Citrus Sinensis ID: 039784

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKLALVTFLLVSLVLTSTFFEvsmagsdfcdskcavrcskagredrclkycgiccdkchcvpsgtyghkdecpcyrdlknskgkpkcp
Flexible Loop (DISEMBL)
MKLALVTFLLVSLVLTSTFFEVSmagsdfcdsKCAVRCSKAGREDRCLKYCGICCDKCHCVPSgtyghkdecpcyrdlknskgkpkcp
Low Complexity Region (SEG)
MKLAlvtfllvslvltstffEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP
Disordered region (IsUnstruct)
**LALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYR************
Disordered Region (DISOPRED)
**LALVTFLLVSLVLTST**********FCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNS*******
Disordered Region (DISEMBL)
MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDL**********
Disordered Region (DISPRO)
MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKN******C*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q8LFM2	89	Gibberellin-regulated pro	yes	no	1.0	0.988	0.674	4e-28
O80641	87	Gibberellin-regulated pro	no	no	0.988	1.0	0.670	8e-28
Q948Z4	88	Snakin-1 OS=Solanum tuber	N/A	no	1.0	1.0	0.727	4e-26
P86888	63	Peamaclein OS=Prunus pers	N/A	no	0.715	1.0	0.873	5e-26
O82328	108	Gibberellin-regulated pro	no	no	0.681	0.555	0.683	3e-17
P47926	96	Protein RSI-1 OS=Solanum	N/A	no	0.977	0.895	0.372	2e-12
P27057	112	Protein GAST1 OS=Solanum	N/A	no	0.670	0.526	0.525	1e-11
P46690	106	Gibberellin-regulated pro	no	no	0.954	0.792	0.365	3e-11
Q6NMQ7	101	Gibberellin-regulated pro	no	no	1.0	0.871	0.356	3e-11
Q8GWK5	119	Gibberellin-regulated pro	no	no	0.670	0.495	0.491	2e-09

>sp|Q8LFM2|GASAA_ARATH Gibberellin-regulated protein 10 OS=Arabidopsis thaliana GN=GASA10 PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 71/89 (79%), Gaps = 1/89 (1%)

Query: 1  MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKC-H 59
          MK   V  L++SL++TS+ F +S A S  C  KC VRCSKAGR+DRCLKYC ICC+KC +
Sbjct: 1  MKFPAVKVLIISLLITSSLFILSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCNY 60

Query: 60 CVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
          CVPSGTYG+KDECPCYRD+KNSKG  KCP
Sbjct: 61 CVPSGTYGNKDECPCYRDMKNSKGTSKCP 89

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.
Arabidopsis thaliana (taxid: 3702)

>sp|O80641|GASA8_ARATH Gibberellin-regulated protein 8 OS=Arabidopsis thaliana GN=At2g39540 PE=2 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 70/88 (79%), Gaps = 1/88 (1%)

Query: 1  MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
          MKL +V F ++SL+LTS+F  +S A S  C  KC VRCSKAG+ + CLKYC ICC KC+C
Sbjct: 1  MKLVVVQFFIISLLLTSSFSVLSSADSS-CGGKCNVRCSKAGQHEECLKYCNICCQKCNC 59

Query: 61 VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
          VPSGT+GHKDECPCYRD+KNSKG  KCP
Sbjct: 60 VPSGTFGHKDECPCYRDMKNSKGGSKCP 87

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q948Z4|SNAK1_SOLTU Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1

 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 74/88 (84%)

Query: 1  MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
          MKL L+T LLV+LV+T +  + +MAGS FCDSKC +RCSKAG  DRCLKYCGICC++C C
Sbjct: 1  MKLFLLTLLLVTLVITPSLIQTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKC 60

Query: 61 VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
          VPSGTYG+K ECPCYRD KNSKGK KCP
Sbjct: 61 VPSGTYGNKHECPCYRDKKNSKGKSKCP 88

Has an antimicrobial activity. Causes a rapid aggregation of both Gram-positive and Gram-negative bacteria, but the antimicrobial activity is not correlated with the capacity to aggregate bacteria.

Solanum tuberosum (taxid: 4113)

>sp|P86888|PMLN_PRUPE Peamaclein OS=Prunus persica PE=1 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/63 (87%), Positives = 59/63 (93%)

Query: 26 GSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKP 85
          GS FCDSKC VRCSKAG ++RCLKYCGICC+KCHCVPSGTYG+KDECPCYRDLKNSKG P
Sbjct: 1  GSSFCDSKCGVRCSKAGYQERCLKYCGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNP 60

Query: 86 KCP 88
          KCP
Sbjct: 61 KCP 63

Prunus persica (taxid: 3760)

>sp|O82328|GASA7_ARATH Gibberellin-regulated protein 7 OS=Arabidopsis thaliana GN=GASA7 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 46/60 (76%)

Query: 29  FCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
           +C  KC  RC +AG +DRCLKYCGICC  C CVPSGTYG+K EC CYRD  +SKG PKCP
Sbjct: 49  WCGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P47926|RSI1_SOLLC Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 45/86 (52%)

Query: 3  LALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVP 62
          L L++  L+ L  ++     +      C  +C  RCS    +  C+ +C  CC  C CVP
Sbjct: 11 LLLISMFLILLTFSNVVEGYNKLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVP 70

Query: 63 SGTYGHKDECPCYRDLKNSKGKPKCP 88
           G YG+K  CPCY + K  +GKPKCP
Sbjct: 71 KGVYGNKQSCPCYNNWKTQEGKPKCP 96

Solanum lycopersicum (taxid: 4081)

>sp|P27057|GAST1_SOLLC Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 38/59 (64%)

Query: 30  CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
           C  KC  RCSK   +  C+ +C  CC KC CVP+GTYG+K  CPCY + K  +G PKCP
Sbjct: 54  CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112

Solanum lycopersicum (taxid: 4081)

>sp|P46690|GASA4_ARATH Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 5   LVTFLLVSLVLTSTFFEVSMAGSDF---------CDSKCAVRCSKAGREDRCLKYCGICC 55
           +V F+L ++V+ S+   V  +   +         C S+C  RC K      C+ +C  CC
Sbjct: 14  IVLFMLQTMVMASSGSNVKWSQKRYGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCC 73

Query: 56  DKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
            KC CVP G YG+K  C CY + K  +G PKCP
Sbjct: 74  RKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106

Gibberellin-regulated protein involved in the regulation of floral meristem and floral organ identity, and promotion of seed size and weight. May play a role in the promotion of gibberellin responses such as regulation of flowering under short-day conditions, seed germination and inhibition of gibberellin oxidase. Possesses redox activity in E.coli and may function in redox regulation in planta.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMQ7|GASA6_ARATH Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 1   MKLALVTFLLVSLVLTSTFFEVSMAG-------------SDFCDSKCAVRCSKAGREDRC 47
           M   + +FLL++++ T     +S                S  C  +C  RCS       C
Sbjct: 1   MAKLITSFLLLTILFTFVCLTMSKEAEYHPESYGPGSLKSYQCGGQCTRRCSNTKYHKPC 60

Query: 48  LKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
           + +C  CC KC CVP GTYG+K  CPCY + K  +G PKCP
Sbjct: 61  MFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWK5|GASA9_ARATH Gibberellin-regulated protein 9 OS=Arabidopsis thaliana GN=GASA9 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 34/59 (57%)

Query: 30  CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
           C   CA RCSK  R+  C + CG CC KC CVP GT G+   CPCY  ++    K KCP
Sbjct: 61  CGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
445069056	88	GA-stimulated transcript-like protein 6	1.0	1.0	0.840	2e-36
351722324	115	uncharacterized protein LOC100500113 [Gl	1.0	0.765	0.738	3e-31
225458776	88	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.75	5e-31
356564141	88	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.715	2e-30
255626041	88	unknown [Glycine max]	1.0	1.0	0.715	3e-30
224137706	88	predicted protein [Populus trichocarpa]	1.0	1.0	0.727	3e-30
255538122	88	GAST1 protein precursor, putative [Ricin	1.0	1.0	0.738	3e-30
407260765	88	gibberellin-regulated protein [Populus t	1.0	1.0	0.715	1e-29
407260767	88	gibberellin-regulated protein [Populus a	1.0	1.0	0.715	1e-29
388506416	90	unknown [Lotus japonicus]	1.0	0.977	0.744	2e-28

>gi|445069056|gb|AGE15502.1| GA-stimulated transcript-like protein 6 [Gossypium hirsutum]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/88 (84%), Positives = 82/88 (93%)

Query: 1  MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
          MK+ L+ FLLVSL L+S FFEVS+AGSDFCDSKCAVRCSKAG +DRCLKYCGICC+KCHC
Sbjct: 1  MKMVLMLFLLVSLALSSCFFEVSIAGSDFCDSKCAVRCSKAGVQDRCLKYCGICCEKCHC 60

Query: 61 VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
          VPSGT+GHKDECPCYRD+KNSKGK KCP
Sbjct: 61 VPSGTFGHKDECPCYRDMKNSKGKSKCP 88

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722324|ref|NP_001236984.1| uncharacterized protein LOC100500113 [Glycine max] gi|255629301|gb|ACU14995.1| unknown [Glycine max]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 75/88 (85%)

Query: 1   MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
           MK+A V  LL+ LVL+S+ FEVSMAGS FC SKCA RCS+AG +DRC ++CGICC KC C
Sbjct: 28  MKVAFVAVLLICLVLSSSLFEVSMAGSAFCSSKCAKRCSRAGMKDRCTRFCGICCSKCRC 87

Query: 61  VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
           VPSGTYG+K ECPCYRD+KNSKGKPKCP
Sbjct: 88  VPSGTYGNKHECPCYRDMKNSKGKPKCP 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458776|ref|XP_002285141.1| PREDICTED: uncharacterized protein LOC100257455 [Vitis vinifera] gi|302142231|emb|CBI19434.3| unnamed protein product [Vitis vinifera]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 76/88 (86%)

Query: 1  MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
          MK  L TFLLV LVL+S+F + +MAGS FCDSKCA RCSKAG +DRCLKYCGICC++C C
Sbjct: 1  MKPLLATFLLVFLVLSSSFVQNAMAGSSFCDSKCAARCSKAGMKDRCLKYCGICCEECKC 60

Query: 61 VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
          VPSGTYG+K ECPCY+D KNSKG+PKCP
Sbjct: 61 VPSGTYGNKHECPCYKDKKNSKGQPKCP 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564141|ref|XP_003550315.1| PREDICTED: uncharacterized protein LOC100305602 [Glycine max]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 75/88 (85%)

Query: 1  MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
          MK+A    LL+ LVL+S+ FEVSMAGS FC SKC+ RCS+AG +DRC+K+CGICC KC+C
Sbjct: 1  MKVAFAAVLLICLVLSSSLFEVSMAGSAFCSSKCSKRCSRAGMKDRCMKFCGICCSKCNC 60

Query: 61 VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
          VPSGTYG+K ECPCYRD+KNSKGK KCP
Sbjct: 61 VPSGTYGNKHECPCYRDMKNSKGKAKCP 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626041|gb|ACU13365.1| unknown [Glycine max]

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 75/88 (85%)

Query: 1  MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
          MK+A    LL+ LVL+S+ FEVSMAGS FC SKC+ RCS+AG +DRC+K+CGICC KC+C
Sbjct: 1  MKVAFAAVLLICLVLSSSLFEVSMAGSAFCSSKCSKRCSRAGMKDRCMKFCGICCGKCNC 60

Query: 61 VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
          VPSGTYG+K ECPCYRD+KNSKGK KCP
Sbjct: 61 VPSGTYGNKHECPCYRDMKNSKGKAKCP 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137706|ref|XP_002327192.1| predicted protein [Populus trichocarpa] gi|222835507|gb|EEE73942.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 73/88 (82%)

Query: 1  MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
          MK       L+ LV +S+ FEV+MA S FCDSKC+VRCSKAG +DRCLKYCGICC+KC C
Sbjct: 1  MKPVFAAIFLLCLVFSSSLFEVTMAASGFCDSKCSVRCSKAGIKDRCLKYCGICCEKCKC 60

Query: 61 VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
          VPSGTYG+K ECPCYRD+KNSKGKPKCP
Sbjct: 61 VPSGTYGNKHECPCYRDMKNSKGKPKCP 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538122|ref|XP_002510126.1| GAST1 protein precursor, putative [Ricinus communis] gi|223550827|gb|EEF52313.1| GAST1 protein precursor, putative [Ricinus communis]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 73/88 (82%)

Query: 1  MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
          MK + V   LV  VLTS+ FEV++AGS FCDSKC  RC KAG +DRCLKYCGICC+KC C
Sbjct: 1  MKPSFVALFLVCFVLTSSLFEVTVAGSGFCDSKCEKRCEKAGVKDRCLKYCGICCEKCKC 60

Query: 61 VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
          VPSGTYG+K ECPCYRD+KNSKGKPKCP
Sbjct: 61 VPSGTYGNKHECPCYRDMKNSKGKPKCP 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407260765|gb|AFT92001.1| gibberellin-regulated protein [Populus tomentosa] gi|407260789|gb|AFT92013.1| gibberellin-regulated protein [Populus tomentosa]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 72/88 (81%)

Query: 1  MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
          MK       L+ LV +S+ FEV+MA S FCDSKC+ RCSKAG +DRCLKYCGICC+KC C
Sbjct: 1  MKPVFAAVFLLCLVFSSSLFEVTMAASGFCDSKCSARCSKAGIKDRCLKYCGICCEKCKC 60

Query: 61 VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
          VPSGTYG+K ECPCYRD+KNSKGKPKCP
Sbjct: 61 VPSGTYGNKHECPCYRDMKNSKGKPKCP 88

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407260767|gb|AFT92002.1| gibberellin-regulated protein [Populus alba x Populus tremula var. glandulosa] gi|407260791|gb|AFT92014.1| gibberellin-regulated protein [Populus alba x Populus tremula var. glandulosa]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 72/88 (81%)

Query: 1  MKLALVTFLLVSLVLTSTFFEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
          MK       L+ LV +S+ FEV+MA S FCDSKC+ RCSKAG +DRCLKYCGICC+KC C
Sbjct: 1  MKPVFAAVFLLCLVFSSSLFEVTMAASGFCDSKCSARCSKAGIKDRCLKYCGICCEKCKC 60

Query: 61 VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
          VPSGTYG+K ECPCYRD+KNSKGKPKCP
Sbjct: 61 VPSGTYGNKLECPCYRDMKNSKGKPKCP 88

Source: Populus alba x Populus tremula var. glandulosa

Species: Populus alba x Populus glandulosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506416|gb|AFK41274.1| unknown [Lotus japonicus]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/90 (74%), Positives = 74/90 (82%), Gaps = 2/90 (2%)

Query: 1  MKLALVTFLLVS-LVLTSTFFEVSMAGSD-FCDSKCAVRCSKAGREDRCLKYCGICCDKC 58
          MKLA    LLV  LVL+S++FEVSMA S  FCD+KC  RCSKA  +DRCLK+CGICCDKC
Sbjct: 1  MKLAFANVLLVMCLVLSSSWFEVSMASSSGFCDTKCEQRCSKASIQDRCLKFCGICCDKC 60

Query: 59 HCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
           CVPSGTYG+K ECPCYRDLKNSKGK KCP
Sbjct: 61 KCVPSGTYGNKHECPCYRDLKNSKGKIKCP 90

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:505006706	89	AT5G59845 "AT5G59845" [Arabido	0.761	0.752	0.75	7.3e-27
TAIR|locus:2039732	87	AT2G39540 [Arabidopsis thalian	0.988	1.0	0.579	1.1e-25
TAIR|locus:4010713424	90	AT1G10588 [Arabidopsis thalian	0.761	0.744	0.676	1.8e-23
TAIR|locus:2060485	108	AT2G14900 "AT2G14900" [Arabido	0.681	0.555	0.683	5.5e-22
TAIR|locus:2052876	106	AT2G30810 [Arabidopsis thalian	0.670	0.556	0.542	6.7e-17
TAIR|locus:505006327	97	GASA5 "GAST1 protein homolog 5	0.670	0.608	0.508	3.7e-16
TAIR|locus:4010713737	103	AT3G10185 [Arabidopsis thalian	0.670	0.572	0.508	4.2e-15
TAIR|locus:2019195	101	GASA6 "AT1G74670" [Arabidopsis	0.670	0.584	0.491	2.3e-14
TAIR|locus:2062175	94	AT2G18420 "AT2G18420" [Arabido	0.670	0.627	0.474	7.9e-14
TAIR|locus:2199645	119	AT1G22690 "AT1G22690" [Arabido	0.670	0.495	0.491	1.3e-13

TAIR|locus:505006706 AT5G59845 "AT5G59845" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 51/68 (75%), Positives = 57/68 (83%)

Query:    22 VSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKC-HCVPSGTYGHKDECPCYRDLKN 80
             +S A S  C  KC VRCSKAGR+DRCLKYC ICC+KC +CVPSGTYG+KDECPCYRD+KN
Sbjct:    22 LSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKN 81

Query:    81 SKGKPKCP 88
             SKG  KCP
Sbjct:    82 SKGTSKCP 89

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2039732 AT2G39540 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 51/88 (57%), Positives = 57/88 (64%)

Query:     1 MKLAXXXXXXXXXXXXXXXXEVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHC 60
             MKL                  +S A S  C  KC VRCSKAG+ + CLKYC ICC KC+C
Sbjct:     1 MKLVVVQFFIISLLLTSSFSVLSSADSS-CGGKCNVRCSKAGQHEECLKYCNICCQKCNC 59

Query:    61 VPSGTYGHKDECPCYRDLKNSKGKPKCP 88
             VPSGT+GHKDECPCYRD+KNSKG  KCP
Sbjct:    60 VPSGTFGHKDECPCYRDMKNSKGGSKCP 87

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:4010713424 AT1G10588 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 46/68 (67%), Positives = 53/68 (77%)

Query:    22 VSMAGSDFCDSKCAVRCSKAGR-EDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKN 80
             +S A S  C  KC+VRCSKA R  + CL+ C ICC KC+CVPSGTYG+KDECPCYRD+KN
Sbjct:    23 LSSADSSACGGKCSVRCSKADRTHEECLEDCDICCQKCNCVPSGTYGNKDECPCYRDMKN 82

Query:    81 SKGKPKCP 88
             SKG  KCP
Sbjct:    83 SKGGSKCP 90

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2060485 AT2G14900 "AT2G14900" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 41/60 (68%), Positives = 46/60 (76%)

Query:    29 FCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
             +C  KC  RC +AG +DRCLKYCGICC  C CVPSGTYG+K EC CYRD  +SKG PKCP
Sbjct:    49 WCGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2052876 AT2G30810 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 32/59 (54%), Positives = 37/59 (62%)

Query:    30 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
             C   C  RCS       CL +C  CC+KC CVPSGTYGHK+ECPCY +    +G PKCP
Sbjct:    48 CPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:505006327 GASA5 "GAST1 protein homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query:    30 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
             C+SKC+ RCS    +  C+ +C  CC KC CVP GT+G+K  CPCY + K  +G+PKCP
Sbjct:    39 CNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGRPKCP 97

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

TAIR|locus:4010713737 AT3G10185 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 30/59 (50%), Positives = 36/59 (61%)

Query:    30 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
             C  +C  RCS    +  CL +C  CC+KC CVP GTYG+K  CPCY + K   G PKCP
Sbjct:    45 CGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2019195 GASA6 "AT1G74670" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 29/59 (49%), Positives = 35/59 (59%)

Query:    30 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
             C  +C  RCS       C+ +C  CC KC CVP GTYG+K  CPCY + K  +G PKCP
Sbjct:    43 CGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2062175 AT2G18420 "AT2G18420" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query:    30 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
             C+S+C  RCS + R + C + CG CC +C+CV  GT G+ D+CPCY  L    G+ KCP
Sbjct:    36 CNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2199645 AT1G22690 "AT1G22690" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 29/59 (49%), Positives = 34/59 (57%)

Query:    30 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
             C   CA RCSK  R+  C + CG CC KC CVP GT G+   CPCY  ++    K KCP
Sbjct:    61 CGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q948Z4	SNAK1_SOLTU	No assigned EC number	0.7272	1.0	1.0	N/A	no
P86888	PMLN_PRUPE	No assigned EC number	0.8730	0.7159	1.0	N/A	no
Q8LFM2	GASAA_ARATH	No assigned EC number	0.6741	1.0	0.9887	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	88
pfam02704	60	pfam02704, GASA, Gibberellin regulated protein	2e-24

>gnl|CDD|190394 pfam02704, GASA, Gibberellin regulated protein

 Score = 86.2 bits (214), Expect = 2e-24
 Identities = 38/60 (63%), Positives = 43/60 (71%)

Query: 29 FCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 88
           C  KCAVRCSK  R+  CL+ CG CC KC CVP GTYG+KDECPCY + K   G+PKCP
Sbjct: 1  DCGGKCAVRCSKTSRKKPCLRACGKCCAKCLCVPPGTYGNKDECPCYNNWKTHGGRPKCP 60

This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF02704	60	GASA: Gibberellin regulated protein; InterPro: IPR	100.0
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	83.36

>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family

Probab=100.00  E-value=2.1e-38  Score=201.99  Aligned_cols=60  Identities=65%  Similarity=1.546  Sum_probs=59.5

Q ss_pred             CChHHhhHHHhhcCcchHHHHHHhHhhccccccCCCCCCCCCCCCcccccccCCCCCCCC
Q 039784           29 FCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP   88 (88)
Q Consensus        29 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gtygnk~~CpCY~~m~t~~g~pKCP   88 (88)
                      ||+++|++|||+++++++||++||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus         1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP   60 (60)
T PF02704_consen    1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP   60 (60)
T ss_pred             CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence            799999999999999999999999999999999999999999999999999999999999

The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=83.36  E-value=1.1  Score=30.23  Aligned_cols=11  Identities=36%  Similarity=0.640  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q 039784            6 VTFLLVSLVLT   16 (88)
Q Consensus         6 ~~~ll~~lll~   16 (88)
                      +.+||++|||+
T Consensus         9 L~l~LA~lLli   19 (95)
T PF07172_consen    9 LGLLLAALLLI   19 (95)
T ss_pred             HHHHHHHHHHH
Confidence            33333344443

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00