Citrus Sinensis ID: 039791

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550--
Protein Sequence
MQNPKSLCTIFSRHLSSAAKLKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQWLECFF
Secondary Structure (PSIPRED)
ccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHcccccHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHHcccccccHHHHHHHccccHcHcccHcccccEEccccHHHHHHHHHHHHccccHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEccccHHHHHHHHHHHHccccHHHHcHHEccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEcccHHcHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHccHHHHHHHHHccccHHHHHHHHHHccHHHcccHcccHHHHHHHccccHHHHHHHHHcccccHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHcccHHHHHHccHEEcccHHHccHHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHcccccccHHHHHHcc
Coil and Loop (DISEMBL)
mqnpkslcTIFSRHLSSAaklkiptkyrpRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLSKLIADLgvsysapsfsstfQRFLryhpinefefffesigidhaevscflpankfflsedSCLLNAACAlssfgfpwdklgkLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLgfphvlagngdewGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFrfekgklgelmgrnksifldypeEVLVQKVEYFCRfgvgnedvgllllkspeilsfdlETQVISVKGLLNHLGLSAKELKSVSEMYPYvlgrnkmanlpYVIRAVDLQDWFFNKITNGYYKLLGnyalsnpdedldrEFGDSLEKLlsssrtprhtmnKLTFLhgigygenTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIrltpkilnqnpetIEQKLDFLCQDLGSSLdylyafptflcfdleyrikpryKFHMWLVENGLCTKNYSIASMVATSEKSFISRIygihpaapkqwlecff
Flexible Loop (DISEMBL)
mqnpkslcTIFSRHLssaaklkiptkyrpRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRfekgklgelmgrnKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLlsssrtprhtmNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQWLECFF
Low Complexity Region (SEG)
MQNPKSLCTIFSRHLSSAAKLKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQWLECFF
Disordered region (IsUnstruct)
******LCTIFSRHLSSAAKLKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALS***************************MNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQWLECF*
Disordered Region (DISOPRED)
*****************************RAIKEAQQAVTEYLHYTKSIPFTYAE*ISKHSLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQWLECFF
Disordered Region (DISEMBL)
MQNPKSLCTIFSRHLSSAAKLKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQWLECFF
Disordered Region (DISPRO)
*********I*S**LSSAAKLKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQWLECFF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQNPKSLCTIFSRHLSSAAKLKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQWLECFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	552
255541094	561	conserved hypothetical protein [Ricinus	0.969	0.953	0.626	0.0
225453434	561	PREDICTED: uncharacterized protein LOC10	0.980	0.964	0.630	0.0
147841403	545	hypothetical protein VITISV_026394 [Viti	0.951	0.963	0.614	0.0
224136494	575	predicted protein [Populus trichocarpa]	0.981	0.942	0.587	0.0
297817338	560	hypothetical protein ARALYDRAFT_907562 [	0.976	0.962	0.554	1e-175
15232313	558	Mitochondrial transcription termination	0.960	0.949	0.542	1e-170
357507879	737	hypothetical protein MTR_7g080620 [Medic	0.990	0.742	0.512	1e-163
356523046	560	PREDICTED: uncharacterized protein LOC10	0.980	0.966	0.499	1e-140
356503273	566	PREDICTED: uncharacterized protein LOC10	0.967	0.943	0.484	1e-139
115471685	575	Os07g0409400 [Oryza sativa Japonica Grou	0.905	0.869	0.375	1e-95

>gi|255541094|ref|XP_002511611.1| conserved hypothetical protein [Ricinus communis] gi|223548791|gb|EEF50280.1| conserved hypothetical protein [Ricinus communis]

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/543 (62%), Positives = 427/543 (78%), Gaps = 8/543 (1%)

Query: 7   LCTIFSRHLSSAAKLKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLS 66
           LC  FS  L      KIP+KY+ +AI+EAQQA+T+YLH T+S+PF YAEHISK+SL +LS
Sbjct: 9   LCRNFSS-LPRQKLSKIPSKYKAKAIREAQQALTDYLHSTRSLPFAYAEHISKNSLVSLS 67

Query: 67  KLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDS 126
            LIA+  V +S   FS + ++FLRYHPINEFEFF+ESIG+D+ EV  FLP+NKFF SED 
Sbjct: 68  NLIAN--VDFSVSDFSRSVRKFLRYHPINEFEFFYESIGLDYNEVRNFLPSNKFFFSEDG 125

Query: 127 CLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICL 186
             L+AACAL+SFGFPW KLG LYKE+ SIFS+   +L ++LS  K   GFSN  ++GICL
Sbjct: 126 SALDAACALASFGFPWYKLGTLYKEDSSIFSRDPLELKSRLSGFKEC-GFSNTSVIGICL 184

Query: 187 GFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFE 246
            FPHVL+G   + G EI  LFDDLK  F+DF + S V+G+V+ WYDIC KIRVFYD    
Sbjct: 185 AFPHVLSG---DLGGEIDALFDDLKRAFIDFNMGSCVQGHVDAWYDICLKIRVFYDLGLN 241

Query: 247 KGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVI 306
           KGK+G+++G++K+IF+D P EVL++K EYFCRFGV   DVG+LLL+ PE+L FDLET +I
Sbjct: 242 KGKVGDIIGKSKTIFIDCPIEVLIKKTEYFCRFGVSKVDVGMLLLQKPELLCFDLETPLI 301

Query: 307 SVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLL 366
           SVKG+L H G + +EL+ V   YP+V+GRNKMANLP+V+RA+DL  WFFNKI +GY++LL
Sbjct: 302 SVKGILEHFGFNVEELEVVIHKYPHVMGRNKMANLPHVMRAMDLHLWFFNKIKDGYHELL 361

Query: 367 GNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHG 426
            +YAL +PDEDLD+EF DSLE+ +  SRTP HTM+KL F+HGIG+GEN LT+KVL   HG
Sbjct: 362 ASYALRDPDEDLDKEFSDSLER-IRVSRTPTHTMSKLDFVHGIGFGENALTVKVLTHLHG 420

Query: 427 TGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYA 486
           + SELQERFDCLLR G+ FSKLC MIR  PKILNQ  E +EQK++FLCQ++GSSL  LY 
Sbjct: 421 SSSELQERFDCLLRLGIGFSKLCTMIRTMPKILNQQSEILEQKVNFLCQEMGSSLQELYI 480

Query: 487 FPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQ 546
           FP FLCF+LE RIKPRY+FHMWL E G+ T+ YSI+S+VATSEK+F++R+YGIHPA PK 
Sbjct: 481 FPAFLCFNLENRIKPRYRFHMWLTEKGVSTQTYSISSIVATSEKNFVARLYGIHPAVPKH 540

Query: 547 WLE 549
           W E
Sbjct: 541 WFE 543

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453434|ref|XP_002272894.1| PREDICTED: uncharacterized protein LOC100244389 [Vitis vinifera]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/550 (63%), Positives = 422/550 (76%), Gaps = 9/550 (1%)

Query: 6   SLCTIFSRHLSSAAK----LKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHS 61
           SLCT  SR LSS  K      IP+K+R +A+  AQ+A+T+Y H T+S+PF YAEHI ++S
Sbjct: 11  SLCTYLSRQLSSLPKNSNLSHIPSKHRSQAVLLAQKALTDYFHSTRSLPFLYAEHIGRNS 70

Query: 62  LNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFF 121
             +L   I+   V +S  SF+ +F+RFLRYHPINEFEFFFESIGI   E+S FLP NKFF
Sbjct: 71  FYSLYDPISK--VEFSLSSFAKSFERFLRYHPINEFEFFFESIGITQKEISGFLPPNKFF 128

Query: 122 LSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVIL 181
            +ED  +LNAA ALS FGFPW+KLG LYK E SIF + S DL+ +L R K+Y G SNV +
Sbjct: 129 FAEDGRILNAAGALSGFGFPWNKLGILYKAEASIFDKDSDDLSRRLCRFKDY-GLSNVSV 187

Query: 182 VGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFY 241
           +GICL FP VL G GD  G E   LFDDLK VFVDF L S VE NV+ WY+ICRKIR+FY
Sbjct: 188 IGICLAFPFVLGGKGD-LGVEAGALFDDLKRVFVDFDLGSFVEENVDAWYEICRKIRLFY 246

Query: 242 DFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDL 301
           D   EKGK+GELMGR+++IFL+Y EEVLV+K+++FCR  V    +GLLLL+ PEILSFDL
Sbjct: 247 DLGCEKGKIGELMGRSRNIFLEYSEEVLVRKMDFFCRLNVRKAGIGLLLLECPEILSFDL 306

Query: 302 ETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNG 361
           E  VISV G L H GL  ++ KSV+ MYPYVLGRNKMANLP+V+RA+DL +WFF  + NG
Sbjct: 307 EAPVISVMGFLKHFGLGLQKSKSVARMYPYVLGRNKMANLPHVMRALDLHEWFFGMMKNG 366

Query: 362 YYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVL 421
            ++LLGNY LS+PDEDLD ++   LEK + SSRTP HT+NKL FLHGIGYGEN LT+KVL
Sbjct: 367 NHRLLGNYVLSHPDEDLDEDYRVGLEK-IQSSRTPAHTINKLNFLHGIGYGENLLTMKVL 425

Query: 422 AKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSL 481
              HGT SELQERF+CLL  G+ FSKLC MI  + KILNQ PE +E+K++FL Q++G SL
Sbjct: 426 EHVHGTSSELQERFNCLLHAGLEFSKLCTMISFSAKILNQKPEILERKVNFLIQEMGLSL 485

Query: 482 DYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHP 541
            YL  FP +LCF+L+ RIKPRY+ H+WL ENGLCTKNYS+ASM+ATSEKSFI+R+YGIHP
Sbjct: 486 QYLDVFPAYLCFNLDNRIKPRYRCHVWLAENGLCTKNYSLASMIATSEKSFIARLYGIHP 545

Query: 542 AAPKQWLECF 551
           A PK WLECF
Sbjct: 546 AVPKLWLECF 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841403|emb|CAN60176.1| hypothetical protein VITISV_026394 [Vitis vinifera]

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/550 (61%), Positives = 413/550 (75%), Gaps = 25/550 (4%)

Query: 6   SLCTIFSRHLSSAAK----LKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHS 61
           SLCT  SR LSS  K      IP+K+R +A+  AQ+A+T+Y H T+S+PF YAEHI ++S
Sbjct: 11  SLCTYLSRQLSSLPKNSNLSHIPSKHRSQAVLLAQKALTDYFHSTRSLPFLYAEHIGRNS 70

Query: 62  LNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFF 121
             +L   I+   V +S  SF+ +F+RFLRYHPINEFEFFFESIGI   E+S FLP NKFF
Sbjct: 71  FYSLYDPISK--VEFSLSSFAKSFERFLRYHPINEFEFFFESIGITQKEISGFLPPNKFF 128

Query: 122 LSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVIL 181
            +ED  +LNAA ALS FGFPW+KLG LYK E SIF + S DL+ +L R K+Y G SNV +
Sbjct: 129 FAEDGRILNAAGALSGFGFPWNKLGILYKAEASIFDKDSDDLSRRLCRFKDY-GLSNVSV 187

Query: 182 VGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFY 241
           +GICL FP VL G GD  G E   LFDDLK VFVBF L S VE NV+ WY+ICRKIR+FY
Sbjct: 188 IGICLAFPFVLGGKGD-LGVEAGALFDDLKRVFVBFDLGSFVEENVDAWYEICRKIRLFY 246

Query: 242 DFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDL 301
           D   EKGK+GELMGR+++IFL+Y EEVLV+K+++FCR  V    +GLLLL+ PEILSFDL
Sbjct: 247 DLGCEKGKIGELMGRSRNIFLEYSEEVLVRKMDFFCRLNVRKAGIGLLLLECPEILSFDL 306

Query: 302 ETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNG 361
           E                A + KSV+ MYPYVLGRNKMANLP+V+RA+DL +WFF  + NG
Sbjct: 307 E----------------APKSKSVARMYPYVLGRNKMANLPHVMRALDLHEWFFGMMKNG 350

Query: 362 YYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVL 421
            ++LLGNY LS+PDEDLD ++   LEK+  SSRTP HT+NKL FLHGIGYGEN LT+KVL
Sbjct: 351 NHRLLGNYVLSHPDEDLDEDYRVGLEKI-QSSRTPAHTINKLNFLHGIGYGENLLTMKVL 409

Query: 422 AKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSL 481
              HGT SELQERF+CLL  G+ FSKLC MI  + KILNQ PE +E+K++FL Q++G SL
Sbjct: 410 EHVHGTSSELQERFNCLLHAGLEFSKLCTMISFSAKILNQKPEILERKVNFLIQEMGLSL 469

Query: 482 DYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHP 541
            YL  FP +LCF+L+ RIKPRY+ H+WL ENGLCTKNYS+ASM+ATSEKSFI+R+YGIHP
Sbjct: 470 QYLDVFPAYLCFNLDNRIKPRYRXHVWLAENGLCTKNYSLASMIATSEKSFIARLYGIHP 529

Query: 542 AAPKQWLECF 551
           A PK WLECF
Sbjct: 530 AVPKLWLECF 539

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136494|ref|XP_002326874.1| predicted protein [Populus trichocarpa] gi|222835189|gb|EEE73624.1| predicted protein [Populus trichocarpa]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/557 (58%), Positives = 424/557 (76%), Gaps = 15/557 (2%)

Query: 1   MQNPKSLCTIFSRHLSSAAKLK-----IPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAE 55
           M  P S+ T F RH SS+   +     +P KY+ +AIK AQQA+T+YLH T+S+P++YA+
Sbjct: 4   MPIPISIYTTFCRHFSSSLPKRPIFTSVPWKYKNQAIKLAQQALTDYLHSTRSLPYSYAD 63

Query: 56  HISKHSLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFL 115
            ISK+SL +LS L+++  + +++P+F+++ Q++LRYHPINE EFF+ESIGID+ EVS FL
Sbjct: 64  QISKNSLVSLSNLVSN--IHFTSPTFATSLQKYLRYHPINELEFFYESIGIDYDEVSGFL 121

Query: 116 PANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYG 175
             +KFF+SE+   +N +C L  FGFPW+KLG LYKEE  +FS S +++ ++L  LK +  
Sbjct: 122 SNDKFFISEEGSAINVSCVLCDFGFPWNKLGMLYKEEKRVFSMSEEEVKSRLCGLKGFR- 180

Query: 176 FSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICR 235
           FS   ++GI L FP VL G   E   EI  LFDDLK VFVDF L S VEGNV+ WY++CR
Sbjct: 181 FSTTSVIGISLAFPFVLRG---ELSGEIGALFDDLKRVFVDFDLESCVEGNVDAWYEVCR 237

Query: 236 KIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPE 295
           KIRVFYD   EKGK+GELMG++K IF+DYP EVLVQK E+FC+FGV  EDVGLLLL  P 
Sbjct: 238 KIRVFYDLGCEKGKVGELMGKSKRIFVDYPVEVLVQKAEFFCKFGVRKEDVGLLLLTKPG 297

Query: 296 ILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFF 355
           IL F LE QVISVKGLL H GLSA+ELKSV++ Y +V GRNKMANLP+V+RA++L +WFF
Sbjct: 298 ILDFQLEGQVISVKGLLKHFGLSAEELKSVAQNYGHVFGRNKMANLPHVMRAMELHEWFF 357

Query: 356 NKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENT 415
           NKI +G ++LL +Y +S+PDEDLD ++ DSLE+ +  +RTP HTMNKL FLH IG+GEN 
Sbjct: 358 NKIKDGNHQLLASYVMSDPDEDLDEKYRDSLER-IQCTRTPMHTMNKLEFLHAIGFGENA 416

Query: 416 LTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQ 475
           LT+KVL   HGT SELQER DCLLR G+ FSKLC MIR+ PKIL+Q PE ++QKL++LC+
Sbjct: 417 LTIKVLTDLHGTSSELQERVDCLLRYGIVFSKLCSMIRMMPKILSQKPEILQQKLNYLCE 476

Query: 476 DLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISR 535
           D+ SSL YL  FP+FLCF+LE RIKPR++FHMWL E G C + YSIAS+VATS+KSF++R
Sbjct: 477 DMKSSLQYLDIFPSFLCFNLENRIKPRHRFHMWLTERGFCKQEYSIASIVATSDKSFVAR 536

Query: 536 IYGIHPAA---PKQWLE 549
           ++     A   P Q +E
Sbjct: 537 LHMTMAVAYFHPCQHME 553

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817338|ref|XP_002876552.1| hypothetical protein ARALYDRAFT_907562 [Arabidopsis lyrata subsp. lyrata] gi|297322390|gb|EFH52811.1| hypothetical protein ARALYDRAFT_907562 [Arabidopsis lyrata subsp. lyrata]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 302/545 (55%), Positives = 397/545 (72%), Gaps = 6/545 (1%)

Query: 8   CTIFSRHLSSAAK-LKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLS 66
            +IF    + AAK  ++P+KY+  AI +AQQA+T+YLH T+S+ +T+AE I+ ++  ++ 
Sbjct: 9   ASIFHNFSTVAAKHRRVPSKYKSLAIGKAQQAITDYLHTTRSLSYTHAEQIASNASVSIR 68

Query: 67  KLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDS 126
            LI  L + +S P+FS + ++ L YHPINEFEFFFESIGID++EV  FLP  KFF SED 
Sbjct: 69  NLI--LKLDFSVPTFSKSLRKHLSYHPINEFEFFFESIGIDYSEVCEFLPEKKFFFSEDR 126

Query: 127 CLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICL 186
            +L+AACALS FGFPW+KLGKLYKEE  +F QS  ++ ++L + K+  GFS V ++G CL
Sbjct: 127 TVLDAACALSGFGFPWNKLGKLYKEERLVFVQSPGEIDSRLLKFKDL-GFSTVAVIGTCL 185

Query: 187 GFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFE 246
            FPH L G G E G+EI  LF  LK +F +F      E NV+ W  + RKIRVFYD   E
Sbjct: 186 AFPHALCGGG-ELGSEILCLFVKLKRLFDEFDSQHLCEENVDSWLAVSRKIRVFYDLGCE 244

Query: 247 KGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVI 306
             ++ ELMGRNKS+FL+Y EE LV+K EYFCRFGV  EDV LL+L++P I++FDLE  VI
Sbjct: 245 NEEMWELMGRNKSLFLEYSEEALVKKAEYFCRFGVRKEDVALLILRNPAIMNFDLEKPVI 304

Query: 307 SVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLL 366
           SV G+L H GL   E+ +V++ YPYVLGRNK+ NLPYV+RA+DL +   + + NG + LL
Sbjct: 305 SVTGMLKHFGLRQDEVDAVAQKYPYVLGRNKLKNLPYVLRAIDLHERIVDILKNGSHHLL 364

Query: 367 GNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHG 426
            +Y++ +P EDLDRE+ + LE+L  +SRT  H + KL FLH IG+GEN +T+KVL   HG
Sbjct: 365 ASYSVMDPYEDLDREYQEGLEEL-QNSRTKTHNIQKLDFLHEIGFGENGMTMKVLQHVHG 423

Query: 427 TGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYA 486
           T  ELQ+RF  LL +G+ FSK+C++IR  PKILNQ P +I+ KL FLC ++G SLDYL  
Sbjct: 424 TAVELQDRFQILLDSGIIFSKICLLIRSAPKILNQKPHSIQDKLRFLCGEMGDSLDYLDV 483

Query: 487 FPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQ 546
           FP +LCFDLE RI PR++FH WLVE GL  K+YSIAS+VATSEK+FI+R+YGIHPA PK 
Sbjct: 484 FPAYLCFDLENRISPRFRFHKWLVEKGLSEKSYSIASIVATSEKAFIARLYGIHPAIPKH 543

Query: 547 WLECF 551
           W E F
Sbjct: 544 WFERF 548

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232313|ref|NP_191599.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|7287988|emb|CAB81826.1| putative protein [Arabidopsis thaliana] gi|332646534|gb|AEE80055.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 290/535 (54%), Positives = 384/535 (71%), Gaps = 5/535 (0%)

Query: 17  SAAKLKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLSKLIADLGVSY 76
           +A   ++P+KY+  AI +AQQA+T+YLH T+S+ +T+AE I+ ++  ++  LI  L + +
Sbjct: 19  AAKHRRVPSKYKSLAIGKAQQAITDYLHTTRSLSYTHAEQIASNASVSIRNLI--LKLDF 76

Query: 77  SAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALS 136
           S P+FS + ++ L YHPINEFEFFFESIGID++EVS FLP  KFF SED  +L+AA ALS
Sbjct: 77  SVPTFSKSLRKHLSYHPINEFEFFFESIGIDYSEVSEFLPEKKFFFSEDRTVLDAAFALS 136

Query: 137 SFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNG 196
            FGFPW+KLGKLYKEE  +F Q   ++ ++L + K+  GFS V ++G CL  P  L G G
Sbjct: 137 GFGFPWNKLGKLYKEERLVFVQRPGEIESRLLKFKDI-GFSTVAVIGTCLAIPRTLCGGG 195

Query: 197 DEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGR 256
            E G+EI  LF  LK +F +F      E NV+ W  + RKIR+FYD   E  ++ ELM R
Sbjct: 196 -ELGSEIRCLFVKLKRLFDEFDSHHLFEENVDSWLAVSRKIRIFYDLGCENEEMWELMCR 254

Query: 257 NKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLG 316
           NKS+FL+Y EE L+ K  YFCRFGV  ED  LL+L++P I++FDLE  VISV G+L H G
Sbjct: 255 NKSLFLEYSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314

Query: 317 LSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDE 376
           L   E+ +V++ YPYV GRN++ NLPYV+RA+DL +  F+ + NG + LL +Y L +PDE
Sbjct: 315 LRQDEVDAVAQKYPYVFGRNQLKNLPYVLRAIDLHERIFDILKNGNHHLLASYTLMDPDE 374

Query: 377 DLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFD 436
           DL+RE+ + LE+L  +SRT RH + KL FLH IG+GEN +T+KVL   HGT  EL +RF 
Sbjct: 375 DLEREYQEGLEEL-QNSRTKRHNIQKLDFLHEIGFGENGITMKVLQHVHGTAVELHDRFQ 433

Query: 437 CLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLE 496
            LL +G+ FSK+CM+IR  PKILNQ P +I+ KL FLC ++G SLDYL  FP +LCFDLE
Sbjct: 434 ILLNSGIIFSKICMLIRSAPKILNQKPHSIQDKLRFLCGEMGDSLDYLEVFPAYLCFDLE 493

Query: 497 YRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQWLECF 551
            RI PR++FH WLVE G   K+YSIAS+VATSEK+FI+R+YGIHPA PK W E F
Sbjct: 494 NRISPRFRFHKWLVEKGFSEKSYSIASIVATSEKAFIARLYGIHPAIPKHWFERF 548

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507879|ref|XP_003624228.1| hypothetical protein MTR_7g080620 [Medicago truncatula] gi|355499243|gb|AES80446.1| hypothetical protein MTR_7g080620 [Medicago truncatula]

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 287/560 (51%), Positives = 388/560 (69%), Gaps = 13/560 (2%)

Query: 1   MQNPKSLCTIFSRHLSSAAKL------KIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYA 54
           ++  +++     RH S+  K       KIP K+R   I EAQ+A+T+YLH TKSIPFTYA
Sbjct: 21  LKTNRAMFFFLHRHFSTTTKTNFPNLSKIPIKHRNHVIYEAQKALTDYLHNTKSIPFTYA 80

Query: 55  EHISKHSLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCF 114
           EHI  ++  +L+ LI+   V++S P+FS+  +R +R+HPINEFE FFESIGID+  VS  
Sbjct: 81  EHIGNNTFCSLTNLISK--VNFSPPTFSNNIKRVIRFHPINEFEVFFESIGIDYTLVSDL 138

Query: 115 LPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYY 174
           LP +K F SED  LL AAC L  FGFPW+KLG LY E+ SIF +S ++L  +L   K + 
Sbjct: 139 LPNDKLFFSEDRTLLEAACVLCDFGFPWEKLGVLYMEKSSIFGKSVEELKLRLCWFKRF- 197

Query: 175 GFSNVILVGICLGFPHVLAGNGDEWGTE---IATLFDDLKTVFVDFGLMSSVEGNVEVWY 231
           GF NV ++GICL FP VL+   D+       I  LF DLK +F+D  L S VEGNV+ WY
Sbjct: 198 GFGNVEVIGICLAFPFVLSEEVDQIQKGVFGIDGLFSDLKLIFLDNSLGSYVEGNVDSWY 257

Query: 232 DICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLL 291
           ++CRK+R+F+D    KG +GELMG+NKSIF+D+ E+ +V +VEY CRFG   E+V LL+L
Sbjct: 258 EVCRKLRMFFDLSGWKGNVGELMGKNKSIFVDHKEDEIVHRVEYLCRFGGKKEEVALLIL 317

Query: 292 KSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQ 351
           + PE+L  DLE  VI+V  LL H G+S+K+L+ V E + +VLG  +M NLP V+RA+ LQ
Sbjct: 318 QCPEVLKLDLEKTVINVLELLKHFGMSSKDLEDVIENFGHVLGTIRMVNLPNVMRAMGLQ 377

Query: 352 DWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGY 411
           +WF +K+  G+++LL +Y  S+ +ED D+ + D L ++   SR   H++NKL FLH +G+
Sbjct: 378 EWFCDKLKGGHHQLLADYIASDRNEDRDKVYQDGLRRI-HISRARVHSINKLNFLHRLGF 436

Query: 412 GENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLD 471
           GEN LT+ +L   HGT SELQERFDCLLR+ + FSKLCMM+R TP+ILNQN E IEQK+ 
Sbjct: 437 GENALTMNLLDCLHGTSSELQERFDCLLRSRIEFSKLCMMVRKTPRILNQNYEIIEQKVI 496

Query: 472 FLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKS 531
           F  Q +G++LDYL  FP  L + L+ RI PRY+FH WL E GL  + YS+ SM+  SEK 
Sbjct: 497 FFNQKMGTTLDYLETFPAMLHYHLDDRIIPRYRFHTWLTERGLSYRKYSVQSMITDSEKK 556

Query: 532 FISRIYGIHPAAPKQWLECF 551
           F++R++ IHPAAPK W E F
Sbjct: 557 FVARVFKIHPAAPKHWFEQF 576

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523046|ref|XP_003530153.1| PREDICTED: uncharacterized protein LOC100812245 [Glycine max]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/557 (49%), Positives = 369/557 (66%), Gaps = 16/557 (2%)

Query: 5   KSLCTIFSRHLSSAAKLKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNT 64
           + +CT  S+ LS+AA   IP KY+  AI + Q+++T+YLH T+ IP+ YA+ I+K+SL +
Sbjct: 5   RHVCTTTSK-LSAAAAAAIPWKYKKFAIAQGQKSLTDYLHATRCIPYAYADKIAKNSLTS 63

Query: 65  LSKLIADL-GVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLS 123
           L+ LI    G S+S P F     +FLRYHPINEFEFFFESIGI  +++   LP + FF S
Sbjct: 64  LTTLITTTLGGSFSPPHFPHNLNKFLRYHPINEFEFFFESIGIHPSKLGSLLPQDNFFFS 123

Query: 124 EDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVG 183
           ED  LLNAA  L  FGFPWD+LG LY E    F   + +L  +L   K Y GF N  +VG
Sbjct: 124 EDDTLLNAARVLHEFGFPWDRLGILYVESGCFFKCGASELKGRLCGFKRY-GFCNAQVVG 182

Query: 184 ICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEG----NVEVWYDICRKIRV 239
           ICL FP V  G   + G E+  LF DL  +F + GL   VEG    +V+ W  +CRKIR+
Sbjct: 183 ICLAFPFVFDG---QKGDEVEALFCDLGLLFGELGLAECVEGKGNNSVDDWIGVCRKIRL 239

Query: 240 FYDFRFEKGKLGELMGRNKSI----FLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPE 295
           FYD    +  L EL+G N  +     L++ EE LVQ  EYFC FG   EDV  L++   E
Sbjct: 240 FYDLNGGR-SLVELVGGNNGVGVGVILEHGEEELVQATEYFCSFGAKKEDVARLIVDGRE 298

Query: 296 ILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFF 355
           +L  DL+T+V+ V  LL + G+S+ +++ V   Y +VLG  KM NLP V+RA+ L +WFF
Sbjct: 299 LLELDLKTRVVDVVKLLKYFGMSSDDVEDVRRDYAHVLGTVKMGNLPNVMRALGLHEWFF 358

Query: 356 NKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENT 415
            KI +G + LL ++  S P+E  D  +   L K +  SRTP H ++KL FLH IG+GEN 
Sbjct: 359 GKIKDGNHCLLVSFVASYPNEVQDEGYLGCL-KAIQESRTPTHNISKLNFLHAIGFGENA 417

Query: 416 LTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQ 475
           LT+ V A+ HGT  ELQ+RFDCLLR G+ FSK+C MI + PKIL+QNP+ +EQK++F CQ
Sbjct: 418 LTMNVYAQMHGTSVELQKRFDCLLRLGIEFSKVCKMITIYPKILSQNPQNLEQKVNFFCQ 477

Query: 476 DLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISR 535
           ++G SL++L  FP FLCFDLE RIKPRY+FHMW++E GL +K YSIASMVATS K+F++R
Sbjct: 478 EMGHSLEHLVTFPAFLCFDLENRIKPRYRFHMWIMEKGLSSKKYSIASMVATSNKNFVAR 537

Query: 536 IYGIHPAAPKQWLECFF 552
            + IHPAA K W E F+
Sbjct: 538 AFKIHPAALKHWFEQFY 554

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503273|ref|XP_003520435.1| PREDICTED: uncharacterized protein LOC100800581 [Glycine max]

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/561 (48%), Positives = 367/561 (65%), Gaps = 27/561 (4%)

Query: 13  RHLSSAAKLK-----------IPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHS 61
           RH+ + +KL            IP KY+  AI + Q+++T+YLH T+SIP+ YA  I+K+S
Sbjct: 5   RHVCTTSKLSAAAAASTATMAIPWKYKKFAISQGQKSLTDYLHATRSIPYAYANQIAKNS 64

Query: 62  LNTLSKLIADLGV-SYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKF 120
           L +L+ LI  LG  S+S   F     +FL YHPINEFEFFFESIGI  +     LP +KF
Sbjct: 65  LTSLTTLITTLGTSSFSPLHFPHNLNKFLMYHPINEFEFFFESIGIHPSNFHSLLPQDKF 124

Query: 121 FLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVI 180
           F S+D  LL+AAC L  FGFPWD+LG LY E     +  + +L  ++   K Y G  N  
Sbjct: 125 FFSQDDTLLSAACVLYEFGFPWDRLGVLYVESGCFLNWGASELKDRVCGFKRY-GLCNEQ 183

Query: 181 LVGICLGFPHVLAGN-GDEWGTEIATLFDDLKTVFVDFGLMSSVEG----NVEVWYDICR 235
           +VG+C+ FP V  G  GD+   E+  LF DL  +F +FGL   VEG    +V+ W  +CR
Sbjct: 184 VVGVCMAFPFVFDGQKGDD---EVEALFRDLGLLFGEFGLAECVEGKGNYSVDDWIRVCR 240

Query: 236 KIRVFYDFRFEKGKLGELMGRNKSI----FLDYPEEVLVQKVEYFCRFGVGNEDVGLLLL 291
           KIR+FYD    K  L EL+GRN        +++ EE LVQ  EYFCRFG   EDV  L++
Sbjct: 241 KIRLFYDLNGGKS-LVELIGRNNGGGVGVIVEHGEEELVQAAEYFCRFGAKKEDVARLIV 299

Query: 292 KSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQ 351
             PE+L  DLE  V+ V  LL + G+ + +++ V   Y +VLG  KM NLP V+RA+ L+
Sbjct: 300 DGPELLELDLEAWVVDVVKLLKYFGMRSDDVEDVRRDYAHVLGTVKMGNLPNVMRALGLR 359

Query: 352 DWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGY 411
           +WFF+KI +G ++LL ++  S P E  D  +   L K + +SRTP H ++KL FLH IG+
Sbjct: 360 EWFFDKIKDGNHQLLVSFVTSCPGEFQDEGYLGRL-KAIKASRTPTHNISKLNFLHAIGF 418

Query: 412 GENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLD 471
           GEN LT+ V A+ HGT  +LQ+RF+CLLR G+ FSK+C MI + PKIL+QNP+ +EQK++
Sbjct: 419 GENALTMNVYAQMHGTSGKLQKRFNCLLRLGIEFSKICKMITIHPKILSQNPQNLEQKVN 478

Query: 472 FLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKS 531
           F CQ++G SL++L  FP FLCFDLE RIKPRY+FHMW++E GL +KNYSI SMVATS+K+
Sbjct: 479 FFCQEMGYSLEHLITFPAFLCFDLENRIKPRYRFHMWIMEKGLSSKNYSITSMVATSDKN 538

Query: 532 FISRIYGIHPAAPKQWLECFF 552
           F++R   IHPAA K W E F+
Sbjct: 539 FVARALKIHPAALKHWFEQFY 559

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115471685|ref|NP_001059441.1| Os07g0409400 [Oryza sativa Japonica Group] gi|23617035|dbj|BAC20725.1| unknown protein [Oryza sativa Japonica Group] gi|113610977|dbj|BAF21355.1| Os07g0409400 [Oryza sativa Japonica Group]

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 197/524 (37%), Positives = 300/524 (57%), Gaps = 24/524 (4%)

Query: 39  VTEYLHYTKSIPFTYAEHISKHSLNTLSKLIADLGV---SYSAPSFSSTFQRFLRYHPIN 95
           V+EYLH T+ +P ++A+ I+  S  +L   +A L     S    +F S  +R L +HP+N
Sbjct: 44  VSEYLHATRCLPSSHADTIAARSPRSLHAFLAGLPAVPSSLRTSAFPSLLRRHLAFHPLN 103

Query: 96  EFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSI 155
           E  FF ESIG+     S  +     FL++   LL A  AL+ FGFPW +LG L+    ++
Sbjct: 104 ELPFFLESIGLPPTTRSDLM-----FLADHPSLLPAVAALAHFGFPWSRLGLLFP---TV 155

Query: 156 FSQSSQDL-TAKLSRLKNYYG-FSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTV 213
             +   DL T++L+ L+   G      ++  CL FP +L  +     +    L DDL  V
Sbjct: 156 LLRLPPDLITSRLASLEACLGPLPRAAIIAACLAFPSLLENDL----SSSDRLVDDLGKV 211

Query: 214 FVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMG-RNKSIFLDYPEEVLVQK 272
           F   G       +++ +  +CR+  +FYD   E G +G+L+G  N+ +FL+  EE + + 
Sbjct: 212 FGRLGPGLGTSNDIDAFLGVCRRTWMFYDAGSEVGGIGDLVGCNNQRVFLELEEERIGKM 271

Query: 273 VEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYV 332
           +++F   G+  E+VG  LL +P +   +    VISV   L  +GL+  E+ +  E +PYV
Sbjct: 272 LKFFKGLGMAGEEVGRFLLTNPMVFYLEFGDVVISVPEYLRRVGLAVNEVNAAVEKHPYV 331

Query: 333 LGRNKMANLPYVIRAVDLQDWFFNKITNG---YYKLLGNYALSNP--DEDLDREFGDSLE 387
           +G+N + NLP V+RA++L  WF  KI++G      L  ++ L +   D +++R F   + 
Sbjct: 332 VGKNLLQNLPGVLRAMELDHWFLEKISDGGESLRYLFPDFVLEDVSYDVEIERAFLGGMI 391

Query: 388 KLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSK 447
           K+ +  R  +H   KL FL  IGYGEN +  K++A  H     LQERFDCLL  G+ +  
Sbjct: 392 KMKADKRA-QHIDGKLEFLKSIGYGENKIATKIIAVLHSNRDTLQERFDCLLERGLEYKM 450

Query: 448 LCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHM 507
           LC ++ + PKILNQ  + +  KL+++ ++LG S++YL  FP FLCFDLE R+KPRY    
Sbjct: 451 LCQIVSVFPKILNQGKKMLNDKLNYMTKELGYSVEYLELFPAFLCFDLENRVKPRYTMLR 510

Query: 508 WLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQWLECF 551
           WL ENGL  +  + A+++A SEK FIS +Y +HPAAPK WLECF
Sbjct: 511 WLRENGLLRRTLAPATVLANSEKRFISNLYNVHPAAPKLWLECF 554

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	552
TAIR|locus:2103291	558	SHOT1 "AT3G60400" [Arabidopsis	0.969	0.958	0.542	1.4e-156
TAIR|locus:2170209	1141	AT5G06810 "AT5G06810" [Arabido	0.891	0.431	0.284	1.4e-40
TAIR|locus:2133920	575	AT4G19650 "AT4G19650" [Arabido	0.278	0.267	0.333	1.3e-38
TAIR|locus:504954990	414	AT5G45113 "AT5G45113" [Arabido	0.262	0.350	0.312	3.6e-20
TAIR|locus:2153433	500	PTAC15 "AT5G54180" [Arabidopsi	0.682	0.754	0.230	1.8e-09
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.186	0.160	0.293	3.5e-08
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.155	0.169	0.355	9.8e-07
TAIR|locus:2037338	445	AT1G74120 "AT1G74120" [Arabido	0.193	0.240	0.279	5.4e-06
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.188	0.231	0.287	1.3e-05
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.288	0.561	0.235	2e-05

TAIR|locus:2103291 SHOT1 "AT3G60400" [Arabidopsis thaliana (taxid:3702)]

 Score = 1526 (542.2 bits), Expect = 1.4e-156, P = 1.4e-156
 Identities = 294/542 (54%), Positives = 389/542 (71%)

Query:    12 SRHLSS-AAK-LKIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLSKLI 69
             S + S+ AAK  ++P+KY+  AI +AQQA+T+YLH T+S+ +T+AE I+ ++  ++  LI
Sbjct:    12 SHNFSTVAAKHRRVPSKYKSLAIGKAQQAITDYLHTTRSLSYTHAEQIASNASVSIRNLI 71

Query:    70 ADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLL 129
               L + +S P+FS + ++ L YHPINEFEFFFESIGID++EVS FLP  KFF SED  +L
Sbjct:    72 --LKLDFSVPTFSKSLRKHLSYHPINEFEFFFESIGIDYSEVSEFLPEKKFFFSEDRTVL 129

Query:   130 NAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFP 189
             +AA ALS FGFPW+KLGKLYKEE  +F Q   ++ ++L + K+  GFS V ++G CL  P
Sbjct:   130 DAAFALSGFGFPWNKLGKLYKEERLVFVQRPGEIESRLLKFKDI-GFSTVAVIGTCLAIP 188

Query:   190 HVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGK 249
               L G G E G+EI  LF  LK +F +F      E NV+ W  + RKIR+FYD   E  +
Sbjct:   189 RTLCGGG-ELGSEIRCLFVKLKRLFDEFDSHHLFEENVDSWLAVSRKIRIFYDLGCENEE 247

Query:   250 LGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVK 309
             + ELM RNKS+FL+Y EE L+ K  YFCRFGV  ED  LL+L++P I++FDLE  VISV 
Sbjct:   248 MWELMCRNKSLFLEYSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVT 307

Query:   310 GLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNY 369
             G+L H GL   E+ +V++ YPYV GRN++ NLPYV+RA+DL +  F+ + NG + LL +Y
Sbjct:   308 GMLKHFGLRQDEVDAVAQKYPYVFGRNQLKNLPYVLRAIDLHERIFDILKNGNHHLLASY 367

Query:   370 ALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGS 429
              L +PDEDL+RE+ + LE+L  +SRT RH + KL FLH IG+GEN +T+KVL   HGT  
Sbjct:   368 TLMDPDEDLEREYQEGLEEL-QNSRTKRHNIQKLDFLHEIGFGENGITMKVLQHVHGTAV 426

Query:   430 ELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPT 489
             EL +RF  LL +G+ FSK+CM+IR  PKILNQ P +I+ KL FLC ++G SLDYL  FP 
Sbjct:   427 ELHDRFQILLNSGIIFSKICMLIRSAPKILNQKPHSIQDKLRFLCGEMGDSLDYLEVFPA 486

Query:   490 FLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQWLE 549
             +LCFDLE RI PR++FH WLVE G   K+YSIAS+VATSEK+FI+R+YGIHPA PK W E
Sbjct:   487 YLCFDLENRISPRFRFHKWLVEKGFSEKSYSIASIVATSEKAFIARLYGIHPAIPKHWFE 546

Query:   550 CF 551
              F
Sbjct:   547 RF 548

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2170209 AT5G06810 "AT5G06810" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 150/528 (28%), Positives = 253/528 (47%)

Query:    33 KEAQQAVTEYLHYTKSIPFTYAEHISKHSL----NTLSKLIA-DLGVSYSAPSFSSTFQR 87
             K AQ A+ +Y + T+ + F  AE +SK++     N L KL   D+ V            R
Sbjct:   624 KVAQVAMFDYFYQTRGLQFLVAESMSKNAPVFNDNLLKKLNGCDVDVD-DDDDIVKAITR 682

Query:    88 FLRYHPINEFEFFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGK 147
             FL +HP+NEFE F ES+G+  +E S  +P +K FL+ED+ LL       ++G   +K+GK
Sbjct:   683 FLWFHPVNEFEPFLESLGLKPSEFSHLIPCDKMFLNEDAFLLENYHVFWNYGIGREKMGK 742

Query:   148 LYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLF 207
             ++KE   +F   +  L +K+   ++  GFS + L  + +  P +L G   +    +A + 
Sbjct:   743 IFKEAREVFGYETGVLASKIKSYEDL-GFSKLFLSKLIVCSPSILIG---DMNVGLAKVM 798

Query:   208 DDLKTVFVDFGLMSSVEG-NVEVWYD---ICRKIRVFYDFRFEKGKLGELMGRN-KSIFL 262
             + LK +   FG+    E  + EV YD   + R +    D   ++ +L EL+ +  + IF 
Sbjct:   799 EMLKAI--GFGVDWVTENLSEEVSYDWSSMHRCLSFLRDLYVDENELCELIRKMPRLIFE 856

Query:   263 DYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKEL 322
             D  E  L+    +  + G    ++  L  K P+  S  L   V++    L H  L  K++
Sbjct:   857 DSGEWTLIL-AGFEAKLGSSRSELSSLFQKFPQCQS--LGKFVLN----LRHCFLFLKDI 909

Query:   323 KSVSEMYPYVLGRN-KMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDRE 381
                 EM    +G+  ++ +L   +  +         +  G  +L       NP+E     
Sbjct:   910 ----EMDDDEIGKIFRLHSLWIGVSRLKQTSTLLINLKGGKGRLC-QVIQENPEEMKKWI 964

Query:   382 FGDSLEKLLSSS---RTPRHTMNKLTFLHGIGYGENTLTL-KVLAKAHGTGSELQERFDC 437
              G  ++ L ++     T   TM K  FL  +GY EN+  + + L    G GSEL+ERF+ 
Sbjct:   965 MGLRVQPLPATGYKVNTKSKTM-KTQFLLDLGYKENSEEMERALKNFRGKGSELRERFNV 1023

Query:   438 LLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEY 497
             L+  G+    +  M++  P IL Q  + +E K+++L ++LG  L  L  FPT L + L+ 
Sbjct:  1024 LVSFGLTEKDVKDMVKACPSILTQACDILESKVNYLVKELGYPLSTLVTFPTCLKYTLQ- 1082

Query:   498 RIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPK 545
             R+K R+    WL + G       +++++  S+K F +R    HP  PK
Sbjct:  1083 RMKLRFSMFSWLQDRGKADPKLQVSTILVCSDKFFATRFVNRHPDGPK 1130

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2133920 AT4G19650 "AT4G19650" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 52/156 (33%), Positives = 86/156 (55%)

Query:   393 SRTPRHTMNKLTFLHGIGYGENTLTL-KVLAKAHGTGSELQERFDCLLRNGVAFSKLCMM 451
             S   R  + K  FL  +GY EN+  + K L +  G G +LQERFDCL++ G+ ++ +  +
Sbjct:   413 SEDSRKYLEKTEFLLRLGYVENSDEMVKALKQFRGRGDQLQERFDCLVKAGLNYNVVTEI 472

Query:   452 IRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVE 511
             IR  P ILN + + IE+K+  L + LG  ++ L  FP +LC+D++ RI  R+  ++WL E
Sbjct:   473 IRHAPMILNLSKDVIEKKIHSLTELLGYPIESLVRFPAYLCYDMQ-RIHHRFSMYLWLRE 531

Query:   512 NGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQW 547
                     S ++++   +  F+     +HP  P  W
Sbjct:   532 RDAAKPMLSPSTILTCGDARFVKYFVNVHPEGPAIW 567

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504954990 AT5G45113 "AT5G45113" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
 Identities = 46/147 (31%), Positives = 78/147 (53%)

Query:   402 KLTFLHGIGYGENTLTL-KVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILN 460
             K TFL  +GY EN+  + + L K  G G ELQERFDC ++ G+ ++ +  +++  P ILN
Sbjct:   261 KTTFLLKLGYVENSDEMVRALKKFQGRGDELQERFDCFVKAGLDYNVVSQLVKRAPHILN 320

Query:   461 QNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYS 520
             +  + IE+K+  L   L   ++ +   PT+LC+ ++ RI  R+  ++WL E        +
Sbjct:   321 RPKDIIEKKIIMLIDYLVYPIESVIESPTYLCYSMK-RIHQRFTMYIWLRERDAVIPRLT 379

Query:   521 IASMVATSEKSFISRIYGIHPAAPKQW 547
             + ++V  S    +      HP  P  W
Sbjct:   380 LGTVVGISNTLIVPYFVNTHPEGPATW 406

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153433 PTAC15 "AT5G54180" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 96/417 (23%), Positives = 189/417 (45%)

Query:   139 GFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDE 198
             GF  ++   +  +   I S S   + A+++ L++    +   L G+    P++L    +E
Sbjct:    89 GFIEEETEMILAKNPDIKSTSLDKIGARVASLQSLK-INGFPLQGLIAKCPNLLTS--EE 145

Query:   199 WGTEIATLFDDLK----TVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELM 254
             +   I+ L D+L+       V+  L+S V+ ++ + ++  +K+R+       K K+  ++
Sbjct:   146 FDLVISFLVDELEGRLDPELVE-RLLSVVDTSILLSFN--QKVRLLLLHGIPKEKISHVL 202

Query:   255 GR---NKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGL 311
              +   NK ++    E++  + + +   FG     +G++  + P IL+ DL++Q+I     
Sbjct:   203 NKVYLNKLLYQKSVEDI-ERLISFLEPFG----GIGIIA-RRPVILNSDLDSQLIPRVDF 256

Query:   312 LNHL-GLSAKELKSVSEMYPYVLG---RNKMANLPYVIRAVDLQDWFFNKITNGYYKLLG 367
             + +L G       +V    P +L     +    + ++     L      KI + +  ++ 
Sbjct:   257 IRNLSGEDDFATGTVLRRLPAILSYSVEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVIS 316

Query:   368 NYALSN--PDEDLDREFG-DS--LEKLLSSSR-----TPRHTMNKLTFLHGIGYGENTLT 417
                     P  +  +E G DS  + K LS +      +  +  +KL FL  IGY   T  
Sbjct:   317 TSKERKLRPRIEFLKECGFDSPGMFKFLSKAPLILALSENNLSHKLGFLVKIGYKHRTKE 376

Query:   418 LK-VLAKAHGTGSELQERFDCL-LRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQ 475
             L   +     T S+  +R   L L  G++F  +  M    P++L  N  ++E+KL++L +
Sbjct:   377 LAFAMGAVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQVLQYNYTSLEEKLEYLIE 436

Query:   476 DLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSF 532
              +G  ++ L AFP FL + L+ RIK RY+    L   G   +N S+  ++  S + F
Sbjct:   437 YMGREVEELLAFPAFLGYKLDSRIKHRYEEK--LKSRG---ENMSLNKLLTVSAERF 488

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
 Identities = 32/109 (29%), Positives = 54/109 (49%)

Query:   428 GSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAF 487
             G++L+      +  G+ F +L  MI   P +L  N + +  K  +L + +   L  L  F
Sbjct:   494 GTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVDNLRPKYRYLRRTMIRPLQDLIEF 553

Query:   488 PTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRI 536
             P F  + LE RI PR   H  +VEN +   N+ +  M+A +++ F  R+
Sbjct:   554 PRFFSYSLERRIIPR---HTIMVENRV---NFKLRYMLACTDEEFERRV 596

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query:   247 KGKLGELMGRNKSIFLDYPEEVLVQKVEYFCR-FGVGNEDVGLLLLKSPEILSFDLE-TQ 304
             + KLGE + +N    L     V +  V  F R   V  +D+G +L+K PE+L F LE T 
Sbjct:   158 RSKLGEFV-KNYPQVLHASVVVELAPVVKFLRGLDVEKQDLGYVLMKYPELLGFKLEGTM 216

Query:   305 VISVKGLLNHLGLSAKELKSVSEMYPYVLG 334
               SV  L++ +G+S +++  +   YPY+LG
Sbjct:   217 STSVAYLVS-IGVSPRDIGPMVTQYPYLLG 245

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037338 AT1G74120 "AT1G74120" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
 Identities = 31/111 (27%), Positives = 57/111 (51%)

Query:   424 AHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDY 483
             A   G E++ R DCL + G+       ++   P+++    E IE+K++FL   +G  ++ 
Sbjct:   278 AFRAGFEVKLRVDCLCKYGLIRRDAFKVVWKEPRVILYEIEDIEKKIEFLTNRMGFHINC 337

Query:   484 LYAFPTFLCFDLEYRIKPRYKFHMWL-VENGL-CTKNYSIASMVATSEKSF 532
             L   P +L  +L+ +I PRY    +L ++ GL C  +  +  ++  S K F
Sbjct:   338 LADVPEYLGVNLQKQIVPRYNVIDYLKLKGGLGC--DIGLKGLIKPSMKRF 386

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 31/108 (28%), Positives = 54/108 (50%)

Query:   442 GVAFSK--LCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRI 499
             G+ FS+    MM++  P     + ET+ +K + L + +   L+ +   PT L + LE RI
Sbjct:   332 GLGFSRDDFKMMVKRYPCCTAYSGETLRKKFEVLVKMMNWPLEAVVMIPTVLGYSLEKRI 391

Query:   500 KPRYKFHMWLVENGLC-TKNYSIASMVATSEKSFISRIYGIHPA-APK 545
              PR      L+  GL  ++N  I+S++  +++ F+ R    H    PK
Sbjct:   392 VPRSNVIKALMSKGLIGSENPPISSVLVCTDQEFLKRYVMKHDKLVPK 439

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 41/174 (23%), Positives = 80/174 (45%)

Query:   364 KLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGY-GENTLTLK-VL 421
             + L N  +S  ++D+ +        L+SS          LTFL  +G+ G +T+T +  +
Sbjct:   105 RFLSN-EISISEQDIPKSISRCPRLLISS--VDYQLRPALTFLKTLGFVGRDTITSRNTV 161

Query:   422 AKAHGTGSELQERFDCLLRNGVAFSK--LCMMIRLTPKILNQNPET-IEQKLDFLCQDLG 478
                      L  + +  L  G+ F++  +  M+  +P +L  + +  +  K++F  +++ 
Sbjct:   162 LLVSNVERTLIPKIE-YLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMR 220

Query:   479 SSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSF 532
               +  L  FP +  F LE +IKPR   H  L E+G+      ++ M+  S+  F
Sbjct:   221 GDVKELKRFPQYFSFSLERKIKPR---HRLLKEHGILMP---LSEMLKVSDGQF 268

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	552
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	2e-18
pfam02536	345	pfam02536, mTERF, mTERF	1e-06
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	0.004

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 68/291 (23%), Positives = 107/291 (36%), Gaps = 75/291 (25%)

Query: 259 SIFLDYPE-------EVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGL 311
            +   +PE         +  KV+Y    G+    V  +L K P IL FDLE  V      
Sbjct: 215 PMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVEC 274

Query: 312 LNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYAL 371
           L   G+  + L SV   YP +LG      L    +  + Q W  +K+             
Sbjct: 275 LLEFGVRKEALPSVIAQYPDILG------LDLKAKLAEQQYWLTSKL------------- 315

Query: 372 SNPDEDLDRE-FGDSLEKL---LSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGT 427
                 +D E FG  +EKL   +S +R                                 
Sbjct: 316 -----KIDPEDFGRVIEKLPQIVSLNRNV------------------------------- 339

Query: 428 GSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAF 487
                +  + L   G +   +  M+   P+IL  N E ++  L+F  +++   L  L  F
Sbjct: 340 ---ALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEF 396

Query: 488 PTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYG 538
           P +  + LE RIKPRY+    + + G+     S+A  +  S+  F  R+ G
Sbjct: 397 PAYFTYGLESRIKPRYER---VAKKGI---KCSLAWFLNCSDDKFEQRMSG 441

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 60/315 (19%), Positives = 113/315 (35%), Gaps = 43/315 (13%)

Query: 247 KGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVI 306
           K +L +++     I      + +    ++  +  V + D    L K PE L        I
Sbjct: 47  KSELTKIVSTVPKILGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKI 106

Query: 307 SVKGLLNHLGLSAKELKS--VSEMYPYVLGR----------NKMANLPYVIRAV------ 348
               +L  LG+  K L S  +S     V G+           +M   P   + V      
Sbjct: 107 RNVSVLRELGVPPKLLFSLLISR-PRPVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPR 165

Query: 349 ----DLQDWFFNKITNGYYKLLGNYALSNPDEDL-----DREFGDSLEKLLSSSRTPRHT 399
                        +   + K LG    S  D            G S +K L +       
Sbjct: 166 LLLYSSDKTIKPNVE--FLKSLGF---SVEDVWAILKKCPELLGSSEKKKLQT------- 213

Query: 400 MNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKIL 459
             +            ++  K+      +  ++  + + LL  G +  ++  M++  P++L
Sbjct: 214 --QEILKTCGLLEFLSVIKKMPQFVSYSEQKILNKIEFLLGLGFSREEIAKMVKRCPQLL 271

Query: 460 NQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNY 519
             + E +++K +FL +++   L  L  FP    + LE RIKPR      L+  G      
Sbjct: 272 GLSVEKVKKKTEFLVKEMNWPLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSIL-P 330

Query: 520 SIASMVATSEKSFIS 534
           S++SM+  +++ F+ 
Sbjct: 331 SLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 273 VEYFCRFGVGNEDVGLLLLKSPEILSFDLE-TQVISVKGLLNHLGLSAKELKSVSEMYPY 331
           V+Y     V  +D+  +L + PE+L F LE T   SV  L++ +G++ +++  +   +P 
Sbjct: 164 VKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVS-IGVAPRDIGPMLTRFPE 222

Query: 332 VLG 334
           +LG
Sbjct: 223 ILG 225

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	552
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.95
KOG1267	413	consensus Mitochondrial transcription termination	99.79
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.15
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.66
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	92.62
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	90.32

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=3.7e-63  Score=532.62  Aligned_cols=372  Identities=21%  Similarity=0.337  Sum_probs=342.5

Q ss_pred             HHHHhcCCCccccccc-CCCcceeeccccchHHHHHHHHhCCCChhhHHHHHhhhccccccChh-hHHHHHHHHHhhcCC
Q 039791           99 FFFESIGIDHAEVSCF-LPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQ-DLTAKLSRLKNYYGF  176 (552)
Q Consensus        99 ~f~eslGl~~~~~~~~-~P~~l~~ls~d~~l~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~-~l~~~l~~L~~l~G~  176 (552)
                      .|++++|+++.++..+ +|.++      +.++++++||+++|++.++|+    ++|.+++++++ .+.|+++||+++ |+
T Consensus        68 ~~L~~lgi~~~~l~~~~~p~~~------~~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~l-G~  136 (487)
T PLN03196         68 DFLRGIGIDPDELDGLELPSTV------DVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKL-GV  136 (487)
T ss_pred             HHHHHcCCCchhhhccCCCccH------HHHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHc-CC
Confidence            6899999999999887 67544      799999999999999999997    57999999998 499999999999 99


Q ss_pred             ChhHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHHhh
Q 039791          177 SNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGR  256 (552)
Q Consensus       177 s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li~~  256 (552)
                      +++++.++|.++|++|..   +++.++.|+++||                              +++|+++++|++++.+
T Consensus       137 s~~~i~~lI~~~P~lL~~---sve~~L~P~v~fL------------------------------~~lGvs~~~i~~~l~r  183 (487)
T PLN03196        137 TRSSLPELLRRYPQVLHA---SVVVDLAPVVKYL------------------------------QGLDVKRQDIPRVLER  183 (487)
T ss_pred             CHHHHHHHHHhCCceecc---cHHHHHHHHHHHH------------------------------HHcCCCHHHHHHHHHh
Confidence            999999999999999999   7777777766655                              4789999999999999


Q ss_pred             CCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHHhhcCCCHHHHHHHHHhCCcccccc
Q 039791          257 NKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRN  336 (552)
Q Consensus       257 ~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~~lG~s~~~i~~~l~~~P~iL~~~  336 (552)
                      +|++|++++++++.++++||.++|++.++|++++.++|+||+++++++++|+++||.++|++.++|++++.++|++|+++
T Consensus       184 ~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~s  263 (487)
T PLN03196        184 YPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFD  263 (487)
T ss_pred             CchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             ---cccchHHHHHhCCc-hHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHHHHHHHHH-hcCc
Q 039791          337 ---KMANLPYVIRAVDL-QDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLH-GIGY  411 (552)
Q Consensus       337 ---~lk~~~~~L~~lGv-~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~~fl~-~lG~  411 (552)
                         .+++.+.+|.++|+ ++.+..+|..            +|.++.     .+         ..+++..++.|+. ++|+
T Consensus       264 le~~lkp~v~~L~elGv~~~~i~~lI~~------------~P~iL~-----~s---------~e~kl~~~~~fL~~~lG~  317 (487)
T PLN03196        264 LEETVKPNVECLLEFGVRKEALPSVIAQ------------YPDILG-----LD---------LKAKLAEQQYWLTSKLKI  317 (487)
T ss_pred             HHHhHHHHHHHHHHcCCCHHHHHHHHHh------------CCceeE-----ec---------HHHhhhHHHHHHHHhhCC
Confidence               47788999999999 8999999999            998772     11         2457888899985 7999


Q ss_pred             cCCchh--H-HHHHHHhcChhhHHHHHHHHHHcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCCChHHHhhcC
Q 039791          412 GENTLT--L-KVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFP  488 (552)
Q Consensus       412 ~~~~~~--~-~al~~l~~~~~~L~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~l~~~P  488 (552)
                      ++++..  + +.+.++..+++++++|++||+++||+.++|+.||+++|++|++|.++|++|++||+++||++.++|++||
T Consensus       318 s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP  397 (487)
T PLN03196        318 DPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFP  397 (487)
T ss_pred             CHHHHHHHHHhcchhhcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhCh
Confidence            998854  3 6667778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcchhHHHHHHHHHHCCCCCCccccccccccchhHHHHHhcccCCCchHh
Q 039791          489 TFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVATSEKSFISRIYGIHPAAPKQ  546 (552)
Q Consensus       489 ~~L~ysle~rikpR~~~~~~L~~~G~~~~~~sl~~il~~sd~~F~~~~~~~~p~~~~~  546 (552)
                      +||+||+|+||+|||++   |+++|+   +++++++|+|||++|+++|+..|.|+.+.
T Consensus       398 ~~LsySLEkRI~PR~~~---L~~kGl---~~sL~~~L~~sd~~F~~r~v~~y~e~~~~  449 (487)
T PLN03196        398 AYFTYGLESRIKPRYER---VAKKGI---KCSLAWFLNCSDDKFEQRMSGDFIEGEEM  449 (487)
T ss_pred             HHhccChhhhhHHHHHH---HHHcCC---CCCHHHHhccCHHHHHHHHhhhccccccc
Confidence            99999999999999994   889998   68999999999999999999999886543

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=2.4e-50  Score=420.90  Aligned_cols=338  Identities=23%  Similarity=0.354  Sum_probs=243.9

Q ss_pred             HHHHhCCCChhhHHHHHhhhccccccChhh-HHHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHHHHHh
Q 039791          133 CALSSFGFPWDKLGKLYKEEVSIFSQSSQD-LTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLK  211 (552)
Q Consensus       133 ~~L~~~G~~~~~i~~~~~~~P~ll~~~~~~-l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~  211 (552)
                      ++|+++|++..+|.++++++|.++.+++++ +.|+++||.+. |++..++.+++.++|++|..   ++..++.|++++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~-G~s~~~i~~il~~~P~il~~---s~~~~i~p~~~~L~   77 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSL-GFSSSDIAKILSKNPQILSR---SLEKNIIPVFDFLK   77 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHT-T--HHHHHHHHHH-GGGGGS-----HHHHHHHHHHHT
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHC-CCCHHHHHHHHHhChHHHhc---cchhhHHHHHHHHH
Confidence            467888888888888888888888888874 88888888888 88888888888888888888   65666666655544


Q ss_pred             hhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHh
Q 039791          212 TVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLL  291 (552)
Q Consensus       212 ~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~  291 (552)
                                                    ++|.+++++.+++.++|++|..+.++++.+.++||+++|++.+.+.+++.
T Consensus        78 ------------------------------~~~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~  127 (345)
T PF02536_consen   78 ------------------------------SIGLSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLI  127 (345)
T ss_dssp             ------------------------------TTSS-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred             ------------------------------HHcCCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHH
Confidence                                          67888888888888888888887777888888888888888887778888


Q ss_pred             hCCceecccccccHhhHHHHHhhcCCCHHHHHHHHHhCCcccccc---cccchHHHHHhCCc-hHHHHHHHHcccccccc
Q 039791          292 KSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRN---KMANLPYVIRAVDL-QDWFFNKITNGYYKLLG  367 (552)
Q Consensus       292 ~~P~iL~~s~e~~L~~~v~fL~~lG~s~~~i~~~l~~~P~iL~~~---~lk~~~~~L~~lGv-~~~l~~iI~~~~~~l~~  367 (552)
                      .+|.++...  +++.+.++++.++|++++++.+++.++|+++..+   .+++.+.+|+++|+ ++++.+++..       
T Consensus       128 ~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~-------  198 (345)
T PF02536_consen  128 SRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRK-------  198 (345)
T ss_dssp             H-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHH-------
T ss_pred             hcCccccch--hHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhc-------
Confidence            787765544  6688888888888888888888888888766654   36677888888888 8888888888       


Q ss_pred             cccccCChhhhhHhhccchhhhhccCCCchhHHHHHHHHHhcCccCCchhH-HHHHHHhcChhhHHHHHHHHHHcCCchH
Q 039791          368 NYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTL-KVLAKAHGTGSELQERFDCLLRNGVAFS  446 (552)
Q Consensus       368 ~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~~fl~~lG~~~~~~~~-~al~~l~~~~~~L~~r~~~L~~~G~s~~  446 (552)
                           +|..+.               .+.++..+.+..+.+.|...+...+ +.+.++..+.++++++++||.++||+.+
T Consensus       199 -----~P~~l~---------------~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~  258 (345)
T PF02536_consen  199 -----CPRLLS---------------LSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGFSEE  258 (345)
T ss_dssp             -----TTTGGG---------------CGCHC---------------------------THHHHHHHHHHHHHHTTT--HH
T ss_pred             -----ccceec---------------ccccccccccccccccccccccccccccccccccchHhHHHHHHHHHHhcCcHH
Confidence                 887762               2344444444555544444444323 6666666678999999999999999999


Q ss_pred             HHHHHHhhcCcccccChhhHHHHHHHHHHhhCCChHHHhhcCcccccccCCcchhHHHHHHHHHHCCCCCCccccccccc
Q 039791          447 KLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASMVA  526 (552)
Q Consensus       447 ~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~l~~~P~~L~ysle~rikpR~~~~~~L~~~G~~~~~~sl~~il~  526 (552)
                      +|++|++++|+||++|.|++++|++||+++||++.++|+++|+||+||+|+||+|||+++++|+++|. ...+++++|++
T Consensus       259 ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~-~~~~sl~~~l~  337 (345)
T PF02536_consen  259 EIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGL-IINPSLSSMLS  337 (345)
T ss_dssp             HHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTT-GGGGGS-HHHH
T ss_pred             HHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcC-CCCCCHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999997 67899999999


Q ss_pred             cchhHHHH
Q 039791          527 TSEKSFIS  534 (552)
Q Consensus       527 ~sd~~F~~  534 (552)
                      +||++|++
T Consensus       338 ~s~~~F~~  345 (345)
T PF02536_consen  338 CSDEEFLK  345 (345)
T ss_dssp             HHHHHHT-
T ss_pred             ccHHHhcC
Confidence            99999975

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=3.1e-45  Score=393.94  Aligned_cols=371  Identities=17%  Similarity=0.243  Sum_probs=320.3

Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHhhcChHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCcchhHHHHHhcCCCcccc
Q 039791           32 IKEAQQAVTEYLHYTKSIPFTYAEHISKHSLNTLSKLIADLGVSYSAPSFSSTFQRFLRYHPINEFEFFFESIGIDHAEV  111 (552)
Q Consensus        32 ~~~a~~~~~~yL~~~~gl~~~~A~~is~~sp~~~~~ll~~~~~~~~~~~~~~~~~r~l~~~pi~~~e~f~eslGl~~~~~  111 (552)
                      +.+.++.+.+||. .-|+....++..-  -|..++.+-+                          -..||+|+|++++++
T Consensus        59 ~~~~~~~~~~~L~-~lgi~~~~l~~~~--~p~~~~~~~~--------------------------~l~~L~s~G~~~~~i  109 (487)
T PLN03196         59 KLVNREKVLDFLR-GIGIDPDELDGLE--LPSTVDVMRE--------------------------RVEFLHKLGLTIEDI  109 (487)
T ss_pred             hhhhHHHHHHHHH-HcCCCchhhhccC--CCccHHHHHH--------------------------HHHHHHHcCCChHHh
Confidence            5667788999999 6999987765422  2322221111                          115899999999998


Q ss_pred             cccCCCcceeeccccchHHHHHHHHhCCCChhhHHHHHhhhccccccChh-hHHHHHHHHHhhcCCChhHHhhHhhcCcc
Q 039791          112 SCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQ-DLTAKLSRLKNYYGFSNVILVGICLGFPH  190 (552)
Q Consensus       112 ~~~~P~~l~~ls~d~~l~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~-~l~~~l~~L~~l~G~s~~~i~~lv~~~P~  190 (552)
                      .. .|. ++..+.++++.|+++||.++|++..+|++++.++|.++.++++ .+.|+++||+++ |++++++.+++.++|+
T Consensus       110 ~~-~P~-iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~l-Gvs~~~i~~~l~r~P~  186 (487)
T PLN03196        110 NE-YPL-VLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGL-DVKRQDIPRVLERYPE  186 (487)
T ss_pred             cc-CcH-HhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHc-CCCHHHHHHHHHhCch
Confidence            85 576 6678889999999999999999999999999999999999998 599999999999 9999999999999999


Q ss_pred             ccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHH
Q 039791          191 VLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLV  270 (552)
Q Consensus       191 lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~  270 (552)
                      +|+.   +++..+.+.                              ++||.++|++.++|++++.++|++|.+++++++.
T Consensus       187 LL~~---~~e~~l~p~------------------------------v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~  233 (487)
T PLN03196        187 LLGF---KLEGTMSTS------------------------------VAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIK  233 (487)
T ss_pred             hhcC---CHHHHHHHH------------------------------HHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHH
Confidence            9999   666555554                              5556689999999999999999999999999999


Q ss_pred             HHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHHhhcCCCHHHHHHHHHhCCcccccc---cccchHHHH-H
Q 039791          271 QKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRN---KMANLPYVI-R  346 (552)
Q Consensus       271 ~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~~lG~s~~~i~~~l~~~P~iL~~~---~lk~~~~~L-~  346 (552)
                      |+++||.++|++.++|++++.++|++|+++++++++|+++||.++|++.+++..++.++|.+++.+   .+++...++ .
T Consensus       234 P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~  313 (487)
T PLN03196        234 PKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTS  313 (487)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999986   355666777 5


Q ss_pred             hCCc-hHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHHHHHHHHHhcCccCCchh--H-HHHH
Q 039791          347 AVDL-QDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLT--L-KVLA  422 (552)
Q Consensus       347 ~lGv-~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~~fl~~lG~~~~~~~--~-~al~  422 (552)
                      .+|+ .+++..++.+            .|+++               +.+.+++.+|++|++++||++++..  + +.|.
T Consensus       314 ~lG~s~e~i~~~v~k------------~P~il---------------~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~  366 (487)
T PLN03196        314 KLKIDPEDFGRVIEK------------LPQIV---------------SLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQ  366 (487)
T ss_pred             hhCCCHHHHHHHHHh------------cchhh---------------cccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCc
Confidence            8999 8899999988            89876               3467899999999999999998864  3 8888


Q ss_pred             HHhcChhhHHHHHHHHH-HcCCchHHHHHHHhhcCcccccChh-hHHHHHHHHHHhhCCChHHHhhcCcccccccCCcch
Q 039791          423 KAHGTGSELQERFDCLL-RNGVAFSKLCMMIRLTPKILNQNPE-TIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIK  500 (552)
Q Consensus       423 ~l~~~~~~L~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e-~l~~k~~fL~~~mg~~~~~l~~~P~~L~ysle~rik  500 (552)
                      ++..+.++|+++++||+ ++|++.++    |.++|++|+||.| +|+||+++|.++ |+..    .-..+|.+| |+++.
T Consensus       367 lL~~S~~~l~~k~dFlvneMg~~~~~----Iv~fP~~LsySLEkRI~PR~~~L~~k-Gl~~----sL~~~L~~s-d~~F~  436 (487)
T PLN03196        367 ILALNLEIMKPSLEFFKKEMKRPLKE----LVEFPAYFTYGLESRIKPRYERVAKK-GIKC----SLAWFLNCS-DDKFE  436 (487)
T ss_pred             eeeccHHHHHHHHHHHHHHhCCCHHH----HHhChHHhccChhhhhHHHHHHHHHc-CCCC----CHHHHhccC-HHHHH
Confidence            88999999999999999 89999876    5799999999999 999999999875 8732    234567777 55888


Q ss_pred             hHHH
Q 039791          501 PRYK  504 (552)
Q Consensus       501 pR~~  504 (552)
                      .||.
T Consensus       437 ~r~v  440 (487)
T PLN03196        437 QRMS  440 (487)
T ss_pred             HHHh
Confidence            8876

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=3e-36  Score=314.62  Aligned_cols=323  Identities=19%  Similarity=0.332  Sum_probs=229.7

Q ss_pred             HHHHhcCCCccccccc---CCCcceeeccccchHHHHHHHHhCCCChhhHHHHHhhhccccccChh-hHHHHHHHHHhhc
Q 039791           99 FFFESIGIDHAEVSCF---LPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQ-DLTAKLSRLKNYY  174 (552)
Q Consensus        99 ~f~eslGl~~~~~~~~---~P~~l~~ls~d~~l~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~-~l~~~l~~L~~l~  174 (552)
                      .+|++.|.+++.+..+   .|. ++..+.++.+.|.++||++.|++..++++++.++|.++..+.+ .+.|.+++|+++ 
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~-~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~-   79 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPR-LLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSI-   79 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-H-HHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTT-
T ss_pred             hHHHHcCCCHHHHHHHHHhCCc-eEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHH-
Confidence            4566666666666555   465 5567889999999999999999999999999999999999965 699999999999 


Q ss_pred             CCChhHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHH
Q 039791          175 GFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELM  254 (552)
Q Consensus       175 G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li  254 (552)
                      |.+++++.+++.++|++|..   +.+.++.                              +++++|.++|++.+.+..++
T Consensus        80 ~~s~~d~~~~l~r~p~~l~~---~~~~~l~------------------------------~~v~~L~~lGv~~~~~~~~l  126 (345)
T PF02536_consen   80 GLSDEDIVKVLKRYPRILSF---SVEENLS------------------------------PNVAFLRSLGVPPSQIISLL  126 (345)
T ss_dssp             SS-HHHHHHHHHH-SHHHHS------HHHH------------------------------HHHHHHHHTT--HHHHHHHH
T ss_pred             cCCHHHHHHHHHhcchhhcc---chHhhhh------------------------------hhhhHHhhcCCcHHHHHHHH
Confidence            99999999999999999998   4443444                              45667778999999899999


Q ss_pred             hhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHHhhcCCCHHHHHHHHHhCCcccc
Q 039791          255 GRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLG  334 (552)
Q Consensus       255 ~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~~lG~s~~~i~~~l~~~P~iL~  334 (552)
                      ...|.++...  +++.+.++++.++|++.+++++++.++|+++..+.+++++|+++||+++|++.+++.+++.++|.+++
T Consensus       127 ~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~  204 (345)
T PF02536_consen  127 ISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLS  204 (345)
T ss_dssp             HH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGG
T ss_pred             HhcCccccch--hHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceec
Confidence            9998877655  89999999999999999999999999999888888999999999999999999999999999999999


Q ss_pred             ccc---ccchHHHHHhCCchHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHHHHHHHHHhcCc
Q 039791          335 RNK---MANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGY  411 (552)
Q Consensus       335 ~~~---lk~~~~~L~~lGv~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~~fl~~lG~  411 (552)
                      .+.   ++....++...|..+.  .++..            +|.++.               .+.+++..++++|+++||
T Consensus       205 ~s~~~~l~~~~~l~~~~~~~~~--~~i~~------------~p~il~---------------~~~~~l~~~i~~L~~lG~  255 (345)
T PF02536_consen  205 LSVEKILEPVLYLLSSGGVEEE--RVIKK------------FPQILS---------------LSEEKLKPKIEFLQSLGF  255 (345)
T ss_dssp             CGCHC-----------------------------------------T---------------HHHHHHHHHHHHHHTTT-
T ss_pred             cccccccccccccccccccccc--ccccc------------cccccc---------------cchHhHHHHHHHHHHhcC
Confidence            974   3445555555555333  66666            887762               256789999999999999


Q ss_pred             cCCchh-H--HHHHHHhcChhhHHHHHHHHH-HcCCchHHHHHHHhhcCcccccChh-hHHHH---HHHHHHhhCCChHH
Q 039791          412 GENTLT-L--KVLAKAHGTGSELQERFDCLL-RNGVAFSKLCMMIRLTPKILNQNPE-TIEQK---LDFLCQDLGSSLDY  483 (552)
Q Consensus       412 ~~~~~~-~--~al~~l~~~~~~L~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e-~l~~k---~~fL~~~mg~~~~~  483 (552)
                      ++++.. |  +.|.++..+.++++++++||. ++|++.++|    .++|++|+||.| +|+||   +++|.+ .|.  ..
T Consensus       256 s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i----~~~P~~l~~sLe~ri~PR~~~~~~l~~-~g~--~~  328 (345)
T PF02536_consen  256 SEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEI----VEFPQYLSYSLEKRIKPRYEVLKVLKS-KGL--II  328 (345)
T ss_dssp             -HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHH----HHSCHHHCS-HHHHHHHHHHHHHTT---TTT--GG
T ss_pred             cHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHH----hhCCceeEechhhhhhhHHHHHHHHHH-CcC--CC
Confidence            998754 4  778888889888999999999 899999875    699999999998 89999   666655 363  22


Q ss_pred             HhhcCcccccc
Q 039791          484 LYAFPTFLCFD  494 (552)
Q Consensus       484 l~~~P~~L~ys  494 (552)
                      ......+|++|
T Consensus       329 ~~sl~~~l~~s  339 (345)
T PF02536_consen  329 NPSLSSMLSCS  339 (345)
T ss_dssp             GGGS-HHHHHH
T ss_pred             CCCHHHHhhcc
Confidence            33334444444

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.95  E-value=1.1e-27  Score=255.44  Aligned_cols=327  Identities=21%  Similarity=0.323  Sum_probs=268.3

Q ss_pred             hHHHHHHHHHhhcCcchhHHHHHhcCCCccccccc---CCCcceeeccccchHHHHHHHHhCCCChhhHHHHHhhhcccc
Q 039791           80 SFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCF---LPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIF  156 (552)
Q Consensus        80 ~~~~~~~r~l~~~pi~~~e~f~eslGl~~~~~~~~---~P~~l~~ls~d~~l~~~~~~L~~~G~~~~~i~~~~~~~P~ll  156 (552)
                      .+.+.+......+|.+.++ +|+|+|+++++++++   .|+ ++..+.++.+.+...+|++.|++...++++++.-|.++
T Consensus        78 ~~~~~~~~~~~~~p~s~~~-~l~s~g~~~~~i~s~i~~~p~-ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il  155 (413)
T KOG1267|consen   78 KLSREVSSEDSVNPSSVLS-SLRSLGFTDSQISSIILSSPK-LLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKIL  155 (413)
T ss_pred             HHHHHHHhhhccCcHHHHH-HHHhcCCchhhcccccccCch-hhhccchhhhhhhhhhhhccCccccccchhhhccHHHH
Confidence            3444555566678888887 899999999999988   444 66788888999999999999999999999998888888


Q ss_pred             ccChh-hHHHHHHHHHhhcC--CChhHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhH
Q 039791          157 SQSSQ-DLTAKLSRLKNYYG--FSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDI  233 (552)
Q Consensus       157 ~~~~~-~l~~~l~~L~~l~G--~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~  233 (552)
                      +..-+ .+...++++.+. +  +....+.+++...|.....                                   |..+
T Consensus       156 ~~~~~~~~~~~~~~l~~~-~~~~~~s~~~~~~~~~~~~~~~-----------------------------------~~~v  199 (413)
T KOG1267|consen  156 LKSKGESLSTFIEFLKSI-PPELLSSVVERLLTPVPSFLLN-----------------------------------ENSV  199 (413)
T ss_pred             HhhcCCchhhHHHHhhcc-chhhhhhHHHHhcccccccccc-----------------------------------cccc
Confidence            87776 588999999988 5  6666666666666533322                                   1122


Q ss_pred             hHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHHh
Q 039791          234 CRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLN  313 (552)
Q Consensus       234 ~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~  313 (552)
                      . .++++.++|....++...+..+|+.+....  .+...+.++..+|+.+..  +++...|.+++++.+++++|++++|+
T Consensus       200 ~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~  274 (413)
T KOG1267|consen  200 E-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLK  274 (413)
T ss_pred             c-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccccHHHHHHHHH
Confidence            2 566778999999999999999999998664  788999999999988776  89999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHhCCcccccccccchHHHHHhCCchHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccC
Q 039791          314 HLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSS  393 (552)
Q Consensus       314 ~lG~s~~~i~~~l~~~P~iL~~~~lk~~~~~L~~lGv~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s  393 (552)
                      ++|++.+||.+++.++|++|+.+.-+.                                                     
T Consensus       275 ~~Gf~~~di~~~~~k~P~~l~~s~~~~-----------------------------------------------------  301 (413)
T KOG1267|consen  275 SLGFSREEIWKMVKKCPQILGYSVKKN-----------------------------------------------------  301 (413)
T ss_pred             HcCCCHHHHHHHHHhCchheEeehhhh-----------------------------------------------------
Confidence            999999999999999999999873111                                                     


Q ss_pred             CCchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHHHcCCchHHHHHHHhhcCcccccChh-hHHHHHHH
Q 039791          394 RTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPE-TIEQKLDF  472 (552)
Q Consensus       394 ~~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e-~l~~k~~f  472 (552)
                            ..+++++.+.  .++  .++-+.++.+++.+++++++|+...|++..++..|++++|+++++|.+ .++++.+|
T Consensus       302 ------~~~~~~~~~~--~~~--~~k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~  371 (413)
T KOG1267|consen  302 ------LKTTEYLLKN--PKH--ILKFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEY  371 (413)
T ss_pred             ------hHHHHHHHhc--chh--hhhhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHH
Confidence                  1112222221  111  114444556678999999999999999999999999999999999999 99999999


Q ss_pred             HHHhhCCChHHHhhcCcccccccCCcchhHHHHHHHHHHC
Q 039791          473 LCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVEN  512 (552)
Q Consensus       473 L~~~mg~~~~~l~~~P~~L~ysle~rikpR~~~~~~L~~~  512 (552)
                      +.+.|++|.+.++.+|+++.|++|+|+.||+.++.++..+
T Consensus       372 ~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  372 LLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             HHHHcCchHHHHhccchhhccchhhcchhHHHHHHHHhcc
Confidence            9999999999999999999999999999999987776654

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.79  E-value=8.6e-19  Score=187.17  Aligned_cols=247  Identities=15%  Similarity=0.261  Sum_probs=208.2

Q ss_pred             hhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHH
Q 039791          231 YDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKG  310 (552)
Q Consensus       231 ~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~  310 (552)
                      .+...++++|++.|+++.+|.+++..+|.++..+.++.+.++..+|...|++..+++.++...|.+|+.+...++.+.++
T Consensus        89 ~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~  168 (413)
T KOG1267|consen   89 VNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIE  168 (413)
T ss_pred             cCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999888889999999


Q ss_pred             HHhhcC--CCHHHHHHHHHhCCccccc-ccccchHHHHHhCCc-hHHHHHHHHcccccccccccccCChhhhhHhhccch
Q 039791          311 LLNHLG--LSAKELKSVSEMYPYVLGR-NKMANLPYVIRAVDL-QDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSL  386 (552)
Q Consensus       311 fL~~lG--~s~~~i~~~l~~~P~iL~~-~~lk~~~~~L~~lGv-~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v  386 (552)
                      ||++++  .....+.+.+...|..... ..+. .+.+++.+|+ +..+...+..            +|....        
T Consensus       169 ~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~-~~~~~~~lg~~~~~L~~~l~~------------~~~~~~--------  227 (413)
T KOG1267|consen  169 FLKSIPPELLSSVVERLLTPVPSFLLNENSVE-RLDIRRELGVKPRLLKSLLES------------QPRPVL--------  227 (413)
T ss_pred             HhhccchhhhhhHHHHhccccccccccccccc-cchhhHHhCCCHHHHHHHHhc------------Ccccee--------
Confidence            999975  6777777777777654443 2345 8899999999 8888877777            676552        


Q ss_pred             hhhhccCCCchhHHHHHHHHHhcCccCCchhH-HHHHHHhc-ChhhHHHHHHHHHHcCCchHHHHHHHhhcCcccccChh
Q 039791          387 EKLLSSSRTPRHTMNKLTFLHGIGYGENTLTL-KVLAKAHG-TGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPE  464 (552)
Q Consensus       387 ~~~~~~s~~~~~~~~k~~fl~~lG~~~~~~~~-~al~~l~~-~~~~L~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e  464 (552)
                              ....+..++.++..+||++.+.++ +|+..+.+ +++++++++++|.+.||+.+||+.|++++|++|++|.+
T Consensus       228 --------~~~~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~  299 (413)
T KOG1267|consen  228 --------LYLKLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVK  299 (413)
T ss_pred             --------eehhhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehh
Confidence                    112678889999999999999877 88888876 58999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhCCChHHHhhcCcccccccCCcchhHHHHHHHHHHCCC
Q 039791          465 TIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGL  514 (552)
Q Consensus       465 ~l~~k~~fL~~~mg~~~~~l~~~P~~L~ysle~rikpR~~~~~~L~~~G~  514 (552)
                      .+..+++|+.+.    .+++.++|++++++.. .+.+|++   .+...|+
T Consensus       300 ~~~~~~~~~~~~----~~~~~k~p~~l~~s~~-~l~~~ie---~l~~~g~  341 (413)
T KOG1267|consen  300 KNLKTTEYLLKN----PKHILKFPQLLRSSED-KLKPRIE---FLLSLGF  341 (413)
T ss_pred             hhhHHHHHHHhc----chhhhhhhhhhhccch-hhhhhHH---HHHHcCC
Confidence            888888888876    3338888888866644 8888887   4556554

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.15  E-value=0.00033  Score=45.36  Aligned_cols=30  Identities=30%  Similarity=0.580  Sum_probs=26.9

Q ss_pred             HHHhhcCcccccChhhHHHHHHHHHHhhCCC
Q 039791          450 MMIRLTPKILNQNPETIEQKLDFLCQDLGSS  480 (552)
Q Consensus       450 ~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~  480 (552)
                      .++.++|.+|+++.++++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            5789999999999779999999999 68874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.66  E-value=0.0011  Score=42.81  Aligned_cols=28  Identities=32%  Similarity=0.587  Sum_probs=15.0

Q ss_pred             HHhhCCceecccccccHhhHHHHHhhcCC
Q 039791          289 LLLKSPEILSFDLETQVISVKGLLNHLGL  317 (552)
Q Consensus       289 il~~~P~iL~~s~e~~L~~~v~fL~~lG~  317 (552)
                      ++.++|++++++ +++++++++||+++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            445555555555 4555555555555554

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=92.62  E-value=0.45  Score=49.46  Aligned_cols=245  Identities=14%  Similarity=0.103  Sum_probs=134.5

Q ss_pred             hhCCCChhHHHHHHhhCCcceecCch-------hhHHHHHHHHH--hcCCChhHHHHHHhhCCceecccccccH-hhHHH
Q 039791          241 YDFRFEKGKLGELMGRNKSIFLDYPE-------EVLVQKVEYFC--RFGVGNEDVGLLLLKSPEILSFDLETQV-ISVKG  310 (552)
Q Consensus       241 ~~lG~~~~~i~~li~~~P~lL~~~~~-------~~l~~~v~fL~--~lG~~~~~i~~il~~~P~iL~~s~e~~L-~~~v~  310 (552)
                      ..+|++...+...+.+||.++.....       =.+.+...-|.  +..+-.+.-..++.+--.+|.++.++.| -.++.
T Consensus        45 ~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~  124 (335)
T PF11955_consen   45 RQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIA  124 (335)
T ss_pred             HhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHH
Confidence            46899778999999999999866431       01222222222  1111100011222222345666665554 35667


Q ss_pred             HHh-hcCCCHHHHHHHHHhCCccccccc------ccchHHHHHhCCc---hHHHHHH--HHcccccccccccccCChhhh
Q 039791          311 LLN-HLGLSAKELKSVSEMYPYVLGRNK------MANLPYVIRAVDL---QDWFFNK--ITNGYYKLLGNYALSNPDEDL  378 (552)
Q Consensus       311 fL~-~lG~s~~~i~~~l~~~P~iL~~~~------lk~~~~~L~~lGv---~~~l~~i--I~~~~~~l~~~~l~~~P~~l~  378 (552)
                      -++ ++|++.+-..+++.+||..|....      .-.++.|=.++.+   +.+...-  ...+.  -...-+. +|-   
T Consensus       125 ~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~--~~~~~~~-Fp~---  198 (335)
T PF11955_consen  125 HLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKRED--GFDRPLA-FPV---  198 (335)
T ss_pred             HHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhcccccccc--ccCCcee-eee---
Confidence            776 499999999999999999988632      1113444444544   1111110  00000  0000000 110   


Q ss_pred             hHhhccchhhhhccCCCchhHHHHHHHHHhc----------CccCCchhH--HHHHHHhc------ChhhHHHHHHHHH-
Q 039791          379 DREFGDSLEKLLSSSRTPRHTMNKLTFLHGI----------GYGENTLTL--KVLAKAHG------TGSELQERFDCLL-  439 (552)
Q Consensus       379 ~~~~g~~v~~~~~~s~~~~~~~~k~~fl~~l----------G~~~~~~~~--~al~~l~~------~~~~L~~r~~~L~-  439 (552)
                      ..--|.+         -.....++++-++++          |+++++..+  +|..+++-      .+....+++..|+ 
T Consensus       199 ~fp~G~~---------l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~  269 (335)
T PF11955_consen  199 SFPKGFR---------LKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRK  269 (335)
T ss_pred             cCCCCcc---------ccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHH
Confidence            0000111         224566677777665          445556666  77776543      2567788899999 


Q ss_pred             HcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCCChHHH-hhcCcccccccCCcchhHHHHHHHHHHCCC
Q 039791          440 RNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYL-YAFPTFLCFDLEYRIKPRYKFHMWLVENGL  514 (552)
Q Consensus       440 ~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~l-~~~P~~L~ysle~rikpR~~~~~~L~~~G~  514 (552)
                      ++|++ +.+..|+.+||.|+..|...-. -.=||.+  +|.-.++ ..+|-+       .++-||.   .|...|.
T Consensus       270 ef~lp-~k~~~~l~rHPgIFYvS~kg~~-~TVfLrE--AY~~~~Liek~Pl~-------~~r~k~~---~Lm~~~~  331 (335)
T PF11955_consen  270 EFGLP-QKFRRLLLRHPGIFYVSLKGKR-HTVFLRE--AYDGGELIEKHPLV-------VIREKFL---ELMQEGR  331 (335)
T ss_pred             HhCCc-HHHHHHHHhCCCeEEEeccCCc-eEEEEee--ccCCCCCCCCCchH-------HHHHHHH---HHHhhcc
Confidence            99999 5789999999999999976211 1125555  4544443 445542       3555554   4555553

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=90.32  E-value=3.5  Score=38.64  Aligned_cols=51  Identities=24%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             HHHHhcCCC-cccccccCCCcceeec-cccchHHHHHHHHhCCCChhhHHHHHhhh
Q 039791           99 FFFESIGID-HAEVSCFLPANKFFLS-EDSCLLNAACALSSFGFPWDKLGKLYKEE  152 (552)
Q Consensus        99 ~f~eslGl~-~~~~~~~~P~~l~~ls-~d~~l~~~~~~L~~~G~~~~~i~~~~~~~  152 (552)
                      -|+|..|+= |+.-.   +.+-=.++ +|-.-...+..|++.|++-+.|..++...
T Consensus        19 RyYe~~GLl~p~~r~---~~gyR~Y~~~dl~rL~~I~~lr~~G~sL~eI~~ll~~~   71 (172)
T cd04790          19 LYYERIGLLSPSARS---ESNYRLYGERDLERLEQICAYRSAGVSLEDIRSLLQQP   71 (172)
T ss_pred             HHHHHCCCCCCCccC---CCCCccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            368889974 32211   11111122 23344578888999999999999987543

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	552
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	1e-27
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	8e-10
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	4e-09
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	4e-07
3mva_O	343	Transcription termination factor, mitochondrial; a	5e-19
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-09
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  111 bits (278), Expect = 1e-27
 Identities = 38/271 (14%), Positives = 80/271 (29%), Gaps = 29/271 (10%)

Query: 272 KVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPY 331
            ++     GV    +      +  +L  D E  +  +   L  +G+   +L +       
Sbjct: 8   TLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHA 67

Query: 332 VLGRNKMANLPYVIRAVD-LQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLL 390
           +   +    L  +   V  L    F                     D+ +    +   L 
Sbjct: 68  IFSED----LENLKTRVAYLHSKNF------------------SKADVAQMVRKAPFLLN 105

Query: 391 SSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSE--LQERFDCLLRNGVAFSKL 448
            S     + +        +   +    +  L +      E   +      L  G   +++
Sbjct: 106 FSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEI 165

Query: 449 CMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMW 508
             MI   PK+L  N   + +  DF+   +      +  FP      L  ++K R+ F  +
Sbjct: 166 QHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTY 224

Query: 509 LVENGLCTK---NYSIASMVATSEKSFISRI 536
           L             S+  +V+  ++ F   I
Sbjct: 225 LGRAQYDPAKPNYISLDKLVSIPDEIFCEEI 255

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 59.1 bits (143), Expect = 8e-10
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 9/139 (6%)

Query: 219 LMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCR 278
           L    E +++      + +    D   E  +LG  + +N +IF     E L  +V Y   
Sbjct: 33  LRLDFEKDIK------QMLLFLKDVGIEDNQLGAFLTKNHAIFS-EDLENLKTRVAYLHS 85

Query: 279 FGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKM 338
                 DV  ++ K+P +L+F +E     +      L LS K+ + +    P +L  +  
Sbjct: 86  KNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE 145

Query: 339 ANLPYVIRAVDLQDWFFNK 357
                +       +  F  
Sbjct: 146 PVKENMKVY--RLELGFKH 162

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 33/239 (13%), Positives = 79/239 (33%), Gaps = 38/239 (15%)

Query: 100 FFESIGIDHAEVSCFLPANKFFLSED--SCLLNAACALSSFGFPWDKLGKLYKEEVSIFS 157
               +G+D +++     A    L  D    +      L   G   ++LG    +  +IFS
Sbjct: 11  KLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFS 70

Query: 158 QSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDF 217
           +  ++L  +++ L +   FS   +  +    P +L                         
Sbjct: 71  EDLENLKTRVAYLHSK-NFSKADVAQMVRKAPFLL------------------------- 104

Query: 218 GLMSSVEGNVEVWYDICRKIRVFY-DFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYF 276
               SVE        +  ++  F  +      K  +L+ R   +     E V      Y 
Sbjct: 105 --NFSVE-------RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYR 155

Query: 277 CRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGR 335
              G  + ++  ++ + P++L+ +      +   + N + +    +    +++   L +
Sbjct: 156 LELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFK 214

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 30/205 (14%), Positives = 69/205 (33%), Gaps = 38/205 (18%)

Query: 135 LSSFGFPWDKLGKLYKEEVSIFSQSSQ-DLTAKLSRLKNYYGFSNVILVGICLGFPHVLA 193
           L   G    K+ K  +    +     + D+   L  LK+  G  +  L         +  
Sbjct: 12  LVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDV-GIEDNQLGAFLTKNHAIF- 69

Query: 194 GNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGEL 253
                                        +E       ++  ++   +   F K  + ++
Sbjct: 70  --------------------------SEDLE-------NLKTRVAYLHSKNFSKADVAQM 96

Query: 254 MGRNKSIFLDYPEEVLVQKVEYFCR-FGVGNEDVGLLLLKSPEILSFDLETQVISVKGLL 312
           + +   + L++  E L  ++ +F +   +  +    L+++ P +L+  LE    ++K   
Sbjct: 97  VRKAPFL-LNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYR 155

Query: 313 NHLGLSAKELKSVSEMYPYVLGRNK 337
             LG    E++ +    P +L  NK
Sbjct: 156 LELGFKHNEIQHMITRIPKMLTANK 180

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 87.8 bits (217), Expect = 5e-19
 Identities = 44/312 (14%), Positives = 97/312 (31%), Gaps = 35/312 (11%)

Query: 235 RKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSP 294
                       K  +  ++ R          E L ++ + + +    + ++  +L +SP
Sbjct: 53  DLKMFLLSKGASKEVIASIISRYPRAIT-RTPENLSKRWDLWRKIVTSDLEIVNILERSP 111

Query: 295 EIL-SFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDW 353
           E     +    + +    L  +GL+ K L  +    P     +   N   V     LQ  
Sbjct: 112 ESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEF---LQAA 168

Query: 354 FFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGE 413
             +   N     +      NP          S +++             + FL       
Sbjct: 169 GLSLGHNDPADFVRKIIFKNP-----FILIQSTKRV----------KANIEFLRSTFNLN 213

Query: 414 NTLTLKVLAKAHGTGSELQERF---------DCLLRNGVAFSKLCMMIRLTPKILNQNPE 464
           +   L ++        +L   +         + L   G    ++   +   P ++    +
Sbjct: 214 SEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEK 273

Query: 465 TIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKNYSIASM 524
               K+D L  +   S+  +   P  L   +   +K R K    LV  G      +I  +
Sbjct: 274 KFNDKIDCL-MEENISISQIIENPRVLDSSIS-TLKSRIKE---LVNAGCNLSTLNIT-L 327

Query: 525 VATSEKSFISRI 536
           ++ S+K + +++
Sbjct: 328 LSWSKKRYEAKL 339

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 41/258 (15%), Positives = 78/258 (30%), Gaps = 42/258 (16%)

Query: 272 KVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPY 331
            ++     GV   D+ +   + P +    +      +K  L   G S + + S+   YP 
Sbjct: 22  LLKNLLTMGV---DIDMARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPR 77

Query: 332 VLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLS 391
            + R                             L      S  D ++      S E    
Sbjct: 78  AITRTPENLSKRW-------------------DLWRKIVTS--DLEIVNILERSPE-SFF 115

Query: 392 SSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSE----LQERFDCLLRNGVAFS- 446
            S    +  N + FL+ +G     L  ++L  A  T S      ++  + L   G++   
Sbjct: 116 RSNNNLNLENNIKFLYSVGLTRKCL-CRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGH 174

Query: 447 -----KLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAF-----PTFLCFDLE 496
                 +  +I   P IL Q+ + ++  ++FL      + + L           L    +
Sbjct: 175 NDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSND 234

Query: 497 YRIKPRYKFHMWLVENGL 514
           Y  +        L   G 
Sbjct: 235 YARRSYANIKEKLFSLGC 252

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 40/263 (15%), Positives = 77/263 (29%), Gaps = 21/263 (7%)

Query: 58  SKHSLNTLSKLIADLGVSYSA-PSFSSTFQRFLRYHP--INEFEFFFESIGIDHAEVSCF 114
              +   L   +   G S     S  S + R +   P  +++    +  I     E+   
Sbjct: 47  MITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNI 106

Query: 115 L---PANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLK 171
           L   P + F  + +  L N    L S G     L +L       FS S       +  L+
Sbjct: 107 LERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQ 166

Query: 172 NYY-----GFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGN 226
                         +  I    P +L  +       I  L         +  ++    G 
Sbjct: 167 AAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGA 226

Query: 227 VEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYP------EEVLVQKVEYFCRFG 280
             +        R + + + +   LG      +   L YP      E+    K++      
Sbjct: 227 EILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEEN 286

Query: 281 VGNEDVGLLLLKSPEILSFDLET 303
           +        ++++P +L   + T
Sbjct: 287 ISISQ----IIENPRVLDSSIST 305

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 2e-11
 Identities = 89/622 (14%), Positives = 182/622 (29%), Gaps = 172/622 (27%)

Query: 22  KIPTKYRPRAIKEAQQAVTEYLHYTKSIPFTYAE--HI--SKHSLNTLSKLIADLGVSYS 77
            I + +    +        +     KSI  +  E  HI  SK +++   +L     +S  
Sbjct: 20  DILSVFEDAFVDNFD--CKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQ 75

Query: 78  APSFSSTFQRFLRYHPINEFEFFFESIGIDHAEVSCFLPA--NKFFLSEDSCLLNAACAL 135
                   Q+F+       ++F    I     E     P+   + ++ +   L N     
Sbjct: 76  ----EEMVQKFVEEVLRINYKFLMSPI---KTE--QRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 136 SSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGF-PHVLAG 194
           +             K  VS      + L   L  L+      NV++ G+ LG     +A 
Sbjct: 127 A-------------KYNVSRLQPYLK-LRQALLELRPA---KNVLIDGV-LGSGKTWVAL 168

Query: 195 NG--DEWGTEIATLFDDLKTVF-VDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGK-- 249
           +        ++    D    +F ++    +S E  +E+   +  +I   +  R +     
Sbjct: 169 DVCLSY---KVQCKMDF--KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 250 ---LGELMGRNKSIFL--DYPEEVLV-------QKVEYF---CR---------------- 278
              +  +    + +     Y   +LV       +    F   C+                
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 279 -----FGVGNEDVGL-------LLLKSPEILSFDLETQVISVKGL-LNHLGLSAKELKSV 325
                  + +  + L       LLLK  +    DL  +V++     L+ +  S ++  + 
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 326 SEMYPYVLGRNKMANLPYVIRA-------VDLQDWF-----FN---KITNGYYKLLGNYA 370
            + + +V   +K+     +I +        + +  F     F     I      LL    
Sbjct: 344 WDNWKHV-NCDKLTT---IIESSLNVLEPAEYRKMFDRLSVFPPSAHIP---TILLSLIW 396

Query: 371 LSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSE 430
                 D+       + KL   S   +        +  I Y E  + L+     H     
Sbjct: 397 FDVIKSDVM----VVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALH---RS 448

Query: 431 LQERF---DCLLRNGVAFSKLCM-------------------MIRLTPKILNQNPETIEQ 468
           + + +        +        +                    + L   +   +   +EQ
Sbjct: 449 IVDHYNIPKTFDSDD--LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQ 505

Query: 469 KL---DFLCQDLGSSLDYLYAFPTFLCFDLE-YR-----IKPRY--------KFHMWLVE 511
           K+          GS L+ L          L+ Y+       P+Y         F   + E
Sbjct: 506 KIRHDSTAWNASGSILNTLQ--------QLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 512 NGLCTKNYSIASMVATSEKSFI 533
           N +C+K   +  +   +E   I
Sbjct: 558 NLICSKYTDLLRIALMAEDEAI 579

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	552
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.97
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.9
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.03
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	88.7
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	83.42
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	81.44
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	81.13

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=3.1e-46  Score=387.70  Aligned_cols=306  Identities=16%  Similarity=0.223  Sum_probs=261.4

Q ss_pred             HHHHHHHHhCCCChhhHHHHHhhhccccccChhhHHHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHHH
Q 039791          129 LNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFD  208 (552)
Q Consensus       129 ~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~  208 (552)
                      ...+.+|.++|++.+++   .+.+|.++..+++...++++||+++ |++++++.+++.++|.+|..   ++ .++.    
T Consensus        20 ~~~v~~L~s~Gl~~~~~---~~~~p~l~~~s~~~~~~vl~fL~~~-G~s~~~i~~iv~~~P~lL~~---~~-~~l~----   87 (343)
T 3mva_O           20 EDLLKNLLTMGVDIDMA---RKRQPGVFHRMITNEQDLKMFLLSK-GASKEVIASIISRYPRAITR---TP-ENLS----   87 (343)
T ss_dssp             CCHHHHHHHHTCCHHHH---HHHCGGGGGCSCCCHHHHHHHHHHT-TCCHHHHHHHHHHCGGGGGC---CH-HHHH----
T ss_pred             HHHHHHHHHcCCCHHHH---HHhCchhhccCcccHHHHHHHHHHc-CCCHHHHHHHHHhCcHHHhC---CH-HHHH----
Confidence            46889999999997766   4556999999999999999999999 99999999999999999998   53 2444    


Q ss_pred             HHhhhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCch-hhHHHHHHHHHhcCCChhHHH
Q 039791          209 DLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPE-EVLVQKVEYFCRFGVGNEDVG  287 (552)
Q Consensus       209 ~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~-~~l~~~v~fL~~lG~~~~~i~  287 (552)
                                                ++++||+++|++++++++++.++|++|..+.+ +++.|+++||+++|++.++|+
T Consensus        88 --------------------------p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~  141 (343)
T 3mva_O           88 --------------------------KRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLC  141 (343)
T ss_dssp             --------------------------HHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             --------------------------HHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHH
Confidence                                      45566668999999999999999996555555 489999999999999999999


Q ss_pred             HHHhhCCceecccccccHhhHHHHHhhcCCC------HHHHHHHHHhCCcccccc--cccchHHHHH-hCCc-hHHHHHH
Q 039791          288 LLLLKSPEILSFDLETQVISVKGLLNHLGLS------AKELKSVSEMYPYVLGRN--KMANLPYVIR-AVDL-QDWFFNK  357 (552)
Q Consensus       288 ~il~~~P~iL~~s~e~~L~~~v~fL~~lG~s------~~~i~~~l~~~P~iL~~~--~lk~~~~~L~-~lGv-~~~l~~i  357 (552)
                      +++.++|++++++++++ +++++||+++|++      .+.|.+++.++|.+|+.+  .+++.+.+++ ++|+ .+++..+
T Consensus       142 ~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~  220 (343)
T 3mva_O          142 RLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVL  220 (343)
T ss_dssp             HHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            99999999999998876 9999999987764      778999999999999987  3556677777 4888 6667666


Q ss_pred             HHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHH
Q 039791          358 ITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDC  437 (552)
Q Consensus       358 I~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~  437 (552)
                      +..            .|..+                                              +..+.+.++++++|
T Consensus       221 i~~------------~~~~~----------------------------------------------l~~s~~~l~~~~~~  242 (343)
T 3mva_O          221 ICG------------PGAEI----------------------------------------------LDLSNDYARRSYAN  242 (343)
T ss_dssp             HHT------------TTGGG----------------------------------------------GGCCTTHHHHHHHH
T ss_pred             Hhc------------CChHH----------------------------------------------hhccHHHHHHHHHH
Confidence            665            33222                                              11234556666655


Q ss_pred             HH----HcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCCChHHHhhcCcccccccCCcchhHHHHHHHHHHCC
Q 039791          438 LL----RNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENG  513 (552)
Q Consensus       438 L~----~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~l~~~P~~L~ysle~rikpR~~~~~~L~~~G  513 (552)
                      +.    ++||+.+||+.||.++|++|++|.|+|++|++||++ ||++.++|+++|++|+||+| ||+|||+   +|+++|
T Consensus       243 l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g  317 (343)
T 3mva_O          243 IKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAG  317 (343)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCC
Confidence            55    699999999999999999999999999999999999 99999999999999999999 9999997   899999


Q ss_pred             CCCCccccc--cccccchhHHHHHhccc
Q 039791          514 LCTKNYSIA--SMVATSEKSFISRIYGI  539 (552)
Q Consensus       514 ~~~~~~sl~--~il~~sd~~F~~~~~~~  539 (552)
                      +   +++++  +||++||++|.++|.+.
T Consensus       318 ~---~~~~~~~~~l~~s~~~F~~~~~~~  342 (343)
T 3mva_O          318 C---NLSTLNITLLSWSKKRYEAKLKKL  342 (343)
T ss_dssp             C---CSSSSCGGGGGSCHHHHHHHHHHT
T ss_pred             C---CCCCCcchhhcCCHHHHHHHHhcc
Confidence            8   56666  99999999999999864

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=1.5e-43  Score=355.94  Aligned_cols=258  Identities=20%  Similarity=0.306  Sum_probs=233.2

Q ss_pred             HHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhHhHHHHHHhhC
Q 039791          164 TAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDF  243 (552)
Q Consensus       164 ~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~l  243 (552)
                      .+++++|.++ |++.+++.+....+|.+|..   +++.++.|                              +++||.++
T Consensus         6 s~~l~~L~~l-Gv~~~~i~k~p~~~p~lL~~---~~~~~l~~------------------------------~l~fL~~l   51 (270)
T 3m66_A            6 SETLQKLVLL-GVDLSKIEKHPEAANLLLRL---DFEKDIKQ------------------------------MLLFLKDV   51 (270)
T ss_dssp             HHHHHHHHHT-TCCHHHHTTSHHHHHHHHTC---CHHHHTHH------------------------------HHHHHHHH
T ss_pred             hHHHHHHHHc-CCCHHHHhhccchhhhhhcc---ChhhhHHH------------------------------HHHHHHHc
Confidence            4789999999 99999998887778888999   66655555                              45556689


Q ss_pred             CCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHH-hhcCCCHHHH
Q 039791          244 RFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLL-NHLGLSAKEL  322 (552)
Q Consensus       244 G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL-~~lG~s~~~i  322 (552)
                      |+++++|++++.++|.+|.++.++ +.|+++||+++|++.++|++++.++|++|++++++ ++|+++|| .++|++.+++
T Consensus        52 G~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i  129 (270)
T 3m66_A           52 GIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKT  129 (270)
T ss_dssp             TCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHH
T ss_pred             CCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHH
Confidence            999999999999999999999976 99999999999999999999999999999999874 99999999 5799999999


Q ss_pred             HHHHHhCCcccccccccchHHHHHhCCchHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHHHH
Q 039791          323 KSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNK  402 (552)
Q Consensus       323 ~~~l~~~P~iL~~~~lk~~~~~L~~lGv~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k  402 (552)
                      .+++.++|++++.+                                                                  
T Consensus       130 ~~ll~~~P~il~~s------------------------------------------------------------------  143 (270)
T 3m66_A          130 RDLVVRLPRLLTGS------------------------------------------------------------------  143 (270)
T ss_dssp             HHHHHHSGGGGTSC------------------------------------------------------------------
T ss_pred             HHHHHhCCcceeec------------------------------------------------------------------
Confidence            99999999999864                                                                  


Q ss_pred             HHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH-HcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCCCh
Q 039791          403 LTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL-RNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSL  481 (552)
Q Consensus       403 ~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~  481 (552)
                                               .++++++++++. ++||+.++|..|+.++|++|++|.++|++|++||+++||++.
T Consensus       144 -------------------------~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~  198 (270)
T 3m66_A          144 -------------------------LEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPH  198 (270)
T ss_dssp             -------------------------SHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCH
T ss_pred             -------------------------hHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCH
Confidence                                     123456777764 899999999999999999999999999999999999999999


Q ss_pred             HHHhhcCcccccccCCcchhHHHHHHHHHHCCCCCCc---cccccccccchhHHHHHhcccCCCchHhHhh
Q 039791          482 DYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLCTKN---YSIASMVATSEKSFISRIYGIHPAAPKQWLE  549 (552)
Q Consensus       482 ~~l~~~P~~L~ysle~rikpR~~~~~~L~~~G~~~~~---~sl~~il~~sd~~F~~~~~~~~p~~~~~~~~  549 (552)
                      ++|+++|++|+||+| ||+|||+|+++|.++|+.+.+   +++++++++||++|+++|++.++|..+.|.+
T Consensus       199 ~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~~f~k  268 (270)
T 3m66_A          199 HIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFLK  268 (270)
T ss_dssp             HHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHHHHHT
T ss_pred             HHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHHHHHh
Confidence            999999999999999 999999999999999997665   6788899999999999999999999988865

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=4.7e-35  Score=303.65  Aligned_cols=302  Identities=16%  Similarity=0.207  Sum_probs=250.9

Q ss_pred             HHHHhcCCCcccccccCCCcceeeccccchHHHHHHHHhCCCChhhHHHHHhhhccccccChhhHHHHHHHHHhhcCCCh
Q 039791           99 FFFESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSN  178 (552)
Q Consensus        99 ~f~eslGl~~~~~~~~~P~~l~~ls~d~~l~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L~~l~G~s~  178 (552)
                      .||.++|++++.+.+..|. +. +.+.+...+.++||+++|++.++|++++.++|.++.++++.+.++++||+++ |+++
T Consensus        24 ~~L~s~Gl~~~~~~~~~p~-l~-~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~l-G~s~  100 (343)
T 3mva_O           24 KNLLTMGVDIDMARKRQPG-VF-HRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKI-VTSD  100 (343)
T ss_dssp             HHHHHHTCCHHHHHHHCGG-GG-GCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTT-SSCH
T ss_pred             HHHHHcCCCHHHHHHhCch-hh-ccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHc-CCCH
Confidence            6889999999888777776 43 3444577899999999999999999999999999999998999999999999 9999


Q ss_pred             hHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHHhhCC
Q 039791          179 VILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNK  258 (552)
Q Consensus       179 ~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P  258 (552)
                      +++.+++.++|++|..+  ..+.++.                              ++++||+++|++.++|++++.++|
T Consensus       101 ~~i~~il~~~P~iLl~s--~~~~~l~------------------------------p~v~fL~~lGl~~~~i~~ll~~~P  148 (343)
T 3mva_O          101 LEIVNILERSPESFFRS--NNNLNLE------------------------------NNIKFLYSVGLTRKCLCRLLTNAP  148 (343)
T ss_dssp             HHHHHHHHHCSHHHHSC--CCHHHHH------------------------------HHHHHHHHTTCCHHHHHHHHHHCG
T ss_pred             HHHHHHHHHCCHHHhCC--ChHhhHH------------------------------HHHHHHHHhCCCHHHHHHHHHhCC
Confidence            99999999999966552  2222344                              466677799999999999999999


Q ss_pred             cceecCchhhHHHHHHHHHhcCCC------hhHHHHHHhhCCceecccccccHhhHHHHHhh-cCCCHHHHHHHHHhCC-
Q 039791          259 SIFLDYPEEVLVQKVEYFCRFGVG------NEDVGLLLLKSPEILSFDLETQVISVKGLLNH-LGLSAKELKSVSEMYP-  330 (552)
Q Consensus       259 ~lL~~~~~~~l~~~v~fL~~lG~~------~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~~-lG~s~~~i~~~l~~~P-  330 (552)
                      ++++.++++. .+++++|+++|++      .+.|.+++.++|.+++++ +++++++++||++ +|++.+++.+++.+.| 
T Consensus       149 ~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~  226 (343)
T 3mva_O          149 RTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGA  226 (343)
T ss_dssp             GGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTG
T ss_pred             hhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCCh
Confidence            9999998655 9999999987764      778999999999999999 8999999999996 9999999999998865 


Q ss_pred             ccccccc--ccchHH----HHHhCCc-hHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHHHHH
Q 039791          331 YVLGRNK--MANLPY----VIRAVDL-QDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKL  403 (552)
Q Consensus       331 ~iL~~~~--lk~~~~----~L~~lGv-~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~  403 (552)
                      .+++.+.  +++...    ++.++|+ ++++..++.+            +|+++                          
T Consensus       227 ~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~------------~P~il--------------------------  268 (343)
T 3mva_O          227 EILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLS------------YPDVI--------------------------  268 (343)
T ss_dssp             GGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHT------------CGGGG--------------------------
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh------------CCchh--------------------------
Confidence            6777652  333333    3346888 7788888877            77766                          


Q ss_pred             HHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHHHcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCCChHH
Q 039791          404 TFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLLRNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDY  483 (552)
Q Consensus       404 ~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~  483 (552)
                                           ..+.++++++++||.++|++.++|    .++|++|+||.|+|+||++||.+ .|+..+.
T Consensus       269 ---------------------~~s~~~l~~k~~fl~~mg~~~~~i----~~~P~~l~~sleri~~R~~~L~~-~g~~~~~  322 (343)
T 3mva_O          269 ---------------------FLAEKKFNDKIDCLMEENISISQI----IENPRVLDSSISTLKSRIKELVN-AGCNLST  322 (343)
T ss_dssp             ---------------------GSCHHHHHHHHHHHHTTTCCHHHH----HHSGGGGGSCHHHHHHHHHHHHT-TTCCSSS
T ss_pred             ---------------------cccHHHHHHHHHHHHHcCCCHHHH----HhCCHHHhcCHHHHHHHHHHHHH-CCCCCCC
Confidence                                 345678999999999999999875    69999999999999999999987 5986431


Q ss_pred             HhhcCcccccccCCcchhHHH
Q 039791          484 LYAFPTFLCFDLEYRIKPRYK  504 (552)
Q Consensus       484 l~~~P~~L~ysle~rikpR~~  504 (552)
                        .+-.+|+.| |++...||.
T Consensus       323 --~~~~~l~~s-~~~F~~~~~  340 (343)
T 3mva_O          323 --LNITLLSWS-KKRYEAKLK  340 (343)
T ss_dssp             --SCGGGGGSC-HHHHHHHHH
T ss_pred             --CcchhhcCC-HHHHHHHHh
Confidence              122788888 447777765

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=9.7e-35  Score=297.24  Aligned_cols=218  Identities=20%  Similarity=0.331  Sum_probs=196.7

Q ss_pred             hHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHH
Q 039791          232 DICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGL  311 (552)
Q Consensus       232 ~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~f  311 (552)
                      ++..++++|.++|+++++|++++.++|.++.    .++.+++.||.++|++.++|++||.++|.+|+++++ +|+|+++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            3556888999999999999999999999873    678899999999999999999999999999999985 69999999


Q ss_pred             HhhcCCCHHHHHHHHHhCCcccccccccchHHHHHhCCchHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhc
Q 039791          312 LNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLS  391 (552)
Q Consensus       312 L~~lG~s~~~i~~~l~~~P~iL~~~~lk~~~~~L~~lGv~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~  391 (552)
                      |+++|++.++|.+++.++|++|+++                                                       
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s-------------------------------------------------------  144 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMR-------------------------------------------------------  144 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSC-------------------------------------------------------
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccC-------------------------------------------------------
Confidence            9999999999999999999999874                                                       


Q ss_pred             cCCCchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH-HcCCchHHHHHHHhhcCcccccChhhHHHHH
Q 039791          392 SSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL-RNGVAFSKLCMMIRLTPKILNQNPETIEQKL  470 (552)
Q Consensus       392 ~s~~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~  470 (552)
                                                          .+.+++++.+|. ++||+.++|..||.++|+||.+|.+.|++|+
T Consensus       145 ------------------------------------~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~  188 (335)
T 4fp9_B          145 ------------------------------------QQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKF  188 (335)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHH
T ss_pred             ------------------------------------hHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHH
Confidence                                                123455677776 8999999999999999999999999999999


Q ss_pred             HHHHHhhCCChHHHhhcCcccccccCCcchhHHHHHHHHHHCCCC----------CCccccccccccchhHHHHHhcccC
Q 039791          471 DFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWLVENGLC----------TKNYSIASMVATSEKSFISRIYGIH  540 (552)
Q Consensus       471 ~fL~~~mg~~~~~l~~~P~~L~ysle~rikpR~~~~~~L~~~G~~----------~~~~sl~~il~~sd~~F~~~~~~~~  540 (552)
                      +||+++||++.++|++ |+||+||++ ||+|||.+   |+..|..          .++++|.+++.+||++|+.++++.+
T Consensus       189 efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~f---L~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s  263 (335)
T 4fp9_B          189 QYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIY---LERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTS  263 (335)
T ss_dssp             HHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHH---HHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCC
T ss_pred             HHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHH---HHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcC
Confidence            9999999999999997 999999999 99999995   5555553          2367899999999999999999999


Q ss_pred             CCchHhHhhh
Q 039791          541 PAAPKQWLEC  550 (552)
Q Consensus       541 p~~~~~~~~~  550 (552)
                      ++..+.|.+-
T Consensus       264 ~eey~~F~k~  273 (335)
T 4fp9_B          264 VEEFQVFKKL  273 (335)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.97  E-value=5e-30  Score=257.34  Aligned_cols=241  Identities=15%  Similarity=0.191  Sum_probs=204.1

Q ss_pred             HHHHHHHHhCCCChhhHHHHHhhhccccccChh-hHHHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHH
Q 039791          129 LNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQ-DLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLF  207 (552)
Q Consensus       129 ~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~-~l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~  207 (552)
                      .+.+++|.++|++.++|.+...-+|.++.++++ .+++++++|.++ |++++++++++.++|++|..   +++. +.|  
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~l-G~~~~~i~~il~~~P~lL~~---~~e~-l~p--   78 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDV-GIEDNQLGAFLTKNHAIFSE---DLEN-LKT--   78 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHH-TCCGGGHHHHHHHCTTGGGS---CHHH-HHH--
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHc-CCCHHHHHHHHHhCChhhhC---CHHH-HHH--
Confidence            488999999999999998877777888999997 699999999999 99999999999999999999   6654 555  


Q ss_pred             HHHhhhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHH-HhcCCChhHH
Q 039791          208 DDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYF-CRFGVGNEDV  286 (552)
Q Consensus       208 ~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL-~~lG~~~~~i  286 (552)
                                                  +++||+++|+++++|++++.++|++|..+++ ++.++++|| .++|++.+++
T Consensus        79 ----------------------------~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i  129 (270)
T 3m66_A           79 ----------------------------RVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKT  129 (270)
T ss_dssp             ----------------------------HHHHHHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHH
T ss_pred             ----------------------------HHHHHHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHH
Confidence                                        4555668999999999999999999999986 699999999 5899999999


Q ss_pred             HHHHhhCCceecccccccHhhHHHHH-hhcCCCHHHHHHHHHhCCcccccccccchHHHHHhCCchHHHHHHHHcccccc
Q 039791          287 GLLLLKSPEILSFDLETQVISVKGLL-NHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKL  365 (552)
Q Consensus       287 ~~il~~~P~iL~~s~e~~L~~~v~fL-~~lG~s~~~i~~~l~~~P~iL~~~~lk~~~~~L~~lGv~~~l~~iI~~~~~~l  365 (552)
                      .+++.++|.+++++.+ +++++++++ .++|++.++|.+++.++|++|+.+                             
T Consensus       130 ~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s-----------------------------  179 (270)
T 3m66_A          130 RDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-----------------------------  179 (270)
T ss_dssp             HHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-----------------------------
T ss_pred             HHHHHhCCcceeechH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheec-----------------------------
Confidence            9999999999999975 599999975 679999999999999999999864                             


Q ss_pred             cccccccCChhhhhHhhccchhhhhccCCCchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH-HcCCc
Q 039791          366 LGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL-RNGVA  444 (552)
Q Consensus       366 ~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~-~~G~s  444 (552)
                                                                                    .++++++++||. ++|++
T Consensus       180 --------------------------------------------------------------~~~l~~k~~fL~~~mg~~  197 (270)
T 3m66_A          180 --------------------------------------------------------------KMKLTETFDFVHNVMSIP  197 (270)
T ss_dssp             --------------------------------------------------------------HHHHHHHHHHHHTTSCCC
T ss_pred             --------------------------------------------------------------HHHHHHHHHHHHHHhCCC
Confidence                                                                          346788999998 89999


Q ss_pred             hHHHHHHHhhcCcccccChhhHHHHHHHHHHh--hCCChHHHhhcCc---ccccccCCcchhHH
Q 039791          445 FSKLCMMIRLTPKILNQNPETIEQKLDFLCQD--LGSSLDYLYAFPT---FLCFDLEYRIKPRY  503 (552)
Q Consensus       445 ~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~--mg~~~~~l~~~P~---~L~ysle~rikpR~  503 (552)
                      .++    |.++|++|+||.|+|+||+.||..-  .|+...+. .++.   +|..| |++...|+
T Consensus       198 ~~~----i~~~P~~l~~Sleri~pR~~~l~~L~~~g~~~~~~-~~~~L~~~l~~s-d~~F~~~~  255 (270)
T 3m66_A          198 HHI----IVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKP-NYISLDKLVSIP-DEIFCEEI  255 (270)
T ss_dssp             HHH----HHHCGGGGGSCHHHHHHHHHHHHHHTCCCCCTTSS-SCCCHHHHHHSC-HHHHHHHT
T ss_pred             HHH----HHhCchHhhCCHHHHHHHHHHHHHhhccCCCCCCC-CCCCHHHHhcCC-HHHHHHHH
Confidence            977    4699999999999999999999762  24433221 2233   45555 33554443

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.90  E-value=4.2e-23  Score=211.11  Aligned_cols=181  Identities=17%  Similarity=0.269  Sum_probs=161.4

Q ss_pred             hHHHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhHhHHHHHHh
Q 039791          162 DLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFY  241 (552)
Q Consensus       162 ~l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~  241 (552)
                      ++...+..|.++ ||++++|++++..+|.++..   +    +.+                              ++.+|.
T Consensus        45 ~~e~~l~~L~d~-Gfs~~~i~~il~~~P~il~~---~----l~~------------------------------~i~~L~   86 (335)
T 4fp9_B           45 ELERVMSSLLDM-GFSNAHINELLSVRRGASLQ---Q----LLD------------------------------IISEFI   86 (335)
T ss_dssp             HHHHHHHHHHHT-TCCHHHHHHHHHHCSSCCHH---H----HHH------------------------------HHHHHH
T ss_pred             cHHHHHHHHHHC-CCCHHHHHHHHHhCcccchh---H----HHH------------------------------HHHHHH
Confidence            467888899999 99999999999999999766   2    333                              455666


Q ss_pred             hCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHHh-hcCCCHH
Q 039791          242 DFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLN-HLGLSAK  320 (552)
Q Consensus       242 ~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~-~lG~s~~  320 (552)
                      .+|++.++|+++|.++|++|..++ +++.++++||+++|++.++|.+++.++|++++++.+ .+..++.+|. ++|++.+
T Consensus        87 ~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~  164 (335)
T 4fp9_B           87 LLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQ  164 (335)
T ss_dssp             HTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHH
T ss_pred             HcCCCHHHHHHHHHhChhhccCCH-HHHHHHHHHHHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHH
Confidence            899999999999999999999887 689999999999999999999999999999999976 5888888886 5999999


Q ss_pred             HHHHHHHhCCcccccccccchHHHHHhCCchHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHH
Q 039791          321 ELKSVSEMYPYVLGRNKMANLPYVIRAVDLQDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTM  400 (552)
Q Consensus       321 ~i~~~l~~~P~iL~~~~lk~~~~~L~~lGv~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~  400 (552)
                      +|.+++.++|++|+++                                                                
T Consensus       165 ev~~mv~r~P~lL~~S----------------------------------------------------------------  180 (335)
T 4fp9_B          165 QVTKILHSCPSVLRED----------------------------------------------------------------  180 (335)
T ss_dssp             HHHHHHHHCGGGGTSC----------------------------------------------------------------
T ss_pred             HHHHHHHhCChhhhCC----------------------------------------------------------------
Confidence            9999999999999864                                                                


Q ss_pred             HHHHHHHhcCccCCchhHHHHHHHhcChhhHHHHHHHHH-HcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCC
Q 039791          401 NKLTFLHGIGYGENTLTLKVLAKAHGTGSELQERFDCLL-RNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGS  479 (552)
Q Consensus       401 ~k~~fl~~lG~~~~~~~~~al~~l~~~~~~L~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~  479 (552)
                                                 .++|++|++||. +||++.++|.    + |++|+||.++|++|..||.. +|.
T Consensus       181 ---------------------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          181 ---------------------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             ---------------------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred             ---------------------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence                                       346788999999 9999998864    3 99999999999999999987 686

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.03  E-value=2.4e-09  Score=93.49  Aligned_cols=184  Identities=20%  Similarity=0.315  Sum_probs=147.4

Q ss_pred             HHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHHhhcCCCHHHHHHHHHhCCcccccccccchHHHHHhCCc
Q 039791          271 QKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEMYPYVLGRNKMANLPYVIRAVDL  350 (552)
Q Consensus       271 ~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~~lG~s~~~i~~~l~~~P~iL~~~~lk~~~~~L~~lGv  350 (552)
                      ..+.-+.-+|+.++-++-++.+.|+++...+ -.++.+-.||..+|+....+.+++-.+|.++++..             
T Consensus        35 diisefillglnpepvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmrq-------------  100 (239)
T 4fzv_B           35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-------------  100 (239)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-------------
T ss_pred             HHHHHHHhhcCCCCceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-------------
Confidence            3455566689999999999999999999887 45899999999999999999999999999998640             


Q ss_pred             hHHHHHHHHcccccccccccccCChhhhhHhhccchhhhhccCCCchhHHHHHHHHHhcCccCCchhHHHHHHHhcChhh
Q 039791          351 QDWFFNKITNGYYKLLGNYALSNPDEDLDREFGDSLEKLLSSSRTPRHTMNKLTFLHGIGYGENTLTLKVLAKAHGTGSE  430 (552)
Q Consensus       351 ~~~l~~iI~~~~~~l~~~~l~~~P~~l~~~~~g~~v~~~~~~s~~~~~~~~k~~fl~~lG~~~~~~~~~al~~l~~~~~~  430 (552)
                       .                                                                             .
T Consensus       101 -q-----------------------------------------------------------------------------d  102 (239)
T 4fzv_B          101 -Q-----------------------------------------------------------------------------D  102 (239)
T ss_dssp             -H-----------------------------------------------------------------------------H
T ss_pred             -h-----------------------------------------------------------------------------h
Confidence             0                                                                             1


Q ss_pred             HHHHHHHHH-HcCCchHHHHHHHhhcCcccccChhhHHHHHHHHHHhhCCChHHHhhcCcccccccCCcchhHHHHHHHH
Q 039791          431 LQERFDCLL-RNGVAFSKLCMMIRLTPKILNQNPETIEQKLDFLCQDLGSSLDYLYAFPTFLCFDLEYRIKPRYKFHMWL  509 (552)
Q Consensus       431 L~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~l~~~P~~L~ysle~rikpR~~~~~~L  509 (552)
                      +...+..|. +.-|+.++|..++..||.+|.-+...++-|++|-.-.||+..-+|++ ..||.||+. +|+.|+-.++.|
T Consensus       103 indtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerl  180 (239)
T 4fzv_B          103 INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERL  180 (239)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHH
T ss_pred             HhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHh
Confidence            112333444 56788899999999999999999999999999988899999999988 689999999 999999966665


Q ss_pred             HH------CCCC-CCccccccccccchhHHHHHhcccCCCchHhHh
Q 039791          510 VE------NGLC-TKNYSIASMVATSEKSFISRIYGIHPAAPKQWL  548 (552)
Q Consensus       510 ~~------~G~~-~~~~sl~~il~~sd~~F~~~~~~~~p~~~~~~~  548 (552)
                      -.      +|-. .+++-+.+++..|+.+|.++-....-+.-+++.
T Consensus       181 gryqtpdkkgqtqipnpllkdilrvseaeflartactsveefqvfk  226 (239)
T 4fzv_B          181 GRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFK  226 (239)
T ss_dssp             TCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHHHHHHH
T ss_pred             cccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHHHHHHHH
Confidence            32      2211 124557789999999999998877666555543

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.13  E-value=2.3e-05  Score=68.44  Aligned_cols=151  Identities=17%  Similarity=0.237  Sum_probs=121.1

Q ss_pred             cchHHHHHHHHhCCCChhhHHHHHhhhccccccChhhHHHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHH
Q 039791          126 SCLLNAACALSSFGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIAT  205 (552)
Q Consensus       126 ~~l~~~~~~L~~~G~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~  205 (552)
                      ..+.+.+.-+--+|+.++-+.-++++.|.++..+.-.++.+-.||.++ |+....+.+++-+||.++....+|++    .
T Consensus        31 qqlldiisefillglnpepvcvvlkkspqllklpimqmrkrssylqkl-glgegklkrvlyccpeiftmrqqdin----d  105 (239)
T 4fzv_B           31 QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKL-GLGEGKLKRVLYCCPEIFTMRQQDIN----D  105 (239)
T ss_dssp             CTTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHH-TTCSSCCHHHHHHCGGGGTSCHHHHH----H
T ss_pred             HHHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHHHh-CCCccchhhheecCcHHHHHHHhhHh----H
Confidence            455666766777899999999999999999999998899999999999 99999999999999999998543333    2


Q ss_pred             HHHHHhhhhhcccccccccCCccchhhHhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHH-hcCCChh
Q 039791          206 LFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFC-RFGVGNE  284 (552)
Q Consensus       206 ~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~-~lG~~~~  284 (552)
                      ++.-|+                             .++=++..++.+++..+|.++..+. ..+.-++.|-- .+|+...
T Consensus       106 tvrllk-----------------------------ekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhp  155 (239)
T 4fzv_B          106 TVRLLK-----------------------------EKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHP  155 (239)
T ss_dssp             HHHHHH-----------------------------HHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHH-----------------------------HhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCc
Confidence            333333                             2477889999999999999999887 67888888766 7999888


Q ss_pred             HHHHHHhhCCceecccccccHhhHHHHHhhcCC
Q 039791          285 DVGLLLLKSPEILSFDLETQVISVKGLLNHLGL  317 (552)
Q Consensus       285 ~i~~il~~~P~iL~~s~e~~L~~~v~fL~~lG~  317 (552)
                      ||.+     ..-+.+|+ ..++.+.-||..+|-
T Consensus       156 divk-----seylqysl-tkikqrhiylerlgr  182 (239)
T 4fzv_B          156 DIVK-----SEYLQYSL-TKIKQRHIYLERLGR  182 (239)
T ss_dssp             HHHH-----TTGGGSCH-HHHHHHHHHHHHHTC
T ss_pred             chhH-----HHHHHHHH-HHHHHHHhHHHHhcc
Confidence            7644     34577887 448999999988874

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=88.70  E-value=2  Score=46.78  Aligned_cols=143  Identities=14%  Similarity=0.115  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHhhc-----ChHHHHHHHHh--cCCCCChhhHHH---------HHHHHHhhcCcc
Q 039791           32 IKEAQQAVTEYLHYTKSIPFTYAEHISKH-----SLNTLSKLIAD--LGVSYSAPSFSS---------TFQRFLRYHPIN   95 (552)
Q Consensus        32 ~~~a~~~~~~yL~~~~gl~~~~A~~is~~-----sp~~~~~ll~~--~~~~~~~~~~~~---------~~~r~l~~~pi~   95 (552)
                      .-||-.++..-|-..+||+.++-..|+.|     +-+.+..|+-.  ...+|+..+|-.         .+....+.    
T Consensus       272 ALeaV~~llp~L~~~~gls~~qvvaIAsn~GGkQALetV~~llp~L~~~~gltp~qvVaIAsn~GGkQALe~V~~l----  347 (1047)
T 3ugm_A          272 ALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRL----  347 (1047)
T ss_dssp             HHHHHHHHSHHHHHHHCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHSSSSCHHHHHHHHHH----
T ss_pred             HHHHHHHHhhhhhccccCCHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCCHHHheeecccCccHHHHHHHHHH----
Confidence            34455556677776699999999999987     34444443332  125777766643         33333332    


Q ss_pred             hhHHHH-HhcCCCcccccccCCCcceeeccccchHHHHHHHHh-CCCChhhHHHHHhhhccccccChhhHHHHHHHH---
Q 039791           96 EFEFFF-ESIGIDHAEVSCFLPANKFFLSEDSCLLNAACALSS-FGFPWDKLGKLYKEEVSIFSQSSQDLTAKLSRL---  170 (552)
Q Consensus        96 ~~e~f~-eslGl~~~~~~~~~P~~l~~ls~d~~l~~~~~~L~~-~G~~~~~i~~~~~~~P~ll~~~~~~l~~~l~~L---  170 (552)
                        ++.+ ..-|++|..+-.+-..+= .-..-+.+....-.||. +|++.++|.+|-..      -.-..+..+.+.+   
T Consensus       348 --lpvL~~~~gls~~qvVaIAsn~G-GkQALe~V~~llp~L~~~~gls~~~vvaiA~~------GG~qALe~V~~L~p~l  418 (1047)
T 3ugm_A          348 --LPVLCQAHGLTPDQVVAIASNGG-GKQALETVQRLLPVLCQAHGLTPDQVVAIASN------GGKQALETVQRLLPVL  418 (1047)
T ss_dssp             --HHHHHTTSCCCHHHHHHHHSSTT-HHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH------THHHHHHHHHHHHHHH
T ss_pred             --hhhhhhhccCCHHHhhhhhhcCc-hHHHHHHHHHhhhhhhhhcCCCHHHHHHHhcc------cchhHHHHHhhccchh
Confidence              2233 257888877766511100 00001234445556776 89999988876520      0011244444432   


Q ss_pred             -HhhcCCChhHHhhHhhcC
Q 039791          171 -KNYYGFSNVILVGICLGF  188 (552)
Q Consensus       171 -~~l~G~s~~~i~~lv~~~  188 (552)
                       ++. ||++++|.+|-...
T Consensus       419 ~~~~-glt~~qvv~IAsn~  436 (1047)
T 3ugm_A          419 CQAH-GLTPDQVVAIASHD  436 (1047)
T ss_dssp             HTTS-SCCHHHHHHHHSST
T ss_pred             hhhc-CCCHHHhhhhhccC
Confidence             356 99999888887643

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=83.42  E-value=2.3  Score=43.43  Aligned_cols=41  Identities=12%  Similarity=0.213  Sum_probs=25.6

Q ss_pred             HhHHHHHHhhCCCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCC
Q 039791          233 ICRKIRVFYDFRFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVG  282 (552)
Q Consensus       233 ~~~~l~fl~~lG~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~  282 (552)
                      ....+..|.++||+++++.+.+...        .++....++||.+ |++
T Consensus       168 ~~~~i~~l~~MGf~~~~~~~AL~a~--------~nn~~~A~e~L~~-gip  208 (368)
T 1oqy_A          168 YETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT-GIP  208 (368)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHS--------CSSTTHHHHTTTT-SST
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh-CCC
Confidence            4456777777777777777776654        1355666777753 444

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=81.44  E-value=22  Score=29.85  Aligned_cols=105  Identities=14%  Similarity=0.107  Sum_probs=60.5

Q ss_pred             HHHHHHHHhhcCCChhHHhhHhhcCccccccccccccccHHHHHHHHhhhhhcccccccccCCccchhhHhHHHHHHhhC
Q 039791          164 TAKLSRLKNYYGFSNVILVGICLGFPHVLAGNGDEWGTEIATLFDDLKTVFVDFGLMSSVEGNVEVWYDICRKIRVFYDF  243 (552)
Q Consensus       164 ~~~l~~L~~l~G~s~~~i~~lv~~~P~lL~~s~~~~~~~l~~~~~~L~~l~~~~~~~~l~~~~~~s~~~~~~~l~fl~~l  243 (552)
                      +..+.-|.+. ||+...+.+.+..+-          + +....++||-..                        .-|.+.
T Consensus         9 ~~~v~~l~~M-GFp~~~~~kAl~~~g----------~-~~e~amewL~~h------------------------~~L~d~   52 (118)
T 4ae4_A            9 RQCVETVVNM-GYSYECVLRAMKAAG----------A-NIEQILDYLFAH------------------------GQLCEK   52 (118)
T ss_dssp             HHHHHHHHHT-TCCHHHHHHHHHHHC----------S-CHHHHHHHHHHH------------------------HHHHHT
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHHC----------c-CHHHHHHHHHHh------------------------chhccc
Confidence            3566777788 888888877766431          1 466777777531                        113456


Q ss_pred             CCChhHHHHHHhhCCcceecCchhhHHHHHHHHHhcCCChhHHHHHHhhCCceecccccccHhhHHHHHhh
Q 039791          244 RFEKGKLGELMGRNKSIFLDYPEEVLVQKVEYFCRFGVGNEDVGLLLLKSPEILSFDLETQVISVKGLLNH  314 (552)
Q Consensus       244 G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~L~~~v~fL~~  314 (552)
                      |+++.++...+..+..-  ......-...+.-|.++|++.+.+.+.+..+-        +++..-++||-.
T Consensus        53 ~~d~~~~e~~l~~~~~~--~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~  113 (118)
T 4ae4_A           53 GFDPLLVEEALEMHQCS--EEKMMEFLQLMSKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMA  113 (118)
T ss_dssp             TCCHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred             CCChhhhHHHHHhccCC--ccccccCHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence            77776666666543210  00001123456666777777777777766532        445556666643

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=81.13  E-value=2.9  Score=30.15  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=21.7

Q ss_pred             HhhCCceecccccccHhhHHHHHhhcCCCHHHHHHHHHh
Q 039791          290 LLKSPEILSFDLETQVISVKGLLNHLGLSAKELKSVSEM  328 (552)
Q Consensus       290 l~~~P~iL~~s~e~~L~~~v~fL~~lG~s~~~i~~~l~~  328 (552)
                      +.++|.+-..+    +..+++||++-|++.+||..++.+
T Consensus        19 FL~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           19 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HhCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            44556665543    455777777777777777666654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00