Citrus Sinensis ID: 039786

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYYMTKDENWGKVTGHIPDVHQIY
Secondary Structure (PSIPRED)
cccccccEEEEEEEcccHHHHHHHHHccccccEEEEEEccccccccccccccccccccEEEEEEEccccccHHcccccccEEEEEEccccccHHHHHHccccHHHHHHcccccccEEEEcccccccccEEEEcccccccEEEEcccccccccEEEEEcccccccccccccccccccEEEEEccHHHHHHHHcccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHEEEEEEEcccHHHHHHHHHHcccccEEEEEEcccccEEcHHccccccHHHHEEEEEccHHHcccHcccccccEEEEEEcccccccHHHHHHHccccHEEEEEEcccccEEEEccccccccEEEEEcccccccEEEEEcccccccEEEEEcccHHHHHcccHHHHHHHHHEEEEcccHHHHHHHHccccccEEEEEccEEEEEc
Coil and Loop (DISEMBL)
mklrqlrklsirpqngngkdLCGLIANLKNLESLTVEMTSKEEILDllslssppqyLQRLYLTGNMKKLPDWIFKLKNLIRLGLelsglaeepirVLQASPNLLEILLTGTydyelfhfeagwfpkLQKLLLWDFIAVKSVIIekgavpdirelrigpcpllmeipIGIEHLKNLKLLKFAGMVKQVYYMtkdenwgkvtghipdvhqiy
Flexible Loop (DISEMBL)
mklrqlrklsirpqngngkdLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIiekgavpdireLRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYYMTKdenwgkvtghipdvhqiy
Low Complexity Region (SEG)
MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDllslssPPQYLQRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYYMTKDENWGKVTGHIPDVHQIY
Disordered region (IsUnstruct)
*******************DLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYYMTKDENWGKVTGHIPD*****
Disordered Region (DISOPRED)
MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQV**********KVTGHIPDVHQIY
Disordered Region (DISEMBL)
MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYYMTKDENWGKVTGHIPDVHQIY
Disordered Region (DISPRO)
MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYYMTKDENWGKVTGHIPDVHQIY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYYMTKDENWGKVTGHIPDVHQIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q39214	926	Disease resistance protei	yes	no	0.957	0.217	0.287	4e-14
Q8W4J9	908	Disease resistance protei	no	no	0.990	0.229	0.269	4e-09
P59584	910	Disease resistance protei	no	no	0.971	0.224	0.278	4e-09
Q9FJK8	908	Probable disease resistan	no	no	0.990	0.229	0.269	8e-08
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.890	0.207	0.257	9e-08
P0DI18	1049	Probable disease resistan	no	no	0.795	0.159	0.260	4e-07
P0DI17	1049	Probable disease resistan	no	no	0.795	0.159	0.260	4e-07
Q8W3K3	910	Putative disease resistan	no	no	0.690	0.159	0.275	4e-06
Q8W474	907	Probable disease resistan	no	no	0.961	0.222	0.282	8e-06
P0DI16	1017	Probable disease resistan	no	no	0.657	0.135	0.302	4e-05

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 15/216 (6%)

Query: 3   LRQLRKLS-IRPQNGNGKDLCGLIANLKNLESLTVEMTSKEE---ILDLLSLSSPPQYLQ 58
           + QL ++S +  +  +G+DLC  +  +K +  L++    +EE   I DL++ +S    ++
Sbjct: 705 MTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATAS----IE 760

Query: 59  RLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFH 118
           +L+L G ++++P W   L+NL  LGL  S L E  I  +Q  P L+ +     Y      
Sbjct: 761 KLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLR 820

Query: 119 FEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLL 178
           F  G F  L+ L +     +  V+IE GA+ ++++L +  C  L  +P GIE+L NL+ L
Sbjct: 821 FAQG-FQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQEL 879

Query: 179 KFAGMVKQVYYMTKDENWGKV----TGHIPDVHQIY 210
               +  Q+    + E  G V      HIP +   +
Sbjct: 880 HLIHVSNQLVERIRGE--GSVDRSRVKHIPAIKHYF 913

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 109/215 (50%), Gaps = 7/215 (3%)

Query: 1   MKLRQLRKLSIR-PQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQY--L 57
           +++ +LR L++   +  N + L   +  L+NLE+L    + +  ++D +       +  L
Sbjct: 691 LRMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHL 750

Query: 58  QRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYEL 116
           ++L L   M K+PD      +L+ L L   G+ E+P+ +L+   +L  + L    +    
Sbjct: 751 KQLGLAVRMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSR 810

Query: 117 FHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLK 176
                G FP+L  + +     ++  I+E+G++P +R L I  C  L E+P G++++ +LK
Sbjct: 811 MVCSKGGFPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLK 870

Query: 177 LLKFAGMVKQ--VYYMTKDENWGKVTGHIPDVHQI 209
            LK  GM ++     +   E++ KV  HIPDV  I
Sbjct: 871 ELKIEGMKREWKEKLVPGGEDYYKVQ-HIPDVQFI 904

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 15/219 (6%)

Query: 1   MKLRQLRKLSIR-PQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQY--L 57
           +++ +LR L++   +  N K L   +  L+NLE+L V  + K  ++D +       +  L
Sbjct: 693 LRMTKLRNLTVSLSERYNFKTLSSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHFIHL 752

Query: 58  QRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELF 117
           + L L   M K+PD      +L+ + L   G+ E+P+ +L+   +L  + L     Y+ F
Sbjct: 753 KELGLVVRMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLHHLKSVQLR----YKAF 808

Query: 118 H-----FEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHL 172
                      F +L  L +     ++  I+E+G++P +R L I  C  L E+P G++++
Sbjct: 809 VGRRMVCSKDGFTQLCALDISKQSELEDWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYI 868

Query: 173 KNLKLLKFAGMVKQ--VYYMTKDENWGKVTGHIPDVHQI 209
            +LK LK  GM ++     +   E++ KV  HIPDV  I
Sbjct: 869 TSLKELKIEGMKREWKEKLVPGGEDYYKVQ-HIPDVQFI 906

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 107/215 (49%), Gaps = 7/215 (3%)

Query: 1   MKLRQLRKLSIR-PQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQY--L 57
           +++ +LR L +   +  N + L   +  L+NLE L V  + +  ++D +       +  L
Sbjct: 691 LRMTKLRNLGVSLSERCNFETLSSSLRELRNLEMLNVLFSPEIVMVDHMGEFVLDHFIHL 750

Query: 58  QRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYEL 116
           ++L L   M K+PD      +L  + L    + E+P+ +L+   +L  + L+ G +    
Sbjct: 751 KQLGLAVRMSKIPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRR 810

Query: 117 FHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLK 176
                G FP+L  L +     ++  I+E+G++P +R L I  C  L E+P G++++ +LK
Sbjct: 811 VVCSKGGFPQLCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLK 870

Query: 177 LLKFAGMVKQ--VYYMTKDENWGKVTGHIPDVHQI 209
            LK   M ++     +   E++ KV  HIPDV  I
Sbjct: 871 ELKIREMKREWKEKLVPGGEDYYKVQ-HIPDVQFI 904

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 98/190 (51%), Gaps = 3/190 (1%)

Query: 19  KDLCGLIANLKNLESLTVEMTSKEEILDLLS-LSSPPQYLQRLYLTGNMKKLPDWIFKLK 77
           ++L   +   + LE+L+   + K  ++D +        +L++L L  ++ K+PD      
Sbjct: 702 ENLSSSLRQFRKLETLSFIYSRKTYMVDYVGEFVLDFIHLKKLSLGVHLSKIPDQHQLPP 761

Query: 78  NLIRLGLELSGLAEEPIRVLQASPNLLEI-LLTGTYDYELFHFEAGWFPKLQKLLLWDFI 136
           ++  + L    + E+P+ +L+   +L  + L    +         G FP+L+ L + +  
Sbjct: 762 HIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCSKGGFPQLRALQISEQS 821

Query: 137 AVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYYMTKDENW 196
            ++  I+E+G++P +R+L I  C  L E+P G++++ +LK LK  GM ++       E++
Sbjct: 822 ELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGMKREWKEKLVGEDY 881

Query: 197 GKVTGHIPDV 206
            KV  HIPDV
Sbjct: 882 YKVQ-HIPDV 890

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 2/169 (1%)

Query: 2   KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLY 61
           KL QL++L +R ++ +GK++         L+ L+++   + E   +   S P  +   + 
Sbjct: 799 KLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIR 858

Query: 62  LTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI-LLTGTYDYELFHFE 120
               +K+LPD      +L  + L    L E+P+  L+   +L E+ LL  ++   +    
Sbjct: 859 DCRKLKQLPDEHLP-SHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCA 917

Query: 121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGI 169
              FP+L KL L +   ++  I+E G++P +  L I  CP L ++P G 
Sbjct: 918 GSGFPQLHKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLPNGF 966

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 2/169 (1%)

Query: 2   KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLY 61
           KL QL++L +R ++ +GK++         L+ L+++   + E   +   S P  +   + 
Sbjct: 799 KLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIR 858

Query: 62  LTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI-LLTGTYDYELFHFE 120
               +K+LPD      +L  + L    L E+P+  L+   +L E+ LL  ++   +    
Sbjct: 859 DCRKLKQLPDEHLP-SHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCA 917

Query: 121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGI 169
              FP+L KL L +   ++  I+E G++P +  L I  CP L ++P G 
Sbjct: 918 GSGFPQLHKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLPNGF 966

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 11/156 (7%)

Query: 56  YLQRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYE 115
           +L++L L   M KLPD      +L  + L+   L E+P+ +L+    L E+ L    D+ 
Sbjct: 754 HLKQLNLRLYMPKLPDEQHFPSHLTSISLDGCCLVEDPLPILEKLLELKEVRL----DFR 809

Query: 116 LFH-----FEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIE 170
            F         G FP+L +L +W     +  I+E+G++P +  L I  C  L ++P G+ 
Sbjct: 810 AFCGKRMVSSDGGFPQLHRLYIWGLAEWEEWIVEEGSMPRLHTLTIWNCQKLKQLPDGLR 869

Query: 171 HLKNLKLLKFAGMVKQVYYMTKDENWGKVTGHIPDV 206
            + ++K L      K++     +E +     HIP V
Sbjct: 870 FIYSIKDLDMDKKWKEILSEGGEEYYK--VQHIPSV 903

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score = 50.4 bits (119), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 35/237 (14%)

Query: 1   MKLRQLRKLS----IRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQY 56
           + LR L KL         + + KDLCG+      L +L + +T       L +  S  + 
Sbjct: 673 LSLRNLVKLETLVYFSTWHSSSKDLCGMT----RLMTLAIRLTRVTSTETLSASISGLRN 728

Query: 57  LQRLYLTGNMKK-------LPDWIFKLKNLI-------------RLG---LELSGLAEEP 93
           L+ LY+ G   K       + D+I  LK+L+             RL    L   GL E+P
Sbjct: 729 LEYLYIVGTHSKKMREEGIVLDFI-HLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDP 787

Query: 94  IRVLQASPNLLE-ILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIR 152
           + +L+   +L   ILL G+Y         G FP+L+KL +      +  ++E+G++P + 
Sbjct: 788 MPILEKLLHLKGVILLKGSYCGRRMVCSGGGFPQLKKLEIVGLNKWEEWLVEEGSMPLLE 847

Query: 153 ELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYYMTKDENWGKVTGHIPDVHQI 209
            L I  C  L EIP G+  + +L+L+      K+ + +   E++ KV  HIP V  I
Sbjct: 848 TLSILDCEELKEIPDGLRFIYSLELVMLGTRWKKKFSVG-GEDYYKVQ-HIPSVEFI 902

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI16|DRL44_ARATH Probable disease resistance protein RDL5 OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 4/142 (2%)

Query: 66  MKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYELFHFEAGWF 124
           +K+LPD      +L  + L    L ++P+  L     L E+ L   T+   +     G F
Sbjct: 855 LKQLPDEHLP-SHLTSISLFFCCLEKDPLPTLGRLVYLKELQLGFRTFSGRIMVCSGGGF 913

Query: 125 PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV 184
           P+LQKL ++     +  I+E+G++P +  L I  CP L ++P G++ + +LK LK +   
Sbjct: 914 PQLQKLSIYRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKISERW 973

Query: 185 KQVYYMTKDENWGKVTGHIPDV 206
           K+      +E + KV  HIP V
Sbjct: 974 KERLSEGGEEYY-KVQ-HIPSV 993

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
224098990	948	nbs-lrr resistance protein [Populus tric	0.985	0.218	0.404	3e-35
224138304	948	nbs-lrr resistance protein [Populus tric	0.985	0.218	0.404	3e-35
224138276	948	nbs-lrr resistance protein [Populus tric	0.985	0.218	0.404	3e-35
224071423	1006	nbs-lrr resistance protein [Populus tric	0.985	0.205	0.418	5e-35
400296111	941	NBS-LRR type disease resistance protein	0.990	0.221	0.431	6e-35
225465433	908	PREDICTED: disease resistance protein RP	0.980	0.226	0.421	1e-34
359480122	934	PREDICTED: disease resistance protein RP	0.971	0.218	0.452	5e-33
357484809	946	Nbs-lrr resistance protein [Medicago tru	0.995	0.220	0.408	8e-33
105922948	1997	NBS-NBS-LRR type disease resistance prot	0.866	0.091	0.431	2e-32
224138300	974	cc-nbs-lrr resistance protein [Populus t	0.866	0.186	0.431	2e-32

>gi|224098990|ref|XP_002334517.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222872779|gb|EEF09910.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 136/215 (63%), Gaps = 8/215 (3%)

Query: 2   KLRQLRKLSI-RPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRL 60
           +L+QLR+L I + +  +GK LC  I  L NL +L++   ++ EI+DL  L+SPPQ+LQRL
Sbjct: 700 RLKQLRRLGIVKLKKKHGKALCSSIERLTNLRALSLTSITESEIIDLDYLASPPQFLQRL 759

Query: 61  YLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE 120
           YL G M+K PDWI  L +L++L L+ S L+E+P+  LQ  PNL+ +     Y+ E+  F+
Sbjct: 760 YLAGRMEKFPDWISSLDSLVKLVLKWSKLSEDPLLSLQYLPNLVHLEFVQVYNGEILCFQ 819

Query: 121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
           A  F +L+ L L     ++ +I+E+GA+P + ++ +  C  L  +P GIEHL  LK+L+F
Sbjct: 820 AKGFQRLKFLGLNKLERLRMIIVERGAMPSLEKMIVQSCKSLRRVPSGIEHLSTLKVLEF 879

Query: 181 AGMVKQVYYMT-----KDENWGKVTGHIPDVHQIY 210
             M K++  MT     +D ++ KV  H+PDV+  Y
Sbjct: 880 FNMPKEL-VMTLHPNGEDGDYLKV-AHVPDVYSTY 912

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138304|ref|XP_002326569.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222833891|gb|EEE72368.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 136/215 (63%), Gaps = 8/215 (3%)

Query: 2   KLRQLRKLSI-RPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRL 60
           +L+QLR+L I + +  +GK LC  I  L NL +L++   ++ EI+DL  L+SPPQ+LQRL
Sbjct: 700 RLKQLRRLGIVKLKKKHGKALCSSIERLTNLRALSLTSITESEIIDLDYLASPPQFLQRL 759

Query: 61  YLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE 120
           YL G M+K PDWI  L +L++L L+ S L+E+P+  LQ  PNL+ +     Y+ E+  F+
Sbjct: 760 YLAGRMEKFPDWISSLDSLVKLVLKWSKLSEDPLLSLQYLPNLVHLEFVQVYNGEILCFQ 819

Query: 121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
           A  F +L+ L L     ++ +I+E+GA+P + ++ +  C  L  +P GIEHL  LK+L+F
Sbjct: 820 AKGFQRLKFLGLNKLDRLRIIIVERGAMPSLEKMIVQSCKSLRRVPSGIEHLSTLKVLEF 879

Query: 181 AGMVKQVYYMT-----KDENWGKVTGHIPDVHQIY 210
             M K++  MT     +D ++ KV  H+PDV+  Y
Sbjct: 880 FNMPKEL-VMTLHPNGEDGDYLKV-AHVPDVYSTY 912

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138276|ref|XP_002326562.1| nbs-lrr resistance protein [Populus trichocarpa] gi|105922886|gb|ABF81442.1| NBS-LRR type disease resistance protein [Populus trichocarpa] gi|222833884|gb|EEE72361.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 136/215 (63%), Gaps = 8/215 (3%)

Query: 2   KLRQLRKLSI-RPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRL 60
           +L+QLR+L I + +  +GK LC  I  L NL +L++   ++ EI+DL  L+SPPQ+LQRL
Sbjct: 700 RLKQLRRLGIVKLKKKHGKALCSSIERLTNLRALSLTSITESEIIDLDYLASPPQFLQRL 759

Query: 61  YLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE 120
           YL G M+K PDWI  L +L++L L+ S L+E+P+  LQ  PNL+ +     Y+ E+  F+
Sbjct: 760 YLAGRMEKFPDWISSLDSLVKLVLKWSKLSEDPLLSLQYLPNLVHLEFVQVYNGEILCFQ 819

Query: 121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
           A  F +L+ L L     ++ +I+E+GA+P + ++ +  C  L  +P GIEHL  LK+L+F
Sbjct: 820 AKGFQRLKFLGLNKLDRLRMIIVEQGAMPSLEKMIVQSCKSLRRVPSGIEHLSTLKVLEF 879

Query: 181 AGMVKQVYYMT-----KDENWGKVTGHIPDVHQIY 210
             M K++  MT     +D ++ KV  H+PDV+  Y
Sbjct: 880 FNMPKEL-VMTLHPNGEDGDYLKV-AHVPDVYSTY 912

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071423|ref|XP_002303452.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222840884|gb|EEE78431.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/215 (41%), Positives = 135/215 (62%), Gaps = 8/215 (3%)

Query: 2   KLRQLRKLSI-RPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRL 60
           +L+QLRKL I + +  +GK LC  +  L NL +L+    ++ EI+DL  ++SPPQYLQRL
Sbjct: 758 RLKQLRKLGIVKLKKKHGKALCSSVERLTNLRALSATSITENEIIDLDYVASPPQYLQRL 817

Query: 61  YLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE 120
           YL G M+KLPDWI  L +L+RL L+ S L ++P+  LQ  PNL+ + L   Y+ EL  F+
Sbjct: 818 YLGGRMEKLPDWISSLDSLVRLVLKWSQLNDDPLVSLQHLPNLVHLELVQVYNGELLCFQ 877

Query: 121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
           A  F +L+ L L     ++ + +E+GA+P + +L +  C  L  +P GIEHL  LK+L+F
Sbjct: 878 AKGFQRLKFLGLNKLERLRMITVEQGAMPCLEKLIVQSCKSLRRVPSGIEHLSTLKVLEF 937

Query: 181 AGMVKQVYYMT-----KDENWGKVTGHIPDVHQIY 210
             M K++  MT     +D ++ KV  H+PDV+  Y
Sbjct: 938 FDMPKEL-VMTLHPNGEDGDYLKV-AHVPDVYSTY 970

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400296111|gb|AFP82245.1| NBS-LRR type disease resistance protein [Malus x domestica]

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/213 (43%), Positives = 131/213 (61%), Gaps = 5/213 (2%)

Query: 2   KLRQLRKLSI-RPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRL 60
           ++ QLR+L I + +  +G  +C  +  L NL SL+V    K  I+DL  +S PPQ+LQRL
Sbjct: 697 RMNQLRRLGIFKLRTEDGVTVCSSVEKLTNLRSLSVSSVEKGMIIDLTQISCPPQFLQRL 756

Query: 61  YLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE 120
           YLTG ++ LP WI  L NL+RL L+ S L E+P+  LQ  PNL+ + L   YD E  HF+
Sbjct: 757 YLTGRLENLPHWISSLHNLVRLFLKWSRLKEDPLVHLQGLPNLVHLELLQVYDGECLHFK 816

Query: 121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
            G FP L+ L +     V+ +II++GA+P + +L I  C LL ++P GIEHLK+LKLL+F
Sbjct: 817 EGGFPSLKLLGIDKLEGVEEIIIDEGAMPCLEKLIIQRCNLLKKVPSGIEHLKSLKLLEF 876

Query: 181 AGMVKQ-VYYMTKD--ENWGKVTGHIPDVHQIY 210
             M  + +  +  D  E+ GKV  HI  V+  Y
Sbjct: 877 FDMPDELIQSLLPDGGEDHGKV-AHIQAVYYSY 908

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465433|ref|XP_002265568.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/209 (42%), Positives = 130/209 (62%), Gaps = 3/209 (1%)

Query: 2   KLRQLRKLSI-RPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRL 60
           KLRQLRKL I +   GNG+ LC  I+N+ +L+ L+V   S++EILD+  +S+PP +L  +
Sbjct: 696 KLRQLRKLGITKLSRGNGQRLCASISNMVHLKYLSVCSLSEDEILDIQYMSNPPPFLSTV 755

Query: 61  YLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE 120
           YL G +++LPDWI KL +L+R+ L  S LA +P++V QA P+L  + L  T   E   F 
Sbjct: 756 YLMGRLERLPDWISKLPSLVRVILTRSNLANDPMQVFQALPSLQALSLFQTSVVEQLCFG 815

Query: 121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
           A    KL++L ++D I +K V IE G +P + EL IG CP L E+P GI HL  L  L F
Sbjct: 816 ATGIQKLKRLRIYDLIGLKRVKIEDGTLPLLEELMIGRCPQLEELPSGIRHLSKLTTLTF 875

Query: 181 AGMVKQVYY-MTKDENWG-KVTGHIPDVH 207
             + +++   M +D+    ++  HIP +H
Sbjct: 876 FDLQEELRLGMIRDQGRNFEIVKHIPYIH 904

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480122|ref|XP_002265617.2| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera] gi|147771833|emb|CAN60254.1| hypothetical protein VITISV_025805 [Vitis vinifera]

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/210 (45%), Positives = 130/210 (61%), Gaps = 6/210 (2%)

Query: 2   KLRQLRKLSI-RPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRL 60
           KLRQLRKL I +    NG+ LC  I  + +L+SL++  ++++EILDL  +S PP  L RL
Sbjct: 698 KLRQLRKLGITKLTRENGQPLCASIMKMNHLKSLSISSSTEDEILDLQHVSDPPPCLSRL 757

Query: 61  YLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQAS-PNLLEILLTGTYDYELFHF 119
            L G + KLPDWI KLK+L++LGL  S L+ +P+ VL A  PNLLE+ L  T+  E   F
Sbjct: 758 ELYGRLDKLPDWISKLKSLVKLGLWKSRLSHDPMGVLGAQLPNLLELELLQTHAVEQLCF 817

Query: 120 EAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLK 179
           EA  F KL+ L + D I +K V IE GA+P + EL IGP P L E+P GI +L+ LK L 
Sbjct: 818 EAIGFQKLKVLRICDLIELKKVKIENGALPQVEELEIGPSPQLEEVPHGIYYLRKLKTLA 877

Query: 180 FAGMVKQVYYMT---KDENWGKVTGHIPDV 206
           F  M ++        +  N+  +  HIP+V
Sbjct: 878 FRDMQEEFELSMIPYRGRNYD-IVEHIPNV 906

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484809|ref|XP_003612692.1| Nbs-lrr resistance protein [Medicago truncatula] gi|355514027|gb|AES95650.1| Nbs-lrr resistance protein [Medicago truncatula]

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 125/213 (58%), Gaps = 4/213 (1%)

Query: 2   KLRQLRKLSI-RPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRL 60
           +L QLR+L I R +  +GKD C  I  L +L +L+V    + +++DL SLS+PP +LQRL
Sbjct: 698 ELSQLRRLGIMRLREEDGKDFCFCIEKLVSLSALSVTSEGENKVIDLTSLSTPPPFLQRL 757

Query: 61  YLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE 120
           YL+G +K+LP WI  L NL RL L+ S L  +P+  LQ  PNL  + L   YD +  HF+
Sbjct: 758 YLSGRLKELPCWIPSLHNLARLFLKWSYLKHDPLVYLQDLPNLAHLELLQVYDGDTLHFK 817

Query: 121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
            G F KL+ L +  F  +  VI+ KGA+P +  L IG C  L ++P GIE+L  +K+L+F
Sbjct: 818 CGKFNKLKVLGIDKFEELGQVIVGKGAMPCLETLSIGRCESLKKVPSGIENLTKIKVLEF 877

Query: 181 AGMVKQVYYMTKDENWGK---VTGHIPDVHQIY 210
             M  ++         GK      HIP+V+  Y
Sbjct: 878 FDMPDELMMTICQHGPGKDYWKVSHIPEVYSTY 910

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922948|gb|ABF81446.1| NBS-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 1/183 (0%)

Query: 2   KLRQLRKLSI-RPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRL 60
           +L  LR+L I + +  +GKDLC  I  L NL +L+V   ++ E++DL  LSSPPQ+LQRL
Sbjct: 695 RLIHLRRLGILKFRKEDGKDLCSSIDMLTNLRALSVTSITESEVIDLEYLSSPPQFLQRL 754

Query: 61  YLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE 120
           YLTG +++LPDWI  L +L++L L+ S L E+P+  LQ  PNL+ +     Y  E  HF 
Sbjct: 755 YLTGRLERLPDWILSLDSLVKLVLKWSRLREDPLLFLQNLPNLVHLEFIQVYSGEALHFS 814

Query: 121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
              F KL+ L L     ++S+ ++KGA+P +++L +  C LL ++P GI+HL  LK L F
Sbjct: 815 NEGFEKLKVLGLNKLERLESITVQKGALPSLQKLVVQGCKLLQKVPSGIKHLAKLKTLDF 874

Query: 181 AGM 183
             M
Sbjct: 875 FDM 877

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138300|ref|XP_002326568.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|105922919|gb|ABF81444.1| NBS-LRR type disease resistance protein [Populus trichocarpa] gi|222833890|gb|EEE72367.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 1/183 (0%)

Query: 2   KLRQLRKLSI-RPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRL 60
           +L  LR+L I + +  +GKDLC  I  L NL +L+V   ++ E++DL  LSSPPQ+LQRL
Sbjct: 695 RLIHLRRLGILKFRKEDGKDLCSSIDMLTNLRALSVTSITESEVIDLEYLSSPPQFLQRL 754

Query: 61  YLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE 120
           YLTG +++LPDWI  L +L++L L+ S L E+P+  LQ  PNL+ +     Y  E  HF 
Sbjct: 755 YLTGRLERLPDWILSLDSLVKLVLKWSRLREDPLLFLQNLPNLVHLEFIQVYSGEALHFS 814

Query: 121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
              F KL+ L L     ++S+ ++KGA+P +++L +  C LL ++P GI+HL  LK L F
Sbjct: 815 NEGFEKLKVLGLNKLERLESITVQKGALPSLQKLVVQGCKLLQKVPSGIKHLAKLKTLDF 874

Query: 181 AGM 183
             M
Sbjct: 875 FDM 877

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.971	0.220	0.276	7.2e-15
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.990	0.229	0.269	4.2e-12
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.990	0.229	0.269	3.9e-11
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.833	0.166	0.265	6e-11
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.833	0.166	0.265	6e-11
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.890	0.207	0.257	3.5e-10
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.961	0.198	0.262	1.4e-09
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.961	0.198	0.262	1.4e-09
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.823	0.152	0.267	1.5e-07
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.957	0.221	0.277	1.2e-06

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 7.2e-15, P = 7.2e-15
 Identities = 59/213 (27%), Positives = 103/213 (48%)

Query:     3 LRQLRKLS-IRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDXXXXXXPPQYLQRLY 61
             + QL ++S +  +  +G+DLC  +  +K +  L++    +EE L+          +++L+
Sbjct:   705 MTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATAS-IEKLF 763

Query:    62 LTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEA 121
             L G ++++P W   L+NL  LGL  S L E  I  +Q  P L+ +     Y      F  
Sbjct:   764 LAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQ 823

Query:   122 GWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFA 181
             G F  L+ L +     +  V+IE GA+ ++++L +  C  L  +P GIE+L NL+ L   
Sbjct:   824 G-FQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLI 882

Query:   182 GMVKQVYYMTKDENWGKV----TGHIPDVHQIY 210
              +  Q+    + E  G V      HIP +   +
Sbjct:   883 HVSNQLVERIRGE--GSVDRSRVKHIPAIKHYF 913

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 58/215 (26%), Positives = 108/215 (50%)

Query:     1 MKLRQLRKLSIR-PQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDXXXXXXPPQY--L 57
             +++ +LR L++   +  N + L   +  L+NLE+L    + +  ++D         +  L
Sbjct:   691 LRMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHL 750

Query:    58 QRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTG-TYDYEL 116
             ++L L   M K+PD      +L+ L L   G+ E+P+ +L+   +L  + L    +    
Sbjct:   751 KQLGLAVRMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSR 810

Query:   117 FHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLK 176
                  G FP+L  + +     ++  I+E+G++P +R L I  C  L E+P G++++ +LK
Sbjct:   811 MVCSKGGFPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLK 870

Query:   177 LLKFAGMVKQ--VYYMTKDENWGKVTGHIPDVHQI 209
              LK  GM ++     +   E++ KV  HIPDV  I
Sbjct:   871 ELKIEGMKREWKEKLVPGGEDYYKVQ-HIPDVQFI 904

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 58/215 (26%), Positives = 106/215 (49%)

Query:     1 MKLRQLRKLSIR-PQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDXXXXXXPPQY--L 57
             +++ +LR L +   +  N + L   +  L+NLE L V  + +  ++D         +  L
Sbjct:   691 LRMTKLRNLGVSLSERCNFETLSSSLRELRNLEMLNVLFSPEIVMVDHMGEFVLDHFIHL 750

Query:    58 QRLYLTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYEL 116
             ++L L   M K+PD      +L  + L    + E+P+ +L+   +L  + L+ G +    
Sbjct:   751 KQLGLAVRMSKIPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRR 810

Query:   117 FHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLK 176
                  G FP+L  L +     ++  I+E+G++P +R L I  C  L E+P G++++ +LK
Sbjct:   811 VVCSKGGFPQLCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLK 870

Query:   177 LLKFAGMVKQ--VYYMTKDENWGKVTGHIPDVHQI 209
              LK   M ++     +   E++ KV  HIPDV  I
Sbjct:   871 ELKIREMKREWKEKLVPGGEDYYKVQ-HIPDVQFI 904

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 6.0e-11, P = 6.0e-11
 Identities = 47/177 (26%), Positives = 86/177 (48%)

Query:     2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDXXXXXXPPQYLQRLY 61
             KL QL++L +R ++ +GK++         L+ L+++   + E         P  +   + 
Sbjct:   799 KLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIR 858

Query:    62 LTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI-LLTGTYDYELFHFE 120
                 +K+LPD      +L  + L    L E+P+  L+   +L E+ LL  ++   +    
Sbjct:   859 DCRKLKQLPDEHLP-SHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCA 917

Query:   121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKL 177
                FP+L KL L +   ++  I+E G++P +  L I  CP L ++P G   L+NL+L
Sbjct:   918 GSGFPQLHKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLPNGFPQLQNLEL 974

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 6.0e-11, P = 6.0e-11
 Identities = 47/177 (26%), Positives = 86/177 (48%)

Query:     2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDXXXXXXPPQYLQRLY 61
             KL QL++L +R ++ +GK++         L+ L+++   + E         P  +   + 
Sbjct:   799 KLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIR 858

Query:    62 LTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI-LLTGTYDYELFHFE 120
                 +K+LPD      +L  + L    L E+P+  L+   +L E+ LL  ++   +    
Sbjct:   859 DCRKLKQLPDEHLP-SHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCA 917

Query:   121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKL 177
                FP+L KL L +   ++  I+E G++P +  L I  CP L ++P G   L+NL+L
Sbjct:   918 GSGFPQLHKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLPNGFPQLQNLEL 974

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 49/190 (25%), Positives = 97/190 (51%)

Query:    19 KDLCGLIANLKNLESLTVEMTSKEEILDXXXXXXPPQ-YLQRLYLTGNMKKLPDWIFKLK 77
             ++L   +   + LE+L+   + K  ++D          +L++L L  ++ K+PD      
Sbjct:   702 ENLSSSLRQFRKLETLSFIYSRKTYMVDYVGEFVLDFIHLKKLSLGVHLSKIPDQHQLPP 761

Query:    78 NLIRLGLELSGLAEEPIRVLQASPNLLEI-LLTGTYDYELFHFEAGWFPKLQKLLLWDFI 136
             ++  + L    + E+P+ +L+   +L  + L    +         G FP+L+ L + +  
Sbjct:   762 HIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCSKGGFPQLRALQISEQS 821

Query:   137 AVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYYMTKDENW 196
              ++  I+E+G++P +R+L I  C  L E+P G++++ +LK LK  GM ++       E++
Sbjct:   822 ELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGMKREWKEKLVGEDY 881

Query:   197 GKVTGHIPDV 206
              KV  HIPDV
Sbjct:   882 YKVQ-HIPDV 890

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 54/206 (26%), Positives = 95/206 (46%)

Query:     2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDXXXXXXPPQYLQRLY 61
             KL QL++L +  ++ +GK +         L+ L++    + E         P      + 
Sbjct:   791 KLLQLKELELGFESFSGKKMVCSSGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQ 850

Query:    62 LTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYELFHFE 120
             +   +K+LPD      +L  + L    L ++P+  L     L E+ L   T+   +    
Sbjct:   851 VCRKLKQLPDEHLP-SHLTSISLFFCCLEKDPLPTLGRLVYLKELQLGFRTFSGRIMVCS 909

Query:   121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
              G FP+LQKL ++     +  I+E+G++P +  L I  CP L ++P G++ + +LK LK 
Sbjct:   910 GGGFPQLQKLSIYRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKI 969

Query:   181 AGMVKQVYYMTKDENWGKVTGHIPDV 206
             +   K+       E + KV  HIP V
Sbjct:   970 SERWKE-RLSEGGEEYYKVQ-HIPSV 993

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 54/206 (26%), Positives = 95/206 (46%)

Query:     2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDXXXXXXPPQYLQRLY 61
             KL QL++L +  ++ +GK +         L+ L++    + E         P      + 
Sbjct:   791 KLLQLKELELGFESFSGKKMVCSSGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQ 850

Query:    62 LTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYELFHFE 120
             +   +K+LPD      +L  + L    L ++P+  L     L E+ L   T+   +    
Sbjct:   851 VCRKLKQLPDEHLP-SHLTSISLFFCCLEKDPLPTLGRLVYLKELQLGFRTFSGRIMVCS 909

Query:   121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
              G FP+LQKL ++     +  I+E+G++P +  L I  CP L ++P G++ + +LK LK 
Sbjct:   910 GGGFPQLQKLSIYRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLKI 969

Query:   181 AGMVKQVYYMTKDENWGKVTGHIPDV 206
             +   K+       E + KV  HIP V
Sbjct:   970 SERWKE-RLSEGGEEYYKVQ-HIPSV 993

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 47/176 (26%), Positives = 82/176 (46%)

Query:     2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDXXXXXXPPQYLQRLY 61
             KL QL++L +  ++ +GK +         L+ L++    + E         P      ++
Sbjct:   797 KLLQLKELELGHKSFSGKKMVCSSCGFPQLQKLSISGLKEWEDWKVEESSMPLLLTLNIF 856

Query:    62 LTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEA 121
                 +K+LPD      +L  + L+  GL E+PI  L+   +L E+ L+      +     
Sbjct:   857 DCRKLKQLPDEHLP-SHLTAISLKKCGL-EDPIPTLERLVHLKELSLSELCG-RIMVCTG 913

Query:   122 GWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKL 177
             G FP+L KL L +   ++  I+E G++P +  L I  C  L ++P G   L+NL L
Sbjct:   914 GGFPQLHKLDLSELDGLEEWIVEDGSMPRLHTLEIRRCLKLKKLPNGFPQLQNLHL 969

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 58/209 (27%), Positives = 102/209 (48%)

Query:     3 LRQLRKLSIRPQNGNGKD-LCGLIANLKNLESLTVEMTSKEEILDXXXXXXPPQYLQRLY 61
             + +L  L+IR       + L   I+ L+NLE L +  T  +++ +         +L+ L 
Sbjct:   700 MTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMREEGIVLDFI-HLKHLL 758

Query:    62 LTGNMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLE-ILLTGTYDYELFHFE 120
             L   M +   +  +L   ++L  E  GL E+P+ +L+   +L   ILL G+Y        
Sbjct:   759 LDLYMPRQQHFPSRL-TFVKLS-EC-GLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCS 815

Query:   121 AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKF 180
              G FP+L+KL +      +  ++E+G++P +  L I  C  L EIP G+  + +L+L+  
Sbjct:   816 GGGFPQLKKLEIVGLNKWEEWLVEEGSMPLLETLSILDCEELKEIPDGLRFIYSLELVML 875

Query:   181 AGMVKQVYYMTKDENWGKVTGHIPDVHQI 209
                 K+ + +   E++ KV  HIP V  I
Sbjct:   876 GTRWKKKFSVG-GEDYYKVQ-HIPSVEFI 902

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.65
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.64
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.44
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.43
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.29
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.27
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.26
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.18
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.17
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.02
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.9
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.84
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.77
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.76
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.7
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.68
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.49
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.46
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.45
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.44
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.41
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.33
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.28
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.28
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.18
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.18
PLN03150	623	hypothetical protein; Provisional	98.15
PLN03150	623	hypothetical protein; Provisional	98.11
PRK15386	426	type III secretion protein GogB; Provisional	98.06
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.03
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
KOG4341	483	consensus F-box protein containing LRR [General fu	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.76
KOG4341	483	consensus F-box protein containing LRR [General fu	97.73
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.72
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.53
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.49
PRK15386	426	type III secretion protein GogB; Provisional	97.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.31
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.2
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.15
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.08
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.01
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.65
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.62
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.13
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.02
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.76
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.49
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.45
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.37
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.17
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.8
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	92.2
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	91.58
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.02
smart00370	26	LRR Leucine-rich repeats, outliers.	90.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.04
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.18

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.65  E-value=3.7e-16  Score=138.53  Aligned_cols=127  Identities=20%  Similarity=0.123  Sum_probs=53.0

Q ss_pred             CceEEEeec-cCc-cCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786           56 YLQRLYLTG-NMK-KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW  133 (210)
Q Consensus        56 ~L~~L~l~~-~~~-~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  133 (210)
                      +|++|++.+ .+. .+|..++.+++|++|++++|.+....+..++.+++|++|+++++.....++.....+++|+.|++.
T Consensus       213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  292 (968)
T PLN00113        213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS  292 (968)
T ss_pred             CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence            455555544 333 245455555555555555555444434445555555555554221111111122233445555554


Q ss_pred             ccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeec
Q 039786          134 DFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAG  182 (210)
Q Consensus       134 ~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~  182 (210)
                      ++......+.....+++|+.|++.+|.....+|..+..+++|+.|++.+
T Consensus       293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  341 (968)
T PLN00113        293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS  341 (968)
T ss_pred             CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence            4332112222222334444444444432223333333344444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.64  E-value=5.1e-16  Score=137.63  Aligned_cols=179  Identities=18%  Similarity=0.143  Sum_probs=99.3

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCc-cCChhhhcCCCcc
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNLI   80 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~p~~~~~l~~L~   80 (210)
                      +++|++|++++ +.....++..++.+++|++|++++|......+ ..+..++ +|++|++.+ .+. .+|..++.+++|+
T Consensus       139 l~~L~~L~Ls~-n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        139 IPNLETLDLSN-NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             cCCCCEEECcC-CcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            34444444443 22223344555666666666666544322221 2344444 566666655 333 3555666666666


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      +|++++|.+....+..++.+++|++|+++++.....++.....+++|+.|++.++......+.....+++|+.|++++|.
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            66666666555445556666666666666333222233334455667777766654333334344456777777777776


Q ss_pred             CCCcccccccccccccceeeecch
Q 039786          161 LLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       161 ~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ....+|..+..+++|+.|++.++.
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCc
Confidence            444566666777777777776653

>PLN03210 Resistant to P

Probab=99.44  E-value=4.5e-13  Score=120.37  Aligned_cols=173  Identities=23%  Similarity=0.298  Sum_probs=96.3

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCChhhhcCCCccE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLPDWIFKLKNLIR   81 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p~~~~~l~~L~~   81 (210)
                      .+|++|++.+  .....++..+..+++|+.++++++......+  .+..++ +|+.|++.+  .+..+|..++.+++|+.
T Consensus       611 ~~L~~L~L~~--s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~-~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        611 ENLVKLQMQG--SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMAT-NLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             cCCcEEECcC--ccccccccccccCCCCCEEECCCCCCcCcCC--ccccCC-cccEEEecCCCCccccchhhhccCCCCE
Confidence            4566666654  2333445555667777777776654333322  244444 677777765  34556767777777777


Q ss_pred             EEEEeec-CCCcchhhhhcCCCccEEEecCccCCcceE--------------------ec--------------------
Q 039786           82 LGLELSG-LAEEPIRVLQASPNLLEILLTGTYDYELFH--------------------FE--------------------  120 (210)
Q Consensus        82 L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--------------------~~--------------------  120 (210)
                      |++++|. +...+.  ..++++|+.|++++|.....++                    ..                    
T Consensus       686 L~L~~c~~L~~Lp~--~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~  763 (1153)
T PLN03210        686 LDMSRCENLEILPT--GINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW  763 (1153)
T ss_pred             EeCCCCCCcCccCC--cCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence            7777764 333221  1145555555555332111110                    00                    


Q ss_pred             ----------CCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          121 ----------AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       121 ----------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                                ...+++|+.|++.+|+.+..+|...+.+++|+.|++.+|..++.+|.++ .+++|++|++++|.
T Consensus       764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence                      0012355556666555555555555667777777777777677777665 56677777776653

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.43  E-value=7.6e-13  Score=118.91  Aligned_cols=107  Identities=18%  Similarity=0.149  Sum_probs=64.0

Q ss_pred             CCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceee---------------
Q 039786           77 KNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV---------------  141 (210)
Q Consensus        77 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---------------  141 (210)
                      ++|+.|++++|......+..++++++|+.|++++|.....++... .+++|+.|++.+|..+..+               
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT  856 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence            355556666554323334456777777887777665444443222 4566777777766554332               


Q ss_pred             -----EEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          142 -----IIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       142 -----~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                           |...+.+++|+.|++.+|+.++.+|..+..+++|+.+++.+|+
T Consensus       857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence                 2223345667777777777676676666667777777777765

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.29  E-value=4.3e-14  Score=115.16  Aligned_cols=178  Identities=17%  Similarity=0.167  Sum_probs=139.7

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      .|++|.+|+++++......+|.++..+.||..++++.|+....  ++++-.++ +|++|+|++ .++.+...++.+.+|+
T Consensus       195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v--Pecly~l~-~LrrLNLS~N~iteL~~~~~~W~~lE  271 (1255)
T KOG0444|consen  195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV--PECLYKLR-NLRRLNLSGNKITELNMTEGEWENLE  271 (1255)
T ss_pred             cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc--hHHHhhhh-hhheeccCcCceeeeeccHHHHhhhh
Confidence            4677888888875556677888899999999999998766433  34555666 899999998 8888877788889999


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC  159 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~  159 (210)
                      +|+++.|.++.. +..+.+++.|+.|.+. +...-+.++.+.+.+..|+.+..+++ .++-+|.....++.|+.|.++.|
T Consensus       272 tLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  272 TLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN  349 (1255)
T ss_pred             hhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc
Confidence            999999987665 4677899999988886 44444556777777788888877653 46666766777899999999977


Q ss_pred             CCCCcccccccccccccceeeecchH
Q 039786          160 PLLMEIPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       160 ~~l~~lp~~l~~l~~L~~l~l~~~~~  185 (210)
                      . +-.+|.+|-.++.|+.|+++.++.
T Consensus       350 r-LiTLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  350 R-LITLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             c-eeechhhhhhcCCcceeeccCCcC
Confidence            7 777899999999999999998764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.27  E-value=2.3e-14  Score=99.20  Aligned_cols=150  Identities=21%  Similarity=0.253  Sum_probs=82.6

Q ss_pred             CCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786           28 LKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI  106 (210)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  106 (210)
                      +.+++.|.++++... ..+ ..++.+. +|+.|++.+ .++.+|..++.++.|++|++.-|++... +..+|.+|.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vp-pnia~l~-nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l-prgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVP-PNIAELK-NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecC-CcHHHhh-hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC-ccccCCCchhhhh
Confidence            455566666664322 111 1244444 666666665 5666666666667777776666654332 3455666777777


Q ss_pred             Eec-CccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786          107 LLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       107 ~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~  183 (210)
                      +++ +......++-....+..|+.|-+.+.. .+.+|...+.+++|+.|.+.+|+ +-++|..++.+..|++|.+.++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccc
Confidence            666 333222222222222444555554433 34455556666666666666666 4456666666666666666663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.26  E-value=3.3e-12  Score=103.36  Aligned_cols=155  Identities=17%  Similarity=0.195  Sum_probs=87.6

Q ss_pred             hhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhhcCCC
Q 039786           25 IANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQASPN  102 (210)
Q Consensus        25 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  102 (210)
                      ++-++.|++||++.| .+.+.+...+..-+ ++++|+|.+ .++.+. ..+..+.+|..|.|+.|+++..+...+..+|.
T Consensus       145 L~~l~alrslDLSrN-~is~i~~~sfp~~~-ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~  222 (873)
T KOG4194|consen  145 LSALPALRSLDLSRN-LISEIPKPSFPAKV-NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK  222 (873)
T ss_pred             HHhHhhhhhhhhhhc-hhhcccCCCCCCCC-CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence            333444444444442 22233333343333 788888887 677653 35667788888888888888888888888999


Q ss_pred             ccEEEec-CccCCcce-EecCCCCCcccEEEecccCc--ceeeEEc-------------------cC---CCCcccEEEe
Q 039786          103 LLEILLT-GTYDYELF-HFEAGWFPKLQKLLLWDFIA--VKSVIIE-------------------KG---AVPDIRELRI  156 (210)
Q Consensus       103 L~~L~l~-~~~~~~~~-~~~~~~~~~L~~L~l~~~~~--l~~~~~~-------------------~~---~~~~L~~L~i  156 (210)
                      |+.|++. +..  +.. ...+.++++|+.|.+..+..  +..-.|.                   .+   .++.|++|++
T Consensus       223 L~~LdLnrN~i--rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l  300 (873)
T KOG4194|consen  223 LESLDLNRNRI--RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL  300 (873)
T ss_pred             hhhhhccccce--eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhcc
Confidence            9988886 322  111 12344556666665543321  1110110                   01   2455666666


Q ss_pred             ccCCCCCcccccccccccccceeeecc
Q 039786          157 GPCPLLMEIPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       157 ~~~~~l~~lp~~l~~l~~L~~l~l~~~  183 (210)
                      ++|..-+.-++++...++|++|+++++
T Consensus       301 S~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  301 SYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             chhhhheeecchhhhcccceeEecccc
Confidence            666533444555666666666666664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.18  E-value=1e-11  Score=100.56  Aligned_cols=175  Identities=17%  Similarity=0.186  Sum_probs=91.5

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L   79 (210)
                      ++++|+++++..  .....+|.+.+...+|++|++.+| .+....-+.++.++ -|+.|+|+. .++.+|. .+..-.++
T Consensus       100 nl~nLq~v~l~~--N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~-alrslDLSrN~is~i~~~sfp~~~ni  175 (873)
T KOG4194|consen  100 NLPNLQEVNLNK--NELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALP-ALRSLDLSRNLISEIPKPSFPAKVNI  175 (873)
T ss_pred             cCCcceeeeecc--chhhhcccccccccceeEEeeecc-ccccccHHHHHhHh-hhhhhhhhhchhhcccCCCCCCCCCc
Confidence            355566666543  333334444444455666666552 33322223344445 566666665 5555543 22333567


Q ss_pred             cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceee-EEccCCCCcccEEEecc
Q 039786           80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV-IIEKGAVPDIRELRIGP  158 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~  158 (210)
                      ++|+|.+|.|+......+..+.+|..|.+++..........+..+|+|+.|++..+. ++.+ ......+++|+.|.+..
T Consensus       176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqr  254 (873)
T KOG4194|consen  176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQR  254 (873)
T ss_pred             eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhh
Confidence            777777777777666667777777777776332222122223345667777765432 2222 11123466677777776


Q ss_pred             CCCCCcccccc-cccccccceeeec
Q 039786          159 CPLLMEIPIGI-EHLKNLKLLKFAG  182 (210)
Q Consensus       159 ~~~l~~lp~~l-~~l~~L~~l~l~~  182 (210)
                      |. ++.+.+|+ ..+.++++|++..
T Consensus       255 N~-I~kL~DG~Fy~l~kme~l~L~~  278 (873)
T KOG4194|consen  255 ND-ISKLDDGAFYGLEKMEHLNLET  278 (873)
T ss_pred             cC-cccccCcceeeecccceeeccc
Confidence            66 44444443 3455555555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.17  E-value=3.4e-13  Score=93.44  Aligned_cols=161  Identities=27%  Similarity=0.280  Sum_probs=119.3

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccE
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIR   81 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~   81 (210)
                      +.++..|.+++  .....+++.++.+.+|+.|.++++. ++..+ ..+..++ +|+.|++.- .+..+|..++.++.|+.
T Consensus        32 ~s~ITrLtLSH--NKl~~vppnia~l~nlevln~~nnq-ie~lp-~~issl~-klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   32 MSNITRLTLSH--NKLTVVPPNIAELKNLEVLNLSNNQ-IEELP-TSISSLP-KLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhhccc--CceeecCCcHHHhhhhhhhhcccch-hhhcC-hhhhhch-hhhheecchhhhhcCccccCCCchhhh
Confidence            45566777775  4556667888999999999998854 44433 3467777 899999876 67778999999999999


Q ss_pred             EEEEeecCCCcc-hhhhhcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786           82 LGLELSGLAEEP-IRVLQASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC  159 (210)
Q Consensus        82 L~l~~~~l~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~  159 (210)
                      ||++.|.++... ++.+-.|+.|+.|.++ +.+  +.++...+.+.+|+.|.+.+.. +-.+|-+.+.+.+|++|+|.+|
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccc
Confidence            999998876643 3455667778777776 332  3344455778888988888754 4456777888999999999988


Q ss_pred             CCCCccccccccc
Q 039786          160 PLLMEIPIGIEHL  172 (210)
Q Consensus       160 ~~l~~lp~~l~~l  172 (210)
                      . +.-+|..++.+
T Consensus       184 r-l~vlppel~~l  195 (264)
T KOG0617|consen  184 R-LTVLPPELANL  195 (264)
T ss_pred             e-eeecChhhhhh
Confidence            8 77788776655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.02  E-value=1.5e-11  Score=100.66  Aligned_cols=180  Identities=20%  Similarity=0.194  Sum_probs=108.8

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccc----------------------cccccccCCccCceE
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEI----------------------LDLLSLSSPPQYLQR   59 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----------------------~~~~~~~~~~~~L~~   59 (210)
                      .|+.||.+.+..+.-....+|+.+-.+..|..|++++|...+.                      ++-.-+..+. .|-+
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt-DLLf  154 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT-DLLF  154 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH-hHhh
Confidence            4566666666553334455566666677777777776543221                      1111112222 3456


Q ss_pred             EEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccC-CcceEec-----------------
Q 039786           60 LYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYD-YELFHFE-----------------  120 (210)
Q Consensus        60 L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-----------------  120 (210)
                      |+|+. .++.+|.-+..+.+|++|.+++|.+...-+..+..|++|+.|.+++..- ...++.+                 
T Consensus       155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L  234 (1255)
T KOG0444|consen  155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL  234 (1255)
T ss_pred             hccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence            66666 6667777777777888888888776555455555666666666653211 1111111                 


Q ss_pred             ------CCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          121 ------AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       121 ------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                            ....++|+.|+++++. ++.+....+.+.+|++|.++.|. ++.+|+.+..+++|+.|++.++.
T Consensus       235 p~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  235 PIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             CcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCc
Confidence                  2234566666666532 44444455667888888888877 78899999999999998887764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.96  E-value=2.2e-10  Score=89.52  Aligned_cols=129  Identities=18%  Similarity=0.128  Sum_probs=56.6

Q ss_pred             CceEEEeec-cCcc-----CChhhhcCCCccEEEEEeecCCCcchh----hhhcCCCccEEEecCccCCc----ceEecC
Q 039786           56 YLQRLYLTG-NMKK-----LPDWIFKLKNLIRLGLELSGLAEEPIR----VLQASPNLLEILLTGTYDYE----LFHFEA  121 (210)
Q Consensus        56 ~L~~L~l~~-~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~----~~~~~~  121 (210)
                      +|++|++.+ .++.     ++..+..+++|++|++++|.++.....    .+..+++|++|+++++....    .+....
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~  217 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL  217 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence            555665555 3331     222334445566666666555433222    22334466666665332110    011112


Q ss_pred             CCCCcccEEEecccCcceeeEEc-cC----CCCcccEEEeccCCCC----Ccccccccccccccceeeecch
Q 039786          122 GWFPKLQKLLLWDFIAVKSVIIE-KG----AVPDIRELRIGPCPLL----MEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~-~~----~~~~L~~L~i~~~~~l----~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ..+++|+.|++.++......... ..    ..+.|++|++.+|...    ..+...+..+++|+++++.++.
T Consensus       218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            33456666666654321100000 00    1256666666666521    1122333444566666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=3.8e-10  Score=88.52  Aligned_cols=157  Identities=18%  Similarity=0.230  Sum_probs=73.9

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccc-cCCccCceEEEeec-cCcc-CCh-hhhcCC
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSL-SSPPQYLQRLYLTG-NMKK-LPD-WIFKLK   77 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~-~~~~-~p~-~~~~l~   77 (210)
                      ++.+||++.+.++.........-...+++++.|+++.+-.....++..+ ..+| +|+.|+++. .+.. +.. .-..++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLP-SLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcc-cchhcccccccccCCccccchhhhh
Confidence            4556666666651111111112345567777777776543333222222 3445 677777765 3222 110 123556


Q ss_pred             CccEEEEEeecCCCcchhhh-hcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceee-EEccCCCCcccEE
Q 039786           78 NLIRLGLELSGLAEEPIRVL-QASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV-IIEKGAVPDIREL  154 (210)
Q Consensus        78 ~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L  154 (210)
                      +|+.|.+++|+++-.++..+ ..+|+|+.|.+. |.. .-.-..+...+..|+.|+++++..+..- ....+.+|.|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~-~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI-ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc-cceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            77777777777665444433 366777777765 321 1111112233455566666554432211 1123345555555


Q ss_pred             EeccCC
Q 039786          155 RIGPCP  160 (210)
Q Consensus       155 ~i~~~~  160 (210)
                      .+..|.
T Consensus       277 nls~tg  282 (505)
T KOG3207|consen  277 NLSSTG  282 (505)
T ss_pred             hccccC
Confidence            555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=5.1e-10  Score=87.80  Aligned_cols=179  Identities=18%  Similarity=0.150  Sum_probs=114.7

Q ss_pred             CCCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc--CChhhhcCC
Q 039786            2 KLRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK--LPDWIFKLK   77 (210)
Q Consensus         2 ~L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~--~p~~~~~l~   77 (210)
                      .++++|.|+++. -.-....+.....++++|+.|.++.|......+-..-..++ +|+.|.+++ .++.  +-.....+|
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~-~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS-HLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh-hhheEEeccCCCCHHHHHHHHHhCC
Confidence            478999999987 33345666777888999999999987554332211112344 899999987 4442  333446789


Q ss_pred             CccEEEEEeec-CCCcchhhhhcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceeeEE-cc------CCC
Q 039786           78 NLIRLGLELSG-LAEEPIRVLQASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVII-EK------GAV  148 (210)
Q Consensus        78 ~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~------~~~  148 (210)
                      +|+.|++..|. +... ......+..|+.|+|+ +......-....+.||.|..|++..+. +.++.+ ..      ..|
T Consensus       223 sl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTF  300 (505)
T ss_pred             cHHHhhhhccccccee-cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhccc
Confidence            99999999984 2221 1223456778889998 333222222345678888888887654 233221 11      358


Q ss_pred             CcccEEEeccCCCCCcccc--cccccccccceeeecch
Q 039786          149 PDIRELRIGPCPLLMEIPI--GIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       149 ~~L~~L~i~~~~~l~~lp~--~l~~l~~L~~l~l~~~~  184 (210)
                      ++|++|.+..|+ ++++++  .+..+++|+.+.+....
T Consensus       301 ~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  301 PKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             ccceeeecccCc-cccccccchhhccchhhhhhccccc
Confidence            999999999988 444432  34566778887776654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.85  E-value=5.3e-10  Score=87.32  Aligned_cols=181  Identities=17%  Similarity=0.063  Sum_probs=95.3

Q ss_pred             CCCCcEEEEEe-cC----CCcchHHHHhhcCCCCceEEEEecCcccccc--cccccCCccCceEEEeec-cCcc-----C
Q 039786            3 LRQLRKLSIRP-QN----GNGKDLCGLIANLKNLESLTVEMTSKEEILD--LLSLSSPPQYLQRLYLTG-NMKK-----L   69 (210)
Q Consensus         3 L~~L~~L~l~~-~~----~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~-~~~~-----~   69 (210)
                      .++|++|+++. ..    .....++..++.+++|+.|++++|.......  +..+...+ +|++|++.+ .++.     +
T Consensus        50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~l  128 (319)
T cd00116          50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSS-SLQELKLNNNGLGDRGLRLL  128 (319)
T ss_pred             CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccC-cccEEEeeCCccchHHHHHH
Confidence            35567777665 11    1113344566667777777777755432111  11111112 477777776 4442     2


Q ss_pred             ChhhhcC-CCccEEEEEeecCCCcch----hhhhcCCCccEEEecCccCC-cceE---ecCCCCCcccEEEecccCccee
Q 039786           70 PDWIFKL-KNLIRLGLELSGLAEEPI----RVLQASPNLLEILLTGTYDY-ELFH---FEAGWFPKLQKLLLWDFIAVKS  140 (210)
Q Consensus        70 p~~~~~l-~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~-~~~~---~~~~~~~~L~~L~l~~~~~l~~  140 (210)
                      ...+..+ ++|+.|++++|.++....    ..+..+++|+.|+++.+.-. ..+.   .....+++|+.|++.+|.....
T Consensus       129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            2234455 777888888777664322    23445667788877633221 1111   1122345788888877642111


Q ss_pred             ----eEEccCCCCcccEEEeccCCCCCc-ccccc-cc----cccccceeeecchH
Q 039786          141 ----VIIEKGAVPDIRELRIGPCPLLME-IPIGI-EH----LKNLKLLKFAGMVK  185 (210)
Q Consensus       141 ----~~~~~~~~~~L~~L~i~~~~~l~~-lp~~l-~~----l~~L~~l~l~~~~~  185 (210)
                          +......+++|++|++++|. ++. ....+ ..    .++|++|++.+|..
T Consensus       209 ~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         209 GASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence                11122346778888888876 332 11111 12    36888888888753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.84  E-value=1.1e-11  Score=96.26  Aligned_cols=178  Identities=21%  Similarity=0.199  Sum_probs=107.1

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCc----------------------cCceE
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPP----------------------QYLQR   59 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----------------------~~L~~   59 (210)
                      .+.+|++++++.  .....++++++.+..++.++..+++.....  +++..+.                      +.|++
T Consensus       112 s~~~l~~l~~s~--n~~~el~~~i~~~~~l~dl~~~~N~i~slp--~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~  187 (565)
T KOG0472|consen  112 SLISLVKLDCSS--NELKELPDSIGRLLDLEDLDATNNQISSLP--EDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKH  187 (565)
T ss_pred             hhhhhhhhhccc--cceeecCchHHHHhhhhhhhccccccccCc--hHHHHHHHHHHhhccccchhhCCHHHHHHHHHHh
Confidence            456778888875  445566777788888888877765432211  1222222                      13444


Q ss_pred             EEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecC-CCCCcccEEEecccCc
Q 039786           60 LYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEA-GWFPKLQKLLLWDFIA  137 (210)
Q Consensus        60 L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~  137 (210)
                      |+... -++.+|..++.+.+|.-|+++.|++...+  .++++..|+.+.+.... .+.++... ..++++.+|++.++. 
T Consensus       188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-  263 (565)
T KOG0472|consen  188 LDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-  263 (565)
T ss_pred             cccchhhhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-
Confidence            44443 33445555555555555555555544422  44555555555443111 11111111 245677888887653 


Q ss_pred             ceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecchHHHHH
Q 039786          138 VKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVKQVYY  189 (210)
Q Consensus       138 l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~~~~~~  189 (210)
                      +.++|.+.--+.+|++|++++|. ++.+|..++++ .|+.+.+.++|...++
T Consensus       264 lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  264 LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHH
Confidence            66777766667889999999888 88899999999 9999999998865543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.77  E-value=5e-11  Score=100.84  Aligned_cols=171  Identities=23%  Similarity=0.298  Sum_probs=102.1

Q ss_pred             CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCccccccc-------------------ccc-----cCCccCceEE
Q 039786            5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDL-------------------LSL-----SSPPQYLQRL   60 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-------------------~~~-----~~~~~~L~~L   60 (210)
                      +|+.|.+..  .....+++.+++++.|++|+++.+......+.                   ...     ..++ .|+.|
T Consensus       288 ~L~~l~~~~--nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~-~Lq~L  364 (1081)
T KOG0618|consen  288 SLVSLSAAY--NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA-ALQEL  364 (1081)
T ss_pred             hHHHHHhhh--hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhH-HHHHH
Confidence            344444432  33444556666677788888877554322110                   000     0112 35555


Q ss_pred             Eeec-cCcc--CChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCc
Q 039786           61 YLTG-NMKK--LPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIA  137 (210)
Q Consensus        61 ~l~~-~~~~--~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  137 (210)
                      .+.+ .++.  +| .+..+++|+.|+++.|.+..++-..+.+++.|+.|.+++.. ...++.....++.|++|....+ .
T Consensus       365 ylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN-~  441 (1081)
T KOG0618|consen  365 YLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSN-Q  441 (1081)
T ss_pred             HHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCC-c
Confidence            5555 4443  44 45566788888888887777776777788888888876321 2334445556677777764432 2


Q ss_pred             ceeeEEccCCCCcccEEEeccCCCCCc--ccccccccccccceeeecch
Q 039786          138 VKSVIIEKGAVPDIRELRIGPCPLLME--IPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       138 l~~~~~~~~~~~~L~~L~i~~~~~l~~--lp~~l~~l~~L~~l~l~~~~  184 (210)
                      +..+| +...++.|+.+|++.|. ++.  +|.... .++|++|++++++
T Consensus       442 l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  442 LLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             eeech-hhhhcCcceEEecccch-hhhhhhhhhCC-CcccceeeccCCc
Confidence            34444 66778999999999887 442  333221 2899999999987

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.76  E-value=4.7e-10  Score=95.14  Aligned_cols=172  Identities=22%  Similarity=0.185  Sum_probs=94.1

Q ss_pred             CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEE
Q 039786            5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLG   83 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~   83 (210)
                      +|.+++++.  .....+++-++.+.+|+.+.+..|.. ...+ ..+.... +|++|.... .++.+|...+.++.|++|+
T Consensus       242 nl~~~dis~--n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp-~ri~~~~-~L~~l~~~~nel~yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  242 NLQYLDISH--NNLSNLPEWIGACANLEALNANHNRL-VALP-LRISRIT-SLVSLSAAYNELEYIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             cceeeecch--hhhhcchHHHHhcccceEecccchhH-HhhH-HHHhhhh-hHHHHHhhhhhhhhCCCcccccceeeeee
Confidence            566666664  45555666677777777777776544 2222 2233333 677777766 6777777777788889999


Q ss_pred             EEeecCCCcchhhhhcCCC-ccEEEe------------------------cCccCCcceEecCCCCCcccEEEecccCcc
Q 039786           84 LELSGLAEEPIRVLQASPN-LLEILL------------------------TGTYDYELFHFEAGWFPKLQKLLLWDFIAV  138 (210)
Q Consensus        84 l~~~~l~~~~~~~l~~l~~-L~~L~l------------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  138 (210)
                      +..|.+...+...+..... |..|..                        .+..-.+.......+|++|+.|+++++. +
T Consensus       317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L  395 (1081)
T KOG0618|consen  317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-L  395 (1081)
T ss_pred             ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-c
Confidence            9888877765433332221 222222                        2111111112223445566666665432 3


Q ss_pred             eeeEEc-cCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786          139 KSVIIE-KGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       139 ~~~~~~-~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~  183 (210)
                      ..++.. ...++.|++|.+++|. ++.+|+.+..++.|++|...++
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCC
Confidence            333322 1235555666666665 5666666666666666655443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.76  E-value=2.5e-11  Score=94.31  Aligned_cols=175  Identities=22%  Similarity=0.224  Sum_probs=109.9

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      .+..++.++++.  .....++..++.+.++.+++++.+...+..+  .+..+. .+..++..+ .+..+|+.+..+.+|.
T Consensus        89 ~l~~l~~l~vs~--n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~--~i~~~~-~l~dl~~~~N~i~slp~~~~~~~~l~  163 (565)
T KOG0472|consen   89 ELEALKSLNVSH--NKLSELPEQIGSLISLVKLDCSSNELKELPD--SIGRLL-DLEDLDATNNQISSLPEDMVNLSKLS  163 (565)
T ss_pred             HHHHHHHhhccc--chHhhccHHHhhhhhhhhhhccccceeecCc--hHHHHh-hhhhhhccccccccCchHHHHHHHHH
Confidence            345667778875  5567788999999999999999876544322  333333 577776655 6777887777777777


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccC---------------------cce
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFI---------------------AVK  139 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------~l~  139 (210)
                      .+++.+|++...+...+. |+.|+.|+.. ....+.++...+++.+|..|.+..+.                     .+.
T Consensus       164 ~l~~~~n~l~~l~~~~i~-m~~L~~ld~~-~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~  241 (565)
T KOG0472|consen  164 KLDLEGNKLKALPENHIA-MKRLKHLDCN-SNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE  241 (565)
T ss_pred             HhhccccchhhCCHHHHH-HHHHHhcccc-hhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH
Confidence            777777776555443333 6666666653 22223333334444444444333221                     122


Q ss_pred             eeEEccC-CCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          140 SVIIEKG-AVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       140 ~~~~~~~-~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      -++.+.. .++++..|++.+|. ++++|+++..+.+|.+++++++.
T Consensus       242 ~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~  286 (565)
T KOG0472|consen  242 MLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND  286 (565)
T ss_pred             hhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc
Confidence            2222222 46777888888877 77888888888888888887764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.70  E-value=4.7e-09  Score=74.49  Aligned_cols=54  Identities=22%  Similarity=0.316  Sum_probs=14.9

Q ss_pred             CceEEEeec-cCccCChhh-hcCCCccEEEEEeecCCC-cchhhhhcCCCccEEEec
Q 039786           56 YLQRLYLTG-NMKKLPDWI-FKLKNLIRLGLELSGLAE-EPIRVLQASPNLLEILLT  109 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~-~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~  109 (210)
                      +|+.|.+++ .++.++..+ ..+++|+.|++++|.+.. ..+..+..+|+|+.|++.
T Consensus        65 ~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~  121 (175)
T PF14580_consen   65 RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE  121 (175)
T ss_dssp             T--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred             hhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence            455555544 444443322 234455555555444433 223344444445544444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.68  E-value=4.1e-08  Score=84.31  Aligned_cols=55  Identities=16%  Similarity=0.235  Sum_probs=38.6

Q ss_pred             CcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          125 PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       125 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ++|+.|++.++. +..++.   ...+|+.|++.+|. ++.+|..+..+++|+.|++.+++
T Consensus       402 s~L~~LdLS~N~-LssIP~---l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        402 SELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             cCCCEEEccCCc-CCCCCc---chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence            456666666543 333332   23467778888777 67889888899999999999975

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=3.7e-10  Score=84.86  Aligned_cols=178  Identities=21%  Similarity=0.227  Sum_probs=106.7

Q ss_pred             CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCcc--CChhhhcCCCcc
Q 039786            5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKK--LPDWIFKLKNLI   80 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~--~p~~~~~l~~L~   80 (210)
                      .|++|++++....-..+...+.+++.|+.|.+.+....... ...++.-. .|++|++..  .+++  +.--+..++.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I-~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI-VNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH-HHHHhccc-cceeeccccccccchhHHHHHHHhhhhHh
Confidence            36667777522223344455667777777777775442222 23345444 688888876  4443  222456778888


Q ss_pred             EEEEEeecCCCcchhhhh--cCCCccEEEecCcc---CCcceEecCCCCCcccEEEecccCcceee-EEccCCCCcccEE
Q 039786           81 RLGLELSGLAEEPIRVLQ--ASPNLLEILLTGTY---DYELFHFEAGWFPKLQKLLLWDFIAVKSV-IIEKGAVPDIREL  154 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L  154 (210)
                      .|+++.|.+..+.+..+.  --++|..|+++++.   ....+..-...+|.|..|+++++-.+..- ..+...|+.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            888888876555443322  22667777776332   11112222356788888888887655432 1223468889999


Q ss_pred             EeccCCCCCcccc---cccccccccceeeecchHH
Q 039786          155 RIGPCPLLMEIPI---GIEHLKNLKLLKFAGMVKQ  186 (210)
Q Consensus       155 ~i~~~~~l~~lp~---~l~~l~~L~~l~l~~~~~~  186 (210)
                      .++.|-.+  .|.   .+...|+|.+|++.+|-.+
T Consensus       344 SlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  344 SLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             ehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence            99888732  233   2356788999999987544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.65  E-value=3e-08  Score=85.22  Aligned_cols=75  Identities=19%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEE
Q 039786            5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLG   83 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~   83 (210)
                      +|+.|++++  .....++..+.  .+|+.|++++|.... .+ ..   ++.+|+.|++.+ .+..+|.++.  ++|+.|+
T Consensus       200 ~L~~L~Ls~--N~LtsLP~~l~--~nL~~L~Ls~N~Lts-LP-~~---l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~  268 (754)
T PRK15370        200 QITTLILDN--NELKSLPENLQ--GNIKTLYANSNQLTS-IP-AT---LPDTIQEMELSINRITELPERLP--SALQSLD  268 (754)
T ss_pred             CCcEEEecC--CCCCcCChhhc--cCCCEEECCCCcccc-CC-hh---hhccccEEECcCCccCcCChhHh--CCCCEEE
Confidence            577777775  22333444332  467777777654321 11 01   112455555555 4445554332  3455555


Q ss_pred             EEeecCC
Q 039786           84 LELSGLA   90 (210)
Q Consensus        84 l~~~~l~   90 (210)
                      +++|.++
T Consensus       269 Ls~N~L~  275 (754)
T PRK15370        269 LFHNKIS  275 (754)
T ss_pred             CcCCccC
Confidence            5555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=9.6e-09  Score=77.40  Aligned_cols=157  Identities=22%  Similarity=0.188  Sum_probs=101.0

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeecc-Cc-c-CChhhhcC-CC
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGN-MK-K-LPDWIFKL-KN   78 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~-~-~p~~~~~l-~~   78 (210)
                      +.+|+.|.+.+ ....+.+...++.-.+|+.++++.|+......+..+-..+..|.+|++.=+ +. . +...+.+. ++
T Consensus       209 C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  209 CSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HHhhhhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            45788888885 566777888888889999999998876554443322222226778877642 11 1 22223222 67


Q ss_pred             ccEEEEEeec--CCCcchhhhh-cCCCccEEEecCccCCc-ceEecCCCCCcccEEEecccCccee-eEEccCCCCcccE
Q 039786           79 LIRLGLELSG--LAEEPIRVLQ-ASPNLLEILLTGTYDYE-LFHFEAGWFPKLQKLLLWDFIAVKS-VIIEKGAVPDIRE  153 (210)
Q Consensus        79 L~~L~l~~~~--l~~~~~~~l~-~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~  153 (210)
                      |+.|+++++.  +....+..+. ..|+|..|+++.+.... ........|+.|+.+.++.|..+.. ...+.++.|.|.+
T Consensus       288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y  367 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY  367 (419)
T ss_pred             hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence            8888888875  2223333333 68888888888554322 1222345678888888888876542 3345667899999


Q ss_pred             EEeccCC
Q 039786          154 LRIGPCP  160 (210)
Q Consensus       154 L~i~~~~  160 (210)
                      |++.+|-
T Consensus       368 Ldv~g~v  374 (419)
T KOG2120|consen  368 LDVFGCV  374 (419)
T ss_pred             EEecccc
Confidence            9998886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.57  E-value=1.2e-07  Score=81.71  Aligned_cols=115  Identities=16%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD  134 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  134 (210)
                      +|+.|++++ .++.+|..+.  ++|+.|++++|.++..+. .+  .++|+.|+++++... .++  ...+++|+.|.+.+
T Consensus       263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~Lt-~LP--~~l~~sL~~L~Ls~  334 (754)
T PRK15370        263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSLT-ALP--ETLPPGLKTLEAGE  334 (754)
T ss_pred             CCCEEECcCCccCccccccC--CCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCccc-cCC--ccccccceeccccC
Confidence            455555554 4444544322  355555555555443221 11  124445554422111 111  11234566666655


Q ss_pred             cCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          135 FIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       135 ~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      |. +..++..  -.++|+.|++.+|. ++.+|..+  .++|++|++.+|.
T Consensus       335 N~-Lt~LP~~--l~~sL~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N~  378 (754)
T PRK15370        335 NA-LTSLPAS--LPPELQVLDVSKNQ-ITVLPETL--PPTITTLDVSRNA  378 (754)
T ss_pred             Cc-cccCChh--hcCcccEEECCCCC-CCcCChhh--cCCcCEEECCCCc
Confidence            43 2333221  13567777777776 55666554  3578888887764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.49  E-value=1.7e-09  Score=84.00  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=17.4

Q ss_pred             CCcccEEEeccCCCCCcc-cccccccccccceeeecchH
Q 039786          148 VPDIRELRIGPCPLLMEI-PIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       148 ~~~L~~L~i~~~~~l~~l-p~~l~~l~~L~~l~l~~~~~  185 (210)
                      +++|++|++++|. ++.+ +.+++.++++++|.+.++..
T Consensus       273 L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l  310 (498)
T KOG4237|consen  273 LPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKL  310 (498)
T ss_pred             cccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchH
Confidence            3555555555554 2222 22234455555555555444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.46  E-value=1.7e-07  Score=54.82  Aligned_cols=55  Identities=27%  Similarity=0.355  Sum_probs=40.0

Q ss_pred             CceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecC
Q 039786           56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTG  110 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  110 (210)
                      +|++|++.+ .++.+|. ++..+++|++|++++|.++..+...+.++++|++|++++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence            677777777 6666653 667777888888887777766666777777777777763

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.45  E-value=2.5e-07  Score=65.73  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=18.4

Q ss_pred             CCCcccEEEeccCCCCCcccc----cccccccccceeeecchH
Q 039786          147 AVPDIRELRIGPCPLLMEIPI----GIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       147 ~~~~L~~L~i~~~~~l~~lp~----~l~~l~~L~~l~l~~~~~  185 (210)
                      .+++|+.|++.+|| +...+.    .+..+|+|+.||-.....
T Consensus       111 ~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen  111 SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred             cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence            46777777777777 322222    245678888887766543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.44  E-value=1.6e-07  Score=82.11  Aligned_cols=83  Identities=28%  Similarity=0.266  Sum_probs=36.9

Q ss_pred             hhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCc
Q 039786           25 IANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNL  103 (210)
Q Consensus        25 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  103 (210)
                      +..++.|+.|++++|......+ ..+..+. +|++|++.+ .++.+|..++.+..|.+|++..+............+++|
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP-~~I~~Li-~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLP-SSIGELV-HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCC-hHHhhhh-hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence            4445555555555433222221 2233343 455555555 455555555555555555555443212222233335555


Q ss_pred             cEEEec
Q 039786          104 LEILLT  109 (210)
Q Consensus       104 ~~L~l~  109 (210)
                      ++|.+.
T Consensus       645 r~L~l~  650 (889)
T KOG4658|consen  645 RVLRLP  650 (889)
T ss_pred             cEEEee
Confidence            555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.41  E-value=1.2e-07  Score=82.87  Aligned_cols=81  Identities=27%  Similarity=0.268  Sum_probs=38.6

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCChhhhcCCCcc
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p~~~~~l~~L~   80 (210)
                      |+.|++|++++ +.....+|++++.+-+|++|+++++... ..+ .++..+. +|.+|++..  ....+|.....+++|+
T Consensus       570 m~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP-~~l~~Lk-~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  570 LPLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGIS-HLP-SGLGNLK-KLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             CcceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCcc-ccc-hHHHHHH-hhheeccccccccccccchhhhccccc
Confidence            45555555553 3444555555555555555555553322 111 2233333 455555554  2222343444455555


Q ss_pred             EEEEEee
Q 039786           81 RLGLELS   87 (210)
Q Consensus        81 ~L~l~~~   87 (210)
                      +|.+...
T Consensus       646 ~L~l~~s  652 (889)
T KOG4658|consen  646 VLRLPRS  652 (889)
T ss_pred             EEEeecc
Confidence            5555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.40  E-value=4.2e-08  Score=74.21  Aligned_cols=96  Identities=21%  Similarity=0.263  Sum_probs=54.9

Q ss_pred             CcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEE
Q 039786            6 LRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGL   84 (210)
Q Consensus         6 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l   84 (210)
                      |+.+++++  .....+-.++.-.+.++.|+++.|....   +..++.++ +|++|++++ .++.+..|...+-++++|.+
T Consensus       286 LtelDLS~--N~I~~iDESvKL~Pkir~L~lS~N~i~~---v~nLa~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  286 LTELDLSG--NLITQIDESVKLAPKLRRLILSQNRIRT---VQNLAELP-QLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhccccc--cchhhhhhhhhhccceeEEeccccceee---ehhhhhcc-cceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            45566654  2233334444555666666666643322   22345555 677777766 55566666666667777777


Q ss_pred             EeecCCCcchhhhhcCCCccEEEec
Q 039786           85 ELSGLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        85 ~~~~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      ..|.+..  +..++++-+|.+|+++
T Consensus       360 a~N~iE~--LSGL~KLYSLvnLDl~  382 (490)
T KOG1259|consen  360 AQNKIET--LSGLRKLYSLVNLDLS  382 (490)
T ss_pred             hhhhHhh--hhhhHhhhhheecccc
Confidence            6665433  4455566666666665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=5.9e-08  Score=73.20  Aligned_cols=83  Identities=16%  Similarity=0.235  Sum_probs=63.0

Q ss_pred             CCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEecCcccccccccc-cCCccCceEEEeec-cC--ccCChhhhcCC
Q 039786            3 LRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSL-SSPPQYLQRLYLTG-NM--KKLPDWIFKLK   77 (210)
Q Consensus         3 L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~-~~--~~~p~~~~~l~   77 (210)
                      .++++.+++.+ ......++...+.++++|+.|.++.|.....+.  .. .+.. +|+.|-++| ++  +........+|
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~-nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLK-NLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCccccc-ceEEEEEcCCCCChhhhhhhhhcch
Confidence            45778888888 556788888889999999999999987755543  33 2444 899999998 44  34566677788


Q ss_pred             CccEEEEEeec
Q 039786           78 NLIRLGLELSG   88 (210)
Q Consensus        78 ~L~~L~l~~~~   88 (210)
                      .++.|+++.|.
T Consensus       147 ~vtelHmS~N~  157 (418)
T KOG2982|consen  147 KVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhccch
Confidence            88888888873

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.33  E-value=1.7e-07  Score=71.96  Aligned_cols=182  Identities=17%  Similarity=0.201  Sum_probs=113.7

Q ss_pred             CCCcEEEEEe---cCCCcchHHHHhhcCCCCceEEEEecCcccccc-----------cccccCCccCceEEEeec-cCcc
Q 039786            4 RQLRKLSIRP---QNGNGKDLCGLIANLKNLESLTVEMTSKEEILD-----------LLSLSSPPQYLQRLYLTG-NMKK   68 (210)
Q Consensus         4 ~~L~~L~l~~---~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----------~~~~~~~~~~L~~L~l~~-~~~~   68 (210)
                      ++|++|++|+   .-.....+-+.+.++..|++|++.+|...+...           ...-.+.+++|+.+..+. .+..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            5788999987   222344445666778899999998887643221           111122233788888776 4443


Q ss_pred             C-----ChhhhcCCCccEEEEEeecCCCcch----hhhhcCCCccEEEec-CccCCc---ceEecCCCCCcccEEEeccc
Q 039786           69 L-----PDWIFKLKNLIRLGLELSGLAEEPI----RVLQASPNLLEILLT-GTYDYE---LFHFEAGWFPKLQKLLLWDF  135 (210)
Q Consensus        69 ~-----p~~~~~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~-~~~~~~---~~~~~~~~~~~L~~L~l~~~  135 (210)
                      -     ...+...+.|+.+.+..|.|.....    ..+..+|.|+.|+|. |.+...   .+......+++|+.+.+.+|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            2     2345667899999999988766554    345578999999997 443221   11122345678888888887


Q ss_pred             CcceeeEE-----ccCCCCcccEEEeccCCCCC----cccccccccccccceeeecchH
Q 039786          136 IAVKSVII-----EKGAVPDIRELRIGPCPLLM----EIPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       136 ~~l~~~~~-----~~~~~~~L~~L~i~~~~~l~----~lp~~l~~l~~L~~l~l~~~~~  185 (210)
                      .--..-..     -....|+|+.|.+.+|....    .+...+...+.|+.|.+.+|..
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            52111100     11247889999999888432    1233345578899999988764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.28  E-value=8.1e-08  Score=72.72  Aligned_cols=123  Identities=19%  Similarity=0.163  Sum_probs=55.8

Q ss_pred             ceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEeccc
Q 039786           57 LQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDF  135 (210)
Q Consensus        57 L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  135 (210)
                      |+++++++ .++.+...+.-.|.++.|+++.|.++.  ...+..+++|..|++++....+ +.-....+-++++|.++++
T Consensus       286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhccccccchhhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhh
Confidence            33444443 333333344444555555555554433  2334455555555554221110 0001112334445544432


Q ss_pred             CcceeeEEccCCCCcccEEEeccCCCCCcc--cccccccccccceeeecchH
Q 039786          136 IAVKSVIIEKGAVPDIRELRIGPCPLLMEI--PIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       136 ~~l~~~~~~~~~~~~L~~L~i~~~~~l~~l--p~~l~~l~~L~~l~l~~~~~  185 (210)
                      . ++.+ ...+.+-+|..|++.+|. +..+  -.+++++|.|+.+.+.++|.
T Consensus       363 ~-iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  363 K-IETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             h-Hhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCc
Confidence            1 1111 112245566777777665 2222  23567777777777777663

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.28  E-value=9.7e-07  Score=76.08  Aligned_cols=83  Identities=13%  Similarity=0.081  Sum_probs=50.1

Q ss_pred             CccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEec
Q 039786           78 NLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIG  157 (210)
Q Consensus        78 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~  157 (210)
                      +|+.|++++|.++..+.    ..++|+.|+++++... .++   ..+.+|+.|++.++. +..+|.....+++|+.|+++
T Consensus       383 ~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~Ls-sIP---~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLTSLPV----LPSELKELMVSGNRLT-SLP---MLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCcccCCCC----cccCCCEEEccCCcCC-CCC---cchhhhhhhhhccCc-ccccChHHhhccCCCeEECC
Confidence            56666666666554321    2356777777633221 122   123467788887654 55666666778999999999


Q ss_pred             cCCCCCcccccc
Q 039786          158 PCPLLMEIPIGI  169 (210)
Q Consensus       158 ~~~~l~~lp~~l  169 (210)
                      +|+.....+..+
T Consensus       454 ~N~Ls~~~~~~L  465 (788)
T PRK15387        454 GNPLSERTLQAL  465 (788)
T ss_pred             CCCCCchHHHHH
Confidence            998443334433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.23  E-value=1.3e-06  Score=50.98  Aligned_cols=58  Identities=26%  Similarity=0.190  Sum_probs=39.2

Q ss_pred             CCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEeccc
Q 039786           77 KNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLWDF  135 (210)
Q Consensus        77 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~  135 (210)
                      |+|++|++++|.++..+...+.++++|++|+++++.- ..+.. ....+++|+.|++.++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCC
Confidence            5788888888888777777888888888888873322 22222 2355666677776654

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.18  E-value=1.8e-07  Score=76.17  Aligned_cols=154  Identities=19%  Similarity=0.192  Sum_probs=103.3

Q ss_pred             hHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhh
Q 039786           20 DLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQ   98 (210)
Q Consensus        20 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~   98 (210)
                      .++..++++..|..++++.|.... .+ ..++.+|  |+.|.+.+ +++.+|..++..+.|..|+.+.|.+... +..++
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~-lp-~~lC~lp--Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~sl-psql~  186 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSH-LP-DGLCDLP--LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSL-PSQLG  186 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhc-CC-hhhhcCc--ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhc-hHHhh
Confidence            346667777777888887754422 22 3455565  88888877 8888888888888899999988886443 45667


Q ss_pred             cCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccc---ccccc
Q 039786           99 ASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGI---EHLKN  174 (210)
Q Consensus        99 ~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l---~~l~~  174 (210)
                      .+.+|+.|.+. +..  ..++.....+ .|.+|+++ |..+..+|.....|..|++|.+.+|+ +..-|..+   +...=
T Consensus       187 ~l~slr~l~vrRn~l--~~lp~El~~L-pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHI  261 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHL--EDLPEELCSL-PLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHI  261 (722)
T ss_pred             hHHHHHHHHHhhhhh--hhCCHHHhCC-ceeeeecc-cCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceee
Confidence            88888888776 332  2233233333 47888888 55677888888888999999999888 65545443   23344


Q ss_pred             ccceeeecc
Q 039786          175 LKLLKFAGM  183 (210)
Q Consensus       175 L~~l~l~~~  183 (210)
                      -|+|+..-|
T Consensus       262 FKyL~~qA~  270 (722)
T KOG0532|consen  262 FKYLSTQAC  270 (722)
T ss_pred             eeeecchhc
Confidence            455555444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.18  E-value=1.4e-07  Score=73.71  Aligned_cols=84  Identities=23%  Similarity=0.242  Sum_probs=37.5

Q ss_pred             HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhc
Q 039786           23 GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQA   99 (210)
Q Consensus        23 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~   99 (210)
                      .+|+.+++|+.|++++| .++.+...+|..++ ++..|-+.+  +++.+|. .++.+..|+.|.+.-|++.......+..
T Consensus        85 ~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d  162 (498)
T KOG4237|consen   85 GAFKTLHRLRRLDLSKN-NISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD  162 (498)
T ss_pred             hhccchhhhceeccccc-chhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence            44555556666666553 33333334455554 444443333  4444443 3344444444444444443333334444


Q ss_pred             CCCccEEEe
Q 039786          100 SPNLLEILL  108 (210)
Q Consensus       100 l~~L~~L~l  108 (210)
                      +++|..|.+
T Consensus       163 L~~l~lLsl  171 (498)
T KOG4237|consen  163 LPSLSLLSL  171 (498)
T ss_pred             hhhcchhcc
Confidence            444443333

>PLN03150 hypothetical protein; Provisional

Probab=98.15  E-value=5.4e-06  Score=70.67  Aligned_cols=108  Identities=17%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             ceEEEeec-cCc-cCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786           57 LQRLYLTG-NMK-KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD  134 (210)
Q Consensus        57 L~~L~l~~-~~~-~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  134 (210)
                      ++.|+|.+ .+. .+|..++.+++|+.|+|++|.+....+..++.+++|+.|+++++.....++.....+++|+.|++.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56677766 554 3777778888888888888877666566778888888888874433333444556677888888877


Q ss_pred             cCcceeeEEccCC-CCcccEEEeccCCCCCc
Q 039786          135 FIAVKSVIIEKGA-VPDIRELRIGPCPLLME  164 (210)
Q Consensus       135 ~~~l~~~~~~~~~-~~~L~~L~i~~~~~l~~  164 (210)
                      +.....+|...+. +.++..+++.+|+.+-.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccC
Confidence            6543344433322 34556677776664433

>PLN03150 hypothetical protein; Provisional

Probab=98.11  E-value=4.7e-06  Score=71.08  Aligned_cols=106  Identities=19%  Similarity=0.107  Sum_probs=81.6

Q ss_pred             ccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEecc
Q 039786           79 LIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGP  158 (210)
Q Consensus        79 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~  158 (210)
                      ++.|+|.+|.+....+..++.+++|+.|+++++.....++.....+++|+.|++.++.....++...+.+++|+.|++.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            77889999988777777899999999999984433334444567789999999998765556676677899999999999


Q ss_pred             CCCCCccccccccc-ccccceeeecch
Q 039786          159 CPLLMEIPIGIEHL-KNLKLLKFAGMV  184 (210)
Q Consensus       159 ~~~l~~lp~~l~~l-~~L~~l~l~~~~  184 (210)
                      |.....+|..+... .++..+++.+++
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            98666788877543 456677777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.06  E-value=3.1e-05  Score=61.97  Aligned_cols=70  Identities=17%  Similarity=0.220  Sum_probs=44.6

Q ss_pred             hhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCChhhhcCCCccEEEEEeec-CCCcchhhhhcCC
Q 039786           25 IANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLPDWIFKLKNLIRLGLELSG-LAEEPIRVLQASP  101 (210)
Q Consensus        25 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~  101 (210)
                      +..+.++++|++++|.. ..     +..+|.+|++|.+.+  .++.+|+.+  .++|+.|++++|. +...       .+
T Consensus        48 ~~~~~~l~~L~Is~c~L-~s-----LP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-------P~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDI-ES-----LPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-------PE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCC-cc-----cCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-------cc
Confidence            44568889999988732 22     223454799999876  555677544  2688889988884 4322       14


Q ss_pred             CccEEEec
Q 039786          102 NLLEILLT  109 (210)
Q Consensus       102 ~L~~L~l~  109 (210)
                      +|+.|++.
T Consensus       113 sLe~L~L~  120 (426)
T PRK15386        113 SVRSLEIK  120 (426)
T ss_pred             ccceEEeC
Confidence            46666664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.06  E-value=2.9e-06  Score=72.66  Aligned_cols=129  Identities=14%  Similarity=0.071  Sum_probs=63.3

Q ss_pred             CCCceEEEEecCccccccccccc-CCccCceEEEeec-cCcc--CChhhhcCCCccEEEEEeecCCCcchhhhhcCCCcc
Q 039786           29 KNLESLTVEMTSKEEILDLLSLS-SPPQYLQRLYLTG-NMKK--LPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLL  104 (210)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~--~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  104 (210)
                      .+|++|+|++........+..+. .+| .|++|.+.| .+..  ...-...+|+|..||++++.++.  ...++.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LP-sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLP-SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--LSGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCc-ccceEEecCceecchhHHHHhhccCccceeecCCCCccC--cHHHhccccHH
Confidence            47777777663332222122222 234 677777766 3221  11223456777777777776655  35666677777


Q ss_pred             EEEecCccCCc-ceEecCCCCCcccEEEecccCcceee------EEccCCCCcccEEEeccCC
Q 039786          105 EILLTGTYDYE-LFHFEAGWFPKLQKLLLWDFIAVKSV------IIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus       105 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~------~~~~~~~~~L~~L~i~~~~  160 (210)
                      .|.+.+-.-.. .-....-.+.+|+.||+++-......      ......+|+|+.|+.++..
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            66664221000 00011223566777776643322211      0112246777777776554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.03  E-value=2.9e-06  Score=68.44  Aligned_cols=37  Identities=22%  Similarity=0.411  Sum_probs=25.5

Q ss_pred             cCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786          145 KGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       145 ~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~  183 (210)
                      .+.+++++.|++..|. ++.++. ++.+.+++.+++.+.
T Consensus       251 ~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         251 IGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             hccccccceecccccc-cccccc-ccccCccCEEeccCc
Confidence            3456667788877776 555554 667777888887764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=6.9e-07  Score=76.38  Aligned_cols=174  Identities=21%  Similarity=0.181  Sum_probs=102.6

Q ss_pred             CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccc-----------cc--cCCccCceEEEeec--cCc-c
Q 039786            5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLL-----------SL--SSPPQYLQRLYLTG--NMK-K   68 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----------~~--~~~~~~L~~L~l~~--~~~-~   68 (210)
                      ++.+.++.+ ..........+.+.. |+++.+.+..........           ..  ....++|++|+++|  .+. .
T Consensus        61 ~ltki~l~~-~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~  138 (699)
T KOG3665|consen   61 NLTKIDLKN-VTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG  138 (699)
T ss_pred             eeEEeeccc-eecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence            344444443 333444455566555 888888775543211110           00  01123799999998  333 2


Q ss_pred             CChhhh-cCCCccEEEEEeecCCCcchhhh-hcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceee-EEcc
Q 039786           69 LPDWIF-KLKNLIRLGLELSGLAEEPIRVL-QASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV-IIEK  145 (210)
Q Consensus        69 ~p~~~~-~l~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~  145 (210)
                      +|..++ .+|+|+.|.+.+-.+..+.+..+ .++|+|..|||+++.... + .+...+++|+.|.+.+...-..- -...
T Consensus       139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~L  216 (699)
T KOG3665|consen  139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDL  216 (699)
T ss_pred             HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence            555555 56999999999877555544444 489999999998554332 1 35556778888877665422100 0112


Q ss_pred             CCCCcccEEEeccCCCCCcccccc-------cccccccceeeecc
Q 039786          146 GAVPDIRELRIGPCPLLMEIPIGI-------EHLKNLKLLKFAGM  183 (210)
Q Consensus       146 ~~~~~L~~L~i~~~~~l~~lp~~l-------~~l~~L~~l~l~~~  183 (210)
                      -.+.+|+.|||+.-..... +..+       ..+|+|+.|+.++.
T Consensus       217 F~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  217 FNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             hcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCc
Confidence            3589999999997663321 1111       24788888888774

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.85  E-value=2.9e-06  Score=66.89  Aligned_cols=183  Identities=18%  Similarity=0.167  Sum_probs=110.4

Q ss_pred             CCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEecCccc--------------------------ccccccccCCcc
Q 039786            3 LRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMTSKEE--------------------------ILDLLSLSSPPQ   55 (210)
Q Consensus         3 L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------------------------~~~~~~~~~~~~   55 (210)
                      .++|++|+++| .......+.....+..+++.+...+|...+                          +.++..++....
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            57889999998 333334444445555566666555554322                          111111111122


Q ss_pred             CceEEEeec--cCccCC--hhhhcCCCccEEEEEeec-CCCcchhhhh-cCCCccEEEecCccCC--cceEecCCCCCcc
Q 039786           56 YLQRLYLTG--NMKKLP--DWIFKLKNLIRLGLELSG-LAEEPIRVLQ-ASPNLLEILLTGTYDY--ELFHFEAGWFPKL  127 (210)
Q Consensus        56 ~L~~L~l~~--~~~~~p--~~~~~l~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L  127 (210)
                      .|+.|...+  .++..+  .-....++|+.|.+..|. +++..+..++ +.+.|+.+++..|..+  .++......++.|
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            566666555  222211  112466889999999887 6666666666 6788888888744322  2233445678899


Q ss_pred             cEEEecccCcceee-----EEccCCCCcccEEEeccCCCCC-cccccccccccccceeeecchH
Q 039786          128 QKLLLWDFIAVKSV-----IIEKGAVPDIRELRIGPCPLLM-EIPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       128 ~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~i~~~~~l~-~lp~~l~~l~~L~~l~l~~~~~  185 (210)
                      +.+.++.|..+..-     .....++..|+.+.+.+|+.+. ..-..+..+++|+.+++.+|..
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            99988877654432     1222357789999999998543 2333456778999999999865

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1.8e-05  Score=42.83  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=23.7

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCC
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAE   91 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~   91 (210)
                      +|++|++.+ .++.+|..++.+++|+.|++++|.+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            577777776 666676556777777777777776654

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.76  E-value=3.9e-07  Score=74.31  Aligned_cols=160  Identities=17%  Similarity=0.200  Sum_probs=107.5

Q ss_pred             CCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcch
Q 039786           16 GNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPI   94 (210)
Q Consensus        16 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~   94 (210)
                      .....++..+..+..|+.+.++.|.....  ...++.+. .|.+++|+. .++.+|..+..+ -|+.|-+++|+++..+ 
T Consensus        85 NR~~elp~~~~~f~~Le~liLy~n~~r~i--p~~i~~L~-~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp-  159 (722)
T KOG0532|consen   85 NRFSELPEEACAFVSLESLILYHNCIRTI--PEAICNLE-ALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLP-  159 (722)
T ss_pred             cccccCchHHHHHHHHHHHHHHhccceec--chhhhhhh-HHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCC-
Confidence            34445555566666666666665332222  23345554 677778876 677788777776 5888888888876654 


Q ss_pred             hhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCccccccccccc
Q 039786           95 RVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKN  174 (210)
Q Consensus        95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~  174 (210)
                      ..++..+.|..|+.+.+ ....++.....+.+|+.|.+.... +..++.+.. --.|..|++++|. +..+|-.+.++..
T Consensus       160 ~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScNk-is~iPv~fr~m~~  235 (722)
T KOG0532|consen  160 EEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCNK-ISYLPVDFRKMRH  235 (722)
T ss_pred             cccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccCc-eeecchhhhhhhh
Confidence            44567788888877633 233455555667788888777543 444555444 3457888988666 8899999999999


Q ss_pred             ccceeeecch
Q 039786          175 LKLLKFAGMV  184 (210)
Q Consensus       175 L~~l~l~~~~  184 (210)
                      |++|.+.++|
T Consensus       236 Lq~l~LenNP  245 (722)
T KOG0532|consen  236 LQVLQLENNP  245 (722)
T ss_pred             heeeeeccCC
Confidence            9999999976

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.73  E-value=1.6e-06  Score=68.21  Aligned_cols=183  Identities=18%  Similarity=0.201  Sum_probs=103.0

Q ss_pred             CCCCcEEEEEecCCCcchHHH-HhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccC---------------
Q 039786            3 LRQLRKLSIRPQNGNGKDLCG-LIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNM---------------   66 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------   66 (210)
                      .++|+.|++..+...+..... ....+++|+++.+++|..+....+..+..=...++.+.+.|+.               
T Consensus       189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~  268 (483)
T KOG4341|consen  189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL  268 (483)
T ss_pred             cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence            467788887642223333334 3446799999999999876553333222111123333333211               


Q ss_pred             -------------ccCChh--hhcCCCccEEEEEeec-CCCcchhhhh-cCCCccEEEecCccCCcce--EecCCCCCcc
Q 039786           67 -------------KKLPDW--IFKLKNLIRLGLELSG-LAEEPIRVLQ-ASPNLLEILLTGTYDYELF--HFEAGWFPKL  127 (210)
Q Consensus        67 -------------~~~p~~--~~~l~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L  127 (210)
                                   +....|  -..+..|++|+.++|. ++......++ +.++|+.+.+..|..-...  ..-..+++.|
T Consensus       269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L  348 (483)
T KOG4341|consen  269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL  348 (483)
T ss_pred             HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence                         110001  1235677777777776 5555555555 5677777777755422211  1123456778


Q ss_pred             cEEEecccCcceee--EEccCCCCcccEEEeccCCCCCcc-----cccccccccccceeeecchH
Q 039786          128 QKLLLWDFIAVKSV--IIEKGAVPDIRELRIGPCPLLMEI-----PIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       128 ~~L~l~~~~~l~~~--~~~~~~~~~L~~L~i~~~~~l~~l-----p~~l~~l~~L~~l~l~~~~~  185 (210)
                      +.+++.+|......  ......++.|+.+.++.|...++-     ..+-..+..|..+++.+||.
T Consensus       349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~  413 (483)
T KOG4341|consen  349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL  413 (483)
T ss_pred             hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence            88877776543322  111235788999999988755432     22224556788999999875

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.72  E-value=2.4e-05  Score=63.20  Aligned_cols=150  Identities=25%  Similarity=0.311  Sum_probs=87.9

Q ss_pred             CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEE
Q 039786            5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLG   83 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~   83 (210)
                      +|+.|+++.  .....++..++.+++|+.|+++.|........  ....+ .|+.|.+++ .+..+|..++....|+.|.
T Consensus       141 nL~~L~l~~--N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~--~~~~~-~L~~L~ls~N~i~~l~~~~~~~~~L~~l~  215 (394)
T COG4886         141 NLKELDLSD--NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL--LSNLS-NLNNLDLSGNKISDLPPEIELLSALEELD  215 (394)
T ss_pred             hcccccccc--cchhhhhhhhhccccccccccCCchhhhhhhh--hhhhh-hhhheeccCCccccCchhhhhhhhhhhhh
Confidence            566677664  33344445567777777777776544322111  11233 677777777 6677776555666677777


Q ss_pred             EEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCC
Q 039786           84 LELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLM  163 (210)
Q Consensus        84 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~  163 (210)
                      +.+|.+.. .+..+..++++..+.+.+.. ...+.......++++.|++.++. +..+.. .+...+++.+++.++....
T Consensus       216 ~~~N~~~~-~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         216 LSNNSIIE-LLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             hcCCccee-cchhhhhcccccccccCCce-eeeccchhccccccceecccccc-cccccc-ccccCccCEEeccCccccc
Confidence            77774211 13455566666666543221 11112334556778888887654 444443 5678899999999876433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.70  E-value=8.3e-06  Score=62.91  Aligned_cols=182  Identities=21%  Similarity=0.209  Sum_probs=102.0

Q ss_pred             CCCCcEEEEEe--cCCCcchH-------HHHhhcCCCCceEEEEecCccccc--ccccc-cCCccCceEEEeec-cCccC
Q 039786            3 LRQLRKLSIRP--QNGNGKDL-------CGLIANLKNLESLTVEMTSKEEIL--DLLSL-SSPPQYLQRLYLTG-NMKKL   69 (210)
Q Consensus         3 L~~L~~L~l~~--~~~~~~~~-------~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~-~~~~~~L~~L~l~~-~~~~~   69 (210)
                      .++||+.++++  .......+       .+++...+.|+.++++.|...+..  .+..+ .+.. .|++|.+.+ .+...
T Consensus        57 ~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~-~L~eL~L~N~Glg~~  135 (382)
T KOG1909|consen   57 KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCT-DLEELYLNNCGLGPE  135 (382)
T ss_pred             cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhcc-CHHHHhhhcCCCChh
Confidence            34666666665  22222222       233444568888888876543221  12222 2233 688888876 33211


Q ss_pred             -----C---------hhhhcCCCccEEEEEeecCCCcchhh----hhcCCCccEEEec-CccCCcceEe---cCCCCCcc
Q 039786           70 -----P---------DWIFKLKNLIRLGLELSGLAEEPIRV----LQASPNLLEILLT-GTYDYELFHF---EAGWFPKL  127 (210)
Q Consensus        70 -----p---------~~~~~l~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~-~~~~~~~~~~---~~~~~~~L  127 (210)
                           .         .-+..-+.|+++....|.+.+.+...    +...+.|+.+.+. +....+.+..   ....+|+|
T Consensus       136 ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~L  215 (382)
T KOG1909|consen  136 AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHL  215 (382)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcc
Confidence                 1         11234567888888888766655332    3456788888887 4333332211   23456889


Q ss_pred             cEEEecccCccee----eEEccCCCCcccEEEeccCCCCCcccc----cc-cccccccceeeecchH
Q 039786          128 QKLLLWDFIAVKS----VIIEKGAVPDIRELRIGPCPLLMEIPI----GI-EHLKNLKLLKFAGMVK  185 (210)
Q Consensus       128 ~~L~l~~~~~l~~----~~~~~~~~~~L~~L~i~~~~~l~~lp~----~l-~~l~~L~~l~l~~~~~  185 (210)
                      +.|++.++.....    +......|++|+.|.+++|..-.....    .+ ...++|+.+.+.+|..
T Consensus       216 evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  216 EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             eeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            9999887653221    111234688899999999973322222    22 2468899999888764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.53  E-value=8e-06  Score=66.42  Aligned_cols=31  Identities=35%  Similarity=0.597  Sum_probs=17.2

Q ss_pred             ccEEEeccCCCCCcccccccccccccceeeec
Q 039786          151 IRELRIGPCPLLMEIPIGIEHLKNLKLLKFAG  182 (210)
Q Consensus       151 L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~  182 (210)
                      |+.+++..++ +...+.++..+..++.+++.+
T Consensus       234 L~~l~l~~n~-i~~~~~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  234 LRELYLSGNR-ISRSPEGLENLKNLPVLDLSS  264 (414)
T ss_pred             HHHHhcccCc-cccccccccccccccccchhh
Confidence            5666666666 333334455555555555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.49  E-value=0.00012  Score=39.59  Aligned_cols=35  Identities=20%  Similarity=0.419  Sum_probs=23.6

Q ss_pred             CcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          149 PDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       149 ~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ++|++|++.+|. ++.+|..++.+++|+.|++++++
T Consensus         1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence            457777777776 66677667777777777777764

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.34  E-value=0.00029  Score=56.55  Aligned_cols=66  Identities=17%  Similarity=0.246  Sum_probs=39.1

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeec-CCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSG-LAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW  133 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  133 (210)
                      ++++|++++ .++.+|.   -..+|+.|.+++|. ++..+ ..+  .++|++|.++.|.....++      ++|+.|.+.
T Consensus        53 ~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~  120 (426)
T PRK15386         53 ASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIK  120 (426)
T ss_pred             CCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccccc------cccceEEeC
Confidence            788888887 6777772   23468888888875 43322 222  2578888887553322221      345666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.31  E-value=6.7e-06  Score=69.27  Aligned_cols=106  Identities=18%  Similarity=0.127  Sum_probs=72.0

Q ss_pred             hhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcc
Q 039786           73 IFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDI  151 (210)
Q Consensus        73 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L  151 (210)
                      +..++.|+.|+|+.|+++.  ...+..++.|+.|+|+ ||... .......++. |+.|.+.++. ++.+. ....+.+|
T Consensus       183 Lqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~-l~tL~-gie~LksL  256 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNA-LTTLR-GIENLKSL  256 (1096)
T ss_pred             HHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhcc-ccccchhhhh-heeeeecccH-HHhhh-hHHhhhhh
Confidence            3457889999999998766  4488899999999998 66422 1223344554 8888888654 33221 23467889


Q ss_pred             cEEEeccCCCC--CcccccccccccccceeeecchH
Q 039786          152 RELRIGPCPLL--MEIPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       152 ~~L~i~~~~~l--~~lp~~l~~l~~L~~l~l~~~~~  185 (210)
                      +.|++++|-..  +++ .-+..+..|+.|++.++|.
T Consensus       257 ~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCcc
Confidence            99999887621  222 1235778899999999775

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.00013  Score=55.69  Aligned_cols=174  Identities=21%  Similarity=0.213  Sum_probs=93.2

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHh-hcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc--C-ChhhhcC
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLI-ANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK--L-PDWIFKL   76 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~--~-p~~~~~l   76 (210)
                      +||.|+.|+++. +.....+ ..+ ..+.+|++|.+.+...........+..+| .+++|+++. ....  + ...+...
T Consensus        95 ~lP~l~~LNls~-N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP-~vtelHmS~N~~rq~n~Dd~c~e~~  171 (418)
T KOG2982|consen   95 QLPALTTLNLSC-NSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP-KVTELHMSDNSLRQLNLDDNCIEDW  171 (418)
T ss_pred             cCccceEeeccC-CcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcch-hhhhhhhccchhhhhcccccccccc
Confidence            689999999995 2222222 222 45679999999875332211112233445 677776654 2221  1 1122222


Q ss_pred             -CCccEEEEEeecCCCc-chhhh-hcCCCccEEEecCc-cCCcceEecCCCCCcccEEEecccCcceeeE--EccCCCCc
Q 039786           77 -KNLIRLGLELSGLAEE-PIRVL-QASPNLLEILLTGT-YDYELFHFEAGWFPKLQKLLLWDFIAVKSVI--IEKGAVPD  150 (210)
Q Consensus        77 -~~L~~L~l~~~~l~~~-~~~~l-~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~  150 (210)
                       +.+++|++..|..... ..-.+ .-+|++..+-+..+ .......-+.+.||.+..|+++.. .+.+|.  .+...|++
T Consensus       172 s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~  250 (418)
T KOG2982|consen  172 STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQ  250 (418)
T ss_pred             chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCch
Confidence             3666777777642111 11122 25788888877633 222222233456777777776643 344442  23457899


Q ss_pred             ccEEEeccCCCCCccccc------cccccccccee
Q 039786          151 IRELRIGPCPLLMEIPIG------IEHLKNLKLLK  179 (210)
Q Consensus       151 L~~L~i~~~~~l~~lp~~------l~~l~~L~~l~  179 (210)
                      |..|.+..+|....+-.+      ++.+++++.|+
T Consensus       251 l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  251 LVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             hheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            999999998854433222      24455555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.16  E-value=7.3e-06  Score=69.07  Aligned_cols=108  Identities=19%  Similarity=0.130  Sum_probs=70.9

Q ss_pred             HHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh-hhcCCCccEEEEEeecCCCcchhhhhc
Q 039786           22 CGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNLIRLGLELSGLAEEPIRVLQA   99 (210)
Q Consensus        22 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-~~~l~~L~~L~l~~~~l~~~~~~~l~~   99 (210)
                      -.++.-++.|++|++++|....   .+.+.-++ +|++|+|+. ++..+|.. +..+ +|+.|.+++|.++.  +..+.+
T Consensus       180 D~SLqll~ale~LnLshNk~~~---v~~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t--L~gie~  252 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTK---VDNLRRLP-KLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT--LRGIEN  252 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhh---hHHHHhcc-cccccccccchhccccccchhhh-hheeeeecccHHHh--hhhHHh
Confidence            3455666888999998864433   23455566 899999987 77777752 2233 48999999988765  567788


Q ss_pred             CCCccEEEec-CccCCcceEecCCCCCcccEEEecccC
Q 039786          100 SPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFI  136 (210)
Q Consensus       100 l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~  136 (210)
                      +.+|+.|+++ |+...-.-......+..|+.|.+.+++
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            8999999998 654332111112234566667766654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.15  E-value=0.00098  Score=48.06  Aligned_cols=103  Identities=18%  Similarity=0.194  Sum_probs=64.0

Q ss_pred             CCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhh-cCCCccEEEEEeecCCC-cchhhhhcCCCccEE
Q 039786           30 NLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIF-KLKNLIRLGLELSGLAE-EPIRVLQASPNLLEI  106 (210)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~-~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L  106 (210)
                      +...+++..++....   ..+..++ .|..|.++. .++.+...+. .+++|+.|.+++|.+.. .++..+..+|.|++|
T Consensus        43 ~~d~iDLtdNdl~~l---~~lp~l~-rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL---DNLPHLP-RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhhc---ccCCCcc-ccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            445566666544333   3355555 788888887 7777654444 55789999999988655 345667788888888


Q ss_pred             EecCccCCcce---EecCCCCCcccEEEecccC
Q 039786          107 LLTGTYDYELF---HFEAGWFPKLQKLLLWDFI  136 (210)
Q Consensus       107 ~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~  136 (210)
                      .+-.......-   ......+|+|++|++.+..
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            77522111111   1223457888888876543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.08  E-value=4.1e-05  Score=63.12  Aligned_cols=113  Identities=24%  Similarity=0.217  Sum_probs=65.2

Q ss_pred             hhcCCCCceEEEEecCcccccccccc-cCCccCceEEEeec-c--CccCC----hhhhcCCCccEEEEEeec-CCCcchh
Q 039786           25 IANLKNLESLTVEMTSKEEILDLLSL-SSPPQYLQRLYLTG-N--MKKLP----DWIFKLKNLIRLGLELSG-LAEEPIR   95 (210)
Q Consensus        25 l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~-~--~~~~p----~~~~~l~~L~~L~l~~~~-l~~~~~~   95 (210)
                      ....++|+.+.+..+.......+..+ ...+ +|+.|++++ +  ....+    .....+++|+.|++..+. +++..+.
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCP-NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCc-hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            33457777777777655544332222 2233 777777764 1  11111    122345777788888777 6666666


Q ss_pred             hhhc-CCCccEEEecCccC--CcceEecCCCCCcccEEEecccCcc
Q 039786           96 VLQA-SPNLLEILLTGTYD--YELFHFEAGWFPKLQKLLLWDFIAV  138 (210)
Q Consensus        96 ~l~~-l~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l  138 (210)
                      .++. +++|+.|.+.+|..  ...+......++.|+.|++..|..+
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            6654 67788777655542  2223333455677788877777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.01  E-value=5.5e-05  Score=62.34  Aligned_cols=131  Identities=25%  Similarity=0.248  Sum_probs=79.8

Q ss_pred             CCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEec-Ccccccc---cccccCCccCceEEEeec-c-Ccc--CChhh
Q 039786            3 LRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMT-SKEEILD---LLSLSSPPQYLQRLYLTG-N-MKK--LPDWI   73 (210)
Q Consensus         3 L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~---~~~~~~~~~~L~~L~l~~-~-~~~--~p~~~   73 (210)
                      .++|+.|.+.. .......+.......++|+.|+++++ .......   ........ +|+.+++.. . ++.  +....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICR-KLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcC-CcCccchhhhhccCchhHHHHH
Confidence            46788888876 22233335667778899999999873 2221111   11112233 789999887 3 443  22222


Q ss_pred             hcCCCccEEEEEeec-CCCcchhhhh-cCCCccEEEecCccCC--cceEecCCCCCcccEEEecc
Q 039786           74 FKLKNLIRLGLELSG-LAEEPIRVLQ-ASPNLLEILLTGTYDY--ELFHFEAGWFPKLQKLLLWD  134 (210)
Q Consensus        74 ~~l~~L~~L~l~~~~-l~~~~~~~l~-~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~  134 (210)
                      ..+++|+.|.+..|. +++..+..++ .+++|+.|+++.|...  ..+......+++++.+.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            348899999988888 7887776665 6899999999855432  11111123366666655443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.65  E-value=0.002  Score=46.57  Aligned_cols=84  Identities=23%  Similarity=0.225  Sum_probs=55.1

Q ss_pred             HHhhcCCCCceEEEEecCccccccccccc-CCccCceEEEeec-cCccCCh--hhhcCCCccEEEEEeecCCCcc---hh
Q 039786           23 GLIANLKNLESLTVEMTSKEEILDLLSLS-SPPQYLQRLYLTG-NMKKLPD--WIFKLKNLIRLGLELSGLAEEP---IR   95 (210)
Q Consensus        23 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~~p~--~~~~l~~L~~L~l~~~~l~~~~---~~   95 (210)
                      +-+..+..|.+|.+.+|.. ..++.. +. ..+ +|+.|.+.+ .+.++-+  ....+|.|++|.+-+|.+....   ..
T Consensus        58 ~~lp~l~rL~tLll~nNrI-t~I~p~-L~~~~p-~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y  134 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRI-TRIDPD-LDTFLP-NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY  134 (233)
T ss_pred             ccCCCccccceEEecCCcc-eeeccc-hhhhcc-ccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE
Confidence            3356677888888887543 333222 22 234 788999887 5554322  4567789999999888765532   23


Q ss_pred             hhhcCCCccEEEec
Q 039786           96 VLQASPNLLEILLT  109 (210)
Q Consensus        96 ~l~~l~~L~~L~l~  109 (210)
                      .+..+|+|+.|+..
T Consensus       135 vl~klp~l~~LDF~  148 (233)
T KOG1644|consen  135 VLYKLPSLRTLDFQ  148 (233)
T ss_pred             EEEecCcceEeehh
Confidence            45688999999876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.62  E-value=0.0067  Score=46.02  Aligned_cols=181  Identities=17%  Similarity=0.122  Sum_probs=106.9

Q ss_pred             CCCCCcEEEEEe---cCCCcchHHHHhhcCCCCceEEEEecCcccccc--c----------ccccCCccCceEEEeec-c
Q 039786            2 KLRQLRKLSIRP---QNGNGKDLCGLIANLKNLESLTVEMTSKEEILD--L----------LSLSSPPQYLQRLYLTG-N   65 (210)
Q Consensus         2 ~L~~L~~L~l~~---~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~----------~~~~~~~~~L~~L~l~~-~   65 (210)
                      ++|+|++.++|.   .......+-+.+++.++|.||.+++|...+...  +          ...+.-| .|+...... .
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp-~Le~vicgrNR  168 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKP-KLEVVICGRNR  168 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCC-CceEEEeccch
Confidence            468899999997   222344445667778999999999887643221  0          1122334 688876654 5


Q ss_pred             CccCCh-----hhhcCCCccEEEEEeecCCCcchh-----hhhcCCCccEEEec-CccCCc---ceEecCCCCCcccEEE
Q 039786           66 MKKLPD-----WIFKLKNLIRLGLELSGLAEEPIR-----VLQASPNLLEILLT-GTYDYE---LFHFEAGWFPKLQKLL  131 (210)
Q Consensus        66 ~~~~p~-----~~~~l~~L~~L~l~~~~l~~~~~~-----~l~~l~~L~~L~l~-~~~~~~---~~~~~~~~~~~L~~L~  131 (210)
                      +...|.     .+..-.+|+.+.+..|.|+.....     .+....+|+.|+|. |.+...   .+.......+.|+.|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            555443     223336899999999998776433     23357899999997 443211   1111122346678888


Q ss_pred             ecccCcceee------EEccCCCCcccEEEeccCCCCC-c-----ccccc-cccccccceeeecc
Q 039786          132 LWDFIAVKSV------IIEKGAVPDIRELRIGPCPLLM-E-----IPIGI-EHLKNLKLLKFAGM  183 (210)
Q Consensus       132 l~~~~~l~~~------~~~~~~~~~L~~L~i~~~~~l~-~-----lp~~l-~~l~~L~~l~l~~~  183 (210)
                      +.+|--...-      .+....+|+|..|...+|.+-. .     +|.-. ..+|-|..+...++
T Consensus       249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN  313 (388)
T COG5238         249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN  313 (388)
T ss_pred             ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence            8887421110      1222346888888888876311 1     22111 35666777766654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.25  E-value=0.0021  Score=48.00  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=16.1

Q ss_pred             cCCCccEEEEEee--cCCCcchhhhhcCCCccEEEec
Q 039786           75 KLKNLIRLGLELS--GLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        75 ~l~~L~~L~l~~~--~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      .+++|++|.++.|  +++..-......+|+|+++.++
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls   99 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLS   99 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeec
Confidence            3456666666665  2222211122233556665555

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.00013  Score=55.12  Aligned_cols=99  Identities=20%  Similarity=0.179  Sum_probs=62.6

Q ss_pred             CCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCc-chhhhhcCCCccE
Q 039786           28 LKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEE-PIRVLQASPNLLE  105 (210)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~  105 (210)
                      +.+.+.|++++|....   +.....++ .|+.|.|+- +++.+. .+..+++|+.|+|+.|.|.+. .+.++.++|+|+.
T Consensus        18 l~~vkKLNcwg~~L~D---Isic~kMp-~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD---ISICEKMP-LLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccH---HHHHHhcc-cceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            4566677777764422   23345566 788888876 666664 567788888888888877664 3567778888888


Q ss_pred             EEec-CccCCcceE----ecCCCCCcccEEE
Q 039786          106 ILLT-GTYDYELFH----FEAGWFPKLQKLL  131 (210)
Q Consensus       106 L~l~-~~~~~~~~~----~~~~~~~~L~~L~  131 (210)
                      |.|. |...+..-.    .....+|+|++|+
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8887 333221100    0123467777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.17  E-value=0.00059  Score=55.61  Aligned_cols=8  Identities=38%  Similarity=0.335  Sum_probs=2.8

Q ss_pred             ccEEEEEe
Q 039786           79 LIRLGLEL   86 (210)
Q Consensus        79 L~~L~l~~   86 (210)
                      |+.+++.+
T Consensus       164 L~~l~l~~  171 (414)
T KOG0531|consen  164 LKLLDLSY  171 (414)
T ss_pred             hhcccCCc
Confidence            33333333

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.00014  Score=54.91  Aligned_cols=102  Identities=23%  Similarity=0.255  Sum_probs=46.9

Q ss_pred             CCCccEEEEEeecCCCcchhhhhcCCCccEEEec-CccCCcceEecCCCCCcccEEEecccCcceee--EEccCCCCccc
Q 039786           76 LKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV--IIEKGAVPDIR  152 (210)
Q Consensus        76 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~  152 (210)
                      +.+.+.|+.++|.+++  +.....||.|+.|.|+ |....  + .....|++|++|-+..+. +.++  .+....+|+|+
T Consensus        18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIss--L-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISS--L-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccH--HHHHHhcccceeEEeecccccc--c-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence            3445555555555433  3333455666665555 22110  0 122234455554443221 1110  01123467777


Q ss_pred             EEEeccCCCCCccccc-----ccccccccceeeecc
Q 039786          153 ELRIGPCPLLMEIPIG-----IEHLKNLKLLKFAGM  183 (210)
Q Consensus       153 ~L~i~~~~~l~~lp~~-----l~~l~~L~~l~l~~~  183 (210)
                      .|++..|+.-..-+..     +..+|+|++|+=...
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V  127 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV  127 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence            7777777654433322     245677776665443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.60  E-value=0.0015  Score=44.34  Aligned_cols=79  Identities=18%  Similarity=0.241  Sum_probs=43.9

Q ss_pred             hcCCCCceEEEEecCccccccccccc-CCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCc
Q 039786           26 ANLKNLESLTVEMTSKEEILDLLSLS-SPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNL  103 (210)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  103 (210)
                      ....+|...++++|......+  .+. .++ ..+.|++.. .++++|..+..++.|+.|+++.|.+..++ ..+..+.++
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~--kft~kf~-t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p-~vi~~L~~l  125 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPK--KFTIKFP-TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEP-RVIAPLIKL  125 (177)
T ss_pred             hCCceEEEEecccchhhhCCH--HHhhccc-hhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccch-HHHHHHHhH
Confidence            334455556666644332211  222 222 566667766 66677777777777777777777765543 333336666


Q ss_pred             cEEEe
Q 039786          104 LEILL  108 (210)
Q Consensus       104 ~~L~l  108 (210)
                      .+|+.
T Consensus       126 ~~Lds  130 (177)
T KOG4579|consen  126 DMLDS  130 (177)
T ss_pred             HHhcC
Confidence            66554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.48  E-value=0.0066  Score=45.44  Aligned_cols=81  Identities=25%  Similarity=0.236  Sum_probs=47.7

Q ss_pred             CCCCceEEEEecCcccccccccccCCccCceEEEeec---cCc-cCChhhhcCCCccEEEEEeecCCC-cchhhhhcCCC
Q 039786           28 LKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG---NMK-KLPDWIFKLKNLIRLGLELSGLAE-EPIRVLQASPN  102 (210)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~-~~p~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~  102 (210)
                      +.+|+.|++.++....   +..+..++ +|+.|.++.   .+. .++.....+++|+++++++|++.. ..+..+..+++
T Consensus        42 ~~~le~ls~~n~gltt---~~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT---LTNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccchhhhhhhccceee---cccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            3556666655533322   34455566 788888765   222 244344555888888888887764 22344556677


Q ss_pred             ccEEEecCcc
Q 039786          103 LLEILLTGTY  112 (210)
Q Consensus       103 L~~L~l~~~~  112 (210)
                      |..|++.+|.
T Consensus       118 L~~Ldl~n~~  127 (260)
T KOG2739|consen  118 LKSLDLFNCS  127 (260)
T ss_pred             hhhhhcccCC
Confidence            7777776554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.02  E-value=0.013  Score=26.32  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=15.0

Q ss_pred             cccEEEeccCCCCCcccccccc
Q 039786          150 DIRELRIGPCPLLMEIPIGIEH  171 (210)
Q Consensus       150 ~L~~L~i~~~~~l~~lp~~l~~  171 (210)
                      +|++|++++|. ++.+|.++++
T Consensus         1 ~L~~Ldls~n~-l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNN-LTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSE-ESEEGTTTTT
T ss_pred             CccEEECCCCc-CEeCChhhcC
Confidence            47888888884 6677776543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.76  E-value=0.011  Score=44.98  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=19.6

Q ss_pred             cCCCccEEEEEeecCCCcchh----hhhcCCCccEEEecCc
Q 039786           75 KLKNLIRLGLELSGLAEEPIR----VLQASPNLLEILLTGT  111 (210)
Q Consensus        75 ~l~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~  111 (210)
                      .||+|+..+++.|.+....+.    .++.-+.|++|.+.|+
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence            456666666666654433222    2334566666666544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.49  E-value=0.033  Score=23.25  Aligned_cols=17  Identities=29%  Similarity=0.677  Sum_probs=8.4

Q ss_pred             CcccEEEeccCCCCCccc
Q 039786          149 PDIRELRIGPCPLLMEIP  166 (210)
Q Consensus       149 ~~L~~L~i~~~~~l~~lp  166 (210)
                      ++|+.|++++|. ++.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            356777777776 55544

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.45  E-value=0.11  Score=34.62  Aligned_cols=82  Identities=20%  Similarity=0.167  Sum_probs=42.3

Q ss_pred             HhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCC
Q 039786           24 LIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPN  102 (210)
Q Consensus        24 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  102 (210)
                      .+.+.++|+.+.+..  .....+-..+.... +|+.+.+.+.+..++. .+..+++|+.+.+.. .+...+...+..+++
T Consensus         7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~-~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN--TIKKIGENAFSNCT-SLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS--T--EE-TTTTTT-T-T-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC--CeeEeChhhccccc-ccccccccccccccceeeeecccccccccccc-ccccccccccccccc
Confidence            345666777777753  23334444555555 6888887765555544 345566788888855 344444456667788


Q ss_pred             ccEEEec
Q 039786          103 LLEILLT  109 (210)
Q Consensus       103 L~~L~l~  109 (210)
                      |+.+.+.
T Consensus        83 l~~i~~~   89 (129)
T PF13306_consen   83 LKNIDIP   89 (129)
T ss_dssp             ECEEEET
T ss_pred             ccccccC
Confidence            8888774

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.37  E-value=0.003  Score=45.55  Aligned_cols=39  Identities=23%  Similarity=0.443  Sum_probs=24.5

Q ss_pred             CCCcccEEEeccCCCCCccc-ccccccccccceeeecchH
Q 039786          147 AVPDIRELRIGPCPLLMEIP-IGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       147 ~~~~L~~L~i~~~~~l~~lp-~~l~~l~~L~~l~l~~~~~  185 (210)
                      ..++|+.|+|++|+.+++-. ..+..+++|+.+.+.+.+.
T Consensus       149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence            35677777777777665321 1235667777777777553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.17  E-value=0.0083  Score=43.37  Aligned_cols=61  Identities=20%  Similarity=0.152  Sum_probs=37.8

Q ss_pred             cccccCCccCceEEEeec--cCcc--CChhh-hcCCCccEEEEEeec-CCCcchhhhhcCCCccEEEec
Q 039786           47 LLSLSSPPQYLQRLYLTG--NMKK--LPDWI-FKLKNLIRLGLELSG-LAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        47 ~~~~~~~~~~L~~L~l~~--~~~~--~p~~~-~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      ++.+..+. .++.|.+.+  ++..  +. .+ +-.++|+.|+|++|. |++..+..+..+++|+.|.+.
T Consensus       118 le~L~~l~-~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  118 LEHLRDLR-SIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             HHHHhccc-hhhhheeccccchhhHHHH-HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            34444444 555666554  2221  11 11 234788888888887 888777788888888887775

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.80  E-value=0.021  Score=26.12  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=14.0

Q ss_pred             CCCccEEEEEeecCCCcchhhhh
Q 039786           76 LKNLIRLGLELSGLAEEPIRVLQ   98 (210)
Q Consensus        76 l~~L~~L~l~~~~l~~~~~~~l~   98 (210)
                      +++|+.|+|++|.++...+.+++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            36788888888887666555543

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=92.20  E-value=0.017  Score=39.44  Aligned_cols=99  Identities=19%  Similarity=0.172  Sum_probs=67.9

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhh-cCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIA-NLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      ..+|+..++++  .....+++.+. .++.++.|++.++ ...+.+.+ ++.++ .|+.|+++. .+...|..+..+.++.
T Consensus        52 ~~el~~i~ls~--N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~-aLr~lNl~~N~l~~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   52 GYELTKISLSD--NGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMP-ALRSLNLRFNPLNAEPRVIAPLIKLD  126 (177)
T ss_pred             CceEEEEeccc--chhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhH-HhhhcccccCccccchHHHHHHHhHH
Confidence            34677778875  44555665554 4568899999884 44444444 78888 899999998 7777888888899999


Q ss_pred             EEEEEeecCCCcchhhh-hcCCCccEE
Q 039786           81 RLGLELSGLAEEPIRVL-QASPNLLEI  106 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l-~~l~~L~~L  106 (210)
                      .|+..++.+...+...+ +..+.+..+
T Consensus       127 ~Lds~~na~~eid~dl~~s~~~al~~l  153 (177)
T KOG4579|consen  127 MLDSPENARAEIDVDLFYSSLPALIKL  153 (177)
T ss_pred             HhcCCCCccccCcHHHhccccHHHHHh
Confidence            99998887555444322 234444443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=91.58  E-value=0.078  Score=24.75  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=16.4

Q ss_pred             CCCccEEEEEeec-CCCcchhhhh
Q 039786           76 LKNLIRLGLELSG-LAEEPIRVLQ   98 (210)
Q Consensus        76 l~~L~~L~l~~~~-l~~~~~~~l~   98 (210)
                      +++|++|+|++|. +++..+..++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            4678888888887 7776655544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.02  E-value=0.62  Score=30.88  Aligned_cols=102  Identities=10%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             ccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcc
Q 039786           50 LSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKL  127 (210)
Q Consensus        50 ~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L  127 (210)
                      +.... +|+.+.+...+..++. .+..+++|+.+.+..+ +...+...+...++++.+.+.+.  ...+.. ....++++
T Consensus         8 F~~~~-~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCS-NLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-T-T--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTE
T ss_pred             HhCCC-CCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccc
Confidence            44444 6777777655555443 4566678888888764 55555566777777888887531  111111 12335677


Q ss_pred             cEEEecccCcceeeEEc-cCCCCcccEEEecc
Q 039786          128 QKLLLWDFIAVKSVIIE-KGAVPDIRELRIGP  158 (210)
Q Consensus       128 ~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~  158 (210)
                      +.+.+..  .+..+... .... .|+.+.+..
T Consensus        84 ~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPS--NITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCc--cccEEchhhhcCC-CceEEEECC
Confidence            7777643  22322211 1122 566666553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.04  E-value=0.21  Score=23.18  Aligned_cols=20  Identities=35%  Similarity=0.350  Sum_probs=11.8

Q ss_pred             CCCccEEEEEeecCCCcchh
Q 039786           76 LKNLIRLGLELSGLAEEPIR   95 (210)
Q Consensus        76 l~~L~~L~l~~~~l~~~~~~   95 (210)
                      +++|++|++.+|.++..+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35666677766666554433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.04  E-value=0.21  Score=23.18  Aligned_cols=20  Identities=35%  Similarity=0.350  Sum_probs=11.8

Q ss_pred             CCCccEEEEEeecCCCcchh
Q 039786           76 LKNLIRLGLELSGLAEEPIR   95 (210)
Q Consensus        76 l~~L~~L~l~~~~l~~~~~~   95 (210)
                      +++|++|++.+|.++..+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35666677766666554433

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.18  E-value=0.82  Score=21.68  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=15.5

Q ss_pred             CCccEEEEEeecCCCcchhhhh
Q 039786           77 KNLIRLGLELSGLAEEPIRVLQ   98 (210)
Q Consensus        77 ~~L~~L~l~~~~l~~~~~~~l~   98 (210)
                      ++|++|+|++|.+.......+.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~   23 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALA   23 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHH
Confidence            5788888888887665554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 2   KLRQLRKLSIRPQNGNG-KDLCGLIANLKNLESLTVEMTSK-----EEILDLLSLSSPP- 54
           +   L  L++     N  + L   IA+L  L  L++    +     E +    +      
Sbjct: 125 QFAGLETLTL---ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 55  -QYLQRLYLTGNM-KKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTY 112
              LQ L L     + LP  I  L+NL  L +  S L+     +      L E+ L G  
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP-KLEELDLRGCT 240

Query: 113 DYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHL 172
               +    G    L++L+L D   + ++ ++   +  + +L +  C  L  +P  I  L
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 173 KNLKLL 178
               ++
Sbjct: 301 PANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 32/198 (16%)

Query: 3   LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYL 62
           L Q ++      + N        AN  N +  T    + +   DLL  ++ P     L L
Sbjct: 32  LSQWQRHYN--ADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPG-RVALEL 88

Query: 63  TGN-MKKLPDWIFKLKNLIRLGLELSGLAEEP--------IRVLQASPNLLEILLTGTYD 113
               + + PD  F+L +L  + ++ +GL E P        +  L  + N L  L      
Sbjct: 89  RSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL------ 142

Query: 114 YELFHFEAGWFPKLQKLLLWDF---------IAVKSVIIEKGAVPDIRELRIGPCPLLME 164
                       +L++L +            +A      E   + +++ LR+     +  
Sbjct: 143 ----PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRS 197

Query: 165 IPIGIEHLKNLKLLKFAG 182
           +P  I +L+NLK LK   
Sbjct: 198 LPASIANLQNLKSLKIRN 215

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 19/166 (11%), Positives = 46/166 (27%), Gaps = 30/166 (18%)

Query: 14  QNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNM-KKLPDW 72
           +    K            + +   + S  +   +   S       ++    N    +   
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 73  IFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLL 132
           + +L  L +  +  S    E I     + N        T D +  +        L  + +
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-----LKDLTDVEV 256

Query: 133 WDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLL 178
           ++                        CP L ++P  ++ L  ++L+
Sbjct: 257 YN------------------------CPNLTKLPTFLKALPEMQLI 278

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 14/108 (12%)

Query: 3   LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYL 62
              L++LS+   +     L  L + L  L +   ++TS         L   P  LQ L +
Sbjct: 140 PPGLQELSVS--DNQLASLPALPSELCKLWAYNNQLTS---------LPMLPSGLQELSV 188

Query: 63  TGN-MKKLPDWIFKLKNLIRLGLELSGLAEEP--IRVLQASPNLLEIL 107
           + N +  LP    +L  L      L+ L   P  ++ L  S N L  L
Sbjct: 189 SDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.69
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.67
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.65
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.65
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.65
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.64
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.63
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.63
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.62
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.62
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.61
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.61
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.61
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.59
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.59
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.57
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.57
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.57
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.56
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.56
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.56
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.56
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.56
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.52
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.52
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.52
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.51
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.51
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.5
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.5
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.5
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.5
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.49
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.49
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.48
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.48
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.46
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.45
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.44
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.44
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.41
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.41
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.39
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.39
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.38
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.37
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.36
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.36
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.35
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.35
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.34
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.32
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.31
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.3
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.3
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.29
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.21
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.2
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.19
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.18
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.1
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.1
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.09
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.99
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.95
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.89
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.87
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.81
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.78
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.75
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.34
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.17
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.41
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	91.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.21

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.4e-20  Score=146.51  Aligned_cols=125  Identities=23%  Similarity=0.271  Sum_probs=56.7

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD  134 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  134 (210)
                      +|++|++.+ .++.+|.+++.+++|++|++++|.++..+ ..++.+++|++|+++++.....++.....+++|+.|++.+
T Consensus       184 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             TCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             CCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence            444444444 44444444444455555555554443321 2344445555555543322222333333444555555554


Q ss_pred             cCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeee
Q 039786          135 FIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFA  181 (210)
Q Consensus       135 ~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~  181 (210)
                      |.....++...+.+++|++|++++|+.++.+|..+..+++|+.+++.
T Consensus       263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            44444443333444555555555554444455555555554444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=1.6e-19  Score=140.62  Aligned_cols=177  Identities=23%  Similarity=0.321  Sum_probs=130.2

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-c-CccCChhhhc----
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-N-MKKLPDWIFK----   75 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~-~~~~p~~~~~----   75 (210)
                      ++++|++|++++  .....++..++++++|++|++++|... .. ...+..++ +|++|++.+ . ...+|..+..    
T Consensus       102 ~l~~L~~L~L~~--n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~l-p~~l~~l~-~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A          102 RLSHLQHMTIDA--AGLMELPDTMQQFAGLETLTLARNPLR-AL-PASIASLN-RLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             GGTTCSEEEEES--SCCCCCCSCGGGGTTCSEEEEESCCCC-CC-CGGGGGCT-TCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             hCCCCCEEECCC--CCccchhHHHhccCCCCEEECCCCccc-cC-cHHHhcCc-CCCEEECCCCCCccccChhHhhccch
Confidence            467788888875  222255667778888888888876544 22 23455666 788888876 3 3446665543    


Q ss_pred             -----CCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCc
Q 039786           76 -----LKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPD  150 (210)
Q Consensus        76 -----l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  150 (210)
                           +++|++|++++|.++.. +..++.+++|++|+++++... .++.....+++|+.|++.+|.....++...+.+++
T Consensus       177 ~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  254 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP  254 (328)
T ss_dssp             CCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred             hhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence                 88888888888887643 456788899999999844322 23334566789999999988877777766778999


Q ss_pred             ccEEEeccCCCCCcccccccccccccceeeecchH
Q 039786          151 IRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       151 L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~~  185 (210)
                      |++|++.+|...+.+|..+..+++|++|++.+|+.
T Consensus       255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred             CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence            99999999988888999999999999999999753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=2.4e-18  Score=131.27  Aligned_cols=179  Identities=19%  Similarity=0.157  Sum_probs=120.6

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC-ChhhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-p~~~~~l~~L   79 (210)
                      ++++|++|++++ .......+..++.+++|++|++++|..........+..++ +|++|++.+ .++.+ |..+..+++|
T Consensus        54 ~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           54 ACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCC
Confidence            467777777774 2222222556777788888888776534444344556666 788888877 66664 4567778888


Q ss_pred             cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEecccCcceeeEEccCCCCcccEEEecc
Q 039786           80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGP  158 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~  158 (210)
                      ++|++++|.++..+...++.+++|++|+++++... .+.. ....+++|+.|++.++......+.....+++|+.|++.+
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence            88888888877766666778888888888744222 2222 245577888888887653322233445678899999998


Q ss_pred             CCCCCcccc-cccccccccceeeecch
Q 039786          159 CPLLMEIPI-GIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       159 ~~~l~~lp~-~l~~l~~L~~l~l~~~~  184 (210)
                      |. ++.+|. .+..+++|++|++.+++
T Consensus       211 n~-l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          211 NN-LSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             SC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             Cc-CCcCCHHHcccCcccCEEeccCCC
Confidence            87 555554 46788999999998854

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.74  E-value=3.7e-18  Score=132.03  Aligned_cols=180  Identities=18%  Similarity=0.090  Sum_probs=119.8

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCc-cCChhhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~p~~~~~l~~L   79 (210)
                      ++++|++|++++.......++..++++++|++|++++|......+ ..+..++ +|++|++.+ .++ .+|..+..+++|
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L  151 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCCC-CCCEEeCCCCccCCcCChHHhcCCCC
Confidence            578899999983123344567778899999999998876543322 3456666 888888887 666 477788888888


Q ss_pred             cEEEEEeecCCCcchhhhhcCC-CccEEEecCccCCcce-----------------------EecCCCCCcccEEEeccc
Q 039786           80 IRLGLELSGLAEEPIRVLQASP-NLLEILLTGTYDYELF-----------------------HFEAGWFPKLQKLLLWDF  135 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~~  135 (210)
                      ++|++++|.++...+..++.++ +|++|+++++.....+                       +.....+++|+.|++.++
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  231 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence            8888888887655566777776 7888887633211111                       111234556666666654


Q ss_pred             CcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          136 IAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       136 ~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      .. .........+++|++|++.+|.....+|..+..+++|++|++.++.
T Consensus       232 ~l-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          232 SL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EE-CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             ce-eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            32 1111223456788888888887444678788888888888888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.73  E-value=8.7e-18  Score=129.97  Aligned_cols=130  Identities=19%  Similarity=0.237  Sum_probs=99.4

Q ss_pred             CCCcEEEEEecCCCcc--hHHHHhhcCCCCceEEEEe-cCcccccccccccCCccCceEEEeec-cCc-cCChhhhcCCC
Q 039786            4 RQLRKLSIRPQNGNGK--DLCGLIANLKNLESLTVEM-TSKEEILDLLSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKN   78 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~p~~~~~l~~   78 (210)
                      .+++.|++++ .....  .++..++++++|++|++++ +...... ...+..++ +|++|++.+ .++ .+|..+..+++
T Consensus        50 ~~l~~L~L~~-~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSG-LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEEC-CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCC-CCccCCcccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCC
Confidence            5789999996 33333  6788999999999999995 4443333 34567777 999999998 777 58989999999


Q ss_pred             ccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCC-cccEEEecccC
Q 039786           79 LIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFP-KLQKLLLWDFI  136 (210)
Q Consensus        79 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~  136 (210)
                      |++|++++|.++...+..++.+++|++|+++++.....++.....++ +|+.|++.++.
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence            99999999998766677889999999999984433223333444555 78888887654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=7.3e-17  Score=123.49  Aligned_cols=174  Identities=20%  Similarity=0.151  Sum_probs=132.6

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRL   82 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L   82 (210)
                      ++++.|++++ +......+..++.+++|++|++++|......   ....++ +|++|++++ .++.+|..+..+++|++|
T Consensus        31 ~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~L  105 (290)
T 1p9a_G           31 KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---VDGTLP-VLGTLDLSHNQLQSLPLLGQTLPALTVL  105 (290)
T ss_dssp             TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCCEEE---CCSCCT-TCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred             CCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCccCccc---CCCCCC-cCCEEECCCCcCCcCchhhccCCCCCEE
Confidence            4677777774 3333333567888999999999886543322   224556 899999998 888899888999999999


Q ss_pred             EEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEcc-CCCCcccEEEeccCCC
Q 039786           83 GLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEK-GAVPDIRELRIGPCPL  161 (210)
Q Consensus        83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~~~~  161 (210)
                      ++++|.++..+...++.+++|++|+++++............+++|+.|++.++. +..++... ..+++|++|++.+|. 
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-  183 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-  183 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc-
Confidence            999999988777889999999999998443222111123467899999998765 45555432 468999999999998 


Q ss_pred             CCcccccccccccccceeeecch
Q 039786          162 LMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       162 l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ++.+|.++....+|+.+++.+++
T Consensus       184 l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          184 LYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CCccChhhcccccCCeEEeCCCC
Confidence            78899999888999999999754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=1.5e-17  Score=128.06  Aligned_cols=178  Identities=16%  Similarity=0.127  Sum_probs=87.8

Q ss_pred             CCCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh--hhhcCC
Q 039786            2 KLRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD--WIFKLK   77 (210)
Q Consensus         2 ~L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~--~~~~l~   77 (210)
                      ++++|++|++++ ........+..+..+++|++|++++|..... + ..+..++ +|++|++.+ .++.++.  .+..++
T Consensus        50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~  126 (306)
T 2z66_A           50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-S-SNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLR  126 (306)
T ss_dssp             TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-E-EEEETCT-TCCEEECTTSEEESSTTTTTTTTCT
T ss_pred             ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-h-hhcCCCC-CCCEEECCCCcccccccchhhhhcc
Confidence            567888888875 1111122234555677777777777543321 1 1233344 566666555 4444332  344555


Q ss_pred             CccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCc-ceEecC------------------------CCCCcccEEEe
Q 039786           78 NLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYE-LFHFEA------------------------GWFPKLQKLLL  132 (210)
Q Consensus        78 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~------------------------~~~~~L~~L~l  132 (210)
                      +|++|++++|.+.......++.+++|++|+++++.... ..+...                        ..+++|+.|++
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  206 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  206 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence            55555555555444333444455555555554221111 111122                        33445555555


Q ss_pred             cccCcceeeE-EccCCCCcccEEEeccCCCCCccccccccc-ccccceeeecc
Q 039786          133 WDFIAVKSVI-IEKGAVPDIRELRIGPCPLLMEIPIGIEHL-KNLKLLKFAGM  183 (210)
Q Consensus       133 ~~~~~l~~~~-~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l-~~L~~l~l~~~  183 (210)
                      .++.. ..++ .....+++|++|++++|......|..+..+ ++|++|++.++
T Consensus       207 ~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          207 SHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             TTSCC-SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             CCCcc-CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence            54432 1111 123345666666666666334445555555 37777777664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=4e-16  Score=116.01  Aligned_cols=176  Identities=15%  Similarity=0.051  Sum_probs=111.5

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCC-hhhhcCCCcc
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLP-DWIFKLKNLI   80 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p-~~~~~l~~L~   80 (210)
                      ++|++|++++ ..........++++++|++|++++|......+...+..++ +|++|++.+  .++.+| ..+..+++|+
T Consensus        31 ~~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CcccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            3688888885 2222222346778888888888886534444444566666 788888874  566655 3567788888


Q ss_pred             EEEEEeecCCCcchhhhhcCCCcc---EEEecCccCCcceEe-cCCCCCccc-EEEecccCcceeeEEccCCCCcccEEE
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLL---EILLTGTYDYELFHF-EAGWFPKLQ-KLLLWDFIAVKSVIIEKGAVPDIRELR  155 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~-~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~L~~L~  155 (210)
                      +|++++|.++..+  .++.+++|+   +|+++++.....++. ....+++|+ .|++.++. +..++......++|+.|+
T Consensus       109 ~L~l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~  185 (239)
T 2xwt_C          109 FLGIFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVY  185 (239)
T ss_dssp             EEEEEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEE
T ss_pred             EEeCCCCCCcccc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEE
Confidence            8888888876633  366677776   888874412222222 234567777 88877654 334443332336788888


Q ss_pred             eccCCCCCcccc-ccccc-ccccceeeecch
Q 039786          156 IGPCPLLMEIPI-GIEHL-KNLKLLKFAGMV  184 (210)
Q Consensus       156 i~~~~~l~~lp~-~l~~l-~~L~~l~l~~~~  184 (210)
                      +.+|..++.+|. .+..+ ++|++|++.++.
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence            888854666644 35667 788888887754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.69  E-value=1.2e-16  Score=121.79  Aligned_cols=178  Identities=16%  Similarity=0.113  Sum_probs=134.7

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-c-CccC-ChhhhcCCCc
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-N-MKKL-PDWIFKLKNL   79 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~-~~~~-p~~~~~l~~L   79 (210)
                      .++|++|++++ .......+..++.+++|++|+++++.. .......+..++ +|++|++.+ . ++.+ |..+..+++|
T Consensus        31 ~~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L  107 (285)
T 1ozn_A           31 PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRL  107 (285)
T ss_dssp             CTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCcc-ceeCHhhcCCcc-CCCEEeCCCCCCccccCHHHhcCCcCC
Confidence            46899999985 233333345688999999999998644 333345567777 899999998 4 7776 6678899999


Q ss_pred             cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEecc
Q 039786           80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGP  158 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~  158 (210)
                      ++|++++|.++..+...++.+++|++|+++++............+++|+.|++.++. +..++.. ...+++|+.|++.+
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence            999999999888777788999999999998443222222224567899999999874 4444432 45689999999999


Q ss_pred             CCCCCcccccccccccccceeeecch
Q 039786          159 CPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       159 ~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      |......|..+..+++|++|++.++.
T Consensus       187 n~l~~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          187 NRVAHVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcccccCHhHccCcccccEeeCCCCc
Confidence            98444447788899999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.69  E-value=2.9e-16  Score=124.80  Aligned_cols=104  Identities=18%  Similarity=0.196  Sum_probs=43.0

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh-hhcCCCcc
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNLI   80 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-~~~l~~L~   80 (210)
                      +++|++|++++ .......+..++.+++|++|++++|... ..+...+..++ +|++|++.+ .++.+|.. ++.+++|+
T Consensus        68 l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           68 FRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             CCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            44555555553 1111111234455555555555543321 11112233333 444444444 44444432 23444444


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      +|++++|.+...+...++.+++|++|+++
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECC
Confidence            44444444433333334444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.69  E-value=1.8e-16  Score=120.04  Aligned_cols=176  Identities=21%  Similarity=0.228  Sum_probs=129.9

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIR   81 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~   81 (210)
                      ++|++|++++ .......+..++++++|++|+++++... ..+...+..++ +|++|++.+ .++.+|. .+..+++|++
T Consensus        37 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK-NLETLWVTDNKLQALPIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCT-TCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred             CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCC-CCCEEECCCCcCCcCCHhHcccccCCCE
Confidence            4689999986 2222222346888999999999986543 33334456676 899999998 7777664 5678999999


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEeccCC
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCP  160 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~  160 (210)
                      |++++|.++..+...++.+++|++|+++.+............+++|+.|++.++. +..++.. ...+++|++|++.+|.
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCc
Confidence            9999999888777788999999999998443222111124567899999998765 3444332 4568999999999997


Q ss_pred             CCCccccc-ccccccccceeeecch
Q 039786          161 LLMEIPIG-IEHLKNLKLLKFAGMV  184 (210)
Q Consensus       161 ~l~~lp~~-l~~l~~L~~l~l~~~~  184 (210)
                       ++.+|.. +..+++|+.|++.+++
T Consensus       193 -l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          193 -LKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             -CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -CCcCCHHHhccccCCCEEEecCCC
Confidence             6666664 6789999999998864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=6.7e-17  Score=124.41  Aligned_cols=177  Identities=16%  Similarity=0.134  Sum_probs=126.5

Q ss_pred             CCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccc-cccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            4 RQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILD-LLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      ++|++|++++  .....++ ..++++++|++|++++|....... ...+..++ +|++|++.+ .++.+|..+..+++|+
T Consensus        28 ~~l~~L~L~~--n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           28 SSATRLELES--NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLE  104 (306)
T ss_dssp             TTCCEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred             CCCCEEECCC--CccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCCccccChhhcCCCCCCC
Confidence            5899999986  2223344 347899999999999875432210 12234455 899999998 7778888888999999


Q ss_pred             EEEEEeecCCCcch-hhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcce-eeEEccCCCCcccEEEecc
Q 039786           81 RLGLELSGLAEEPI-RVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVK-SVIIEKGAVPDIRELRIGP  158 (210)
Q Consensus        81 ~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~i~~  158 (210)
                      +|++++|.++..+. ..+..+++|++|+++++............+++|+.|++.++.... ..+.....+++|++|++++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            99999998777554 578899999999998543222222234567899999998775332 2344455678888888888


Q ss_pred             CCCCCcc-cccccccccccceeeecch
Q 039786          159 CPLLMEI-PIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       159 ~~~l~~l-p~~l~~l~~L~~l~l~~~~  184 (210)
                      |. ++.+ |..+..+++|++|++.++.
T Consensus       185 n~-l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          185 CQ-LEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             SC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CC-cCCcCHHHhcCCCCCCEEECCCCc
Confidence            87 4443 5666777888888887764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=3e-16  Score=131.31  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=45.5

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh-hhcCCCcc
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNLI   80 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-~~~l~~L~   80 (210)
                      +++|++|++++ .......+..++.+++|++|++++|.... .+...+..++ +|++|++.+ .++.+|.. ++.+++|+
T Consensus        74 l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           74 FRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             CCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEECCC-CCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            45555555553 11122222345555555555555543222 2222233343 455555544 44444432 24445555


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      +|++++|.++..+...++.+++|++|+++
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            55555544444333344444444444444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.68  E-value=1.4e-16  Score=136.90  Aligned_cols=104  Identities=23%  Similarity=0.306  Sum_probs=63.2

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCc-cCChhhhcCCCcc
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNLI   80 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~p~~~~~l~~L~   80 (210)
                      +++|++|++++ +.....++..++.+++|+.|++++|...+..+ ..+..++ +|++|++.+ .++ .+|.+++.+++|+
T Consensus       441 l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~  517 (768)
T 3rgz_A          441 LSKLRDLKLWL-NMLEGEIPQELMYVKTLETLILDFNDLTGEIP-SGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLA  517 (768)
T ss_dssp             CTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             CCCCCEEECCC-CcccCcCCHHHcCCCCceEEEecCCcccCcCC-HHHhcCC-CCCEEEccCCccCCcCChHHhcCCCCC
Confidence            44555555553 22233344555556666666666544332221 2344455 677777776 555 4777777777788


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      +|++++|.++...+..++.+++|++|+++
T Consensus       518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          518 ILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             EEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             EEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            88887777766556677777777777776

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.68  E-value=3.1e-17  Score=137.25  Aligned_cols=177  Identities=12%  Similarity=0.032  Sum_probs=89.3

Q ss_pred             CCCCCcEEEEEecCCCcch---HHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc---------
Q 039786            2 KLRQLRKLSIRPQNGNGKD---LCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK---------   68 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~---------   68 (210)
                      ++++|++|++++  .....   .+..++.+++|++|++++|..... + ..+..++ +|++|++.+ .+..         
T Consensus       348 ~l~~L~~L~ls~--n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~  422 (606)
T 3vq2_A          348 ALPSLSYLDLSR--NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-S-ANFMGLE-ELQHLDFQHSTLKRVTEFSAFLS  422 (606)
T ss_dssp             CCTTCCEEECCS--SCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-C-CCCTTCT-TCCEEECTTSEEESTTTTTTTTT
T ss_pred             cCCCCCEEECcC--CccCCCcchhhhhccCCcccEeECCCCccccc-h-hhccCCC-CCCeeECCCCccCCccChhhhhc
Confidence            567777777774  22122   245566777777777766543221 1 2333343 455555544 3333         


Q ss_pred             -----------------CChhhhcCCCccEEEEEeecCCCc-chhhhhcCCCccEEEecCccCCcceEecCCCCCcccEE
Q 039786           69 -----------------LPDWIFKLKNLIRLGLELSGLAEE-PIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKL  130 (210)
Q Consensus        69 -----------------~p~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  130 (210)
                                       .|..++.+++|++|++++|.+... .+..++.+++|+.|+++++......+.....+++|+.|
T Consensus       423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  502 (606)
T 3vq2_A          423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL  502 (606)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence                             333344444555555544444331 23334455555555554332111111123345566666


Q ss_pred             EecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccc-cccceeeecch
Q 039786          131 LLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLK-NLKLLKFAGMV  184 (210)
Q Consensus       131 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~-~L~~l~l~~~~  184 (210)
                      ++.++.-....+.....+++|+.|++++|. ++.+|..+..++ +|+++++.+++
T Consensus       503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             ECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred             ECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence            666554322223334456667777777666 556666666665 47777776643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.67  E-value=3.1e-16  Score=118.90  Aligned_cols=174  Identities=21%  Similarity=0.184  Sum_probs=130.3

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L   79 (210)
                      ++++|+.|++++  ..... .+.++.+++|++|++++|....   +..+..++ +|++|++.+ .++.++. .++.+++|
T Consensus        39 ~l~~L~~L~l~~--~~i~~-~~~l~~l~~L~~L~l~~n~l~~---~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           39 ELNSIDQIIANN--SDIKS-VQGIQYLPNVRYLALGGNKLHD---ISALKELT-NLTYLILTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             HHTTCCEEECTT--SCCCC-CTTGGGCTTCCEEECTTSCCCC---CGGGTTCT-TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccceeeeeeCC--CCccc-ccccccCCCCcEEECCCCCCCC---chhhcCCC-CCCEEECCCCccCccChhHhcCCcCC
Confidence            357899999986  22222 3457889999999999876543   23566677 899999998 7887654 46889999


Q ss_pred             cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEecc
Q 039786           80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGP  158 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~  158 (210)
                      ++|++++|.++..+...++.+++|++|+++++............+++|+.|++.++. +..++.. .+.+++|++|++.+
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCC
Confidence            999999999888777778999999999998553222122223567899999999875 4444433 35689999999999


Q ss_pred             CCCCCcccc-cccccccccceeeecch
Q 039786          159 CPLLMEIPI-GIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       159 ~~~l~~lp~-~l~~l~~L~~l~l~~~~  184 (210)
                      |. ++.+|. .+..+++|++|++.+++
T Consensus       191 N~-l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          191 NQ-LKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             Cc-CCccCHHHHhCCcCCCEEEccCCC
Confidence            98 555554 46889999999998854

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.67  E-value=3.3e-16  Score=127.53  Aligned_cols=179  Identities=18%  Similarity=0.199  Sum_probs=83.1

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L   79 (210)
                      ++++|++|++++ +......+.+++++++|++|++++|... ..+...+..++ +|++|++.+ .+.. .|..+..+++|
T Consensus        54 ~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           54 SFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCCEEECCC-CccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCC-CCCEEECCCCccccCChhHccccccC
Confidence            355566666653 2222222444555566666666554321 12212233333 455554444 3332 22233344444


Q ss_pred             cEEEEEe------------------------ecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEeccc
Q 039786           80 IRLGLEL------------------------SGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDF  135 (210)
Q Consensus        80 ~~L~l~~------------------------~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  135 (210)
                      ++|++++                        |.++..+...+..+++|+.|+++++............+++|+.|++.++
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            4444444                        4433333333444444444444422111111112234455666666555


Q ss_pred             CcceeeEEccCCCCcccEEEeccCCCCCcccc-cccccccccceeeecch
Q 039786          136 IAVKSVIIEKGAVPDIRELRIGPCPLLMEIPI-GIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       136 ~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~-~l~~l~~L~~l~l~~~~  184 (210)
                      .....++.......+|+.|++.+|. ++.+|. .+..+++|++|++.++.
T Consensus       211 ~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          211 PYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             TTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc
Confidence            5444444333334467777777665 555553 45677788888887764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.66  E-value=1.2e-16  Score=137.24  Aligned_cols=128  Identities=18%  Similarity=0.149  Sum_probs=64.8

Q ss_pred             CceEEEeec-cCc-cCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-------------
Q 039786           56 YLQRLYLTG-NMK-KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-------------  120 (210)
Q Consensus        56 ~L~~L~l~~-~~~-~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------  120 (210)
                      +|++|++.+ .++ .+|.+++.+++|++|++++|.++...+..++.+++|++|+++++.....++..             
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            566666655 444 35555666666666666666554444445555555555555533222222222             


Q ss_pred             -----------CCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786          121 -----------AGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       121 -----------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~  183 (210)
                                 ...+++|+.|++.++.....++...+.+++|+.|++.+|.....+|..+..+++|++|++.++
T Consensus       475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence                       233445555555544433233333344555555555555533345555555666666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=3.4e-16  Score=113.13  Aligned_cols=152  Identities=17%  Similarity=0.174  Sum_probs=101.1

Q ss_pred             hcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCcc
Q 039786           26 ANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLL  104 (210)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  104 (210)
                      +.+++|++|+++++... .  +..+..++ +|++|++.+ .++.++ .+..+++|++|++++|.++...+..++.+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~--l~~l~~l~-~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-D--LTGIEYAH-NIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-C--CTTGGGCT-TCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-C--hHHHhcCC-CCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            45567778888775443 2  12355555 788888877 444444 667778888888888777665566677788888


Q ss_pred             EEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          105 EILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       105 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      +|+++.+............+++|+.|++.+|..+..++ ....+++|++|++.+|. ++.++ .+..+++|++|++.+++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcc
Confidence            88887443222222334567788888887776444443 45568888999998887 66666 67888899999988875


Q ss_pred             H
Q 039786          185 K  185 (210)
Q Consensus       185 ~  185 (210)
                      .
T Consensus       193 i  193 (197)
T 4ezg_A          193 I  193 (197)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=2.8e-16  Score=119.25  Aligned_cols=126  Identities=17%  Similarity=0.130  Sum_probs=62.9

Q ss_pred             CceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcc-hhhhhcCCCccEEEecCccCCcceEecCCCCCccc----
Q 039786           56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEP-IRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQ----  128 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----  128 (210)
                      +|++|++.+ .+..++. .++.+++|++|++++|.++... +..++.+++|+.|+++++............+++|+    
T Consensus       101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l  180 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred             cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence            444444444 3333322 3444455555555555444322 33444555555555542211110000111122222    


Q ss_pred             EEEecccCcceeeEEccCCCCcccEEEeccCCCCCccccc-ccccccccceeeecc
Q 039786          129 KLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGM  183 (210)
Q Consensus       129 ~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~  183 (210)
                      .+++.++. +..++.......+|+.|++.+|. ++.+|.. +..+++|++|++.++
T Consensus       181 ~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          181 SLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             EEECCSSC-CCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred             eeecCCCc-ccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence            44444432 22232222334589999999988 6777765 478999999999964

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.66  E-value=5e-16  Score=119.82  Aligned_cols=166  Identities=17%  Similarity=0.238  Sum_probs=91.1

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccE
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIR   81 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~   81 (210)
                      +++|++|++++  .....++. ++.+++|++|++++|....   +..+..++ +|++|++.+ .++.++. +..+++|++
T Consensus        62 l~~L~~L~L~~--n~i~~~~~-~~~l~~L~~L~L~~n~l~~---~~~~~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~  133 (308)
T 1h6u_A           62 LNNLIGLELKD--NQITDLAP-LKNLTKITELELSGNPLKN---VSAIAGLQ-SIKTLDLTSTQITDVTP-LAGLSNLQV  133 (308)
T ss_dssp             CTTCCEEECCS--SCCCCCGG-GTTCCSCCEEECCSCCCSC---CGGGTTCT-TCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred             cCCCCEEEccC--CcCCCChh-HccCCCCCEEEccCCcCCC---chhhcCCC-CCCEEECCCCCCCCchh-hcCCCCCCE
Confidence            45556666654  11122222 5555666666666543322   12344444 666666665 5555543 566666666


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCC
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPL  161 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~  161 (210)
                      |++++|.++..+  .++.+++|++|+++++.... +. ....+++|+.|++.++. +..++. ...+++|++|++++|. 
T Consensus       134 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~-  206 (308)
T 1h6u_A          134 LYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSD-LT-PLANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQ-  206 (308)
T ss_dssp             EECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTSC-
T ss_pred             EECCCCccCcCc--cccCCCCccEEEccCCcCCC-Ch-hhcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCCc-
Confidence            666666655432  25666667777666332111 11 14456677777776653 222221 3456777777777776 


Q ss_pred             CCcccccccccccccceeeecch
Q 039786          162 LMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       162 l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ++.++ .+..+++|++|++.+++
T Consensus       207 l~~~~-~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          207 ISDVS-PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CCBCG-GGTTCTTCCEEEEEEEE
T ss_pred             cCccc-cccCCCCCCEEEccCCe
Confidence            45555 36677777777777754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=3.7e-15  Score=121.32  Aligned_cols=178  Identities=14%  Similarity=0.043  Sum_probs=114.8

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCccCChhhhcCCCcc
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~p~~~~~l~~L~   80 (210)
                      +++|++|++++ ..........++++++|+.|++.++.... .....+..++ +|++|++.+  ....+|.......+|+
T Consensus       151 l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~  227 (477)
T 2id5_A          151 LNSLEQLTLEK-CNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLT  227 (477)
T ss_dssp             CTTCCEEEEES-CCCSSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred             CCCCCEEECCC-CcCcccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCc-ccceeeCCCCccccccCcccccCcccc
Confidence            44555555543 11111122345555566666665543322 2223445555 777777776  3344565555566889


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      .|++++|.++..+...+..+++|+.|+++++............+++|+.|++.++......+.....+++|+.|++.+|.
T Consensus       228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence            99999998887777788999999999998443222122234567899999999875333223344578999999999997


Q ss_pred             CCCccccc-ccccccccceeeecch
Q 039786          161 LLMEIPIG-IEHLKNLKLLKFAGMV  184 (210)
Q Consensus       161 ~l~~lp~~-l~~l~~L~~l~l~~~~  184 (210)
                       ++.+|.. +..+++|++|++.+++
T Consensus       308 -l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          308 -LTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             -CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             -CceeCHhHcCCCcccCEEEccCCC
Confidence             6666654 5789999999998865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.65  E-value=3.1e-16  Score=131.21  Aligned_cols=178  Identities=16%  Similarity=0.044  Sum_probs=106.5

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccc-cccccCCccCceEEEeec-cCccCChhhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILD-LLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L   79 (210)
                      ++++|++|++++ ......+  .++.+++|++|++++|....... ...+..++ +|++|++.+ .++.+|..+..+++|
T Consensus       326 ~l~~L~~L~l~~-n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~l~~L  401 (606)
T 3vq2_A          326 DLPFLKSLTLTM-NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAIIMSANFMGLEEL  401 (606)
T ss_dssp             CCSSCCEEEEES-CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS-CCCEEECCSCSEEEECCCCTTCTTC
T ss_pred             CCCccceeeccC-CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCC-cccEeECCCCccccchhhccCCCCC
Confidence            478999999996 2222322  56789999999999875543311 23345666 899999998 777788778888899


Q ss_pred             cEEEEEeecCCCcch-hhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCccee-eEEccCCCCcccEEEec
Q 039786           80 IRLGLELSGLAEEPI-RVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKS-VIIEKGAVPDIRELRIG  157 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L~i~  157 (210)
                      +.|++++|.+..... ..++.+++|++|+++++......+.....+++|+.|++.++..... .+...+.+++|+.|+++
T Consensus       402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  481 (606)
T 3vq2_A          402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS  481 (606)
T ss_dssp             CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence            999998888666543 5667778888888774432222222233445555555555432221 22223344555555555


Q ss_pred             cCCCCCcccccccccccccceeeecc
Q 039786          158 PCPLLMEIPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       158 ~~~~l~~lp~~l~~l~~L~~l~l~~~  183 (210)
                      +|......|..+..+++|++|+++++
T Consensus       482 ~n~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          482 KCQLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCccChhhhcccccCCEEECCCC
Confidence            54422222333444444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=8.9e-16  Score=124.31  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=21.4

Q ss_pred             CCCcccEEEeccCCCCCccccc-ccccccccceeeecch
Q 039786          147 AVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGMV  184 (210)
Q Consensus       147 ~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~~  184 (210)
                      .+++|+.|++.+|. ++.+|.. +..+++|++|++.+++
T Consensus       264 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          264 GLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence            45566666666665 4444433 3556667777776643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.65  E-value=1.3e-15  Score=122.94  Aligned_cols=177  Identities=18%  Similarity=0.136  Sum_probs=77.9

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L   79 (210)
                      ++++|++|++++ +......+..++++++|++|++++|... ..+...+..++ +|++|++.+ .++.+|. .+..+++|
T Consensus        86 ~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L  162 (440)
T 3zyj_A           86 HLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSL  162 (440)
T ss_dssp             SCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCS-SCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             CCCCCCEEECCC-CcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccc-cCceeeCCCCcccccCHHHhhhCccc
Confidence            345555555553 1122222344555555666666554322 22222334444 555555555 4444332 34444555


Q ss_pred             cEEEEEeec-CCCcchhhhhcCCCccEEEecCccCCcceE-----------------------ecCCCCCcccEEEeccc
Q 039786           80 IRLGLELSG-LAEEPIRVLQASPNLLEILLTGTYDYELFH-----------------------FEAGWFPKLQKLLLWDF  135 (210)
Q Consensus        80 ~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----------------------~~~~~~~~L~~L~l~~~  135 (210)
                      ++|++.+|. +...+...+.++++|++|+++++... .++                       .....+++|+.|++.++
T Consensus       163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence            555554433 33233333444555555554422111 111                       11122333444444333


Q ss_pred             CcceeeE-EccCCCCcccEEEeccCCCCCccccc-ccccccccceeeecch
Q 039786          136 IAVKSVI-IEKGAVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGMV  184 (210)
Q Consensus       136 ~~l~~~~-~~~~~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~~  184 (210)
                      . +..+. .....+++|+.|++.+|. ++.+|.. +..+++|+.|++.+++
T Consensus       242 ~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          242 Q-IQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             C-CCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             c-eeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence            2 11111 112345666666666665 4444433 3566777777776644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.65  E-value=3e-16  Score=121.09  Aligned_cols=168  Identities=17%  Similarity=0.169  Sum_probs=128.6

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      ++++|++|++++  .....+ +.++.+++|+.|++++|......   .+..++ +|++|++.+ .++.++ .+..+++|+
T Consensus        39 ~l~~L~~L~l~~--~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~---~~~~l~-~L~~L~L~~n~l~~~~-~~~~l~~L~  110 (308)
T 1h6u_A           39 DLDGITTLSAFG--TGVTTI-EGVQYLNNLIGLELKDNQITDLA---PLKNLT-KITELELSGNPLKNVS-AIAGLQSIK  110 (308)
T ss_dssp             HHHTCCEEECTT--SCCCCC-TTGGGCTTCCEEECCSSCCCCCG---GGTTCC-SCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred             HcCCcCEEEeeC--CCccCc-hhhhccCCCCEEEccCCcCCCCh---hHccCC-CCCEEEccCCcCCCch-hhcCCCCCC
Confidence            367899999986  222233 35788999999999987554332   266677 899999998 777776 688899999


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      +|++++|.++..  ..++.+++|++|+++++.... +. ....+++|+.|++.++. +..++. ...+++|+.|++.+|.
T Consensus       111 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN-IS-PLAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc-Cc-cccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCc
Confidence            999999998774  358899999999998443222 11 25567899999999875 343332 5678999999999998


Q ss_pred             CCCcccccccccccccceeeecchH
Q 039786          161 LLMEIPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       161 ~l~~lp~~l~~l~~L~~l~l~~~~~  185 (210)
                       ++.++. +..+++|++|+++++..
T Consensus       185 -l~~~~~-l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          185 -ISDISP-LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             -CCCCGG-GGGCTTCCEEECTTSCC
T ss_pred             -cCcChh-hcCCCCCCEEEccCCcc
Confidence             666664 78899999999999753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.65  E-value=6.7e-16  Score=122.70  Aligned_cols=88  Identities=19%  Similarity=0.155  Sum_probs=50.1

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC-ChhhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-p~~~~~l~~L   79 (210)
                      ++++|++|++++ .......+..++++++|++|++++|... ..+...+..++ +|++|++.+ .++.+ |..+..+++|
T Consensus        91 ~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A           91 YAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred             CCCCcCEEECCC-CCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCC
Confidence            456777777764 2222222344666777777777765432 22222234455 677777766 55554 3346666777


Q ss_pred             cEEEEEeecCCCc
Q 039786           80 IRLGLELSGLAEE   92 (210)
Q Consensus        80 ~~L~l~~~~l~~~   92 (210)
                      ++|++++|.++..
T Consensus       168 ~~L~l~~n~l~~~  180 (390)
T 3o6n_A          168 QNLQLSSNRLTHV  180 (390)
T ss_dssp             CEEECCSSCCSBC
T ss_pred             CEEECCCCcCCcc
Confidence            7777777665543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.64  E-value=1.1e-15  Score=123.59  Aligned_cols=112  Identities=16%  Similarity=0.103  Sum_probs=63.5

Q ss_pred             hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCc
Q 039786           71 DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPD  150 (210)
Q Consensus        71 ~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  150 (210)
                      .+++.+++|++|++++|.++..+...++.+++|++|+++++............+++|+.|++.++......+.....+++
T Consensus       293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  372 (455)
T 3v47_A          293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN  372 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence            34455556666666666555544455556666666666533222211223345667777777665432211223445677


Q ss_pred             ccEEEeccCCCCCccccc-ccccccccceeeecc
Q 039786          151 IRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGM  183 (210)
Q Consensus       151 L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~  183 (210)
                      |++|++.+|. ++.+|.. +..+++|++|++.++
T Consensus       373 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          373 LKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccEEECCCCc-cccCCHhHhccCCcccEEEccCC
Confidence            7777777776 5555554 367777888887764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.2e-16  Score=123.91  Aligned_cols=179  Identities=18%  Similarity=0.110  Sum_probs=93.6

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh--hhhcCCC
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD--WIFKLKN   78 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~--~~~~l~~   78 (210)
                      ++++|++|++++ +......+..++++++|++|++++|.... .+...+..++ +|++|++.+ .++.+|.  .+..+++
T Consensus        74 ~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           74 RCVNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             cCCCCCEEECCC-CccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCC
Confidence            456666666653 22222223445666666666666543322 2212234444 566666655 4555543  4455555


Q ss_pred             ccEEEEEeec-CCCcchhhhhcCCCccEEEecCccCCcceEecCCC------------------------CCcccEEEec
Q 039786           79 LIRLGLELSG-LAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGW------------------------FPKLQKLLLW  133 (210)
Q Consensus        79 L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------------------------~~~L~~L~l~  133 (210)
                      |++|++++|. +...+...++++++|+.|+++.+......+.....                        +++|+.|++.
T Consensus       151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  230 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR  230 (353)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred             CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence            6666665553 44433444555555555555522111111111122                        3455555554


Q ss_pred             ccCccee-------------------------------eEEccCCCCcccEEEeccCCCCCcccccc-cccccccceeee
Q 039786          134 DFIAVKS-------------------------------VIIEKGAVPDIRELRIGPCPLLMEIPIGI-EHLKNLKLLKFA  181 (210)
Q Consensus       134 ~~~~l~~-------------------------------~~~~~~~~~~L~~L~i~~~~~l~~lp~~l-~~l~~L~~l~l~  181 (210)
                      ++.....                               ++...+.+++|+.|++++|. ++.+|.++ ..+++|++|++.
T Consensus       231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~  309 (353)
T 2z80_A          231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLH  309 (353)
T ss_dssp             SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEee
Confidence            4321100                               00012346789999999887 67888875 789999999999


Q ss_pred             cch
Q 039786          182 GMV  184 (210)
Q Consensus       182 ~~~  184 (210)
                      +++
T Consensus       310 ~N~  312 (353)
T 2z80_A          310 TNP  312 (353)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=5.6e-16  Score=119.72  Aligned_cols=177  Identities=18%  Similarity=0.067  Sum_probs=105.3

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHh--hcCCCCceEEEEecCcccccccccccCC-----ccCceEEEeec-cCccCC-hh
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLI--ANLKNLESLTVEMTSKEEILDLLSLSSP-----PQYLQRLYLTG-NMKKLP-DW   72 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~-----~~~L~~L~l~~-~~~~~p-~~   72 (210)
                      ++++|++|++++ ......++..+  +.+++|++|++++|..... + ..+..+     + +|++|++.+ .++.++ ..
T Consensus        93 ~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~~~~~-~L~~L~L~~N~l~~~~~~~  168 (312)
T 1wwl_A           93 GISGLQELTLEN-LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-D-AWLAELQQWLKP-GLKVLSIAQAHSLNFSCEQ  168 (312)
T ss_dssp             TTSCCCEEEEEE-EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-S-SHHHHHHTTCCT-TCCEEEEESCSCCCCCTTT
T ss_pred             CcCCccEEEccC-CcccchhHHHHHHhcCCCccEEEccCCCCcch-h-HHHHHHHHhhcC-CCcEEEeeCCCCccchHHH
Confidence            477888888886 22223334443  7788888888888654333 1 222222     4 788888877 666654 56


Q ss_pred             hhcCCCccEEEEEeecCCCc--chhhh--hcCCCccEEEecCccCCc--ceE-ecCCCCCcccEEEecccCcceeeEE-c
Q 039786           73 IFKLKNLIRLGLELSGLAEE--PIRVL--QASPNLLEILLTGTYDYE--LFH-FEAGWFPKLQKLLLWDFIAVKSVII-E  144 (210)
Q Consensus        73 ~~~l~~L~~L~l~~~~l~~~--~~~~l--~~l~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~  144 (210)
                      ++.+++|++|++++|.+...  .+..+  +.+++|++|+++++.-..  .+. .....+++|+.|++.++.-....+. .
T Consensus       169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence            77788888888888875442  12233  677888888887332221  111 0112456777777776543222211 1


Q ss_pred             cCCCCcccEEEeccCCCCCcccccccccccccceeeecchH
Q 039786          145 KGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       145 ~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~~  185 (210)
                      ...+++|++|++++|. ++.+|..+.  ++|++|+++++..
T Consensus       249 ~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             CCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCC
T ss_pred             hhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCC
Confidence            2235677777777776 556666655  6777777777643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.64  E-value=2.4e-16  Score=132.75  Aligned_cols=157  Identities=15%  Similarity=0.083  Sum_probs=73.9

Q ss_pred             HHHHhhcCCCCceEEEEecCcccc-----------------ccccccc--CCccCceEEEeec-cCc-cCChhhhcCCCc
Q 039786           21 LCGLIANLKNLESLTVEMTSKEEI-----------------LDLLSLS--SPPQYLQRLYLTG-NMK-KLPDWIFKLKNL   79 (210)
Q Consensus        21 ~~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~~~~--~~~~~L~~L~l~~-~~~-~~p~~~~~l~~L   79 (210)
                      ++++++++++|++|++++|...+.                 . ...+.  .++ +|++|++.+ .+. .+|..++.+++|
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK-TEDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCT-TCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC-chhhhhcccC-CCCEEEecCCcCCccChHHHhcCCCC
Confidence            445566666666666666544331                 1 12233  444 566666655 333 356556666666


Q ss_pred             cEEEEEeec-CCC-cchhhhhcC------CCccEEEecCccCCcceEe--cCCCCCcccEEEecccCcceeeEEccCCCC
Q 039786           80 IRLGLELSG-LAE-EPIRVLQAS------PNLLEILLTGTYDYELFHF--EAGWFPKLQKLLLWDFIAVKSVIIEKGAVP  149 (210)
Q Consensus        80 ~~L~l~~~~-l~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  149 (210)
                      ++|++++|. ++. ..+..++.+      ++|++|+++++... .++.  ....+++|+.|++.++.....++ ..+.++
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~  353 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI  353 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence            666666665 544 233334443      55666665533222 2332  33445555555555443222333 223334


Q ss_pred             cccEEEeccCCCCCccccccccccc-ccceeeec
Q 039786          150 DIRELRIGPCPLLMEIPIGIEHLKN-LKLLKFAG  182 (210)
Q Consensus       150 ~L~~L~i~~~~~l~~lp~~l~~l~~-L~~l~l~~  182 (210)
                      +|++|++.+|. ++.+|..+..+++ |++|++.+
T Consensus       354 ~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          354 KLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             EESEEECCSSE-EEECCTTSEEECTTCCEEECCS
T ss_pred             CCCEEECCCCc-cccccHhhhhhcccCcEEEccC
Confidence            44444444443 2344444444444 44444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.64  E-value=1.7e-15  Score=122.66  Aligned_cols=174  Identities=18%  Similarity=0.126  Sum_probs=95.0

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIR   81 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~   81 (210)
                      ++|++|++++ +......+..++++++|+.|++++|.. .......+..++ +|++|++.+ .++.+|. .+..+++|++
T Consensus        75 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCcc-CCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCE
Confidence            4677788775 223333355677778888888877543 233334556666 777888777 6666554 4666777777


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      |++++|.+...+...+..+++|++|+++++.....+.. ....+++|+.|++.++. +..++ ....+++|+.|++++|.
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTSC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCCc
Confidence            77777777665555666777777777764333332221 12344555666555443 22221 22334445555554444


Q ss_pred             CCCcccccccccccccceeeec
Q 039786          161 LLMEIPIGIEHLKNLKLLKFAG  182 (210)
Q Consensus       161 ~l~~lp~~l~~l~~L~~l~l~~  182 (210)
                      .....|..+..+++|++|++.+
T Consensus       230 l~~~~~~~~~~l~~L~~L~L~~  251 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSLKKLWVMN  251 (452)
T ss_dssp             CSEECGGGGTTCTTCCEEECTT
T ss_pred             CcccCcccccCccCCCEEEeCC
Confidence            2222233334444444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=7.9e-16  Score=111.19  Aligned_cols=149  Identities=17%  Similarity=0.144  Sum_probs=115.0

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L   79 (210)
                      ++++|+.|++++  .....++ .++.+++|++|++++|.. .  .+..+..++ +|++|++.+ .++. .|..++.+++|
T Consensus        42 ~l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~l~~n~~-~--~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           42 QMNSLTYITLAN--INVTDLT-GIEYAHNIKDLTINNIHA-T--NYNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHTCCEEEEES--SCCSCCT-TGGGCTTCSEEEEESCCC-S--CCGGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hcCCccEEeccC--CCccChH-HHhcCCCCCEEEccCCCC-C--cchhhhcCC-CCCEEEeECCccCcccChhhcCCCCC
Confidence            467899999996  2223334 688999999999999733 2  234566777 999999998 7765 56688899999


Q ss_pred             cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786           80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC  159 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~  159 (210)
                      ++|++++|.++...+..++.+++|++|+++++.....+. ....+++|+.|++.++. +..++ ....+++|++|++.+|
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCc
Confidence            999999999888777889999999999999554223233 45678999999999875 34333 4557899999999998


Q ss_pred             C
Q 039786          160 P  160 (210)
Q Consensus       160 ~  160 (210)
                      +
T Consensus       192 ~  192 (197)
T 4ezg_A          192 T  192 (197)
T ss_dssp             -
T ss_pred             c
Confidence            7

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.63  E-value=4.7e-16  Score=130.06  Aligned_cols=156  Identities=18%  Similarity=0.100  Sum_probs=82.3

Q ss_pred             CCCCCcEEEEEecCCCcch--HHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC--ChhhhcC
Q 039786            2 KLRQLRKLSIRPQNGNGKD--LCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL--PDWIFKL   76 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~--p~~~~~l   76 (210)
                      ++++|++|++++ ......  .+..++.+++|++|++++|.... .....+..++ +|++|++.+ .+...  +.++..+
T Consensus       348 ~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l  424 (606)
T 3t6q_A          348 NLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECP-QLELLDLAFTRLKVKDAQSPFQNL  424 (606)
T ss_dssp             TCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCEE-ECTTTTTTCT-TCSEEECTTCCEECCTTCCTTTTC
T ss_pred             ccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCCc-CCHHHhcCCc-cCCeEECCCCcCCCcccchhhhCc
Confidence            567788888875 221111  14456777788888887754322 2223445555 677777766 44432  2235666


Q ss_pred             CCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcc-eE--ecCCCCCcccEEEecccCcceeeEEccCCCCcccE
Q 039786           77 KNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYEL-FH--FEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRE  153 (210)
Q Consensus        77 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~  153 (210)
                      ++|+.|++++|.+.......++.+++|++|+++++..... +.  .....+++|+.|++.++......+...+.+++|++
T Consensus       425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  504 (606)
T 3t6q_A          425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH  504 (606)
T ss_dssp             TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence            6666666666666555555566666666666663321111 11  11234556666666555322211222334555555


Q ss_pred             EEeccCC
Q 039786          154 LRIGPCP  160 (210)
Q Consensus       154 L~i~~~~  160 (210)
                      |++++|.
T Consensus       505 L~Ls~N~  511 (606)
T 3t6q_A          505 VDLSHNR  511 (606)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            5555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=122.55  Aligned_cols=174  Identities=17%  Similarity=0.158  Sum_probs=121.3

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIR   81 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~   81 (210)
                      ++++.|++++ +......+..++++++|+.|++++|.. ...+...+..++ +|++|++.+ .++.+|. .+..+++|++
T Consensus        64 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCS-CCCCEECTTTTSSCSSCCEEECCSSCC-CEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred             CCCcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCCcC-CccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCce
Confidence            5789999986 333333346789999999999998654 333445677777 999999998 7888765 6788999999


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      |++++|.+...+...+..+++|+.|+++++.....+.. ....+++|+.|++.++. +..++ ....+++|+.|++++|.
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNH  218 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEECTTSC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEECCCCc
Confidence            99999998887777889999999999985443333332 24567788888887764 33333 23456666777776665


Q ss_pred             CCCcc-cccccccccccceeeecc
Q 039786          161 LLMEI-PIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       161 ~l~~l-p~~l~~l~~L~~l~l~~~  183 (210)
                       ++.+ |..+..+++|++|++.++
T Consensus       219 -l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          219 -LSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             -CCEECTTTTTTCTTCCEEECTTC
T ss_pred             -cCccChhhhccCccCCEEECCCC
Confidence             3332 444455555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.63  E-value=5.7e-16  Score=128.53  Aligned_cols=178  Identities=15%  Similarity=0.106  Sum_probs=126.5

Q ss_pred             CCCCCcEEEEEecCCCc--chHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC--hhhhcC
Q 039786            2 KLRQLRKLSIRPQNGNG--KDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP--DWIFKL   76 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p--~~~~~l   76 (210)
                      .+++|++|++++ ....  ...+..+..+++|++|++++|......+  .+..++ +|++|++.+ .+...+  ..+..+
T Consensus       345 ~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l  420 (570)
T 2z63_A          345 DLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS--NFLGLE-QLEHLDFQHSNLKQMSEFSVFLSL  420 (570)
T ss_dssp             BCTTCCEEECCS-SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE--EEETCT-TCCEEECTTSEEESCTTSCTTTTC
T ss_pred             cCCCCCEEeCcC-CccCccccccccccccCccCEEECCCCccccccc--cccccC-CCCEEEccCCccccccchhhhhcC
Confidence            456677777764 1111  1124567778888888888765433222  255666 899999987 666543  367888


Q ss_pred             CCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCC-cceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEE
Q 039786           77 KNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDY-ELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELR  155 (210)
Q Consensus        77 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  155 (210)
                      ++|++|++++|.+.......++++++|+.|+++++... ..++.....+++|+.|++.++......+...+.+++|++|+
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  500 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence            99999999999887766778889999999999855332 33445567789999999998764332244456789999999


Q ss_pred             eccCCCCCccc-ccccccccccceeeecch
Q 039786          156 IGPCPLLMEIP-IGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       156 i~~~~~l~~lp-~~l~~l~~L~~l~l~~~~  184 (210)
                      +.+|. ++.+| ..+..+++|++|++.+++
T Consensus       501 l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          501 MASNQ-LKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence            99997 55554 457889999999999854

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.63  E-value=1.4e-15  Score=127.23  Aligned_cols=85  Identities=19%  Similarity=0.176  Sum_probs=39.0

Q ss_pred             HhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC---ChhhhcCCCccEEEEEeecCCCcchhhhhc
Q 039786           24 LIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL---PDWIFKLKNLIRLGLELSGLAEEPIRVLQA   99 (210)
Q Consensus        24 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~---p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   99 (210)
                      .++.+++|++|++++|......+...+..++ +|++|++.+ .++.+   |..+..+++|++|++++|.+.......++.
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  398 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE  398 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTTTCT-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhhccC-cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence            4444455555555444332222222233344 555555554 33332   334455555555555555544443444445


Q ss_pred             CCCccEEEec
Q 039786          100 SPNLLEILLT  109 (210)
Q Consensus       100 l~~L~~L~l~  109 (210)
                      +++|++|+++
T Consensus       399 l~~L~~L~l~  408 (606)
T 3t6q_A          399 CPQLELLDLA  408 (606)
T ss_dssp             CTTCSEEECT
T ss_pred             CccCCeEECC
Confidence            5555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.63  E-value=7.8e-16  Score=119.14  Aligned_cols=124  Identities=18%  Similarity=0.102  Sum_probs=74.1

Q ss_pred             ceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhh-hcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786           57 LQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVL-QASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW  133 (210)
Q Consensus        57 L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  133 (210)
                      |++|++.+ .++.++ ..++.+++|++|++++|.++...+..+ ..+++|++|+++++... .+ .....+++|+.|++.
T Consensus       122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~-~~~~~l~~L~~L~Ls  199 (317)
T 3o53_A          122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV-KGQVVFAKLKTLDLS  199 (317)
T ss_dssp             CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EE-ECCCCCTTCCEEECC
T ss_pred             CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cc-ccccccccCCEEECC
Confidence            44444443 333332 244556666666666666655444444 35666777776633211 12 122236777777777


Q ss_pred             ccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          134 DFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       134 ~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ++. +..++.....+++|+.|++++|. ++.+|..+..+++|++|++.+++
T Consensus       200 ~N~-l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          200 SNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             SSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             CCc-CCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence            654 44444445567788888888876 66777777788888888888764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.63  E-value=2.3e-16  Score=132.83  Aligned_cols=177  Identities=18%  Similarity=0.104  Sum_probs=107.4

Q ss_pred             CCCCCCcEEEEEecCCCcch-----------------HHHHhh--cCCCCceEEEEecCcccccccccccCCccCceEEE
Q 039786            1 MKLRQLRKLSIRPQNGNGKD-----------------LCGLIA--NLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLY   61 (210)
Q Consensus         1 ~~L~~L~~L~l~~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~   61 (210)
                      +++++|++|++++ +.....                 +++.++  ++++|++|++++|......+ ..+..++ +|++|+
T Consensus       203 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~-~L~~L~  279 (636)
T 4eco_A          203 MRLTKLRQFYMGN-SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALP-EMQLIN  279 (636)
T ss_dssp             GGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCS-SCCEEE
T ss_pred             hcccCCCEEECcC-CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCC-CCCEEE
Confidence            3678899999986 333332                 788888  89999999999876555443 4466666 888888


Q ss_pred             eec-c-Ccc--CChhhhcC------CCccEEEEEeecCCCcch-hhhhcCCCccEEEecCccCCcceEecCCCCCcccEE
Q 039786           62 LTG-N-MKK--LPDWIFKL------KNLIRLGLELSGLAEEPI-RVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKL  130 (210)
Q Consensus        62 l~~-~-~~~--~p~~~~~l------~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  130 (210)
                      +.+ . ++.  +|..++.+      ++|++|++++|.++..+. ..++.+++|++|+++++.....++ ....+++|+.|
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L  358 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL  358 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence            887 4 663  77766665      888888888888763322 267888888888887433221233 33444566666


Q ss_pred             EecccCcceeeEEccCCCCc-ccEEEeccCCCCCcccccccccc--cccceeeecc
Q 039786          131 LLWDFIAVKSVIIEKGAVPD-IRELRIGPCPLLMEIPIGIEHLK--NLKLLKFAGM  183 (210)
Q Consensus       131 ~l~~~~~l~~~~~~~~~~~~-L~~L~i~~~~~l~~lp~~l~~l~--~L~~l~l~~~  183 (210)
                      ++.++. +..++.....+++ |++|++.+|. ++.+|..+..++  +|++|++.++
T Consensus       359 ~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N  412 (636)
T 4eco_A          359 NLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYN  412 (636)
T ss_dssp             ECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSS
T ss_pred             ECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCC
Confidence            665543 2233322333444 5555555555 334444433322  4444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.62  E-value=3e-16  Score=121.24  Aligned_cols=148  Identities=18%  Similarity=0.123  Sum_probs=59.1

Q ss_pred             CCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc---CChhh--hcCCCccEEEEEeecCCCcc---hhhhhc
Q 039786           29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK---LPDWI--FKLKNLIRLGLELSGLAEEP---IRVLQA   99 (210)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~---~p~~~--~~l~~L~~L~l~~~~l~~~~---~~~l~~   99 (210)
                      ++|++|++++|... ......+..++ +|++|++++ .+..   +|..+  +.+++|++|++++|.++..+   ...+..
T Consensus       149 ~~L~~L~L~~N~l~-~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  226 (312)
T 1wwl_A          149 PGLKVLSIAQAHSL-NFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA  226 (312)
T ss_dssp             TTCCEEEEESCSCC-CCCTTTCCCCS-SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred             CCCcEEEeeCCCCc-cchHHHhccCC-CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence            45555555543322 11222333444 455555544 2221   12222  44455555555555544211   112234


Q ss_pred             CCCccEEEecCccCCcceE-ecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccce
Q 039786          100 SPNLLEILLTGTYDYELFH-FEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLL  178 (210)
Q Consensus       100 l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l  178 (210)
                      +++|++|+++++......+ .....+++|+.|++.++. +..++...  .++|++|++++|. ++.+|. +..+++|++|
T Consensus       227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L  301 (312)
T 1wwl_A          227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL--PAKLSVLDLSYNR-LDRNPS-PDELPQVGNL  301 (312)
T ss_dssp             TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSC--CSEEEEEECCSSC-CCSCCC-TTTSCEEEEE
T ss_pred             CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhc--cCCceEEECCCCC-CCCChh-HhhCCCCCEE
Confidence            4555555554221111111 111223455555555433 22222211  1445555555544 344443 4445555555


Q ss_pred             eeecc
Q 039786          179 KFAGM  183 (210)
Q Consensus       179 ~l~~~  183 (210)
                      ++.++
T Consensus       302 ~L~~N  306 (312)
T 1wwl_A          302 SLKGN  306 (312)
T ss_dssp             ECTTC
T ss_pred             eccCC
Confidence            55444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=1.4e-15  Score=127.30  Aligned_cols=89  Identities=19%  Similarity=0.151  Sum_probs=59.7

Q ss_pred             CCCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC-ChhhhcCCC
Q 039786            1 MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKN   78 (210)
Q Consensus         1 ~~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-p~~~~~l~~   78 (210)
                      +++++|++|++++ +......+..++++++|++|++++|... ..+...+..++ +|++|++.+ .++.+ |.+++.+++
T Consensus        96 ~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~  172 (597)
T 3oja_B           96 AYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTS  172 (597)
T ss_dssp             TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             cCCCCCCEEECCC-CcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCc
Confidence            3577888888885 2223333455678888888888876443 33333345566 788888887 66664 446778888


Q ss_pred             ccEEEEEeecCCCc
Q 039786           79 LIRLGLELSGLAEE   92 (210)
Q Consensus        79 L~~L~l~~~~l~~~   92 (210)
                      |++|++++|.++..
T Consensus       173 L~~L~L~~N~l~~~  186 (597)
T 3oja_B          173 LQNLQLSSNRLTHV  186 (597)
T ss_dssp             CCEEECTTSCCSBC
T ss_pred             CcEEECcCCCCCCc
Confidence            88888888876553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.62  E-value=7e-16  Score=121.07  Aligned_cols=177  Identities=12%  Similarity=0.013  Sum_probs=122.9

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh-hhcCCCccE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNLIR   81 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-~~~l~~L~~   81 (210)
                      ++|++|++++ ..........++++++|++|++++|... ......+..++ +|++|++.+ .++.+|.. ++.+++|++
T Consensus        52 ~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred             ccCcEEECCC-CcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence            4788899885 2222222346788899999999886443 33334566666 899999988 77887764 788899999


Q ss_pred             EEEEeecCCCcch-hhhhcCCCccEEEecCccCCcce-EecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786           82 LGLELSGLAEEPI-RVLQASPNLLEILLTGTYDYELF-HFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC  159 (210)
Q Consensus        82 L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~  159 (210)
                      |++++|.++..+. ..++.+++|++|+++++.....+ ......+++|+.|++.++......+...+.+++|++|++.+|
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            9999998876554 46788999999999854222222 223456788888988877533322334556788888888888


Q ss_pred             CCCCcccccc-cccccccceeeecch
Q 039786          160 PLLMEIPIGI-EHLKNLKLLKFAGMV  184 (210)
Q Consensus       160 ~~l~~lp~~l-~~l~~L~~l~l~~~~  184 (210)
                      . ++.+|..+ ..+++|++|++.++.
T Consensus       209 ~-l~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          209 Q-HILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             C-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred             c-cccchhhhhhhcccccEEECCCCc
Confidence            7 56666554 457888888887764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.62  E-value=1.4e-15  Score=116.34  Aligned_cols=167  Identities=21%  Similarity=0.265  Sum_probs=125.5

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      ++++|+.|++++  .....+ +.++.+++|++|++++|......+   +..++ +|++|++.+ .++.+| .+..+++|+
T Consensus        44 ~l~~L~~L~l~~--~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~-~L~~L~l~~n~l~~~~-~l~~l~~L~  115 (291)
T 1h6t_A           44 ELNSIDQIIANN--SDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP---LANLK-NLGWLFLDENKVKDLS-SLKDLKKLK  115 (291)
T ss_dssp             HHHTCCEEECTT--SCCCCC-TTGGGCTTCCEEECCSSCCCCCGG---GTTCT-TCCEEECCSSCCCCGG-GGTTCTTCC
T ss_pred             hcCcccEEEccC--CCcccC-hhHhcCCCCCEEEccCCccCCCcc---cccCC-CCCEEECCCCcCCCCh-hhccCCCCC
Confidence            357899999986  222222 347889999999999875544322   66666 899999998 777776 488899999


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      +|++++|.++..  ..++.+++|+.|+++++.... + .....+++|+.|++.++. +..++. ...+++|+.|++++|.
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCc
Confidence            999999988763  578899999999998443222 2 234567899999998875 333332 5678999999999997


Q ss_pred             CCCcccccccccccccceeeecch
Q 039786          161 LLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       161 ~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                       ++.+|. +..+++|+.|++.+++
T Consensus       190 -i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          190 -ISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             -CCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             -CCCChh-hccCCCCCEEECcCCc
Confidence             677764 7889999999998874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.61  E-value=1.1e-15  Score=119.44  Aligned_cols=171  Identities=18%  Similarity=0.130  Sum_probs=114.8

Q ss_pred             CCCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCc
Q 039786            1 MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNL   79 (210)
Q Consensus         1 ~~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L   79 (210)
                      +++++|++|++++  .....+.. ++.+++|+.|++++|......   .+..++ +|+.|++.+ .+..++. +..+++|
T Consensus       152 ~~l~~L~~L~l~~--~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~---~~~~l~-~L~~L~l~~n~l~~~~~-~~~~~~L  223 (347)
T 4fmz_A          152 SNMTGLNYLTVTE--SKVKDVTP-IANLTDLYSLSLNYNQIEDIS---PLASLT-SLHYFTAYVNQITDITP-VANMTRL  223 (347)
T ss_dssp             TTCTTCCEEECCS--SCCCCCGG-GGGCTTCSEEECTTSCCCCCG---GGGGCT-TCCEEECCSSCCCCCGG-GGGCTTC
T ss_pred             hhCCCCcEEEecC--CCcCCchh-hccCCCCCEEEccCCcccccc---cccCCC-ccceeecccCCCCCCch-hhcCCcC
Confidence            3578899999986  22222222 788899999999886543322   245555 788888887 6666553 6778888


Q ss_pred             cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786           80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC  159 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~  159 (210)
                      ++|++++|.++..+.  +..+++|+.|+++++.... + .....+++|+.|++.++. +..+ .....+++|+.|++.+|
T Consensus       224 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQ-ISDI-SVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS
T ss_pred             CEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCc-cCCC-hhhcCCCCCCEEECcCC
Confidence            888888888766443  7788888888887443222 2 234567788888887764 3333 22445778888888888


Q ss_pred             CCCCcccccccccccccceeeecchH
Q 039786          160 PLLMEIPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       160 ~~l~~lp~~l~~l~~L~~l~l~~~~~  185 (210)
                      ......|..+..+++|++|++++|+.
T Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          298 QLGNEDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             CCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred             cCCCcChhHhhccccCCEEEccCCcc
Confidence            74344555667788888888887753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.1e-15  Score=132.17  Aligned_cols=158  Identities=16%  Similarity=0.129  Sum_probs=95.1

Q ss_pred             HHHHhhcCCCCceEEEEecCcccc-----------------ccccccc--CCccCceEEEeec-cC-ccCChhhhcCCCc
Q 039786           21 LCGLIANLKNLESLTVEMTSKEEI-----------------LDLLSLS--SPPQYLQRLYLTG-NM-KKLPDWIFKLKNL   79 (210)
Q Consensus        21 ~~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~~~~--~~~~~L~~L~l~~-~~-~~~p~~~~~l~~L   79 (210)
                      ++.+++++++|+.|++++|...+.                 .+ ..+.  .++ +|++|++.+ .+ ..+|..++.+++|
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L  517 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPEL  517 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCC
Confidence            556677777777777777655441                 21 2233  555 677777766 33 3477777777777


Q ss_pred             cEEEEEeec-CCC-cchhhhhcC-------CCccEEEecCccCCcceEe--cCCCCCcccEEEecccCcceeeEEccCCC
Q 039786           80 IRLGLELSG-LAE-EPIRVLQAS-------PNLLEILLTGTYDYELFHF--EAGWFPKLQKLLLWDFIAVKSVIIEKGAV  148 (210)
Q Consensus        80 ~~L~l~~~~-l~~-~~~~~l~~l-------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  148 (210)
                      +.|++++|. ++. ..+..++.+       ++|+.|+++++... .++.  ....+++|+.|++.++.. ..++ ..+.+
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~~~~L  594 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV-RHLE-AFGTN  594 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC-CBCC-CCCTT
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc-ccch-hhcCC
Confidence            777777776 654 333333433       47777777633322 3443  345666777777766542 2444 45556


Q ss_pred             CcccEEEeccCCCCCccccccccccc-ccceeeecch
Q 039786          149 PDIRELRIGPCPLLMEIPIGIEHLKN-LKLLKFAGMV  184 (210)
Q Consensus       149 ~~L~~L~i~~~~~l~~lp~~l~~l~~-L~~l~l~~~~  184 (210)
                      ++|+.|++++|. ++.+|..+..+++ |++|++.++.
T Consensus       595 ~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          595 VKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             SEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC
T ss_pred             CcceEEECcCCc-cccchHHHhhccccCCEEECcCCC
Confidence            667777777666 4466666666666 6666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.61  E-value=9.3e-15  Score=108.57  Aligned_cols=177  Identities=18%  Similarity=0.113  Sum_probs=128.9

Q ss_pred             CCCCCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCC
Q 039786            1 MKLRQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKN   78 (210)
Q Consensus         1 ~~L~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~   78 (210)
                      +++++|++|++++ ......++ ..++++++|++|++++|+.....+...+..++ +|++|++.+ .++.+|. +..+++
T Consensus        52 ~~l~~L~~L~l~~-n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~-~L~~L~l~~n~l~~lp~-~~~l~~  128 (239)
T 2xwt_C           52 SNLPNISRIYVSI-DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFNTGLKMFPD-LTKVYS  128 (239)
T ss_dssp             TTCTTCCEEEEEC-CSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT-TCCEEEEEEECCCSCCC-CTTCCB
T ss_pred             cCCCCCcEEeCCC-CCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC-CCCEEeCCCCCCccccc-cccccc
Confidence            3678999999996 22133333 46788999999999984444444445566777 899999988 7888886 777788


Q ss_pred             cc---EEEEEee-cCCCcchhhhhcCCCcc-EEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCC-Ccc
Q 039786           79 LI---RLGLELS-GLAEEPIRVLQASPNLL-EILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAV-PDI  151 (210)
Q Consensus        79 L~---~L~l~~~-~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L  151 (210)
                      |+   +|++++| .++..+...++++++|+ .|+++++... .++......++|+.|++.++..+..++.. ...+ ++|
T Consensus       129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L  207 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP  207 (239)
T ss_dssp             CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred             cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence            87   9999999 78777777788999999 9999743222 23322222268999999887556555433 3456 899


Q ss_pred             cEEEeccCCCCCcccccccccccccceeeecch
Q 039786          152 RELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       152 ~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      +.|++.+|. ++.+|..  .+++|++|++.++.
T Consensus       208 ~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          208 SLLDVSQTS-VTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             SEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred             cEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence            999999987 6777765  78899999987764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=9.1e-16  Score=132.68  Aligned_cols=176  Identities=18%  Similarity=0.065  Sum_probs=106.2

Q ss_pred             CCCCCCcEEEEEecCCCcc-----------------hHHHHhh--cCCCCceEEEEecCcccccccccccCCccCceEEE
Q 039786            1 MKLRQLRKLSIRPQNGNGK-----------------DLCGLIA--NLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLY   61 (210)
Q Consensus         1 ~~L~~L~~L~l~~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~   61 (210)
                      ++|++|+.|++++ +....                 .+++.++  ++++|++|++++|......+ ..+..++ +|++|+
T Consensus       445 ~~L~~L~~L~Ls~-N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~-~L~~L~  521 (876)
T 4ecn_A          445 QRLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLP-ELQSLN  521 (876)
T ss_dssp             GGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCS-SCCEEE
T ss_pred             hcCCCCCEEECcC-CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCC-CCCEEE
Confidence            3577888888885 22222                 2677766  88888888888876544443 4455666 788888


Q ss_pred             eec-c-Ccc--CChhhhcCC-------CccEEEEEeecCCCcch-hhhhcCCCccEEEecCccCCcceEecCCCCCcccE
Q 039786           62 LTG-N-MKK--LPDWIFKLK-------NLIRLGLELSGLAEEPI-RVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQK  129 (210)
Q Consensus        62 l~~-~-~~~--~p~~~~~l~-------~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  129 (210)
                      +.+ . ++.  +|..++.++       +|++|++++|.++..+. ..++.+++|+.|+++++... .++ ....+++|+.
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~  599 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD  599 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence            776 4 553  666555443       77778777777663221 25777777777777733222 333 4555667777


Q ss_pred             EEecccCcceeeEEccCCCCc-ccEEEeccCCCCCcccccccccc--cccceeeecc
Q 039786          130 LLLWDFIAVKSVIIEKGAVPD-IRELRIGPCPLLMEIPIGIEHLK--NLKLLKFAGM  183 (210)
Q Consensus       130 L~l~~~~~l~~~~~~~~~~~~-L~~L~i~~~~~l~~lp~~l~~l~--~L~~l~l~~~  183 (210)
                      |++.++.. ..++.....+++ |+.|++.+|. ++.+|..+..++  +|+.|++.++
T Consensus       600 L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          600 LKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             EECCSSCC-SCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSS
T ss_pred             EECcCCcc-ccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCC
Confidence            77766542 244434445566 6667666666 445555444332  2555555444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.61  E-value=4e-15  Score=116.29  Aligned_cols=169  Identities=14%  Similarity=0.187  Sum_probs=123.9

Q ss_pred             CCCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCc
Q 039786            1 MKLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNL   79 (210)
Q Consensus         1 ~~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L   79 (210)
                      +++++|+.|++++ ...... ...++.+++|++|++++|......   .+..++ +|++|++.+ .+..++. +..+++|
T Consensus       129 ~~l~~L~~L~l~~-n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L  201 (347)
T 4fmz_A          129 ANLTKMYSLNLGA-NHNLSD-LSPLSNMTGLNYLTVTESKVKDVT---PIANLT-DLYSLSLNYNQIEDISP-LASLTSL  201 (347)
T ss_dssp             TTCTTCCEEECTT-CTTCCC-CGGGTTCTTCCEEECCSSCCCCCG---GGGGCT-TCSEEECTTSCCCCCGG-GGGCTTC
T ss_pred             ccCCceeEEECCC-CCCccc-ccchhhCCCCcEEEecCCCcCCch---hhccCC-CCCEEEccCCccccccc-ccCCCcc
Confidence            3678899999985 222222 344788999999999886554332   255566 899999988 7777764 7888999


Q ss_pred             cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786           80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC  159 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~  159 (210)
                      +.|++++|.+.....  ++.+++|+.|+++++.... +. ....+++|+.|++.++. +..+ .....+++|++|++.+|
T Consensus       202 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LS-PLANLSQLTWLEIGTNQ-ISDI-NAVKDLTKLKMLNVGSN  275 (347)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSS
T ss_pred             ceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Cc-chhcCCCCCEEECCCCc-cCCC-hhHhcCCCcCEEEccCC
Confidence            999999998766443  7889999999998543222 11 15678899999998875 3333 23567899999999998


Q ss_pred             CCCCcccccccccccccceeeecch
Q 039786          160 PLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       160 ~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      . ++.++ .+..+++|++|++++|.
T Consensus       276 ~-l~~~~-~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          276 Q-ISDIS-VLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             C-CCCCG-GGGGCTTCSEEECCSSC
T ss_pred             c-cCCCh-hhcCCCCCCEEECcCCc
Confidence            7 66664 57888999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.61  E-value=2.8e-15  Score=116.51  Aligned_cols=175  Identities=22%  Similarity=0.186  Sum_probs=100.0

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L   79 (210)
                      ++++|++|++++ .......+..++++++|++|++++|... ..+.. +  .+ +|++|++.+ .++.++. .+..+++|
T Consensus        74 ~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~--~~-~L~~L~l~~n~l~~~~~~~~~~l~~L  147 (330)
T 1xku_A           74 NLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK-M--PK-TLQELRVHENEITKVRKSVFNGLNQM  147 (330)
T ss_dssp             TCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS-C--CT-TCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             cCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChh-h--cc-cccEEECCCCcccccCHhHhcCCccc
Confidence            466777777764 2222222556677777777777765432 21111 1  12 677777766 5565543 46778888


Q ss_pred             cEEEEEeecCCC--cchhhhhcCCCccEEEecCccCCc--------------------ce-EecCCCCCcccEEEecccC
Q 039786           80 IRLGLELSGLAE--EPIRVLQASPNLLEILLTGTYDYE--------------------LF-HFEAGWFPKLQKLLLWDFI  136 (210)
Q Consensus        80 ~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~--------------------~~-~~~~~~~~~L~~L~l~~~~  136 (210)
                      +.|++++|.+..  .....++.+++|++|+++++....                    .+ ......+++|+.|++.++.
T Consensus       148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  227 (330)
T 1xku_A          148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS  227 (330)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred             cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            888888887654  334566777777777776322110                    00 0112334555666665543


Q ss_pred             cceeeEE-ccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          137 AVKSVII-EKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       137 ~l~~~~~-~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                       +..++. ....+++|++|++++|. ++.+|.++..+++|++|++.++.
T Consensus       228 -l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          228 -ISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             -CCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred             -CceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence             222221 23345677777777775 55667777777777777777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=2.6e-15  Score=122.68  Aligned_cols=124  Identities=18%  Similarity=0.121  Sum_probs=71.4

Q ss_pred             ceEEEeec-cCccC-ChhhhcCCCccEEEEEeecCCCcchhhhh-cCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786           57 LQRLYLTG-NMKKL-PDWIFKLKNLIRLGLELSGLAEEPIRVLQ-ASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW  133 (210)
Q Consensus        57 L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  133 (210)
                      |+.|++.+ .++.+ |..++.+++|++|++++|.++..++..+. .+++|+.|+++++.... + .....+++|+.|+++
T Consensus       122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~-~~~~~l~~L~~L~Ls  199 (487)
T 3oja_A          122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-V-KGQVVFAKLKTLDLS  199 (487)
T ss_dssp             CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-E-ECCCCCTTCCEEECC
T ss_pred             CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-c-cccccCCCCCEEECC
Confidence            44444443 33332 33445566666666666665554444443 56666666666332111 1 122235677777776


Q ss_pred             ccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          134 DFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       134 ~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ++. +..++.....+++|+.|++++|. ++.+|..+..+++|+.+++.+++
T Consensus       200 ~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          200 SNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             SSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             CCC-CCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence            654 34444445566777777777776 56677777777788888887754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.59  E-value=2.4e-15  Score=112.59  Aligned_cols=171  Identities=19%  Similarity=0.199  Sum_probs=120.0

Q ss_pred             CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccEE
Q 039786            5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRL   82 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L   82 (210)
                      +.+.+++++  .....++..+.  ++++.|+++++.... .....+..++ +|++|++.+ .++.++ ..+..+++|++|
T Consensus        15 ~~~~l~~~~--~~l~~~p~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           15 GKKEVDCQG--KSLDSVPSGIP--ADTEKLDLQSTGLAT-LSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGTEEECTT--CCCSSCCSCCC--TTCCEEECTTSCCCC-CCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCeEEecCC--CCccccCCCCC--CCCCEEEccCCCcCc-cCHhHhcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence            355666654  33334444333  588999998865433 3334566676 899999988 777654 457888999999


Q ss_pred             EEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-CCCCCcccEEEecccCcceeeEE-ccCCCCcccEEEeccCC
Q 039786           83 GLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-AGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCP  160 (210)
Q Consensus        83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~  160 (210)
                      ++++|.++..+...++.+++|++|+++++... .+... ...+++|+.|++.++. +..++. ..+.+++|++|++.+|.
T Consensus        89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc
Confidence            99999988777777889999999999844322 22222 3567899999998764 444443 34567899999999987


Q ss_pred             CCCcccc-cccccccccceeeecch
Q 039786          161 LLMEIPI-GIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       161 ~l~~lp~-~l~~l~~L~~l~l~~~~  184 (210)
                       ++.+|. .+..+++|++|++.+++
T Consensus       167 -l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          167 -LQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             -CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             -CCccCHHHHhCCCCCCEEEeeCCc
Confidence             555554 56788999999998854

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.59  E-value=3.8e-15  Score=120.45  Aligned_cols=34  Identities=26%  Similarity=0.466  Sum_probs=14.8

Q ss_pred             CceEEEeec-cCccC-Chh-hhcCCCccEEEEEeecC
Q 039786           56 YLQRLYLTG-NMKKL-PDW-IFKLKNLIRLGLELSGL   89 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~-p~~-~~~l~~L~~L~l~~~~l   89 (210)
                      +|++|++.+ .++.+ |.. +..+++|++|++++|.+
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            444444444 33332 222 34444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.58  E-value=2.9e-15  Score=116.56  Aligned_cols=59  Identities=24%  Similarity=0.344  Sum_probs=35.2

Q ss_pred             CCcccEEEecccCcceeeEE-ccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          124 FPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       124 ~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      +++|+.|++.++. +..++. ....+++|+.|++.+|. ++.+|.++..+++|++|++.++.
T Consensus       216 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          216 YSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC
Confidence            3455555555433 222221 23346777777777776 56777777777777777777754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=3.5e-16  Score=121.80  Aligned_cols=179  Identities=17%  Similarity=0.208  Sum_probs=128.2

Q ss_pred             CCCCCcEEEEEecCCCc-chHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCcc--CChhhhcC
Q 039786            2 KLRQLRKLSIRPQNGNG-KDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKK--LPDWIFKL   76 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~--~p~~~~~l   76 (210)
                      ++++|++|++++ .... ..++..++.+++|++|++++|... ......+..++ +|++|++.+  .++.  ++..+..+
T Consensus        91 ~~~~L~~L~L~~-~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~-~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           91 SPFRVQHMDLSN-SVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             CCBCCCEEECTT-CEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             cCCCCCEEEccC-CCcCHHHHHHHHhhCCCCCEEeCcCcccC-HHHHHHHhcCC-CCCEEECCCCCCCCHHHHHHHHhcC
Confidence            468899999985 2222 337788899999999999987532 22234456666 899999987  3553  66667889


Q ss_pred             CCccEEEEEee-cCCCcc-hhhhhcCC-CccEEEecCcc--CC-cceEecCCCCCcccEEEecccCcce-eeEEccCCCC
Q 039786           77 KNLIRLGLELS-GLAEEP-IRVLQASP-NLLEILLTGTY--DY-ELFHFEAGWFPKLQKLLLWDFIAVK-SVIIEKGAVP  149 (210)
Q Consensus        77 ~~L~~L~l~~~-~l~~~~-~~~l~~l~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~  149 (210)
                      ++|++|++++| .++... ...+..++ +|++|+++++.  .. ..+......+++|+.|++.+|..+. ..+.....++
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~  247 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  247 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence            99999999999 787653 45577899 99999998552  11 2233334568899999999887433 2233445689


Q ss_pred             cccEEEeccCCCCCc-ccccccccccccceeeecc
Q 039786          150 DIRELRIGPCPLLME-IPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       150 ~L~~L~i~~~~~l~~-lp~~l~~l~~L~~l~l~~~  183 (210)
                      +|++|++.+|..... ....+..+++|++|++.+|
T Consensus       248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            999999999973321 1124678899999999987

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.57  E-value=3.4e-15  Score=124.81  Aligned_cols=167  Identities=22%  Similarity=0.276  Sum_probs=122.3

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      +|++|+.|++++  .....+ +.++.+++|+.|++++|......+   +..++ +|++|+|.+ .++.+| .+..+++|+
T Consensus        41 ~L~~L~~L~l~~--n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~-~L~~L~Ls~N~l~~l~-~l~~l~~L~  112 (605)
T 1m9s_A           41 ELNSIDQIIANN--SDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP---LTNLK-NLGWLFLDENKIKDLS-SLKDLKKLK  112 (605)
T ss_dssp             HHTTCCCCBCTT--CCCCCC-TTGGGCTTCCEEECTTSCCCCCGG---GGGCT-TCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred             cCCCCCEEECcC--CCCCCC-hHHccCCCCCEEEeeCCCCCCChh---hccCC-CCCEEECcCCCCCCCh-hhccCCCCC
Confidence            367888888875  222222 357889999999998865544322   56666 899999988 777776 678889999


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      .|++++|.+..  +..++.+++|+.|+|+++.... + .....+++|+.|++.++.. ..++. ...+++|+.|++++|.
T Consensus       113 ~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          113 SLSLEHNGISD--INGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCCC--CccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcC-CCchh-hccCCCCCEEECcCCC
Confidence            99999998776  3568889999999998443222 2 3445678999999987753 33322 5678899999999887


Q ss_pred             CCCcccccccccccccceeeecch
Q 039786          161 LLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       161 ~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                       ++.+| .+..+++|+.|++.+++
T Consensus       187 -i~~l~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          187 -ISDLR-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             -CCBCG-GGTTCTTCSEEECCSEE
T ss_pred             -CCCCh-HHccCCCCCEEEccCCc
Confidence             66664 57888999999998864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.57  E-value=9.5e-15  Score=110.52  Aligned_cols=173  Identities=22%  Similarity=0.183  Sum_probs=126.8

Q ss_pred             CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh-hhcCCCccEE
Q 039786            5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNLIRL   82 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-~~~l~~L~~L   82 (210)
                      +.+.+++++  .....++..+.  +++++|+++++... ..+...+..++ +|++|++.+ .++.+|.. +..+++|++|
T Consensus        17 ~~~~l~~~~--~~l~~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           17 NKNSVDCSS--KKLTAIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTEEECTT--SCCSSCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCEEEccC--CCCCccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            466777764  22333443332  68999999986543 33334577777 999999998 78887764 4789999999


Q ss_pred             EEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEeccCCC
Q 039786           83 GLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCPL  161 (210)
Q Consensus        83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~~  161 (210)
                      ++++|.++..+...+..+++|++|+++++............+++|+.|++.++. +..++.. .+.+++|++|++.+|. 
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-  168 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ-  168 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCc-
Confidence            999999988777788999999999998443222222224567999999999875 4444433 3568999999999998 


Q ss_pred             CCcccc-cccccccccceeeecchH
Q 039786          162 LMEIPI-GIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       162 l~~lp~-~l~~l~~L~~l~l~~~~~  185 (210)
                      ++.+|. .+..+++|++|+++++..
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEeChhHhccCCCcCEEECCCCcC
Confidence            566655 468899999999998743

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.57  E-value=1.4e-14  Score=112.60  Aligned_cols=175  Identities=17%  Similarity=0.148  Sum_probs=113.0

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRL   82 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L   82 (210)
                      ++|++|++++ ..........++++++|++|++++|... ......+..++ +|++|++.+ .++.+|..+.  ++|++|
T Consensus        52 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~--~~L~~L  126 (330)
T 1xku_A           52 PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLV-KLERLYLSKNQLKELPEKMP--KTLQEL  126 (330)
T ss_dssp             TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC--TTCCEE
T ss_pred             CCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCC-CCCEEECCCCcCCccChhhc--ccccEE
Confidence            5788899886 2222222346889999999999986543 33335567777 899999988 7888886544  799999


Q ss_pred             EEEeecCCCcchhhhhcCCCccEEEecCccCCc--ceEecCCCCCcccEEEecccCc--------------------cee
Q 039786           83 GLELSGLAEEPIRVLQASPNLLEILLTGTYDYE--LFHFEAGWFPKLQKLLLWDFIA--------------------VKS  140 (210)
Q Consensus        83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~--------------------l~~  140 (210)
                      ++++|.++..+...++.+++|+.|+++.+....  ........+++|+.|++.++.-                    +..
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK  206 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCc
Confidence            999999888777788999999999998432211  1111223345555555554321                    111


Q ss_pred             e-EEccCCCCcccEEEeccCCCCCccc-ccccccccccceeeecch
Q 039786          141 V-IIEKGAVPDIRELRIGPCPLLMEIP-IGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       141 ~-~~~~~~~~~L~~L~i~~~~~l~~lp-~~l~~l~~L~~l~l~~~~  184 (210)
                      + +.....+++|+.|++.+|. ++.++ ..+..+++|++|++.++.
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC
T ss_pred             cCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc
Confidence            1 1123345666777776666 33333 345666777777776664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.57  E-value=2.7e-15  Score=113.82  Aligned_cols=176  Identities=16%  Similarity=0.062  Sum_probs=122.6

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIR   81 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~   81 (210)
                      ++|++|++++ .......+..++++++|++|++++|.. ...+...+..++ +|++|++.+ .++.++ ..+..+++|++
T Consensus        28 ~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCC-CEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCC-CcccccCHhHhccccCCcEEECCCCcC-CccCHHHccCCc-CCCEEECCCCccCccChhhhcCCccccE
Confidence            3589999985 222222234778899999999988644 333334566676 899999988 677654 57788999999


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCcc-CCcceEecCCCCCcccEEEecccCcceeeEE-ccCCCCccc----EEE
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTY-DYELFHFEAGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIR----ELR  155 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~----~L~  155 (210)
                      |++.+|.+...+...++.+++|++|+++++. ....++.....+++|+.|++.++. +..++. ....+++|+    .|+
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~  183 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLD  183 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEE
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeee
Confidence            9999998877665568899999999998432 221233345667899999998765 333321 122334444    788


Q ss_pred             eccCCCCCcccccccccccccceeeecch
Q 039786          156 IGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       156 i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      +++|. ++.++.......+|++|++.++.
T Consensus       184 ls~n~-l~~~~~~~~~~~~L~~L~L~~n~  211 (276)
T 2z62_A          184 LSLNP-MNFIQPGAFKEIRLKELALDTNQ  211 (276)
T ss_dssp             CCSSC-CCEECTTSSCSCCEEEEECCSSC
T ss_pred             cCCCc-ccccCccccCCCcccEEECCCCc
Confidence            88887 66677666566689999998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.56  E-value=3.9e-15  Score=129.13  Aligned_cols=179  Identities=17%  Similarity=0.161  Sum_probs=124.7

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCcc
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNLI   80 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L~   80 (210)
                      .++|++|++++ +......+..++++++|++|++++|......+...+..++ +|++|++++ .+.. .|.+++.+++|+
T Consensus        23 p~~l~~LdLs~-N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~  100 (844)
T 3j0a_A           23 LNTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLF  100 (844)
T ss_dssp             CTTCCEEEEES-CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred             CCCcCEEECCC-CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcccC
Confidence            36899999996 3333444667889999999999987665555556677787 899999988 6776 477889999999


Q ss_pred             EEEEEeecCCCcchh--hhhcCCCccEEEecCccCCcc-eEecCCCCCcccEEEecccCcceeeEEccCCC--CcccEEE
Q 039786           81 RLGLELSGLAEEPIR--VLQASPNLLEILLTGTYDYEL-FHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAV--PDIRELR  155 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~--~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~L~~L~  155 (210)
                      +|++++|.++...+.  .++.+++|++|+++.+..... .......+++|+.|++.++......+...+.+  ++|+.|+
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            999999988764333  378899999999984432221 12234678899999988764322111122223  6788888


Q ss_pred             eccCCCCCccccccccccc------ccceeeecc
Q 039786          156 IGPCPLLMEIPIGIEHLKN------LKLLKFAGM  183 (210)
Q Consensus       156 i~~~~~l~~lp~~l~~l~~------L~~l~l~~~  183 (210)
                      +..|......|..+..+++      |++|++.++
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  214 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN  214 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCC
Confidence            8887754555555555544      788888776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.56  E-value=1.5e-14  Score=111.53  Aligned_cols=83  Identities=18%  Similarity=0.084  Sum_probs=34.6

Q ss_pred             CCCcEEEEEecCCCcchHHHHh--hcCCCCceEEEEecCcccccc---cccccCCccCceEEEeec-cCccCC-hhhhcC
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLI--ANLKNLESLTVEMTSKEEILD---LLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKL   76 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l   76 (210)
                      ++|++|++++ .......+..+  +.+++|++|++++|.......   ...+..++ +|++|++.+ .+..++ ..++.+
T Consensus        91 ~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           91 SRLKELTLED-LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP-GLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             SCCCEEEEES-CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS-CCCEEEEECCSSCCCCTTSCCCC
T ss_pred             CceeEEEeeC-CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc-CCCEEEeeCCCcchhhHHHhccC
Confidence            3455555553 22222223333  445555555555543322111   01112233 455555554 444322 344445


Q ss_pred             CCccEEEEEeec
Q 039786           77 KNLIRLGLELSG   88 (210)
Q Consensus        77 ~~L~~L~l~~~~   88 (210)
                      ++|++|++++|.
T Consensus       169 ~~L~~L~Ls~N~  180 (310)
T 4glp_A          169 PALTSLDLSDNP  180 (310)
T ss_dssp             TTCCEEECCSCT
T ss_pred             CCCCEEECCCCC
Confidence            555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.56  E-value=1.8e-14  Score=116.84  Aligned_cols=160  Identities=18%  Similarity=0.162  Sum_probs=98.4

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      ++++|++|++++  .....++ .++.+++|++|++++|..... +   +..++ +|++|++.+ .++.+|  ++.+++|+
T Consensus        40 ~l~~L~~L~Ls~--n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~-~L~~L~Ls~N~l~~~~--~~~l~~L~  109 (457)
T 3bz5_A           40 QLATLTSLDCHN--SSITDMT-GIEKLTGLTKLICTSNNITTL-D---LSQNT-NLTYLACDSNKLTNLD--VTPLTKLT  109 (457)
T ss_dssp             HHTTCCEEECCS--SCCCCCT-TGGGCTTCSEEECCSSCCSCC-C---CTTCT-TCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred             HcCCCCEEEccC--CCcccCh-hhcccCCCCEEEccCCcCCeE-c---cccCC-CCCEEECcCCCCceee--cCCCCcCC
Confidence            467889999886  2222233 678888999999988654332 2   45555 788888887 677665  67788888


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      +|++++|.++..+   ++.+++|++|+++.+.-.. +  ....+++|+.|++.++..+..+  ..+.+++|++|++.+|.
T Consensus       110 ~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          110 YLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             EEECCSSCCSCCC---CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCeec---CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            8888888776642   6777888888887332111 1  2445666667766665444433  23345555566555554


Q ss_pred             CCCcccccccccccccceeeec
Q 039786          161 LLMEIPIGIEHLKNLKLLKFAG  182 (210)
Q Consensus       161 ~l~~lp~~l~~l~~L~~l~l~~  182 (210)
                       ++.+|  +..+++|++|++.+
T Consensus       182 -l~~l~--l~~l~~L~~L~l~~  200 (457)
T 3bz5_A          182 -ITELD--VSQNKLLNRLNCDT  200 (457)
T ss_dssp             -CCCCC--CTTCTTCCEEECCS
T ss_pred             -cceec--cccCCCCCEEECcC
Confidence             34343  33444444444444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.56  E-value=1.1e-14  Score=110.21  Aligned_cols=167  Identities=23%  Similarity=0.180  Sum_probs=121.8

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L   79 (210)
                      ++++|++|++++ +. ... .+.++++++|++|++++|... ..+...+..++ +|++|++.+ .++.++. .++.+++|
T Consensus        61 ~l~~L~~L~l~~-n~-l~~-~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L  135 (272)
T 3rfs_A           61 YLPNVRYLALGG-NK-LHD-ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLT-NLKELVLVENQLQSLPDGVFDKLTNL  135 (272)
T ss_dssp             GCTTCCEEECTT-SC-CCC-CGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cCCCCcEEECCC-CC-CCC-chhhcCCCCCCEEECCCCccC-ccChhHhcCCc-CCCEEECCCCcCCccCHHHhccCCCC
Confidence            578999999986 22 222 247889999999999987543 33334456676 899999998 7887654 57889999


Q ss_pred             cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEecc
Q 039786           80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGP  158 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~  158 (210)
                      ++|++++|.++..+...++.+++|+.|+++++.-..........+++|+.|++.++. +..++.. .+.+++|+.|++.+
T Consensus       136 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccC
Confidence            999999999988777778999999999998553222222223567899999999875 3444333 45789999999999


Q ss_pred             CCCCCcccccccccccccceeee
Q 039786          159 CPLLMEIPIGIEHLKNLKLLKFA  181 (210)
Q Consensus       159 ~~~l~~lp~~l~~l~~L~~l~l~  181 (210)
                      |+...       .+++++.+++.
T Consensus       215 N~~~~-------~~~~l~~l~~~  230 (272)
T 3rfs_A          215 NPWDC-------TCPGIRYLSEW  230 (272)
T ss_dssp             SCBCC-------CTTTTHHHHHH
T ss_pred             CCccc-------cCcHHHHHHHH
Confidence            97332       24455555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.56  E-value=1.6e-14  Score=118.72  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=68.5

Q ss_pred             CceEEEeec-cCcc-CChhhhcCCCccEEEEEeecCCCcc--hhhhhcCCCccEEEecCccCCcceEe-cCCCC------
Q 039786           56 YLQRLYLTG-NMKK-LPDWIFKLKNLIRLGLELSGLAEEP--IRVLQASPNLLEILLTGTYDYELFHF-EAGWF------  124 (210)
Q Consensus        56 ~L~~L~l~~-~~~~-~p~~~~~l~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~------  124 (210)
                      +|++|++++ .++. +|.+++.+++|+.|++++|.++..+  +..++.+++|++|+++++.....++. ....+      
T Consensus       325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L  404 (520)
T 2z7x_B          325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL  404 (520)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred             cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence            556666655 4444 4555555556666666655554421  23355555556555552221110111 11222      


Q ss_pred             ----------------CcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCccccc-ccccccccceeeecch
Q 039786          125 ----------------PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGMV  184 (210)
Q Consensus       125 ----------------~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~~  184 (210)
                                      ++|+.|++.++. +..++.....+++|++|++.+|. ++.+|.. +..+++|+++++.+++
T Consensus       405 ~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          405 NMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             ECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence                            456666665543 33444444466777777777776 5667765 6677778888777753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.56  E-value=6.9e-15  Score=121.61  Aligned_cols=153  Identities=15%  Similarity=0.132  Sum_probs=94.6

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIR   81 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~   81 (210)
                      ++|++|++++ .......+..++++++|++|++++|... ......+..++ +|++|++++ .++.++. +++.+++|++
T Consensus        26 ~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSF-NKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCS-SCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred             CCccEEECcC-CccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcE
Confidence            4788888885 2233333456788888888888876443 33334566666 888888887 6777554 4788888888


Q ss_pred             EEEEeecCCCcc-hhhhhcCCCccEEEecCccCCcceE-ecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccC
Q 039786           82 LGLELSGLAEEP-IRVLQASPNLLEILLTGTYDYELFH-FEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPC  159 (210)
Q Consensus        82 L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~  159 (210)
                      |++++|.++..+ +..++.+++|++|+++++.....++ .....+++|+.|++.++......+...+.+++|++|++..|
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            888888876532 3467788888888887443222222 23455677788877765532222222233344444444433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.56  E-value=2.4e-14  Score=116.32  Aligned_cols=51  Identities=27%  Similarity=0.345  Sum_probs=24.1

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      +|++|++.+ .++.++ .+..+++|++|++++|.+...+  .++.+++|+.|+++
T Consensus       222 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~  273 (466)
T 1o6v_A          222 NLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLG  273 (466)
T ss_dssp             TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccch--hhhcCCCCCEEECC
Confidence            455555544 333333 3444555555555555443322  14455555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.55  E-value=3.2e-14  Score=115.59  Aligned_cols=120  Identities=18%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD  134 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  134 (210)
                      +|++|++.+ .++.++. +..+++|+.|++++|.+...+  .++.+++|+.|+++++......  ....+++|+.|++.+
T Consensus       266 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYN  340 (466)
T ss_dssp             TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCS
T ss_pred             CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCch--hhccCccCCEeECCC
Confidence            455555554 4444432 445555555555555544422  2455566666666533211111  133456666666665


Q ss_pred             cCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          135 FIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       135 ~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      +. +..+ .....+++|+.|++.+|. ++..+. +..+++|++|++.+++
T Consensus       341 n~-l~~~-~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          341 NK-VSDV-SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA  386 (466)
T ss_dssp             SC-CCCC-GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred             Cc-cCCc-hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence            53 2222 233456667777776666 333332 5666677777766653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.55  E-value=7.1e-15  Score=112.42  Aligned_cols=174  Identities=21%  Similarity=0.131  Sum_probs=128.9

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      ++++++.+++++  .....++..+.  ++++.|++++|... ......+..++ +|++|++.+ .++.++.. +.+++|+
T Consensus         8 ~l~~l~~l~~~~--~~l~~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~~l~~L~   80 (290)
T 1p9a_G            8 KVASHLEVNCDK--RNLTALPPDLP--KDTTILHLSENLLY-TFSLATLMPYT-RLTQLNLDRAELTKLQVD-GTLPVLG   80 (290)
T ss_dssp             CSTTCCEEECTT--SCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCT-TCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred             ccCCccEEECCC--CCCCcCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCC-CCCEEECCCCccCcccCC-CCCCcCC
Confidence            578899999875  33344444332  68999999986543 33345577777 999999998 77777644 7889999


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEeccC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPC  159 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~  159 (210)
                      +|++++|.++..+ ..+..+++|++|+++++............+++|+.|++.++. +..++.. ...+++|+.|++.+|
T Consensus        81 ~L~Ls~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCCSSCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCcCc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC
Confidence            9999999987543 456889999999998443222222335677899999999875 4444433 346789999999999


Q ss_pred             CCCCcccccc-cccccccceeeecchH
Q 039786          160 PLLMEIPIGI-EHLKNLKLLKFAGMVK  185 (210)
Q Consensus       160 ~~l~~lp~~l-~~l~~L~~l~l~~~~~  185 (210)
                      . ++.+|.++ ..+++|++|++.++..
T Consensus       159 ~-l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          159 N-LTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             C-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             c-CCccCHHHhcCcCCCCEEECCCCcC
Confidence            8 77777765 7799999999998753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.54  E-value=5.9e-15  Score=122.43  Aligned_cols=158  Identities=18%  Similarity=0.097  Sum_probs=99.6

Q ss_pred             hcCCCCceEEEEecCcccccc-cccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcch-hhhhcCCC
Q 039786           26 ANLKNLESLTVEMTSKEEILD-LLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPI-RVLQASPN  102 (210)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~  102 (210)
                      +.+++|+.|++++|....... ...+..++ +|++|++.+ .+..+|..+..+++|++|++++|.+..... ..+..+++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCS-CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccC-ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            445566666665543322110 12233444 677777766 555555456667777777777776555432 35667788


Q ss_pred             ccEEEecCccCCcceEecCCCCCcccEEEecccCcc-eeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeee
Q 039786          103 LLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAV-KSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFA  181 (210)
Q Consensus       103 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~  181 (210)
                      |++|+++++......+.....+++|+.|++.++... ..++.....+++|+.|++.+|......|..+..+++|++|+++
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence            888888744322222233456788888888887643 2345455678899999999888433447778889999999998


Q ss_pred             cch
Q 039786          182 GMV  184 (210)
Q Consensus       182 ~~~  184 (210)
                      ++.
T Consensus       503 ~n~  505 (570)
T 2z63_A          503 SNQ  505 (570)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.52  E-value=3.5e-14  Score=106.27  Aligned_cols=152  Identities=18%  Similarity=0.119  Sum_probs=115.0

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIR   81 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~   81 (210)
                      ++|++|++++ .......+..++++++|++|++++|.... .....+..++ +|++|++.+ .++.+| ..+..+++|++
T Consensus        35 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           35 ADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDK  111 (251)
T ss_dssp             TTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEccC-CCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCC-cCCEEECCCCcccccChhHhcccCCCCE
Confidence            5789999986 33333334568899999999999865433 3334566777 999999998 788766 46788999999


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEecccCcceeeEE-ccCCCCcccEEEeccC
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPC  159 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~  159 (210)
                      |++++|.++..+...++.+++|+.|+++++... .+.. ....+++|+.|++.++. +..++. ....+++|+.|++.+|
T Consensus       112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence            999999998877777899999999999844322 2222 34567899999999875 344433 3456899999999999


Q ss_pred             C
Q 039786          160 P  160 (210)
Q Consensus       160 ~  160 (210)
                      +
T Consensus       190 ~  190 (251)
T 3m19_A          190 Q  190 (251)
T ss_dssp             C
T ss_pred             c
Confidence            8

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.52  E-value=4.4e-15  Score=114.58  Aligned_cols=152  Identities=16%  Similarity=0.073  Sum_probs=68.4

Q ss_pred             hcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc---C--ChhhhcCCCccEEEEEeecCCCcchh---h
Q 039786           26 ANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK---L--PDWIFKLKNLIRLGLELSGLAEEPIR---V   96 (210)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~---~--p~~~~~l~~L~~L~l~~~~l~~~~~~---~   96 (210)
                      ..+++|++|++++|... ......+..++ +|++|++++ .+..   +  +.+++.+++|++|++++|.++..+..   .
T Consensus       142 ~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l  219 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSP-AFSCEQVRAFP-ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL  219 (310)
T ss_dssp             TBCSCCCEEEEECCSSC-CCCTTSCCCCT-TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcc-hhhHHHhccCC-CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence            34556666666554332 22223344444 566666655 3321   1  12234555666666666655432211   2


Q ss_pred             hhcCCCccEEEecCccCCcceEecCCCC---CcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccc
Q 039786           97 LQASPNLLEILLTGTYDYELFHFEAGWF---PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLK  173 (210)
Q Consensus        97 l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~  173 (210)
                      ++.+++|++|+++++.-....+.....+   ++|+.|++.++. +..++..  .+++|+.|++++|. ++.+|. +..++
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~--~~~~L~~L~Ls~N~-l~~~~~-~~~l~  294 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG--LPAKLRVLDLSSNR-LNRAPQ-PDELP  294 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC--CCSCCSCEECCSCC-CCSCCC-TTSCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh--hcCCCCEEECCCCc-CCCCch-hhhCC
Confidence            3455666666665222111111111222   455666655443 2233221  13556666666555 444433 34555


Q ss_pred             cccceeeecch
Q 039786          174 NLKLLKFAGMV  184 (210)
Q Consensus       174 ~L~~l~l~~~~  184 (210)
                      +|++|++.+++
T Consensus       295 ~L~~L~L~~N~  305 (310)
T 4glp_A          295 EVDNLTLDGNP  305 (310)
T ss_dssp             CCSCEECSSTT
T ss_pred             CccEEECcCCC
Confidence            66666655543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.52  E-value=3.2e-14  Score=110.65  Aligned_cols=174  Identities=16%  Similarity=0.124  Sum_probs=107.8

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRL   82 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L   82 (210)
                      ++|++|++++ .......+..++++++|++|++++|... ......+..++ +|++|++.+ .++.+|..+.  ++|++|
T Consensus        54 ~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~--~~L~~L  128 (332)
T 2ft3_A           54 PDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLR-KLQKLYISKNHLVEIPPNLP--SSLVEL  128 (332)
T ss_dssp             TTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCT-TCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred             CCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcC-CCCEEECCCCcCCccCcccc--ccCCEE
Confidence            4677788775 2222222456778888888888875443 33234566666 788888877 6777775443  788888


Q ss_pred             EEEeecCCCcchhhhhcCCCccEEEecCccCCc--ceEecC--------------------CCCCcccEEEecccCccee
Q 039786           83 GLELSGLAEEPIRVLQASPNLLEILLTGTYDYE--LFHFEA--------------------GWFPKLQKLLLWDFIAVKS  140 (210)
Q Consensus        83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~--------------------~~~~~L~~L~l~~~~~l~~  140 (210)
                      ++++|.+...+...++.+++|+.|+++++....  ......                    ..+++|+.|++.++. +..
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~  207 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQA  207 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCC
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc-CCc
Confidence            888887776666667788888888887332110  000011                    112456666665543 222


Q ss_pred             eE-EccCCCCcccEEEeccCCCCCccc-ccccccccccceeeecch
Q 039786          141 VI-IEKGAVPDIRELRIGPCPLLMEIP-IGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       141 ~~-~~~~~~~~L~~L~i~~~~~l~~lp-~~l~~l~~L~~l~l~~~~  184 (210)
                      .+ .....+++|+.|++.+|. ++.++ ..+..+++|++|++.++.
T Consensus       208 ~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          208 IELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             CCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             cCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc
Confidence            22 234457788888888887 44444 356788888888888864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.51  E-value=1.6e-13  Score=112.73  Aligned_cols=99  Identities=20%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc--CChhhhcCCC
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK--LPDWIFKLKN   78 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~--~p~~~~~l~~   78 (210)
                      ++++|++|++++ +......+..++++++|++|++++|... ..+  .. .++ +|++|++++ .++.  +|..++.+++
T Consensus        43 ~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp--~~-~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~  116 (520)
T 2z7x_B           43 SLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHNKLV-KIS--CH-PTV-NLKHLDLSFNAFDALPICKEFGNMSQ  116 (520)
T ss_dssp             TCTTCCEEECCS-SCCCEEEGGGGTTCTTCCEEECCSSCCC-EEE--CC-CCC-CCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred             ccccccEEecCC-CccCCcChHHhhcccCCCEEecCCCcee-ecC--cc-ccC-CccEEeccCCccccccchhhhccCCc
Confidence            567777777775 2333333566777778888888775443 222  11 445 788888877 6664  5677888888


Q ss_pred             ccEEEEEeecCCCcchhhhhcCCCc--cEEEec
Q 039786           79 LIRLGLELSGLAEEPIRVLQASPNL--LEILLT  109 (210)
Q Consensus        79 L~~L~l~~~~l~~~~~~~l~~l~~L--~~L~l~  109 (210)
                      |++|++++|.++..   .++.+++|  +.|+++
T Consensus       117 L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B          117 LKFLGLSTTHLEKS---SVLPIAHLNISKVLLV  146 (520)
T ss_dssp             CCEEEEEESSCCGG---GGGGGTTSCEEEEEEE
T ss_pred             ceEEEecCcccchh---hccccccceeeEEEee
Confidence            88888888876552   23344444  555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.51  E-value=8.8e-14  Score=112.82  Aligned_cols=163  Identities=18%  Similarity=0.125  Sum_probs=96.5

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      ++++|++|++++  .....++  ++.+++|++|++++|..... +   +..++ +|++|++.+ .++.+|  ++.+++|+
T Consensus        62 ~l~~L~~L~Ls~--n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~-~L~~L~L~~N~l~~l~--~~~l~~L~  130 (457)
T 3bz5_A           62 KLTGLTKLICTS--NNITTLD--LSQNTNLTYLACDSNKLTNL-D---VTPLT-KLTYLNCDTNKLTKLD--VSQNPLLT  130 (457)
T ss_dssp             GCTTCSEEECCS--SCCSCCC--CTTCTTCSEEECCSSCCSCC-C---CTTCT-TCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred             ccCCCCEEEccC--CcCCeEc--cccCCCCCEEECcCCCCcee-e---cCCCC-cCCEEECCCCcCCeec--CCCCCcCC
Confidence            567888888876  2222222  67778888888887654332 2   45555 788888877 666665  66777777


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceE-------------------ecCCCCCcccEEEecccCcceee
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFH-------------------FEAGWFPKLQKLLLWDFIAVKSV  141 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~~l~~~  141 (210)
                      +|++++|.++..+   ++.+++|++|+++.+.....+.                   .....+++|+.|++.++. +..+
T Consensus       131 ~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~-l~~~  206 (457)
T 3bz5_A          131 YLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN-ITKL  206 (457)
T ss_dssp             EEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSC-CSCC
T ss_pred             EEECCCCccceec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCc-CCee
Confidence            7777777765532   4556666666665331111110                   012334455555554433 2222


Q ss_pred             EEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          142 IIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       142 ~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                        ..+.+++|+.|++++|. ++.+|  +..+++|++|++.++.
T Consensus       207 --~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          207 --DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             --CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred             --ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCc
Confidence              24456777777777776 55566  6677788888877764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.50  E-value=3.5e-16  Score=121.77  Aligned_cols=178  Identities=16%  Similarity=0.123  Sum_probs=114.1

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCccE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNLIR   81 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L~~   81 (210)
                      ++++.|++++  .........+..+++|++|++++|......-...+..++ +|++|++.+ .++. .+..++.+++|++
T Consensus        70 ~~l~~L~l~~--n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPR--SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTT--CEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred             ccceEEEcCC--ccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence            4566666654  111112222456778888888876532211112344555 888888887 5553 5566777888888


Q ss_pred             EEEEee-cCCCcch-hhhhcCCCccEEEecCc-cCCc-ceEecCCCCC-cccEEEecccC-cce--eeEEccCCCCcccE
Q 039786           82 LGLELS-GLAEEPI-RVLQASPNLLEILLTGT-YDYE-LFHFEAGWFP-KLQKLLLWDFI-AVK--SVIIEKGAVPDIRE  153 (210)
Q Consensus        82 L~l~~~-~l~~~~~-~~l~~l~~L~~L~l~~~-~~~~-~~~~~~~~~~-~L~~L~l~~~~-~l~--~~~~~~~~~~~L~~  153 (210)
                      |++++| .++...+ ..+..+++|++|+++++ .... .+......++ +|+.|++.+|. .+.  .++.....+++|++
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~  226 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH  226 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence            888888 4665433 34678888888888855 2221 1222345577 89999998874 222  22223346889999


Q ss_pred             EEeccCCCCC-cccccccccccccceeeecch
Q 039786          154 LRIGPCPLLM-EIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       154 L~i~~~~~l~-~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      |++.+|..++ ..+..+..+++|++|++.+|.
T Consensus       227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            9999988443 556677888999999999885

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.50  E-value=1.8e-13  Score=113.70  Aligned_cols=152  Identities=17%  Similarity=0.175  Sum_probs=88.8

Q ss_pred             hcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC---hhhhcCCCccEEEEEeecCCC-cchhhhhcC
Q 039786           26 ANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP---DWIFKLKNLIRLGLELSGLAE-EPIRVLQAS  100 (210)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p---~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l  100 (210)
                      +.+++|++|++++|...... ...+..++ +|++|++.+ .++.++   ..++.+++|++|++++|.++. .+...+..+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~-~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l  427 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSV-FQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA  427 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTT-TTTCCSCS-SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred             cCCCCceEEECCCCccccch-hhhhcccC-CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence            34455555555554332211 12334444 566666655 444433   234555666666666665544 333344555


Q ss_pred             CCccEEEecCccCCcceEecCCCC-CcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCccccc-ccccccccce
Q 039786          101 PNLLEILLTGTYDYELFHFEAGWF-PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLL  178 (210)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l  178 (210)
                      ++|++|+++++.....   ....+ ++|+.|++.++. +..++.....+++|++|++.+|. ++.+|.. +..+++|+.+
T Consensus       428 ~~L~~L~l~~n~l~~~---~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          428 ESILVLNLSSNMLTGS---VFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYI  502 (562)
T ss_dssp             TTCCEEECCSSCCCGG---GGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCE
T ss_pred             ccCCEEECCCCCCCcc---hhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEE
Confidence            6666666653321111   11223 578888887763 55566555678899999999887 6788887 7888999999


Q ss_pred             eeecch
Q 039786          179 KFAGMV  184 (210)
Q Consensus       179 ~l~~~~  184 (210)
                      ++.+++
T Consensus       503 ~l~~N~  508 (562)
T 3a79_B          503 WLHDNP  508 (562)
T ss_dssp             ECCSCC
T ss_pred             EecCCC
Confidence            998854

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.50  E-value=1.4e-13  Score=116.60  Aligned_cols=177  Identities=21%  Similarity=0.186  Sum_probs=103.0

Q ss_pred             CCCCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCc---cCChhhhcC
Q 039786            2 KLRQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMK---KLPDWIFKL   76 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~---~~p~~~~~l   76 (210)
                      ++++|++|++++ +.....++ ..++++++|+.|++++|.... .....+..++ +|+.|++.+ .+.   .+|.++..+
T Consensus       403 ~l~~L~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~-~L~~L~l~~n~l~~~~~~p~~~~~l  479 (680)
T 1ziw_A          403 WLGHLEVLDLGL-NEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPL  479 (680)
T ss_dssp             TCTTCCEEECCS-SCCEEECCSGGGTTCTTCCEEECCSCSEEE-CCTTTTTTCT-TCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred             CCCCCCEEeCCC-CcCccccCcccccCcccccEEecCCCCcce-eChhhhhcCc-ccccchhccccccccccCCcccccC
Confidence            345555555553 22222222 345555666666666543221 1223344445 677777765 332   356677788


Q ss_pred             CCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcc--------eEecCCCCCcccEEEecccCcceeeEEc-cCC
Q 039786           77 KNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYEL--------FHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGA  147 (210)
Q Consensus        77 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--------~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~  147 (210)
                      ++|+.|++++|.++..+...++++++|++|+++++.-...        .......+++|+.|++.++. +..++.. .+.
T Consensus       480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~  558 (680)
T 1ziw_A          480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKD  558 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred             CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHccc
Confidence            8888888888887776666778888888888873321110        01113456777788777654 3344332 345


Q ss_pred             CCcccEEEeccCCCCCcccccc-cccccccceeeecc
Q 039786          148 VPDIRELRIGPCPLLMEIPIGI-EHLKNLKLLKFAGM  183 (210)
Q Consensus       148 ~~~L~~L~i~~~~~l~~lp~~l-~~l~~L~~l~l~~~  183 (210)
                      +++|+.|++++|. ++.+|.+. ..+++|++|+++++
T Consensus       559 l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          559 LFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCC
Confidence            6777777777666 55565553 56677777777665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.50  E-value=1.7e-13  Score=118.81  Aligned_cols=105  Identities=20%  Similarity=0.126  Sum_probs=51.1

Q ss_pred             CCCCCcEEEEEecCCCcchH-HHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CCh--hhhcC
Q 039786            2 KLRQLRKLSIRPQNGNGKDL-CGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPD--WIFKL   76 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~--~~~~l   76 (210)
                      ++++|++|++++ +.....+ +.+++++++|++|++++|.... .....+..++ +|++|++.+ .++. +|.  +++.+
T Consensus        46 ~l~~L~~LdLs~-n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           46 FLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCCSCSEEEECT-TCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             ccccCeEEeCCC-CCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHccCCc-ccCEeeCcCCCCCcccccCcccccc
Confidence            566677777764 2122222 4556666677777776643322 2223344444 555555554 3332 222  24455


Q ss_pred             CCccEEEEEeecCCCcch-hhhhcCCCccEEEec
Q 039786           77 KNLIRLGLELSGLAEEPI-RVLQASPNLLEILLT  109 (210)
Q Consensus        77 ~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~  109 (210)
                      ++|++|++++|.++...+ ..++++++|++|+++
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS  156 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence            555555555555443322 234455555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.49  E-value=5.7e-14  Score=118.99  Aligned_cols=176  Identities=18%  Similarity=0.102  Sum_probs=125.3

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIR   81 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~   81 (210)
                      +++++|++++ .......+..++++++|++|++++|.... .....+..++ +|++|++.+ .++.+|. .++.+++|++
T Consensus        25 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           25 TNITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             TTCSEEECCS-SCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEECCC-CCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhccc-CcCEEECCCCccCccChhhhccCCCCCE
Confidence            4789999986 22233334568899999999999865433 3334456666 899999988 7888876 5888999999


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc---cCCCCcccEEEecc
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE---KGAVPDIRELRIGP  158 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~L~~L~i~~  158 (210)
                      |++++|.++..+...++++++|++|+++.+............+++|+.|++.++.. ...+..   ....++|+.|++.+
T Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTT
T ss_pred             EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCC
Confidence            99999998777667889999999999985433332333445688999999987652 222211   22458899999999


Q ss_pred             CCCCCcccccccccccccceeeecc
Q 039786          159 CPLLMEIPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       159 ~~~l~~lp~~l~~l~~L~~l~l~~~  183 (210)
                      |......|..+..+++|+.+++.++
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~  205 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNV  205 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTC
T ss_pred             CcccccChhhhhhhhhhhhhhcccc
Confidence            8743344555667777777766654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.49  E-value=4.5e-14  Score=102.70  Aligned_cols=78  Identities=28%  Similarity=0.339  Sum_probs=34.8

Q ss_pred             CCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEE
Q 039786           30 NLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEIL  107 (210)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  107 (210)
                      +|++|+++++... ..+...+..++ +|++|++.+ .++.+|. .+..+++|++|++++|.++..+...++.+++|++|+
T Consensus        29 ~l~~L~l~~n~l~-~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           29 QTTYLDLETNSLK-SLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcEEEcCCCccC-cCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            4555555543322 11112233333 455555554 4444332 234455555555555554444333444555555555


Q ss_pred             ec
Q 039786          108 LT  109 (210)
Q Consensus       108 l~  109 (210)
                      ++
T Consensus       107 L~  108 (208)
T 2o6s_A          107 LN  108 (208)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.48  E-value=1.8e-13  Score=113.71  Aligned_cols=39  Identities=15%  Similarity=0.049  Sum_probs=27.1

Q ss_pred             CCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          146 GAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       146 ~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      +.+++|++|++.+|......|..+..+++|++|++.++.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  388 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG  388 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence            345677777777776444466677777888888887764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.48  E-value=1.4e-13  Score=113.75  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=121.5

Q ss_pred             CCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786           29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI  106 (210)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  106 (210)
                      ++|++|++++|... ......+..++ +|++|++.+ .++.++ ..++.+++|++|++++|.++..+...++++++|++|
T Consensus        26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKIT-YIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCC-EECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccC-ccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence            78999999997643 33335577777 999999998 777754 678999999999999999988877789999999999


Q ss_pred             EecCccCCc-ceEecCCCCCcccEEEecccCcceeeEE-ccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          107 LLTGTYDYE-LFHFEAGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       107 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      +++++.... ..+.....+++|+.|++.++.....++. ..+.+++|++|++.+|......|..+..+++|++|++.++.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            998443221 2233456789999999998875555542 45678999999999998555578888888899999888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.46  E-value=9.3e-13  Score=103.22  Aligned_cols=177  Identities=15%  Similarity=0.099  Sum_probs=117.1

Q ss_pred             CCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccccccccCCccCceE-EEeec-cCccC-ChhhhcCCCc
Q 039786            4 RQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQR-LYLTG-NMKKL-PDWIFKLKNL   79 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~-L~l~~-~~~~~-p~~~~~l~~L   79 (210)
                      +++++|++++  .....++ .+++++++|++|++++|...+..+...+..++ ++.+ +.+.+ .++.+ |..+..+++|
T Consensus        30 ~~l~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVL--TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEES--CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             CCCCEEEccC--CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhhhhhcccCCcccccCchhhhhcccc
Confidence            5799999996  3334444 46899999999999997765655556677777 6665 45555 77776 4577889999


Q ss_pred             cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-CCCC-CcccEEEecccCcceeeEEccCCCCcccEEEec
Q 039786           80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-AGWF-PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIG  157 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~  157 (210)
                      ++|++++|.+...+...+....++..+++..+.....+... .... ..++.|++.++. +..++.......+|+++.+.
T Consensus       107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~  185 (350)
T 4ay9_X          107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLS  185 (350)
T ss_dssp             CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECT
T ss_pred             ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhc
Confidence            99999999987766555566677788887643322222211 1122 346667776543 44444433345667777777


Q ss_pred             cCCCCCccccc-ccccccccceeeecch
Q 039786          158 PCPLLMEIPIG-IEHLKNLKLLKFAGMV  184 (210)
Q Consensus       158 ~~~~l~~lp~~-l~~l~~L~~l~l~~~~  184 (210)
                      ++..++.+|.. +..+++|++|+++++.
T Consensus       186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          186 DNNNLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             TCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             cCCcccCCCHHHhccCcccchhhcCCCC
Confidence            66667777654 3667777777777653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.45  E-value=2.4e-13  Score=103.92  Aligned_cols=145  Identities=21%  Similarity=0.189  Sum_probs=112.3

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      .+++|++|++++  .....+.. ++++++|+.|++++|....   +..+..++ +|++|++.+ .++.++ .+..+++|+
T Consensus        66 ~l~~L~~L~L~~--n~l~~~~~-l~~l~~L~~L~l~~n~l~~---~~~l~~l~-~L~~L~L~~n~i~~~~-~l~~l~~L~  137 (291)
T 1h6t_A           66 YLPNVTKLFLNG--NKLTDIKP-LANLKNLGWLFLDENKVKD---LSSLKDLK-KLKSLSLEHNGISDIN-GLVHLPQLE  137 (291)
T ss_dssp             GCTTCCEEECCS--SCCCCCGG-GTTCTTCCEEECCSSCCCC---GGGGTTCT-TCCEEECTTSCCCCCG-GGGGCTTCC
T ss_pred             cCCCCCEEEccC--CccCCCcc-cccCCCCCEEECCCCcCCC---ChhhccCC-CCCEEECCCCcCCCCh-hhcCCCCCC
Confidence            578999999996  22233333 8999999999999875533   33466777 999999998 777775 678899999


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      .|++++|.++..  ..++.+++|+.|+++++.... +. ....+++|+.|++.++. +..++ ....+++|+.|++.+|+
T Consensus       138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L~~N~-i~~l~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEEEE
T ss_pred             EEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-ch-hhcCCCccCEEECCCCc-CCCCh-hhccCCCCCEEECcCCc
Confidence            999999998774  678899999999998443222 21 25678999999999875 44443 35678999999999987

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.44  E-value=1.3e-14  Score=115.13  Aligned_cols=127  Identities=16%  Similarity=0.134  Sum_probs=58.1

Q ss_pred             CceEEEeec-cCc--cCC---hhhhcCCCccEEEEEeecCCCcc----hh-hhhcCCCccEEEecCccCC----cceEec
Q 039786           56 YLQRLYLTG-NMK--KLP---DWIFKLKNLIRLGLELSGLAEEP----IR-VLQASPNLLEILLTGTYDY----ELFHFE  120 (210)
Q Consensus        56 ~L~~L~l~~-~~~--~~p---~~~~~l~~L~~L~l~~~~l~~~~----~~-~l~~l~~L~~L~l~~~~~~----~~~~~~  120 (210)
                      +|++|++.+ .++  .+|   ..+..+++|++|++++|.++...    .. .+..+++|++|+++.+...    ..++..
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~  239 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  239 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence            455555554 333  122   23344555555555555544321    11 3445555555555532211    111222


Q ss_pred             CCCCCcccEEEecccCccee----eEEcc--CCCCcccEEEeccCCCCCc-----ccccc-cccccccceeeecc
Q 039786          121 AGWFPKLQKLLLWDFIAVKS----VIIEK--GAVPDIRELRIGPCPLLME-----IPIGI-EHLKNLKLLKFAGM  183 (210)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~----~~~~~--~~~~~L~~L~i~~~~~l~~-----lp~~l-~~l~~L~~l~l~~~  183 (210)
                      ...+++|+.|++.+|.....    ++...  +.+++|++|++++|. ++.     +|..+ .++++|++|++.+|
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            23445566666655442111    01111  235666666666665 332     55555 44566666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.44  E-value=3.2e-13  Score=112.87  Aligned_cols=145  Identities=21%  Similarity=0.191  Sum_probs=113.2

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      .|++|+.|++++  .....+++ ++.+++|+.|++++|....   +..+..++ +|++|++.+ .++.++ .+..+++|+
T Consensus        63 ~l~~L~~L~Ls~--N~l~~~~~-l~~l~~L~~L~Ls~N~l~~---l~~l~~l~-~L~~L~Ls~N~l~~l~-~l~~l~~L~  134 (605)
T 1m9s_A           63 YLPNVTKLFLNG--NKLTDIKP-LTNLKNLGWLFLDENKIKD---LSSLKDLK-KLKSLSLEHNGISDIN-GLVHLPQLE  134 (605)
T ss_dssp             GCTTCCEEECTT--SCCCCCGG-GGGCTTCCEEECCSSCCCC---CTTSTTCT-TCCEEECTTSCCCCCG-GGGGCTTCS
T ss_pred             cCCCCCEEEeeC--CCCCCChh-hccCCCCCEEECcCCCCCC---ChhhccCC-CCCEEEecCCCCCCCc-cccCCCccC
Confidence            578999999986  22233333 8999999999999975543   23567777 999999998 777775 588999999


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      .|+|++|.++..  ..++.+++|+.|+|+++......+  ...+++|+.|++.++. +..+ .....+++|+.|++.+|+
T Consensus       135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-i~~l-~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCBC-GGGTTCTTCSEEECCSEE
T ss_pred             EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC-CCCC-hHHccCCCCCEEEccCCc
Confidence            999999998774  678899999999998543332222  6678999999999875 4444 345679999999999987

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.43  E-value=6.8e-15  Score=116.77  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=17.7

Q ss_pred             CCCcccEEEeccCCCCCc-----cccccc--ccccccceeeecch
Q 039786          147 AVPDIRELRIGPCPLLME-----IPIGIE--HLKNLKLLKFAGMV  184 (210)
Q Consensus       147 ~~~~L~~L~i~~~~~l~~-----lp~~l~--~l~~L~~l~l~~~~  184 (210)
                      .+++|++|++++|. ++.     ++..+.  .+++|++|++++|.
T Consensus       242 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          242 SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            44555555555555 221     233332  25555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.41  E-value=1.4e-13  Score=96.65  Aligned_cols=127  Identities=15%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             CCCceEEEEecCcc-cccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786           29 KNLESLTVEMTSKE-EILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI  106 (210)
Q Consensus        29 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  106 (210)
                      ++|+.|++++|... ...+ ..+..++ +|++|++.+ .++.+ ..+..+++|++|++++|.++......+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~-~~~~~l~-~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIE-GLTAEFV-NLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCS-SCCGGGG-GCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHH-HHHHhCC-CCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            45555555554432 1111 1123333 555555555 44444 344555555555555555544333344445555555


Q ss_pred             EecCccCCcceEecCCCCCcccEEEecccCcceeeE--EccCCCCcccEEEeccCCCCCcccc----cccccccccceee
Q 039786          107 LLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVI--IEKGAVPDIRELRIGPCPLLMEIPI----GIEHLKNLKLLKF  180 (210)
Q Consensus       107 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~i~~~~~l~~lp~----~l~~l~~L~~l~l  180 (210)
                      +++                        ++. +..++  .....+++|++|++.+|. ++.+|.    .+..+++|++|++
T Consensus       101 ~Ls------------------------~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A          101 NLS------------------------GNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             ECB------------------------SSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETT
T ss_pred             ecc------------------------CCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecC
Confidence            554                        332 11111  122345556666666555 444443    4455666666666


Q ss_pred             ecch
Q 039786          181 AGMV  184 (210)
Q Consensus       181 ~~~~  184 (210)
                      .++.
T Consensus       155 ~~n~  158 (168)
T 2ell_A          155 YDRE  158 (168)
T ss_dssp             EETT
T ss_pred             CCCC
Confidence            5553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.41  E-value=1.9e-13  Score=114.38  Aligned_cols=129  Identities=16%  Similarity=0.022  Sum_probs=75.0

Q ss_pred             CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEE
Q 039786            5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRL   82 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L   82 (210)
                      ++++|++++ +....-.+.+|+++++|++|++++|.. ...+..+|..++ +|++|+|++ .++.+|. ++..+++|++|
T Consensus        53 ~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           53 STKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred             CCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence            567777764 222222234567777777777776533 333334456665 677777776 6666553 55667777777


Q ss_pred             EEEeecCCCcchhhhhcCCCccEEEecCc-cCCcceEecCCCCCcccEEEecccC
Q 039786           83 GLELSGLAEEPIRVLQASPNLLEILLTGT-YDYELFHFEAGWFPKLQKLLLWDFI  136 (210)
Q Consensus        83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~  136 (210)
                      ++++|.++..+...++++++|++|+++.+ ......+.....+++|+.|++.++.
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            77777766655555667777777777632 2221122223445667777766543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.41  E-value=5.3e-13  Score=97.97  Aligned_cols=126  Identities=18%  Similarity=0.183  Sum_probs=55.9

Q ss_pred             CceEEEeec-cCccCC--hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEe
Q 039786           56 YLQRLYLTG-NMKKLP--DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLL  132 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p--~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  132 (210)
                      .+++|++.+ .++.++  ..+..+++|++|++++|.++..+...++.+++|++|+++++............+++|+.|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            344555544 444431  12444555555555555544444444455555555555422211111111233445555555


Q ss_pred             cccCcceee-EEccCCCCcccEEEeccCCCCCcc-cccccccccccceeeecc
Q 039786          133 WDFIAVKSV-IIEKGAVPDIRELRIGPCPLLMEI-PIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       133 ~~~~~l~~~-~~~~~~~~~L~~L~i~~~~~l~~l-p~~l~~l~~L~~l~l~~~  183 (210)
                      .++.. ..+ +.....+++|++|++.+|. ++.+ |..+..+++|++|++.++
T Consensus       113 s~N~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          113 RSNRI-TCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             TTSCC-CCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCCcC-CeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCc
Confidence            54332 211 1222344555555555555 3333 444555555555555553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.39  E-value=4.3e-13  Score=112.31  Aligned_cols=181  Identities=13%  Similarity=0.022  Sum_probs=113.3

Q ss_pred             CCCCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEecC-----------------------cccccccccccCCccCc
Q 039786            2 KLRQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMTS-----------------------KEEILDLLSLSSPPQYL   57 (210)
Q Consensus         2 ~L~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~-----------------------~~~~~~~~~~~~~~~~L   57 (210)
                      ++++|+.|+++. ........+.....+.+|+.+++..+.                       .....+...+..+. ++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~-~l  447 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NL  447 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT-TC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc-cc
Confidence            466777777765 111122223344455556665555432                       22222223334444 66


Q ss_pred             eEEEeec-cCcc-CChhhhcCCCccEEEEEeec-CCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786           58 QRLYLTG-NMKK-LPDWIFKLKNLIRLGLELSG-LAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD  134 (210)
Q Consensus        58 ~~L~l~~-~~~~-~p~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  134 (210)
                      +.+++.. .+.. .+..+..++.|+.|++++|. .....+..+..+++|++|+++++.-....+.....+++|+.|++.+
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            7777766 4444 34456778889999998886 3334456778899999999985533322233456778999999987


Q ss_pred             cCcceeeE-EccCCCCcccEEEeccCCCCCccccccccc-ccccceeeecch
Q 039786          135 FIAVKSVI-IEKGAVPDIRELRIGPCPLLMEIPIGIEHL-KNLKLLKFAGMV  184 (210)
Q Consensus       135 ~~~l~~~~-~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l-~~L~~l~l~~~~  184 (210)
                      +. +..++ ...+.+++|+.|++++|......|..+..+ ++|++|++.+++
T Consensus       528 N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          528 NN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             SC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             Cc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            64 44443 334568899999999998444456667777 689999998743

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.39  E-value=5.6e-13  Score=93.61  Aligned_cols=104  Identities=24%  Similarity=0.231  Sum_probs=83.2

Q ss_pred             CCCCcEEEEEecCCCc-chHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCc
Q 039786            3 LRQLRKLSIRPQNGNG-KDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNL   79 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L   79 (210)
                      .++|++|++++ .... ..++..++.+++|+.|++++|.....   ..+..++ +|++|++.+ .++. +|..+..+++|
T Consensus        23 ~~~L~~L~l~~-n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           23 PAAVRELVLDN-CKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TTSCSEEECCS-CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             cccCCEEECCC-CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCC
Confidence            57899999996 2222 36667778899999999999765433   5567777 999999998 7777 88788889999


Q ss_pred             cEEEEEeecCCCcc-hhhhhcCCCccEEEecCc
Q 039786           80 IRLGLELSGLAEEP-IRVLQASPNLLEILLTGT  111 (210)
Q Consensus        80 ~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~  111 (210)
                      ++|++++|.++..+ +..++.+++|++|+++.+
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            99999999987754 367888999999998744

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.39  E-value=1.5e-12  Score=95.50  Aligned_cols=148  Identities=9%  Similarity=0.057  Sum_probs=108.3

Q ss_pred             cEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEEEE
Q 039786            7 RKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRLGL   84 (210)
Q Consensus         7 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l   84 (210)
                      +.+++++  .....++..+.  ..++.|++++|......+...+..++ +|++|++.+ .++.++. .+..+++|++|++
T Consensus        14 ~~l~~s~--n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSN--QKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCS--SCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCC--CCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            4566664  22333444332  46789999997654443334466777 999999998 7887654 7899999999999


Q ss_pred             EeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceee-EEccCCCCcccEEEeccCC
Q 039786           85 ELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSV-IIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        85 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~~~  160 (210)
                      ++|.++..+...++.+++|++|+++++......+.....+++|+.|++.++. +..+ +.....+++|+.|++.+|+
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence            9999988877889999999999998443332223345667899999999865 3333 3345678999999999998

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.38  E-value=8.5e-13  Score=99.49  Aligned_cols=144  Identities=17%  Similarity=0.127  Sum_probs=90.9

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      ++++|++|++++  .....++ .++.+++|+.|++++|......+   +..++ +|++|++++ .++.+|....  ++|+
T Consensus        39 ~l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~-~L~~L~L~~N~l~~l~~~~~--~~L~  109 (263)
T 1xeu_A           39 ELSGVQNFNGDN--SNIQSLA-GMQFFTNLKELHLSHNQISDLSP---LKDLT-KLEELSVNRNRLKNLNGIPS--ACLS  109 (263)
T ss_dssp             HHTTCSEEECTT--SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCS-SCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred             hcCcCcEEECcC--CCcccch-HHhhCCCCCEEECCCCccCCChh---hccCC-CCCEEECCCCccCCcCcccc--Cccc
Confidence            356778888775  2222222 56777888888887764433222   55565 788888877 6666664333  7888


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      +|++++|.++..  ..++.+++|+.|+++++.... +. ....+++|+.|++.++. +..+ .....+++|+.|++.+|+
T Consensus       110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             EEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCCc
Confidence            888888877663  457778888888887332211 21 34556778888877664 3333 334567778888887776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.38  E-value=3.2e-12  Score=104.47  Aligned_cols=175  Identities=14%  Similarity=0.019  Sum_probs=125.7

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh----------
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD----------   71 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~----------   71 (210)
                      +++|++|++++ +......+..++.+++|++|++++|......+   +..++ +|++|++++ .++.+|.          
T Consensus        33 ~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~-~L~~L~Ls~N~l~~l~~~~~L~~L~L~  107 (487)
T 3oja_A           33 AWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLS-TLRTLDLNNNYVQELLVGPSIETLHAA  107 (487)
T ss_dssp             GGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCT-TCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred             CCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCC-CCCEEEecCCcCCCCCCCCCcCEEECc
Confidence            45899999996 33333345788999999999999876544333   45555 677777765 4433221          


Q ss_pred             -------hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecC-CCCCcccEEEecccCcceeeEE
Q 039786           72 -------WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEA-GWFPKLQKLLLWDFIAVKSVII  143 (210)
Q Consensus        72 -------~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~  143 (210)
                             ....+++|+.|++++|.++......++.+++|++|+++++......+... ..+++|+.|++.++. +..++ 
T Consensus       108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~-  185 (487)
T 3oja_A          108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK-  185 (487)
T ss_dssp             SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE-
T ss_pred             CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccc-
Confidence                   01346788999999988887766778889999999998443222222222 257899999999876 44443 


Q ss_pred             ccCCCCcccEEEeccCCCCCcccccccccccccceeeecchH
Q 039786          144 EKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       144 ~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~~  185 (210)
                      ....+++|+.|++++|. ++.+|..+..+++|+.|+++++..
T Consensus       186 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          186 GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC
T ss_pred             ccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcC
Confidence            33458999999999998 778888899999999999999753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.37  E-value=8.1e-13  Score=96.98  Aligned_cols=124  Identities=18%  Similarity=0.156  Sum_probs=52.3

Q ss_pred             CceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-CCCCCcccEEEe
Q 039786           56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-AGWFPKLQKLLL  132 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l  132 (210)
                      ++++|++.+ .++.++. .+..+++|+.|++++|.++......+.++++|++|+++++... .++.. ...+++|+.|++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEEC
Confidence            445555544 4444332 3444445555555555444443444445555555555422111 11111 123444555554


Q ss_pred             cccCcceee-EEccCCCCcccEEEeccCCCCCcccc-cccccccccceeeec
Q 039786          133 WDFIAVKSV-IIEKGAVPDIRELRIGPCPLLMEIPI-GIEHLKNLKLLKFAG  182 (210)
Q Consensus       133 ~~~~~l~~~-~~~~~~~~~L~~L~i~~~~~l~~lp~-~l~~l~~L~~l~l~~  182 (210)
                      .++. +..+ +.....+++|+.|++.+|. ++.++. .+..+++|++|++.+
T Consensus       112 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          112 NANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCC
Confidence            4432 1211 1122334555555555554 333332 244455555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.37  E-value=1.6e-12  Score=96.01  Aligned_cols=127  Identities=21%  Similarity=0.187  Sum_probs=77.5

Q ss_pred             CceEEEeec-cCccC-ChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786           56 YLQRLYLTG-NMKKL-PDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW  133 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  133 (210)
                      +|++|++.+ .++.+ |..+..+++|++|++++|.+...+...++.+++|++|+++++............+++|+.|++.
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  120 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC  120 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence            677777766 56654 4456667777777777777666555556677777777776332221111113456677777776


Q ss_pred             ccCcceeeEEccCCCCcccEEEeccCCCCCcccc-cccccccccceeeecch
Q 039786          134 DFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPI-GIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       134 ~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~-~l~~l~~L~~l~l~~~~  184 (210)
                      ++. +..++.....+++|++|++.+|. ++.+|. .+..+++|+.|++.+++
T Consensus       121 ~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          121 CNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             SSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence            554 34444444566777777777776 555553 35667777777777643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.36  E-value=1.6e-12  Score=98.01  Aligned_cols=147  Identities=15%  Similarity=0.187  Sum_probs=113.3

Q ss_pred             HhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCC
Q 039786           24 LIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPN  102 (210)
Q Consensus        24 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  102 (210)
                      .++.+++|+.|++++|....   +..+..++ +|++|++.+ .++.++. +..+++|++|++++|.++..+  .+.. ++
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~---l~~l~~l~-~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~--~~~~-~~  107 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQS---LAGMQFFT-NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLN--GIPS-AC  107 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCC---CTTGGGCT-TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCT--TCCC-SS
T ss_pred             chhhcCcCcEEECcCCCccc---chHHhhCC-CCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcC--cccc-Cc
Confidence            46788999999999865433   23566666 899999998 8888876 889999999999999987743  3334 99


Q ss_pred             ccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeec
Q 039786          103 LLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAG  182 (210)
Q Consensus       103 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~  182 (210)
                      |+.|+++++.... + .....+++|+.|++.++. +..++ ..+.+++|+.|++++|. ++.+ ..+..+++|+.|++.+
T Consensus       108 L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          108 LSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEE
T ss_pred             ccEEEccCCccCC-C-hhhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCC
Confidence            9999998443222 2 245678999999999875 44443 45678999999999998 5555 5678899999999998


Q ss_pred             ch
Q 039786          183 MV  184 (210)
Q Consensus       183 ~~  184 (210)
                      ++
T Consensus       182 N~  183 (263)
T 1xeu_A          182 QK  183 (263)
T ss_dssp             EE
T ss_pred             Cc
Confidence            65

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.36  E-value=1.9e-12  Score=95.06  Aligned_cols=129  Identities=19%  Similarity=0.209  Sum_probs=99.8

Q ss_pred             CCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC-ChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786           29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI  106 (210)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  106 (210)
                      ++++.|+++++... ..+...+..++ +|++|++.+ .++.+ |..+..+++|++|++++|.++..+...+.++++|++|
T Consensus        32 ~~l~~L~l~~n~i~-~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           32 ETITEIRLEQNTIK-VIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TTCCEEECCSSCCC-EECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCC-CcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence            68999999986543 33344577777 999999998 78775 7788999999999999999988777778999999999


Q ss_pred             EecCccCCcceEecCCCCCcccEEEecccCcceeeEE-ccCCCCcccEEEeccCC
Q 039786          107 LLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCP  160 (210)
Q Consensus       107 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~  160 (210)
                      +++++............+++|+.|++.++. +..++. ....+++|+.|++.+|+
T Consensus       110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          110 LLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence            998443322222344567899999999875 344433 24568899999999998

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.36  E-value=1.5e-13  Score=94.67  Aligned_cols=123  Identities=18%  Similarity=0.119  Sum_probs=70.4

Q ss_pred             CceEEEeec-cCc--cCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEe
Q 039786           56 YLQRLYLTG-NMK--KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLL  132 (210)
Q Consensus        56 ~L~~L~l~~-~~~--~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  132 (210)
                      +|++|++.+ .++  .+|..+..+++|++|++++|.++..  ..++.+++|++|+++++.....++.....+++|+.|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            566666655 444  4555555566666666666655443  44555666666666533222112222223556666666


Q ss_pred             cccCcceeeE--EccCCCCcccEEEeccCCCCCcccc----cccccccccceeeec
Q 039786          133 WDFIAVKSVI--IEKGAVPDIRELRIGPCPLLMEIPI----GIEHLKNLKLLKFAG  182 (210)
Q Consensus       133 ~~~~~l~~~~--~~~~~~~~L~~L~i~~~~~l~~lp~----~l~~l~~L~~l~l~~  182 (210)
                      .++. +..++  ...+.+++|++|++.+|. ++.+|.    .+..+++|++|++++
T Consensus        96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence            6544 22221  234567888889998887 555554    567888888888753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.35  E-value=4.6e-13  Score=103.55  Aligned_cols=176  Identities=14%  Similarity=0.018  Sum_probs=126.7

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh--------
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW--------   72 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~--------   72 (210)
                      .+++|++|++++ .......+..++++++|++|++++|......+   +..++ +|++|++.+ .++.++..        
T Consensus        32 ~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~-~L~~L~Ls~n~l~~l~~~~~L~~L~l  106 (317)
T 3o53_A           32 SAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLS-TLRTLDLNNNYVQELLVGPSIETLHA  106 (317)
T ss_dssp             TGGGCSEEECTT-SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCT-TCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred             cCCCCCEEECcC-CccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcC-CCCEEECcCCccccccCCCCcCEEEC
Confidence            356899999986 33334446788999999999999876544332   55666 788888876 54443210        


Q ss_pred             ---------hhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecC-CCCCcccEEEecccCcceeeE
Q 039786           73 ---------IFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEA-GWFPKLQKLLLWDFIAVKSVI  142 (210)
Q Consensus        73 ---------~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~  142 (210)
                               ...+++|++|++++|.++..+...++.+++|++|+++++.......... ..+++|+.|++.++. +..++
T Consensus       107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~  185 (317)
T 3o53_A          107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK  185 (317)
T ss_dssp             CSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE
T ss_pred             CCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccc
Confidence                     1346778888888888877666677889999999998443222111111 356899999999876 44443


Q ss_pred             EccCCCCcccEEEeccCCCCCcccccccccccccceeeecchH
Q 039786          143 IEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       143 ~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~~  185 (210)
                       ....+++|++|++++|. ++.+|..+..+++|++|+++++..
T Consensus       186 -~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l  226 (317)
T 3o53_A          186 -GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL  226 (317)
T ss_dssp             -CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC
T ss_pred             -cccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcc
Confidence             33358999999999998 778888889999999999999854

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.35  E-value=2.1e-12  Score=101.66  Aligned_cols=152  Identities=16%  Similarity=0.110  Sum_probs=109.8

Q ss_pred             CCCceEEEEecCccccccccccc-CCccCceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccE
Q 039786           29 KNLESLTVEMTSKEEILDLLSLS-SPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLE  105 (210)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  105 (210)
                      ..++.|++++|... ......+. .++ +|++|++.+ .++.++ ..+..+++|++|++++|.++..+...+..+++|+.
T Consensus        39 ~~l~~L~Ls~N~l~-~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNNLS-RLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSCCC-EECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCCCC-ccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence            46889999986543 33334444 566 899999988 788765 46788999999999999988877777889999999


Q ss_pred             EEecCccCCcceEecCCCCCcccEEEecccCcceeeEEcc----CCCCcccEEEeccCCCCCcccc-ccccccc--ccce
Q 039786          106 ILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEK----GAVPDIRELRIGPCPLLMEIPI-GIEHLKN--LKLL  178 (210)
Q Consensus       106 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~L~~L~i~~~~~l~~lp~-~l~~l~~--L~~l  178 (210)
                      |+++++............+++|+.|++.++. +..++...    ..+++|+.|++++|. ++.+|. .+..++.  ++.|
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l  194 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGL  194 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTE
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceE
Confidence            9998443222122234567899999998764 44444332    458999999999988 666664 4566766  4889


Q ss_pred             eeecch
Q 039786          179 KFAGMV  184 (210)
Q Consensus       179 ~l~~~~  184 (210)
                      ++.+++
T Consensus       195 ~l~~N~  200 (361)
T 2xot_A          195 YLHNNP  200 (361)
T ss_dssp             ECCSSC
T ss_pred             EecCCC
Confidence            998854

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.34  E-value=1.1e-11  Score=97.17  Aligned_cols=177  Identities=16%  Similarity=0.143  Sum_probs=95.6

Q ss_pred             CCCCCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCC
Q 039786            1 MKLRQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLK   77 (210)
Q Consensus         1 ~~L~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~   77 (210)
                      ++|++|++|++++ +.....++ .++.++++++.+.+..++.....+...+..++ +|++|++.+ .+..+|. ......
T Consensus        51 ~~l~~L~~L~Ls~-N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~  128 (350)
T 4ay9_X           51 SGFGDLEKIEISQ-NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSL  128 (350)
T ss_dssp             TTCTTCCEEEEEC-CTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT-TCCEEEEEEECCSSCCCCTTCCBS
T ss_pred             cCCCCCCEEECcC-CCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcc-ccccccccccccccCCchhhcccc
Confidence            3688999999996 22222222 34677777776555544554554445566666 788888877 6665543 222333


Q ss_pred             CccEEEEEeec-CCCcchhhhhcC-CCccEEEec-----------------------CccCCcceEec-CCCCCcccEEE
Q 039786           78 NLIRLGLELSG-LAEEPIRVLQAS-PNLLEILLT-----------------------GTYDYELFHFE-AGWFPKLQKLL  131 (210)
Q Consensus        78 ~L~~L~l~~~~-l~~~~~~~l~~l-~~L~~L~l~-----------------------~~~~~~~~~~~-~~~~~~L~~L~  131 (210)
                      ++..|++.++. +...+...+..+ ..++.|+++                       ++.....++.. ...+++|+.|+
T Consensus       129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld  208 (350)
T 4ay9_X          129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  208 (350)
T ss_dssp             SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred             hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence            44455554432 333332233332 234444443                       22222222211 23445666666


Q ss_pred             ecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786          132 LWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       132 l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~  183 (210)
                      ++++. +..++  .+.+.+|+.|.+.++..++.+|. +..+++|+.+++.+.
T Consensus       209 Ls~N~-l~~lp--~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          209 ISRTR-IHSLP--SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTSC-CCCCC--SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             cCCCC-cCccC--hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            66543 34333  23466677777766666667763 566777777777653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.32  E-value=8.2e-12  Score=103.58  Aligned_cols=135  Identities=16%  Similarity=0.067  Sum_probs=82.5

Q ss_pred             CCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786           28 LKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI  106 (210)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  106 (210)
                      +++|++|++++|.... .+  .+   +.+|++|++.+ .++.+|.   .+++|+.|++++|.++..+.    .+++|++|
T Consensus        99 l~~L~~L~Ls~N~l~~-ip--~l---~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L  165 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LP--EL---PASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVL  165 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CC--CC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEE
T ss_pred             cCCCCEEEccCCCCCC-cc--hh---hcCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEE
Confidence            4555555555543322 11  11   11566666666 5555664   45677777777776655332    46777777


Q ss_pred             EecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcc-------cEEEeccCCCCCccccccccccccccee
Q 039786          107 LLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDI-------RELRIGPCPLLMEIPIGIEHLKNLKLLK  179 (210)
Q Consensus       107 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L-------~~L~i~~~~~l~~lp~~l~~l~~L~~l~  179 (210)
                      +++++.... ++. ..  ++|+.|++.++. +..++. ..  .+|       +.|++++|. ++.+|..+..+++|+.|+
T Consensus       166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~-L~~lp~-~~--~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~  236 (571)
T 3cvr_A          166 SVRNNQLTF-LPE-LP--ESLEALDVSTNL-LESLPA-VP--VRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTII  236 (571)
T ss_dssp             ECCSSCCSC-CCC-CC--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEE
T ss_pred             ECCCCCCCC-cch-hh--CCCCEEECcCCC-CCchhh-HH--HhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEE
Confidence            776332221 222 11  678888887764 344443 22  266       999999987 778999998899999999


Q ss_pred             eecch
Q 039786          180 FAGMV  184 (210)
Q Consensus       180 l~~~~  184 (210)
                      +.+++
T Consensus       237 L~~N~  241 (571)
T 3cvr_A          237 LEDNP  241 (571)
T ss_dssp             CCSSS
T ss_pred             eeCCc
Confidence            99975

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.32  E-value=4.2e-14  Score=114.48  Aligned_cols=177  Identities=18%  Similarity=0.200  Sum_probs=108.7

Q ss_pred             CCCCcEEEEEecCCCcc----hHHHHhhcCCCCceEEEEecCccccccc----ccc-cCCccCceEEEeec-cCcc----
Q 039786            3 LRQLRKLSIRPQNGNGK----DLCGLIANLKNLESLTVEMTSKEEILDL----LSL-SSPPQYLQRLYLTG-NMKK----   68 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~-~~~~~~L~~L~l~~-~~~~----   68 (210)
                      +++|++|++++ .....    .++..++.+++|++|++++|.... ...    ..+ ..++ +|++|++.+ .++.    
T Consensus       198 ~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~~~~~~~-~L~~L~L~~n~l~~~~~~  274 (461)
T 1z7x_W          198 PCQLEALKLES-CGVTSDNCRDLCGIVASKASLRELALGSNKLGD-VGMAELCPGLLHPSS-RLRTLWIWECGITAKGCG  274 (461)
T ss_dssp             CCCCCEEECTT-SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH-HHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHH
T ss_pred             CCCceEEEccC-CCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh-HHHHHHHHHHhcCCC-CceEEECcCCCCCHHHHH
Confidence            34677777764 11111    256666777777788777754321 111    111 1244 788888877 5554    


Q ss_pred             -CChhhhcCCCccEEEEEeecCCCcchhhhhc-----CCCccEEEecCccCCcc----eEecCCCCCcccEEEecccCcc
Q 039786           69 -LPDWIFKLKNLIRLGLELSGLAEEPIRVLQA-----SPNLLEILLTGTYDYEL----FHFEAGWFPKLQKLLLWDFIAV  138 (210)
Q Consensus        69 -~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l  138 (210)
                       ++..+..+++|++|++++|.+.......+..     .++|++|+++++.....    +......+++|+.|++.++. +
T Consensus       275 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i  353 (461)
T 1z7x_W          275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-L  353 (461)
T ss_dssp             HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-C
T ss_pred             HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-c
Confidence             4556667788888888888776554444443     26888888874432211    11122345788888888764 2


Q ss_pred             eeeE-Ec----c-CCCCcccEEEeccCCCCC-----cccccccccccccceeeecch
Q 039786          139 KSVI-IE----K-GAVPDIRELRIGPCPLLM-----EIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       139 ~~~~-~~----~-~~~~~L~~L~i~~~~~l~-----~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      .... ..    . ...++|++|++.+|. ++     .+|..+..+++|++|+++++.
T Consensus       354 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          354 EDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             ccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            2211 10    1 125789999999997 54     677788889999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.31  E-value=1e-11  Score=104.07  Aligned_cols=58  Identities=16%  Similarity=0.178  Sum_probs=43.6

Q ss_pred             CCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          122 GWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ..+++|+.|++.++. +..++.   .+++|+.|++.+|. ++.+|..+..+++|+.|++.+++
T Consensus       238 ~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          238 VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence            345667777776653 333332   56789999999887 67889999999999999999975

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.31  E-value=3.8e-13  Score=92.59  Aligned_cols=101  Identities=23%  Similarity=0.241  Sum_probs=47.5

Q ss_pred             CCCcEEEEEecCCCc-chHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCcc
Q 039786            4 RQLRKLSIRPQNGNG-KDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNLI   80 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L~   80 (210)
                      ++|+.|++++ .... ..++..++.+++|+.|++++|.....   ..+..++ +|++|++++ .++. +|..++.+++|+
T Consensus        17 ~~l~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDN-SRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTT-CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             ccCeEEEccC-CcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCCC
Confidence            4455555553 1111 23344445555555555555432221   2333444 555555555 4444 444444455555


Q ss_pred             EEEEEeecCCCcc-hhhhhcCCCccEEEec
Q 039786           81 RLGLELSGLAEEP-IRVLQASPNLLEILLT  109 (210)
Q Consensus        81 ~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~  109 (210)
                      +|++++|.++..+ +..++.+++|++|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~  121 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLF  121 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence            5555555554422 2444555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=1.6e-12  Score=92.08  Aligned_cols=127  Identities=13%  Similarity=0.078  Sum_probs=79.0

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecC-CCCCcccEEEec
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEA-GWFPKLQKLLLW  133 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~  133 (210)
                      +|++|++.+ .++.+|......++|++|++++|.++..  ..++.+++|++|+++++.-. .++... ..+++|+.|++.
T Consensus        20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECC
T ss_pred             CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECC
Confidence            566666666 5555554333334677777766666543  45566666777766633211 122111 345667777766


Q ss_pred             ccCcceeeEE--ccCCCCcccEEEeccCCCCCccccc----ccccccccceeeecchHHH
Q 039786          134 DFIAVKSVII--EKGAVPDIRELRIGPCPLLMEIPIG----IEHLKNLKLLKFAGMVKQV  187 (210)
Q Consensus       134 ~~~~l~~~~~--~~~~~~~L~~L~i~~~~~l~~lp~~----l~~l~~L~~l~l~~~~~~~  187 (210)
                      ++. +..++.  ....+++|+.|++.+|+ +..+|..    +..+++|+.|++.++..+-
T Consensus        97 ~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           97 NNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             SCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            553 233332  34468889999999998 5667765    7889999999999987643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.30  E-value=9.2e-12  Score=90.39  Aligned_cols=127  Identities=20%  Similarity=0.181  Sum_probs=98.7

Q ss_pred             CceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786           56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW  133 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  133 (210)
                      +|++|++.+ .++.++. .+..+++|++|++++|.++..+...++.+++|++|+++++............+++|+.|++.
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            899999998 7887665 56889999999999999887776678899999999998443222112223567899999998


Q ss_pred             ccCcceeeEEc-cCCCCcccEEEeccCCCCCccccc-ccccccccceeeecch
Q 039786          134 DFIAVKSVIIE-KGAVPDIRELRIGPCPLLMEIPIG-IEHLKNLKLLKFAGMV  184 (210)
Q Consensus       134 ~~~~l~~~~~~-~~~~~~L~~L~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~~  184 (210)
                      ++. +..++.. ...+++|++|++.+|. ++.+|.. +..+++|++|++.+++
T Consensus       109 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          109 TNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             SSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence            764 4444433 3568999999999997 6666665 6889999999999863

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.30  E-value=4.7e-12  Score=93.46  Aligned_cols=128  Identities=20%  Similarity=0.142  Sum_probs=96.6

Q ss_pred             CCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786           29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI  106 (210)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  106 (210)
                      ++|+.|++++|.... .....+..++ +|++|++.+ .++.+|. .+..+++|++|++++|.++..+...++.+++|++|
T Consensus        40 ~~L~~L~Ls~n~i~~-~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITK-LEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCC-CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCc-cCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence            789999999865543 3234566676 899999988 7887764 46889999999999999888776778899999999


Q ss_pred             EecCccCCcceEecCCCCCcccEEEecccCcceeeEE-ccCCCCcccEEEeccCC
Q 039786          107 LLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCP  160 (210)
Q Consensus       107 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~  160 (210)
                      +++++.. ..++.....+++|+.|++.++. +..++. ....+++|+.|++.+|+
T Consensus       118 ~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          118 FMCCNKL-TELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             ECCSSCC-CSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             eccCCcc-cccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence            9984322 2344445677899999998764 444443 24568899999999988

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.29  E-value=5.7e-13  Score=104.86  Aligned_cols=35  Identities=14%  Similarity=0.072  Sum_probs=19.2

Q ss_pred             CcccEEEeccCCCCCccc-----ccccccccccceeeecch
Q 039786          149 PDIRELRIGPCPLLMEIP-----IGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       149 ~~L~~L~i~~~~~l~~lp-----~~l~~l~~L~~l~l~~~~  184 (210)
                      ++|++|++++|. ++..+     ..+..+++|++|++++|.
T Consensus       225 ~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          225 NHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            356666666665 33221     122455667777776664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.25  E-value=2.3e-13  Score=110.11  Aligned_cols=179  Identities=15%  Similarity=0.137  Sum_probs=95.5

Q ss_pred             CCCCcEEEEEecCCCc----chHHHHhhcCCCCceEEEEecCcccccccc----cccCCccCceEEEeec-cCc-----c
Q 039786            3 LRQLRKLSIRPQNGNG----KDLCGLIANLKNLESLTVEMTSKEEILDLL----SLSSPPQYLQRLYLTG-NMK-----K   68 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~-~~~-----~   68 (210)
                      +++|++|++++ ....    ..++..+..+++|++|++++|.... ....    .+.....+|++|++.+ .++     .
T Consensus        27 ~~~L~~L~L~~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           27 LQQCQVVRLDD-CGLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HTTCSEEEEES-SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH-HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCccEEEccC-CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh-HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            46777777775 1111    1445666677777777777654322 1111    1111111577777776 444     2


Q ss_pred             CChhhhcCCCccEEEEEeecCCCcchhhhhc-----CCCccEEEecCccCCcc----eEecCCCCCcccEEEecccCcce
Q 039786           69 LPDWIFKLKNLIRLGLELSGLAEEPIRVLQA-----SPNLLEILLTGTYDYEL----FHFEAGWFPKLQKLLLWDFIAVK  139 (210)
Q Consensus        69 ~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~  139 (210)
                      ++..+..+++|++|++++|.++...+..+..     .++|++|+++++.....    +......+++|+.|++.++....
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence            4556667777777777777765544443332     45677777764321111    11112235677777777654211


Q ss_pred             eeEEcc-----CCCCcccEEEeccCCCCCc-----ccccccccccccceeeecch
Q 039786          140 SVIIEK-----GAVPDIRELRIGPCPLLME-----IPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       140 ~~~~~~-----~~~~~L~~L~i~~~~~l~~-----lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ......     ...++|++|++.+|. ++.     ++..+..+++|++|++.++.
T Consensus       185 ~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            100000     024477777777776 332     45555666777777777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=4.2e-13  Score=111.45  Aligned_cols=174  Identities=16%  Similarity=0.075  Sum_probs=93.1

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCc------------ccccccccccCCccCceEEE-eec-cCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSK------------EEILDLLSLSSPPQYLQRLY-LTG-NMK   67 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------------~~~~~~~~~~~~~~~L~~L~-l~~-~~~   67 (210)
                      ..++|+.|++++  .....++++++++++|+.|++.++..            ........+..++ +|+.|+ +.. .+.
T Consensus       347 ~~~~L~~L~Ls~--n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-~L~~L~~l~~n~~~  423 (567)
T 1dce_A          347 TDEQLFRCELSV--EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRAAYLD  423 (567)
T ss_dssp             TTTTSSSCCCCH--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-HHHHHCGGGHHHHH
T ss_pred             cCccceeccCCh--hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-hcccCcchhhcccc
Confidence            457788888875  44567889999999999998855421            0000011122222 444444 222 111


Q ss_pred             cCCh------hhhc--CCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcce
Q 039786           68 KLPD------WIFK--LKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVK  139 (210)
Q Consensus        68 ~~p~------~~~~--l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  139 (210)
                      .++.      .+..  ...|+.|++++|.++..+  .++.+++|+.|+++++... .++.....+++|+.|++.++. +.
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~  499 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LE  499 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CC
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCCCc--CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CC
Confidence            1111      0110  124666666666655532  2566666666666532211 333344455666666666543 33


Q ss_pred             eeEEccCCCCcccEEEeccCCCCCcc--cccccccccccceeeecch
Q 039786          140 SVIIEKGAVPDIRELRIGPCPLLMEI--PIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       140 ~~~~~~~~~~~L~~L~i~~~~~l~~l--p~~l~~l~~L~~l~l~~~~  184 (210)
                      .++ ..+.+++|+.|++++|. ++.+  |..+..+++|+.|++.+++
T Consensus       500 ~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          500 NVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             CCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence            343 44556666666666665 4444  5666666666666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.23  E-value=2.7e-12  Score=106.91  Aligned_cols=105  Identities=23%  Similarity=0.201  Sum_probs=52.0

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccc-cCCccCceEEEeec------------cCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSL-SSPPQYLQRLYLTG------------NMKK   68 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~------------~~~~   68 (210)
                      .+++|++|+++++......+...++++++|++|++.++  .....+..+ ..++ +|++|++.+            .++.
T Consensus       291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~-~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCK-QLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCT-TCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCC-CCCEEEeecCccccccccccCccCH
Confidence            35677777776522223333344666777777777632  111111112 2233 566666661            2221


Q ss_pred             --CChhhhcCCCccEEEEEeecCCCcchhhhhc-CCCccEEEec
Q 039786           69 --LPDWIFKLKNLIRLGLELSGLAEEPIRVLQA-SPNLLEILLT  109 (210)
Q Consensus        69 --~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~l~  109 (210)
                        ++.....+++|++|++..+.++...+..++. +++|+.|+++
T Consensus       368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence              2222334566666666555555554444443 5666666664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.21  E-value=3.9e-11  Score=94.38  Aligned_cols=128  Identities=22%  Similarity=0.257  Sum_probs=98.4

Q ss_pred             ccCceEEEeec-cCccCCh-hhh-cCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccE
Q 039786           54 PQYLQRLYLTG-NMKKLPD-WIF-KLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQK  129 (210)
Q Consensus        54 ~~~L~~L~l~~-~~~~~p~-~~~-~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~  129 (210)
                      +..++.|++++ .++.++. ++. .+++|+.|++++|.++..+...+..+++|++|+++++.. ..+.. ....+++|+.
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEV  116 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCCE
Confidence            33799999998 7887654 455 899999999999999887777899999999999984432 22222 3456789999


Q ss_pred             EEecccCcceee-EEccCCCCcccEEEeccCCCCCcccccc----cccccccceeeecch
Q 039786          130 LLLWDFIAVKSV-IIEKGAVPDIRELRIGPCPLLMEIPIGI----EHLKNLKLLKFAGMV  184 (210)
Q Consensus       130 L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~~~~l~~lp~~l----~~l~~L~~l~l~~~~  184 (210)
                      |++.++.. ..+ +.....+++|+.|++++|. ++.+|..+    ..+++|+.|+++++.
T Consensus       117 L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          117 LLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             EECCSSCC-CEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             EECCCCcc-cEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            99998763 333 2334568999999999998 77788765    578999999999863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.20  E-value=3.9e-11  Score=86.12  Aligned_cols=105  Identities=15%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             CceEEEeec-cCccCCh--hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEe
Q 039786           56 YLQRLYLTG-NMKKLPD--WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLL  132 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~--~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  132 (210)
                      ++++|++.+ .++.++.  .++.+++|++|++++|.++......++.+++|++|+++++............+++|+.|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            788888888 7777654  3788888999999888887776777888888888888743322212222445677888888


Q ss_pred             cccCcceeeEEccCCCCcccEEEeccCC
Q 039786          133 WDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus       133 ~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      .++.-....+...+.+++|++|++.+|+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            7664322223334567778888888777

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.19  E-value=4.7e-12  Score=105.51  Aligned_cols=106  Identities=24%  Similarity=0.185  Sum_probs=56.6

Q ss_pred             CCCCcEEEEEe-cC--CCcchHHHHhhcCCCCceEEEEecCccccc-------------------------ccccccCCc
Q 039786            3 LRQLRKLSIRP-QN--GNGKDLCGLIANLKNLESLTVEMTSKEEIL-------------------------DLLSLSSPP   54 (210)
Q Consensus         3 L~~L~~L~l~~-~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------------------~~~~~~~~~   54 (210)
                      +++|++|++++ ..  .....+...+.++++|++|++.+|......                         ....+..++
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~  270 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR  270 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence            46666666654 10  112445555556666666666654322100                         011222233


Q ss_pred             cCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcch-hhhhcCCCccEEEec
Q 039786           55 QYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPI-RVLQASPNLLEILLT  109 (210)
Q Consensus        55 ~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~  109 (210)
                       +|+.|.+.+ ....+|..+..+++|++|++++|.++...+ ..+..+++|+.|++.
T Consensus       271 -~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          271 -KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             -TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             -cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence             555555554 233356566667777777777777555443 234567777777775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.19  E-value=1.8e-10  Score=93.30  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=15.7

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeecC
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGL   89 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l   89 (210)
                      +|++|++.+ .++.+| .++.+++|++|++++|.+
T Consensus       174 ~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          174 SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred             cccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC
Confidence            455555544 444444 344445555555544443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.19  E-value=1.1e-12  Score=103.33  Aligned_cols=128  Identities=13%  Similarity=0.080  Sum_probs=75.3

Q ss_pred             CceEEEeec-cCcc-----CChhhhcCC-CccEEEEEeecCCCcchhhhh----cC-CCccEEEecCccCCc-c---eEe
Q 039786           56 YLQRLYLTG-NMKK-----LPDWIFKLK-NLIRLGLELSGLAEEPIRVLQ----AS-PNLLEILLTGTYDYE-L---FHF  119 (210)
Q Consensus        56 ~L~~L~l~~-~~~~-----~p~~~~~l~-~L~~L~l~~~~l~~~~~~~l~----~l-~~L~~L~l~~~~~~~-~---~~~  119 (210)
                      +|++|++.+ .++.     ++.++..++ +|++|++++|.++......++    .+ ++|+.|+++++.-.. .   +..
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~  218 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY  218 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence            677777766 4442     233344454 777777777776655443333    34 478888877332211 0   111


Q ss_pred             cCCC-CCcccEEEecccCcceeeE-----EccCCCCcccEEEeccCC--C-----CCcccccccccccccceeeecch
Q 039786          120 EAGW-FPKLQKLLLWDFIAVKSVI-----IEKGAVPDIRELRIGPCP--L-----LMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       120 ~~~~-~~~L~~L~l~~~~~l~~~~-----~~~~~~~~L~~L~i~~~~--~-----l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      .... .++|+.|++.++. +....     .....+++|+.|++++|.  .     +..++..+..+++|++|+++++.
T Consensus       219 ~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          219 IFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            1111 3588888888764 33221     123567899999999986  1     22344456678889999998864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.18  E-value=1.9e-10  Score=93.15  Aligned_cols=94  Identities=19%  Similarity=0.175  Sum_probs=41.7

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD  134 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  134 (210)
                      +|++|++.+ .++.+|..   .++|++|++++|.++..  +.++.+++|++|+++++.-.. ++   ...++|+.|++.+
T Consensus       154 ~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l--~~~~~l~~L~~L~l~~N~l~~-l~---~~~~~L~~L~l~~  224 (454)
T 1jl5_A          154 FLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKK-LP---DLPLSLESIVAGN  224 (454)
T ss_dssp             TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSS-CC---CCCTTCCEEECCS
T ss_pred             CCCEEECCCCcCcccCCC---cccccEEECcCCcCCcC--ccccCCCCCCEEECCCCcCCc-CC---CCcCcccEEECcC
Confidence            455555544 44444432   13555555555554442  235556666666665221111 10   1123555555554


Q ss_pred             cCcceeeEEccCCCCcccEEEeccCC
Q 039786          135 FIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus       135 ~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      +. +..++ ..+.+++|++|++.+|.
T Consensus       225 n~-l~~lp-~~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          225 NI-LEELP-ELQNLPFLTTIYADNNL  248 (454)
T ss_dssp             SC-CSSCC-CCTTCTTCCEEECCSSC
T ss_pred             Cc-CCccc-ccCCCCCCCEEECCCCc
Confidence            42 22332 23345555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.18  E-value=9.3e-11  Score=98.31  Aligned_cols=52  Identities=17%  Similarity=0.172  Sum_probs=28.7

Q ss_pred             CcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          125 PKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       125 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ++|+.|++.++. +..++   ..+++|+.|++++|. ++.+|.   .+++|++|++.+|.
T Consensus       221 ~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          221 SGLKELIVSGNR-LTSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             TTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred             CCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC
Confidence            445555554432 22222   345666666666665 555555   45677777777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.15  E-value=4.5e-11  Score=85.75  Aligned_cols=125  Identities=14%  Similarity=0.026  Sum_probs=86.9

Q ss_pred             cEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC-ChhhhcCCCccEEEE
Q 039786            7 RKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNLIRLGL   84 (210)
Q Consensus         7 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l   84 (210)
                      +.+++++  .....++..+.  .+++.|+++++......+...+..++ +|++|++.+ .++.+ |..+..+++|++|++
T Consensus        11 ~~l~~s~--~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTG--RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTT--SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCC--CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            4566654  23334444333  38899999886543332222356676 899999988 77775 667888999999999


Q ss_pred             EeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccC
Q 039786           85 ELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFI  136 (210)
Q Consensus        85 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  136 (210)
                      ++|.++..+...++.+++|++|+++++......+.....+++|+.|++.+++
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            9999888777778899999999998443222223344567889999988765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.15  E-value=1.2e-10  Score=83.70  Aligned_cols=104  Identities=18%  Similarity=0.182  Sum_probs=73.2

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecc
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWD  134 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  134 (210)
                      +|++|++.+ .++.+|..+..+++|+.|++++|.++..+...+.++++|++|+++++............+++|+.|++.+
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence            799999988 7888888888899999999999988887777788899999999874322221112234567777777776


Q ss_pred             cCcceeeEEc-cCCCCcccEEEeccCC
Q 039786          135 FIAVKSVIIE-KGAVPDIRELRIGPCP  160 (210)
Q Consensus       135 ~~~l~~~~~~-~~~~~~L~~L~i~~~~  160 (210)
                      +. +..++.. ...+++|+.|++.+|+
T Consensus       112 N~-l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          112 ND-ISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             SC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CC-CCeeChhhhhcCccccEEEeCCCC
Confidence            54 3333322 3346677777777766

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.14  E-value=2.5e-11  Score=85.84  Aligned_cols=102  Identities=19%  Similarity=0.122  Sum_probs=41.8

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe--cCCCCCcccEEEe
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF--EAGWFPKLQKLLL  132 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l  132 (210)
                      +|++|++++ .++.+ ..++.+++|++|++++|.++..+...++.+++|++|+++++... .++.  ....+++|+.|++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEe
Confidence            444444444 33333 23344444444444444444333233344444444444422111 1111  1223444455554


Q ss_pred             cccCcceeeEEc----cCCCCcccEEEeccCC
Q 039786          133 WDFIAVKSVIIE----KGAVPDIRELRIGPCP  160 (210)
Q Consensus       133 ~~~~~l~~~~~~----~~~~~~L~~L~i~~~~  160 (210)
                      .+++- ...+..    ...+++|+.|++..|.
T Consensus       121 ~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          121 LRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             cCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence            44331 111111    2345666666666555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.14  E-value=1.4e-10  Score=96.26  Aligned_cols=152  Identities=14%  Similarity=0.081  Sum_probs=104.8

Q ss_pred             CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEE
Q 039786            5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLG   83 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~   83 (210)
                      +|+.|++++  .....++..+  .++|++|++++|... ..+    ..++ +|++|++.+ .++.+|. +..  +|++|+
T Consensus        60 ~L~~L~Ls~--n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~-~L~~L~Ls~N~l~~ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNR--LNLSSLPDNL--PPQITVLEITQNALI-SLP----ELPA-SLEYLDACDNRLSTLPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCS--SCCSCCCSCC--CTTCSEEECCSSCCS-CCC----CCCT-TCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred             CccEEEeCC--CCCCccCHhH--cCCCCEEECcCCCCc-ccc----cccC-CCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence            788899886  2223344433  378999999886554 222    2234 899999988 7888886 443  899999


Q ss_pred             EEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCC
Q 039786           84 LELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLM  163 (210)
Q Consensus        84 l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~  163 (210)
                      +++|.++..+.    .+++|+.|+++++.... ++.   .+++|+.|++.++. +..++. ..  ++|+.|++++|. ++
T Consensus       127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~-L~  193 (571)
T 3cvr_A          127 VDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNL-LE  193 (571)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSC-CS
T ss_pred             CCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCC-CC
Confidence            99998877433    68899999998443222 221   56899999998875 444444 32  889999999987 67


Q ss_pred             cccccccccccc-------cceeeecchH
Q 039786          164 EIPIGIEHLKNL-------KLLKFAGMVK  185 (210)
Q Consensus       164 ~lp~~l~~l~~L-------~~l~l~~~~~  185 (210)
                      .+|. +..  +|       +.|++.++..
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCC
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcc
Confidence            8887 543  66       9999988753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.13  E-value=1.4e-10  Score=81.95  Aligned_cols=104  Identities=21%  Similarity=0.188  Sum_probs=56.3

Q ss_pred             CceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEec
Q 039786           56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLW  133 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  133 (210)
                      +|++|++.+ .++.+|. .++.+++|++|++++|.++..+...++.+++|++|+++++............+++|+.|++.
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            677777776 5666554 34667777777777777666555556677777777776332111111112344555666655


Q ss_pred             ccCcceeeEEcc-CCCCcccEEEeccCC
Q 039786          134 DFIAVKSVIIEK-GAVPDIRELRIGPCP  160 (210)
Q Consensus       134 ~~~~l~~~~~~~-~~~~~L~~L~i~~~~  160 (210)
                      ++. +..++... ..+++|++|++.+|+
T Consensus       109 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          109 TNQ-LKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             SSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence            443 23333221 335555555555555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.10  E-value=3.1e-12  Score=92.28  Aligned_cols=83  Identities=20%  Similarity=0.207  Sum_probs=43.6

Q ss_pred             HHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhc
Q 039786           21 LCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQA   99 (210)
Q Consensus        21 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   99 (210)
                      ++..++.+++|+.|++++|.... .+  .+..++ +|++|++.+ .++.+|..+..+++|++|++++|.++..  +.++.
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~  113 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEK-IS--SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESC-CC--CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH--HHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCcc-cc--ccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC--Ccccc
Confidence            34455566666666665543322 11  333344 566666655 5555555555555666666666655442  24555


Q ss_pred             CCCccEEEec
Q 039786          100 SPNLLEILLT  109 (210)
Q Consensus       100 l~~L~~L~l~  109 (210)
                      +++|++|+++
T Consensus       114 l~~L~~L~l~  123 (198)
T 1ds9_A          114 LVNLRVLYMS  123 (198)
T ss_dssp             HHHSSEEEES
T ss_pred             CCCCCEEECC
Confidence            5555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.10  E-value=1.9e-11  Score=101.81  Aligned_cols=61  Identities=15%  Similarity=0.167  Sum_probs=37.3

Q ss_pred             CCcccEEEecccCcceeeEEc-cCCCCcccEEEeccCCCCCc--ccccccccccccceeeecchH
Q 039786          124 FPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCPLLME--IPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       124 ~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~~l~~--lp~~l~~l~~L~~l~l~~~~~  185 (210)
                      +++|+.|++.+|......... ...+++|+.|++.+|+. +.  +...+..+++|++|++.+|+.
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            456666666655421111101 13478899999999984 32  222345688999999999863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.09  E-value=3e-10  Score=81.58  Aligned_cols=78  Identities=18%  Similarity=0.208  Sum_probs=37.7

Q ss_pred             CCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786           29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI  106 (210)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  106 (210)
                      ++|+.|+++++... ..+ ..+..++ +|++|++++ .++.++ ..+..+++|++|++++|.++..+...++.+++|++|
T Consensus        31 ~~l~~L~L~~n~i~-~ip-~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVP-KELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSSCCC-SCC-GGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCc-hhH-HHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence            34555555553332 111 2334444 555555554 444433 234555555555555555555444445555555555


Q ss_pred             Eec
Q 039786          107 LLT  109 (210)
Q Consensus       107 ~l~  109 (210)
                      +++
T Consensus       108 ~L~  110 (193)
T 2wfh_A          108 SLH  110 (193)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.07  E-value=6.8e-11  Score=100.98  Aligned_cols=117  Identities=21%  Similarity=0.150  Sum_probs=80.5

Q ss_pred             ccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCc
Q 039786           48 LSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPK  126 (210)
Q Consensus        48 ~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  126 (210)
                      ..+..+. +|+.|+|.+ .+..+|..+..+++|++|+|++|.++.. +..++.+++|++|+|+++... .++.....+++
T Consensus       218 ~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  294 (727)
T 4b8c_D          218 DSKYDDQ-LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ  294 (727)
T ss_dssp             ----CCC-CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred             hhhccCC-CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence            3345555 788888887 7777887777888888888888887743 356788888888888733322 44445566778


Q ss_pred             ccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCccccc
Q 039786          127 LQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIG  168 (210)
Q Consensus       127 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~  168 (210)
                      |+.|++.++. +..++...+.+++|+.|++.+|.....+|..
T Consensus       295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             CSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            8888888764 4566666677888888888888743344443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.06  E-value=1.8e-10  Score=90.47  Aligned_cols=177  Identities=21%  Similarity=0.324  Sum_probs=114.8

Q ss_pred             CCCcEEEEEe-c-C-CC----cchHHHHhhcCCCCceEEEEecCccc--c--c---ccccc-cCCccCceEEEeeccC-c
Q 039786            4 RQLRKLSIRP-Q-N-GN----GKDLCGLIANLKNLESLTVEMTSKEE--I--L---DLLSL-SSPPQYLQRLYLTGNM-K   67 (210)
Q Consensus         4 ~~L~~L~l~~-~-~-~~----~~~~~~~l~~l~~L~~L~l~~~~~~~--~--~---~~~~~-~~~~~~L~~L~l~~~~-~   67 (210)
                      ..++.|.+.. . . ..    ...+..++..+++|+.|.|.......  .  .   ++..+ ..+| +|++|.+.++. .
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P-~L~~L~L~g~~~l  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP-LLNNLKIKGTNNL  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT-TCCEEEEECCBTC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCC-CCcEEEEeCCCCc
Confidence            4567777763 1 1 00    11234456678999999997642211  0  1   12122 4456 99999998732 2


Q ss_pred             cCChhhhcCCCccEEEEEeecCCCcchhhhh--cCCCccEEEecC---ccCCcc-e-----EecCCCCCcccEEEecccC
Q 039786           68 KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQ--ASPNLLEILLTG---TYDYEL-F-----HFEAGWFPKLQKLLLWDFI  136 (210)
Q Consensus        68 ~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~---~~~~~~-~-----~~~~~~~~~L~~L~l~~~~  136 (210)
                      .++. + .+++|++|++..|.++......++  .+|+|+.|+|+.   ...+.. +     ......||+|+.|.+.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            4554 3 379999999999988777776666  799999999962   111110 1     1122468999999998876


Q ss_pred             cceee---EEccCCCCcccEEEeccCCCCCc-----ccccccccccccceeeecch
Q 039786          137 AVKSV---IIEKGAVPDIRELRIGPCPLLME-----IPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       137 ~l~~~---~~~~~~~~~L~~L~i~~~~~l~~-----lp~~l~~l~~L~~l~l~~~~  184 (210)
                      .....   .+....+++|++|+++.|. ++.     ++.++.++++|+.|++.+|.
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence            43211   1223468999999998876 543     45566788999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.04  E-value=2.4e-11  Score=101.18  Aligned_cols=35  Identities=9%  Similarity=0.054  Sum_probs=25.7

Q ss_pred             CCcccEEEeccCCCCCc--ccccccccccccceeeecc
Q 039786          148 VPDIRELRIGPCPLLME--IPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       148 ~~~L~~L~i~~~~~l~~--lp~~l~~l~~L~~l~l~~~  183 (210)
                      +++|++|++.+|. ++.  ++..+..+++|++|++.+|
T Consensus       288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          288 CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence            5788899998888 442  2222457889999999887

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.99  E-value=5.6e-12  Score=90.90  Aligned_cols=151  Identities=17%  Similarity=0.164  Sum_probs=92.9

Q ss_pred             HHhhcCCCCceEEEEecCcccccc-c----ccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhh
Q 039786           23 GLIANLKNLESLTVEMTSKEEILD-L----LSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRV   96 (210)
Q Consensus        23 ~~l~~l~~L~~L~l~~~~~~~~~~-~----~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~   96 (210)
                      ..+.....++.+++..+......+ +    ..+..++ +|++|++.+ .++.+| .+..+++|++|++++|.++..+ ..
T Consensus        12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~-~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~-~~   88 (198)
T 1ds9_A           12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLK-ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIE-NL   88 (198)
T ss_dssp             HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTT-TCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCS-SH
T ss_pred             HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCC-CCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccccc-ch
Confidence            334555555555555543322211 1    1345555 888888887 777788 7788888999999888876532 35


Q ss_pred             hhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEE--ccCCCCcccEEEeccCCCCCcccc-------
Q 039786           97 LQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVII--EKGAVPDIRELRIGPCPLLMEIPI-------  167 (210)
Q Consensus        97 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~i~~~~~l~~lp~-------  167 (210)
                      +..+++|++|+++++.... ++ ....+++|+.|++.++. +..++.  ....+++|++|++.+|+.....|.       
T Consensus        89 ~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  165 (198)
T 1ds9_A           89 DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY  165 (198)
T ss_dssp             HHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred             hhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence            5667888888887332221 22 33456788888887654 232221  345678888888888873222232       


Q ss_pred             ---ccccccccccee
Q 039786          168 ---GIEHLKNLKLLK  179 (210)
Q Consensus       168 ---~l~~l~~L~~l~  179 (210)
                         .+..+++|+.|+
T Consensus       166 ~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          166 RIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHCSSCSEEC
T ss_pred             HHHHHHhCCCcEEEC
Confidence               156677777776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.97  E-value=1.6e-09  Score=76.44  Aligned_cols=106  Identities=23%  Similarity=0.155  Sum_probs=78.1

Q ss_pred             CCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccE
Q 039786           28 LKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLE  105 (210)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  105 (210)
                      .++|+.|+++++... ..+...+..++ +|++|++.+ .++.+|. .+..+++|+.|++++|.++..+...++.+++|++
T Consensus        27 ~~~l~~L~l~~n~l~-~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           27 PSSATRLELESNKLQ-SLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             CTTCSEEECCSSCCC-CCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEeCCCccc-EeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence            368999999986543 33334456666 899999988 7877765 4678899999999999988777667888999999


Q ss_pred             EEecCccCCcceEec-CCCCCcccEEEecccC
Q 039786          106 ILLTGTYDYELFHFE-AGWFPKLQKLLLWDFI  136 (210)
Q Consensus       106 L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~  136 (210)
                      |+++++... .++.. ...+++|+.|++.+++
T Consensus       105 L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          105 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             EECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCcce-EeCHHHhcCCcccCEEEecCCC
Confidence            999844322 23222 3557889999988765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.95  E-value=7.4e-10  Score=92.04  Aligned_cols=119  Identities=17%  Similarity=0.107  Sum_probs=84.3

Q ss_pred             CCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEe
Q 039786           30 NLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILL  108 (210)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  108 (210)
                      .|+.|++++|.....   ..+..++ +|+.|++++ .++.+|..++.+++|+.|++++|.++..+  .++.+++|+.|++
T Consensus       442 ~L~~L~Ls~n~l~~l---p~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL---CHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSSC---CCGGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCCC---cCccccc-cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEEC
Confidence            588899988655432   2366666 899999988 78888888889999999999999887743  7888999999999


Q ss_pred             cCccCCcce-EecCCCCCcccEEEecccCcceeeEEccC----CCCcccEEE
Q 039786          109 TGTYDYELF-HFEAGWFPKLQKLLLWDFIAVKSVIIEKG----AVPDIRELR  155 (210)
Q Consensus       109 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~----~~~~L~~L~  155 (210)
                      +++...... +.....+++|+.|++.+++ +...+....    .+|+|+.|+
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence            844322221 3445678889999988765 333322221    367788775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.89  E-value=8.2e-10  Score=94.34  Aligned_cols=112  Identities=17%  Similarity=0.070  Sum_probs=87.7

Q ss_pred             CChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCC
Q 039786           69 LPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAV  148 (210)
Q Consensus        69 ~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  148 (210)
                      .|..+..++.|+.|+|++|.+...+ ..+..+++|++|+|+++... .++.....+++|+.|++.++. +..++...+.+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence            4567788999999999999987543 45669999999999844322 455556778999999999876 45666667789


Q ss_pred             CcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          149 PDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       149 ~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ++|++|++.+|. ++.+|.++..+++|++|++.++.
T Consensus       293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence            999999999997 78999999999999999999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.87  E-value=3.3e-09  Score=74.82  Aligned_cols=98  Identities=15%  Similarity=0.092  Sum_probs=43.3

Q ss_pred             EEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-CCCCCcccEEEecccC
Q 039786           59 RLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-AGWFPKLQKLLLWDFI  136 (210)
Q Consensus        59 ~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~  136 (210)
                      .+++.+ .++.+|..+.  ++|++|++++|.++..+...++.+++|++|++++... ..++.. ...+++|+.|++.++.
T Consensus        16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCCCc
Confidence            444444 4444443322  4555555555555444444445555555555542211 111111 1234455555554432


Q ss_pred             cceeeEEc-cCCCCcccEEEeccCC
Q 039786          137 AVKSVIIE-KGAVPDIRELRIGPCP  160 (210)
Q Consensus       137 ~l~~~~~~-~~~~~~L~~L~i~~~~  160 (210)
                       +..++.. .+.+++|++|++.+|+
T Consensus        93 -l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           93 -LKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             -CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             -cceeCHHHhccccCCCEEEeCCCC
Confidence             2222222 3345666666666665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.81  E-value=5.8e-09  Score=73.24  Aligned_cols=54  Identities=31%  Similarity=0.413  Sum_probs=23.8

Q ss_pred             CceEEEeec-cCccC-ChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786           56 YLQRLYLTG-NMKKL-PDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      +|++|++.+ .++.+ |..+..+++|++|++++|.++..+...+..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            444444444 44443 2234444444444444444444333334444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=2.8e-08  Score=77.03  Aligned_cols=99  Identities=15%  Similarity=0.067  Sum_probs=45.5

Q ss_pred             CCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCccc-EEEecccCcceeeEE-ccCCCCccc
Q 039786           76 LKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQ-KLLLWDFIAVKSVII-EKGAVPDIR  152 (210)
Q Consensus        76 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~-~L~l~~~~~l~~~~~-~~~~~~~L~  152 (210)
                      +++|+.+++.+|.++..+...+.++++|+.+.+...  ...+.. ...++++|+ .+.+.+  .+..+.. ....+++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            455555655555555544455555666666655421  111111 123334555 555543  2332221 122345566


Q ss_pred             EEEeccCCCCCcccc-ccccccccccee
Q 039786          153 ELRIGPCPLLMEIPI-GIEHLKNLKLLK  179 (210)
Q Consensus       153 ~L~i~~~~~l~~lp~-~l~~l~~L~~l~  179 (210)
                      .+++..+. ++.++. .+..+++|+.|+
T Consensus       301 ~l~l~~n~-i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGDK-ITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred             EEEeCCCc-cCccchhhhcCCcchhhhc
Confidence            66655444 344433 334555665554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.75  E-value=1.3e-08  Score=71.79  Aligned_cols=54  Identities=30%  Similarity=0.364  Sum_probs=25.3

Q ss_pred             CceEEEeec-cCccC-ChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786           56 YLQRLYLTG-NMKKL-PDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      +|++|++.+ .++.+ |..+..+++|++|++++|.++..+...++.+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            455555544 44443 3334444555555555554444433334445555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.71  E-value=1.6e-08  Score=70.92  Aligned_cols=98  Identities=19%  Similarity=0.122  Sum_probs=74.0

Q ss_pred             CcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh-hhhcCCCccEEE
Q 039786            6 LRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNLIRLG   83 (210)
Q Consensus         6 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~   83 (210)
                      .+.+++++  .....++..+  .++|+.|++++|.... .....+..++ +|++|++.+ .++.+|. .+..+++|++|+
T Consensus        11 ~~~l~~s~--n~l~~ip~~~--~~~l~~L~L~~N~i~~-~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           11 GTTVDCSG--KSLASVPTGI--PTTTQVLYLYDNQITK-LEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             TTEEECTT--SCCSSCCSCC--CTTCSEEECCSSCCCC-CCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEeCC--CCcCccCccC--CCCCcEEEcCCCcCCc-cChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            45677764  3333444433  3789999999865433 3334567777 899999998 8888776 457899999999


Q ss_pred             EEeecCCCcchhhhhcCCCccEEEec
Q 039786           84 LELSGLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        84 l~~~~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      +++|.++..+...+..+++|++|+++
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            99999988777778999999999998

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.59  E-value=1.3e-07  Score=73.31  Aligned_cols=85  Identities=14%  Similarity=0.201  Sum_probs=51.2

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhc-CCCCceEEEEecCccc-------------------ccccccccC--------Cc
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIAN-LKNLESLTVEMTSKEE-------------------ILDLLSLSS--------PP   54 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~-------------------~~~~~~~~~--------~~   54 (210)
                      +++++.|.+++ ...... ...+.. +++|+.|+++++....                   ..+...|..        +.
T Consensus        24 ~~~l~~L~l~g-~i~~~~-~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~  101 (329)
T 3sb4_A           24 ANSITHLTLTG-KLNAED-FRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ  101 (329)
T ss_dssp             HHHCSEEEEEE-EECHHH-HHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred             hCceeEEEEec-cccHHH-HHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence            34678888886 222222 234444 7888899888765430                   111223334        55


Q ss_pred             cCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCC
Q 039786           55 QYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLA   90 (210)
Q Consensus        55 ~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~   90 (210)
                       +|+.+.+...++.++. .+..+++|+.+++..|.+.
T Consensus       102 -~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~  137 (329)
T 3sb4_A          102 -TLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAP  137 (329)
T ss_dssp             -TCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred             -CCcEEECCccccchhHHHhhcCcccceEEcCCCCcc
Confidence             7888888776666554 5677888888888777543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.53  E-value=1.3e-07  Score=73.57  Aligned_cols=90  Identities=22%  Similarity=0.269  Sum_probs=62.7

Q ss_pred             CcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcch
Q 039786           17 NGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPI   94 (210)
Q Consensus        17 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~   94 (210)
                      ....++. ++.+++|+.|+|++++.....+...+..++ +|++|+|++ .++.++ ..+..+++|+.|+|++|.++..+.
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence            3455666 788888888888753343444444566676 788888887 677644 466788888888888888777665


Q ss_pred             hhhhcCCCccEEEec
Q 039786           95 RVLQASPNLLEILLT  109 (210)
Q Consensus        95 ~~l~~l~~L~~L~l~  109 (210)
                      ..+..++ |+.|++.
T Consensus        98 ~~~~~~~-L~~l~l~  111 (347)
T 2ifg_A           98 KTVQGLS-LQELVLS  111 (347)
T ss_dssp             TTTCSCC-CCEEECC
T ss_pred             HHcccCC-ceEEEee
Confidence            5555555 8888887

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=2.5e-07  Score=64.84  Aligned_cols=83  Identities=17%  Similarity=0.152  Sum_probs=43.9

Q ss_pred             CceEEEeec-cCcc--CChhhhcCCCccEEEEEeec-CCCcchhhhhcC----CCccEEEecCccCCcce-EecCCCCCc
Q 039786           56 YLQRLYLTG-NMKK--LPDWIFKLKNLIRLGLELSG-LAEEPIRVLQAS----PNLLEILLTGTYDYELF-HFEAGWFPK  126 (210)
Q Consensus        56 ~L~~L~l~~-~~~~--~p~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l----~~L~~L~l~~~~~~~~~-~~~~~~~~~  126 (210)
                      +|++|++++ .++.  +. .+..+++|++|+|++|. +++..+..++.+    ++|++|+|+.|.....- ......+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            466666665 3332  21 23556666666666665 666556666554    35666666655322111 111234566


Q ss_pred             ccEEEecccCcce
Q 039786          127 LQKLLLWDFIAVK  139 (210)
Q Consensus       127 L~~L~l~~~~~l~  139 (210)
                      |+.|++.+|+.+.
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            6666666666544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.46  E-value=6.6e-09  Score=81.98  Aligned_cols=154  Identities=14%  Similarity=0.062  Sum_probs=89.3

Q ss_pred             CCCcEEEEEecCCCcc----hHHHHhhcC-CCCceEEEEecCccccccccccc-CCccCceEEEeec-cCccC-----Ch
Q 039786            4 RQLRKLSIRPQNGNGK----DLCGLIANL-KNLESLTVEMTSKEEILDLLSLS-SPPQYLQRLYLTG-NMKKL-----PD   71 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~~-----p~   71 (210)
                      ++|+.|++++ +....    .+...+... ++|+.|++++|.... .....+. .+. +|++|++.+ .++..     ..
T Consensus        72 ~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-AGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-HHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHH
T ss_pred             hhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-HHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHH
Confidence            5788888885 22222    233333322 688899998865422 2222222 234 788888887 55431     11


Q ss_pred             hh-hcCCCccEEEEEeecCCCcchhhh----hcCCCccEEEecCccCCcc----eEecCCCCCcccEEEecccCccee--
Q 039786           72 WI-FKLKNLIRLGLELSGLAEEPIRVL----QASPNLLEILLTGTYDYEL----FHFEAGWFPKLQKLLLWDFIAVKS--  140 (210)
Q Consensus        72 ~~-~~l~~L~~L~l~~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~--  140 (210)
                      .+ ...++|+.|++++|.++......+    ...++|++|+++++...+.    +.......++|+.|++.+|.-...  
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence            22 235789999999988766544433    5688899999884432211    111223456888888887753211  


Q ss_pred             --eEEccCCCCcccEEEeccCC
Q 039786          141 --VIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus       141 --~~~~~~~~~~L~~L~i~~~~  160 (210)
                        +.......++|++|++++|.
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHHhCCCCCEEeccCCC
Confidence              11111235788999998887

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.45  E-value=4.4e-09  Score=83.01  Aligned_cols=155  Identities=15%  Similarity=0.107  Sum_probs=101.6

Q ss_pred             CCCCceEEEEecCccccccccc----ccCCccCceEEEeec-cCcc--CChhhhcCCCccEEEEEeecCCCcchhhhh--
Q 039786           28 LKNLESLTVEMTSKEEILDLLS----LSSPPQYLQRLYLTG-NMKK--LPDWIFKLKNLIRLGLELSGLAEEPIRVLQ--   98 (210)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~-~~~~--~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~--   98 (210)
                      +++|+.|++++|.... .....    +...+.+|++|++.+ .++.  +......+++|+.|++++|.++......++  
T Consensus        71 ~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTP-VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCH-HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCH-HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            3689999999876432 11111    122223899999988 5543  222334567899999999998877665553  


Q ss_pred             ---cCCCccEEEecCccCCc----ceEecCCCCCcccEEEecccCccee----eEEccCCCCcccEEEeccCCCCC----
Q 039786           99 ---ASPNLLEILLTGTYDYE----LFHFEAGWFPKLQKLLLWDFIAVKS----VIIEKGAVPDIRELRIGPCPLLM----  163 (210)
Q Consensus        99 ---~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~i~~~~~l~----  163 (210)
                         ..++|+.|+++++....    .+.......++|++|++.++.-...    +.......++|+.|++++|. ++    
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~  228 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA  228 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence               46899999998554221    1111123568899999998763211    11122345789999999998 44    


Q ss_pred             -cccccccccccccceeeecch
Q 039786          164 -EIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       164 -~lp~~l~~l~~L~~l~l~~~~  184 (210)
                       .++..+...++|++|++.++.
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHHhCCCCCEEeccCCC
Confidence             234445567899999999985

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.41  E-value=3.6e-07  Score=64.06  Aligned_cols=83  Identities=13%  Similarity=0.244  Sum_probs=62.9

Q ss_pred             CCCceEEEEecCcccccccccccCCccCceEEEeec--cCcc--CChhhhcC----CCccEEEEEeec-CCCcchhhhhc
Q 039786           29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKK--LPDWIFKL----KNLIRLGLELSG-LAEEPIRVLQA   99 (210)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~--~p~~~~~l----~~L~~L~l~~~~-l~~~~~~~l~~   99 (210)
                      -.|++|++++|. +.+..+..+..++ +|++|+|++  .++.  +. .+..+    ++|++|+|++|. +++..+..+..
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHH  137 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence            468999999876 6666666777777 899999987  3443  21 33443    479999999997 88888888889


Q ss_pred             CCCccEEEecCccCC
Q 039786          100 SPNLLEILLTGTYDY  114 (210)
Q Consensus       100 l~~L~~L~l~~~~~~  114 (210)
                      +++|++|++++|...
T Consensus       138 ~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGV  152 (176)
T ss_dssp             CTTCCEEEEESCTTC
T ss_pred             CCCCCEEECCCCCCC
Confidence            999999999877533

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.35  E-value=4.6e-07  Score=70.55  Aligned_cols=84  Identities=21%  Similarity=0.205  Sum_probs=55.8

Q ss_pred             ccCCccCceEEEeec--cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-CCCCC
Q 039786           50 LSSPPQYLQRLYLTG--NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-AGWFP  125 (210)
Q Consensus        50 ~~~~~~~L~~L~l~~--~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~  125 (210)
                      +..+. +|++|+|.+  .++.+| ..++.+++|+.|+|++|.++..+...++.+++|++|+|++..-. .++.. ...+ 
T Consensus        27 l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~-  103 (347)
T 2ifg_A           27 LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL-  103 (347)
T ss_dssp             SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSC-
T ss_pred             CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccC-
Confidence            55555 788888863  667665 46778888888888888887777777888888888888733211 22211 1222 


Q ss_pred             cccEEEecccC
Q 039786          126 KLQKLLLWDFI  136 (210)
Q Consensus       126 ~L~~L~l~~~~  136 (210)
                      .|+.|++.+++
T Consensus       104 ~L~~l~l~~N~  114 (347)
T 2ifg_A          104 SLQELVLSGNP  114 (347)
T ss_dssp             CCCEEECCSSC
T ss_pred             CceEEEeeCCC
Confidence            37777776544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.34  E-value=4.1e-07  Score=71.39  Aligned_cols=173  Identities=14%  Similarity=0.159  Sum_probs=102.8

Q ss_pred             CCCCCcEEEEEe-cCC-------CcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCcc-CCh
Q 039786            2 KLRQLRKLSIRP-QNG-------NGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPD   71 (210)
Q Consensus         2 ~L~~L~~L~l~~-~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~   71 (210)
                      ++++|+.|.+.. ...       ....+...+..+++|+.|.+.++...   .+..+. .+ +|++|.+.. .+.. .-.
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l---~l~~~~-~~-~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL---SIGKKP-RP-NLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC---BCCSCB-CT-TCSEEEEECSBCCHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc---eecccc-CC-CCcEEEEecCCCChHHHH
Confidence            468999999964 111       01246677888999999999986322   122233 45 899999986 4332 111


Q ss_pred             hh--hcCCCccEEEEEeec---CCCcch----hhh--hcCCCccEEEecCccCCcc---eEecCCCCCcccEEEecccCc
Q 039786           72 WI--FKLKNLIRLGLELSG---LAEEPI----RVL--QASPNLLEILLTGTYDYEL---FHFEAGWFPKLQKLLLWDFIA  137 (210)
Q Consensus        72 ~~--~~l~~L~~L~l~~~~---l~~~~~----~~l--~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~  137 (210)
                      .+  ..+++|+.|+|+.+.   ......    ..+  ..+|+|++|.+.++.....   .......+++|+.|+++.+. 
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-  290 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-  290 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-
Confidence            22  378999999997421   111111    112  3589999999985543221   11122467999999997653 


Q ss_pred             ceee-----EEccCCCCcccEEEeccCCCCCccccccccccc-c-cceeeecc
Q 039786          138 VKSV-----IIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKN-L-KLLKFAGM  183 (210)
Q Consensus       138 l~~~-----~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~-L-~~l~l~~~  183 (210)
                      +...     ......+++|+.|++..|. ++  +.++..+.. + -+++++..
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~--d~~~~~l~~alg~~~~~~~~  340 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYNY-LS--DEMKKELQKSLPMKIDVSDS  340 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSBB-CC--HHHHHHHHHHCCSEEECCSB
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCCc-CC--HHHHHHHHHHcCCEEEecCC
Confidence            3321     1111247899999999886 43  233334433 2 34556554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.20  E-value=9.4e-06  Score=64.59  Aligned_cols=124  Identities=10%  Similarity=0.078  Sum_probs=57.8

Q ss_pred             CceEEEeeccCccCCh-hhhcCCCccEEEEEeecCC-----CcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCccc
Q 039786           56 YLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLA-----EEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQ  128 (210)
Q Consensus        56 ~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~  128 (210)
                      +|+.+.+...++.++. .+..+++|+.+.+.++.+.     ..+...+.++++|+.+.+.+.  ...+.. ...++++|+
T Consensus       249 ~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCC
T ss_pred             CccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCcc
Confidence            3444444433443322 3445556666666554432     122334555566666655421  111111 123345666


Q ss_pred             EEEecccCcceeeEEc-cCCCCcccEEEeccCCCCCcccc-ccccc-ccccceeeecchH
Q 039786          129 KLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCPLLMEIPI-GIEHL-KNLKLLKFAGMVK  185 (210)
Q Consensus       129 ~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~~l~~lp~-~l~~l-~~L~~l~l~~~~~  185 (210)
                      .+.+...  +..+... ...+ +|+.+++.++. ...++. .+..+ .+++.|+|-....
T Consensus       327 ~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          327 QLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EEEECTT--CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHHHH
Confidence            6666431  3322211 1234 67888887765 333333 23444 3677777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.06  E-value=5.6e-05  Score=60.10  Aligned_cols=171  Identities=15%  Similarity=0.209  Sum_probs=112.5

Q ss_pred             CCCCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~~~~~l~~L~   80 (210)
                      ++++|+.+++..  .....+. .++. .++|+.+.+..+  ....+..+|..+. +|+.+.+...++.++.....-.+|+
T Consensus       178 ~c~~L~~l~l~~--n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~-~L~~l~l~~~l~~I~~~aF~~~~L~  251 (401)
T 4fdw_A          178 YCYNLKKADLSK--TKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTS-QLKTIEIPENVSTIGQEAFRESGIT  251 (401)
T ss_dssp             TCTTCCEEECTT--SCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCT-TCCCEECCTTCCEECTTTTTTCCCS
T ss_pred             CcccCCeeecCC--CcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCC-CCCEEecCCCccCccccccccCCcc
Confidence            578899999874  1222222 2333 589999999753  4444556677777 8999999887776655332227999


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCc-cC-CcceEec---CCCCCcccEEEecccCcceeeEEc-cCCCCcccEE
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGT-YD-YELFHFE---AGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIREL  154 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~-~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L  154 (210)
                      .+.+.+ .++..+..++.++++|+.+.+... .. .....+.   ..++++|+.+.+.+  .+..+... ...+.+|+.+
T Consensus       252 ~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l  328 (401)
T 4fdw_A          252 TVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQL  328 (401)
T ss_dssp             EEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEE
T ss_pred             EEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEE
Confidence            999954 466766778899999999999732 21 1111223   34567899988873  24444322 2346889999


Q ss_pred             EeccCCCCCcccc-cccccccccceeeecch
Q 039786          155 RIGPCPLLMEIPI-GIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       155 ~i~~~~~l~~lp~-~l~~l~~L~~l~l~~~~  184 (210)
                      .+..+  ++.++. .+..+ +|++|.+.++.
T Consensus       329 ~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          329 TIPAN--VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             EECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             EECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence            99654  455544 45677 99999998753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.69  E-value=6.3e-06  Score=58.42  Aligned_cols=117  Identities=16%  Similarity=0.125  Sum_probs=72.8

Q ss_pred             chHHHHhhcCCCCceEEEEecCccccccc----ccccCCccCceEEEeec-cCcc-----CChhhhcCCCccEEEEEeec
Q 039786           19 KDLCGLIANLKNLESLTVEMTSKEEILDL----LSLSSPPQYLQRLYLTG-NMKK-----LPDWIFKLKNLIRLGLELSG   88 (210)
Q Consensus        19 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~-~~~~-----~p~~~~~l~~L~~L~l~~~~   88 (210)
                      ..+...+...+.|++|++++|........    ..+...+ +|++|+|.+ .+..     +...+...+.|++|+|++|.
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            34456677788999999988623322211    2234444 799999987 5542     33345566889999999998


Q ss_pred             CCCcchh----hhhcCCCccEEEe--cCccCCcc----eEecCCCCCcccEEEecccC
Q 039786           89 LAEEPIR----VLQASPNLLEILL--TGTYDYEL----FHFEAGWFPKLQKLLLWDFI  136 (210)
Q Consensus        89 l~~~~~~----~l~~l~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~  136 (210)
                      +......    .+...++|++|++  +.+..+..    +.......++|+.|++.++.
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            8776533    3456688999999  52322211    11112234678899887664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.59  E-value=1.7e-05  Score=56.15  Aligned_cols=109  Identities=6%  Similarity=-0.044  Sum_probs=61.4

Q ss_pred             cCCccCceEEEeecc--Ccc-----CChhhhcCCCccEEEEEeecCCCcchhhh----hcCCCccEEEecCccCCcc---
Q 039786           51 SSPPQYLQRLYLTGN--MKK-----LPDWIFKLKNLIRLGLELSGLAEEPIRVL----QASPNLLEILLTGTYDYEL---  116 (210)
Q Consensus        51 ~~~~~~L~~L~l~~~--~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~---  116 (210)
                      ...+ +|++|++.++  +..     +...+...++|++|+|++|.+.......+    ...++|++|+|+++.....   
T Consensus        33 ~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           33 NNDP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             TTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            3344 7888888752  321     22334556788888888888776554333    3457888888874332211   


Q ss_pred             -eEecCCCCCcccEEEe--cccCccee----eEEccCCCCcccEEEeccCC
Q 039786          117 -FHFEAGWFPKLQKLLL--WDFIAVKS----VIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus       117 -~~~~~~~~~~L~~L~l--~~~~~l~~----~~~~~~~~~~L~~L~i~~~~  160 (210)
                       +.......++|+.|++  .++.-...    +.......+.|++|++.+|.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence             1112233467888888  44432111    11111134678888888776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.40  E-value=0.00012  Score=54.83  Aligned_cols=80  Identities=25%  Similarity=0.283  Sum_probs=56.8

Q ss_pred             hcCCCCceEEEEecCcccccccc-cccCCccCceEEEeec-cCccCChhhhcCC--CccEEEEEeecCCCcc-------h
Q 039786           26 ANLKNLESLTVEMTSKEEILDLL-SLSSPPQYLQRLYLTG-NMKKLPDWIFKLK--NLIRLGLELSGLAEEP-------I   94 (210)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~--~L~~L~l~~~~l~~~~-------~   94 (210)
                      .++++|+.|++++|.......+. .+..++ +|+.|+|++ .++.+. .+..+.  +|+.|++++|.+....       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            46899999999997664432222 223566 999999988 676653 344444  9999999999876421       2


Q ss_pred             hhhhcCCCccEEE
Q 039786           95 RVLQASPNLLEIL  107 (210)
Q Consensus        95 ~~l~~l~~L~~L~  107 (210)
                      ..+..+|+|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            3467899999886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.08  E-value=0.00017  Score=54.00  Aligned_cols=79  Identities=27%  Similarity=0.302  Sum_probs=55.0

Q ss_pred             CCccCceEEEeec-cCcc---CChhhhcCCCccEEEEEeecCCCc-chhhhhcCCCccEEEecCccCCcceE-------e
Q 039786           52 SPPQYLQRLYLTG-NMKK---LPDWIFKLKNLIRLGLELSGLAEE-PIRVLQASPNLLEILLTGTYDYELFH-------F  119 (210)
Q Consensus        52 ~~~~~L~~L~l~~-~~~~---~p~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~-------~  119 (210)
                      .++ +|+.|+|++ .++.   +|..+..+++|+.|+|++|.++.. .+..+..+ +|+.|++++.......+       .
T Consensus       168 ~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            355 899999998 6665   456678999999999999998774 23344444 99999998332222111       1


Q ss_pred             cCCCCCcccEEEe
Q 039786          120 EAGWFPKLQKLLL  132 (210)
Q Consensus       120 ~~~~~~~L~~L~l  132 (210)
                      ....||+|+.|+-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            2346888988864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.44  E-value=0.049  Score=42.48  Aligned_cols=81  Identities=15%  Similarity=0.178  Sum_probs=42.4

Q ss_pred             hhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCc
Q 039786           25 IANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNL  103 (210)
Q Consensus        25 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  103 (210)
                      +....+|+...+...  ........+.... .|+.+.+...++.+.. .+..+.+|+.+.+..+ +...+...+.++++|
T Consensus       213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~-~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          213 FSYGKNLKKITITSG--VTTLGDGAFYGMK-ALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTCSSCSEEECCTT--CCEECTTTTTTCS-SCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             cccccccceeeeccc--eeEEccccccCCc-cceEEEcCCCccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            344556666666432  1222223344444 5666666554444432 3455666666666543 444444556666677


Q ss_pred             cEEEec
Q 039786          104 LEILLT  109 (210)
Q Consensus       104 ~~L~l~  109 (210)
                      +.+.+.
T Consensus       289 ~~i~l~  294 (379)
T 4h09_A          289 TKVVMD  294 (379)
T ss_dssp             CEEEEC
T ss_pred             cccccc
Confidence            766664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.39  E-value=0.043  Score=43.12  Aligned_cols=107  Identities=10%  Similarity=0.068  Sum_probs=72.5

Q ss_pred             HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCC
Q 039786           23 GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASP  101 (210)
Q Consensus        23 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~  101 (210)
                      .++..+..|+.+.+....  ...+-.++.... .|+.+.+...++.++. .+..+.+|+.+.|..+ ++.....++.+++
T Consensus       259 ~aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~-~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSV--VSIGTGAFMNCP-ALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTTC--CEECTTTTTTCT-TCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ceeeecccccEEeccccc--ceecCccccccc-ccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            346677889998886532  233334556665 8999998777777665 5667899999998764 5555566788999


Q ss_pred             CccEEEecCccCCcceE-ecCCCCCcccEEEeccc
Q 039786          102 NLLEILLTGTYDYELFH-FEAGWFPKLQKLLLWDF  135 (210)
Q Consensus       102 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~  135 (210)
                      +|+.+.+...  ...+. .....|++|+.+.+.+.
T Consensus       335 ~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          335 QLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence            9999998522  12221 23456778888887653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.21  E-value=0.021  Score=44.94  Aligned_cols=103  Identities=15%  Similarity=0.069  Sum_probs=66.9

Q ss_pred             HhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCC
Q 039786           24 LIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPN  102 (210)
Q Consensus        24 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  102 (210)
                      .+..+..++....... .   .+-..+.... +|+.+.+...++.++. .+..+.+|+.+++..+ ++..+..++.++++
T Consensus       271 ~F~~~~~l~~~~~~~~-~---i~~~~F~~~~-~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSV-I---VPEKTFYGCS-SLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS  344 (394)
T ss_dssp             TTTTCTTCCEEEECSS-E---ECTTTTTTCT-TCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred             ccccccccceeccCce-e---eccccccccc-cccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence            3456677777766542 1   1223445555 8999998776666654 5677899999998654 66656677889999


Q ss_pred             ccEEEecCccCCcceE-ecCCCCCcccEEEecc
Q 039786          103 LLEILLTGTYDYELFH-FEAGWFPKLQKLLLWD  134 (210)
Q Consensus       103 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~  134 (210)
                      |+.+.+...  ...+. ....++++|+.+.+..
T Consensus       345 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          345 LSNINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             CCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            999988522  12221 1234567888888754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.17  E-value=0.04  Score=43.35  Aligned_cols=56  Identities=18%  Similarity=0.132  Sum_probs=30.5

Q ss_pred             CCCcccEEEecccCcceeeEEc-cCCCCcccEEEeccCCCCCcccc-cccccccccceeeec
Q 039786          123 WFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCPLLMEIPI-GIEHLKNLKLLKFAG  182 (210)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~~l~~lp~-~l~~l~~L~~l~l~~  182 (210)
                      .+.+|+.+.+..  .+..+... ...+.+|+.+++...  ++.++. .+..+.+|+.+.+-.
T Consensus       295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred             cccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc
Confidence            345666666542  23322211 223567888877532  444543 456778888887744

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.91  E-value=0.073  Score=41.83  Aligned_cols=127  Identities=12%  Similarity=0.076  Sum_probs=77.3

Q ss_pred             ccccCCccCceEEEeeccCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceE-ecCCCCC
Q 039786           48 LSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFH-FEAGWFP  125 (210)
Q Consensus        48 ~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~  125 (210)
                      .+|.... +|+.+.+...+..+.. .+..+++|+.+.+.. .++..+...+.++++|+.+.+...  ...+. ....++.
T Consensus       259 ~aF~~c~-~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCA-YLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTCS-SCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred             ceeeecc-cccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence            4556665 8999998775555443 567789999999864 366666678889999999998522  12221 1234567


Q ss_pred             cccEEEecccCcceeeEE-ccCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786          126 KLQKLLLWDFIAVKSVII-EKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       126 ~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~  183 (210)
                      +|+.+.+..  .+..+.. ....+.+|+.+++.++..  . ...+....+|+.+.+...
T Consensus       335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~--~-~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS--Q-WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH--H-HHTCBCCCCC--------
T ss_pred             CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee--e-hhhhhccCCCCEEEeCCC
Confidence            899998853  2333321 234578899999987641  1 234556778888877543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.41  E-value=0.036  Score=36.50  Aligned_cols=33  Identities=30%  Similarity=0.303  Sum_probs=15.2

Q ss_pred             CceEEEeec-cCccCCh-hhhcCCCccEEEEEeec
Q 039786           56 YLQRLYLTG-NMKKLPD-WIFKLKNLIRLGLELSG   88 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~-~~~~l~~L~~L~l~~~~   88 (210)
                      +|++|+|++ .++.+|. .+..+++|+.|+|.+|.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            455555544 4444433 23344455555555444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.34  E-value=0.054  Score=38.43  Aligned_cols=86  Identities=14%  Similarity=0.159  Sum_probs=42.7

Q ss_pred             HHhhcCCCCceEEEEecCccccccc----ccccCCccCceEEEeec-cCcc-----CChhhhcCCCccEEEEEeecCCCc
Q 039786           23 GLIANLKNLESLTVEMTSKEEILDL----LSLSSPPQYLQRLYLTG-NMKK-----LPDWIFKLKNLIRLGLELSGLAEE   92 (210)
Q Consensus        23 ~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~-~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~   92 (210)
                      ..+.+-+.|++|++++++..+....    +.+..-. .|+.|+|.+ .+..     +...+..=+.|++|+|++|.|...
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            3344446677777765323322211    2233333 577777765 3332     222333345677777777776665


Q ss_pred             chhhhh----cCCCccEEEec
Q 039786           93 PIRVLQ----ASPNLLEILLT  109 (210)
Q Consensus        93 ~~~~l~----~l~~L~~L~l~  109 (210)
                      ....+.    .-+.|+.|+|+
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~  134 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKAD  134 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECC
T ss_pred             HHHHHHHHHhhCCceeEEECC
Confidence            544333    23445555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.89  E-value=0.14  Score=39.90  Aligned_cols=124  Identities=16%  Similarity=0.166  Sum_probs=80.5

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeeccCccCCh-hhhcCCCccE
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTGNMKKLPD-WIFKLKNLIR   81 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~p~-~~~~l~~L~~   81 (210)
                      ..+|+.+.+..  .....-..++..+..|+.+.+..+  ....+...+.... +|+.+.+...+..++. .+..+++|+.
T Consensus       216 ~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~-~l~~i~l~~~i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          216 GKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCT-ALKTLNFYAKVKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             CSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCT-TCCEEEECCCCSEECTTTTTTCTTCCE
T ss_pred             ccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceee-hhccccccccceecccccccccccccc
Confidence            34566666643  111111344567789999998753  3333334555565 8999999876776654 5678899999


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEe-cCCCCCcccEEEec
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHF-EAGWFPKLQKLLLW  133 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~  133 (210)
                      +.+.++.++..+..++.++++|+.+.+...  ...+.. ....+++|+.+.+.
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence            999887777766678889999999998522  122211 23445677777664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=91.70  E-value=0.17  Score=33.24  Aligned_cols=49  Identities=22%  Similarity=0.148  Sum_probs=38.6

Q ss_pred             EEEeec-cCc--cCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786           59 RLYLTG-NMK--KLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        59 ~L~l~~-~~~--~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      .++-++ .++  .+|..  -.++|++|+|++|.++..+...+..+++|+.|+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   63 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLG   63 (130)
T ss_dssp             EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred             EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence            445555 566  67743  22579999999999988888888999999999998

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.21  E-value=0.088  Score=37.34  Aligned_cols=104  Identities=14%  Similarity=0.232  Sum_probs=64.9

Q ss_pred             CCCcEEEEEec-CCCc---chHHHHhhcCCCCceEEEEecCcccccccccc----cCCccCceEEEeec-cCcc-----C
Q 039786            4 RQLRKLSIRPQ-NGNG---KDLCGLIANLKNLESLTVEMTSKEEILDLLSL----SSPPQYLQRLYLTG-NMKK-----L   69 (210)
Q Consensus         4 ~~L~~L~l~~~-~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~-~~~~-----~   69 (210)
                      +.|+.|++++. ....   ..+..++..-+.|+.|+|++|... +.....+    ..-. .|++|+|.. .+..     +
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig-d~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS-DSEARGLIELIETSP-SLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB-HHHHTTHHHHHHHCS-SCCEEECCSSBCCHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC-hHHHHHHHHHHhcCC-ccCeEecCCCcCCHHHHHHH
Confidence            57899999741 2222   245677777789999999986543 2222222    2233 799999987 5542     2


Q ss_pred             ChhhhcCCCccEEEEEeec---CCCcc----hhhhhcCCCccEEEec
Q 039786           70 PDWIFKLKNLIRLGLELSG---LAEEP----IRVLQASPNLLEILLT  109 (210)
Q Consensus        70 p~~~~~l~~L~~L~l~~~~---l~~~~----~~~l~~l~~L~~L~l~  109 (210)
                      -..+..=+.|+.|+|++|.   +....    ...+..-+.|..|+++
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~  165 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS  165 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence            2233444679999998763   33322    1234556888888886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.54
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.49
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.46
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.46
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.44
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.41
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.4
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.38
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.38
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.36
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.35
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.33
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.26
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.2
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.15
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.08
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.03
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.0
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.89
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.81
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.53
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.37
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.5
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.01
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.28
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.13
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.64

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.7e-16  Score=118.13  Aligned_cols=174  Identities=20%  Similarity=0.147  Sum_probs=128.8

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEE
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRL   82 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L   82 (210)
                      ++|++|++++ +....-.+.+++++++|++|++++|... .  +..+..++ +|++|++++ .++..+..+..+++|+.|
T Consensus        31 ~~l~~L~Ls~-N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~--l~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          31 KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELT-K--LQVDGTLP-VLGTLDLSHNQLQSLPLLGQTLPALTVL  105 (266)
T ss_dssp             TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCC-E--EECCSCCT-TCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred             cCCCEEECcC-CcCCCcCHHHhhcccccccccccccccc-c--cccccccc-cccccccccccccccccccccccccccc
Confidence            4788999885 2222222456888999999999886543 2  23345566 899999988 777777788888999999


Q ss_pred             EEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEeccCCC
Q 039786           83 GLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCPL  161 (210)
Q Consensus        83 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~~  161 (210)
                      ++++|.+.......+..+++++.|.+..+............+++++.+++.++. +..++.. .+.+++|++|++++|. 
T Consensus       106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-  183 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-  183 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-
T ss_pred             cccccccceeeccccccccccccccccccccceeccccccccccchhccccccc-ccccCccccccccccceeecccCC-
Confidence            999988777666777888999999987432222112223457889999998764 4444432 4568999999999998 


Q ss_pred             CCcccccccccccccceeeecch
Q 039786          162 LMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       162 l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ++.+|.++..+++|+.|++.++|
T Consensus       184 L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         184 LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CcccChhHCCCCCCCEEEecCCC
Confidence            88999999999999999999854

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.61  E-value=1.3e-15  Score=115.85  Aligned_cols=180  Identities=19%  Similarity=0.101  Sum_probs=102.2

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCc-cCChhhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~~p~~~~~l~~L   79 (210)
                      +|++|++|++++++...+.+|++++++++|++|++++|......+ ..+..+. +|+.+++.. .+. .+|.+++.++.|
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~-~L~~l~l~~N~~~~~~p~~l~~l~~L  151 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             cCccccccccccccccccccccccccccccchhhhcccccccccc-ccccchh-hhcccccccccccccCchhhccCccc
Confidence            456666666653112233455566666666666666654333221 2233333 566666654 222 356666666777


Q ss_pred             cEEEEEeecCCCcchhhhhcCCCc-cEEEecCc-cC----------------------CcceEecCCCCCcccEEEeccc
Q 039786           80 IRLGLELSGLAEEPIRVLQASPNL-LEILLTGT-YD----------------------YELFHFEAGWFPKLQKLLLWDF  135 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~~L-~~L~l~~~-~~----------------------~~~~~~~~~~~~~L~~L~l~~~  135 (210)
                      +++++++|.+....+..+..++.+ +.+.++.. ..                      ...++.....+++++.+++.++
T Consensus       152 ~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             ceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            777776666544434445555444 44443311 00                      0001111234466777776655


Q ss_pred             CcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          136 IAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       136 ~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      .. ...+...+.+++|+.|++++|.....+|..++.+++|++|+++++.
T Consensus       232 ~l-~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         232 SL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EE-CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cc-cccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            42 2222345568899999999998545899999999999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.9e-14  Score=107.78  Aligned_cols=175  Identities=15%  Similarity=0.092  Sum_probs=120.3

Q ss_pred             CCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCccc------------------------ccccccccCCccCceE
Q 039786            5 QLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEE------------------------ILDLLSLSSPPQYLQR   59 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~------------------------~~~~~~~~~~~~~L~~   59 (210)
                      ++++|++++  .....++ .++.++++|++|+++++....                        ..+...+..++ +|++
T Consensus        33 ~~~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~-~L~~  109 (284)
T d1ozna_          33 ASQRIFLHG--NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHT  109 (284)
T ss_dssp             TCSEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT-TCCE
T ss_pred             CCCEEECcC--CcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccc-cCCE
Confidence            678888885  2233333 467888899999998754311                        11112334455 7888


Q ss_pred             EEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceE-ecCCCCCcccEEEecccC
Q 039786           60 LYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFH-FEAGWFPKLQKLLLWDFI  136 (210)
Q Consensus        60 L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~  136 (210)
                      |++.+ .+..++ ..+..+++|+.+++.+|.++..+...+..+++|+.|+++++.- ..+. ....++++|+.+.+.++.
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l-~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSC
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc-cccchhhhccccccchhhhhhcc
Confidence            88887 555543 3566778899999999888877777788889999999874432 2222 223556788999988765


Q ss_pred             cceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecc
Q 039786          137 AVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       137 ~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~  183 (210)
                      .....+.....+++|++|++++|...+..+..++.+++|++|++.++
T Consensus       189 l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            43322334556789999999999844444556788999999999884

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=2.4e-14  Score=102.70  Aligned_cols=164  Identities=21%  Similarity=0.293  Sum_probs=110.5

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccE
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIR   81 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~   81 (210)
                      |.+|++|++++  .....+ ..+..+++|++|++++|....   +..+..++ +|++|++.+ .++.+| .+..+++|+.
T Consensus        45 L~~L~~L~l~~--~~i~~l-~~l~~l~~L~~L~L~~n~i~~---l~~~~~l~-~L~~L~l~~n~i~~l~-~l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIANN--SDIKSV-QGIQYLPNVTKLFLNGNKLTD---IKPLANLK-NLGWLFLDENKVKDLS-SLKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECTT--SCCCCC-TTGGGCTTCCEEECCSSCCCC---CGGGTTCT-TCCEEECCSSCCCCGG-GGTTCTTCCE
T ss_pred             hcCccEEECcC--CCCCCc-hhHhhCCCCCEEeCCCccccC---ccccccCc-cccccccccccccccc-cccccccccc
Confidence            45778888775  222222 246778888888888764322   23345565 788888877 777776 4677888888


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCC
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPL  161 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~  161 (210)
                      |++.+|.+..  +..+..++.++.++++.+.... . .....+++|+.+++.++. +..++ ....+++|+.|++++|. 
T Consensus       117 L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~-~-~~~~~l~~L~~l~l~~n~-l~~i~-~l~~l~~L~~L~Ls~N~-  189 (210)
T d1h6ta2         117 LSLEHNGISD--INGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNH-  189 (210)
T ss_dssp             EECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC-
T ss_pred             cccccccccc--cccccccccccccccccccccc-c-cccccccccccccccccc-ccccc-cccCCCCCCEEECCCCC-
Confidence            8888887654  4467788888888886332111 1 123456788888888764 33332 24568888999998886 


Q ss_pred             CCcccccccccccccceeeec
Q 039786          162 LMEIPIGIEHLKNLKLLKFAG  182 (210)
Q Consensus       162 l~~lp~~l~~l~~L~~l~l~~  182 (210)
                      ++.+| .+..+++|++|++++
T Consensus       190 i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         190 ISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCBCG-GGTTCTTCSEEEEEE
T ss_pred             CCCCh-hhcCCCCCCEEEccC
Confidence            67776 578888888888864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.6e-15  Score=112.69  Aligned_cols=179  Identities=18%  Similarity=0.220  Sum_probs=123.3

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCcc--CChhhhcCCC
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKK--LPDWIFKLKN   78 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~--~p~~~~~l~~   78 (210)
                      ..+|++|+++++......+...+.++++|++|++.+|.. ....+..+...+ +|++|++.+  .++.  +......+++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l-~~~~~~~l~~~~-~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL-SDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC-CHHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCC-CcHHHHHHhcCC-CCcCccccccccccccccchhhHHHHh
Confidence            468899999852223455566788899999999998753 222334556666 899999987  3442  3333467899


Q ss_pred             ccEEEEEeec-CCCcchh-hhh-cCCCccEEEecCcc-C--CcceEecCCCCCcccEEEecccCcceee-EEccCCCCcc
Q 039786           79 LIRLGLELSG-LAEEPIR-VLQ-ASPNLLEILLTGTY-D--YELFHFEAGWFPKLQKLLLWDFIAVKSV-IIEKGAVPDI  151 (210)
Q Consensus        79 L~~L~l~~~~-l~~~~~~-~l~-~l~~L~~L~l~~~~-~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L  151 (210)
                      |++|++++|. +++.... .+. ..++|+.|+++.+. .  ...+......+|+|+.|++.+|..+... ......+++|
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            9999999986 6554443 333 35789999997442 1  1112222345789999999988766532 2234568999


Q ss_pred             cEEEeccCCCCCc-ccccccccccccceeeecc
Q 039786          152 RELRIGPCPLLME-IPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       152 ~~L~i~~~~~l~~-lp~~l~~l~~L~~l~l~~~  183 (210)
                      ++|++.+|..++. ....+..+++|++|++.+|
T Consensus       203 ~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            9999999986652 3344677899999999987

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=1.6e-13  Score=97.50  Aligned_cols=140  Identities=18%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             hhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCc
Q 039786           25 IANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNL  103 (210)
Q Consensus        25 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L  103 (210)
                      ++.+++|++|++++|....   +..+..++ +|++|++.+ .+..++ .++.++.|+.|++.+|....  ...+..+++|
T Consensus        58 l~~l~nL~~L~Ls~N~l~~---~~~l~~l~-~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~L  130 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTD---ITPLKNLT-KLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITD--IDPLKNLTNL  130 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCC---CGGGTTCT-TCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC--CGGGTTCTTC
T ss_pred             cccCCCcCcCccccccccC---cccccCCc-cccccccccccccccc-cccccccccccccccccccc--ccccchhhhh
Confidence            4455555555555542211   11233444 555555554 333343 24455555555555554332  2234455555


Q ss_pred             cEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccc
Q 039786          104 LEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKL  177 (210)
Q Consensus       104 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~  177 (210)
                      +.|+++++.. ..+ .....+++++.|.+.++. +..++ ..+.+++|++|++++|. ++.++ .++.+++|++
T Consensus       131 ~~L~l~~n~l-~~~-~~l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~~L~ls~N~-i~~i~-~l~~L~~L~~  198 (199)
T d2omxa2         131 NRLELSSNTI-SDI-SALSGLTSLQQLNFSSNQ-VTDLK-PLANLTTLERLDISSNK-VSDIS-VLAKLTNLES  198 (199)
T ss_dssp             SEEECCSSCC-CCC-GGGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSE
T ss_pred             HHhhhhhhhh-ccc-cccccccccccccccccc-ccCCc-cccCCCCCCEEECCCCC-CCCCc-cccCCCCCCc
Confidence            5555542211 111 122344555555555432 22221 12345555555555554 44443 3444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=9.5e-14  Score=100.64  Aligned_cols=166  Identities=17%  Similarity=0.180  Sum_probs=98.6

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccE
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIR   81 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~   81 (210)
                      |.+|++|++.+  .....+ +.++++++|++|++++|.....   ..+..++ +++++.+.+ .++.++ .+..+++|+.
T Consensus        40 l~~L~~L~l~~--~~i~~l-~~l~~l~~L~~L~ls~n~i~~~---~~l~~l~-~l~~l~~~~n~~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          40 LDGITTLSAFG--TGVTTI-EGVQYLNNLIGLELKDNQITDL---APLKNLT-KITELELSGNPLKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHTCCEEECTT--SCCCCC-TTGGGCTTCCEEECCSSCCCCC---GGGTTCC-SCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred             cCCcCEEECCC--CCCCcc-hhHhcCCCCcEeecCCceeecc---ccccccc-cccccccccccccccc-cccccccccc
Confidence            56788888875  222333 4578888888888887644332   2355555 788888877 566665 4667788888


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCC
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPL  161 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~  161 (210)
                      +++++|....  ...+...+.+..+.++++.....  .....+++|+.|.+.++... .. ...+.+++|++|++++|. 
T Consensus       112 l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~Ls~n~-  184 (227)
T d1h6ua2         112 LDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNK-  184 (227)
T ss_dssp             EECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC-CC-GGGTTCTTCCEEECCSSC-
T ss_pred             cccccccccc--cchhccccchhhhhchhhhhchh--hhhccccccccccccccccc-cc-hhhcccccceecccCCCc-
Confidence            8887775433  23445566666666653321111  12234566677766655321 11 123456677777777664 


Q ss_pred             CCcccccccccccccceeeecch
Q 039786          162 LMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       162 l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ++.++ .+..+++|++|++++|.
T Consensus       185 l~~l~-~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         185 ISDIS-PLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             CCCCG-GGGGCTTCCEEECTTSC
T ss_pred             cCCCh-hhcCCCCCCEEECcCCc
Confidence            55554 35666777777776664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.1e-14  Score=104.52  Aligned_cols=173  Identities=20%  Similarity=0.088  Sum_probs=123.4

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccE
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIR   81 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~   81 (210)
                      ...+.+++.++  .....+|+.+.  ++++.|++++|.. ...+...+..++ +|++|++.+ .++.+|. ++.+++|++
T Consensus         9 ~~~~~~v~C~~--~~L~~iP~~lp--~~l~~L~Ls~N~i-~~l~~~~f~~l~-~L~~L~L~~N~l~~l~~-~~~l~~L~~   81 (266)
T d1p9ag_           9 VASHLEVNCDK--RNLTALPPDLP--KDTTILHLSENLL-YTFSLATLMPYT-RLTQLNLDRAELTKLQV-DGTLPVLGT   81 (266)
T ss_dssp             STTCCEEECTT--SCCSSCCSCCC--TTCCEEECTTSCC-SEEEGGGGTTCT-TCCEEECTTSCCCEEEC-CSCCTTCCE
T ss_pred             cCCCeEEEccC--CCCCeeCcCcC--cCCCEEECcCCcC-CCcCHHHhhccc-ccccccccccccccccc-ccccccccc
Confidence            34455555543  23334444332  5899999998644 444445677787 999999998 7888773 578999999


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEeccCC
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPCP  160 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~  160 (210)
                      |++++|.++.. ...+..+++|++|+++.+............+++++.|.+.++. +..++.. ...+++|+.+++.+|.
T Consensus        82 L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          82 LDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccc-ccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhccccccc
Confidence            99999998664 4467889999999998544333233344567889999998764 3444332 2457899999999997


Q ss_pred             CCCcccc-cccccccccceeeecchH
Q 039786          161 LLMEIPI-GIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       161 ~l~~lp~-~l~~l~~L~~l~l~~~~~  185 (210)
                       ++.+|. .+..+++|++|+++++..
T Consensus       160 -l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         160 -LTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             -CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             -ccccCccccccccccceeecccCCC
Confidence             666654 468899999999999753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=4.4e-13  Score=97.05  Aligned_cols=165  Identities=18%  Similarity=0.239  Sum_probs=122.1

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      +|++|++|++++ .. ...+ ..++.+++++.++++++...   .+..+..++ +|+.+.+.+ ....++ .+...+.++
T Consensus        61 ~l~~L~~L~ls~-n~-i~~~-~~l~~l~~l~~l~~~~n~~~---~i~~l~~l~-~L~~l~l~~~~~~~~~-~~~~~~~~~  132 (227)
T d1h6ua2          61 YLNNLIGLELKD-NQ-ITDL-APLKNLTKITELELSGNPLK---NVSAIAGLQ-SIKTLDLTSTQITDVT-PLAGLSNLQ  132 (227)
T ss_dssp             GCTTCCEEECCS-SC-CCCC-GGGTTCCSCCEEECCSCCCS---CCGGGTTCT-TCCEEECTTSCCCCCG-GGTTCTTCC
T ss_pred             cCCCCcEeecCC-ce-eecc-cccccccccccccccccccc---ccccccccc-cccccccccccccccc-hhccccchh
Confidence            689999999996 22 2222 23789999999999886543   234566676 899999987 444443 456678999


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      .+.+.++.+..  ...+..+++|+.|.+.++....  ......+++|+.|++.++. +..++ ..+.+++|++|++++|.
T Consensus       133 ~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~Ls~n~-l~~l~-~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         133 VLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             EEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECTTSC
T ss_pred             hhhchhhhhch--hhhhcccccccccccccccccc--chhhcccccceecccCCCc-cCCCh-hhcCCCCCCEEECcCCc
Confidence            99998887655  3457789999999998543222  1235678999999999874 55543 24578999999999996


Q ss_pred             CCCcccccccccccccceeeec
Q 039786          161 LLMEIPIGIEHLKNLKLLKFAG  182 (210)
Q Consensus       161 ~l~~lp~~l~~l~~L~~l~l~~  182 (210)
                       ++.++ .++.+++|+.|++++
T Consensus       207 -lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         207 -ISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -CCBCG-GGTTCTTCCEEEEEE
T ss_pred             -CCCCc-ccccCCCCCEEEeeC
Confidence             78777 478999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.41  E-value=3.6e-13  Score=101.64  Aligned_cols=37  Identities=22%  Similarity=0.442  Sum_probs=28.3

Q ss_pred             CCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          147 AVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       147 ~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      .+++|++|++++|. ++.+|.++..+++|++|+++++.
T Consensus       217 ~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         217 NTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             GSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred             ccccceeeeccccc-ccccccccccccCCCEEECCCCc
Confidence            45778888888876 67777777788888888887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=5.2e-13  Score=94.78  Aligned_cols=147  Identities=12%  Similarity=0.177  Sum_probs=113.2

Q ss_pred             hcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCcc
Q 039786           26 ANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLL  104 (210)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  104 (210)
                      +.+.++++|++.++....   ++++..++ +|++|++++ .++.++. ++.+++|++|++..|.+...  ..+++++.|+
T Consensus        37 ~~l~~l~~L~l~~~~i~~---l~~l~~l~-nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~  109 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS---IDGVEYLN-NLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI--TPLANLTNLT  109 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC---CTTGGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             HHhcCCCEEECCCCCCCC---ccccccCC-CcCcCccccccccCccc-ccCCcccccccccccccccc--cccccccccc
Confidence            456889999998865432   34566677 999999998 7887774 88999999999999986553  4688999999


Q ss_pred             EEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          105 EILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       105 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      .|+++++....  ......+++|+.+++.++. +..++ ....+++|+.|++.+|. ++.++ .++.+++|++|+++++.
T Consensus       110 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         110 GLTLFNNQITD--IDPLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQ-VTDLK-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             EEECCSSCCCC--CGGGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccc--ccccchhhhhHHhhhhhhh-hcccc-ccccccccccccccccc-ccCCc-cccCCCCCCEEECCCCC
Confidence            99998554322  1235678999999998764 33332 35678999999999987 66665 47899999999999985


Q ss_pred             H
Q 039786          185 K  185 (210)
Q Consensus       185 ~  185 (210)
                      .
T Consensus       184 i  184 (199)
T d2omxa2         184 V  184 (199)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8.4e-13  Score=98.68  Aligned_cols=152  Identities=15%  Similarity=0.084  Sum_probs=97.0

Q ss_pred             CCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC--------------------------hhhhcCCCccE
Q 039786           29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP--------------------------DWIFKLKNLIR   81 (210)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p--------------------------~~~~~l~~L~~   81 (210)
                      +++++|+|++|.. ...+...+..++ +|++|++.+ .+..++                          ..+..+++|++
T Consensus        32 ~~~~~L~Ls~N~i-~~i~~~~f~~l~-~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGNRI-SHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTSCC-CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCcC-CCCCHHHhhccc-cccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            5789999998654 444445677777 899999876 543322                          23345566777


Q ss_pred             EEEEeecCCCcchhhhhcCCCccEEEecCccCCcceE-ecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEEeccC
Q 039786           82 LGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFH-FEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELRIGPC  159 (210)
Q Consensus        82 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~  159 (210)
                      |++..|.+.......++.+++|+.++++...- ..++ .....+++|+.|++.++. +..++.. ...+++|+.+++.+|
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l-~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             EecCCcccccccccccchhcccchhhhccccc-cccChhHhccccchhhcccccCc-ccccchhhhccccccchhhhhhc
Confidence            77777665555455556667777777662221 1121 123455678888887664 4444322 235678888888888


Q ss_pred             CCCCcccccccccccccceeeecch
Q 039786          160 PLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       160 ~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                      ......|..+..+++|++|+++++.
T Consensus       188 ~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         188 RVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cccccChhHhhhhhhcccccccccc
Confidence            7444446777888899999988864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=3.7e-13  Score=96.36  Aligned_cols=146  Identities=16%  Similarity=0.216  Sum_probs=109.5

Q ss_pred             cCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccE
Q 039786           27 NLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLE  105 (210)
Q Consensus        27 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  105 (210)
                      .+.+|++|++.++....   +.++..++ +|++|++++ .++.++ .++.+++|++|++++|.++.  +..+..+++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~---l~~l~~l~-~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~--l~~l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS---VQGIQYLP-NVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD--LSSLKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCC---CTTGGGCT-TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC--GGGGTTCTTCCE
T ss_pred             HhcCccEEECcCCCCCC---chhHhhCC-CCCEEeCCCccccCcc-ccccCccccccccccccccc--cccccccccccc
Confidence            45688899998764433   33456666 999999999 788877 46889999999999999876  446889999999


Q ss_pred             EEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecchH
Q 039786          106 ILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       106 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~~  185 (210)
                      |++.++.... + .....++.++.+.+.++.. .... ....+++|+.+++.+|. ++.++ .+..+++|++|+++++..
T Consensus       117 L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l-~~~~-~~~~l~~L~~l~l~~n~-l~~i~-~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         117 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKI-TDIT-VLSRLTKLDTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             EECTTSCCCC-C-GGGGGCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             cccccccccc-c-ccccccccccccccccccc-cccc-ccccccccccccccccc-ccccc-cccCCCCCCEEECCCCCC
Confidence            9998543222 1 1345567889998876542 2222 24468999999999997 66665 478899999999998854

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=1.3e-12  Score=101.19  Aligned_cols=167  Identities=17%  Similarity=0.196  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      .+++++.+++++  .....+. ..+..++|+.|++.+|....   +..+..++ +|+.|++.+ .++.++ .++.+++|+
T Consensus       195 ~l~~~~~l~l~~--n~i~~~~-~~~~~~~L~~L~l~~n~l~~---~~~l~~l~-~L~~L~l~~n~l~~~~-~~~~~~~L~  266 (384)
T d2omza2         195 KLTNLESLIATN--NQISDIT-PLGILTNLDELSLNGNQLKD---IGTLASLT-NLTDLDLANNQISNLA-PLSGLTKLT  266 (384)
T ss_dssp             GCTTCSEEECCS--SCCCCCG-GGGGCTTCCEEECCSSCCCC---CGGGGGCT-TCSEEECCSSCCCCCG-GGTTCTTCS
T ss_pred             cccccceeeccC--CccCCCC-cccccCCCCEEECCCCCCCC---cchhhccc-ccchhccccCccCCCC-cccccccCC
Confidence            356666776664  1112221 23555677777776653322   22344444 667777666 555554 355566777


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      .|+++++.++..  ..+..++.++.+.+..+.... + .....+++++.+++.++. +..++ ....+++|++|++.+|.
T Consensus       267 ~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~-l~~l~-~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         267 ELKLGANQISNI--SPLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNN-ISDIS-PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSC-CSCCG-GGGGCTTCCEEECCSSC
T ss_pred             EeeccCcccCCC--Ccccccccccccccccccccc-c-cccchhcccCeEECCCCC-CCCCc-ccccCCCCCEEECCCCC
Confidence            777766665442  234455555555554221111 1 112334555555555442 22221 12345555555555554


Q ss_pred             CCCcccccccccccccceeeecch
Q 039786          161 LLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       161 ~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                       ++.++ ++..+++|++|+++++.
T Consensus       341 -l~~l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         341 -VSDVS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             -CCCCG-GGGGCTTCCEEECCSSC
T ss_pred             -CCCCh-hHcCCCCCCEEECCCCc
Confidence             44443 35555555555555543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.36  E-value=1.9e-12  Score=97.92  Aligned_cols=178  Identities=18%  Similarity=0.182  Sum_probs=121.0

Q ss_pred             CCCcEEEEEe-cCCCcchHHHHhhcCCCCceEEEEecC-cccccccccccCCccCceEEEeec-cCcc-CChhhhcCCCc
Q 039786            4 RQLRKLSIRP-QNGNGKDLCGLIANLKNLESLTVEMTS-KEEILDLLSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNL   79 (210)
Q Consensus         4 ~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~p~~~~~l~~L   79 (210)
                      .+++.|++++ .......++++++++++|++|++++++ ..+..+ ..+..++ +|++|++++ .+.. .+..+..++.|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP-~~i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccc-ccccccc-ccchhhhccccccccccccccchhhh
Confidence            3688899986 222233577899999999999998754 333333 4577777 999999998 6776 45567889999


Q ss_pred             cEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcc-cEEEecccC----------------------
Q 039786           80 IRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKL-QKLLLWDFI----------------------  136 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~----------------------  136 (210)
                      +++++..|.+....+..++.++.++.++++++.....++.....++.+ +.+.+.++.                      
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~  207 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN  207 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999998766666789999999999998443222222222333333 444433221                      


Q ss_pred             -cceeeEEccCCCCcccEEEeccCCCCCcccccccccccccceeeecch
Q 039786          137 -AVKSVIIEKGAVPDIRELRIGPCPLLMEIPIGIEHLKNLKLLKFAGMV  184 (210)
Q Consensus       137 -~l~~~~~~~~~~~~L~~L~i~~~~~l~~lp~~l~~l~~L~~l~l~~~~  184 (210)
                       .....+...+.+++++.+++.+|. +...+..+..+++|+.|+++++.
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~~~~~~~~~~L~~L~Ls~N~  255 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccccccccCccCe
Confidence             111112223456888999988887 44445567888999999998864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=2.1e-12  Score=97.38  Aligned_cols=108  Identities=13%  Similarity=-0.028  Sum_probs=72.6

Q ss_pred             CCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEE
Q 039786           76 LKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELR  155 (210)
Q Consensus        76 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  155 (210)
                      +++|+.|++.+|.........+.+++.+++|+++++............+++|++|++.++. +..++.....+++|++|+
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVY  248 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEE
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc-ccccccccccccCCCEEE
Confidence            3556666666555544445566677777777776332222112223456899999999874 566665666799999999


Q ss_pred             eccCCCCCccccc-------ccccccccceeeecchH
Q 039786          156 IGPCPLLMEIPIG-------IEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       156 i~~~~~l~~lp~~-------l~~l~~L~~l~l~~~~~  185 (210)
                      +++|. ++.++..       .....+|+.+++.+++.
T Consensus       249 Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         249 LHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCCCc-cCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            99987 7766543       23568899999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-13  Score=103.60  Aligned_cols=157  Identities=20%  Similarity=0.191  Sum_probs=111.0

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccc-cCCccCceEEEeec--cCcc--CChhhh-c
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSL-SSPPQYLQRLYLTG--NMKK--LPDWIF-K   75 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~--~~~~--~p~~~~-~   75 (210)
                      ++++|++|++++ ....+.....++++++|++|++++|.......+..+ ..++ +|++|++.+  .++.  ++..+. .
T Consensus        69 ~c~~L~~L~L~~-~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~-~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          69 QCSKLQNLSLEG-LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             TBCCCSEEECTT-CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             hCCCcccccccc-cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH-hccccccccccccccccchhhhccc
Confidence            678999999986 445567778899999999999998876554433333 2345 899999987  3332  332333 3


Q ss_pred             CCCccEEEEEeec--CCCcchhhh-hcCCCccEEEecCccCC-cceEecCCCCCcccEEEecccCcceeeE-EccCCCCc
Q 039786           76 LKNLIRLGLELSG--LAEEPIRVL-QASPNLLEILLTGTYDY-ELFHFEAGWFPKLQKLLLWDFIAVKSVI-IEKGAVPD  150 (210)
Q Consensus        76 l~~L~~L~l~~~~--l~~~~~~~l-~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~  150 (210)
                      .++|+.|++.+|.  ++...+..+ ..+|+|++|+++.|... +........+++|+.|++.+|..+.... ...+.+++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            5799999999863  555555544 47899999999865432 2222334568999999999998765322 22356899


Q ss_pred             ccEEEeccCC
Q 039786          151 IRELRIGPCP  160 (210)
Q Consensus       151 L~~L~i~~~~  160 (210)
                      |+.|++.+|.
T Consensus       227 L~~L~l~~~~  236 (284)
T d2astb2         227 LKTLQVFGIV  236 (284)
T ss_dssp             CCEEECTTSS
T ss_pred             CCEEeeeCCC
Confidence            9999999884

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.5e-13  Score=92.53  Aligned_cols=125  Identities=13%  Similarity=0.084  Sum_probs=86.1

Q ss_pred             CceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEec-CCCCCcccEEEec
Q 039786           56 YLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFE-AGWFPKLQKLLLW  133 (210)
Q Consensus        56 ~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~  133 (210)
                      ++++|++++ .++.+|.....+++|++|++++|.++..  ..++.+++|+.|+++++... .+... ...+++|+.|++.
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccccccceec
Confidence            688888888 7777776667778888888888877653  45677888888888744322 22211 2356788888887


Q ss_pred             ccCcceeeE--EccCCCCcccEEEeccCCCCCcccc----cccccccccceeeecchH
Q 039786          134 DFIAVKSVI--IEKGAVPDIRELRIGPCPLLMEIPI----GIEHLKNLKLLKFAGMVK  185 (210)
Q Consensus       134 ~~~~l~~~~--~~~~~~~~L~~L~i~~~~~l~~lp~----~l~~l~~L~~l~l~~~~~  185 (210)
                      ++. +..++  .....+++|++|++.+|+ +...|.    .+..+++|+.|+-.....
T Consensus        96 ~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~~i~~  151 (162)
T d1a9na_          96 NNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  151 (162)
T ss_dssp             SCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ccc-ccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCCCCCH
Confidence            764 22222  123468999999999998 555553    467889999998776554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.6e-11  Score=85.98  Aligned_cols=174  Identities=16%  Similarity=0.158  Sum_probs=107.5

Q ss_pred             CCCcEEEEEecCCCcchHH-HHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec--cCcc-CChhhhcCCCc
Q 039786            4 RQLRKLSIRPQNGNGKDLC-GLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG--NMKK-LPDWIFKLKNL   79 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~-~p~~~~~l~~L   79 (210)
                      +++++|++++  .....++ .++.++++|++|++++|......+...+..++ +++++.+..  .+.. .+.++..+++|
T Consensus        29 ~~l~~L~Ls~--n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~-~l~~l~~~~~n~l~~~~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVL--TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEES--CCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT-TCCEEEEECCTTCCEECTTSEECCTTC
T ss_pred             CCCCEEECcC--CcCCccChhHhhccchhhhhhhccccccceeecccccccc-ccccccccccccccccccccccccccc
Confidence            3789999986  2223333 45788999999999987665555555666676 788887754  4544 44567889999


Q ss_pred             cEEEEEeecCCCcch-hhhhcCCCccEEEecCccCCcceEecCCCC----CcccEEEecccCcceeeEEccCCCCcccEE
Q 039786           80 IRLGLELSGLAEEPI-RVLQASPNLLEILLTGTYDYELFHFEAGWF----PKLQKLLLWDFIAVKSVIIEKGAVPDIREL  154 (210)
Q Consensus        80 ~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  154 (210)
                      +++++.+|.+...+. .....++.+..+...+.. ..  .+....|    ..++.+++.++ .+..++......++++.+
T Consensus       106 ~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~-l~--~i~~~~~~~~~~~l~~L~l~~n-~l~~i~~~~~~~~~l~~~  181 (242)
T d1xwdc1         106 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN-IH--TIERNSFVGLSFESVILWLNKN-GIQEIHNCAFNGTQLDEL  181 (242)
T ss_dssp             CEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT-CC--EECTTSSTTSBSSCEEEECCSS-CCCEECTTTTTTCCEEEE
T ss_pred             cccccchhhhcccccccccccccccccccccccc-cc--cccccccccccccceeeecccc-cccccccccccchhhhcc
Confidence            999999998765432 223344444444433221 11  1222222    25566766543 244444333345566666


Q ss_pred             EeccCCCCCccccc-ccccccccceeeecch
Q 039786          155 RIGPCPLLMEIPIG-IEHLKNLKLLKFAGMV  184 (210)
Q Consensus       155 ~i~~~~~l~~lp~~-l~~l~~L~~l~l~~~~  184 (210)
                      ....+..++.+|.. +..+++|++|+++++.
T Consensus       182 ~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         182 NLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             ECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             ccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            65555557777665 4778888888887764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=1.8e-11  Score=94.62  Aligned_cols=166  Identities=22%  Similarity=0.243  Sum_probs=121.6

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCcc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLI   80 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~   80 (210)
                      .+++|++|++++  ..... .+.++.+++|+.+++.+|.....   ..+..++ +|+.|++.+ .++.++ .+..++.++
T Consensus       217 ~~~~L~~L~l~~--n~l~~-~~~l~~l~~L~~L~l~~n~l~~~---~~~~~~~-~L~~L~l~~~~l~~~~-~~~~~~~l~  288 (384)
T d2omza2         217 ILTNLDELSLNG--NQLKD-IGTLASLTNLTDLDLANNQISNL---APLSGLT-KLTELKLGANQISNIS-PLAGLTALT  288 (384)
T ss_dssp             GCTTCCEEECCS--SCCCC-CGGGGGCTTCSEEECCSSCCCCC---GGGTTCT-TCSEEECCSSCCCCCG-GGTTCTTCS
T ss_pred             ccCCCCEEECCC--CCCCC-cchhhcccccchhccccCccCCC---Ccccccc-cCCEeeccCcccCCCC-ccccccccc
Confidence            357899999986  22222 24578889999999998654433   2355566 899999988 777776 466788999


Q ss_pred             EEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEccCCCCcccEEEeccCC
Q 039786           81 RLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIEKGAVPDIRELRIGPCP  160 (210)
Q Consensus        81 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~~~  160 (210)
                      .+++..|.+..  +..+..+++++.|+++.+... .+. ....+++|++|++.+|. +..++ ..+.+++|++|++++|.
T Consensus       289 ~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~-~l~-~l~~l~~L~~L~L~~n~-l~~l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         289 NLELNENQLED--ISPISNLKNLTYLTLYFNNIS-DIS-PVSSLTKLQRLFFANNK-VSDVS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             EEECCSSCCSC--CGGGGGCTTCSEEECCSSCCS-CCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECCSSC
T ss_pred             ccccccccccc--ccccchhcccCeEECCCCCCC-CCc-ccccCCCCCEEECCCCC-CCCCh-hHcCCCCCCEEECCCCc
Confidence            99999888765  446788999999999844222 221 35678999999999874 44443 35568999999999887


Q ss_pred             CCCcccccccccccccceeeecc
Q 039786          161 LLMEIPIGIEHLKNLKLLKFAGM  183 (210)
Q Consensus       161 ~l~~lp~~l~~l~~L~~l~l~~~  183 (210)
                       ++.++. +..+++|++|+++++
T Consensus       363 -l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         363 -ISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CCBCGG-GTTCTTCSEEECCCE
T ss_pred             -CCCChh-hccCCCCCEeeCCCC
Confidence             676663 788999999998764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7.5e-11  Score=85.67  Aligned_cols=177  Identities=18%  Similarity=0.154  Sum_probs=113.4

Q ss_pred             CCCCCcEEEEEecCCCcchH-HHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCCh--hhhcCC
Q 039786            2 KLRQLRKLSIRPQNGNGKDL-CGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPD--WIFKLK   77 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~--~~~~l~   77 (210)
                      ++++|++|++++ ......+ ...+..+++++.+.+..++.....+...+..++ +|+++.+.+ .+...+.  +...++
T Consensus        51 ~l~~L~~L~ls~-n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~-~L~~l~l~~~~l~~~~~~~~~~~l~  128 (242)
T d1xwdc1          51 GFGDLEKIEISQ-NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQ  128 (242)
T ss_dssp             TCTTCCEEEEES-CTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCT-TCCEEEEESCCCCSCCCCTTTCBSS
T ss_pred             ccchhhhhhhcc-ccccceeeccccccccccccccccccccccccccccccccc-cccccccchhhhccccccccccccc
Confidence            589999999996 2222222 345678899999999876655555556677777 999999998 6766553  233445


Q ss_pred             CccEEEEEeecCCCcchhhhhcC-CCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeEEc-cCCCCcccEEE
Q 039786           78 NLIRLGLELSGLAEEPIRVLQAS-PNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVIIE-KGAVPDIRELR  155 (210)
Q Consensus        78 ~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~  155 (210)
                      .+..+...++.+...+...+.++ ..+..|++.+.. ...+.......+++..+....+..+..++.. ...+++|+.|+
T Consensus       129 ~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~  207 (242)
T d1xwdc1         129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  207 (242)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEE
T ss_pred             ccccccccccccccccccccccccccceeeeccccc-ccccccccccchhhhccccccccccccccHHHhcCCCCCCEEE
Confidence            55544444545555554555555 477888876332 1223222223355666655555556666543 35689999999


Q ss_pred             eccCCCCCccccc-ccccccccceeeec
Q 039786          156 IGPCPLLMEIPIG-IEHLKNLKLLKFAG  182 (210)
Q Consensus       156 i~~~~~l~~lp~~-l~~l~~L~~l~l~~  182 (210)
                      +.+|. ++.+|.. +..+++|+.+++.+
T Consensus       208 Ls~N~-l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         208 ISRTR-IHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CTTSC-CCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCCc-CCccCHHHHcCCcccccCcCCC
Confidence            99988 7777664 56777777776654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1e-11  Score=85.13  Aligned_cols=103  Identities=17%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             CCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChh-hhcCCCcc
Q 039786            3 LRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNLI   80 (210)
Q Consensus         3 L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~-~~~l~~L~   80 (210)
                      ..+||+|++++  .....++..+..+++|++|++++|....   ++.+..++ +|++|++++ .++.+|.. +..+++|+
T Consensus        17 ~~~lr~L~L~~--n~I~~i~~~~~~l~~L~~L~Ls~N~i~~---l~~~~~l~-~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          17 AVRDRELDLRG--YKIPVIENLGATLDQFDAIDFSDNEIRK---LDGFPLLR-RLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             TTSCEEEECTT--SCCCSCCCGGGGTTCCSEEECCSSCCCE---ECCCCCCS-SCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcEEECCC--CCCCccCccccccccCCEEECCCCCCCc---cCCcccCc-chhhhhcccccccCCCccccccccccc
Confidence            45677777775  2223333344566777777777754322   23455565 777777777 66666543 35677777


Q ss_pred             EEEEEeecCCCcc-hhhhhcCCCccEEEecCc
Q 039786           81 RLGLELSGLAEEP-IRVLQASPNLLEILLTGT  111 (210)
Q Consensus        81 ~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~  111 (210)
                      +|++++|.++..+ +..+..+++|++|+++++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             cceeccccccccccccccccccccchhhcCCC
Confidence            7777777765532 355667777777777633

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=1.4e-10  Score=81.47  Aligned_cols=104  Identities=15%  Similarity=0.168  Sum_probs=67.5

Q ss_pred             cCceEEEeec-cCcc-C-ChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEecCccCCcceE-ecCCCCCcccEE
Q 039786           55 QYLQRLYLTG-NMKK-L-PDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLTGTYDYELFH-FEAGWFPKLQKL  130 (210)
Q Consensus        55 ~~L~~L~l~~-~~~~-~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L  130 (210)
                      .++++|+|.+ .++. + +.++..+++|++|++++|.+...+...+..+++|++|++++..- ..++ ....++++|+.|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l-~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC-CEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc-cccCHHHHhCCCccccc
Confidence            3788888877 6654 3 33557778888888888877776667777788888888873322 2222 223556777777


Q ss_pred             EecccCcceeeEEc-cCCCCcccEEEeccCC
Q 039786          131 LLWDFIAVKSVIIE-KGAVPDIRELRIGPCP  160 (210)
Q Consensus       131 ~l~~~~~l~~~~~~-~~~~~~L~~L~i~~~~  160 (210)
                      ++.++. +..++.. ...+++|+++++.+|+
T Consensus       108 ~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         108 NLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             ECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred             ccCCcc-ccccCHHHhcCCcccccccccccc
Confidence            777654 4444332 2456777777777776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=8.2e-11  Score=76.81  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             hhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcc-hhhhhcCCC
Q 039786           25 IANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEP-IRVLQASPN  102 (210)
Q Consensus        25 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~  102 (210)
                      ++++++|++|++++|... ..+ ..+..++ +|+.|++++ .++.+| .+..+++|++|++++|.++..+ +..++.+++
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp-~~~~~l~-~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALP-PALAALR-CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR   91 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCC-GGGGGCT-TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             cccCCCCCEEECCCCccC-cch-hhhhhhh-cccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCC
Confidence            566666666666664332 221 2344454 666666666 556565 3566666666666666665432 345566666


Q ss_pred             ccEEEec
Q 039786          103 LLEILLT  109 (210)
Q Consensus       103 L~~L~l~  109 (210)
                      |+.|+++
T Consensus        92 L~~L~l~   98 (124)
T d1dcea3          92 LVLLNLQ   98 (124)
T ss_dssp             CCEEECT
T ss_pred             CCEEECC
Confidence            6666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=3.8e-12  Score=90.15  Aligned_cols=84  Identities=20%  Similarity=0.205  Sum_probs=46.3

Q ss_pred             hHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhh
Q 039786           20 DLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQ   98 (210)
Q Consensus        20 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~   98 (210)
                      .+..+++.+++|++|++++|... .  ++.+..++ +|+.|++++ .++.+|.....+++|++|++++|.++.  +..+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~--i~~l~~l~-~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-K--ISSLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-C--CCCHHHHT-TCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-C--cccccCCc-cccChhhcccccccccccccccccccccccccccccc--ccccc
Confidence            34455666666666666654322 1  22344444 666666665 555565444444566666666666554  23455


Q ss_pred             cCCCccEEEec
Q 039786           99 ASPNLLEILLT  109 (210)
Q Consensus        99 ~l~~L~~L~l~  109 (210)
                      .+++|+.|+++
T Consensus       113 ~l~~L~~L~L~  123 (198)
T d1m9la_         113 KLVNLRVLYMS  123 (198)
T ss_dssp             HHHHSSEEEES
T ss_pred             ccccccccccc
Confidence            55666666665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=3.9e-10  Score=79.13  Aligned_cols=106  Identities=14%  Similarity=0.038  Sum_probs=76.4

Q ss_pred             CCCceEEEEecCcccccccccccCCccCceEEEeec-cCccC-ChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEE
Q 039786           29 KNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEI  106 (210)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  106 (210)
                      +++++|++++|......+...+..++ +|++|++.+ .+..+ +..+..+++|+.|++++|+++..+..++.++++|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~-~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCc-eEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence            58889999886554444445566676 899999987 66664 4466778899999999998888777788889999999


Q ss_pred             EecCccCCcceEe-cCCCCCcccEEEecccC
Q 039786          107 LLTGTYDYELFHF-EAGWFPKLQKLLLWDFI  136 (210)
Q Consensus       107 ~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~  136 (210)
                      +|++..- ..+.. ....+++|+++++.+.+
T Consensus       108 ~L~~N~l-~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         108 NLYDNQI-SCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             ECCSSCC-CEECTTSSTTCTTCCEEECTTCC
T ss_pred             ccCCccc-cccCHHHhcCCcccccccccccc
Confidence            9974322 22222 23556788888887654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=4.8e-10  Score=73.05  Aligned_cols=71  Identities=23%  Similarity=0.230  Sum_probs=41.6

Q ss_pred             eEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786           33 SLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        33 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      .|+++++....   +..+..+. +|++|++++ .++.+|..++.+++|+.|++++|.++..  +.++.+++|+.|+++
T Consensus         2 ~L~Ls~n~l~~---l~~l~~l~-~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~   73 (124)
T d1dcea3           2 VLHLAHKDLTV---LCHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLC   73 (124)
T ss_dssp             EEECTTSCCSS---CCCGGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECC
T ss_pred             EEEcCCCCCCC---CcccccCC-CCCEEECCCCccCcchhhhhhhhccccccccccccccc--CccccccccCeEECC
Confidence            45555543322   22344444 677777766 6666666666667777777777666553  345666666666665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.89  E-value=5.1e-09  Score=79.40  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=23.8

Q ss_pred             CccCceEEEeec-cCccCChhhhcCCCccEEEEEeecC
Q 039786           53 PPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLGLELSGL   89 (210)
Q Consensus        53 ~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~l~~~~l   89 (210)
                      +++.|++|++.+ .++.+|. ++.+++|++|++.++.+
T Consensus        96 lp~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_          96 LPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC
T ss_pred             hccccccccccccccccccc-hhhhccceeeccccccc
Confidence            343677777776 6666664 46677777777776654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.81  E-value=2.8e-11  Score=85.57  Aligned_cols=102  Identities=24%  Similarity=0.308  Sum_probs=76.4

Q ss_pred             CCCCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCccccccccccc-CCccCceEEEeec-cCccCChhhhcCCCc
Q 039786            2 KLRQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLS-SPPQYLQRLYLTG-NMKKLPDWIFKLKNL   79 (210)
Q Consensus         2 ~L~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~~p~~~~~l~~L   79 (210)
                      .|++|++|++++  .....+ +.++.+++|+.|++++|.....   ..+. .++ +|++|++.+ .++.++ .+..+++|
T Consensus        46 ~L~~L~~L~Ls~--n~I~~i-~~l~~l~~L~~L~Ls~N~i~~i---~~~~~~~~-~L~~L~l~~N~i~~l~-~~~~l~~L  117 (198)
T d1m9la_          46 TLKACKHLALST--NNIEKI-SSLSGMENLRILSLGRNLIKKI---ENLDAVAD-TLEELWISYNQIASLS-GIEKLVNL  117 (198)
T ss_dssp             HTTTCCEEECSE--EEESCC-CCHHHHTTCCEEECCEEEECSC---SSHHHHHH-HCCEEECSEEECCCHH-HHHHHHHS
T ss_pred             cccccceeECcc--cCCCCc-ccccCCccccChhhcccccccc---cccccccc-cccccccccccccccc-cccccccc
Confidence            478999999997  112222 3478899999999998754221   2222 233 799999988 777775 57788999


Q ss_pred             cEEEEEeecCCCcc-hhhhhcCCCccEEEecCc
Q 039786           80 IRLGLELSGLAEEP-IRVLQASPNLLEILLTGT  111 (210)
Q Consensus        80 ~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~  111 (210)
                      ++|++++|.++..+ +..++.+++|++|+++++
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             cccccccchhccccccccccCCCccceeecCCC
Confidence            99999999987753 467889999999999843

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.7e-08  Score=68.11  Aligned_cols=87  Identities=22%  Similarity=0.262  Sum_probs=46.5

Q ss_pred             HHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCC-hhhhcCCCccEEEEEeecCCCcchhhhh
Q 039786           21 LCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNLIRLGLELSGLAEEPIRVLQ   98 (210)
Q Consensus        21 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l~   98 (210)
                      ++..+..+++|+.|++.+++.....+...|..++ +|+.|++.+ .++.++ ..+..+++|++|+|++|+++..+...+.
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  101 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ  101 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             CcccccCccccCeeecCCCccccccCchhhcccc-ccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc
Confidence            3444555566666666554444444444555555 566666665 555543 3455566666666666665554433333


Q ss_pred             cCCCccEEEec
Q 039786           99 ASPNLLEILLT  109 (210)
Q Consensus        99 ~l~~L~~L~l~  109 (210)
                      . .+|+.|+|+
T Consensus       102 ~-~~l~~L~L~  111 (156)
T d2ifga3         102 G-LSLQELVLS  111 (156)
T ss_dssp             S-CCCCEEECC
T ss_pred             c-ccccccccC
Confidence            2 245555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.53  E-value=1.1e-08  Score=77.76  Aligned_cols=127  Identities=17%  Similarity=0.165  Sum_probs=68.4

Q ss_pred             CceEEEeec-cCcc-----CChhhhcCCCccEEEEEeecCCCcch-----hhhhcCCCccEEEecCccC-Cc---ceEec
Q 039786           56 YLQRLYLTG-NMKK-----LPDWIFKLKNLIRLGLELSGLAEEPI-----RVLQASPNLLEILLTGTYD-YE---LFHFE  120 (210)
Q Consensus        56 ~L~~L~l~~-~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~-----~~l~~l~~L~~L~l~~~~~-~~---~~~~~  120 (210)
                      .|+.+.+.+ .++.     +...+...+.|+.|++..|.+.....     ..+...++|+.|+++.+.- ..   .+...
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             ccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence            566666654 3321     22234556777788887777655422     2244667778887763321 11   11112


Q ss_pred             CCCCCcccEEEecccCccee----eE--EccCCCCcccEEEeccCCCCC-----ccccccc-ccccccceeeecc
Q 039786          121 AGWFPKLQKLLLWDFIAVKS----VI--IEKGAVPDIRELRIGPCPLLM-----EIPIGIE-HLKNLKLLKFAGM  183 (210)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~----~~--~~~~~~~~L~~L~i~~~~~l~-----~lp~~l~-~l~~L~~l~l~~~  183 (210)
                      ...+++|+.|++.+|.-...    +.  ......+.|++|++++|. ++     .+...+. +.++|++|++.++
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            33467778888777652111    00  011234668888888776 33     2333332 5677888888764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.3e-07  Score=63.76  Aligned_cols=59  Identities=24%  Similarity=0.287  Sum_probs=35.3

Q ss_pred             ccCCccCceEEEeec--cCccCCh-hhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec
Q 039786           50 LSSPPQYLQRLYLTG--NMKKLPD-WIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT  109 (210)
Q Consensus        50 ~~~~~~~L~~L~l~~--~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  109 (210)
                      +...+ +|++|++.+  .++.++. .+..+++|+.|++++|+++..+..++..+++|++|+|+
T Consensus        27 l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          27 LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             ccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            44444 666666643  3555543 45556666666666666666555566666666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.37  E-value=1.2e-08  Score=77.62  Aligned_cols=108  Identities=16%  Similarity=0.106  Sum_probs=47.1

Q ss_pred             CCCccEEEEEeecCCCcchhh----hhcCCCccEEEecCccCCcc-----eEecCCCCCcccEEEecccCccee----eE
Q 039786           76 LKNLIRLGLELSGLAEEPIRV----LQASPNLLEILLTGTYDYEL-----FHFEAGWFPKLQKLLLWDFIAVKS----VI  142 (210)
Q Consensus        76 l~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~----~~  142 (210)
                      .+.|+.+.+..|.+.......    +...+.|+.|+++.+.....     +......+++|+.|++.++.....    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            344555555555444333222    23455666666653221110     111123345666666665432110    11


Q ss_pred             EccCCCCcccEEEeccCCCCCc-----ccccccc--cccccceeeecch
Q 039786          143 IEKGAVPDIRELRIGPCPLLME-----IPIGIEH--LKNLKLLKFAGMV  184 (210)
Q Consensus       143 ~~~~~~~~L~~L~i~~~~~l~~-----lp~~l~~--l~~L~~l~l~~~~  184 (210)
                      ......++|++|++++|. ++.     +-..+..  .++|++|+++++.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             ccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            112245666666766665 321     1112211  2456667766653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.37  E-value=1.6e-06  Score=65.15  Aligned_cols=91  Identities=30%  Similarity=0.244  Sum_probs=58.9

Q ss_pred             CCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCcccccccccccCCccCceEEEeec-cCccCChhhhcCCCccEEE
Q 039786            5 QLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDLLSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNLIRLG   83 (210)
Q Consensus         5 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~p~~~~~l~~L~~L~   83 (210)
                      ++++|++++  .....+++   ..++|++|+++++... ..+     ....+|+.|++.+ .++.++..   .+.|++|+
T Consensus        39 ~l~~LdLs~--~~L~~lp~---~~~~L~~L~Ls~N~l~-~lp-----~~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNN--LGLSSLPE---LPPHLESLVASCNSLT-ELP-----ELPQSLKSLLVDNNNLKALSDL---PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTT--SCCSCCCS---CCTTCSEEECCSSCCS-SCC-----CCCTTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred             CCCEEEeCC--CCCCCCCC---CCCCCCEEECCCCCCc-ccc-----cchhhhhhhhhhhcccchhhhh---cccccccc
Confidence            578888875  23334443   2467888888875432 221     1223788888887 66666532   24688999


Q ss_pred             EEeecCCCcchhhhhcCCCccEEEecCc
Q 039786           84 LELSGLAEEPIRVLQASPNLLEILLTGT  111 (210)
Q Consensus        84 l~~~~l~~~~~~~l~~l~~L~~L~l~~~  111 (210)
                      +++|.+...+  ..+.+++|+.|+++++
T Consensus       105 L~~n~l~~lp--~~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         105 VSNNQLEKLP--ELQNSSFLKIIDVDNN  130 (353)
T ss_dssp             CCSSCCSSCC--CCTTCTTCCEEECCSS
T ss_pred             cccccccccc--chhhhccceeeccccc
Confidence            9888876543  4567888999888743

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=9.1e-06  Score=62.96  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=67.0

Q ss_pred             CCCcEEEEEecCCCcchHHHHhhcCCCCceEEEEecCccccccc----ccccCCccCceEEEeec-cCcc--CC---hhh
Q 039786            4 RQLRKLSIRPQNGNGKDLCGLIANLKNLESLTVEMTSKEEILDL----LSLSSPPQYLQRLYLTG-NMKK--LP---DWI   73 (210)
Q Consensus         4 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~-~~~~--~p---~~~   73 (210)
                      ++|++|+++........+...+..+++++.|++.+|... ....    ..+...+ +|++|++++ .++.  +.   ..+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~-~~~~~~l~~~L~~~~-~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCC-HHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCC-HHHHHHHHHHHhcCC-CCCEEECcCCcCChHHHHHHHHHH
Confidence            367888888633445556677778888889999887532 2111    2234455 788888877 5542  11   111


Q ss_pred             h-cCCCccEEEEEeecCCCcchh----hhhcCCCccEEEecC
Q 039786           74 F-KLKNLIRLGLELSGLAEEPIR----VLQASPNLLEILLTG  110 (210)
Q Consensus        74 ~-~l~~L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~  110 (210)
                      . ...+|++|++++|.+++....    .+..+++|++|++++
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~  121 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD  121 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhcccccccccccc
Confidence            1 124788888888888765533    345678888888873

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=9e-06  Score=62.99  Aligned_cols=105  Identities=16%  Similarity=0.136  Sum_probs=63.0

Q ss_pred             CCceEEEEecCccccccccc-ccCCccCceEEEeec-cCcc-----CChhhhcCCCccEEEEEeecCCCcchhhhhc---
Q 039786           30 NLESLTVEMTSKEEILDLLS-LSSPPQYLQRLYLTG-NMKK-----LPDWIFKLKNLIRLGLELSGLAEEPIRVLQA---   99 (210)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~l~~---   99 (210)
                      +|+.|+++++.. ....+.. +..+. +++.|+|.+ .++.     +...+..+++|+.|++++|.++..+...+..   
T Consensus         3 ~l~~ld~~~~~i-~~~~~~~l~~~l~-~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEEL-SDARWAELLPLLQ-QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCC-CHHHHHHHHHHHT-TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcC-ChHHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            578888876443 3322222 23344 788888887 5542     3345567888888888888776555444432   


Q ss_pred             --CCCccEEEecCccCCcc----eEecCCCCCcccEEEecccC
Q 039786          100 --SPNLLEILLTGTYDYEL----FHFEAGWFPKLQKLLLWDFI  136 (210)
Q Consensus       100 --l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~  136 (210)
                        .++|+.|+++++...+.    +......+++|+.|++.++.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence              25788888874432211    11123456788888887653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=2.1e-05  Score=52.75  Aligned_cols=79  Identities=25%  Similarity=0.214  Sum_probs=49.3

Q ss_pred             CCccCceEEEeec-cCccCC---hhhhcCCCccEEEEEeecCCCcchhhhhcCCCccEEEec-CccCCcc------eEec
Q 039786           52 SPPQYLQRLYLTG-NMKKLP---DWIFKLKNLIRLGLELSGLAEEPIRVLQASPNLLEILLT-GTYDYEL------FHFE  120 (210)
Q Consensus        52 ~~~~~L~~L~l~~-~~~~~p---~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~-~~~~~~~------~~~~  120 (210)
                      .++ +|+.|++++ .++.++   ..+..+++|+.|++++|.++..+.........|+.|++. +......      ....
T Consensus        63 ~~~-~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          63 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HCT-TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             hCC-CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            345 788888887 676654   345678888888888888777543333345578888887 3221110      0011


Q ss_pred             CCCCCcccEEE
Q 039786          121 AGWFPKLQKLL  131 (210)
Q Consensus       121 ~~~~~~L~~L~  131 (210)
                      ...||+|+.|+
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            34678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.01  E-value=0.00011  Score=49.45  Aligned_cols=35  Identities=17%  Similarity=0.118  Sum_probs=16.4

Q ss_pred             cCCCccEEEEEeecCCCcchhh----hhcCCCccEEEec
Q 039786           75 KLKNLIRLGLELSGLAEEPIRV----LQASPNLLEILLT  109 (210)
Q Consensus        75 ~l~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~  109 (210)
                      ..+.|+.|++++|.+.......    +..-++|++|+++
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~  108 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKAD  108 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECC
Confidence            3445555555555554433222    2233455555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=5.9e-05  Score=50.49  Aligned_cols=87  Identities=20%  Similarity=0.098  Sum_probs=54.1

Q ss_pred             CChhhhcCCCccEEEEEeecCCCcc--hhhhhcCCCccEEEecCccCCcceEecCCCCCcccEEEecccCcceeeE----
Q 039786           69 LPDWIFKLKNLIRLGLELSGLAEEP--IRVLQASPNLLEILLTGTYDYELFHFEAGWFPKLQKLLLWDFIAVKSVI----  142 (210)
Q Consensus        69 ~p~~~~~l~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----  142 (210)
                      ++.....+++|++|++++|.++...  ...+..+++|+.|++++...........-...+|+.+++.+++-.....    
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            3334457899999999999987743  2456789999999998332221111112234578888888776432111    


Q ss_pred             ---EccCCCCcccEEE
Q 039786          143 ---IEKGAVPDIRELR  155 (210)
Q Consensus       143 ---~~~~~~~~L~~L~  155 (210)
                         .....+|+|+.|+
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               1123578888774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.28  E-value=0.0012  Score=44.09  Aligned_cols=17  Identities=24%  Similarity=0.313  Sum_probs=8.7

Q ss_pred             HHhhcCCCCceEEEEec
Q 039786           23 GLIANLKNLESLTVEMT   39 (210)
Q Consensus        23 ~~l~~l~~L~~L~l~~~   39 (210)
                      .++...+.|++|++++|
T Consensus        38 ~~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          38 EAACNSKHIEKFSLANT   54 (167)
T ss_dssp             HHHTTCSCCCEEECTTS
T ss_pred             HHHhhCCccceeecccc
Confidence            34444455555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.13  E-value=0.00089  Score=44.56  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=16.4

Q ss_pred             hcCCCccEEEEEeecCCCcch----hhhhcCCCccEEEec
Q 039786           74 FKLKNLIRLGLELSGLAEEPI----RVLQASPNLLEILLT  109 (210)
Q Consensus        74 ~~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~  109 (210)
                      ...+.++.+++++|.+.....    ..+...++|+.++|.
T Consensus        71 ~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          71 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred             hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeec
Confidence            334555555555555444332    223344555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.64  E-value=0.0022  Score=42.55  Aligned_cols=18  Identities=6%  Similarity=0.074  Sum_probs=9.3

Q ss_pred             HHHhhcCCCCceEEEEec
Q 039786           22 CGLIANLKNLESLTVEMT   39 (210)
Q Consensus        22 ~~~l~~l~~L~~L~l~~~   39 (210)
                      ..++...++|++|++++|
T Consensus        39 ~~al~~n~~L~~L~Ls~n   56 (166)
T d1io0a_          39 AEALKTNTYVKKFSIVGT   56 (166)
T ss_dssp             HHHHTTCCSCCEEECTTS
T ss_pred             HHHHhcCCccCeeeccCC
Confidence            334444555555655554