus        35 vKlfVgqIprt~sE---~dlr~lFe~y--g~V~einl~kD   69 (510)
T KOG0144|consen   35 VKLFVGQIPRTASE---KDLRELFEKY--GNVYEINLIKD   69 (510)
T ss_pred             hhheeccCCccccH---HHHHHHHHHh--CceeEEEeecc
Confidence            34788999997654   6799999998  46788888776

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=90.46  E-value=0.88  Score=52.85  Aligned_cols=36  Identities=14%  Similarity=0.223  Sum_probs=30.0

Q ss_pred             eEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecch
Q 039780          188 TVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSS  228 (701)
Q Consensus       188 TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~  228 (701)
                      ||.|.|||.+..+   +.|+++|+++  |.+.+|.+++|..
T Consensus         2 sl~VgnLp~~vte---~~L~~~F~~~--G~v~~v~v~~d~~   37 (562)
T TIGR01628         2 SLYVGDLDPDVTE---AKLYDLFKPF--GPVLSVRVCRDSV   37 (562)
T ss_pred             eEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecCC
Confidence            7999999998764   7799999987  4688999998753

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=89.59  E-value=1.5  Score=50.56  Aligned_cols=38  Identities=26%  Similarity=0.211  Sum_probs=29.2

Q ss_pred             CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780          294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP  331 (701)
Q Consensus       294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P  331 (701)
                      ..+.|||.|++..+|..|.+.+....  ...+.|..|..+
T Consensus       268 ~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~  307 (578)
T TIGR01648       268 IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV  307 (578)
T ss_pred             ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence            45799999999999999998776553  345677887544

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]

Probab=87.29  E-value=2.8  Score=43.96  Aligned_cols=87  Identities=17%  Similarity=0.206  Sum_probs=60.5

Q ss_pred             eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcch
Q 039780          187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPN  266 (701)
Q Consensus       187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~  266 (701)
                      +-+.|+|||=+.+|   ..|+..|+++  |.|++|.|++|-                                       
T Consensus        97 kRLhVSNIPFrFRd---pDL~aMF~kf--G~VldVEIIfNE---------------------------------------  132 (376)
T KOG0125|consen   97 KRLHVSNIPFRFRD---PDLRAMFEKF--GKVLDVEIIFNE---------------------------------------  132 (376)
T ss_pred             ceeEeecCCccccC---ccHHHHHHhh--CceeeEEEEecc---------------------------------------
Confidence            45999999998776   4577788876  578888887650                                       


Q ss_pred             hhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeC----------CCCCCe
Q 039780          267 SFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMA----------PEPNDV  334 (701)
Q Consensus       267 ~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~A----------P~P~DI  334 (701)
                                               .-..|.+||||++..+|..|.+.++....  .+..|..|          |.|.-.
T Consensus       133 -------------------------RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v~p~~~  187 (376)
T KOG0125|consen  133 -------------------------RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKVLPYPN  187 (376)
T ss_pred             -------------------------CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcccCCCcc
Confidence                                     01237899999999999999998886532  22223222          455556


Q ss_pred             eecccCCc
Q 039780          335 LWSNLSIP  342 (701)
Q Consensus       335 iW~Nl~~~  342 (701)
                      -|.++...
T Consensus       188 g~~~~~a~  195 (376)
T KOG0125|consen  188 GWKLLPAV  195 (376)
T ss_pred             ccccccch
Confidence            67776664

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=86.75  E-value=2.8  Score=45.65  Aligned_cols=37  Identities=30%  Similarity=0.445  Sum_probs=29.3

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccCCCCce----EEeeC
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSENPMLW----VTEMA  328 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~p~~~----~v~~A  328 (701)
                      .|..|.|||.+.|-.+|.++.|.+...+-.-|    .|.+|
T Consensus       205 ~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWA  245 (506)
T KOG0117|consen  205 TKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWA  245 (506)
T ss_pred             ccccceEEEEeecchhHHHHHhhccCCceeecCCcceeecc
Confidence            56789999999999999999998877665433    45555

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=86.72  E-value=2.9  Score=48.59  Aligned_cols=37  Identities=16%  Similarity=0.318  Sum_probs=28.3

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR  226 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~  226 (701)
                      ...+|.|+|+|.+..+   +.|+++|+++  |.+.++.+.++
T Consensus       177 ~~~~l~V~nl~~~~te---e~L~~~F~~f--G~i~~~~i~~~  213 (562)
T TIGR01628       177 KFTNLYVKNLDPSVNE---DKLRELFAKF--GEITSAAVMKD  213 (562)
T ss_pred             CCCeEEEeCCCCcCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence            3457999999998754   7799999886  45677777665

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=86.16  E-value=0.88  Score=45.22  Aligned_cols=46  Identities=26%  Similarity=0.185  Sum_probs=36.1

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeCCCCCCeeec
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMAPEPNDVLWS  337 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~AP~P~DIiW~  337 (701)
                      .|..|.|||+|++..+|..|...++...-  ..+++++|-+++||+=+
T Consensus        49 ~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~   96 (221)
T KOG4206|consen   49 PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ   96 (221)
T ss_pred             CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence            45689999999999988888776665432  34678899999998866

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=84.19  E-value=7.6  Score=45.15  Aligned_cols=45  Identities=11%  Similarity=0.105  Sum_probs=33.0

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCeee
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDVLW  336 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DIiW  336 (701)
                      ++..|.|||.|.+..+|..|.+.+....  ....+|..|..|.|=.|
T Consensus       243 gksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~  289 (612)
T TIGR01645       243 RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALL  289 (612)
T ss_pred             CCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccC
Confidence            3467899999999999999998776553  34466777665555555

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length

Probab=82.49  E-value=0.9  Score=39.51  Aligned_cols=37  Identities=22%  Similarity=0.118  Sum_probs=29.3

Q ss_pred             hhhcccCCccCCccccccccccccCCCCCCCchhhhhcCCc
Q 039780          651 LKFAYCQFRLISLDLCNIRQADQQRDRDGIRDSEAETAGLT  691 (701)
Q Consensus       651 ~~~~y~~p~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  691 (701)
                      ...+|.||+++...  +  ..|+|+|+.|++..|-+..+..
T Consensus        32 ~~~ay~~Pa~~~~~--P--~lWIP~D~~GvS~~ei~~~~~~   68 (95)
T PF12621_consen   32 HKHAYLHPAVSAPQ--P--ILWIPRDPLGVSRQEIEETRKV   68 (95)
T ss_pred             HHhccCCHhHcCCC--C--eEEeecCCCCCCHHHHHHhhcC
Confidence            46799999997633  3  6999999999998887766543

The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=81.97  E-value=4.4  Score=46.10  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=27.9

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH  225 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~  225 (701)
                      ++||.|.|||.+..+   +.|++.|+.+  |.|.++.++.
T Consensus         2 s~vv~V~nLp~~~te---~~L~~~f~~f--G~V~~v~i~~   36 (481)
T TIGR01649         2 SPVVHVRNLPQDVVE---ADLVEALIPF--GPVSYVMMLP   36 (481)
T ss_pred             ccEEEEcCCCCCCCH---HHHHHHHHhc--CCeeEEEEEC
Confidence            479999999998764   7799999886  5677777664

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>PF13893 RRM_5: RNA recognition motif

Probab=81.62  E-value=2.6  Score=32.26  Aligned_cols=24  Identities=33%  Similarity=0.311  Sum_probs=21.4

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                      .+.|||+|.+..+|..|.+.++..
T Consensus        21 ~~~a~V~f~~~~~A~~a~~~l~~~   44 (56)
T PF13893_consen   21 RGFAFVEFASVEDAQKAIEQLNGR   44 (56)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCC
Confidence            599999999999999999977654

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	701
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 75/560 (13%), Positives = 151/560 (26%), Gaps = 168/560 (30%)

Query: 164 FEHKSISRTRLAYITGSPPNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSY--LSH 221
                +S+  + +I  S    S    L     W+      E V++F  +    +Y  L  
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLF----WTLLSKQEEMVQKFVEEVLRINYKFL-- 94

Query: 222 HMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEILSNEPDNV-RG 280
                 S ++        + R++     EQ+ +           N  ++ +    NV R 
Sbjct: 95  -----MSPIKTEQRQPSMMTRMY----IEQRDRLY---------NDNQVFA--KYNVSRL 134

Query: 281 NIGLDISNLATE-KENAVAFV-----CFKTRYAAVVAAEILHSE-------NPMLWVT-- 325
              L +     E +      +       KT     VA ++  S          + W+   
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKT----WVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 326 -----EMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVTGYLPSV 380
                E   E    L   +   +         +      ++   ++   S        + 
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENC 246

Query: 381 ILILFLYAAPPTMMVFSTIEGSVSHSGRKKS---ACIKVLYFTIWNVFFVNVLSGSVIGQ 437
           +L+L                 +V ++    +   +C K+L  T       + LS +    
Sbjct: 247 LLVL----------------LNVQNAKAWNAFNLSC-KIL-LTTRFKQVTDFLSAAT--- 285

Query: 438 LTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQ--PFFLLRNI---LKKF 492
            T   S+      L           + Y+       L  E++   P   L  I   ++  
Sbjct: 286 -TTHISLDHHSMTLTP--DEVKSLLLKYLDCRP-QDLPREVLTTNP-RRLSIIAESIRDG 340

Query: 493 ICRIKN--------------------NPPNG-----TLS-FPYQTEVPRLLLFGFLGFIC 526
           +    N                     P         LS FP    +P +LL      + 
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 527 SVMAPLILPFLLIYFVLA-------------YLVYKNQIINVYKKSYESGGQYWPIAHKT 573
                +++  L  Y ++              YL  K ++ N Y              H++
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL------------HRS 448

Query: 574 IIASLVLTQIIALGIFGIKKSPVASGFTIPLIVGTLLFNEYCRQRFFPSFQKIAAQVLTQ 633
           I+             + I K+  +     P +        Y        +  I    L  
Sbjct: 449 IVDH-----------YNIPKTFDSDDLIPPYLDQ------Y-------FYSHIGHH-LKN 483

Query: 634 MDQQDEQGGRMEEIYQQLKF 653
           + +  E+      ++   +F
Sbjct: 484 I-EHPERMTLFRMVFLDFRF 502

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 72/477 (15%), Positives = 146/477 (30%), Gaps = 136/477 (28%)

Query: 219 LSHHM-------VHRSSRVQRLMNDA-EKICRVFKGVSAEQKSKPCLLPCFCGAPNSFEI 270
           L + +          SS ++  ++    ++ R+ K     +  + CLL           +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK----SKPYENCLL-----------V 249

Query: 271 LSNEPDNVRGNIGLDISNLATEKENAVAFVC---FKTRYAAVV----AAEILH--SENPM 321
           L     NV+     +         NA    C     TR+  V     AA   H   ++  
Sbjct: 250 L----LNVQ-----NAKAW-----NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 322 LWVTEMAPEPNDVLWSNLSIPYRQLLTQLEQLSHAFPFLKGMFKKKFISHVVT-GYLPSV 380
           + +T    E   +L   L    + L  ++   +   P    +  +     + T       
Sbjct: 296 MTLTP--DEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGLATWDN---- 346

Query: 381 ILILFLYAAPPTMMVFSTIEGSVSHSGRKKSACIKVLY--FTIWNVFF---VN----VLS 431
               + +     +   + IE S++     + A  + ++   ++    F    +    +LS
Sbjct: 347 ----WKHVNCDKLT--TIIESSLNV---LEPAEYRKMFDRLSV----FPPSAHIPTILLS 393

Query: 432 ---GSVIGQLTKLSSVKDVPKHLAEAIPNQVGFFMTYVLTSGWASLSVEIMQPFFLLRNI 488
                VI     +   K     L E  P +     T  + S +  L V++   + L R+I
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKE----STISIPSIYLELKVKLENEYALHRSI 449

Query: 489 LKKFICRIKNNPPNGTLSFP----YQTEVPRLLLFGFLGF--ICSVMAPLILPFLLIYFV 542
           +  +   I     +  L  P    Y         +  +G           +  F +++  
Sbjct: 450 VDHY--NIPKTFDSDDLIPPYLDQY--------FYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 543 LAYLVYKNQIINVYKKSYESGGQYWPIAHKTIIASLVLTQIIALGIFGIKKSPVASGFTI 602
             +L  + +I +       SG           I +  L Q+     +     P       
Sbjct: 500 FRFL--EQKIRHDSTAWNASGS----------ILNT-LQQLKFYKPYICDNDPKYER--- 543

Query: 603 PLIVGTLLFNEYCRQRFFPSFQKIAAQV-------LTQMDQQDEQGGRMEEIYQQLK 652
             +V  +L        F P   KI   +       L ++    E     EE ++Q++
Sbjct: 544 --LVNAIL-------DFLP---KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	701
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	96.76
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	96.73
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	96.59
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	96.55
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	96.46
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	96.33
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	96.33
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	96.31
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	96.31
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	96.3
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	96.23
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	96.22
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	96.2
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	96.15
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	96.13
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	96.12
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	96.11
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	96.1
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	96.07
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	96.05
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	96.01
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	95.99
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	95.98
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	95.94
2div_A	99	TRNA selenocysteine associated protein; structural	95.9
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	95.89
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	95.89
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	95.89
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	95.87
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	95.85
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	95.85
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	95.81
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	95.8
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	95.77
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	95.75
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	95.7
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	95.69
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	95.68
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	95.68
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	95.67
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	95.66
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	95.66
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	95.64
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	95.61
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	95.58
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	95.58
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	95.58
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	95.57
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	95.52
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	95.49
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	95.47
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	95.47
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	95.45
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	95.45
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	95.44
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	95.42
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	95.41
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	95.4
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	95.37
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	95.35
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	95.34
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	95.34
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	95.32
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	95.31
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	95.29
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	95.23
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	95.23
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	95.16
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	95.16
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	95.15
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	95.1
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	95.07
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	95.02
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	95.0
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	94.99
1x4e_A	85	RNA binding motif, single-stranded interacting pro	94.9
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	94.88
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	94.86
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	94.84
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	94.78
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	94.78
1x5o_A	114	RNA binding motif, single-stranded interacting pro	94.74
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	94.69
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	94.66
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	94.56
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	94.55
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	94.55
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	94.53
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	94.52
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	94.51
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	94.44
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	94.43
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	94.39
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	94.39
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	94.36
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	94.36
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	94.33
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	94.29
2dis_A	109	Unnamed protein product; structural genomics, RRM	94.29
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	94.23
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	94.14
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	94.1
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	94.06
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	94.0
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	93.94
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	93.91
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	93.91
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	93.88
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	93.88
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	93.87
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	93.85
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	93.8
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	93.79
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	93.77
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	93.74
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	93.61
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	93.57
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	93.54
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	93.51
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	93.49
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	93.47
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	93.38
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	93.24
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	93.2
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	93.06
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	92.97
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	92.92
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	92.87
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	92.78
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	92.74
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	92.6
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	92.46
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	92.37
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	92.25
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	92.18
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	91.91
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	91.89
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	91.89
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	91.74
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	91.7
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	91.61
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	91.51
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	91.12
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	90.96
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	90.62
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	90.25
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	90.11
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	89.91
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	89.81
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	89.41
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	89.09
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	88.68
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	88.12
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	85.48
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	85.0
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	84.98
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	84.8
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	84.79
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	84.24
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	82.9
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	82.09
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	80.86
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	80.56
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	80.11

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=96.76  E-value=0.0044  Score=52.74  Aligned_cols=80  Identities=18%  Similarity=0.200  Sum_probs=55.6

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...-||.|+|||.+..+   +.|+++|+++.+-.+.++.+++|                                     
T Consensus         7 ~~m~tlfV~nL~~~~te---e~L~~~F~~~G~i~v~~v~i~~d-------------------------------------   46 (95)
T 2lkz_A            7 HHMDTIILRNIAPHTVV---DSIMTALSPYASLAVNNIRLIKD-------------------------------------   46 (95)
T ss_dssp             CCCCEEEEESCCTTCCH---HHHHHHSTTTCCCCGGGEECCCC-------------------------------------
T ss_pred             CccCEEEEeCCCCcCCH---HHHHHHHHhhCCccEEEEEEEec-------------------------------------
Confidence            44569999999998764   78999998875434444444221                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC------CceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP------MLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p------~~~~v~~A  328 (701)
                                               ...++..|.|||+|.+..+|+.|.+.++...+      ..+.|+.|
T Consensus        47 -------------------------~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A   92 (95)
T 2lkz_A           47 -------------------------KQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA   92 (95)
T ss_dssp             -------------------------SSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred             -------------------------CCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence                                     00134568999999999999999998776532      24556665

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.73  E-value=0.013  Score=49.09  Aligned_cols=82  Identities=13%  Similarity=0.137  Sum_probs=57.8

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      +..+||.|.|||.+..+   +.|+++|+++  +.+.++.+.+|-                                    
T Consensus         3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~------------------------------------   41 (95)
T 2dnz_A            3 SGSSGLYVGSLHFNITE---DMLRGIFEPF--GKIDNIVLMKDS------------------------------------   41 (95)
T ss_dssp             SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEECCS------------------------------------
T ss_pred             CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEeecC------------------------------------
Confidence            45689999999998654   6799999876  345555553210                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPN  332 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~  332 (701)
                                                ...+..+.|||+|++..+|..|.+.+....  ...+.|+.|.++.
T Consensus        42 --------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   86 (95)
T 2dnz_A           42 --------------------------DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL   86 (95)
T ss_dssp             --------------------------SSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred             --------------------------CCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence                                      012456899999999999999998766543  3456777775443

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=96.59  E-value=0.008  Score=51.38  Aligned_cols=77  Identities=16%  Similarity=0.165  Sum_probs=55.4

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      +..+|.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-                           .         
T Consensus        18 ~gt~lfV~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~---------------------------~---------   56 (99)
T 4fxv_A           18 QGTNLIVNYLPQNMTQ---DELRSLFSSI--GEVESAKLIRDK---------------------------V---------   56 (99)
T ss_dssp             CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECS---------------------------S---------
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEeEeeecC---------------------------C---------
Confidence            3468999999998764   7799999986  466676664430                           0         


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                .++..|.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        57 --------------------------tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A   96 (99)
T 4fxv_A           57 --------------------------AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA   96 (99)
T ss_dssp             --------------------------SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             --------------------------CCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence                                      02335799999999999999998776542  234667766

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=96.55  E-value=0.014  Score=50.73  Aligned_cols=84  Identities=15%  Similarity=0.206  Sum_probs=59.8

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      .+..+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++-                                   
T Consensus        23 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~-----------------------------------   62 (108)
T 2jrs_A           23 SAGPMRLYVGSLHFNITE---DMLRGIFEPF--GRIESIQLMMDS-----------------------------------   62 (108)
T ss_dssp             CSSCEEEEEECCCSSCCH---HHHHHHHTTT--SCEEEEEEEEET-----------------------------------
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC-----------------------------------
Confidence            455789999999997654   6799999876  356566554320                                   


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPND  333 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~D  333 (701)
                                                 ..++..|.|||+|.+..+|..|.+.+....  ...+.|+.|-+..|
T Consensus        63 ---------------------------~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~d  108 (108)
T 2jrs_A           63 ---------------------------ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD  108 (108)
T ss_dssp             ---------------------------TTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSCC
T ss_pred             ---------------------------CCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCCC
Confidence                                       002335799999999999999998776543  34577888766554

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=96.46  E-value=0.012  Score=51.48  Aligned_cols=80  Identities=15%  Similarity=0.096  Sum_probs=58.9

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      +..+||.|.|+|.+..+   +.|+++|+++  |.+.++.+.+|-                                    
T Consensus         4 ~p~~~lfV~nL~~~~te---~~L~~~F~~~--G~i~~v~i~~d~------------------------------------   42 (110)
T 3s8s_A            4 IPLKEVTFARLNDNVRE---TFLKDMCRKY--GEVEEVEILLHP------------------------------------   42 (110)
T ss_dssp             SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECT------------------------------------
T ss_pred             CCCcEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEECC------------------------------------
Confidence            45689999999998764   7799999886  567777765430                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                                                ...+..|.|||+|++..+|+.|.+.+....  ...+.|+.|+.
T Consensus        43 --------------------------~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~   85 (110)
T 3s8s_A           43 --------------------------RTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK   85 (110)
T ss_dssp             --------------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred             --------------------------CCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence                                      002345899999999999999999876653  34566777753

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.33  E-value=0.024  Score=48.22  Aligned_cols=79  Identities=16%  Similarity=0.220  Sum_probs=55.7

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++.  .+.++.+.++                            +       
T Consensus         9 ~~~~~~l~v~nLp~~~t~---~~l~~~f~~~G--~i~~v~i~~~----------------------------~-------   48 (102)
T 1x5s_A            9 ASDEGKLFVGGLSFDTNE---QSLEQVFSKYG--QISEVVVVKD----------------------------R-------   48 (102)
T ss_dssp             CCCCSEEEEESCCTTCCH---HHHHHHHHHHS--CCCEEEECCC----------------------------S-------
T ss_pred             CCCCCEEEEECCCCCCCH---HHHHHHHHhcC--CeEEEEEEeC----------------------------C-------
Confidence            345689999999998754   67999998873  4555555221                            0       


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                 ...+..+.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        49 ---------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   89 (102)
T 1x5s_A           49 ---------------------------ETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA   89 (102)
T ss_dssp             ---------------------------SSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred             ---------------------------CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence                                       012346899999999999999998776543  345666665

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=96.33  E-value=0.0092  Score=49.79  Aligned_cols=80  Identities=11%  Similarity=0.132  Sum_probs=52.1

Q ss_pred             eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcch
Q 039780          187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPN  266 (701)
Q Consensus       187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~  266 (701)
                      +||.|.|+|.+..+   +.|+++|+++....+.++.+.+|-                                       
T Consensus         2 ~~l~V~nL~~~~t~---~~l~~~F~~~G~~~v~~v~i~~~~---------------------------------------   39 (90)
T 3p5t_L            2 IALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENR---------------------------------------   39 (90)
T ss_dssp             --CEEESCCTTCCH---HHHHHHHHTTTCCCCCCEEEEECT---------------------------------------
T ss_pred             eEEEEeCCCCCCCH---HHHHHHHHHhCCCceEEEEEEecC---------------------------------------
Confidence            68999999998754   779999987642256666654320                                       


Q ss_pred             hhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780          267 SFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP  331 (701)
Q Consensus       267 ~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P  331 (701)
                                             ..++..|.|||+|.+..+|..|.+.+....  ...+.|+.|..|
T Consensus        40 -----------------------~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~   83 (90)
T 3p5t_L           40 -----------------------ANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL   83 (90)
T ss_dssp             -----------------------TTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred             -----------------------CCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence                                   012345899999999999999998777653  345667666443

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=96.31  E-value=0.015  Score=47.75  Aligned_cols=78  Identities=22%  Similarity=0.234  Sum_probs=53.8

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ++.+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++-                                    
T Consensus         4 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------   42 (87)
T 3bs9_A            4 GSHFHVFVGDLSPEITT---AAIAAAFAPF--GRISDARVVKDM------------------------------------   42 (87)
T ss_dssp             --CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred             CCceEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEecC------------------------------------
Confidence            45689999999998654   7799999986  356666553320                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                ...+..|.|||+|++..+|..|.+.+....  ...+.++.|
T Consensus        43 --------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   83 (87)
T 3bs9_A           43 --------------------------ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA   83 (87)
T ss_dssp             --------------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             --------------------------CCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence                                      002345799999999999999998766542  234556554

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=96.31  E-value=0.0075  Score=50.62  Aligned_cols=36  Identities=17%  Similarity=0.016  Sum_probs=26.8

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC---CCCceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE---NPMLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~---~p~~~~v~~A  328 (701)
                      +..|.|||+|.+..+|..|.+.+.+.   +...+.|+.|
T Consensus        42 ~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a   80 (91)
T 2lxi_A           42 QSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS   80 (91)
T ss_dssp             CCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred             CcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence            45689999999999999998765332   2345667766

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=96.30  E-value=0.031  Score=47.91  Aligned_cols=80  Identities=15%  Similarity=0.252  Sum_probs=56.7

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++.  .+.++.+.+|                                    
T Consensus        10 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~------------------------------------   48 (106)
T 2dgp_A           10 DHDAIKLFIGQIPRNLDE---KDLKPLFEEFG--KIYELTVLKD------------------------------------   48 (106)
T ss_dssp             CTTCEEEEEESCCTTCCH---HHHHHHHHHHS--CCCEEECCCC------------------------------------
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeeEEEEEec------------------------------------
Confidence            455789999999998764   67999999873  4555554211                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC-----CCceEEeeCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN-----PMLWVTEMAP  329 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~-----p~~~~v~~AP  329 (701)
                                                ....+..+.|||+|.+..+|..|.+.++...     ...+.|+.|-
T Consensus        49 --------------------------~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~   94 (106)
T 2dgp_A           49 --------------------------RFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD   94 (106)
T ss_dssp             --------------------------SSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred             --------------------------CCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence                                      0012346899999999999999998776543     3456777764

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.23  E-value=0.038  Score=46.72  Aligned_cols=81  Identities=14%  Similarity=0.253  Sum_probs=55.6

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++  +.+.++.+.+|                                    
T Consensus         7 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------   45 (99)
T 2dgs_A            7 GSKSNKIFVGGIPHNCGE---TELREYFKKF--GVVTEVVMIYD------------------------------------   45 (99)
T ss_dssp             CSSCCEEEEESCCSSCCH---HHHHHHHSSS--SCEEEEEECCC------------------------------------
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeC------------------------------------
Confidence            345689999999998764   7799999876  35555554221                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP  331 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P  331 (701)
                                                ....+..+.|||+|.+..+|..|.+ +....  ...+.|+.|-.+
T Consensus        46 --------------------------~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~   89 (99)
T 2dgs_A           46 --------------------------AEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR   89 (99)
T ss_dssp             --------------------------TTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred             --------------------------CCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence                                      0012346899999999999999998 54332  345667776433

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.22  E-value=0.03  Score=47.31  Aligned_cols=81  Identities=19%  Similarity=0.207  Sum_probs=55.7

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++.  .+.++.+.++                                     
T Consensus         6 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~-------------------------------------   43 (99)
T 1whw_A            6 SGSGRLFVRNLSYTSSE---EDLEKLFSAYG--PLSELHYPID-------------------------------------   43 (99)
T ss_dssp             CSCEEEEEECCCTTCCH---HHHHHHHHTTS--CEEEEECCCC-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEeEEEEEec-------------------------------------
Confidence            45689999999998754   67999998763  4444443111                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEP  331 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P  331 (701)
                                   +            ...+..+.|||+|.+..+|..|.+.+...  ....+.|+.|-.+
T Consensus        44 -------------~------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   88 (99)
T 1whw_A           44 -------------S------------LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK   88 (99)
T ss_dssp             -------------T------------TTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred             -------------C------------CCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence                         0            01345689999999999999999876644  2345667776443

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=96.20  E-value=0.02  Score=46.81  Aligned_cols=68  Identities=16%  Similarity=0.210  Sum_probs=48.9

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ++.+||.|.|+|.+..+   +.|+++|+++.  .+.++.+.+|.                                    
T Consensus         5 ~~~~~l~V~nl~~~~~~---~~l~~~f~~~G--~i~~v~i~~~~------------------------------------   43 (85)
T 3mdf_A            5 TTKRVLYVGGLAEEVDD---KVLHAAFIPFG--DITDIQIPLDY------------------------------------   43 (85)
T ss_dssp             CCSSEEEEECCCTTCCH---HHHHHHHGGGS--CEEEEECCEET------------------------------------
T ss_pred             CCCCEEEEECCCCCCCH---HHHHHHHhccC--CEEEEEEEECC------------------------------------
Confidence            45689999999998754   77999998863  45444432110                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                                                ...+..+.|||+|.+..+|..|.+.++..
T Consensus        44 --------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~   72 (85)
T 3mdf_A           44 --------------------------ETEKHRGFAFVEFELAEDAAAAIDNMNES   72 (85)
T ss_dssp             --------------------------TTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred             --------------------------CCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence                                      01234689999999999999999876654

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.15  E-value=0.026  Score=47.39  Aligned_cols=37  Identities=19%  Similarity=0.143  Sum_probs=28.0

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                      +..+.|||+|.+..+|..|.+.++...  ...+.|+.|-
T Consensus        46 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   84 (96)
T 1x5t_A           46 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF   84 (96)
T ss_dssp             SCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred             CcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence            456899999999999999998766542  3445677663

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=96.13  E-value=0.02  Score=47.15  Aligned_cols=36  Identities=14%  Similarity=0.060  Sum_probs=27.3

Q ss_pred             CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                      ..|.|||+|.+..+|..|.+.+....  ...+.++.|-
T Consensus        46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   83 (88)
T 4a8x_A           46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL   83 (88)
T ss_dssp             ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             CCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence            56899999999999999999776543  3345566653

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=96.12  E-value=0.029  Score=48.92  Aligned_cols=79  Identities=13%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      +..+||.|.|||.+..+   +.|+++|+++  +.+.++.+.+|-                                    
T Consensus        23 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------   61 (115)
T 2cpz_A           23 PEGANLFIYHLPQEFGD---QDLLQMFMPF--GNVVSAKVFIDK------------------------------------   61 (115)
T ss_dssp             STTCCEEEESCCSSCCH---HHHHHHHGGG--SCCSEEEEEECS------------------------------------
T ss_pred             CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC------------------------------------
Confidence            45689999999998764   7799999987  356666654320                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                                  +              ..+..+.|||+|.+..+|..|.+.+....  ...+.|+.|-
T Consensus        62 ------------~--------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  103 (115)
T 2cpz_A           62 ------------Q--------------TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR  103 (115)
T ss_dssp             ------------S--------------SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             ------------C--------------CCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence                        0              02335799999999999999998766542  3345666653

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=96.11  E-value=0.011  Score=55.12  Aligned_cols=37  Identities=16%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR  226 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~  226 (701)
                      +++||.|.|||.+..+   +.|+++|+++  |.+.++.+.++
T Consensus         2 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~   38 (175)
T 3nmr_A            2 DAIKMFVGQVPRTWSE---KDLRELFEQY--GAVYEINVLRD   38 (175)
T ss_dssp             CCEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEE
T ss_pred             CceEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEec
Confidence            4689999999998764   7799999987  45777777765

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.10  E-value=0.035  Score=47.49  Aligned_cols=80  Identities=19%  Similarity=0.164  Sum_probs=56.0

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++  +.+.++.+.+|                                    
T Consensus        12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------   50 (105)
T 1x5u_A           12 RNQDATVYVGGLDEKVSE---PLLWELFLQA--GPVVNTHMPKD------------------------------------   50 (105)
T ss_dssp             CCTTTEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCBC------------------------------------
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec------------------------------------
Confidence            345689999999998754   6799999886  34545443211                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                                    .            ...+..+.|||+|.+..+|..|.+.++...  ...+.|+.|-
T Consensus        51 --------------~------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   93 (105)
T 1x5u_A           51 --------------R------------VTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS   93 (105)
T ss_dssp             --------------S------------SSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred             --------------C------------CCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence                          0            012356899999999999999999776543  3456777764

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.07  E-value=0.022  Score=47.61  Aligned_cols=79  Identities=23%  Similarity=0.350  Sum_probs=53.4

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      .++.++|.|.|||.+..+   +.|+++|+++.  .+.++.+.++                            +       
T Consensus        13 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~G--~v~~v~i~~~----------------------------~-------   52 (94)
T 2e5h_A           13 APSKSTVYVSNLPFSLTN---NDLYRIFSKYG--KVVKVTIMKD----------------------------K-------   52 (94)
T ss_dssp             CCCTTSEEEESCCTTSCH---HHHHHHTTTTS--CEEEEEECCC----------------------------S-------
T ss_pred             CCCCCEEEEECCCCCCCH---HHHHHHHHhcC--CeEEEEEEeC----------------------------C-------
Confidence            456789999999997754   67999998763  4555554221                            0       


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                 ...+..+.|||+|++..+|..|.+.+....  ...+.|+.|
T Consensus        53 ---------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   93 (94)
T 2e5h_A           53 ---------------------------DTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA   93 (94)
T ss_dssp             ---------------------------SSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred             ---------------------------CCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence                                       002345799999999999999998765432  233445544

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=96.05  E-value=0.029  Score=47.23  Aligned_cols=38  Identities=13%  Similarity=0.189  Sum_probs=28.8

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPE  330 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~  330 (701)
                      +..|.|||+|.+..+|..|.+.+...  +...+.|+.|-.
T Consensus        42 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   81 (96)
T 2x1f_A           42 RSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN   81 (96)
T ss_dssp             CBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             ccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence            44689999999999999999876654  234566777643

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=96.01  E-value=0.038  Score=45.92  Aligned_cols=79  Identities=14%  Similarity=0.175  Sum_probs=54.3

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....++|.|.|||.+..+   +.|+++|+++  +.+.++.+.++                                    
T Consensus         5 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~~~i~~~------------------------------------   43 (92)
T 2dgv_A            5 SSGACQIFVRNLPFDFTW---KMLKDKFNEC--GHVLYADIKME------------------------------------   43 (92)
T ss_dssp             SSSCCEEEECSCCTTCCH---HHHHHHHHTT--SCEEEEEEEES------------------------------------
T ss_pred             CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcc------------------------------------
Confidence            355689999999997654   6789999876  34444443210                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                                                  ..+..+.|||+|.+..+|..|.+.++...  ...+.|+.|-.
T Consensus        44 ----------------------------~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   85 (92)
T 2dgv_A           44 ----------------------------NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN   85 (92)
T ss_dssp             ----------------------------SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred             ----------------------------CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence                                        02335799999999999999998766543  23455666533

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=95.99  E-value=0.036  Score=45.03  Aligned_cols=76  Identities=22%  Similarity=0.385  Sum_probs=53.7

Q ss_pred             eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcch
Q 039780          187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPN  266 (701)
Q Consensus       187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~  266 (701)
                      +||.|.|||.+..+   +.|+++|+++  |.+.++.+.++.                                       
T Consensus         2 ~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~---------------------------------------   37 (83)
T 3md1_A            2 FNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMWDM---------------------------------------   37 (83)
T ss_dssp             EEEEEECCCTTCCH---HHHHHHHTTS--TTEEEEEEEECT---------------------------------------
T ss_pred             eEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEcC---------------------------------------
Confidence            79999999998754   7789999876  456666554320                                       


Q ss_pred             hhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          267 SFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       267 ~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                                             ...+..|.|||+|.+..+|..|.+.+....  ...+.++.|-
T Consensus        38 -----------------------~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~   79 (83)
T 3md1_A           38 -----------------------QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA   79 (83)
T ss_dssp             -----------------------TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             -----------------------CCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence                                   002335799999999999999998776543  3345666663

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=95.98  E-value=0.048  Score=47.49  Aligned_cols=79  Identities=23%  Similarity=0.264  Sum_probs=55.6

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++  +.+.++.+.++-                                   
T Consensus        12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~-----------------------------------   51 (115)
T 2dgo_A           12 TSNHFHVFVGDLSPEITT---EDIKAAFAPF--GRISDARVVKDM-----------------------------------   51 (115)
T ss_dssp             STTCEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred             CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC-----------------------------------
Confidence            345789999999998764   7799999987  356666654320                                   


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                 ...+..+.|||+|.+..+|+.|.+.+....  ...+.|+.|
T Consensus        52 ---------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   92 (115)
T 2dgo_A           52 ---------------------------ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA   92 (115)
T ss_dssp             ---------------------------TTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             ---------------------------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence                                       002335799999999999999998776542  234556655

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.94  E-value=0.041  Score=46.60  Aligned_cols=78  Identities=13%  Similarity=0.217  Sum_probs=55.4

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  +.+.++.+.++                                     
T Consensus        15 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~-------------------------------------   52 (100)
T 2do4_A           15 LEKHKLFISGLPFSCTK---EELEEICKAH--GTVKDLRLVTN-------------------------------------   52 (100)
T ss_dssp             CCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEEC-------------------------------------
Confidence            45689999999998754   6799999876  35555555322                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP  329 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP  329 (701)
                                   +             ..+..+.|||+|++..+|..|.+.+...  +...+.|+.|-
T Consensus        53 -------------~-------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   94 (100)
T 2do4_A           53 -------------R-------------AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN   94 (100)
T ss_dssp             -------------T-------------TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred             -------------C-------------CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence                         0             0233579999999999999999876643  33456777764

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.90  E-value=0.045  Score=46.21  Aligned_cols=69  Identities=10%  Similarity=0.071  Sum_probs=50.1

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcc-eEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYL-SHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCF  261 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~-~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~  261 (701)
                      ....+||.|.|||.+..+   +.|+++|+++.  .+. ++.+.+|-                                  
T Consensus         6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~~v~i~~~~----------------------------------   46 (99)
T 2div_A            6 SGMAASLWMGDLEPYMDE---NFISRAFATMG--ETVMSVKIIRNR----------------------------------   46 (99)
T ss_dssp             CSSSSEEEECSCCTTCCH---HHHHHHHHHTT--CCCCEEEEEECS----------------------------------
T ss_pred             CCCccEEEEeCCCCCCCH---HHHHHHHHHhC--CcceEEEEeecC----------------------------------
Confidence            345689999999998754   77999999863  455 66654320                                  


Q ss_pred             cCcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780          262 CGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       262 ~~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                                                  ...+..+.|||+|.+..+|+.|.+.+...
T Consensus        47 ----------------------------~~g~~~g~afV~f~~~~~a~~A~~~l~g~   75 (99)
T 2div_A           47 ----------------------------LTGIPAGYCFVEFADLATAEKCLHKINGK   75 (99)
T ss_dssp             ----------------------------SSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred             ----------------------------CCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence                                        00233479999999999999999876543

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=95.89  E-value=0.047  Score=46.71  Aligned_cols=78  Identities=18%  Similarity=0.177  Sum_probs=55.2

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-                                    
T Consensus        21 ~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~------------------------------------   59 (106)
T 1p27_B           21 VEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLDR------------------------------------   59 (106)
T ss_dssp             TTBEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCeEEEEEEecC------------------------------------
Confidence            44689999999998754   6799999887  456666654320                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                ...+..|.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        60 --------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a  100 (106)
T 1p27_B           60 --------------------------RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC  100 (106)
T ss_dssp             --------------------------TTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred             --------------------------CCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence                                      002335799999999999999998766543  344566665

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=95.89  E-value=0.062  Score=47.12  Aligned_cols=77  Identities=17%  Similarity=0.171  Sum_probs=55.1

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ..+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++                                      
T Consensus         6 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~--------------------------------------   42 (116)
T 2fy1_A            6 HPGKLFIGGLNRETNE---KMLKAVFGKH--GPISEVLLIKD--------------------------------------   42 (116)
T ss_dssp             SCCEEEEECCTTTCCH---HHHHHHHHTS--SCCSEEEEECS--------------------------------------
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC--------------------------------------
Confidence            4579999999998654   7799999876  34656555321                                      


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                                  +             ..+..+.|||+|++..+|..|.+.+....  ...+.|+.|-
T Consensus        43 ------------~-------------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   84 (116)
T 2fy1_A           43 ------------R-------------TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK   84 (116)
T ss_dssp             ------------T-------------TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred             ------------C-------------CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence                        0             02346899999999999999998776543  3456666663

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.89  E-value=0.075  Score=45.18  Aligned_cols=78  Identities=17%  Similarity=0.269  Sum_probs=55.1

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....++|.|.|||.+..+   +.|+++|+++  +.+.++.+.++                                    
T Consensus        12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~------------------------------------   50 (103)
T 2cq3_A           12 KSTPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFN------------------------------------   50 (103)
T ss_dssp             SCCCCEEEEESCCTTCCH---HHHHHHGGGT--SCEEEEEEECC------------------------------------
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec------------------------------------
Confidence            345689999999998764   6799999886  35555554321                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP  329 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP  329 (701)
                                   .               ....+.|||+|.+..+|..|.+.+...  +...+.|+.|-
T Consensus        51 -------------~---------------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   91 (103)
T 2cq3_A           51 -------------E---------------RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT   91 (103)
T ss_dssp             -------------T---------------TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             -------------C---------------CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence                         0               013579999999999999999876654  23446666664

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.87  E-value=0.032  Score=46.66  Aligned_cols=78  Identities=17%  Similarity=0.149  Sum_probs=54.0

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      +..+||.|.|||.+..+   +.|+++|+++  +.+.++.+.++-                                    
T Consensus        13 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~------------------------------------   51 (95)
T 2cqc_A           13 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYDQ------------------------------------   51 (95)
T ss_dssp             CGGGCEEEESCCSSCCH---HHHHHHHHTT--SCEEEEEEEECS------------------------------------
T ss_pred             CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEEcC------------------------------------
Confidence            45689999999998654   6799999886  356666554320                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                ...+..+.|||+|.+..+|..|.+.++...  ...+.|+.|
T Consensus        52 --------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   92 (95)
T 2cqc_A           52 --------------------------QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP   92 (95)
T ss_dssp             --------------------------SSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred             --------------------------CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence                                      001235799999999999999998765432  234455554

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=95.85  E-value=0.061  Score=45.89  Aligned_cols=78  Identities=19%  Similarity=0.227  Sum_probs=55.9

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      +..+||.|.|||.+..+   +.|+++|+++.  .+.++.+.++                                     
T Consensus        13 ~~~~~l~v~nLp~~~t~---~~l~~~F~~~G--~i~~v~i~~~-------------------------------------   50 (105)
T 2dnh_A           13 GRDRKLFVGMLNKQQSE---EDVLRLFQPFG--VIDECTVLRG-------------------------------------   50 (105)
T ss_dssp             CCCCEEEEESCCTTCCH---HHHHHHHTTTS--CEEEEEEEEC-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEEC-------------------------------------
Confidence            45689999999998754   67999998763  4555555322                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--C---CceEEeeCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--P---MLWVTEMAP  329 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p---~~~~v~~AP  329 (701)
                                  .              ..+..+.|||+|.+..+|..|.+.++...  .   ..+.|+.|-
T Consensus        51 ------------~--------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~   95 (105)
T 2dnh_A           51 ------------P--------------DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD   95 (105)
T ss_dssp             ------------S--------------SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred             ------------C--------------CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence                        0              01234799999999999999998776543  2   456777763

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=95.85  E-value=0.018  Score=53.45  Aligned_cols=37  Identities=11%  Similarity=0.199  Sum_probs=28.6

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR  226 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~  226 (701)
                      +.+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++
T Consensus         2 ~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i~~~   38 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTD---RELYALFRAI--GPINTCRIMRD   38 (168)
T ss_dssp             CCSEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEE
T ss_pred             CccEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEe
Confidence            4689999999998764   6799999986  45667766654

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=95.81  E-value=0.037  Score=48.44  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=53.3

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      +..+|.|.|||.+..+   +.|+++|+++  |.+.++.+.+|.                                     
T Consensus         4 ~~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~d~-------------------------------------   41 (115)
T 4f25_A            4 GSGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDE-------------------------------------   41 (115)
T ss_dssp             -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEET-------------------------------------
T ss_pred             CCCEEEECCCCCCCCH---HHHHHHHhcc--CCEEEEEEeecC-------------------------------------
Confidence            3468999999998764   7899999987  466666664320                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                 ....|.|||+|.+..+|+.|.+.++...  ...+.|+.|
T Consensus        42 ---------------------------~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a   80 (115)
T 4f25_A           42 ---------------------------NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF   80 (115)
T ss_dssp             ---------------------------TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             ---------------------------CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence                                       0113799999999999999998766543  234556655

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.80  E-value=0.073  Score=45.27  Aligned_cols=78  Identities=14%  Similarity=0.103  Sum_probs=55.0

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++.  .+.++.+.+|                                     
T Consensus        13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~-------------------------------------   50 (103)
T 2cqi_A           13 GQPRTLYVGNLSRDVTE---VLILQLFSQIG--PCKSCKMITE-------------------------------------   50 (103)
T ss_dssp             CCCCEEEEESCCTTCCH---HHHHHHHHHHS--CEEEEEEECC-------------------------------------
T ss_pred             CCCCEEEEeCCCccCCH---HHHHHHHHhcC--CEeEEEEEec-------------------------------------
Confidence            45689999999998754   77999998873  4555555321                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPE  330 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~  330 (701)
                                                 .....+.|||+|.+..+|..|.+.+...  ....+.|+.|-.
T Consensus        51 ---------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   92 (103)
T 2cqi_A           51 ---------------------------HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT   92 (103)
T ss_dssp             ---------------------------CCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             ---------------------------CCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence                                       0012479999999999999999876543  234566777643

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.77  E-value=0.043  Score=46.74  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=54.2

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  +.+.++.+.+|                                     
T Consensus        11 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~-------------------------------------   48 (103)
T 2dnm_A           11 DGMITLKVDNLTYRTSP---DSLRRVFEKY--GRVGDVYIPRE-------------------------------------   48 (103)
T ss_dssp             SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEECCBC-------------------------------------
T ss_pred             CCCeEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEeC-------------------------------------
Confidence            45689999999998754   7799999876  34544443211                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                   .            ...+..+.|||+|.+..+|..|.+.++...  ...+.|+.|
T Consensus        49 -------------~------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   90 (103)
T 2dnm_A           49 -------------P------------HTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA   90 (103)
T ss_dssp             -------------S------------SSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred             -------------C------------CCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence                         0            012346899999999999999998766543  234566665

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.75  E-value=0.041  Score=46.89  Aligned_cols=80  Identities=18%  Similarity=0.213  Sum_probs=55.8

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++  +.+.++.+.++-                                   
T Consensus        12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~-----------------------------------   51 (103)
T 2cq0_A           12 ADDNATIRVTNLSEDTRE---TDLQELFRPF--GSISRIYLAKDK-----------------------------------   51 (103)
T ss_dssp             CSSSEEEEEESCCTTCCH---HHHHTTSTTT--CCEEEEEEEECS-----------------------------------
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeecC-----------------------------------
Confidence            355789999999998754   6788999876  356566553320                                   


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                                                 ...+..+.|||+|.+..+|..|.+.+....  ...+.|+.|-
T Consensus        52 ---------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (103)
T 2cq0_A           52 ---------------------------TTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK   93 (103)
T ss_dssp             ---------------------------SSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             ---------------------------CCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence                                       002335799999999999999999766543  3345666663

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=95.70  E-value=0.065  Score=47.99  Aligned_cols=44  Identities=16%  Similarity=0.195  Sum_probs=33.7

Q ss_pred             CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCeeec
Q 039780          294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDVLWS  337 (701)
Q Consensus       294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DIiW~  337 (701)
                      ..|.|||+|.+..+|..|.+.+....  ...+.|+.|-.+.|....
T Consensus        71 ~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~  116 (127)
T 2a3j_A           71 NSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE  116 (127)
T ss_dssp             SCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred             cCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence            45899999999999999998876653  345678888777666543

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=95.69  E-value=0.046  Score=45.71  Aligned_cols=78  Identities=18%  Similarity=0.211  Sum_probs=54.2

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++  +.+.++.+.+|                                    
T Consensus        13 ~~~~~~l~v~nlp~~~~~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------   51 (95)
T 2ywk_A           13 EEADRTVFVGNLEARVRE---EILYELFLQA--GPLTKVTICKD------------------------------------   51 (95)
T ss_dssp             TTGGGEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC------------------------------------
T ss_pred             CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC------------------------------------
Confidence            355789999999998754   7799999886  35555555322                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                   .              ..+..+.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        52 -------------~--------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   92 (95)
T 2ywk_A           52 -------------R--------------EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP   92 (95)
T ss_dssp             -------------T--------------TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             -------------C--------------CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence                         0              02235799999999999999998766543  233445544

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.68  E-value=0.041  Score=48.03  Aligned_cols=79  Identities=16%  Similarity=0.253  Sum_probs=54.2

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++  +.+.++.+.++                           +        
T Consensus        14 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~---------------------------~--------   53 (116)
T 2cqd_A           14 DTTFTKIFVGGLPYHTTD---ASLRKYFEGF--GDIEEAVVITD---------------------------R--------   53 (116)
T ss_dssp             SCSSSEEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEESCC---------------------------S--------
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeeEEEEEEc---------------------------C--------
Confidence            345689999999998764   7799999876  34555554221                           0        


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC-CCCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE-NPMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~-~p~~~~v~~A  328 (701)
                                                 ...+..+.|||+|.+..+|+.|.+.+... ....+.|+.|
T Consensus        54 ---------------------------~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a   93 (116)
T 2cqd_A           54 ---------------------------QTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA   93 (116)
T ss_dssp             ---------------------------SSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred             ---------------------------CCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence                                       01234689999999999999998865531 2234566666

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.68  E-value=0.058  Score=45.96  Aligned_cols=78  Identities=19%  Similarity=0.228  Sum_probs=54.4

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|++.+ +.+.++.+.+|                                     
T Consensus         7 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~~-G~v~~v~i~~~-------------------------------------   45 (104)
T 2dhg_A            7 GPEYSLFVGDLTPDVDD---GMLYEFFVKVY-PSCRGGKVVLD-------------------------------------   45 (104)
T ss_dssp             SCCCCEEEECCCTTCCH---HHHHHHHHHHC-TTEEEEEEEEC-------------------------------------
T ss_pred             CCCcEEEEeCCCCCCCH---HHHHHHHHHhC-CCeEEEEEEEC-------------------------------------
Confidence            45689999999998754   77999999833 45666665432                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC---CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN---PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~---p~~~~v~~A  328 (701)
                                   +             ..+..+.|||+|.+..+|..|.+.++...   ...+.++.|
T Consensus        46 -------------~-------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a   87 (104)
T 2dhg_A           46 -------------Q-------------TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA   87 (104)
T ss_dssp             -------------T-------------TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred             -------------C-------------CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence                         0             01234799999999999999998766543   234455555

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.67  E-value=0.042  Score=46.77  Aligned_cols=80  Identities=16%  Similarity=0.270  Sum_probs=54.7

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  +.+.++.+.++-                           .        
T Consensus        13 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~---------------------------~--------   52 (103)
T 2cqg_A           13 QKTSDLIVLGLPWKTTE---QDLKEYFSTF--GEVLMVQVKKDL---------------------------K--------   52 (103)
T ss_dssp             CCCCCEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEEECS---------------------------S--------
T ss_pred             CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCeEEEEEEecC---------------------------C--------
Confidence            44679999999998764   7799999887  356666654320                           0        


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCCCceEEeeCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAPE  330 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p~~~~v~~AP~  330 (701)
                                                 ..+..+.|||+|.+..+|..|.+..+.-+...+.++.|-.
T Consensus        53 ---------------------------~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~   92 (103)
T 2cqg_A           53 ---------------------------TGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS   92 (103)
T ss_dssp             ---------------------------SCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred             ---------------------------CCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence                                       0233579999999999999998842222334566766643

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.66  E-value=0.054  Score=46.26  Aligned_cols=81  Identities=17%  Similarity=0.298  Sum_probs=54.9

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++  + +.++.+.++-                                   
T Consensus        12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G-i~~v~i~~~~-----------------------------------   50 (104)
T 1wi8_A           12 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPREP-----------------------------------   50 (104)
T ss_dssp             SSSCEEEEEESCCSSCCH---HHHHHHTTTS--C-EEEEECCBCS-----------------------------------
T ss_pred             CCCCCEEEEeCCCCcCCH---HHHHHHHHHC--C-ceEEEEecCC-----------------------------------
Confidence            345689999999998764   7799999876  3 6555542210                                   


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEP  331 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P  331 (701)
                                   +             ...+..+.|||+|.+..+|..|. .+...  ....+.|+.|-.+
T Consensus        51 -------------~-------------~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~   94 (104)
T 1wi8_A           51 -------------S-------------NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             -------------S-------------CTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred             -------------C-------------CCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence                         0             00234689999999999999999 55543  2344667776433

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=95.66  E-value=0.067  Score=45.19  Aligned_cols=36  Identities=19%  Similarity=0.103  Sum_probs=26.6

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      +..|.|||+|.+..+|+.|.+.+....  ...+.|+.|
T Consensus        61 ~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A   98 (99)
T 2la6_A           61 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA   98 (99)
T ss_dssp             SEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred             CeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence            345899999999999999998766543  234555554

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=95.64  E-value=0.056  Score=46.62  Aligned_cols=78  Identities=18%  Similarity=0.221  Sum_probs=53.9

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++                                     
T Consensus        24 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~-------------------------------------   61 (110)
T 1oo0_B           24 VEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLD-------------------------------------   61 (110)
T ss_dssp             TTBEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEECCBC-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEec-------------------------------------
Confidence            45689999999997654   6799999887  34544443211                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                               ...++..|.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        62 -------------------------~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  103 (110)
T 1oo0_B           62 -------------------------RRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC  103 (110)
T ss_dssp             -------------------------TTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             -------------------------CCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence                                     0013446899999999999999998766542  334556655

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=95.61  E-value=0.048  Score=44.92  Aligned_cols=76  Identities=12%  Similarity=0.094  Sum_probs=52.7

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      +.+||.|.|+|.+..+   +.|+++|+++  |.+.++.+.++.                                     
T Consensus         5 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~-------------------------------------   42 (89)
T 3ucg_A            5 DARSIYVGNVDYGATA---EELEAHFHGC--GSVNRVTILCDK-------------------------------------   42 (89)
T ss_dssp             HHTEEEEESCCTTCCH---HHHHHHHGGG--CCEEEEEEEESC-------------------------------------
T ss_pred             cCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEecC-------------------------------------
Confidence            3579999999998754   7799999986  456666554320                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                               ...+..+.|||+|.+..+|..|. .+....  ...+.++.|
T Consensus        43 -------------------------~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a   82 (89)
T 3ucg_A           43 -------------------------FSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK   82 (89)
T ss_dssp             -------------------------SSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred             -------------------------CCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence                                     01234689999999999999988 554432  234556665

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.58  E-value=0.03  Score=47.73  Aligned_cols=81  Identities=21%  Similarity=0.283  Sum_probs=56.5

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      .+.+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++-                                    
T Consensus         6 ~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~~~------------------------------------   44 (104)
T 1p1t_A            6 RSLRSVFVGNIPYEATE---EQLKDIFSEV--GPVVSFRLVYDR------------------------------------   44 (104)
T ss_dssp             HHHSCEEEESCCTTSCH---HHHHHHHHTT--SCCSEEEEEEET------------------------------------
T ss_pred             CCccEEEEeCCCCcCCH---HHHHHHHHhc--CCeeEEEEEeCC------------------------------------
Confidence            34689999999998654   6799999876  355566553320                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP  331 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P  331 (701)
                                                ...+..|.|||+|.+..+|..|.+.+....  ...+.|+.|-.+
T Consensus        45 --------------------------~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   88 (104)
T 1p1t_A           45 --------------------------ETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE   88 (104)
T ss_dssp             --------------------------TTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred             --------------------------CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence                                      002335799999999999999998766543  345667776443

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.58  E-value=0.039  Score=46.86  Aligned_cols=80  Identities=15%  Similarity=0.171  Sum_probs=54.4

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ..+.++|.|.|||.+..+   +.|+++|+++  +.+.++.+.+|                                    
T Consensus         9 ~~~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~------------------------------------   47 (102)
T 2cqb_A            9 ATTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPLD------------------------------------   47 (102)
T ss_dssp             CCCCSCEEEESCCSSCCH---HHHHHHHTTT--SCCCCEECCCC------------------------------------
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHhhcc--CCEEEEEEEec------------------------------------
Confidence            345689999999998654   7799999876  34444443211                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP  329 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP  329 (701)
                                                ....+..+.|||+|.+..+|..|.+.+...  ....+.|+.|-
T Consensus        48 --------------------------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   90 (102)
T 2cqb_A           48 --------------------------YETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK   90 (102)
T ss_dssp             --------------------------SSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             --------------------------CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence                                      001245689999999999999999876543  23445666663

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=95.58  E-value=0.057  Score=49.86  Aligned_cols=80  Identities=16%  Similarity=0.138  Sum_probs=56.6

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++.  .+.++.+.++-                                    
T Consensus        37 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~~------------------------------------   75 (156)
T 1h2v_Z           37 KKSCTLYVGNLSFYTTE---EQIYELFSKSG--DIKKIIMGLDK------------------------------------   75 (156)
T ss_dssp             TTCCEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEECT------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEecC------------------------------------
Confidence            35689999999997654   77999998874  56666654320                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                                  +              ..+..+.|||+|.+..+|..|.+.+....  ...+.|+.|..
T Consensus        76 ------------~--------------~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  118 (156)
T 1h2v_Z           76 ------------M--------------KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG  118 (156)
T ss_dssp             ------------T--------------TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred             ------------C--------------CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence                        0              02234799999999999999998766542  34566777643

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.57  E-value=0.07  Score=45.97  Aligned_cols=79  Identities=20%  Similarity=0.222  Sum_probs=54.6

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++.  .+.++.+.+|                                     
T Consensus        13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~v~i~~~-------------------------------------   50 (111)
T 1x4h_A           13 TEGKTVFIRNLSFDSEE---EALGEVLQQFG--DLKYVRVVLH-------------------------------------   50 (111)
T ss_dssp             CCCCCEEEESCCTTCCH---HHHHHHHHTTS--CEEEEECCBC-------------------------------------
T ss_pred             CCCCEEEEECCCCCCCH---HHHHHHHHhcC--CeEEEEEEec-------------------------------------
Confidence            34689999999998754   77999998763  4555444221                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhc------cC--CCCceEEeeCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILH------SE--NPMLWVTEMAP  329 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~------~~--~p~~~~v~~AP  329 (701)
                                               ....+..+.|||+|.+..+|..|.+.+.      ..  ....+.|+.|-
T Consensus        51 -------------------------~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~   99 (111)
T 1x4h_A           51 -------------------------PDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV   99 (111)
T ss_dssp             -------------------------SSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred             -------------------------CCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence                                     0012346899999999999999998775      22  23456676663

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.52  E-value=0.085  Score=45.09  Aligned_cols=82  Identities=26%  Similarity=0.343  Sum_probs=56.1

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....++|.|.|||.+..+   +.|+++|+++.  .+.++.+.++.                                   
T Consensus        12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~~-----------------------------------   51 (107)
T 2cph_A           12 KQTTSKILVRNIPFQANQ---REIRELFSTFG--ELKTVRLPKKM-----------------------------------   51 (107)
T ss_dssp             SSCCCCEEEESCCTTCCH---HHHHHHHHTTS--CEEEEECCCCC-----------------------------------
T ss_pred             CCCCCEEEEeCCCCcCCH---HHHHHHHHccC--CeEEEEEecCC-----------------------------------
Confidence            345689999999998754   67999998863  45444432110                                   


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHh-ccC--CCCceEEeeCCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEIL-HSE--NPMLWVTEMAPE  330 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~-~~~--~p~~~~v~~AP~  330 (701)
                                    +            ...+..+.|||+|.+..+|..|.+.+ ...  ....+.|+.|-.
T Consensus        52 --------------~------------~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~   96 (107)
T 2cph_A           52 --------------T------------GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS   96 (107)
T ss_dssp             --------------S------------SSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred             --------------C------------CCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence                          0            01345689999999999999999887 443  234567777643

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.49  E-value=0.064  Score=45.68  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=54.3

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++  + +.++.+.+|-                                   
T Consensus        12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g-i~~v~i~~~~-----------------------------------   50 (103)
T 2dng_A           12 TEPPYTAYVGNLPFNTVQ---GDIDAIFKDL--S-IRSVRLVRDK-----------------------------------   50 (103)
T ss_dssp             SSSCEEEEEESCCTTCCH---HHHHHHTTTS--C-EEEEEEEECS-----------------------------------
T ss_pred             CCCCeEEEEeCCCCCCCH---HHHHHHHHhC--C-ceEEEEeecC-----------------------------------
Confidence            345689999999998764   7799999887  3 6666664320                                   


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP  329 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP  329 (701)
                                                 ...+..+.|||+|.+..+|..|. .+...  ....+.|+.|-
T Consensus        51 ---------------------------~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~   91 (103)
T 2dng_A           51 ---------------------------DTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE   91 (103)
T ss_dssp             ---------------------------SSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred             ---------------------------CCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence                                       00233579999999999999998 44433  22345676664

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=95.47  E-value=0.071  Score=47.18  Aligned_cols=79  Identities=18%  Similarity=0.160  Sum_probs=54.4

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++.  .+.++.+.++                                    
T Consensus        19 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~------------------------------------   57 (126)
T 3ex7_B           19 SVEGWILFVTGVHEEATE---EDIHDKFAEYG--EIKNIHLNLD------------------------------------   57 (126)
T ss_dssp             CSSSEEEEEESCCTTCCH---HHHHHHHHTTS--CEEEEECCBC------------------------------------
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEec------------------------------------
Confidence            345689999999998754   77999998763  4544443211                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                ....+..+.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        58 --------------------------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   99 (126)
T 3ex7_B           58 --------------------------RRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC   99 (126)
T ss_dssp             --------------------------TTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred             --------------------------CCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence                                      0013446899999999999999998776543  334556655

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=95.47  E-value=0.043  Score=45.10  Aligned_cols=38  Identities=13%  Similarity=0.419  Sum_probs=28.5

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH  225 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~  225 (701)
                      ....+||.|.|||.+..+   +.|+++|+++  |.+.++.+.+
T Consensus         8 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~   45 (87)
T 3s7r_A            8 EEDAGKMFVGGLSWDTSK---KDLKDYFTKF--GEVVDCTIKM   45 (87)
T ss_dssp             CSCTTEEEEECCCTTCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEee
Confidence            355689999999998754   7799999876  4566666543

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.45  E-value=0.067  Score=46.26  Aligned_cols=77  Identities=17%  Similarity=0.253  Sum_probs=54.0

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++  |.+.++.+.+|                                    
T Consensus        26 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~------------------------------------   64 (109)
T 2err_A           26 KSQPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFN------------------------------------   64 (109)
T ss_dssp             TTCCCEEEEESCCTTCCH---HHHHHHGGGT--CCCSCEEECCB------------------------------------
T ss_pred             CCCCCEEEEECCCCcCCH---HHHHHHHHhc--CCEEEEEEEEC------------------------------------
Confidence            345689999999998754   7799999886  34555544211                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                   .               .+..|.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        65 -------------~---------------~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  104 (109)
T 2err_A           65 -------------E---------------RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA  104 (109)
T ss_dssp             -------------T---------------TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             -------------C---------------CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence                         0               1235899999999999999998766542  334556665

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=95.45  E-value=0.034  Score=47.35  Aligned_cols=36  Identities=14%  Similarity=0.020  Sum_probs=27.5

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCCC---CceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSENP---MLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~p---~~~~v~~A  328 (701)
                      +..|.|||+|.+..+|+.|.+.+....-   ..+.|..|
T Consensus        52 ~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a   90 (100)
T 3ns6_A           52 KTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM   90 (100)
T ss_dssp             EECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred             ccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence            3468999999999999999987765432   34566665

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=95.44  E-value=0.066  Score=45.85  Aligned_cols=79  Identities=11%  Similarity=0.127  Sum_probs=55.0

Q ss_pred             CCCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCc
Q 039780          182 PNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCF  261 (701)
Q Consensus       182 ~~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~  261 (701)
                      .....++|.|.|||.+..+   +.|+++|+++  +.+.++.+.++                                   
T Consensus        25 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~-----------------------------------   64 (107)
T 3ulh_A           25 GVETGGKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVHYD-----------------------------------   64 (107)
T ss_dssp             CCCCSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC-----------------------------------
T ss_pred             CCCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC-----------------------------------
Confidence            3455789999999998754   6799999876  35555555332                                   


Q ss_pred             cCcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          262 CGAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       262 ~~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                     .             ..+..+.|||+|.+..+|+.|.+.+....  ...+.|+.|
T Consensus        65 ---------------~-------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a  105 (107)
T 3ulh_A           65 ---------------R-------------SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV  105 (107)
T ss_dssp             ---------------T-------------TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             ---------------C-------------CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence                           0             02335799999999999999998766543  233455555

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=95.42  E-value=0.02  Score=52.88  Aligned_cols=36  Identities=8%  Similarity=0.105  Sum_probs=28.7

Q ss_pred             eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780          187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRS  227 (701)
Q Consensus       187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~  227 (701)
                      |||.|.|||.+..+   +.|+++|+++  |.+.++.+.++-
T Consensus         1 R~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~   36 (166)
T 3md3_A            1 RVLYVGNLDKAITE---DILKQYFQVG--GPIANIKIMIDK   36 (166)
T ss_dssp             CEEEEEEEETTCCH---HHHHHHHGGG--SCEEEEEEECCC
T ss_pred             CEEEECCCCCcCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence            69999999998764   7799999987  467778776654

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.41  E-value=0.11  Score=44.72  Aligned_cols=35  Identities=20%  Similarity=0.036  Sum_probs=26.4

Q ss_pred             CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      ..+.|||+|++..+|..|.+.++...  ...+.|+.|
T Consensus        60 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   96 (109)
T 1x4a_A           60 GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP   96 (109)
T ss_dssp             SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence            35799999999999999998766542  334566665

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.40  E-value=0.046  Score=46.02  Aligned_cols=40  Identities=20%  Similarity=0.187  Sum_probs=30.3

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCCC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEPN  332 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P~  332 (701)
                      +..+.|||+|.+..+|+.|.+.+...  ....+.|+.|-.|.
T Consensus        55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   96 (98)
T 2cqp_A           55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS   96 (98)
T ss_dssp             CEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred             CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence            34589999999999999999877654  33456777776553

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.37  E-value=0.074  Score=45.22  Aligned_cols=78  Identities=14%  Similarity=0.221  Sum_probs=54.8

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....+||.|.|||.+..+   +.|+++|+++.  .+.++.+.++                                    
T Consensus        12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~------------------------------------   50 (103)
T 2d9p_A           12 RYQVVNLYVKNLDDGIDD---ERLRKAFSPFG--TITSAKVMME------------------------------------   50 (103)
T ss_dssp             CSSCCCEEEECCCTTCCH---HHHHHTTTTTS--CEEEEEEEEC------------------------------------
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEEEcC------------------------------------
Confidence            345689999999998764   67899998753  4545444211                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                                                  ..+..+.|||+|.+..+|..|.+.++...  ...+.|+.|-
T Consensus        51 ----------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   91 (103)
T 2d9p_A           51 ----------------------------GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ   91 (103)
T ss_dssp             ----------------------------SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred             ----------------------------CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence                                        02335799999999999999998766543  3456677663

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=95.35  E-value=0.058  Score=49.65  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=29.8

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRS  227 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~  227 (701)
                      +.+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++-
T Consensus         1 s~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~~~~~~   38 (167)
T 1fxl_A            1 SKTNLIVNYLPQNMTQ---EEFRSLFGSI--GEIESCKLVRDK   38 (167)
T ss_dssp             CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECT
T ss_pred             CcceEEEcCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeCC
Confidence            3579999999998754   7799999986  457777777653

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=95.34  E-value=0.046  Score=47.83  Aligned_cols=68  Identities=16%  Similarity=0.285  Sum_probs=49.1

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      +..+||.|.|||.+..+   +.|+++|+++  |.+.++.+.+|                                     
T Consensus        38 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~-------------------------------------   75 (118)
T 2khc_A           38 PEGCNLFIYHLPQEFTD---TDLASTFLPF--GNVISAKVFID-------------------------------------   75 (118)
T ss_dssp             CCSEEEEEECSCTTCCH---HHHHHHTTTS--CEEEEEEECCC-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEeC-------------------------------------
Confidence            45689999999998754   7799999876  34555544211                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                                  .             ...+..+.|||+|.+..+|..|.+.++..
T Consensus        76 ------------~-------------~~g~~~g~afV~f~~~~~A~~A~~~l~g~  105 (118)
T 2khc_A           76 ------------K-------------QTSLSKCFGFVSFDNPDSAQVAIKAMNGF  105 (118)
T ss_dssp             ------------S-------------SSSCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred             ------------C-------------CCCCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence                        0             01345689999999999999999876554

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=95.34  E-value=0.12  Score=45.62  Aligned_cols=78  Identities=13%  Similarity=0.170  Sum_probs=54.9

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++                                     
T Consensus        33 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~-------------------------------------   70 (124)
T 2kt5_A           33 ETGAKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVDYD-------------------------------------   70 (124)
T ss_dssp             SSCEEEEEESCCSSCCH---HHHHHHHHTT--SCCSEEEEECC-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEC-------------------------------------
Confidence            34579999999997654   6799999876  35555555321                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP  329 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP  329 (701)
                                   +             ..+..|.|||+|.+..+|..|.+.+...  +...+.|+.|.
T Consensus        71 -------------~-------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  112 (124)
T 2kt5_A           71 -------------R-------------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA  112 (124)
T ss_dssp             -------------S-------------SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred             -------------C-------------CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence                         0             0234689999999999999999876543  23456666664

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.32  E-value=0.11  Score=43.78  Aligned_cols=37  Identities=19%  Similarity=0.140  Sum_probs=28.3

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP  331 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P  331 (701)
                      .+.|||+|++..+|..|.+.++...  ...+.|+.|-.+
T Consensus        51 kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   89 (99)
T 2cpj_A           51 KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS   89 (99)
T ss_dssp             TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence            3799999999999999998776543  345677777443

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.31  E-value=0.079  Score=43.89  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=53.0

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....++|.|.|||.+..+   +.|+++|+++   .+.++.+.++                                    
T Consensus         7 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~---~i~~v~i~~~------------------------------------   44 (91)
T 2dgw_A            7 GTTCHTVKLRGAPFNVTE---KNVMEFLAPL---KPVAIRIVRN------------------------------------   44 (91)
T ss_dssp             CCCCCEEEEECCCSSCCH---HHHHHHHTTS---CCSEEEEEEC------------------------------------
T ss_pred             CCCccEEEEECCCCCCCH---HHHHHHHhhC---CceEEEEEEC------------------------------------
Confidence            345689999999998754   6799999876   3555555321                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                 ...+..|.|||+|.+..+|+.|.+ +....  ...+.|..|
T Consensus        45 ---------------------------~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a   84 (91)
T 2dgw_A           45 ---------------------------AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE   84 (91)
T ss_dssp             ---------------------------TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred             ---------------------------CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence                                       002345899999999999999998 55432  334556665

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=95.29  E-value=0.063  Score=48.34  Aligned_cols=68  Identities=16%  Similarity=0.219  Sum_probs=48.5

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++.  .+.++.+.++                                     
T Consensus        61 ~~~~~l~v~nlp~~~~~---~~l~~~f~~~G--~i~~v~i~~~-------------------------------------   98 (140)
T 2ku7_A           61 TTKRVLYVGGLAEEVDD---KVLHAAFIPFG--DITDIQIPLD-------------------------------------   98 (140)
T ss_dssp             SSCCEEEEECCCTTCCH---HHHHHHHGGGS--CEEEEECCCC-------------------------------------
T ss_pred             CCCcEEEEEeCCCCCCH---HHHHHHHHhcC--CEEEEEEeec-------------------------------------
Confidence            34689999999998654   77999998863  4444443211                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                                               ....+..|.|||+|.+..+|..|.+.+...
T Consensus        99 -------------------------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~  128 (140)
T 2ku7_A           99 -------------------------YETEKHRGFAFVEFELAEDAAAAIDNMNES  128 (140)
T ss_dssp             -------------------------TTTCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred             -------------------------CCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence                                     001345689999999999999999876543

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=95.23  E-value=0.11  Score=45.03  Aligned_cols=76  Identities=17%  Similarity=0.237  Sum_probs=54.0

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+.+  |.+.++.+.++                                     
T Consensus         6 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~-------------------------------------   43 (115)
T 3lqv_A            6 EVNRILYIRNLPYKITA---EEMYDIFGKY--GPIRQIRVGNT-------------------------------------   43 (115)
T ss_dssp             TCCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEECS-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeC-------------------------------------
Confidence            34579999999997754   6799999876  34555554211                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                                                  .+..|.|||+|.+..+|..|.+.++...  ...+.++.|-
T Consensus        44 ----------------------------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   83 (115)
T 3lqv_A           44 ----------------------------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN   83 (115)
T ss_dssp             ----------------------------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred             ----------------------------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence                                        1125799999999999999999776553  3456677664

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.23  E-value=0.07  Score=44.86  Aligned_cols=81  Identities=15%  Similarity=0.183  Sum_probs=54.9

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  +.+.++.+.++-.                                   
T Consensus         3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~-----------------------------------   42 (98)
T 2cpf_A            3 SGSSGLFIKNLNFSTTE---ETLKGVFSKV--GAIKSCTISKKKN-----------------------------------   42 (98)
T ss_dssp             CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEEEC-----------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-----------------------------------
Confidence            34689999999998754   7799999876  3566666543210                                   


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                              +....+..+.|||+|.+..+|..|.+.++...  ...+.|+.|
T Consensus        43 ------------------------~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   85 (98)
T 2cpf_A           43 ------------------------KAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS   85 (98)
T ss_dssp             ------------------------TTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred             ------------------------CCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence                                    00002345799999999999999999766542  234556555

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.16  E-value=0.11  Score=44.89  Aligned_cols=37  Identities=19%  Similarity=0.147  Sum_probs=27.9

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      .+..+.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        62 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  100 (113)
T 2cpe_A           62 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA  100 (113)
T ss_dssp             CSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred             CCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence            3557899999999999999998766542  334566665

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.16  E-value=0.06  Score=46.24  Aligned_cols=37  Identities=19%  Similarity=0.307  Sum_probs=28.6

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV  224 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~  224 (701)
                      ....+||.|.|+|.+..+   +.|+++|+++  |.+.++.+.
T Consensus         8 ~~~~~~lfV~~Lp~~~te---~~L~~~F~~~--G~v~~v~i~   44 (103)
T 1s79_A            8 DVKNRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMR   44 (103)
T ss_dssp             CSGGGCEEEECCCTTCCH---HHHHHHHHTS--SCEEEEEEE
T ss_pred             cCCCCEEEEECCCCCCCH---HHHHHHHhhc--CCEEEEEEE
Confidence            355689999999998764   7799999986  456666664

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=95.15  E-value=0.046  Score=45.20  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=29.4

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCCC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEPN  332 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P~  332 (701)
                      .|.|||+|.+..+|..|.+.++..  ....+.++.||...
T Consensus        40 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   79 (88)
T 1wg1_A           40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA   79 (88)
T ss_dssp             GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             CcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence            479999999999999999977654  34456788887643

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.10  E-value=0.15  Score=42.75  Aligned_cols=33  Identities=21%  Similarity=0.136  Sum_probs=25.6

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                      +.|||+|.+..+|+.|.+.+...  ....+.|+.|
T Consensus        53 g~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a   87 (96)
T 2dgx_A           53 LKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA   87 (96)
T ss_dssp             CCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence            57999999999999999876654  2345667766

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=95.07  E-value=0.092  Score=47.02  Aligned_cols=78  Identities=17%  Similarity=0.185  Sum_probs=55.1

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...++|.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-                                    
T Consensus        44 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~------------------------------------   82 (129)
T 2kxn_B           44 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYDQ------------------------------------   82 (129)
T ss_dssp             CCSSCBCEETCTTSCCH---HHHHHHHTTT--SCEEEEEEECCS------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC------------------------------------
Confidence            34689999999998764   6799999876  355565553220                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                ...+..+.|||+|++..+|..|.+.+....  ...+.|+.|
T Consensus        83 --------------------------~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a  123 (129)
T 2kxn_B           83 --------------------------QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS  123 (129)
T ss_dssp             --------------------------SSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred             --------------------------CCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence                                      012346899999999999999998776543  234566665

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.02  E-value=0.068  Score=42.62  Aligned_cols=24  Identities=13%  Similarity=0.149  Sum_probs=20.6

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhc
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILH  316 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~  316 (701)
                      +..|.|||+|++..+|..|.+...
T Consensus        40 ~~~g~afV~f~~~~~a~~a~~~~~   63 (77)
T 1uaw_A           40 RSRGFGFVTFMDQAGVDKVLAQSR   63 (77)
T ss_dssp             SCSSEEEECCCCTTHHHHHHHTTT
T ss_pred             CcCceEEEEEcCHHHHHHHHHhCC
Confidence            456899999999999999998665

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=95.00  E-value=0.012  Score=57.73  Aligned_cols=37  Identities=14%  Similarity=0.041  Sum_probs=30.5

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRS  227 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~  227 (701)
                      .+||.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-
T Consensus        15 ~~tlfVgnLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~   51 (213)
T 4f02_A           15 MASLYVGDLHPDVTE---AMLYEKFSPA--GPILSIRVCRDM   51 (213)
T ss_dssp             CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred             CcEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEeccc
Confidence            479999999998764   7899999987  568888888763

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.99  E-value=0.21  Score=41.13  Aligned_cols=34  Identities=24%  Similarity=0.150  Sum_probs=25.9

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP  329 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP  329 (701)
                      +.|||+|.+..+|..|.+.++..  +...+.|+.|-
T Consensus        43 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   78 (90)
T 2dnq_A           43 NYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK   78 (90)
T ss_dssp             TEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred             CEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence            58999999999999999876654  23456676663

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.90  E-value=0.074  Score=43.41  Aligned_cols=67  Identities=18%  Similarity=0.228  Sum_probs=48.3

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ..+||.|.|||.+..+   +.|+++|+++  +.+.++.+.++-                                     
T Consensus         4 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~-------------------------------------   41 (85)
T 1x4e_A            4 GSSGLYIRGLQPGTTD---QDLVKLCQPY--GKIVSTKAILDK-------------------------------------   41 (85)
T ss_dssp             CCCEEEEESCCTTCCH---HHHHTTSTTT--SCEEEEEEECCS-------------------------------------
T ss_pred             CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC-------------------------------------
Confidence            4579999999998764   6788888876  355555543210                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                                               ...+..|.|||+|.+..+|..|.+.++..
T Consensus        42 -------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~   70 (85)
T 1x4e_A           42 -------------------------TTNKCKGYGFVDFDSPSAAQKAVTALKAS   70 (85)
T ss_dssp             -------------------------SSCSCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             -------------------------CCCCcCcEEEEEECCHHHHHHHHHHhcCC
Confidence                                     01234689999999999999999876544

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=94.88  E-value=0.15  Score=43.57  Aligned_cols=33  Identities=15%  Similarity=0.058  Sum_probs=25.0

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCC----CCceEEeeC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSEN----PMLWVTEMA  328 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~----p~~~~v~~A  328 (701)
                      |.|||+|.+..+|..|.+.+....    ...+.|+.|
T Consensus        58 g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S   94 (100)
T 3r27_A           58 RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS   94 (100)
T ss_dssp             TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred             CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence            689999999999999998766543    334556655

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.86  E-value=0.14  Score=44.28  Aligned_cols=77  Identities=17%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  +.+.++.+.++                                     
T Consensus        13 ~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~~-------------------------------------   50 (114)
T 2do0_A           13 RLGSTVFVANLDYKVGW---KKLKEVFSMA--GVVVRADILED-------------------------------------   50 (114)
T ss_dssp             CCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC-------------------------------------
Confidence            44689999999998754   7799999876  35555554322                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                  +              ..+..+.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        51 ------------~--------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   91 (114)
T 2do0_A           51 ------------K--------------DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD   91 (114)
T ss_dssp             ------------T--------------TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ------------C--------------CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence                        0              01234799999999999999998766542  233455554

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=94.84  E-value=0.056  Score=45.16  Aligned_cols=36  Identities=19%  Similarity=0.080  Sum_probs=25.9

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      +..+.|||+|.+..+|..|.+.++...  ...+.|+.|
T Consensus        55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a   92 (95)
T 2ek1_A           55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP   92 (95)
T ss_dssp             CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence            345899999999999999998766542  233445544

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=94.78  E-value=0.045  Score=45.31  Aligned_cols=37  Identities=16%  Similarity=0.075  Sum_probs=25.7

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                      +..|.|||+|++.. |..|.+.+....  ...+.|+.|..
T Consensus        41 ~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~   79 (90)
T 2ki2_A           41 KPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP   79 (90)
T ss_dssp             CCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred             CcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence            34689999999999 998888766543  33455666643

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.78  E-value=0.22  Score=41.93  Aligned_cols=33  Identities=30%  Similarity=0.310  Sum_probs=25.4

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                      +.|||+|++..+|..|.+.++..  ....+.|+.|
T Consensus        52 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   86 (99)
T 2cpd_A           52 DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA   86 (99)
T ss_dssp             SEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred             CeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence            59999999999999999876654  2345666665

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.74  E-value=0.17  Score=43.78  Aligned_cols=67  Identities=7%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ....||.|.|||.+..+   +.|+++|+++  +.+.++.+.+|                                     
T Consensus        23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~-------------------------------------   60 (114)
T 1x5o_A           23 QDPTNLYISNLPLSMDE---QELENMLKPF--GQVISTRILRD-------------------------------------   60 (114)
T ss_dssp             CCTTEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEEEC-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC-------------------------------------
Confidence            45679999999998754   6799999876  34555555322                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                                   .             ..+..+.|||+|.+..+|+.|.+.+...
T Consensus        61 -------------~-------------~g~~~g~afV~f~~~~~a~~A~~~l~g~   89 (114)
T 1x5o_A           61 -------------S-------------SGTSRGVGFARMESTEKCEAVIGHFNGK   89 (114)
T ss_dssp             -------------S-------------SSCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred             -------------C-------------CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence                         0             0223479999999999999999976654

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=94.69  E-value=0.15  Score=45.86  Aligned_cols=77  Identities=18%  Similarity=0.218  Sum_probs=54.8

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ..+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++-                                     
T Consensus        41 ~~~~l~V~nLp~~~~~---~~l~~~F~~~--G~i~~v~i~~~~-------------------------------------   78 (139)
T 1u6f_A           41 VLRNLMVNYIPTTVDE---VQLRQLFERY--GPIESVKIVCDR-------------------------------------   78 (139)
T ss_dssp             TTSEEEEESCSTTCCH---HHHHHHHHHH--SCEEEEEEEEET-------------------------------------
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC-------------------------------------
Confidence            3579999999998764   6799999987  456666654320                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                                               ...+..+.|||+|.+..+|..|.+.+...  ....+.|+.|
T Consensus        79 -------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a  119 (139)
T 1u6f_A           79 -------------------------ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA  119 (139)
T ss_dssp             -------------------------TTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred             -------------------------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence                                     00233579999999999999999876653  2345666665

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.66  E-value=0.21  Score=41.66  Aligned_cols=34  Identities=15%  Similarity=0.151  Sum_probs=26.5

Q ss_pred             EEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780          298 AFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP  331 (701)
Q Consensus       298 aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P  331 (701)
                      |||+|.+..+|..|.+.+....  ...+.|+.|.+.
T Consensus        57 afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   92 (96)
T 2e44_A           57 VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE   92 (96)
T ss_dssp             EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred             EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence            9999999999999998766543  345678887544

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=94.56  E-value=0.093  Score=45.37  Aligned_cols=78  Identities=15%  Similarity=0.277  Sum_probs=51.8

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  |.+.++.+.+|                                     
T Consensus        23 ~~~~~lfV~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~~-------------------------------------   60 (109)
T 2rs2_A           23 SSGCKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVMRD-------------------------------------   60 (109)
T ss_dssp             ---CCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECCC-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHcc--CCeEEEEEEEC-------------------------------------
Confidence            44689999999998764   6799999876  45555555321                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC-CCCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE-NPMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~-~p~~~~v~~A  328 (701)
                                               ...++..|.|||+|.+..+|..|.+..... +...+.++.|
T Consensus        61 -------------------------~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a  101 (109)
T 2rs2_A           61 -------------------------PLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA  101 (109)
T ss_dssp             -------------------------TTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred             -------------------------CCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence                                     001344689999999999999998864311 2334556665

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.55  E-value=0.14  Score=43.38  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=27.8

Q ss_pred             CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                      ..+.|||+|.+..+|..|.+.+....  ...+.|+.|-.
T Consensus        53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   91 (102)
T 2fc8_A           53 SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP   91 (102)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             cCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence            35799999999999999998766543  34566777643

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.55  E-value=0.11  Score=44.96  Aligned_cols=35  Identities=26%  Similarity=0.109  Sum_probs=27.1

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                      +.|||+|.+..+|+.|.+.++...  ...+.|+.|+.
T Consensus        47 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   83 (111)
T 1whx_A           47 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             CEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            579999999999999998876553  34566777753

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.53  E-value=0.25  Score=42.39  Aligned_cols=34  Identities=12%  Similarity=-0.038  Sum_probs=25.3

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC----CCCceEEeeCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE----NPMLWVTEMAP  329 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~----~p~~~~v~~AP  329 (701)
                      +.|||+|++..+|..|.+.+...    +...+.++.|-
T Consensus        52 g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~   89 (104)
T 1wex_A           52 RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST   89 (104)
T ss_dssp             TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred             CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence            68999999999999998865432    23456666663

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=94.52  E-value=0.13  Score=47.69  Aligned_cols=79  Identities=11%  Similarity=0.065  Sum_probs=55.2

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ..++|.|.|||.+..+   +.|+++|+++.+..+.++.+++|-                                     
T Consensus        54 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~d~-------------------------------------   93 (156)
T 3n9u_C           54 RRAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAENR-------------------------------------   93 (156)
T ss_dssp             --CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEECT-------------------------------------
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEecC-------------------------------------
Confidence            4589999999998764   779999988743266676665430                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                               ..++..|.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        94 -------------------------~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a  134 (156)
T 3n9u_C           94 -------------------------ANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA  134 (156)
T ss_dssp             -------------------------TTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred             -------------------------CCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence                                     002345899999999999999999876543  234556655

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=94.51  E-value=0.09  Score=41.70  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=18.3

Q ss_pred             cCCceEEEEeCCHHHHHHHHH
Q 039780          293 KENAVAFVCFKTRYAAVVAAE  313 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q  313 (701)
                      +..|.|||+|++..+|+.|.+
T Consensus        39 ~~~g~afV~f~~~~~a~~a~~   59 (75)
T 2mss_A           39 RHRGFGFVTFESEDIVEKVCE   59 (75)
T ss_dssp             TSCBEEEEECSCHHHHHHHHS
T ss_pred             CcCcEEEEEECCHHHHHHHHH
Confidence            456899999999999998876

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=94.44  E-value=0.15  Score=48.43  Aligned_cols=83  Identities=13%  Similarity=0.163  Sum_probs=58.0

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ....||.|.|||.+..+   +.|+++|+++  +.+.++.+.++                                     
T Consensus        86 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d-------------------------------------  123 (177)
T 2f3j_A           86 ETGAKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVDYD-------------------------------------  123 (177)
T ss_dssp             TTCEEEEEECCCSCCCH---HHHHHHHHHT--SCCSEEEECCC-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC-------------------------------------
Confidence            34589999999998754   6799999886  34555555221                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCe
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDV  334 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DI  334 (701)
                                   .             ..+..+.|||+|.+..+|..|.+.+....  ...+.|+.|..+...
T Consensus       124 -------------~-------------~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~  170 (177)
T 2f3j_A          124 -------------R-------------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL  170 (177)
T ss_dssp             -------------T-------------TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGG
T ss_pred             -------------C-------------CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence                         0             02346899999999999999998766542  345677777654433

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.43  E-value=0.28  Score=41.08  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=26.5

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCC----CCceEEeeC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSEN----PMLWVTEMA  328 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~----p~~~~v~~A  328 (701)
                      .+.|||+|.+..+|+.|.+.++...    ...+.|+.|
T Consensus        53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a   90 (97)
T 1why_A           53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA   90 (97)
T ss_dssp             SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred             CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence            3699999999999999998766542    345677776

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.39  E-value=0.29  Score=40.31  Aligned_cols=33  Identities=21%  Similarity=0.181  Sum_probs=25.3

Q ss_pred             eEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780          297 VAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP  329 (701)
Q Consensus       297 ~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP  329 (701)
                      .|||+|.+..+|..|.+.+...  +...+.|+.|-
T Consensus        45 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   79 (90)
T 2dnp_A           45 YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST   79 (90)
T ss_dssp             CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence            8999999999999999876654  23456666663

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=94.39  E-value=0.11  Score=43.42  Aligned_cols=40  Identities=23%  Similarity=0.178  Sum_probs=30.1

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCe
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDV  334 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DI  334 (701)
                      .|.|||+|.+..+|..|.+.++...  ...+.++.|-.+.+.
T Consensus        51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~   92 (97)
T 1nu4_A           51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI   92 (97)
T ss_dssp             TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred             CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence            4799999999999999998776543  345677777555543

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.36  E-value=0.21  Score=42.91  Aligned_cols=33  Identities=12%  Similarity=0.058  Sum_probs=25.6

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCCC-------CceEEeeC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSENP-------MLWVTEMA  328 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~p-------~~~~v~~A  328 (701)
                      +.|||+|.+..+|+.|.+.+....-       ..+.|+.|
T Consensus        51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a   90 (108)
T 1x4c_A           51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD   90 (108)
T ss_dssp             TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred             CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence            7999999999999999997664321       34667776

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=94.36  E-value=0.11  Score=46.83  Aligned_cols=77  Identities=17%  Similarity=0.187  Sum_probs=53.4

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ..+||.|.|||.+..+   +.|+++|+++.  .+.++.+.++                                      
T Consensus        46 ~~~~l~V~nLp~~~te---~~L~~~F~~~G--~i~~v~i~~~--------------------------------------   82 (135)
T 2lea_A           46 GMTSLKVDNLTYRTSP---DTLRRVFEKYG--RVGDVYIPRD--------------------------------------   82 (135)
T ss_dssp             GCCCEEEECCCSSCHH---HHHHHHHGGGS--CCSEEECCCC--------------------------------------
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEEEec--------------------------------------
Confidence            4579999999998754   77999998863  4545443211                                      


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                              ....+..|.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        83 ------------------------~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a  124 (135)
T 2lea_A           83 ------------------------RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA  124 (135)
T ss_dssp             ------------------------SSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred             ------------------------CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence                                    0012456899999999999999998766543  234566665

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=94.33  E-value=0.068  Score=42.42  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=19.1

Q ss_pred             cCCceEEEEeCCHHHHHHHHHH
Q 039780          293 KENAVAFVCFKTRYAAVVAAEI  314 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~  314 (701)
                      +..|.|||+|++..+|..|.+.
T Consensus        39 ~~~g~afV~f~~~~~a~~Ai~~   60 (75)
T 1iqt_A           39 KRRGFCFITFKEEEPVKKIMEK   60 (75)
T ss_dssp             SSCCCEEEECSSSHHHHHHHTT
T ss_pred             CcCCEEEEEECCHHHHHHHHHh
Confidence            4568999999999999999874

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.29  E-value=0.094  Score=44.72  Aligned_cols=37  Identities=19%  Similarity=0.449  Sum_probs=27.9

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV  224 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~  224 (701)
                      ....++|.|.|||.+..+   +.|+++|+++  +.+.++.+.
T Consensus        13 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~   49 (105)
T 2dh8_A           13 ADEIGKLFVGGLDWSTTQ---ETLRSYFSQY--GEVVDCVIM   49 (105)
T ss_dssp             SSSSSEECCBSCCTTCCH---HHHHHHHHTT--SCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEe
Confidence            345689999999998754   7799999886  456666654

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.29  E-value=0.21  Score=42.75  Aligned_cols=36  Identities=25%  Similarity=0.206  Sum_probs=26.9

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhc--cC--CCCceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILH--SE--NPMLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~--~~--~p~~~~v~~A  328 (701)
                      +..|.|||+|.+..+|..|.+.++  ..  ....+.|+.|
T Consensus        50 ~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a   89 (109)
T 2dis_A           50 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA   89 (109)
T ss_dssp             TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred             CcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence            456899999999999999998764  22  2345667666

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=94.23  E-value=0.21  Score=46.61  Aligned_cols=78  Identities=18%  Similarity=0.230  Sum_probs=54.2

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|.++  |.+.++.+..+-                                    
T Consensus        70 ~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~~~~------------------------------------  108 (165)
T 1rk8_A           70 VEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLDR------------------------------------  108 (165)
T ss_dssp             C-CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHhhcC--CCEEEEEEEecC------------------------------------
Confidence            45679999999997654   7799999987  456666654320                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                ...+..|.|||+|.+..+|..|.+.+....  ...+.|..|
T Consensus       109 --------------------------~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  149 (165)
T 1rk8_A          109 --------------------------RTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC  149 (165)
T ss_dssp             --------------------------TTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             --------------------------CCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence                                      002335799999999999999998766542  234455554

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=94.14  E-value=0.2  Score=46.08  Aligned_cols=78  Identities=17%  Similarity=0.193  Sum_probs=54.2

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...++|.|.|||.+..+   +.|+++|+.+.  .+.++.+.+|                                     
T Consensus        68 ~~~~~l~v~nl~~~~~~---~~l~~~F~~~G--~v~~~~i~~~-------------------------------------  105 (158)
T 2kn4_A           68 EGMTSLKVDNLTYRTSP---DTLRRVFEKYG--RVGDVYIPRD-------------------------------------  105 (158)
T ss_dssp             CBCCEEEEESCCTTCCH---HHHHHHHHHHS--CEEEEECCCC-------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEeec-------------------------------------
Confidence            34689999999998754   77999998873  4555444211                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                   .            ...+..|.|||+|.+..+|..|.+.++...  ...+.|+.|
T Consensus       106 -------------~------------~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a  147 (158)
T 2kn4_A          106 -------------R------------YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA  147 (158)
T ss_dssp             -------------S------------SCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred             -------------C------------CCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence                         0            012356899999999999999998766542  344566665

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.10  E-value=0.11  Score=45.17  Aligned_cols=33  Identities=27%  Similarity=0.489  Sum_probs=25.3

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHM  223 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i  223 (701)
                      ..++|.|.|||.+..+   +.|+++|+.+   .+.++.+
T Consensus        15 ~~~~v~V~nLp~~~te---~dl~~~F~~~---~v~~v~i   47 (109)
T 2dnn_A           15 DDLYVSVHGMPFSAME---NDVRDFFHGL---RVDAVHL   47 (109)
T ss_dssp             HHHEEEEECCCSSCCH---HHHHHHTTTS---CCCEEEE
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHhccC---CeeEEEE
Confidence            4579999999998764   7799999876   3455555

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.06  E-value=0.35  Score=41.42  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=26.4

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                      .+.|||+|.+..+|..|.+.+....  ...+.|+.|-
T Consensus        61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   97 (109)
T 1x4g_A           61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK   97 (109)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence            4799999999999999998776542  3345666664

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=94.00  E-value=0.31  Score=41.61  Aligned_cols=38  Identities=13%  Similarity=0.146  Sum_probs=29.1

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC--CCC-ceEEeeCCC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE--NPM-LWVTEMAPE  330 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~-~~~v~~AP~  330 (701)
                      +..|.|||+|.+..+|+.|.+.+...  ... .+.|+.|-+
T Consensus        59 ~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~   99 (105)
T 2nlw_A           59 KTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD   99 (105)
T ss_dssp             BSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred             CeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence            45689999999999999999976654  233 567777754

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=93.94  E-value=0.34  Score=41.08  Aligned_cols=35  Identities=26%  Similarity=0.220  Sum_probs=25.9

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPE  330 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~  330 (701)
                      +.|||+|.+..+|..|.+.++..  +...+.|+.|-.
T Consensus        46 ~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   82 (103)
T 2dgu_A           46 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP   82 (103)
T ss_dssp             SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence            38999999999999999876654  234566666643

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.91  E-value=0.2  Score=43.71  Aligned_cols=40  Identities=13%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC----CCCceEEeeCCCCCCee
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE----NPMLWVTEMAPEPNDVL  335 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~----~p~~~~v~~AP~P~DIi  335 (701)
                      +.|||+|.+..+|..|.+.+...    ....+.|+.|-...++.
T Consensus        63 g~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~  106 (112)
T 1x4f_A           63 SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV  106 (112)
T ss_dssp             TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred             CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence            68999999999999999866432    33456777776555544

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=93.91  E-value=0.11  Score=43.89  Aligned_cols=78  Identities=18%  Similarity=0.282  Sum_probs=50.8

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  | +.++.+.++                                     
T Consensus        17 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G-i~~v~i~~~-------------------------------------   53 (100)
T 2j76_E           17 SPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPRE-------------------------------------   53 (100)
T ss_dssp             ---CEEEESCCSSCCSS---SHHHHHSCSS--C-EEEEECSCC-------------------------------------
T ss_pred             CCCcEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEEEec-------------------------------------
Confidence            45689999999998764   5688899875  3 555554211                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                                  .            ...++..|.|||+|.+..+|..|. .+....  ...+.|+.|-
T Consensus        54 ------------~------------~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~   96 (100)
T 2j76_E           54 ------------P------------SNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD   96 (100)
T ss_dssp             ------------T------------TTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred             ------------C------------CcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence                        0            001345689999999999999999 555432  2345566653

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.88  E-value=0.12  Score=44.97  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=25.7

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCc-ceEEE
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSY-LSHHM  223 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v-~~v~i  223 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  +.+ .++.+
T Consensus        13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g~v~~~v~i   48 (114)
T 2cpy_A           13 SAKVCAHITNIPFSITK---MDVLQFLEGI--PVDENAVHV   48 (114)
T ss_dssp             SCCCEEEEESCCTTSCH---HHHHHHTTTS--CCCSTTEEE
T ss_pred             CCccEEEEeCcCCcCCH---HHHHHHHHhC--CCcCCeEEE
Confidence            45689999999998764   6799999876  344 34444

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.88  E-value=0.2  Score=43.56  Aligned_cols=75  Identities=11%  Similarity=0.253  Sum_probs=51.6

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP  265 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~  265 (701)
                      .++|.|.|||.+..+   +.|+++|+++  +.+.++.+.+|-                                      
T Consensus        27 ~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~--------------------------------------   63 (116)
T 1x4b_A           27 FRKLFIGGLSFETTE---ESLRNYYEQW--GKLTDCVVMRDP--------------------------------------   63 (116)
T ss_dssp             HTEEEEECCTTCCCH---HHHHHHHTSS--CCCSEEEEECCT--------------------------------------
T ss_pred             CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEECC--------------------------------------
Confidence            479999999998764   7799999876  355566553220                                      


Q ss_pred             hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                                              ...+..|.|||+|.+..+|..|.+. ...  ....+.|+.|
T Consensus        64 ------------------------~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a  103 (116)
T 1x4b_A           64 ------------------------ASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA  103 (116)
T ss_dssp             ------------------------TTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred             ------------------------CCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence                                    0123468999999999999999875 222  2234566665

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=93.87  E-value=0.15  Score=44.83  Aligned_cols=76  Identities=12%  Similarity=0.111  Sum_probs=52.7

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP  265 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~  265 (701)
                      .+||.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-                                      
T Consensus        36 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~--------------------------------------   72 (124)
T 2jwn_A           36 KRSVYVGNVDYGSTA---QDLEAHFSSC--GSINRITILCDK--------------------------------------   72 (124)
T ss_dssp             HTEEEEEEECTTCCH---HHHHHHHHTT--SCEEEEEEEEEC--------------------------------------
T ss_pred             CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecC--------------------------------------
Confidence            579999999998654   7799999976  456666654320                                      


Q ss_pred             hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780          266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP  329 (701)
Q Consensus       266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP  329 (701)
                                              ...+..|.|||+|.+..+|..|. .+...  ....+.|+.|-
T Consensus        73 ------------------------~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~  113 (124)
T 2jwn_A           73 ------------------------FSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR  113 (124)
T ss_dssp             ------------------------TTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred             ------------------------CCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence                                    00234589999999999999998 44433  23345676663

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=93.85  E-value=0.14  Score=46.32  Aligned_cols=78  Identities=19%  Similarity=0.263  Sum_probs=52.8

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCC-CcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAP-SYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~-~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ...++|.|.|||.+..+   +.|+++|+++... .+.++.+++|-                                   
T Consensus        42 ~~~~~lfVgnLp~~~te---~dL~~~F~~~G~v~~v~~v~i~~d~-----------------------------------   83 (136)
T 2hgl_A           42 GEGFVVKLRGLPWSCSV---EDVQNFLSDCTIHDGAAGVHFIYTR-----------------------------------   83 (136)
T ss_dssp             CTTCEEEEESCCTTCCH---HHHHHHTTTCCCSSSSTTEEEEECS-----------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcCceeEEEEEECC-----------------------------------
Confidence            34689999999998764   7799999886321 14455554320                                   


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                                                 . .+..|.|||+|++..+|..|.+ +...  ......|..|
T Consensus        84 ---------------------------~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a  122 (136)
T 2hgl_A           84 ---------------------------E-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS  122 (136)
T ss_dssp             ---------------------------S-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred             ---------------------------C-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence                                       0 2345899999999999999988 4433  2234556555

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.80  E-value=0.18  Score=42.96  Aligned_cols=43  Identities=23%  Similarity=0.141  Sum_probs=28.8

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCeeec
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDVLWS  337 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DIiW~  337 (701)
                      +..|.|||+|.+..+|+.|.+. ....  .....|..| .+.++.|.
T Consensus        55 ~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~~   99 (104)
T 1wg5_A           55 RSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRTS   99 (104)
T ss_dssp             CBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCCS
T ss_pred             CcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHHh
Confidence            4568999999999999999886 3322  223455555 34555443

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.79  E-value=0.1  Score=45.29  Aligned_cols=33  Identities=12%  Similarity=0.145  Sum_probs=25.3

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHM  223 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i  223 (701)
                      .+||.|.|||.+..+   +.|+++|+++  |.+.++.+
T Consensus        25 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i   57 (114)
T 2cq4_A           25 ARTVFCMQLAARIRP---RDLEDFFSAV--GKVRDVRI   57 (114)
T ss_dssp             HTEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEE
T ss_pred             CCEEEEeCCCCCCCH---HHHHHHHHhC--CCEeEEEE
Confidence            479999999998754   6799999876  35555554

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.77  E-value=0.69  Score=38.58  Aligned_cols=38  Identities=18%  Similarity=0.130  Sum_probs=28.9

Q ss_pred             CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780          294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP  331 (701)
Q Consensus       294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P  331 (701)
                      ..+.|||+|.+..+|+.|.+.+....  ...+.|+.|-.+
T Consensus        55 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   94 (97)
T 2e5j_A           55 PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ   94 (97)
T ss_dssp             TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred             CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            45799999999999999998776553  345777776443

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=93.74  E-value=0.28  Score=41.01  Aligned_cols=33  Identities=21%  Similarity=0.178  Sum_probs=25.0

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      +.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   80 (96)
T 2kvi_A           46 AFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS   80 (96)
T ss_dssp             TEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence            699999999999999998766543  234556555

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=93.61  E-value=0.29  Score=41.23  Aligned_cols=28  Identities=18%  Similarity=0.375  Sum_probs=22.2

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKY  213 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~  213 (701)
                      .+..+||.|.|||.+..+   +.|+++|+++
T Consensus        24 ~~~~~~l~V~nlp~~~~~---~~l~~~f~~~   51 (101)
T 2la4_A           24 PPRVTTAYIGNIPHFATE---ADLIPLFQNF   51 (101)
T ss_dssp             CSSCCEEEEESCCTTCCH---HHHHHHHHTT
T ss_pred             CCCCCEEEEcCCCcccCH---HHHHHHHHhC
Confidence            345689999999997754   6788888876

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=93.57  E-value=0.26  Score=42.91  Aligned_cols=36  Identities=17%  Similarity=0.048  Sum_probs=27.3

Q ss_pred             CCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780          294 ENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP  329 (701)
Q Consensus       294 ~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP  329 (701)
                      ..|.|||+|++..+|..|.+.+...  +...+.|+.|.
T Consensus        66 ~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~  103 (111)
T 2jvr_A           66 FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD  103 (111)
T ss_dssp             SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred             CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence            3589999999999999999876544  23456677764

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=93.54  E-value=0.16  Score=45.29  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=21.5

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                      +..|.|||+|.+. +|..|.+.+...
T Consensus        65 ~~rG~aFV~f~~~-~a~~Ai~~l~g~   89 (131)
T 2m2b_A           65 LNRGFAFIQLSTI-EAAQLLQILQAL   89 (131)
T ss_dssp             SBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred             CcceEEEEEECCH-HHHHHHHHhcCC
Confidence            4568999999999 999999887765

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=93.51  E-value=0.47  Score=39.90  Aligned_cols=35  Identities=23%  Similarity=0.114  Sum_probs=26.1

Q ss_pred             CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      ..+.|||+|.+..+|..|.+.++...  ...+.|+.|
T Consensus        36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   72 (101)
T 2hvz_A           36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS   72 (101)
T ss_dssp             SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred             CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence            35799999999999999998765442  334666665

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=93.49  E-value=0.37  Score=41.42  Aligned_cols=34  Identities=26%  Similarity=0.256  Sum_probs=25.7

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      .|.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  100 (108)
T 2jvo_A           65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS  100 (108)
T ss_dssp             TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence            3799999999999999998766542  334566665

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.47  E-value=0.34  Score=41.31  Aligned_cols=35  Identities=14%  Similarity=0.095  Sum_probs=25.3

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccC----CCCceEEeeCC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSE----NPMLWVTEMAP  329 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~----~p~~~~v~~AP  329 (701)
                      .|.|||+|.+..+|..|.+.+...    ....+.|+.|-
T Consensus        51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~   89 (101)
T 2cq1_A           51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN   89 (101)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred             CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence            379999999999999998865422    23345666664

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.38  E-value=0.16  Score=43.99  Aligned_cols=36  Identities=14%  Similarity=0.154  Sum_probs=27.7

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                      +..|.|||+|.+..+|+.|.+.+...  ....+.|+.|
T Consensus        61 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a   98 (111)
T 2cpi_A           61 GPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLG   98 (111)
T ss_dssp             CCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESC
T ss_pred             CCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEec
Confidence            35689999999999999999976654  2345667766

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=93.24  E-value=0.22  Score=42.75  Aligned_cols=28  Identities=29%  Similarity=0.577  Sum_probs=22.4

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKY  213 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~  213 (701)
                      ..+.++|.|.|+|.+..+   +.|+++|+.+
T Consensus         8 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~   35 (107)
T 2lmi_A            8 VDDVFLIRAQGLPWSCTM---EDVLNFFSDC   35 (107)
T ss_dssp             CSSCCEEEEECCCSSCCS---HHHHHHTTTS
T ss_pred             CCCccEEEEeCCCCCCCH---HHHHHHHHhc
Confidence            345689999999998764   6789999875

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.20  E-value=0.4  Score=40.97  Aligned_cols=35  Identities=14%  Similarity=0.066  Sum_probs=26.0

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC----CCCceEEeeCCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE----NPMLWVTEMAPE  330 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~----~p~~~~v~~AP~  330 (701)
                      +.|||+|.+..+|..|.+.+...    ....+.|+.|-.
T Consensus        53 g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~   91 (102)
T 1x4d_A           53 NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK   91 (102)
T ss_dssp             SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred             CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence            57999999999999999876543    234566777653

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.06  E-value=0.13  Score=43.42  Aligned_cols=41  Identities=15%  Similarity=0.177  Sum_probs=35.4

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeCCCCCCeee
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMAPEPNDVLW  336 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~AP~P~DIiW  336 (701)
                      |.|||+|.++.+|+.|.+.++...-  ..++++.|+..+|++=
T Consensus        47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~   89 (96)
T 2diu_A           47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE   89 (96)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred             CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence            8999999999999999988777653  5688999999999863

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=92.97  E-value=0.66  Score=38.90  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=25.6

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      .|.|||+|++..+|..|.+.+....  ...+.++.|
T Consensus        57 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a   92 (97)
T 2xnq_A           57 NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS   92 (97)
T ss_dssp             SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            3789999999999999998766542  344566665

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=92.92  E-value=0.18  Score=45.05  Aligned_cols=27  Identities=22%  Similarity=0.447  Sum_probs=22.3

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKY  213 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~  213 (701)
                      ...++|.|.|||.+..+   +.|+++|+++
T Consensus        40 ~~~~~lfVgnLp~~~te---~dL~~~F~~~   66 (126)
T 2hgm_A           40 ANDGFVRLRGLPFGCTK---EEIVQFFSGL   66 (126)
T ss_dssp             SSCCEEEEECCCTTCCH---HHHHHHTTTS
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHhcC
Confidence            34689999999998764   7799999876

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=92.87  E-value=0.7  Score=42.00  Aligned_cols=75  Identities=19%  Similarity=0.161  Sum_probs=54.1

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++.  .+.++.+.+                                      
T Consensus        71 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~G--~i~~v~i~~--------------------------------------  107 (150)
T 2i2y_A           71 PLDCKVYVGNLGNNGNK---TELERAFGYYG--PLRSVWVAR--------------------------------------  107 (150)
T ss_dssp             TTSCEEEEESCCSCCSC---HHHHHHHHHHS--CEEEEEECS--------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhhC--CEEEEEEee--------------------------------------
Confidence            45689999999998764   67899998863  444444310                                      


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                                  +                 ..|.|||+|.+..+|..|.+.++...  ...+.|+.|-.
T Consensus       108 ------------~-----------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  147 (150)
T 2i2y_A          108 ------------N-----------------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG  147 (150)
T ss_dssp             ------------S-----------------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred             ------------C-----------------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence                        0                 24799999999999999998766543  34566777643

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=92.78  E-value=0.42  Score=45.98  Aligned_cols=77  Identities=13%  Similarity=0.159  Sum_probs=54.4

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ..++|.|.|||.+..+   +.|+++|+++  |.+.++.+.++.                                     
T Consensus       124 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~-------------------------------------  161 (216)
T 2qfj_A          124 AFNRIYVASVHQDLSD---DDIKSVFEAF--GKIKSATLARDP-------------------------------------  161 (216)
T ss_dssp             TSCEEEEECCCTTCCH---HHHHHHHTTS--SCEEEEEEEECT-------------------------------------
T ss_pred             CCcEEEEeCCCCcCCH---HHHHHHHhcc--CCeeEEEEEecC-------------------------------------
Confidence            4579999999998653   7799999876  456666654320                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                               ...+..+.|||+|++..+|..|.+.++...  ...+.|+.|
T Consensus       162 -------------------------~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a  202 (216)
T 2qfj_A          162 -------------------------TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA  202 (216)
T ss_dssp             -------------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred             -------------------------CCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence                                     002345799999999999999999876543  234556554

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=92.74  E-value=0.28  Score=48.27  Aligned_cols=39  Identities=13%  Similarity=0.120  Sum_probs=30.7

Q ss_pred             CcceeEEEeCCCC-CChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780          184 PSHFTVLVRAVPW-SAEQSYSESVKEFFMKYYAPSYLSHHMVHRS  227 (701)
Q Consensus       184 ~s~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~  227 (701)
                      +..+||.|.|||. +..+   +.|+++|+++  |.+.++.+.++-
T Consensus        32 ~~~~~l~V~nLp~~~~te---~~L~~~F~~~--G~i~~v~i~~~~   71 (229)
T 2adc_A           32 AGNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKILFNK   71 (229)
T ss_dssp             CCCSEEEEESCCTTTCCH---HHHHHHHHHH--TCEEEEEECCTT
T ss_pred             CCCCEEEEeCCCcccCCH---HHHHHHHHhC--CCeEEEEEEECC
Confidence            4568999999998 7654   7799999987  457788877654

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=92.60  E-value=0.38  Score=41.81  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=20.4

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                      +.|||+|.+..+|+.|.+.+...
T Consensus        52 g~afV~f~~~~~a~~Ai~~l~g~   74 (115)
T 3beg_B           52 GTGVVEFVRKEDMTYAVRKLDNT   74 (115)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CEEEEEECCHHHHHHHHHHhCCC
Confidence            89999999999999999977654

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=92.46  E-value=0.2  Score=46.17  Aligned_cols=33  Identities=15%  Similarity=0.542  Sum_probs=25.0

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHM  223 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i  223 (701)
                      ++||.|.|||.+..+   +.|+++|+++  |.+.++.+
T Consensus         3 ~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i   35 (167)
T 2cjk_A            3 SCKMFIGGLNWDTTE---DNLREYFGKY--GTVTDLKI   35 (167)
T ss_dssp             GGEEEECSCCTTCCH---HHHHHHHTTT--CCEEEEEC
T ss_pred             CcEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEE
Confidence            579999999998764   7799999876  34555543

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=92.37  E-value=0.1  Score=48.67  Aligned_cols=37  Identities=16%  Similarity=0.094  Sum_probs=28.8

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      .+..|.|||+|.+..+|..|.+.++...  ...+.++.|
T Consensus       133 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a  171 (175)
T 1fje_B          133 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT  171 (175)
T ss_dssp             SSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred             CCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence            4567999999999999999999776542  344667776

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=92.25  E-value=0.35  Score=45.75  Aligned_cols=37  Identities=8%  Similarity=0.250  Sum_probs=28.2

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV  224 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~  224 (701)
                      ....+||.|.|||.+..+   +.|+++|+++  |.+.++.+.
T Consensus        10 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~   46 (196)
T 1l3k_A           10 PEQLRKLFIGGLSFETTD---ESLRSHFEQW--GTLTDCVVM   46 (196)
T ss_dssp             CGGGGEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEE
Confidence            345789999999998754   7799999987  456666654

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=92.18  E-value=0.27  Score=46.85  Aligned_cols=38  Identities=13%  Similarity=0.120  Sum_probs=29.3

Q ss_pred             cceeEEEeCCCC-CChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780          185 SHFTVLVRAVPW-SAEQSYSESVKEFFMKYYAPSYLSHHMVHRS  227 (701)
Q Consensus       185 s~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~  227 (701)
                      +++||.|.|||. +..+   +.|+++|+++  |.+.++.+.++-
T Consensus         2 ~~~~l~v~nlp~~~~~~---~~l~~~F~~~--G~i~~v~i~~~~   40 (198)
T 1qm9_A            2 GNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKILFNK   40 (198)
T ss_dssp             CCCEEEEECCCSSSCCH---HHHHHHHHTT--CCCSEEECSTTC
T ss_pred             CCcEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEEEeCC
Confidence            468999999999 7654   7799999987  457777776553

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=91.91  E-value=0.35  Score=47.84  Aligned_cols=79  Identities=11%  Similarity=0.141  Sum_probs=53.9

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ..+||.|.|||.+..+   +.|+++|+++....+.++.+.+|-                                     
T Consensus        67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~d~-------------------------------------  106 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENR-------------------------------------  106 (229)
T ss_dssp             --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEECT-------------------------------------
T ss_pred             CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEecC-------------------------------------
Confidence            4579999999998764   779999987632256666665430                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                               ...+..+.|||+|.+..+|+.|.+.+....  -..+.|+.|
T Consensus       107 -------------------------~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a  147 (229)
T 3q2s_C          107 -------------------------ANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV  147 (229)
T ss_dssp             -------------------------TTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred             -------------------------CCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence                                     002335799999999999999988665443  234566665

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.89  E-value=0.84  Score=37.78  Aligned_cols=33  Identities=9%  Similarity=-0.118  Sum_probs=23.8

Q ss_pred             eEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          297 VAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       297 ~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                      .|||+|.+..+|..|.+ +....  ...+.|+.|.+
T Consensus        47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~   81 (94)
T 2e5g_A           47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ   81 (94)
T ss_dssp             EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred             EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence            99999999999999998 55432  23345555543

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=91.89  E-value=0.46  Score=43.85  Aligned_cols=78  Identities=18%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...++|.|.|+|.+..+   +.|+++|+++  |.+.++.+.++-                                    
T Consensus        92 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~------------------------------------  130 (172)
T 2g4b_A           92 PGAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKDS------------------------------------  130 (172)
T ss_dssp             TTTTCEEEECCCTTCCH---HHHHHHHHTT--SCEEEEEEEECT------------------------------------
T ss_pred             CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCceEEEEEecC------------------------------------
Confidence            34689999999997654   7799999876  455555553320                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                ..++..|.|||+|.+..+|..|.+.++...  ...+.|+.|
T Consensus       131 --------------------------~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A  171 (172)
T 2g4b_A          131 --------------------------ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA  171 (172)
T ss_dssp             --------------------------TTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             --------------------------CCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence                                      002345799999999999999998776543  233445444

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=91.74  E-value=0.42  Score=45.94  Aligned_cols=77  Identities=21%  Similarity=0.181  Sum_probs=53.0

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ..+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++.                                     
T Consensus        27 ~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~-------------------------------------   64 (216)
T 2qfj_A           27 IMSRVYVGSIYYELGE---DTIRQAFAPF--GPIKSIDMSWDS-------------------------------------   64 (216)
T ss_dssp             HHTEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEECCC--------------------------------------
T ss_pred             cCCEEEEECCCCCCCH---HHHHHHHHhC--CCEEEEEEeecC-------------------------------------
Confidence            3579999999998764   7799999887  355555542210                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~A  328 (701)
                                               ...+..+.|||+|.+..+|..|.+.+....-  ..+.+..+
T Consensus        65 -------------------------~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~  105 (216)
T 2qfj_A           65 -------------------------VTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP  105 (216)
T ss_dssp             -------------------------CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred             -------------------------CCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence                                     0124568999999999999999987665432  33445443

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.70  E-value=0.22  Score=43.93  Aligned_cols=35  Identities=17%  Similarity=0.099  Sum_probs=25.2

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      +..|.|||+|.+..+|..|.+ +....  ...+.|..|
T Consensus        65 ~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a  101 (124)
T 1wel_A           65 KATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI  101 (124)
T ss_dssp             SEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred             CCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence            446899999999999999998 54432  234555555

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=91.61  E-value=0.92  Score=45.45  Aligned_cols=49  Identities=18%  Similarity=0.129  Sum_probs=37.5

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCeeecccCCch
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDVLWSNLSIPY  343 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DIiW~Nl~~~~  343 (701)
                      .|.|||+|.+..+|..|.+.+....  ...+.+..|....-|+=.||....
T Consensus        58 kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~  108 (261)
T 3sde_A           58 RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVV  108 (261)
T ss_dssp             TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTC
T ss_pred             CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCC
Confidence            3799999999999999998766542  345678888777777777777643

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=91.51  E-value=0.47  Score=43.51  Aligned_cols=35  Identities=11%  Similarity=0.027  Sum_probs=25.8

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                      +..|.|||+|.+..+|..|.+ +...  ....+.|+.|
T Consensus       127 ~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a  163 (167)
T 2cjk_A          127 QSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA  163 (167)
T ss_dssp             TTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred             ccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence            456899999999999999988 3322  2345667776

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=91.12  E-value=1.2  Score=36.91  Aligned_cols=34  Identities=21%  Similarity=0.130  Sum_probs=26.3

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      .|.|||+|.++.+|..|.+.+...+  .....|..|
T Consensus        43 kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A   78 (89)
T 2wbr_A           43 QGIALCKYTTREEANKAQMALNNCVLANTTIFAESP   78 (89)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred             CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence            5899999999999999999876543  234566666

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=90.96  E-value=0.84  Score=46.10  Aligned_cols=49  Identities=18%  Similarity=0.179  Sum_probs=38.3

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCCCCeeecccCCch
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEPNDVLWSNLSIPY  343 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P~DIiW~Nl~~~~  343 (701)
                      .|.|||+|.+..+|..|.+.+...  ....+.++.+|...-|+=.||....
T Consensus        57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~  107 (284)
T 3smz_A           57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSL  107 (284)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcC
Confidence            479999999999999999876654  2345677888887778888887654

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=90.62  E-value=0.43  Score=48.58  Aligned_cols=39  Identities=23%  Similarity=0.289  Sum_probs=29.6

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecc
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRS  227 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~  227 (701)
                      .+.+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++.
T Consensus        39 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~   77 (292)
T 2ghp_A           39 RELTTVLVKNLPKSYNQ---NKVYKYFKHC--GPIIHVDVADSL   77 (292)
T ss_dssp             ---CEEEEEEECTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence            45689999999998764   7799999987  467888887753

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=90.25  E-value=0.47  Score=45.50  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=26.8

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH  225 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~  225 (701)
                      .+||.|.|+|.+..   .+.|+++|+++  |.+.++.+.+
T Consensus       109 ~~~l~V~nLp~~~t---~~~L~~~F~~~--G~v~~v~i~~  143 (193)
T 2voo_A          109 NRSVYIKGFPTDAT---LDDIKEWLEDK--GQVLNIQMRR  143 (193)
T ss_dssp             HTEEEEECCCTTCC---HHHHHHHHTTS--CCEEEEEEEE
T ss_pred             cCEEEecCCCCcCC---HHHHHHHHhcC--CCEEEEEEEE
Confidence            47999999999765   37799999986  4566666643

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=90.11  E-value=0.83  Score=49.75  Aligned_cols=78  Identities=15%  Similarity=0.179  Sum_probs=55.7

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP  265 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~  265 (701)
                      ..||.|.|||.+..+   +.|+++|..+  |.|.++.|+.|-                                      
T Consensus       102 ~~~lfV~nL~~~~te---~~L~~~F~~~--G~I~~v~i~~d~--------------------------------------  138 (437)
T 3pgw_S          102 FKTLFVARVNYDTTE---SKLRREFEVY--GPIKRIHMVYSK--------------------------------------  138 (437)
T ss_pred             CCEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEEeeccC--------------------------------------
Confidence            479999999998754   7799999986  456566553220                                      


Q ss_pred             hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                                              ...+..|.|||+|.+..+|..|.+.+....  ...+.|..|-.
T Consensus       139 ------------------------~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~  181 (437)
T 3pgw_S          139 ------------------------RSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG  181 (437)
T ss_pred             ------------------------CCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence                                    012346899999999999999998876553  23456776643

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=89.91  E-value=1.1  Score=42.12  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=54.5

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...++|.|.|+|.+..+   +.|+++|+++  |.+.++.+.++.                                    
T Consensus       112 ~~~~~l~v~nl~~~~~~---~~l~~~f~~~--G~v~~~~~~~~~------------------------------------  150 (198)
T 2yh0_A          112 DSAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKDS------------------------------------  150 (198)
T ss_dssp             CCCCEEEEECCCTTCCH---HHHHHHHHTB--SCEEEEEEEECT------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHHc--CCccEEEEeecC------------------------------------
Confidence            34589999999997653   6799999876  355555553220                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                ...+..|.|||+|.+..+|..|.+.++...  ...+.++.|
T Consensus       151 --------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a  191 (198)
T 2yh0_A          151 --------------------------ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA  191 (198)
T ss_dssp             --------------------------TTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred             --------------------------CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence                                      012345799999999999999998766543  334566666

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=89.81  E-value=1.6  Score=44.06  Aligned_cols=39  Identities=10%  Similarity=-0.013  Sum_probs=29.5

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                      ++..|.|||+|.+..+|..|.+.+....  ...+.+..|..
T Consensus       223 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~  263 (284)
T 3smz_A          223 GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP  263 (284)
T ss_dssp             CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred             CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence            3457899999999999999999776653  33466777643

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=89.41  E-value=0.98  Score=42.53  Aligned_cols=36  Identities=11%  Similarity=0.277  Sum_probs=26.7

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV  224 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~  224 (701)
                      ...++|.|.|||.+..+   +.|+++|+.+  |.+.++.+.
T Consensus       102 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~  137 (196)
T 1l3k_A          102 LTVKKIFVGGIKEDTEE---HHLRDYFEQY--GKIEVIEIM  137 (196)
T ss_dssp             -CCSEEEEECCTTTCCH---HHHHHHHTTT--SCEEEEEEE
T ss_pred             CCcceEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEe
Confidence            34589999999998654   7799999876  456666654

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=89.09  E-value=1.3  Score=42.71  Aligned_cols=35  Identities=17%  Similarity=0.066  Sum_probs=26.5

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                      |.|||+|.+..+|+.|.+.+....  ...+.|..|-.
T Consensus        43 g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~   79 (205)
T 3tyt_A           43 GAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ   79 (205)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence            789999999999999999877553  23455666643

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=88.68  E-value=1.6  Score=43.28  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.2

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSENP  320 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~p  320 (701)
                      |.|||+|.+..+|..|.+.+....-
T Consensus       180 G~AFV~F~~~~~Ae~A~~am~g~~l  204 (240)
T 3u1l_A          180 NCGFVKFKYQANAEFAKEAMSNQTL  204 (240)
T ss_dssp             TEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred             CEEEEEeCCHHHHHHHHHHhCCCEE
Confidence            7999999999999999987765443

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=88.12  E-value=2  Score=43.27  Aligned_cols=40  Identities=23%  Similarity=0.135  Sum_probs=29.7

Q ss_pred             CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCC
Q 039780          294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPND  333 (701)
Q Consensus       294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~D  333 (701)
                      ..|.|||+|.+..+|..|.+.++...  ...+.|+.|-...|
T Consensus        51 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   92 (282)
T 3pgw_A           51 MRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD   92 (282)
T ss_pred             cceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcc
Confidence            45899999999999999998776543  34566777754444

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=85.48  E-value=2.6  Score=42.39  Aligned_cols=33  Identities=24%  Similarity=0.204  Sum_probs=24.6

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCCC---CceEEeeC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSENP---MLWVTEMA  328 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~p---~~~~v~~A  328 (701)
                      |.|||+|.+..+|..|.+.++...-   ..+.|+.|
T Consensus       245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a  280 (282)
T 3pgw_A          245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA  280 (282)
T ss_pred             cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence            6999999999999999998776432   23445443

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=85.00  E-value=3.9  Score=37.33  Aligned_cols=26  Identities=23%  Similarity=0.446  Sum_probs=21.3

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKY  213 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~  213 (701)
                      .++||.|.|||.+..+   +.|+++|+++
T Consensus         3 ~~~~l~V~nLp~~~t~---~~l~~~F~~~   28 (172)
T 2g4b_A            3 SARRLYVGNIPFGITE---EAMMDFFNAQ   28 (172)
T ss_dssp             GGGEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred             cccEEEEcCCCcccCH---HHHHHHHHHH
Confidence            3589999999998764   7788888876

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=84.98  E-value=2.7  Score=41.95  Aligned_cols=75  Identities=16%  Similarity=0.134  Sum_probs=52.9

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP  265 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~  265 (701)
                      ..+|.|.|+|.+..+   +.|+++|+.+  |.+.++.+.+|                            +          
T Consensus        96 ~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~----------------------------~----------  132 (261)
T 3sde_A           96 GAALTVKNLSPVVSN---ELLEQAFSQF--GPVEKAVVVVD----------------------------D----------  132 (261)
T ss_dssp             SSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEE----------------------------T----------
T ss_pred             CCcccccCCCCCCCH---HHHHHHHHhc--CCeEEEEeeeC----------------------------C----------
Confidence            569999999987653   7799999876  35666655332                            0          


Q ss_pred             hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC------CCCceEEeeC
Q 039780          266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE------NPMLWVTEMA  328 (701)
Q Consensus       266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~------~p~~~~v~~A  328 (701)
                                               .++..|.|||+|.+..+|..|.+.+.+.      .+....+.+|
T Consensus       133 -------------------------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~  176 (261)
T 3sde_A          133 -------------------------RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPM  176 (261)
T ss_dssp             -------------------------TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred             -------------------------CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence                                     0234589999999999999999887432      2344556554

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.80  E-value=1.3  Score=37.50  Aligned_cols=37  Identities=22%  Similarity=-0.016  Sum_probs=28.3

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCCCCceEEeeCC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAP  329 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~p~~~~v~~AP  329 (701)
                      +..|.|||+|.+..+|..|.+.........+.|+.|-
T Consensus        52 ~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~   88 (100)
T 2d9o_A           52 KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE   88 (100)
T ss_dssp             SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred             CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence            4578999999999999999987554444556677763

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.79  E-value=1.7  Score=37.33  Aligned_cols=46  Identities=15%  Similarity=0.066  Sum_probs=34.3

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCCCCeeecc
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEPNDVLWSN  338 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P~DIiW~N  338 (701)
                      +..|.|||+|.+..+|+.|.+.+...  ....+.++.|.+..|.-++.
T Consensus        62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~  109 (112)
T 2dit_A           62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP  109 (112)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred             CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence            35799999999999999999887654  33456778876666654443

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=84.24  E-value=1.6  Score=44.24  Aligned_cols=38  Identities=16%  Similarity=0.182  Sum_probs=27.7

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR  226 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~  226 (701)
                      ..++|.|.|+|.+..+   +.|+++|+.+. ..+.++.+.++
T Consensus       116 ~~~~l~v~nlp~~~t~---~~l~~~f~~~G-~~i~~v~i~~~  153 (292)
T 2ghp_A          116 TECTLWMTNFPPSYTQ---RNIRDLLQDIN-VVALSIRLPSL  153 (292)
T ss_dssp             CSCEEEEECCCTTCCH---HHHHHHHHHTT-CCCCEEECC--
T ss_pred             CCCEEEEECCCCCCCH---HHHHHHHHHhC-CCeEEEEEEeC
Confidence            4689999999998754   67999999863 15667776554

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=82.90  E-value=0.96  Score=38.61  Aligned_cols=37  Identities=19%  Similarity=0.104  Sum_probs=28.5

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                      +..|.|||+|.+..+|+.|.+.++...  .....++.+|
T Consensus        66 ~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp  104 (104)
T 1jmt_A           66 HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP  104 (104)
T ss_dssp             SSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred             CccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence            457999999999999999999877653  3345566665

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=82.09  E-value=3  Score=40.11  Aligned_cols=24  Identities=8%  Similarity=0.177  Sum_probs=21.3

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                      .|.|||.|.+..+|..|.+.++..
T Consensus       165 ~g~gfV~f~~~~~A~~Ai~~lng~  188 (205)
T 3tyt_A          165 SSSGLLEWDSKSDALETLGFLNHY  188 (205)
T ss_dssp             SEEEEEECSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEEeCCHHHHHHHHHHhCCC
Confidence            489999999999999999987764

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=80.86  E-value=1.5  Score=38.17  Aligned_cols=36  Identities=19%  Similarity=0.226  Sum_probs=28.1

Q ss_pred             CCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          294 ENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       294 ~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                      ..|.|||+|.+..+|..|.+.+....  ...+.++.+|
T Consensus        54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~   91 (114)
T 3s6e_A           54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP   91 (114)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence            46999999999999999999887653  3345566654

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.56  E-value=1.4  Score=38.05  Aligned_cols=24  Identities=13%  Similarity=0.169  Sum_probs=21.1

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhc
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILH  316 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~  316 (701)
                      +..|.|||+|.+..+|+.|.+.++
T Consensus        50 ~~~G~aFV~f~~~~~a~~Ai~~~~   73 (114)
T 2dnl_A           50 PPKGYAFLLFQEESSVQALIDACL   73 (114)
T ss_dssp             CTTSEEEECCSSHHHHHHHHHHSE
T ss_pred             CcccEEEEEECCHHHHHHHHHhhh
Confidence            456899999999999999998764

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.11  E-value=2.4  Score=34.72  Aligned_cols=40  Identities=10%  Similarity=0.212  Sum_probs=30.4

Q ss_pred             CCCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEec
Q 039780          182 PNPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHR  226 (701)
Q Consensus       182 ~~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~  226 (701)
                      .....+||.|.|||.+..+   +.|+++|+++  +.+.++.+.++
T Consensus         6 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~v~~~~~   45 (92)
T 2dgt_A            6 SGKASTKLHVGNISPTCTN---QELRAKFEEY--GPVIECDIVKD   45 (92)
T ss_dssp             CCCSSEEEEEESCCSSCCH---HHHHHHHHTT--SCCCEEEECSS
T ss_pred             CCCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEECC
Confidence            3455689999999998754   7799999986  45677776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	701
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.14
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	97.09
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	96.99
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	96.99
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	96.95
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	96.92
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	96.89
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	96.65
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	96.65
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	96.64
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	96.58
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	96.57
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	96.55
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	96.52
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	96.52
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	96.5
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	96.49
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	96.38
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	96.38
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	96.37
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	96.31
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	96.24
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	96.2
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	96.19
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	96.16
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	96.13
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	96.13
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	96.1
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	96.1
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	96.08
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	95.96
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	95.94
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	95.91
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	95.9
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	95.85
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	95.75
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	95.67
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	95.63
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	95.57
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	95.55
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	95.54
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	95.48
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	95.46
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	95.46
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	95.42
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	95.37
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	95.3
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	95.26
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	95.26
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	95.22
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	95.02
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	94.83
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	94.79
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	94.72
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	94.67
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	94.64
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	94.54
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	94.47
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	94.46
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	94.26
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	93.99
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	93.84
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	93.71
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	93.23
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	93.1
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	92.75
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	92.67
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	91.39
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	91.13
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	90.77
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	88.85
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	87.59
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	84.32
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	81.04
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	80.73

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0011  Score=54.12  Aligned_cols=83  Identities=18%  Similarity=0.166  Sum_probs=58.8

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++.  .+.++.+.+|                           +         
T Consensus         7 ~~~~tlfV~nLp~~~t~---~~l~~~F~~~G--~v~~v~~~~d---------------------------~---------   45 (93)
T d1x5ua1           7 NQDATVYVGGLDEKVSE---PLLWELFLQAG--PVVNTHMPKD---------------------------R---------   45 (93)
T ss_dssp             CTTTEEEEECCCTTCCH---HHHHHHHHTTS--CEEEEECCBC---------------------------S---------
T ss_pred             CCCCEEEEeCCCCcCCH---HHHHHHHHHhC--Cccccceeec---------------------------c---------
Confidence            34579999999998764   77999998873  5555554322                           0         


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC-CCCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA-PEPND  333 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A-P~P~D  333 (701)
                                                ..++..|.|||+|.+..+|+.|.+.++...  ...+.|+.| |..+|
T Consensus        46 --------------------------~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~~~n   92 (93)
T d1x5ua1          46 --------------------------VTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN   92 (93)
T ss_dssp             --------------------------SSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred             --------------------------cccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCCC
Confidence                                      012345799999999999999999877553  345778776 44443

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.09  E-value=0.00086  Score=53.29  Aligned_cols=78  Identities=15%  Similarity=0.150  Sum_probs=55.4

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ++.||.|.|||.+..+   +.|+++|+++.  .+.++.+++|-                                     
T Consensus         1 s~t~l~V~nLp~~~t~---~~l~~~F~~~G--~v~~~~i~~~~-------------------------------------   38 (82)
T d1b7fa1           1 SNTNLIVNYLPQDMTD---RELYALFRAIG--PINTCRIMRDY-------------------------------------   38 (82)
T ss_dssp             CCSEEEEECCCTTCCH---HHHHHHHHTTS--CEEEEECCEET-------------------------------------
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHHHHhC--Ccceeeeeeec-------------------------------------
Confidence            3568999999998764   77999999874  45555543220                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                                               ...+..+.|||+|.+..+|+.|.+.+....  ...++++.|.
T Consensus        39 -------------------------~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1          39 -------------------------KTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             -------------------------TTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             -------------------------ccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence                                     012346899999999999999999877653  3346677763

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.99  E-value=0.0017  Score=52.01  Aligned_cols=77  Identities=22%  Similarity=0.334  Sum_probs=55.4

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      +..+|.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-                                     
T Consensus         5 ~~t~lfV~nlp~~~te---~~l~~~F~~~--G~i~~~~~~~d~-------------------------------------   42 (85)
T d1b7fa2           5 KDTNLYVTNLPRTITD---DQLDTIFGKY--GSIVQKNILRDK-------------------------------------   42 (85)
T ss_dssp             TTCEEEEESCCTTCCH---HHHHHHHTSS--SCEEEEEEEECT-------------------------------------
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHHHhh--CCEeeeeeeccc-------------------------------------
Confidence            4568999999998764   7899999886  456666664330                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC----CceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP----MLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p----~~~~v~~A  328 (701)
                                               ...++.|.|||+|.+..+|..|.+.++....    ..+.|+.|
T Consensus        43 -------------------------~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~A   85 (85)
T d1b7fa2          43 -------------------------LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA   85 (85)
T ss_dssp             -------------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             -------------------------ccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEEC
Confidence                                     0123457999999999999999998776543    23556655

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.99  E-value=0.0019  Score=52.03  Aligned_cols=79  Identities=18%  Similarity=0.231  Sum_probs=56.0

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ..+.++|.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-                                   
T Consensus         4 s~~~~~l~V~nL~~~~t~---~~l~~~F~~~--G~i~~v~i~~d~-----------------------------------   43 (88)
T d1rk8a_           4 SVEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLDR-----------------------------------   43 (88)
T ss_dssp             CC-CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred             CCCCCEEEEeCCCCCCCH---HHHHHHHHHc--CCcccccccccc-----------------------------------
Confidence            455789999999998764   7799999886  456677665430                                   


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                 ..++..|.|||+|.+..+|..|.+.++...  ...+.|+.|
T Consensus        44 ---------------------------~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a   84 (88)
T d1rk8a_          44 ---------------------------RTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC   84 (88)
T ss_dssp             ---------------------------TTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             ---------------------------cccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence                                       002334799999999999999998776543  234556655

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0022  Score=52.28  Aligned_cols=80  Identities=16%  Similarity=0.132  Sum_probs=57.9

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      .+.||.|.|||.+..+   +.|+++|+++.  .+.++.+.+|-                                     
T Consensus         6 ~s~tlfV~nlp~~~te---~~l~~~F~~~G--~i~~v~i~~~~-------------------------------------   43 (93)
T d1h2vz_           6 KSCTLYVGNLSFYTTE---EQIYELFSKSG--DIKKIIMGLDK-------------------------------------   43 (93)
T ss_dssp             TCCEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEECT-------------------------------------
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHHHHHC--Ccceecccccc-------------------------------------
Confidence            4569999999998754   78999999873  56677764320                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP  331 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P  331 (701)
                             .                  ..+..|.|||+|.+..+|+.|.+.++...  ...+.|+.|+.+
T Consensus        44 -------~------------------~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~~~   87 (93)
T d1h2vz_          44 -------M------------------KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGF   87 (93)
T ss_dssp             -------T------------------TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCC
T ss_pred             -------c------------------cccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence                   0                  02234799999999999999999876543  335667777654

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0022  Score=51.75  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=57.8

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ++++|.|.|||.+..+   +.|+++|+++.  .+.++.+.++                                      
T Consensus         4 ~~~kifV~nLp~~~t~---~~l~~~F~~~G--~i~~~~~~~~--------------------------------------   40 (90)
T d1x5sa1           4 DEGKLFVGGLSFDTNE---QSLEQVFSKYG--QISEVVVVKD--------------------------------------   40 (90)
T ss_dssp             CCSEEEEESCCTTCCH---HHHHHHHHHHS--CCCEEEECCC--------------------------------------
T ss_pred             CCCEEEEECCCCcCCH---HHHHHhhhccc--cccceeeccc--------------------------------------
Confidence            4578999999998764   77999999873  4544443211                                      


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPND  333 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~D  333 (701)
                                              ....++.|.|||+|.+..+|..|.+.++...  ...+.|+.|..+.|
T Consensus        41 ------------------------~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~~~   87 (90)
T d1x5sa1          41 ------------------------RETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD   87 (90)
T ss_dssp             ------------------------SSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred             ------------------------cccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCC
Confidence                                    0013346899999999999999998776543  34677888865554

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0012  Score=53.39  Aligned_cols=77  Identities=16%  Similarity=0.174  Sum_probs=54.9

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      +.+||.|.|||.+..+   +.|+++|+++.  .+.++.+.+|                            +         
T Consensus         4 ~~~tlfV~nLp~~~te---~~l~~~F~~~G--~i~~v~i~~d----------------------------~---------   41 (89)
T d2cqba1           4 TKRVLYVGGLAEEVDD---KVLHAAFIPFG--DITDIQIPLD----------------------------Y---------   41 (89)
T ss_dssp             CCSCEEEESCCSSCCH---HHHHHHHTTTS--CCCCEECCCC----------------------------S---------
T ss_pred             CCcEEEEeCCCCcCCH---HHHHHHHhhCC--eEEecccccc----------------------------c---------
Confidence            4689999999998764   78999998763  4555554221                            0         


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                               ..++..|.|||+|.+..+|..|.+.++...  ...+.++.|
T Consensus        42 -------------------------~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a   82 (89)
T d2cqba1          42 -------------------------ETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA   82 (89)
T ss_dssp             -------------------------SSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             -------------------------ccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence                                     012346899999999999999998776543  334667776

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.004  Score=49.11  Aligned_cols=75  Identities=19%  Similarity=0.165  Sum_probs=53.9

Q ss_pred             eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcch
Q 039780          187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPN  266 (701)
Q Consensus       187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~  266 (701)
                      .||.|.|||.+..+   +.|+++|+++  |.+.++.+.+|.                                       
T Consensus         3 t~l~V~nLp~~~te---~~l~~~f~~~--G~v~~v~i~~~~---------------------------------------   38 (82)
T d1fxla1           3 TNLIVNYLPQNMTQ---EEFRSLFGSI--GEIESCKLVRDK---------------------------------------   38 (82)
T ss_dssp             SEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECT---------------------------------------
T ss_pred             CEEEEECCCCCCCH---HHHHHHHHHh--CCcccccceeec---------------------------------------
Confidence            47999999998764   7799999986  356666654320                                       


Q ss_pred             hhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          267 SFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       267 ~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                             ..++..|.|||+|.+..+|..|.+.+....  ...+.++.|
T Consensus        39 -----------------------~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~A   79 (82)
T d1fxla1          39 -----------------------ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA   79 (82)
T ss_dssp             -----------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             -----------------------cCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence                                   002345799999999999999998776553  234567776

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0024  Score=53.12  Aligned_cols=79  Identities=22%  Similarity=0.307  Sum_probs=57.2

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      +.+||.|.|||.+..+   +.|+++|+++  |.+.++.+.++-                                     
T Consensus         7 ~~rtl~V~nLp~~~te---~~l~~~f~~~--G~i~~v~i~~~~-------------------------------------   44 (104)
T d1p1ta_           7 SLRSVFVGNIPYEATE---EQLKDIFSEV--GPVVSFRLVYDR-------------------------------------   44 (104)
T ss_dssp             HHSCEEEESCCTTSCH---HHHHHHHHTT--SCCSEEEEEEET-------------------------------------
T ss_pred             CCCEEEEECCCCcCCH---HHHHHhhhcc--cccccccccccc-------------------------------------
Confidence            4689999999998764   7799999886  467777765430                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                                 +              .++..|.|||+|.+..+|..|.+.+....  ...+.|+.|..
T Consensus        45 -----------~--------------tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~   87 (104)
T d1p1ta_          45 -----------E--------------TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS   87 (104)
T ss_dssp             -----------T--------------TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred             -----------c--------------eeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence                       0              01234789999999999999998765432  34567777644

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0029  Score=50.43  Aligned_cols=36  Identities=8%  Similarity=0.276  Sum_probs=28.3

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH  225 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~  225 (701)
                      +.++|.|.|||.+..+   +.|+++|+++  |.+.++.+.+
T Consensus         5 ~~~~lfV~nlp~~~te---~~l~~~F~~~--G~i~~v~i~~   40 (84)
T d1l3ka1           5 QLRKLFIGGLSFETTD---ESLRSHFEQW--GTLTDCVVMR   40 (84)
T ss_dssp             GGGEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred             CCcEEEEECCCCCCCH---HHHHHHHHhh--ccccceeecc
Confidence            3579999999998764   7899999986  4666766654

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0078  Score=48.44  Aligned_cols=77  Identities=14%  Similarity=0.116  Sum_probs=55.1

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ...+||.|.|||.+..+   +.|+++|+++  |.+.++.+.+|.                                    
T Consensus         6 ~~~~tl~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~d~------------------------------------   44 (90)
T d2cqia1           6 GQPRTLYVGNLSRDVTE---VLILQLFSQI--GPCKSCKMITEH------------------------------------   44 (90)
T ss_dssp             CCCCEEEEESCCTTCCH---HHHHHHHHHH--SCEEEEEEECCC------------------------------------
T ss_pred             CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCceeeeeeccc------------------------------------
Confidence            44689999999998764   7799999987  356666553220                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP  329 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP  329 (701)
                                                  ....+.|||+|.+..+|..|.+.+...  ....+.+..|=
T Consensus        45 ----------------------------~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~   84 (90)
T d2cqia1          45 ----------------------------TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT   84 (90)
T ss_dssp             ----------------------------CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             ----------------------------CccceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence                                        011368999999999999999876654  23456677773

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.0022  Score=51.36  Aligned_cols=78  Identities=14%  Similarity=0.162  Sum_probs=51.4

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ..+||.|.|||.+..+  ++.|+++|+++  |.+.++.+..+                                      
T Consensus         3 e~~~l~V~nLp~~~t~--ed~l~~~F~~~--G~i~~v~i~~~--------------------------------------   40 (86)
T d2ghpa3           3 EGREIMIRNLSTELLD--ENLLRESFEGF--GSIEKINIPAG--------------------------------------   40 (86)
T ss_dssp             TTTEEEEEEECTTTCC--HHHHHHHHGGG--SCEEEEECCSC--------------------------------------
T ss_pred             CCCEEEEECCCCCccc--HHHHHHHHHhh--hhccceeeecc--------------------------------------
Confidence            4689999999987533  35689999987  45655554210                                      


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                                 +            ....+..|.|||+|.+..+|..|.+ +...  ....+.|+.|
T Consensus        41 -----------~------------~~~~~~kg~afV~f~~~~~a~~Al~-~n~~~~~gr~l~V~~a   82 (86)
T d2ghpa3          41 -----------Q------------KEHSFNNCCAFMVFENKDSAERALQ-MNRSLLGNREISVSLA   82 (86)
T ss_dssp             -----------C------------C---CCCEEEEEEESSHHHHHHHGG-GTTEEETTEEEEEEEC
T ss_pred             -----------c------------CCccccceeeeEEECCHHHHHHHHh-cCCCEECCEEEEEEEc
Confidence                       0            0013456899999999999999986 3332  2334667766

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0052  Score=49.03  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             eeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcch
Q 039780          187 FTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPN  266 (701)
Q Consensus       187 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~  266 (701)
                      +.|.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-                                       
T Consensus         2 ~rlfV~nlp~~~te---~~l~~~F~~~--G~v~~v~i~~d~---------------------------------------   37 (85)
T d2u2fa_           2 HKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKDS---------------------------------------   37 (85)
T ss_dssp             CCEEEETCCSSCCS---HHHHHHHTSS--SCEEEEEEECCC---------------------------------------
T ss_pred             CEEEEECCCCCCCH---HHHHHHHHhc--CccceEEeeccc---------------------------------------
Confidence            56999999998765   7799999886  456676664320                                       


Q ss_pred             hhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          267 SFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       267 ~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                                             ..++..|.|||+|.+..+|..|.+.+....  ...+.|+.|.
T Consensus        38 -----------------------~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~   79 (85)
T d2u2fa_          38 -----------------------ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS   79 (85)
T ss_dssp             -----------------------SSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECC
T ss_pred             -----------------------cccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence                                   013456899999999999999999766543  3457777774

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0061  Score=48.55  Aligned_cols=68  Identities=21%  Similarity=0.383  Sum_probs=51.1

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP  265 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~  265 (701)
                      ..+|.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-                                      
T Consensus         6 ~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~d~--------------------------------------   42 (85)
T d1fxla2           6 DANLYVSGLPKTMTQ---KELEQLFSQY--GRIITSRILVDQ--------------------------------------   42 (85)
T ss_dssp             TCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT--------------------------------------
T ss_pred             CCEEEEeCCCCCCCH---HHHHHHHHHh--CCcccccccccc--------------------------------------
Confidence            468999999998764   7799999887  457777665430                                      


Q ss_pred             hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC
Q 039780          266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP  320 (701)
Q Consensus       266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p  320 (701)
                                              ..++..|.|||+|.+..+|..|.+.+.....
T Consensus        43 ------------------------~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~   73 (85)
T d1fxla2          43 ------------------------VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP   73 (85)
T ss_dssp             ------------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred             ------------------------ccccCCCeeEEEEcCHHHHHHHHHHhCCCEe
Confidence                                    0023357999999999999999998876543

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0048  Score=49.87  Aligned_cols=78  Identities=17%  Similarity=0.277  Sum_probs=55.2

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ...+|.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-                           .         
T Consensus         7 ~~~~lfV~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~d~---------------------------~---------   45 (90)
T d2cqga1           7 KTSDLIVLGLPWKTTE---QDLKEYFSTF--GEVLMVQVKKDL---------------------------K---------   45 (90)
T ss_dssp             CCCCEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEEECS---------------------------S---------
T ss_pred             CCCeEEEECCCCCCCH---HHHHHHHHhh--cccceeeeccCC---------------------------C---------
Confidence            3578999999998764   7899999986  467777775430                           0         


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCCCceEEeeCC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENPMLWVTEMAP  329 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p~~~~v~~AP  329 (701)
                                                .++..|.|||+|.+..+|..|.+..+.-+...+.++.|-
T Consensus        46 --------------------------tg~srG~aFV~f~~~~~a~~al~~~~~l~Gr~i~v~~a~   84 (90)
T d2cqga1          46 --------------------------TGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN   84 (90)
T ss_dssp             --------------------------SCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCC
T ss_pred             --------------------------CcccCCEEEEEECCHHHHHHHHhcCCccCCEEeEEEeCC
Confidence                                      012348999999999999999874332233456666664

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0053  Score=49.49  Aligned_cols=80  Identities=18%  Similarity=0.216  Sum_probs=57.3

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ...||.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-                                     
T Consensus         7 ~~~~i~V~nLp~~~t~---~~l~~~f~~~--G~v~~v~i~~d~-------------------------------------   44 (90)
T d2cq0a1           7 DNATIRVTNLSEDTRE---TDLQELFRPF--GSISRIYLAKDK-------------------------------------   44 (90)
T ss_dssp             SSEEEEEESCCTTCCH---HHHHTTSTTT--CCEEEEEEEECS-------------------------------------
T ss_pred             CCCEEEEECCCCCCCH---HHHHHHHHHh--cccccccccccc-------------------------------------
Confidence            4569999999998764   6799999886  456666664320                                     


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEP  331 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P  331 (701)
                                               ..++..|.|||+|.+..+|..|.+.+....  ...+.|++|-..
T Consensus        45 -------------------------~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~akp~   88 (90)
T d2cq0a1          45 -------------------------TTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS   88 (90)
T ss_dssp             -------------------------SSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             -------------------------cccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeeeCC
Confidence                                     002234799999999999999998876542  345678888533

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.007  Score=50.01  Aligned_cols=82  Identities=13%  Similarity=0.222  Sum_probs=58.1

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      |...+|.|.|||.+..+   +.|+++|+++.  .+.++.+.+|.                                    
T Consensus        16 p~~~~l~V~nLp~~~te---~~l~~~F~~~G--~i~~~~~~~~~------------------------------------   54 (102)
T d2cpza1          16 PEGANLFIYHLPQEFGD---QDLLQMFMPFG--NVVSAKVFIDK------------------------------------   54 (102)
T ss_dssp             STTCCEEEESCCSSCCH---HHHHHHHGGGS--CCSEEEEEECS------------------------------------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHhhc--cccccceeeec------------------------------------
Confidence            55578999999998764   77999999874  45555554320                                    


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPN  332 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~  332 (701)
                                                ..++..|.|||+|++..+|..|.+.+....  ...+.|++|-..+
T Consensus        55 --------------------------~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k~   99 (102)
T d2cpza1          55 --------------------------QTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN   99 (102)
T ss_dssp             --------------------------SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred             --------------------------ccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCCC
Confidence                                      002234799999999999999998776542  3456788875433

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.38  E-value=0.01  Score=48.55  Aligned_cols=81  Identities=19%  Similarity=0.207  Sum_probs=55.5

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      ..+.+|.|.|||.+..+   +.|+++|+++.  .+.++.+.+|                                     
T Consensus         6 ~~~~~lfV~nL~~~~t~---~~l~~~F~~~g--~v~~v~i~~d-------------------------------------   43 (99)
T d1whwa_           6 SGSGRLFVRNLSYTSSE---EDLEKLFSAYG--PLSELHYPID-------------------------------------   43 (99)
T ss_dssp             CSCEEEEEECCCTTCCH---HHHHHHHHTTS--CEEEEECCCC-------------------------------------
T ss_pred             CCCCEEEEECCCCcCCH---HHHHHHHHhcC--Cceeeeeccc-------------------------------------
Confidence            34568999999998764   77999998763  4555444211                                     


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEP  331 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P  331 (701)
                                   +            ...+..|.|||+|.+..+|+.|.+.+...  ....++|++|-..
T Consensus        44 -------------~------------~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~   88 (99)
T d1whwa_          44 -------------S------------LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK   88 (99)
T ss_dssp             -------------T------------TTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred             -------------c------------cccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence                         0            01235689999999999999999876543  2345667777543

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.38  E-value=0.011  Score=46.61  Aligned_cols=29  Identities=10%  Similarity=0.343  Sum_probs=23.4

Q ss_pred             CCCcceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780          182 PNPSHFTVLVRAVPWSAEQSYSESVKEFFMKY  213 (701)
Q Consensus       182 ~~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~  213 (701)
                      ..|.++||.|.|||.+..+   +.|+++|+++
T Consensus         4 ~~pP~~tl~V~nLp~~~t~---~~l~~~f~~~   32 (83)
T d2b0ga1           4 EQPPNQILFLTNLPEETNE---MMLSMLFNQF   32 (83)
T ss_dssp             CCSCCSEEEEESCCTTCCH---HHHHHHHTTS
T ss_pred             CCCCCCEEEEECCCCCCCH---HHHHhhhccC
Confidence            4456789999999998764   6789999876

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.0048  Score=51.71  Aligned_cols=35  Identities=26%  Similarity=0.109  Sum_probs=27.6

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                      +.|||+|.+..+|+.|.+.++...  ...+.++.||.
T Consensus        47 g~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~   83 (111)
T d1whxa_          47 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             ceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCC
Confidence            689999999999999999877553  34566777754

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.013  Score=46.74  Aligned_cols=38  Identities=18%  Similarity=0.131  Sum_probs=30.9

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPND  333 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~D  333 (701)
                      +.|||+|.+..+|..|.+.++...  ...+.|+.|+.+..
T Consensus        45 ~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~~~~   84 (86)
T d2cpja1          45 GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS   84 (86)
T ss_dssp             TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred             ceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCcCC
Confidence            689999999999999999876553  34677889987763

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0084  Score=47.09  Aligned_cols=36  Identities=17%  Similarity=0.186  Sum_probs=26.4

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      +..|.|||+|.+..+|+.|.+.++...  ...+.|+.|
T Consensus        41 ~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a   78 (81)
T d2ghpa1          41 TSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS   78 (81)
T ss_dssp             --CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             cccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            356899999999999999998776653  334556665

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.014  Score=47.37  Aligned_cols=36  Identities=22%  Similarity=0.156  Sum_probs=27.1

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCC--------CCceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSEN--------PMLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--------p~~~~v~~A  328 (701)
                      +..|.|||+|.+..+|..|.+.+.+..        ...+.++.|
T Consensus        48 ~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a   91 (98)
T d1x4ha1          48 HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLA   91 (98)
T ss_dssp             CBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECC
T ss_pred             cccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEEEC
Confidence            346899999999999999998776432        124567766

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0075  Score=48.64  Aligned_cols=40  Identities=23%  Similarity=0.178  Sum_probs=30.6

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCCCe
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPNDV  334 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~DI  334 (701)
                      .|.|||+|++..+|..|.+.++...  ...+.++.|=...|+
T Consensus        46 ~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~~~~~   87 (91)
T d1nu4a_          46 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI   87 (91)
T ss_dssp             TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred             CCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeCCCchh
Confidence            5799999999999999998876542  345678888555553

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.0096  Score=46.48  Aligned_cols=37  Identities=14%  Similarity=0.058  Sum_probs=27.4

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                      +..|.|||+|++..+|+.|.+.++...  ...+.++.|.
T Consensus        39 ~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_          39 RSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             CSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             ccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            456899999999999999998776542  2345566553

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0062  Score=47.88  Aligned_cols=74  Identities=15%  Similarity=0.064  Sum_probs=52.3

Q ss_pred             eEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcchh
Q 039780          188 TVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNS  267 (701)
Q Consensus       188 TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~~  267 (701)
                      ++.|.|||.+..+   +.|+++|+++  |.+.++.+.+|-                                        
T Consensus         2 slfV~nL~~~~te---~~l~~~F~~~--G~i~~v~i~~d~----------------------------------------   36 (80)
T d1cvja1           2 SLYVGDLHPDVTE---AMLYEKFSPA--GPILSIRVCRDM----------------------------------------   36 (80)
T ss_dssp             EEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT----------------------------------------
T ss_pred             EEEEeCCCCcCCH---HHHHHHHHHh--CCEeEEEEEecc----------------------------------------
Confidence            6899999998764   7799999887  356666664430                                        


Q ss_pred             hhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCCC--CceEEeeC
Q 039780          268 FEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSENP--MLWVTEMA  328 (701)
Q Consensus       268 y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~p--~~~~v~~A  328 (701)
                                            ..+++.|.|||+|.+..+|..|.+.++...-  ..+.+++|
T Consensus        37 ----------------------~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a   77 (80)
T d1cvja1          37 ----------------------ITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS   77 (80)
T ss_dssp             ----------------------TTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEEC
T ss_pred             ----------------------cccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence                                  0023458999999999999999987665432  23455554

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.019  Score=46.28  Aligned_cols=77  Identities=17%  Similarity=0.248  Sum_probs=55.7

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      ....++|.|.|||.+..+   +.|+++|+++.  .|.++.+.+|                                    
T Consensus         8 ~~~~~~l~v~nLp~~~t~---~~L~~~F~~~G--~v~~v~~~~~------------------------------------   46 (93)
T d2cq3a1           8 KSTPKRLHVSNIPFRFRD---PDLRQMFGQFG--KILDVEIIFN------------------------------------   46 (93)
T ss_dssp             SCCCCEEEEESCCTTCCH---HHHHHHGGGTS--CEEEEEEECC------------------------------------
T ss_pred             CCCCCEEEEECCCCCCCH---HHHHHHHhhcc--eeeecccccc------------------------------------
Confidence            345679999999998764   78999999874  5555554321                                    


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                   +               ....|.|||+|.+..+|..|.+.++...  ...+.|+.|
T Consensus        47 -------------~---------------~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A   86 (93)
T d2cq3a1          47 -------------E---------------RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA   86 (93)
T ss_dssp             -------------T---------------TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             -------------c---------------cCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence                         0               1134799999999999999998776542  345667776

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0095  Score=49.28  Aligned_cols=79  Identities=16%  Similarity=0.253  Sum_probs=54.1

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      .+...+|.|.|||.+..+   +.|+++|+++  |.+.++.+++|                           +        
T Consensus         7 d~~~~~lfV~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~d---------------------------~--------   46 (103)
T d2cqda1           7 DTTFTKIFVGGLPYHTTD---ASLRKYFEGF--GDIEEAVVITD---------------------------R--------   46 (103)
T ss_dssp             SCSSSEEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEESCC---------------------------S--------
T ss_pred             CCCCcEEEEeCCCCcCcH---HHHHHHHhhc--ccccceecccc---------------------------c--------
Confidence            344567999999998764   7799999876  45666665322                           0        


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC-CCCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE-NPMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~-~p~~~~v~~A  328 (701)
                                                 ...+..|.|||+|.+..+|+.|.+..... ....+.|+.|
T Consensus        47 ---------------------------~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~a   86 (103)
T d2cqda1          47 ---------------------------QTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA   86 (103)
T ss_dssp             ---------------------------SSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred             ---------------------------cccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence                                       01244689999999999999998765321 2234566666

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.015  Score=48.78  Aligned_cols=75  Identities=17%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCc
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGA  264 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~  264 (701)
                      ..+||.|.|||.+..+   +.|+++|+++  |.|.++.+..+                                      
T Consensus         6 ~~r~l~V~nLp~~~te---~~l~~~F~~~--G~v~~i~~~~~--------------------------------------   42 (114)
T d2f9da1           6 VNRILYIRNLPYKITA---EEMYDIFGKY--GPIRQIRVGNT--------------------------------------   42 (114)
T ss_dssp             CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEECS--------------------------------------
T ss_pred             CCCEEEEECCCCCCCH---HHHHHHHhhc--CCeEeeccccc--------------------------------------
Confidence            4689999999998754   7799999987  34555443110                                      


Q ss_pred             chhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCC
Q 039780          265 PNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAP  329 (701)
Q Consensus       265 ~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP  329 (701)
                                                 .+..|.|||+|.+..+|..|.+.++...  ...+.|+.|.
T Consensus        43 ---------------------------~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~   82 (114)
T d2f9da1          43 ---------------------------PETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYN   82 (114)
T ss_dssp             ---------------------------TTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             ---------------------------CCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence                                       1123799999999999999998876553  3456676664

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.018  Score=46.93  Aligned_cols=73  Identities=15%  Similarity=0.186  Sum_probs=53.0

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcc
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFC  262 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~  262 (701)
                      .+...||.|.|||.+..+   +.|+++|+++.  .+.++.+.+                                     
T Consensus        15 ~~~~~~l~v~nL~~~~te---~~L~~~F~~fG--~i~~v~i~~-------------------------------------   52 (96)
T d1x4ga1          15 SPKNCTVYCGGIASGLTD---QLMRQTFSPFG--QIMEIRVFP-------------------------------------   52 (96)
T ss_dssp             CSSCCEEEEECCSSCCCH---HHHHHHHHHHS--CEEEEEEET-------------------------------------
T ss_pred             CCCCCEEEEcCCCCCCCH---HHHHHHHHHhC--CceEEEEEe-------------------------------------
Confidence            355689999999998754   77999998873  454544320                                     


Q ss_pred             CcchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          263 GAPNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       263 ~~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                                     ..|.|||+|.+..+|..|.+.+....  ...+.++.|
T Consensus        53 -------------------------------~kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~a   89 (96)
T d1x4ga1          53 -------------------------------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG   89 (96)
T ss_dssp             -------------------------------TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             -------------------------------cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence                                           13699999999999999998776552  344566666

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.018  Score=46.57  Aligned_cols=81  Identities=23%  Similarity=0.304  Sum_probs=55.9

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCG  263 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~  263 (701)
                      .+..+|.|.|||.+..+   +.|+++|+++  |.+.++.+.++                            +        
T Consensus         6 ~~~~~l~V~nLp~~~~e---~~l~~~F~~~--G~i~~v~i~~~----------------------------~--------   44 (94)
T d2cpha1           6 QTTSKILVRNIPFQANQ---REIRELFSTF--GELKTVRLPKK----------------------------M--------   44 (94)
T ss_dssp             SCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCCC----------------------------C--------
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHHHHHh--CCceEEEEEec----------------------------c--------
Confidence            34578999999998764   7799999886  35555554211                            0        


Q ss_pred             cchhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC---CCCceEEeeCCC
Q 039780          264 APNSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE---NPMLWVTEMAPE  330 (701)
Q Consensus       264 ~~~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~---~p~~~~v~~AP~  330 (701)
                                               ...++..|.|||+|.+..+|..|.+.+.+.   ....+.|+.|-.
T Consensus        45 -------------------------~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~   89 (94)
T d2cpha1          45 -------------------------TGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS   89 (94)
T ss_dssp             -------------------------SSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred             -------------------------ccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEcCC
Confidence                                     001345689999999999999999877332   234567777743

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.012  Score=46.40  Aligned_cols=36  Identities=17%  Similarity=0.209  Sum_probs=27.6

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEe
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVH  225 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~  225 (701)
                      ..+||.|.|||.+..+   +.|+++|+++.  .+.++.+.+
T Consensus         8 ~~~~l~V~nL~~~~te---~~l~~~F~~~G--~i~~v~i~~   43 (83)
T d2cqca1           8 PNCCLGVFGLSLYTTE---RDLREVFSKYG--PIADVSIVY   43 (83)
T ss_dssp             GGGCEEEESCCSSCCH---HHHHHHHHTTS--CEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHHHHhC--CCccccccc
Confidence            3579999999998764   78999998874  566666643

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.014  Score=45.20  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=19.3

Q ss_pred             cCCceEEEEeCCHHHHHHHHHH
Q 039780          293 KENAVAFVCFKTRYAAVVAAEI  314 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~  314 (701)
                      +..|.|||+|.+..+|..|.+.
T Consensus        39 ~~kg~afV~f~~~~~a~~Al~~   60 (75)
T d1hd0a_          39 RSRGFGFVLFKESESVDKVMDQ   60 (75)
T ss_dssp             BCCSEEEEEESSHHHHHHHHHT
T ss_pred             CcCceEEEEECCHHHHHHHHhc
Confidence            4568999999999999999885

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.015  Score=46.10  Aligned_cols=28  Identities=25%  Similarity=0.235  Sum_probs=23.3

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccCC
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSEN  319 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~  319 (701)
                      .++.|.|||.|.++.+|..|.+.++...
T Consensus        48 g~~~G~afV~f~~~e~a~~Ai~~l~~~~   75 (86)
T d2cqpa1          48 GMPTGEAMVAFESRDEATAAVIDLNDRP   75 (86)
T ss_dssp             SCEEEEEEEEESCHHHHHHHHHHTTTCE
T ss_pred             CCcceEEEEEEcCcHHHHHHHHHcCCCE
Confidence            3557899999999999999998776553

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.85  E-value=0.012  Score=51.45  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=55.9

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP  265 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~  265 (701)
                      .+||.|.|||.+..+   +.|+++|+++  |.+.++.+++|-                           .          
T Consensus        42 ~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~d~---------------------------~----------   79 (139)
T d1u6fa1          42 LRNLMVNYIPTTVDE---VQLRQLFERY--GPIESVKIVCDR---------------------------E----------   79 (139)
T ss_dssp             TSEEEEESCSTTCCH---HHHHHHHHHH--SCEEEEEEEEET---------------------------T----------
T ss_pred             CCEEEEeCCCCCCCH---HHHHHHHHhh--cccccccccccc---------------------------c----------
Confidence            478999999998764   7899999987  467677765430                           0          


Q ss_pred             hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                                               ..+..|.|||+|.+..+|..|.+.+...  ....+.|+.|
T Consensus        80 -------------------------t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a  119 (139)
T d1u6fa1          80 -------------------------TRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA  119 (139)
T ss_dssp             -------------------------TTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred             -------------------------cccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence                                     0123479999999999999999877543  3345777776

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.014  Score=45.48  Aligned_cols=32  Identities=16%  Similarity=0.511  Sum_probs=24.0

Q ss_pred             eEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780          188 TVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV  224 (701)
Q Consensus       188 TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~  224 (701)
                      .|.|.|||.+..+   +.|+++|+++  |.+.++.+.
T Consensus         2 klfV~nLp~~~te---~~l~~~F~~~--G~i~~v~i~   33 (77)
T d1uawa_           2 KMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVM   33 (77)
T ss_dssp             CEEEESCCSSCCS---HHHHHHHTTT--SCCCCEEEE
T ss_pred             EEEEeCCCCcCCH---HHHHHHHHHh--CCcceeeee
Confidence            4789999998765   6789999876  356666664

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.019  Score=45.45  Aligned_cols=76  Identities=16%  Similarity=0.186  Sum_probs=52.6

Q ss_pred             EEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcchhh
Q 039780          189 VLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAPNSF  268 (701)
Q Consensus       189 VlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~~~y  268 (701)
                      +.|.|||.+..+   +.|+++|+++  |.+.++.+.++-                           .+            
T Consensus         1 LfV~nLp~~~t~---~~l~~~F~~~--G~v~~v~i~~~~---------------------------~~------------   36 (85)
T d2cpfa1           1 LFIKNLNFSTTE---ETLKGVFSKV--GAIKSCTISKKK---------------------------NK------------   36 (85)
T ss_dssp             EEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEEE---------------------------CT------------
T ss_pred             CEEcCCCCCCCH---HHHHHHHHHh--CCccccceeccc---------------------------cc------------
Confidence            579999998764   7799999886  567777765330                           00            


Q ss_pred             hhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          269 EILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       269 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                                          ....++.|.|||+|.+..+|..|.+.++...  ...+.|+.|
T Consensus        37 --------------------~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a   78 (85)
T d2cpfa1          37 --------------------AGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS   78 (85)
T ss_dssp             --------------------TCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred             --------------------ccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence                                0002235799999999999999998876542  344667766

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.037  Score=44.91  Aligned_cols=33  Identities=15%  Similarity=0.135  Sum_probs=26.4

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCCC----CceEEeeC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSENP----MLWVTEMA  328 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~p----~~~~v~~A  328 (701)
                      +.|||+|.+..+|..|.+.++...-    ..+.++.|
T Consensus        54 ~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~a   90 (97)
T d1whya_          54 SFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA   90 (97)
T ss_dssp             CCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred             cEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeC
Confidence            5899999999999999988776532    35777776

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.016  Score=46.43  Aligned_cols=35  Identities=26%  Similarity=0.165  Sum_probs=26.4

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAP  329 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP  329 (701)
                      .|.|||+|.+..+|+.|.+.++..  ....+.|+.|-
T Consensus        48 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~   84 (89)
T d1cvja2          48 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK   84 (89)
T ss_dssp             CSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECC
T ss_pred             cceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            479999999999999999876543  23456677763

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.011  Score=46.98  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=25.7

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHM  223 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i  223 (701)
                      +.+||.|.|||.+..+   +.|+++|+++.  .+.++.+
T Consensus         5 ~~rtvfV~nlp~~~te---~~l~~~F~~~G--~v~~v~l   38 (85)
T d1zh5a2           5 KNRSVYIKGFPTDATL---DDIKEWLEDKG--QVLNIQM   38 (85)
T ss_dssp             HTTEEEEECCCTTCCH---HHHHHHHTTSC--CEEEEEE
T ss_pred             CcCEEEEECCCCCCCH---HHHHHHHHHhc--cccccee
Confidence            4589999999998764   77999998763  4555544

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.034  Score=44.94  Aligned_cols=36  Identities=19%  Similarity=0.036  Sum_probs=28.2

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                      .+.|||+|.+..+|..|.+.++...  ...+.|+.|-+
T Consensus        53 ~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~   90 (95)
T d1x4aa1          53 PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS   90 (95)
T ss_dssp             SCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeccC
Confidence            4789999999999999998876553  34567777754

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.021  Score=47.07  Aligned_cols=77  Identities=10%  Similarity=0.218  Sum_probs=53.9

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEEecchhHHHHHHHHHHHHHHhcccccCCCCCCCCCCCccCcc
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMVHRSSRVQRLMNDAEKICRVFKGVSAEQKSKPCLLPCFCGAP  265 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~~~~~~L~~L~~~~e~~~~~lk~~~~~~~~rp~~~~~~~~~~  265 (701)
                      .++|.|.|||.+..+   +.|+++|.++  |.+.++.+.+|-                                      
T Consensus        20 ~~~lfVgnLp~~~te---~~L~~~F~~~--G~i~~~~i~~d~--------------------------------------   56 (103)
T d1x4ba1          20 FRKLFIGGLSFETTE---ESLRNYYEQW--GKLTDCVVMRDP--------------------------------------   56 (103)
T ss_dssp             HTEEEEECCTTCCCH---HHHHHHHTSS--CCCSEEEEECCT--------------------------------------
T ss_pred             CCEEEEeCCCCcCCH---HHHHHHHHhh--Ccccceeecccc--------------------------------------
Confidence            479999999998764   7899999986  567777764330                                      


Q ss_pred             hhhhhhhcCccchhhhhhhhhhhhhhccCCceEEEEeCCHHHHHHHHHHhccC-CCCceEEeeCC
Q 039780          266 NSFEILSNEPDNVRGNIGLDISNLATEKENAVAFVCFKTRYAAVVAAEILHSE-NPMLWVTEMAP  329 (701)
Q Consensus       266 ~~y~~~~~~~~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~-~p~~~~v~~AP  329 (701)
                                              ...+..|.|||+|.+..+|..|.+...+. +...+.|+.|-
T Consensus        57 ------------------------~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~i~V~~a~   97 (103)
T d1x4ba1          57 ------------------------ASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV   97 (103)
T ss_dssp             ------------------------TTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred             ------------------------cCCCccCeEEEEECCHHHHHHHHHhCCCeECCEEEEEEECc
Confidence                                    01234689999999999999887642211 22345666664

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.045  Score=43.38  Aligned_cols=34  Identities=18%  Similarity=0.125  Sum_probs=25.9

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCC---CCceEEeeC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSEN---PMLWVTEMA  328 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~---p~~~~v~~A  328 (701)
                      .+.|||+|.+..+|..|...++...   +..++++.|
T Consensus        48 ~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~s   84 (88)
T d2adca2          48 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS   84 (88)
T ss_dssp             TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred             cceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeC
Confidence            4689999999999999998776542   345666655

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.027  Score=45.61  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=27.5

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccCC----CCceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSEN----PMLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~~----p~~~~v~~A  328 (701)
                      +..|.|||+|.+..+|..|.+.++...    ...+.|++|
T Consensus        43 ~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A   82 (96)
T d2disa1          43 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA   82 (96)
T ss_dssp             TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred             cCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEc
Confidence            456899999999999999998875432    234667765

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.029  Score=45.88  Aligned_cols=40  Identities=13%  Similarity=0.158  Sum_probs=30.9

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC----CCCceEEeeCCCCCCee
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE----NPMLWVTEMAPEPNDVL  335 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~----~p~~~~v~~AP~P~DIi  335 (701)
                      +.|||.|++..+|..|.+.+..+    +...+.|+.|..+.+++
T Consensus        56 ~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~~~~l~   99 (99)
T d1x4fa1          56 SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV   99 (99)
T ss_dssp             TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred             CcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCCcccCC
Confidence            69999999999999998743322    34557888998888764

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.016  Score=44.96  Aligned_cols=30  Identities=17%  Similarity=0.347  Sum_probs=23.2

Q ss_pred             EEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780          189 VLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHM  223 (701)
Q Consensus       189 VlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i  223 (701)
                      |.|.|||.+..+   +.|+++|+++  |.+.++.+
T Consensus         2 lfVgnLp~~~te---~~l~~~F~~~--G~I~~v~i   31 (75)
T d1x0fa1           2 IFVGGLSPDTPE---EKIREYFGGF--GEVESIEL   31 (75)
T ss_dssp             EEEESCCSSCCH---HHHHHHHHHH--SCEEEEEC
T ss_pred             EEEcCCCCCCCH---HHHHHHHHHh--CCcccccc
Confidence            679999998764   7899999987  45656655

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.026  Score=46.05  Aligned_cols=37  Identities=19%  Similarity=0.147  Sum_probs=29.3

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      .+..+.|||+|.+..+|..|.+.+....  ...+.|+.|
T Consensus        55 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a   93 (101)
T d2cpea1          55 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA   93 (101)
T ss_dssp             CSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred             ccccceeeEEecCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            4567999999999999999999877653  345677776

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.044  Score=45.27  Aligned_cols=33  Identities=15%  Similarity=0.058  Sum_probs=25.7

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                      |.|||+|.+..+|..|.+.+...  ....+.++.|
T Consensus        41 g~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s   75 (109)
T d2adca1          41 ENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS   75 (109)
T ss_dssp             CCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred             ceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            68999999999999999987654  2345566665

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.03  Score=42.90  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=24.6

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                      +..+.|||+|++..+|+.|.+ +..+  +...+.|+.|
T Consensus        39 ~~~~~afV~F~~~~~a~~al~-~~~~~l~gr~i~V~~A   75 (75)
T d2msta_          39 RHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             TSCCEEEEECSCHHHHHHHHH-CSSCCBTTBCCEEEEC
T ss_pred             ccCceeEEEECCHHHHHHHHh-cCCCEECCeEEEEEEC
Confidence            456899999999999999987 4333  2234556554

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.022  Score=43.96  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             eEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780          188 TVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV  224 (701)
Q Consensus       188 TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~  224 (701)
                      ||.|.|||.+..+   +.|+++|+++  |.+.++.+.
T Consensus         2 tv~V~nlp~~~t~---~~l~~~F~~~--G~I~~v~~~   33 (75)
T d2ghpa2           2 TVLVKNLPKSYNQ---NKVYKYFKHC--GPIIHVDVA   33 (75)
T ss_dssp             EEEEEEECTTCCH---HHHHHHHGGG--SCEEEEEEE
T ss_pred             EEEEECCCCCCCH---HHHHHHHhcC--CceEEEEEE
Confidence            8999999998754   7899999986  455555553

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.05  Score=44.57  Aligned_cols=25  Identities=32%  Similarity=0.689  Sum_probs=21.2

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKY  213 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~  213 (701)
                      .+||.|.|||.+..+   +.|+++|+++
T Consensus        15 ~~~v~V~nLp~~~te---~~l~~~f~~~   39 (104)
T d1wi8a_          15 PYTAFLGNLPYDVTE---ESIKEFFRGL   39 (104)
T ss_dssp             CEEEEEESCCSSCCH---HHHHHHTTTS
T ss_pred             CCEEEEeCCCCcCCH---HHHHHHHHHh
Confidence            489999999998764   7799999875

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.024  Score=46.52  Aligned_cols=34  Identities=12%  Similarity=0.172  Sum_probs=26.7

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV  224 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~  224 (701)
                      .+||.|.|||.+..+   +.|+++|+.+  |.|.++.+.
T Consensus        18 ~~tifV~nL~~~~te---~~l~~~F~~~--G~V~~v~i~   51 (101)
T d2cq4a1          18 ARTVFCMQLAARIRP---RDLEDFFSAV--GKVRDVRII   51 (101)
T ss_dssp             HTEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEC
T ss_pred             CCEEEEECCCCCCCH---HHHHHHHcCC--CeEEEEEee
Confidence            579999999998764   7899999975  466666653

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.035  Score=45.33  Aligned_cols=39  Identities=18%  Similarity=0.253  Sum_probs=29.1

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCC
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPE  330 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~  330 (701)
                      ++..+.|||.|.+..+|+.|.+.++...  ...+.|+.|=+
T Consensus        57 g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~   97 (102)
T d2cpxa1          57 GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN   97 (102)
T ss_dssp             SSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred             ccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCC
Confidence            3567899999999999999998876543  23456666643

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.096  Score=41.14  Aligned_cols=34  Identities=29%  Similarity=0.304  Sum_probs=26.8

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                      .|.|||+|.+..+|..|.+.++..  ....+.|+.|
T Consensus        44 rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~a   79 (86)
T d2cpda1          44 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA   79 (86)
T ss_dssp             SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred             cEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            479999999999999999887654  2345667776

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.021  Score=45.56  Aligned_cols=27  Identities=22%  Similarity=0.370  Sum_probs=22.0

Q ss_pred             cceeEEEeCCCCCChhhhHHHHHHHHhhhC
Q 039780          185 SHFTVLVRAVPWSAEQSYSESVKEFFMKYY  214 (701)
Q Consensus       185 s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~  214 (701)
                      ..+||.|.|||.+..+   +.|+++|+++.
T Consensus         4 ~s~~lfV~nLp~~~te---~~L~~~F~~~G   30 (88)
T d1wf0a_           4 GSSGVFVGRCTGDMTE---DELREFFSQYG   30 (88)
T ss_dssp             CCCEEEEESCCSSSCH---HHHHHHSTTTS
T ss_pred             CCCEEEEeCCCCCCCH---HHHHHHHHHcC
Confidence            4679999999998764   78999998763

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=94.64  E-value=0.016  Score=46.75  Aligned_cols=36  Identities=17%  Similarity=0.015  Sum_probs=25.8

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                      ++..|.|||+|.+..+|+.|.+ +...  ....+.|+.|
T Consensus        51 g~~kg~afv~F~~~e~a~~Al~-~~g~~~~g~~i~V~~a   88 (91)
T d1fjeb1          51 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP   88 (91)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred             CCccEEeEEeeCCHHHHHHHHh-cCCcEECCEEEEEEec
Confidence            3456899999999999999987 4433  2334556555

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.049  Score=42.11  Aligned_cols=33  Identities=12%  Similarity=0.269  Sum_probs=24.5

Q ss_pred             ceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEE
Q 039780          186 HFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHM  223 (701)
Q Consensus       186 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i  223 (701)
                      .++|.|.|||.+..+   +.|+++|+++.  .+.++.+
T Consensus         2 ~r~lfV~nLp~~~te---~~l~~~F~~~G--~i~~~~~   34 (79)
T d1l3ka2           2 VKKIFVGGIKEDTEE---HHLRDYFEQYG--KIEVIEI   34 (79)
T ss_dssp             CSEEEEECCTTTCCH---HHHHHHHTTTS--CEEEEEE
T ss_pred             CCEEEECCCCCcCCH---HHHHHHHHHhc--ccccccc
Confidence            478999999998764   77999999863  4444443

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.087  Score=41.66  Aligned_cols=34  Identities=15%  Similarity=0.090  Sum_probs=24.6

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC----CCCceEEeeCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE----NPMLWVTEMAP  329 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~----~p~~~~v~~AP  329 (701)
                      +.|||+|.+..+|..|.+..+..    +...+.++.|.
T Consensus        45 ~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk   82 (88)
T d2cq1a1          45 NQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN   82 (88)
T ss_dssp             TEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred             eEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECC
Confidence            68999999999999998765432    22345666664

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.041  Score=41.77  Aligned_cols=26  Identities=31%  Similarity=0.301  Sum_probs=21.8

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                      +..|.|||+|.+..+|+.|.+.+...
T Consensus        38 ~~~g~afV~f~~~~~A~~Ai~~lng~   63 (72)
T d1x4ea1          38 KCKGYGFVDFDSPSAAQKAVTALKAS   63 (72)
T ss_dssp             SCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cccceeEEEECCHHHHHHHHHHhCCC
Confidence            45689999999999999999876543

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.26  E-value=0.14  Score=41.90  Aligned_cols=27  Identities=22%  Similarity=0.153  Sum_probs=21.6

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKY  213 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~  213 (701)
                      +.+.+|.|+|||.+..+   +.|.++|+.+
T Consensus        13 ~ps~~l~v~nlp~~~te---~~l~~~F~~f   39 (104)
T d1wexa_          13 SVSPVVHVRGLCESVVE---ADLVEALEKF   39 (104)
T ss_dssp             CCCSEEEEESCCSSCCH---HHHHHHHTTT
T ss_pred             CCCCEEEEeCCCCCCCH---HHHHHhhhhc
Confidence            44679999999998754   6788888875

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.99  E-value=0.034  Score=44.38  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=21.7

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                      .+.+.|||+|.+..+|..|.+.+...
T Consensus        54 ~~~g~aFV~f~~~~~A~~Ai~~lng~   79 (89)
T d2cpia1          54 GPSASAYVTYIRSEDALRAIQCVNNV   79 (89)
T ss_dssp             CCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred             CcceEEEEecccchhHHHHHHHhCCC
Confidence            34689999999999999999876543

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.092  Score=42.73  Aligned_cols=26  Identities=8%  Similarity=0.098  Sum_probs=22.0

Q ss_pred             CCceEEEEeCCHHHHHHHHHHhccCC
Q 039780          294 ENAVAFVCFKTRYAAVVAAEILHSEN  319 (701)
Q Consensus       294 ~~~~aFVtF~s~~~A~~a~q~~~~~~  319 (701)
                      ..|.|||+|.+..+|+.|.+.++...
T Consensus        58 ~~g~afV~f~~~~~A~~Ai~~lng~~   83 (101)
T d1x5oa1          58 SRGVGFARMESTEKCEAVIGHFNGKF   83 (101)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred             cccceeEEeCCHHHHHHHHHHhCCCE
Confidence            45799999999999999998776653

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.11  Score=42.88  Aligned_cols=34  Identities=15%  Similarity=0.085  Sum_probs=25.6

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccCCC----CceEEeeC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSENP----MLWVTEMA  328 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~~p----~~~~v~~A  328 (701)
                      .|.|||+|.+..+|+.|.+.+.....    ..+.+..+
T Consensus        45 ~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s   82 (108)
T d2adba1          45 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS   82 (108)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEEC
T ss_pred             CCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEec
Confidence            37899999999999999988776532    34555544

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.058  Score=44.11  Aligned_cols=28  Identities=21%  Similarity=0.494  Sum_probs=22.4

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhh
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKY  213 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~  213 (701)
                      ....+||.|+|||.+..+   +.|+++|+.+
T Consensus        12 ~~~~~~v~v~nLp~~~te---~dl~~~F~~~   39 (102)
T d1weza_          12 STTGHCVHMRGLPYRATE---NDIYNFFSPL   39 (102)
T ss_dssp             CSSSCEEEEESCCTTCCH---HHHHHSSCSC
T ss_pred             CCCCCEEEEeCCCCcCCH---HHHHHHHhcc
Confidence            345689999999998764   7799999864

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.097  Score=41.31  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=20.2

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSE  318 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~  318 (701)
                      |.|||+|.+..+|+.|.+.++..
T Consensus        36 g~afV~f~~~~~a~~Ai~~l~g~   58 (87)
T d3begb1          36 GTGVVEFVRKEDMTYAVRKLDNT   58 (87)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTC
T ss_pred             ceeeEEeCCHHHHHHHHHHhCCC
Confidence            68999999999999999876654

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.24  Score=40.33  Aligned_cols=28  Identities=21%  Similarity=0.402  Sum_probs=22.4

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhC
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYY  214 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~  214 (701)
                      .++.+|.|+|||.+..+   +.|++||+.+.
T Consensus        13 ~~~~~v~v~nLP~~~te---~dI~~~F~~~g   40 (104)
T d1wg5a_          13 ANDGFVRLRGLPFGCSK---EEIVQFFSGLE   40 (104)
T ss_dssp             SCCCEEEEESCCTTCCH---HHHHHHTTTCC
T ss_pred             CCCcEEEEeCCCCCCCH---HHHHHHHHhcC
Confidence            45568999999998764   77999998753

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.67  E-value=0.24  Score=39.09  Aligned_cols=38  Identities=13%  Similarity=0.058  Sum_probs=27.3

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCC----CCceEEeeCCCCCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSEN----PMLWVTEMAPEPND  333 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~----p~~~~v~~AP~P~D  333 (701)
                      +.|||.|.+..+|..|.+.+....    ...+.|+.|..+.+
T Consensus        46 ~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~~~~~   87 (89)
T d1x4da1          46 NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR   87 (89)
T ss_dssp             SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred             eEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEECCCccc
Confidence            479999999999999988664432    34466777765543

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.39  E-value=0.13  Score=39.40  Aligned_cols=39  Identities=21%  Similarity=0.226  Sum_probs=31.1

Q ss_pred             cCCceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCCC
Q 039780          293 KENAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPEP  331 (701)
Q Consensus       293 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~P  331 (701)
                      +..|.|||+|++..+|+.|.+.++..  +...+.|+.||..
T Consensus        31 ~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1          31 KYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred             ccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence            34689999999999999999987754  3456788898754

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.2  Score=40.63  Aligned_cols=29  Identities=17%  Similarity=0.312  Sum_probs=22.9

Q ss_pred             CCcceeEEEeCCCCCChhhhHHHHHHHHhhhC
Q 039780          183 NPSHFTVLVRAVPWSAEQSYSESVKEFFMKYY  214 (701)
Q Consensus       183 ~~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~  214 (701)
                      ..+..||.|+|||.+..+   +.|++||+++.
T Consensus         5 ~~~~~~v~v~nLp~~~t~---~~l~~~F~~~g   33 (103)
T d2cpya1           5 NSAKVCAHITNIPFSITK---MDVLQFLEGIP   33 (103)
T ss_dssp             CSCCCEEEEESCCTTSCH---HHHHHHTTTSC
T ss_pred             CCCceEEEEeCCCCCCCH---HHHhhhhcccc
Confidence            345689999999998764   77899998653

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.3  Score=43.64  Aligned_cols=36  Identities=11%  Similarity=0.277  Sum_probs=27.1

Q ss_pred             CcceeEEEeCCCCCChhhhHHHHHHHHhhhCCCCcceEEEE
Q 039780          184 PSHFTVLVRAVPWSAEQSYSESVKEFFMKYYAPSYLSHHMV  224 (701)
Q Consensus       184 ~s~~TVlV~~IP~~~~~~~~~~l~~~F~~~~~~~v~~v~i~  224 (701)
                      ...+||.|.|||.+..+   +.|+++|+.+  |.+..+.+.
T Consensus        95 ~~~~~i~V~~lp~~~te---~~L~~~f~~~--G~v~~~~i~  130 (183)
T d1u1qa_          95 LTVKKIFVGGIKEDTEE---HHLRDYFEQY--GKIEVIEIM  130 (183)
T ss_dssp             CCCSEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEE
T ss_pred             cccceeEEccCCCcCCH---HHHhhhhccC--Cceeeeeee
Confidence            34579999999997754   7899999886  456666654

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.85  E-value=0.29  Score=37.61  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=27.2

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMA  328 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~A  328 (701)
                      .+.|||+|++..+|..|.+.+...  ....++|+.|
T Consensus        39 ~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a   74 (79)
T d2bz2a1          39 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA   74 (79)
T ss_dssp             TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred             CCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            469999999999999999887654  3456777776

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.59  E-value=0.26  Score=39.67  Aligned_cols=37  Identities=22%  Similarity=0.194  Sum_probs=29.0

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeCCCCC
Q 039780          296 AVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMAPEPN  332 (701)
Q Consensus       296 ~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~AP~P~  332 (701)
                      +.|||+|++..+|+.|.+.+....  ...+.|+.|.+|+
T Consensus        51 g~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~   89 (98)
T d1wf2a_          51 GFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPK   89 (98)
T ss_dssp             EEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTSCC
T ss_pred             CeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            689999999999999999876543  3457788886543

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.32  E-value=0.32  Score=38.20  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=29.1

Q ss_pred             CceEEEEeCCHHHHHHHHHHhccC--CCCceEEeeCCC
Q 039780          295 NAVAFVCFKTRYAAVVAAEILHSE--NPMLWVTEMAPE  330 (701)
Q Consensus       295 ~~~aFVtF~s~~~A~~a~q~~~~~--~p~~~~v~~AP~  330 (701)
                      .+.|||+|.+..+|+.|.+.++..  +...+.|+.||.
T Consensus        40 kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~   77 (88)
T d1wg1a_          40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT   77 (88)
T ss_dssp             GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            369999999999999999887765  345677888864

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.04  E-value=1  Score=34.46  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=27.9

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      .+..|.|||+|.+..+|..|.+.++...  ...+.++.|
T Consensus        38 g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a   76 (83)
T d1x5ta1          38 GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA   76 (83)
T ss_dssp             CSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred             cccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEe
Confidence            3456899999999999999998765442  334667766

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.73  E-value=1.3  Score=35.26  Aligned_cols=37  Identities=16%  Similarity=0.074  Sum_probs=28.6

Q ss_pred             ccCCceEEEEeCCHHHHHHHHHHhccCC--CCceEEeeC
Q 039780          292 EKENAVAFVCFKTRYAAVVAAEILHSEN--PMLWVTEMA  328 (701)
Q Consensus       292 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--p~~~~v~~A  328 (701)
                      +++.|.|||+|++..+|..|.+.+....  ...+.++.+
T Consensus        54 ~~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~   92 (99)
T d2dita1          54 RHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW   92 (99)
T ss_dssp             TCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred             CCCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEe
Confidence            4567899999999999999999887653  344556665